Query 005977
Match_columns 666
No_of_seqs 466 out of 3315
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13796 GTPase YqeH; Provisio 100.0 7.7E-69 1.7E-73 581.1 34.4 332 245-616 34-365 (365)
2 TIGR03597 GTPase_YqeH ribosome 100.0 3.3E-65 7.1E-70 552.0 35.1 333 245-616 28-360 (360)
3 KOG1249 Predicted GTPases [Gen 100.0 2.5E-62 5.4E-67 530.7 10.2 403 244-654 155-569 (572)
4 COG1160 Predicted GTPases [Gen 100.0 3.7E-32 8.1E-37 294.2 16.4 218 203-467 4-243 (444)
5 COG1161 Predicted GTPases [Gen 100.0 1.4E-32 2.9E-37 293.6 7.4 306 247-615 1-321 (322)
6 cd01855 YqeH YqeH. YqeH is an 100.0 5.7E-30 1.2E-34 252.6 18.6 186 248-460 1-190 (190)
7 cd01858 NGP_1 NGP-1. Autoanti 99.9 4.1E-25 8.8E-30 211.8 14.9 148 287-460 5-157 (157)
8 PRK12289 GTPase RsgA; Reviewed 99.9 1.1E-23 2.5E-28 227.1 15.5 224 244-500 35-271 (352)
9 PRK03003 GTP-binding protein D 99.9 5.7E-23 1.2E-27 230.3 18.7 214 203-463 39-272 (472)
10 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-22 2.9E-27 223.9 17.8 215 205-466 2-236 (429)
11 cd01849 YlqF_related_GTPase Yl 99.9 2.8E-22 6.2E-27 191.9 15.5 142 292-460 1-155 (155)
12 PRK00093 GTP-binding protein D 99.9 4.9E-22 1.1E-26 220.0 18.7 217 204-467 3-238 (435)
13 TIGR03596 GTPase_YlqF ribosome 99.9 4.8E-22 1E-26 208.3 16.3 154 280-466 13-179 (276)
14 PRK09518 bifunctional cytidyla 99.9 6.8E-22 1.5E-26 231.7 17.6 215 203-464 276-512 (712)
15 TIGR00157 ribosome small subun 99.9 1.7E-21 3.8E-26 200.8 17.2 192 287-509 33-228 (245)
16 PRK09563 rbgA GTPase YlqF; Rev 99.9 3.4E-21 7.3E-26 203.0 17.6 153 280-465 16-181 (287)
17 cd04178 Nucleostemin_like Nucl 99.9 8.9E-22 1.9E-26 192.7 11.9 147 292-460 1-172 (172)
18 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 4E-21 8.6E-26 181.3 14.4 134 287-463 8-141 (141)
19 PRK12288 GTPase RsgA; Reviewed 99.9 6.3E-21 1.4E-25 205.7 17.2 195 287-510 117-315 (347)
20 COG1159 Era GTPase [General fu 99.9 2.1E-21 4.6E-26 201.2 12.1 161 202-400 7-176 (298)
21 KOG2484 GTPase [General functi 99.9 4E-21 8.6E-26 204.3 13.3 158 280-466 138-313 (435)
22 cd01856 YlqF YlqF. Proteins o 99.8 2.4E-20 5.2E-25 181.5 16.4 144 287-461 16-171 (171)
23 COG1162 Predicted GTPases [Gen 99.8 2.7E-20 5.9E-25 194.5 16.5 190 281-500 71-262 (301)
24 cd01859 MJ1464 MJ1464. This f 99.8 3.6E-20 7.7E-25 176.9 15.3 145 287-460 9-156 (156)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.8 1.3E-19 2.8E-24 191.0 16.3 193 287-510 75-271 (287)
26 PRK00098 GTPase RsgA; Reviewed 99.8 2.2E-19 4.8E-24 190.2 16.6 193 287-509 77-273 (298)
27 KOG1424 Predicted GTP-binding 99.8 1.2E-19 2.6E-24 197.9 12.0 169 270-467 156-376 (562)
28 KOG2423 Nucleolar GTPase [Gene 99.8 4.9E-19 1.1E-23 187.3 9.8 162 276-465 201-367 (572)
29 PRK01889 GTPase RsgA; Reviewed 99.7 3.7E-16 8.1E-21 169.5 16.0 181 288-500 110-292 (356)
30 KOG2485 Conserved ATP/GTP bind 99.7 3.3E-16 7.3E-21 162.9 12.4 158 287-467 43-213 (335)
31 TIGR00436 era GTP-binding prot 99.6 2E-15 4.4E-20 157.6 10.8 157 202-398 1-166 (270)
32 PF03193 DUF258: Protein of un 99.6 5.7E-16 1.2E-20 149.8 5.6 124 362-500 8-133 (161)
33 KOG1423 Ras-like GTPase ERA [C 99.5 4.4E-14 9.6E-19 146.5 9.2 166 202-398 73-273 (379)
34 PRK00089 era GTPase Era; Revie 99.5 8E-14 1.7E-18 146.7 10.3 159 202-398 6-173 (292)
35 PRK15494 era GTPase Era; Provi 99.5 2.7E-13 5.8E-18 146.4 11.5 157 204-399 54-219 (339)
36 PRK12298 obgE GTPase CgtA; Rev 99.4 2.5E-13 5.3E-18 149.2 10.4 164 205-397 162-334 (390)
37 KOG1249 Predicted GTPases [Gen 99.4 5.7E-13 1.2E-17 146.7 8.8 180 245-449 75-270 (572)
38 COG1160 Predicted GTPases [Gen 99.4 1.4E-12 3E-17 142.6 10.3 178 201-421 177-368 (444)
39 KOG1144 Translation initiation 99.3 6.5E-12 1.4E-16 141.7 11.5 251 198-491 471-764 (1064)
40 PF02421 FeoB_N: Ferrous iron 99.3 3E-12 6.6E-17 123.6 7.4 144 205-391 3-156 (156)
41 PRK12296 obgE GTPase CgtA; Rev 99.3 1.1E-11 2.3E-16 139.3 11.8 164 205-395 162-339 (500)
42 COG0218 Predicted GTPase [Gene 99.3 1.7E-11 3.7E-16 121.7 11.6 159 201-395 23-196 (200)
43 TIGR02729 Obg_CgtA Obg family 99.3 2.1E-11 4.6E-16 131.2 10.7 160 205-395 160-328 (329)
44 PRK12299 obgE GTPase CgtA; Rev 99.2 3.9E-11 8.5E-16 129.4 11.3 159 205-396 161-328 (335)
45 cd01898 Obg Obg subfamily. Th 99.2 4.8E-11 1E-15 113.9 10.2 95 287-394 75-169 (170)
46 COG0486 ThdF Predicted GTPase 99.2 2.8E-11 6E-16 132.8 8.5 152 201-396 216-376 (454)
47 PRK12297 obgE GTPase CgtA; Rev 99.2 1.2E-10 2.7E-15 129.0 12.4 158 205-396 161-327 (424)
48 cd01894 EngA1 EngA1 subfamily. 99.2 8.8E-11 1.9E-15 109.9 8.9 84 287-394 73-156 (157)
49 cd04171 SelB SelB subfamily. 99.1 4.7E-10 1E-14 105.9 13.0 93 287-393 71-163 (164)
50 PF10662 PduV-EutP: Ethanolami 99.1 1.8E-10 4E-15 109.5 9.9 137 206-393 5-143 (143)
51 TIGR03156 GTP_HflX GTP-binding 99.1 1.4E-10 3.1E-15 125.9 10.2 153 201-394 188-350 (351)
52 COG1159 Era GTPase [General fu 99.1 6.5E-11 1.4E-15 123.6 6.1 105 399-510 7-112 (298)
53 COG2262 HflX GTPases [General 99.1 2.6E-10 5.7E-15 123.3 9.4 175 203-410 193-372 (411)
54 TIGR02528 EutP ethanolamine ut 99.1 1.7E-09 3.8E-14 100.7 13.2 83 287-392 59-141 (142)
55 cd01879 FeoB Ferrous iron tran 99.1 1.9E-09 4E-14 101.3 13.3 83 289-394 73-155 (158)
56 COG0486 ThdF Predicted GTPase 99.1 3.1E-10 6.7E-15 124.7 8.7 64 396-464 215-279 (454)
57 KOG1489 Predicted GTP-binding 99.1 4.8E-10 1E-14 117.5 9.4 156 207-394 201-365 (366)
58 cd01881 Obg_like The Obg-like 99.0 5.7E-10 1.2E-14 106.7 8.8 100 287-393 71-174 (176)
59 cd01897 NOG NOG1 is a nucleola 99.0 1.1E-09 2.4E-14 104.4 10.5 87 291-394 80-166 (168)
60 PRK00093 GTP-binding protein D 99.0 1.1E-09 2.5E-14 121.6 12.0 162 200-394 171-342 (435)
61 PRK15467 ethanolamine utilizat 99.0 2.5E-09 5.5E-14 103.0 12.5 86 287-395 61-146 (158)
62 PF00009 GTP_EFTU: Elongation 99.0 2.5E-09 5.4E-14 105.5 12.3 107 270-396 78-187 (188)
63 PF02421 FeoB_N: Ferrous iron 99.0 4.9E-10 1.1E-14 108.4 7.1 59 400-464 2-61 (156)
64 cd04160 Arfrp1 Arfrp1 subfamil 99.0 1.5E-09 3.2E-14 103.5 10.2 97 287-393 70-166 (167)
65 TIGR03594 GTPase_EngA ribosome 99.0 1.2E-09 2.7E-14 120.9 10.7 93 287-395 251-343 (429)
66 PRK03003 GTP-binding protein D 99.0 1.5E-09 3.2E-14 122.4 11.3 111 287-422 290-400 (472)
67 PRK04213 GTP-binding protein; 99.0 7.6E-09 1.6E-13 102.4 15.1 94 288-397 88-193 (201)
68 cd00881 GTP_translation_factor 99.0 7.4E-09 1.6E-13 100.0 14.6 97 287-397 82-188 (189)
69 cd04163 Era Era subfamily. Er 99.0 2E-09 4.4E-14 100.6 10.3 89 287-394 79-167 (168)
70 cd01895 EngA2 EngA2 subfamily. 99.0 3.1E-09 6.6E-14 100.6 10.9 93 287-394 81-173 (174)
71 cd01889 SelB_euk SelB subfamil 99.0 6.5E-09 1.4E-13 102.6 13.3 97 287-397 88-187 (192)
72 cd01890 LepA LepA subfamily. 99.0 9.9E-09 2.2E-13 99.0 14.3 91 287-396 87-177 (179)
73 PRK11058 GTPase HflX; Provisio 99.0 2.2E-09 4.8E-14 119.4 10.9 90 287-396 273-362 (426)
74 PRK09518 bifunctional cytidyla 98.9 3.5E-09 7.5E-14 125.0 10.3 93 287-396 529-621 (712)
75 cd01866 Rab2 Rab2 subfamily. 98.9 2.3E-08 5E-13 96.2 14.1 91 287-394 73-164 (168)
76 cd04166 CysN_ATPS CysN_ATPS su 98.9 2.2E-08 4.8E-13 100.7 14.3 89 287-388 97-186 (208)
77 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 4.1E-08 8.9E-13 93.3 15.2 92 288-394 71-164 (168)
78 cd01884 EF_Tu EF-Tu subfamily. 98.9 2.1E-08 4.5E-13 100.3 13.6 87 287-385 85-172 (195)
79 cd04138 H_N_K_Ras_like H-Ras/N 98.9 2.5E-08 5.5E-13 93.7 13.5 91 288-394 70-160 (162)
80 COG0218 Predicted GTPase [Gene 98.9 1.6E-09 3.4E-14 107.8 5.3 61 399-465 25-85 (200)
81 PF01926 MMR_HSR1: 50S ribosom 98.9 4E-09 8.7E-14 95.6 7.2 61 400-465 1-62 (116)
82 cd01861 Rab6 Rab6 subfamily. 98.9 1.8E-08 3.9E-13 95.2 12.0 91 288-394 70-160 (161)
83 PRK05291 trmE tRNA modificatio 98.9 4.4E-09 9.5E-14 117.9 8.8 148 201-396 214-370 (449)
84 cd01865 Rab3 Rab3 subfamily. 98.9 3.9E-08 8.5E-13 94.2 14.1 92 287-395 70-162 (165)
85 cd04151 Arl1 Arl1 subfamily. 98.9 1.5E-08 3.2E-13 96.2 11.2 95 287-393 63-157 (158)
86 COG0536 Obg Predicted GTPase [ 98.9 4.9E-09 1.1E-13 111.2 8.1 99 287-395 234-332 (369)
87 cd01868 Rab11_like Rab11-like. 98.9 4.2E-08 9.1E-13 93.4 13.9 90 288-394 73-163 (165)
88 cd00154 Rab Rab family. Rab G 98.9 2E-08 4.4E-13 93.1 11.4 153 206-392 4-158 (159)
89 KOG1191 Mitochondrial GTPase [ 98.9 3.4E-09 7.3E-14 116.6 6.9 63 395-462 265-328 (531)
90 smart00178 SAR Sar1p-like memb 98.8 3E-08 6.5E-13 97.5 12.9 159 203-393 18-182 (184)
91 cd04145 M_R_Ras_like M-Ras/R-R 98.8 2.4E-08 5.3E-13 94.5 11.9 157 203-394 3-162 (164)
92 cd04164 trmE TrmE (MnmE, ThdF, 98.8 1.1E-08 2.3E-13 95.6 9.2 79 287-394 77-155 (157)
93 cd01864 Rab19 Rab19 subfamily. 98.8 3.3E-08 7.1E-13 94.4 12.7 91 288-394 73-164 (165)
94 cd04123 Rab21 Rab21 subfamily. 98.8 6.3E-08 1.4E-12 91.0 14.3 156 205-394 3-160 (162)
95 smart00175 RAB Rab subfamily o 98.8 2.3E-08 5E-13 94.5 11.2 155 206-395 4-161 (164)
96 PRK09554 feoB ferrous iron tra 98.8 2.6E-08 5.6E-13 118.2 13.9 84 289-395 84-167 (772)
97 cd04119 RJL RJL (RabJ-Like) su 98.8 6.9E-08 1.5E-12 91.3 14.2 95 288-394 70-165 (168)
98 cd01862 Rab7 Rab7 subfamily. 98.8 7.6E-08 1.6E-12 91.8 14.5 96 287-394 69-165 (172)
99 cd04159 Arl10_like Arl10-like 98.8 4.9E-08 1.1E-12 90.7 12.2 95 287-393 64-158 (159)
100 cd01878 HflX HflX subfamily. 98.8 2.9E-08 6.2E-13 98.6 11.3 86 288-394 118-203 (204)
101 smart00173 RAS Ras subfamily o 98.8 3.1E-08 6.7E-13 94.1 10.8 91 288-394 69-160 (164)
102 cd04112 Rab26 Rab26 subfamily. 98.8 7.4E-08 1.6E-12 95.0 13.8 91 288-395 71-162 (191)
103 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 2.9E-08 6.2E-13 96.4 10.7 94 287-393 79-173 (174)
104 COG0370 FeoB Fe2+ transport sy 98.8 2.3E-08 5E-13 114.3 11.2 151 204-397 5-165 (653)
105 cd01860 Rab5_related Rab5-rela 98.8 1.3E-07 2.8E-12 89.6 14.6 92 287-395 70-162 (163)
106 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.8 1E-07 2.2E-12 91.0 13.9 90 288-394 72-162 (166)
107 TIGR03598 GTPase_YsxC ribosome 98.8 2.6E-08 5.6E-13 97.3 9.9 81 289-385 99-179 (179)
108 cd04157 Arl6 Arl6 subfamily. 98.8 5.5E-08 1.2E-12 91.8 11.7 97 287-393 65-161 (162)
109 cd04109 Rab28 Rab28 subfamily. 98.8 1.6E-07 3.5E-12 94.6 15.7 93 288-394 71-164 (215)
110 cd04136 Rap_like Rap-like subf 98.8 9E-08 2E-12 90.5 12.8 91 288-394 70-161 (163)
111 cd01863 Rab18 Rab18 subfamily. 98.8 5.5E-08 1.2E-12 92.1 11.3 91 287-393 69-159 (161)
112 cd04156 ARLTS1 ARLTS1 subfamil 98.8 8.3E-08 1.8E-12 90.7 12.1 95 288-393 65-159 (160)
113 cd04140 ARHI_like ARHI subfami 98.7 1.7E-07 3.7E-12 89.7 14.0 93 288-394 70-163 (165)
114 cd04101 RabL4 RabL4 (Rab-like4 98.7 1.7E-07 3.6E-12 89.0 13.9 102 270-394 60-162 (164)
115 cd04150 Arf1_5_like Arf1-Arf5- 98.7 5.6E-08 1.2E-12 93.1 10.6 95 287-393 64-158 (159)
116 KOG1191 Mitochondrial GTPase [ 98.7 6.5E-09 1.4E-13 114.4 4.2 170 200-394 266-448 (531)
117 PRK00454 engB GTP-binding prot 98.7 1E-07 2.2E-12 93.4 12.2 91 289-397 105-195 (196)
118 PRK12317 elongation factor 1-a 98.7 6.9E-08 1.5E-12 107.4 12.2 169 204-388 8-197 (425)
119 cd01893 Miro1 Miro1 subfamily. 98.7 2.1E-07 4.7E-12 89.3 13.7 95 288-394 68-162 (166)
120 cd04149 Arf6 Arf6 subfamily. 98.7 1.3E-07 2.8E-12 91.6 12.2 95 287-393 73-167 (168)
121 cd04139 RalA_RalB RalA/RalB su 98.7 2.1E-07 4.5E-12 87.8 13.4 92 287-394 68-160 (164)
122 cd00879 Sar1 Sar1 subfamily. 98.7 9.7E-08 2.1E-12 93.4 11.2 98 288-394 84-189 (190)
123 cd04118 Rab24 Rab24 subfamily. 98.7 9.9E-08 2.1E-12 93.7 11.2 93 288-394 71-164 (193)
124 cd04124 RabL2 RabL2 subfamily. 98.7 2.6E-07 5.7E-12 88.3 13.9 88 287-394 69-156 (161)
125 cd04154 Arl2 Arl2 subfamily. 98.7 1.5E-07 3.2E-12 91.0 12.2 93 288-392 79-171 (173)
126 cd01867 Rab8_Rab10_Rab13_like 98.7 3E-07 6.5E-12 88.2 14.2 91 287-394 72-163 (167)
127 cd04144 Ras2 Ras2 subfamily. 98.7 1.1E-07 2.4E-12 93.7 11.5 94 287-394 67-161 (190)
128 cd04147 Ras_dva Ras-dva subfam 98.7 2E-07 4.3E-12 92.6 13.4 96 287-395 67-162 (198)
129 cd04175 Rap1 Rap1 subgroup. T 98.7 1.8E-07 3.9E-12 89.1 12.5 91 288-394 70-161 (164)
130 cd01891 TypA_BipA TypA (tyrosi 98.7 1.9E-07 4E-12 92.4 12.9 87 287-388 85-174 (194)
131 smart00174 RHO Rho (Ras homolo 98.7 1.6E-07 3.4E-12 90.3 12.0 96 287-394 66-170 (174)
132 TIGR00436 era GTP-binding prot 98.7 2.2E-08 4.8E-13 104.7 6.6 60 399-463 1-61 (270)
133 TIGR00437 feoB ferrous iron tr 98.7 9.4E-08 2E-12 110.6 12.0 83 289-394 71-153 (591)
134 cd01853 Toc34_like Toc34-like 98.7 5.7E-08 1.2E-12 100.9 9.0 75 385-464 18-93 (249)
135 cd04142 RRP22 RRP22 subfamily. 98.7 1.6E-07 3.4E-12 94.0 11.9 95 287-394 77-172 (198)
136 cd04114 Rab30 Rab30 subfamily. 98.7 4.6E-07 9.9E-12 86.5 14.4 92 287-394 76-167 (169)
137 cd04158 ARD1 ARD1 subfamily. 98.7 9.5E-08 2.1E-12 92.2 9.6 98 288-396 64-161 (169)
138 PRK05506 bifunctional sulfate 98.7 3.2E-07 7E-12 107.2 15.5 171 205-394 27-231 (632)
139 cd04106 Rab23_lke Rab23-like s 98.7 1.8E-07 4E-12 88.4 11.2 88 288-393 72-160 (162)
140 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 3.3E-08 7.1E-13 98.2 6.3 62 400-465 2-64 (196)
141 cd04113 Rab4 Rab4 subfamily. 98.7 4.9E-07 1.1E-11 85.7 14.0 89 288-393 70-159 (161)
142 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 5.7E-07 1.2E-11 89.4 15.1 96 287-394 70-166 (201)
143 cd04137 RheB Rheb (Ras Homolog 98.7 3.2E-07 6.9E-12 88.9 12.9 92 288-394 70-161 (180)
144 cd00880 Era_like Era (E. coli 98.6 9.4E-08 2E-12 87.8 8.7 91 287-394 72-162 (163)
145 cd04122 Rab14 Rab14 subfamily. 98.6 5.1E-07 1.1E-11 86.4 14.0 90 287-393 71-161 (166)
146 cd04176 Rap2 Rap2 subgroup. T 98.6 1.2E-07 2.6E-12 90.1 9.6 91 288-394 70-161 (163)
147 TIGR00475 selB selenocysteine- 98.6 2.4E-07 5.2E-12 107.1 13.9 161 205-395 3-165 (581)
148 cd01892 Miro2 Miro2 subfamily. 98.6 1.3E-07 2.7E-12 91.7 9.7 89 288-394 75-164 (169)
149 cd00878 Arf_Arl Arf (ADP-ribos 98.6 3.8E-07 8.3E-12 86.2 12.7 154 206-393 3-157 (158)
150 TIGR00450 mnmE_trmE_thdF tRNA 98.6 1.2E-07 2.7E-12 106.1 10.6 148 201-394 202-358 (442)
151 cd00876 Ras Ras family. The R 98.6 1.9E-07 4.1E-12 87.6 10.3 92 287-394 67-159 (160)
152 cd04125 RabA_like RabA-like su 98.6 7.4E-07 1.6E-11 87.4 14.6 91 287-394 69-160 (188)
153 COG1084 Predicted GTPase [Gene 98.6 1.4E-07 3.1E-12 99.9 9.9 79 398-484 168-247 (346)
154 cd04110 Rab35 Rab35 subfamily. 98.6 4.1E-07 8.9E-12 90.5 12.7 89 288-394 76-165 (199)
155 smart00177 ARF ARF-like small 98.6 5.4E-07 1.2E-11 87.8 13.1 95 288-394 78-172 (175)
156 PTZ00133 ADP-ribosylation fact 98.6 1.6E-07 3.5E-12 92.3 9.2 92 288-395 82-177 (182)
157 PTZ00369 Ras-like protein; Pro 98.6 2.7E-07 6E-12 90.8 10.5 91 288-394 74-165 (189)
158 PRK12298 obgE GTPase CgtA; Rev 98.6 1.1E-07 2.4E-12 104.8 8.3 60 400-465 161-222 (390)
159 cd04116 Rab9 Rab9 subfamily. 98.6 1.3E-06 2.8E-11 83.7 14.6 95 287-393 74-168 (170)
160 cd00157 Rho Rho (Ras homology) 98.6 1.6E-07 3.4E-12 89.5 8.2 94 288-393 69-170 (171)
161 PLN03118 Rab family protein; P 98.6 4.1E-07 8.9E-12 91.2 11.3 161 202-395 14-176 (211)
162 cd01888 eIF2_gamma eIF2-gamma 98.6 4E-07 8.6E-12 91.2 10.9 99 287-398 103-201 (203)
163 cd04128 Spg1 Spg1p. Spg1p (se 98.5 1.1E-06 2.3E-11 86.7 13.5 94 287-394 69-164 (182)
164 cd04155 Arl3 Arl3 subfamily. 98.5 9.2E-07 2E-11 84.8 12.8 90 288-393 79-172 (173)
165 cd04111 Rab39 Rab39 subfamily. 98.5 5.3E-07 1.2E-11 90.9 11.4 92 287-394 72-164 (211)
166 CHL00071 tufA elongation facto 98.5 4.4E-07 9.6E-12 100.7 11.7 153 203-383 13-180 (409)
167 cd04135 Tc10 TC10 subfamily. 98.5 8.7E-07 1.9E-11 85.1 12.3 95 287-393 68-171 (174)
168 cd04127 Rab27A Rab27a subfamil 98.5 1.1E-06 2.3E-11 85.1 12.9 92 287-394 83-175 (180)
169 PRK09866 hypothetical protein; 98.5 5E-07 1.1E-11 103.4 12.1 96 287-394 255-351 (741)
170 cd00877 Ran Ran (Ras-related n 98.5 1E-06 2.2E-11 85.0 12.6 88 288-394 70-157 (166)
171 cd04132 Rho4_like Rho4-like su 98.5 1.5E-06 3.3E-11 84.7 14.1 92 287-394 69-165 (187)
172 PRK10512 selenocysteinyl-tRNA- 98.5 7.6E-07 1.6E-11 103.5 13.8 108 269-396 58-166 (614)
173 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 1.1E-06 2.4E-11 85.2 12.9 96 287-395 69-164 (170)
174 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.5 5.4E-07 1.2E-11 88.4 10.7 96 288-394 73-168 (183)
175 PTZ00258 GTP-binding protein; 98.5 2.4E-07 5.2E-12 101.8 8.9 88 396-492 19-124 (390)
176 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 1.8E-06 3.8E-11 84.0 14.1 91 288-394 71-162 (172)
177 cd01876 YihA_EngB The YihA (En 98.5 1.6E-06 3.4E-11 81.3 13.0 90 289-394 80-169 (170)
178 cd01870 RhoA_like RhoA-like su 98.5 1.2E-06 2.7E-11 84.1 12.4 96 287-394 69-173 (175)
179 PLN03110 Rab GTPase; Provision 98.5 2E-06 4.4E-11 87.0 14.4 91 287-394 81-172 (216)
180 cd04177 RSR1 RSR1 subgroup. R 98.5 1.5E-06 3.2E-11 83.5 12.7 91 288-393 70-161 (168)
181 cd01899 Ygr210 Ygr210 subfamil 98.5 1.7E-06 3.6E-11 93.1 14.2 64 332-405 214-278 (318)
182 cd01896 DRG The developmentall 98.5 3.4E-07 7.3E-12 94.1 8.5 50 333-396 177-226 (233)
183 PRK12736 elongation factor Tu; 98.5 1.7E-06 3.7E-11 95.6 14.4 97 287-396 95-201 (394)
184 cd04165 GTPBP1_like GTPBP1-lik 98.5 1.8E-06 3.9E-11 88.3 13.4 91 290-394 109-221 (224)
185 PLN00223 ADP-ribosylation fact 98.5 1.3E-06 2.8E-11 85.9 11.9 91 288-394 82-176 (181)
186 PRK00049 elongation factor Tu; 98.5 2E-06 4.3E-11 95.2 14.6 96 287-395 95-202 (396)
187 cd04120 Rab12 Rab12 subfamily. 98.5 2.4E-06 5.2E-11 86.0 13.8 91 287-394 69-161 (202)
188 cd04126 Rab20 Rab20 subfamily. 98.5 2.2E-06 4.8E-11 87.4 13.8 98 288-394 65-188 (220)
189 cd01900 YchF YchF subfamily. 98.5 1.7E-07 3.8E-12 98.6 5.6 58 401-464 1-76 (274)
190 PRK12735 elongation factor Tu; 98.5 2.2E-06 4.7E-11 94.8 14.4 96 287-395 95-202 (396)
191 cd00882 Ras_like_GTPase Ras-li 98.5 3E-06 6.6E-11 76.5 12.9 91 288-392 66-156 (157)
192 PRK09601 GTP-binding protein Y 98.4 4.2E-07 9.1E-12 99.0 8.4 60 399-464 3-80 (364)
193 cd04117 Rab15 Rab15 subfamily. 98.4 4.5E-06 9.7E-11 79.9 14.5 90 288-394 70-160 (161)
194 PRK05124 cysN sulfate adenylyl 98.4 2.6E-06 5.6E-11 96.4 14.9 90 287-388 127-217 (474)
195 TIGR00450 mnmE_trmE_thdF tRNA 98.4 4.8E-07 1E-11 101.3 8.9 63 396-463 201-264 (442)
196 TIGR01393 lepA GTP-binding pro 98.4 1.2E-06 2.6E-11 101.6 12.2 103 270-397 78-181 (595)
197 PRK00089 era GTPase Era; Revie 98.4 2.9E-07 6.3E-12 97.1 6.5 61 399-464 6-67 (292)
198 TIGR00991 3a0901s02IAP34 GTP-b 98.4 3.2E-07 7E-12 97.7 6.8 79 381-464 21-100 (313)
199 KOG1423 Ras-like GTPase ERA [C 98.4 2.5E-07 5.5E-12 96.9 5.8 62 399-465 73-135 (379)
200 cd04146 RERG_RasL11_like RERG/ 98.4 1.2E-06 2.5E-11 83.8 9.9 92 288-394 69-162 (165)
201 cd04148 RGK RGK subfamily. Th 98.4 2.7E-06 5.9E-11 86.5 13.1 89 290-394 72-161 (221)
202 PLN03108 Rab family protein; P 98.4 4.9E-06 1.1E-10 83.7 14.6 89 288-393 76-165 (210)
203 cd04143 Rhes_like Rhes_like su 98.4 5E-06 1.1E-10 86.3 15.0 98 288-395 69-170 (247)
204 COG1084 Predicted GTPase [Gene 98.4 1.4E-06 3E-11 92.5 10.7 163 196-394 162-334 (346)
205 PLN03127 Elongation factor Tu; 98.4 2.7E-06 5.8E-11 95.5 13.5 97 287-396 144-252 (447)
206 PLN03071 GTP-binding nuclear p 98.4 4E-06 8.8E-11 85.1 13.6 88 288-394 83-170 (219)
207 cd01883 EF1_alpha Eukaryotic e 98.4 2.9E-06 6.2E-11 86.1 12.5 89 287-385 97-194 (219)
208 PRK05291 trmE tRNA modificatio 98.4 6.9E-07 1.5E-11 100.4 8.6 61 397-462 214-275 (449)
209 cd04162 Arl9_Arfrp2_like Arl9/ 98.4 1.5E-06 3.3E-11 83.7 9.1 92 287-393 64-163 (164)
210 CHL00189 infB translation init 98.4 3.2E-06 7E-11 99.7 13.5 158 201-394 243-408 (742)
211 PLN03126 Elongation factor Tu; 98.3 5.3E-06 1.1E-10 93.9 14.3 158 203-383 82-249 (478)
212 TIGR00231 small_GTP small GTP- 98.3 3E-06 6.5E-11 77.8 10.2 53 332-392 108-160 (161)
213 PRK15494 era GTPase Era; Provi 98.3 7.1E-07 1.5E-11 96.7 6.8 60 399-463 53-113 (339)
214 TIGR00483 EF-1_alpha translati 98.3 7.7E-06 1.7E-10 91.2 15.2 93 287-388 105-199 (426)
215 cd04130 Wrch_1 Wrch-1 subfamil 98.3 4.5E-06 9.8E-11 80.6 11.6 90 287-392 68-170 (173)
216 TIGR02034 CysN sulfate adenyly 98.3 6.1E-06 1.3E-10 91.6 14.2 99 270-387 88-188 (406)
217 PRK09602 translation-associate 98.3 2.7E-06 5.8E-11 94.1 11.2 62 332-404 217-279 (396)
218 cd04134 Rho3 Rho3 subfamily. 98.3 3.9E-06 8.4E-11 82.8 11.2 92 287-394 68-172 (189)
219 COG1163 DRG Predicted GTPase [ 98.3 9.9E-07 2.1E-11 93.4 7.3 50 333-396 240-289 (365)
220 TIGR00485 EF-Tu translation el 98.3 4.2E-06 9E-11 92.5 12.5 84 287-382 95-179 (394)
221 TIGR03598 GTPase_YsxC ribosome 98.3 1.1E-06 2.3E-11 85.9 7.1 61 398-464 18-78 (179)
222 cd01852 AIG1 AIG1 (avrRpt2-ind 98.3 8.3E-07 1.8E-11 88.2 6.3 164 205-397 3-185 (196)
223 cd01871 Rac1_like Rac1-like su 98.3 8.5E-06 1.8E-10 79.4 13.3 95 287-393 69-172 (174)
224 cd04164 trmE TrmE (MnmE, ThdF, 98.3 1.1E-06 2.5E-11 81.8 6.8 60 399-463 2-62 (157)
225 TIGR03680 eif2g_arch translati 98.3 5.5E-06 1.2E-10 91.9 13.2 97 287-396 100-196 (406)
226 cd04115 Rab33B_Rab33A Rab33B/R 98.3 1.1E-05 2.3E-10 77.8 13.6 90 288-393 73-166 (170)
227 cd04161 Arl2l1_Arl13_like Arl2 98.3 1.1E-05 2.4E-10 77.8 13.5 95 287-392 63-165 (167)
228 PRK05433 GTP-binding protein L 98.3 6.2E-06 1.3E-10 95.8 13.7 166 205-397 10-185 (600)
229 PRK05306 infB translation init 98.3 6E-06 1.3E-10 98.1 13.7 156 201-393 289-449 (787)
230 cd01874 Cdc42 Cdc42 subfamily. 98.3 9.7E-06 2.1E-10 79.1 12.9 95 287-393 69-172 (175)
231 PTZ00327 eukaryotic translatio 98.3 8.5E-06 1.8E-10 91.7 14.0 109 270-397 125-234 (460)
232 cd04168 TetM_like Tet(M)-like 98.3 1E-05 2.2E-10 83.5 13.5 48 287-347 84-131 (237)
233 TIGR00487 IF-2 translation ini 98.3 1.6E-05 3.5E-10 92.1 16.6 154 202-393 87-247 (587)
234 TIGR00491 aIF-2 translation in 98.3 1.1E-05 2.3E-10 93.5 14.9 105 270-393 77-213 (590)
235 PRK00454 engB GTP-binding prot 98.3 1.3E-06 2.8E-11 85.7 6.3 59 399-463 25-83 (196)
236 cd01898 Obg Obg subfamily. Th 98.3 1.1E-06 2.3E-11 83.9 5.5 57 400-462 2-60 (170)
237 PRK12299 obgE GTPase CgtA; Rev 98.3 1.3E-06 2.9E-11 94.5 6.7 59 400-464 160-220 (335)
238 TIGR03156 GTP_HflX GTP-binding 98.3 1.1E-06 2.4E-11 95.8 6.0 58 399-462 190-249 (351)
239 cd01886 EF-G Elongation factor 98.3 3.8E-06 8.2E-11 88.4 9.8 77 287-381 84-160 (270)
240 PRK12296 obgE GTPase CgtA; Rev 98.2 1.2E-06 2.6E-11 99.0 6.3 59 399-463 160-219 (500)
241 TIGR00993 3a0901s04IAP86 chlor 98.2 1.7E-06 3.6E-11 99.5 7.3 62 399-465 119-181 (763)
242 cd04121 Rab40 Rab40 subfamily. 98.2 2E-05 4.4E-10 78.4 14.3 89 288-394 76-165 (189)
243 PF04548 AIG1: AIG1 family; I 98.2 1.6E-06 3.5E-11 87.7 6.5 62 400-465 2-64 (212)
244 smart00176 RAN Ran (Ras-relate 98.2 2.6E-05 5.6E-10 78.4 14.6 90 287-395 64-153 (200)
245 PRK04213 GTP-binding protein; 98.2 1.5E-06 3.3E-11 86.0 5.7 54 399-461 10-63 (201)
246 PRK12297 obgE GTPase CgtA; Rev 98.2 3.4E-06 7.3E-11 94.0 9.0 57 400-462 160-218 (424)
247 cd01895 EngA2 EngA2 subfamily. 98.2 3.6E-06 7.8E-11 79.5 7.6 62 399-465 3-65 (174)
248 COG0370 FeoB Fe2+ transport sy 98.2 2.1E-06 4.7E-11 98.5 7.1 62 399-466 4-66 (653)
249 PRK11058 GTPase HflX; Provisio 98.2 1.6E-06 3.4E-11 96.9 5.6 57 400-462 199-257 (426)
250 cd04104 p47_IIGP_like p47 (47- 98.2 1.3E-05 2.9E-10 79.9 11.6 94 288-397 78-185 (197)
251 cd01875 RhoG RhoG subfamily. 98.2 3.3E-05 7.2E-10 76.4 14.2 96 287-394 71-175 (191)
252 cd01894 EngA1 EngA1 subfamily. 98.2 2.3E-06 5E-11 79.9 5.5 58 402-464 1-59 (157)
253 cd04170 EF-G_bact Elongation f 98.2 3.3E-05 7.2E-10 80.7 14.5 48 287-347 84-131 (268)
254 cd01897 NOG NOG1 is a nucleola 98.2 3E-06 6.5E-11 80.7 6.1 57 400-462 2-59 (168)
255 PRK04000 translation initiatio 98.1 3.6E-05 7.8E-10 85.7 15.2 98 287-397 105-202 (411)
256 TIGR01394 TypA_BipA GTP-bindin 98.1 2.5E-05 5.3E-10 90.7 14.2 168 205-397 4-192 (594)
257 PF01926 MMR_HSR1: 50S ribosom 98.1 2.5E-06 5.4E-11 77.3 4.7 104 206-341 3-116 (116)
258 TIGR02729 Obg_CgtA Obg family 98.1 3.2E-06 7E-11 91.3 6.2 58 400-463 159-218 (329)
259 cd01879 FeoB Ferrous iron tran 98.1 2.2E-06 4.8E-11 80.4 4.4 56 403-464 1-57 (158)
260 cd04129 Rho2 Rho2 subfamily. 98.1 2.5E-05 5.4E-10 76.8 11.8 91 288-394 70-171 (187)
261 cd01876 YihA_EngB The YihA (En 98.1 5E-06 1.1E-10 77.9 6.4 58 400-463 1-58 (170)
262 cd04163 Era Era subfamily. Er 98.1 6E-06 1.3E-10 77.1 6.7 62 399-465 4-66 (168)
263 PF00025 Arf: ADP-ribosylation 98.1 1.6E-05 3.4E-10 77.9 9.8 96 287-393 78-173 (175)
264 COG4917 EutP Ethanolamine util 98.1 1.9E-05 4.1E-10 73.3 9.5 138 206-394 5-144 (148)
265 cd04131 Rnd Rnd subfamily. Th 98.1 6.4E-05 1.4E-09 73.8 13.9 91 287-393 69-173 (178)
266 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.1 8E-05 1.7E-09 76.8 14.9 92 287-394 81-186 (232)
267 cd04133 Rop_like Rop subfamily 98.1 3.8E-05 8.2E-10 75.5 12.0 92 287-394 69-171 (176)
268 cd04171 SelB SelB subfamily. 98.1 6.6E-06 1.4E-10 77.5 6.4 58 400-460 2-61 (164)
269 KOG1547 Septin CDC10 and relat 98.1 5.8E-06 1.3E-10 84.3 6.2 83 381-464 26-118 (336)
270 PRK10218 GTP-binding protein; 98.1 3.5E-05 7.5E-10 89.6 13.4 107 270-397 76-196 (607)
271 cd01881 Obg_like The Obg-like 98.1 3.3E-06 7.1E-11 80.7 4.1 54 403-462 1-56 (176)
272 PRK09554 feoB ferrous iron tra 98.0 8E-06 1.7E-10 97.3 8.0 60 399-464 4-64 (772)
273 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 8.8E-05 1.9E-09 73.3 14.2 91 287-393 73-177 (182)
274 cd01882 BMS1 Bms1. Bms1 is an 98.0 5.7E-05 1.2E-09 77.3 12.8 82 287-382 100-182 (225)
275 COG3596 Predicted GTPase [Gene 98.0 2.7E-06 5.9E-11 88.5 3.1 80 382-465 23-102 (296)
276 TIGR00484 EF-G translation elo 98.0 2.6E-05 5.6E-10 92.2 11.5 78 287-382 95-172 (689)
277 PRK12739 elongation factor G; 98.0 2.8E-05 6.1E-10 91.9 11.3 78 287-382 93-170 (691)
278 cd01896 DRG The developmentall 98.0 1.1E-05 2.3E-10 83.1 6.5 58 400-463 2-60 (233)
279 PRK09602 translation-associate 98.0 7E-06 1.5E-10 90.9 5.4 38 400-443 3-40 (396)
280 cd01885 EF2 EF2 (for archaea a 98.0 6.3E-05 1.4E-09 77.0 11.8 96 270-384 81-200 (222)
281 cd04104 p47_IIGP_like p47 (47- 98.0 7.9E-06 1.7E-10 81.5 5.0 65 399-464 2-66 (197)
282 cd04167 Snu114p Snu114p subfam 98.0 5.7E-05 1.2E-09 76.1 11.0 86 287-385 91-192 (213)
283 PRK00007 elongation factor G; 97.9 2.6E-05 5.6E-10 92.3 9.7 77 287-381 95-171 (693)
284 TIGR00231 small_GTP small GTP- 97.9 1.8E-05 4E-10 72.5 6.7 56 399-460 2-60 (161)
285 PF00071 Ras: Ras family; Int 97.9 0.00011 2.5E-09 69.4 12.3 89 288-393 69-158 (162)
286 cd01861 Rab6 Rab6 subfamily. 97.9 1.9E-05 4.1E-10 74.5 6.8 55 400-460 2-59 (161)
287 PRK04004 translation initiatio 97.9 5.9E-05 1.3E-09 87.5 12.0 92 287-392 91-214 (586)
288 cd01878 HflX HflX subfamily. 97.9 1.2E-05 2.7E-10 79.8 5.4 58 399-462 42-101 (204)
289 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 1.7E-05 3.6E-10 75.4 6.0 56 400-461 2-61 (168)
290 PF05049 IIGP: Interferon-indu 97.9 1.9E-05 4.1E-10 86.4 6.8 68 397-465 34-101 (376)
291 PTZ00099 rab6; Provisional 97.9 9.5E-05 2.1E-09 72.7 11.1 93 287-396 49-142 (176)
292 PRK09601 GTP-binding protein Y 97.9 0.00017 3.8E-09 78.8 14.0 93 203-302 3-108 (364)
293 TIGR02836 spore_IV_A stage IV 97.9 2E-05 4.3E-10 86.6 6.7 81 386-466 5-107 (492)
294 COG1163 DRG Predicted GTPase [ 97.9 1.3E-05 2.8E-10 85.1 4.8 59 399-463 64-123 (365)
295 KOG0462 Elongation factor-type 97.9 0.00011 2.3E-09 82.5 12.0 131 241-397 105-236 (650)
296 cd01851 GBP Guanylate-binding 97.9 2.3E-05 5E-10 80.2 6.3 62 400-465 9-75 (224)
297 PTZ00132 GTP-binding nuclear p 97.9 0.00046 9.9E-09 69.4 15.5 109 289-416 80-193 (215)
298 cd04166 CysN_ATPS CysN_ATPS su 97.8 1.8E-05 3.9E-10 79.6 5.1 62 400-461 1-88 (208)
299 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.8 0.00032 6.8E-09 71.9 14.2 95 287-393 69-173 (222)
300 cd01899 Ygr210 Ygr210 subfamil 97.8 2.3E-05 5E-10 84.3 6.0 36 401-442 1-36 (318)
301 cd00880 Era_like Era (E. coli 97.8 3.3E-05 7.2E-10 70.8 5.5 58 403-465 1-60 (163)
302 PRK12740 elongation factor G; 97.8 0.00018 4E-09 84.7 13.1 26 373-398 239-264 (668)
303 COG0012 Predicted GTPase, prob 97.8 3.3E-05 7.2E-10 83.7 6.2 84 399-491 3-105 (372)
304 PTZ00141 elongation factor 1- 97.8 0.00023 5.1E-09 80.1 13.0 101 270-386 93-203 (446)
305 PTZ00258 GTP-binding protein; 97.7 0.00043 9.2E-09 76.5 14.3 110 332-465 220-337 (390)
306 PRK13768 GTPase; Provisional 97.7 0.00016 3.5E-09 75.4 10.4 97 291-398 129-249 (253)
307 PRK00741 prfC peptide chain re 97.7 0.00039 8.4E-09 79.8 14.4 47 287-346 99-145 (526)
308 cd00881 GTP_translation_factor 97.7 3.7E-05 7.9E-10 74.2 5.1 62 400-461 1-73 (189)
309 cd01850 CDC_Septin CDC/Septin. 97.7 6.2E-05 1.4E-09 79.4 7.2 65 399-463 5-76 (276)
310 cd04145 M_R_Ras_like M-Ras/R-R 97.7 7.1E-05 1.5E-09 70.7 6.6 56 399-461 3-61 (164)
311 cd01889 SelB_euk SelB subfamil 97.7 3.7E-05 8E-10 75.9 4.9 61 400-460 2-78 (192)
312 KOG0075 GTP-binding ADP-ribosy 97.7 0.00014 3.1E-09 69.3 8.3 152 207-395 25-181 (186)
313 PRK13351 elongation factor G; 97.7 0.00035 7.7E-09 82.7 13.4 48 287-347 93-140 (687)
314 COG0532 InfB Translation initi 97.7 0.00032 6.9E-09 79.0 12.0 103 270-394 63-168 (509)
315 cd04160 Arfrp1 Arfrp1 subfamil 97.7 6.1E-05 1.3E-09 71.6 5.5 59 400-461 1-61 (167)
316 cd01868 Rab11_like Rab11-like. 97.6 0.0001 2.2E-09 70.1 6.8 57 399-461 4-63 (165)
317 cd04138 H_N_K_Ras_like H-Ras/N 97.6 9E-05 1.9E-09 69.5 6.3 55 400-461 3-60 (162)
318 COG0481 LepA Membrane GTPase L 97.6 0.00029 6.3E-09 78.1 11.0 103 270-397 84-187 (603)
319 cd04155 Arl3 Arl3 subfamily. 97.6 0.00011 2.5E-09 70.3 7.0 56 398-461 14-69 (173)
320 PF00735 Septin: Septin; Inte 97.6 9.2E-05 2E-09 78.4 6.5 65 399-463 5-76 (281)
321 smart00173 RAS Ras subfamily o 97.6 9.9E-05 2.2E-09 70.0 5.8 56 400-462 2-60 (164)
322 PLN00043 elongation factor 1-a 97.6 0.00089 1.9E-08 75.5 14.4 100 270-386 93-203 (447)
323 cd01873 RhoBTB RhoBTB subfamil 97.6 0.0004 8.8E-09 69.4 10.4 90 287-393 84-193 (195)
324 cd00154 Rab Rab family. Rab G 97.6 0.00015 3.2E-09 67.1 6.8 58 400-461 2-60 (159)
325 cd04119 RJL RJL (RabJ-Like) su 97.6 0.00016 3.6E-09 68.1 6.9 56 400-461 2-60 (168)
326 cd04139 RalA_RalB RalA/RalB su 97.6 0.00012 2.6E-09 68.9 5.9 55 400-461 2-59 (164)
327 smart00178 SAR Sar1p-like memb 97.6 0.00017 3.8E-09 70.8 7.2 57 397-461 16-72 (184)
328 TIGR00437 feoB ferrous iron tr 97.6 0.0001 2.3E-09 85.6 6.5 53 405-463 1-54 (591)
329 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 0.00016 3.5E-09 70.1 6.8 56 398-461 15-70 (174)
330 cd04157 Arl6 Arl6 subfamily. 97.6 0.00014 3E-09 68.6 6.1 56 400-461 1-56 (162)
331 cd01866 Rab2 Rab2 subfamily. 97.5 0.00015 3.3E-09 69.6 6.5 56 399-460 5-63 (168)
332 KOG0410 Predicted GTP binding 97.5 0.00016 3.4E-09 76.9 7.0 85 288-394 255-339 (410)
333 COG0536 Obg Predicted GTPase [ 97.5 0.00012 2.6E-09 78.4 6.2 60 400-467 161-224 (369)
334 KOG1490 GTP-binding protein CR 97.5 0.00046 9.9E-09 77.0 10.8 86 291-388 248-333 (620)
335 TIGR00092 GTP-binding protein 97.5 0.00019 4.1E-09 78.6 7.8 62 399-465 3-82 (368)
336 cd01863 Rab18 Rab18 subfamily. 97.5 0.00018 3.9E-09 68.0 6.7 58 400-461 2-60 (161)
337 cd04175 Rap1 Rap1 subgroup. T 97.5 0.00015 3.3E-09 68.9 6.2 56 400-462 3-61 (164)
338 cd04136 Rap_like Rap-like subf 97.5 0.00014 3E-09 68.7 5.8 56 400-462 3-61 (163)
339 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00019 4.1E-09 68.4 6.7 56 400-461 4-62 (166)
340 cd00878 Arf_Arl Arf (ADP-ribos 97.5 0.00016 3.4E-09 68.3 5.9 54 400-461 1-54 (158)
341 smart00175 RAB Rab subfamily o 97.5 0.00021 4.5E-09 67.4 6.8 55 400-460 2-59 (164)
342 cd01886 EF-G Elongation factor 97.5 0.00014 3.1E-09 76.5 6.2 63 400-462 1-76 (270)
343 cd04106 Rab23_lke Rab23-like s 97.5 0.00019 4.2E-09 67.7 6.5 55 400-460 2-61 (162)
344 cd01860 Rab5_related Rab5-rela 97.5 0.00019 4.1E-09 67.9 6.4 58 399-460 2-60 (163)
345 KOG1491 Predicted GTP-binding 97.5 0.00022 4.8E-09 76.2 7.3 66 399-470 21-104 (391)
346 cd01890 LepA LepA subfamily. 97.5 0.00013 2.7E-09 70.4 5.2 63 400-462 2-79 (179)
347 COG5256 TEF1 Translation elong 97.5 0.0012 2.6E-08 72.5 13.0 165 205-387 10-202 (428)
348 cd04142 RRP22 RRP22 subfamily. 97.5 0.00016 3.5E-09 72.3 5.9 57 400-462 2-61 (198)
349 cd04123 Rab21 Rab21 subfamily. 97.5 0.00025 5.5E-09 66.4 6.7 55 400-460 2-59 (162)
350 cd04113 Rab4 Rab4 subfamily. 97.5 0.00025 5.3E-09 67.2 6.7 23 400-422 2-24 (161)
351 cd04154 Arl2 Arl2 subfamily. 97.5 0.00023 5E-09 68.7 6.4 56 398-461 14-69 (173)
352 cd04159 Arl10_like Arl10-like 97.4 0.0002 4.3E-09 66.4 5.6 55 400-461 1-55 (159)
353 PRK12317 elongation factor 1-a 97.4 0.00013 2.7E-09 81.5 5.0 64 398-461 6-95 (425)
354 COG1217 TypA Predicted membran 97.4 0.0011 2.4E-08 73.5 11.8 156 213-397 16-196 (603)
355 cd01864 Rab19 Rab19 subfamily. 97.4 0.00026 5.7E-09 67.5 6.4 23 399-421 4-26 (165)
356 cd04156 ARLTS1 ARLTS1 subfamil 97.4 0.00022 4.9E-09 67.2 5.8 55 400-461 1-55 (160)
357 cd00876 Ras Ras family. The R 97.4 0.00022 4.7E-09 66.7 5.6 56 400-462 1-59 (160)
358 cd01891 TypA_BipA TypA (tyrosi 97.4 0.00021 4.5E-09 70.7 5.6 63 400-462 4-77 (194)
359 cd04137 RheB Rheb (Ras Homolog 97.4 0.00024 5.2E-09 68.7 5.7 24 399-422 2-25 (180)
360 cd01862 Rab7 Rab7 subfamily. 97.4 0.00035 7.7E-09 66.5 6.8 23 400-422 2-24 (172)
361 KOG0073 GTP-binding ADP-ribosy 97.4 0.0018 4E-08 62.9 11.4 150 203-388 17-170 (185)
362 PRK15467 ethanolamine utilizat 97.4 0.00016 3.5E-09 69.7 4.2 23 400-422 3-25 (158)
363 cd00879 Sar1 Sar1 subfamily. 97.4 0.00042 9.1E-09 67.7 7.2 57 397-461 18-74 (190)
364 KOG1489 Predicted GTP-binding 97.4 0.00022 4.7E-09 75.7 5.4 65 400-470 198-264 (366)
365 COG5257 GCD11 Translation init 97.4 0.00071 1.5E-08 72.0 9.1 94 288-397 107-203 (415)
366 cd01884 EF_Tu EF-Tu subfamily. 97.3 0.00025 5.5E-09 71.1 5.3 63 399-461 3-76 (195)
367 TIGR02528 EutP ethanolamine ut 97.3 0.00021 4.5E-09 66.5 4.4 23 400-422 2-24 (142)
368 cd01867 Rab8_Rab10_Rab13_like 97.3 0.0004 8.7E-09 66.5 6.5 24 399-422 4-27 (167)
369 cd04144 Ras2 Ras2 subfamily. 97.3 0.0003 6.5E-09 69.3 5.7 55 400-461 1-58 (190)
370 KOG2486 Predicted GTPase [Gene 97.3 0.00029 6.3E-09 73.6 5.7 63 398-465 136-198 (320)
371 COG2895 CysN GTPases - Sulfate 97.3 0.00087 1.9E-08 72.1 9.3 96 270-386 94-193 (431)
372 KOG0092 GTPase Rab5/YPT51 and 97.3 0.0011 2.3E-08 66.0 9.2 97 285-398 72-169 (200)
373 KOG1145 Mitochondrial translat 97.3 0.0041 8.8E-08 70.3 14.7 99 270-393 209-313 (683)
374 PLN03118 Rab family protein; P 97.3 0.00039 8.5E-09 69.7 6.3 57 399-462 15-74 (211)
375 cd04112 Rab26 Rab26 subfamily. 97.3 0.00044 9.5E-09 68.2 6.4 23 400-422 2-24 (191)
376 cd04169 RF3 RF3 subfamily. Pe 97.3 0.0023 5E-08 67.3 12.2 49 287-348 91-139 (267)
377 cd04146 RERG_RasL11_like RERG/ 97.3 0.00029 6.3E-09 67.2 5.0 56 400-462 1-59 (165)
378 CHL00071 tufA elongation facto 97.3 0.00029 6.2E-09 78.4 5.6 64 398-461 12-86 (409)
379 KOG1490 GTP-binding protein CR 97.3 0.00015 3.2E-09 80.7 3.2 62 397-466 167-231 (620)
380 cd01865 Rab3 Rab3 subfamily. 97.3 0.00056 1.2E-08 65.4 6.9 23 400-422 3-25 (165)
381 TIGR00503 prfC peptide chain r 97.3 0.00092 2E-08 76.8 9.7 72 287-376 100-171 (527)
382 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.00044 9.5E-09 66.7 6.1 54 400-461 1-54 (167)
383 cd00157 Rho Rho (Ras homology) 97.3 0.00062 1.3E-08 64.7 7.0 23 400-422 2-24 (171)
384 cd04135 Tc10 TC10 subfamily. 97.3 0.00058 1.2E-08 65.5 6.8 56 400-462 2-60 (174)
385 cd04177 RSR1 RSR1 subgroup. R 97.3 0.00046 1E-08 66.2 6.1 56 400-462 3-61 (168)
386 cd04116 Rab9 Rab9 subfamily. 97.3 0.0006 1.3E-08 65.2 6.8 24 399-422 6-29 (170)
387 COG2262 HflX GTPases [General 97.3 0.0003 6.4E-09 77.1 5.0 57 400-462 194-252 (411)
388 cd04114 Rab30 Rab30 subfamily. 97.3 0.00063 1.4E-08 64.8 6.8 57 399-461 8-67 (169)
389 cd04140 ARHI_like ARHI subfami 97.3 0.00038 8.2E-09 66.6 5.2 59 400-462 3-61 (165)
390 cd04124 RabL2 RabL2 subfamily. 97.2 0.00071 1.5E-08 64.6 6.9 23 400-422 2-24 (161)
391 KOG2655 Septin family protein 97.2 0.00047 1E-08 75.0 6.0 66 399-464 22-93 (366)
392 cd04158 ARD1 ARD1 subfamily. 97.2 0.00061 1.3E-08 65.7 6.3 53 400-462 1-55 (169)
393 PRK05506 bifunctional sulfate 97.2 0.00027 5.8E-09 82.9 4.5 39 386-424 11-50 (632)
394 COG5019 CDC3 Septin family pro 97.2 0.00046 9.9E-09 74.7 5.7 65 398-463 23-95 (373)
395 TIGR00487 IF-2 translation ini 97.2 0.00094 2E-08 77.6 8.7 58 398-461 87-146 (587)
396 cd01893 Miro1 Miro1 subfamily. 97.2 0.00044 9.4E-09 66.3 5.0 57 400-461 2-58 (166)
397 cd04151 Arl1 Arl1 subfamily. 97.2 0.00062 1.3E-08 64.5 5.9 54 400-461 1-54 (158)
398 cd04103 Centaurin_gamma Centau 97.2 0.0018 3.9E-08 62.2 9.1 90 289-393 64-156 (158)
399 cd04101 RabL4 RabL4 (Rab-like4 97.2 0.00039 8.4E-09 65.9 4.4 22 400-421 2-23 (164)
400 PRK14845 translation initiatio 97.2 0.0071 1.5E-07 74.3 16.0 95 287-394 546-671 (1049)
401 TIGR00484 EF-G translation elo 97.2 0.00051 1.1E-08 81.4 6.2 65 399-463 11-88 (689)
402 cd04109 Rab28 Rab28 subfamily. 97.2 0.00085 1.8E-08 67.7 6.9 56 400-461 2-61 (215)
403 cd04176 Rap2 Rap2 subgroup. T 97.2 0.00075 1.6E-08 64.0 6.1 55 400-461 3-60 (163)
404 cd04115 Rab33B_Rab33A Rab33B/R 97.1 0.00096 2.1E-08 64.2 6.8 24 399-422 3-26 (170)
405 cd04149 Arf6 Arf6 subfamily. 97.1 0.00079 1.7E-08 65.1 6.2 56 398-461 9-64 (168)
406 cd04170 EF-G_bact Elongation f 97.1 0.00063 1.4E-08 71.1 5.9 23 400-422 1-23 (268)
407 cd04127 Rab27A Rab27a subfamil 97.1 0.00085 1.8E-08 64.8 6.3 24 399-422 5-28 (180)
408 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.1 0.0021 4.7E-08 64.1 8.9 96 287-397 91-186 (221)
409 cd04147 Ras_dva Ras-dva subfam 97.1 0.00077 1.7E-08 66.9 5.7 55 400-461 1-58 (198)
410 PRK12735 elongation factor Tu; 97.1 0.00062 1.3E-08 75.5 5.5 65 397-461 11-86 (396)
411 cd04111 Rab39 Rab39 subfamily. 97.1 0.00097 2.1E-08 67.3 6.5 57 399-461 3-63 (211)
412 smart00174 RHO Rho (Ras homolo 97.1 0.0011 2.4E-08 63.5 6.6 22 401-422 1-22 (174)
413 cd04108 Rab36_Rab34 Rab34/Rab3 97.1 0.0012 2.7E-08 63.9 6.9 56 400-461 2-60 (170)
414 cd04122 Rab14 Rab14 subfamily. 97.1 0.0011 2.4E-08 63.3 6.5 24 399-422 3-26 (166)
415 cd04110 Rab35 Rab35 subfamily. 97.1 0.0011 2.3E-08 66.0 6.5 24 399-422 7-30 (199)
416 cd04118 Rab24 Rab24 subfamily. 97.1 0.0012 2.6E-08 64.8 6.7 23 400-422 2-24 (193)
417 cd01870 RhoA_like RhoA-like su 97.1 0.0012 2.6E-08 63.3 6.5 24 399-422 2-25 (175)
418 PF10662 PduV-EutP: Ethanolami 97.0 0.00069 1.5E-08 64.8 4.6 23 400-422 3-25 (143)
419 PRK00007 elongation factor G; 97.0 0.00078 1.7E-08 79.9 6.0 63 399-461 11-86 (693)
420 PTZ00133 ADP-ribosylation fact 97.0 0.0017 3.7E-08 63.8 7.3 56 398-461 17-72 (182)
421 cd04107 Rab32_Rab38 Rab38/Rab3 97.0 0.0015 3.2E-08 65.0 6.9 23 400-422 2-24 (201)
422 cd04168 TetM_like Tet(M)-like 97.0 0.0013 2.8E-08 67.9 6.6 63 400-462 1-76 (237)
423 PLN03110 Rab GTPase; Provision 97.0 0.0015 3.3E-08 66.1 6.9 57 399-461 13-72 (216)
424 cd04130 Wrch_1 Wrch-1 subfamil 97.0 0.0016 3.5E-08 62.8 6.8 56 400-462 2-60 (173)
425 cd04132 Rho4_like Rho4-like su 97.0 0.0016 3.6E-08 63.4 6.9 23 400-422 2-24 (187)
426 cd04125 RabA_like RabA-like su 97.0 0.0017 3.6E-08 63.7 6.9 23 400-422 2-24 (188)
427 PTZ00369 Ras-like protein; Pro 97.0 0.0013 2.7E-08 64.8 6.1 24 399-422 6-29 (189)
428 PF08477 Miro: Miro-like prote 97.0 0.00099 2.1E-08 59.9 4.8 59 400-461 1-61 (119)
429 TIGR00475 selB selenocysteine- 97.0 0.0011 2.5E-08 77.0 6.5 58 400-460 2-60 (581)
430 cd00882 Ras_like_GTPase Ras-li 97.0 0.00067 1.4E-08 61.0 3.6 54 403-462 1-57 (157)
431 COG0012 Predicted GTPase, prob 97.0 0.0011 2.5E-08 72.0 5.9 98 202-302 2-109 (372)
432 PLN03127 Elongation factor Tu; 97.0 0.001 2.3E-08 74.9 5.8 64 398-461 61-135 (447)
433 cd04105 SR_beta Signal recogni 96.9 0.0082 1.8E-07 60.3 11.4 55 289-348 70-125 (203)
434 TIGR00991 3a0901s02IAP34 GTP-b 96.9 0.0025 5.4E-08 68.4 7.9 129 200-348 36-169 (313)
435 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.9 0.0014 2.9E-08 64.4 5.6 57 399-460 4-62 (183)
436 cd00877 Ran Ran (Ras-related n 96.9 0.0021 4.5E-08 61.9 6.8 22 400-421 2-23 (166)
437 PRK12739 elongation factor G; 96.9 0.00099 2.2E-08 79.0 5.4 63 399-461 9-84 (691)
438 cd04150 Arf1_5_like Arf1-Arf5- 96.9 0.0018 3.8E-08 62.0 6.1 54 400-461 2-55 (159)
439 cd01883 EF1_alpha Eukaryotic e 96.9 0.0011 2.4E-08 67.3 4.9 62 400-461 1-88 (219)
440 cd04169 RF3 RF3 subfamily. Pe 96.9 0.0017 3.8E-08 68.2 6.5 25 399-423 3-27 (267)
441 PF08477 Miro: Miro-like prote 96.9 0.0019 4.2E-08 58.0 5.8 49 288-343 71-119 (119)
442 cd04117 Rab15 Rab15 subfamily. 96.9 0.0025 5.4E-08 60.9 6.7 23 400-422 2-24 (161)
443 COG2229 Predicted GTPase [Gene 96.8 0.018 3.9E-07 57.1 12.4 102 269-394 75-176 (187)
444 PRK00049 elongation factor Tu; 96.8 0.0013 2.9E-08 72.9 4.9 64 398-461 12-86 (396)
445 KOG0461 Selenocysteine-specifi 96.8 0.0066 1.4E-07 65.2 9.6 94 288-394 91-191 (522)
446 cd04105 SR_beta Signal recogni 96.8 0.0025 5.5E-08 64.0 6.2 55 400-461 2-59 (203)
447 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.8 0.0029 6.2E-08 61.5 6.4 24 399-422 3-26 (172)
448 PLN03071 GTP-binding nuclear p 96.8 0.0028 6E-08 64.4 6.5 58 399-462 14-74 (219)
449 PLN03108 Rab family protein; P 96.7 0.0029 6.4E-08 63.6 6.6 57 399-461 7-66 (210)
450 smart00053 DYNc Dynamin, GTPas 96.7 0.0041 8.9E-08 64.5 7.8 77 384-460 4-135 (240)
451 COG1100 GTPase SAR1 and relate 96.7 0.017 3.7E-07 57.6 12.0 98 288-394 75-183 (219)
452 cd01874 Cdc42 Cdc42 subfamily. 96.7 0.0035 7.7E-08 61.1 6.9 56 400-462 3-61 (175)
453 CHL00189 infB translation init 96.7 0.0019 4E-08 76.8 5.7 58 398-461 244-306 (742)
454 cd01850 CDC_Septin CDC/Septin. 96.7 0.007 1.5E-07 64.0 9.4 72 289-378 113-184 (276)
455 cd04102 RabL3 RabL3 (Rab-like3 96.7 0.034 7.3E-07 56.2 13.9 58 287-347 74-144 (202)
456 cd04162 Arl9_Arfrp2_like Arl9/ 96.7 0.0026 5.5E-08 61.3 5.6 56 400-462 1-56 (164)
457 cd01900 YchF YchF subfamily. 96.7 0.0012 2.5E-08 69.9 3.4 29 206-235 2-31 (274)
458 COG1100 GTPase SAR1 and relate 96.7 0.0018 3.9E-08 64.6 4.3 60 399-462 6-66 (219)
459 PLN00223 ADP-ribosylation fact 96.6 0.0032 6.9E-08 61.9 5.9 55 398-460 17-71 (181)
460 TIGR00485 EF-Tu translation el 96.6 0.0021 4.6E-08 71.1 5.2 64 398-461 12-86 (394)
461 cd04143 Rhes_like Rhes_like su 96.6 0.0029 6.3E-08 65.8 5.8 55 400-461 2-59 (247)
462 COG3276 SelB Selenocysteine-sp 96.6 0.011 2.5E-07 65.4 10.6 92 287-395 70-161 (447)
463 PRK12736 elongation factor Tu; 96.6 0.0022 4.8E-08 71.1 5.2 64 397-460 11-85 (394)
464 KOG0410 Predicted GTP binding 96.6 0.0011 2.3E-08 70.8 2.5 58 399-462 179-238 (410)
465 smart00177 ARF ARF-like small 96.6 0.0037 8E-08 60.8 6.2 56 398-461 13-68 (175)
466 PF00009 GTP_EFTU: Elongation 96.6 0.00093 2E-08 65.9 1.8 63 399-461 4-81 (188)
467 PRK09866 hypothetical protein; 96.6 0.0039 8.5E-08 72.3 7.0 42 385-426 56-97 (741)
468 PRK05306 infB translation init 96.6 0.0033 7.1E-08 75.3 6.6 59 398-462 290-349 (787)
469 PLN03126 Elongation factor Tu; 96.6 0.0029 6.3E-08 71.9 5.8 65 397-461 80-155 (478)
470 TIGR00483 EF-1_alpha translati 96.5 0.0029 6.4E-08 70.7 5.5 63 398-460 7-95 (426)
471 cd01871 Rac1_like Rac1-like su 96.5 0.0055 1.2E-07 59.7 6.8 24 399-422 2-25 (174)
472 KOG1486 GTP-binding protein DR 96.5 0.003 6.6E-08 65.3 4.9 73 377-462 48-121 (364)
473 cd04131 Rnd Rnd subfamily. Th 96.5 0.0065 1.4E-07 59.6 7.1 24 399-422 2-25 (178)
474 cd04148 RGK RGK subfamily. Th 96.5 0.0036 7.8E-08 63.7 5.3 22 400-421 2-23 (221)
475 TIGR00101 ureG urease accessor 96.5 0.0062 1.3E-07 61.3 6.9 54 336-395 141-195 (199)
476 PRK09435 membrane ATPase/prote 96.5 0.0067 1.5E-07 65.9 7.4 60 336-396 198-260 (332)
477 cd04134 Rho3 Rho3 subfamily. 96.5 0.0066 1.4E-07 59.8 6.8 23 400-422 2-24 (189)
478 cd04167 Snu114p Snu114p subfam 96.4 0.0027 5.8E-08 64.0 3.9 23 400-422 2-24 (213)
479 cd04126 Rab20 Rab20 subfamily. 96.4 0.0058 1.3E-07 62.5 6.3 55 400-462 2-56 (220)
480 TIGR00491 aIF-2 translation in 96.4 0.0036 7.9E-08 72.8 5.4 23 400-422 6-28 (590)
481 PRK10512 selenocysteinyl-tRNA- 96.4 0.0053 1.2E-07 71.9 6.7 58 400-460 2-61 (614)
482 PTZ00416 elongation factor 2; 96.4 0.013 2.7E-07 71.2 10.0 46 287-345 112-157 (836)
483 KOG0078 GTP-binding protein SE 96.3 0.015 3.2E-07 58.8 8.5 89 288-393 82-171 (207)
484 PLN00116 translation elongatio 96.3 0.026 5.6E-07 68.6 12.0 95 270-383 106-219 (843)
485 PF00350 Dynamin_N: Dynamin fa 96.3 0.0027 5.8E-08 60.8 2.7 24 401-424 1-24 (168)
486 KOG2486 Predicted GTPase [Gene 96.3 0.0079 1.7E-07 63.2 6.3 161 206-395 140-315 (320)
487 cd01882 BMS1 Bms1. Bms1 is an 96.3 0.0068 1.5E-07 62.0 5.9 55 398-460 39-93 (225)
488 cd04120 Rab12 Rab12 subfamily. 96.3 0.0096 2.1E-07 60.0 6.8 56 400-461 2-60 (202)
489 PRK07560 elongation factor EF- 96.3 0.024 5.3E-07 67.8 11.3 58 270-346 95-153 (731)
490 cd04129 Rho2 Rho2 subfamily. 96.2 0.0096 2.1E-07 58.5 6.6 23 399-421 2-24 (187)
491 KOG0395 Ras-related GTPase [Ge 96.2 0.053 1.2E-06 54.6 11.8 91 288-394 72-163 (196)
492 cd01853 Toc34_like Toc34-like 96.2 0.013 2.8E-07 61.2 7.4 130 200-349 29-166 (249)
493 PF00071 Ras: Ras family; Int 96.1 0.01 2.2E-07 56.0 6.0 23 400-422 1-23 (162)
494 PRK05124 cysN sulfate adenylyl 96.1 0.0096 2.1E-07 67.7 6.7 27 397-423 26-52 (474)
495 KOG1532 GTPase XAB1, interacts 96.1 0.038 8.2E-07 58.1 10.2 91 291-394 148-262 (366)
496 COG3596 Predicted GTPase [Gene 96.1 0.044 9.6E-07 57.7 10.5 99 288-397 115-223 (296)
497 TIGR00073 hypB hydrogenase acc 96.0 0.019 4.1E-07 57.8 7.6 55 334-394 150-205 (207)
498 cd04121 Rab40 Rab40 subfamily. 96.0 0.016 3.4E-07 57.7 6.9 58 399-462 7-67 (189)
499 KOG0394 Ras-related GTPase [Ge 96.0 0.071 1.5E-06 53.1 11.0 93 289-393 80-175 (210)
500 cd04128 Spg1 Spg1p. Spg1p (se 96.0 0.017 3.6E-07 56.9 6.8 23 400-422 2-24 (182)
No 1
>PRK13796 GTPase YqeH; Provisional
Probab=100.00 E-value=7.7e-69 Score=581.13 Aligned_cols=332 Identities=32% Similarity=0.570 Sum_probs=283.4
Q ss_pred ceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005977 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~ 324 (666)
.++|||||+++|||++.. ..+++.+|.+.+... ....++|++|||++|+.+++... |.+..
T Consensus 34 ~~~C~RC~~l~hy~~~~~----~~~~~~~~~~~l~~i------~~~~~lIv~VVD~~D~~~s~~~~--------L~~~~- 94 (365)
T PRK13796 34 EVYCQRCFRLKHYNEIQD----VSLTDDDFLKLLNGI------GDSDALVVNVVDIFDFNGSWIPG--------LHRFV- 94 (365)
T ss_pred CeEchhhhhhhccCcccC----CCCCHHHHHHHHHhh------cccCcEEEEEEECccCCCchhHH--------HHHHh-
Confidence 579999999999998865 346777887766542 22345999999999998876432 22211
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEE
Q 005977 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vv 404 (666)
.++|+++|+||+||+++......+..|++.+.+..|+. +.+++++||++++|+++|++.|.++.. +.++++|
T Consensus 95 ------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-~~~v~~vSAk~g~gI~eL~~~I~~~~~-~~~v~vv 166 (365)
T PRK13796 95 ------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-PVDVVLISAQKGHGIDELLEAIEKYRE-GRDVYVV 166 (365)
T ss_pred ------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-cCcEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEE
Confidence 24589999999999987666677888998888777753 457999999999999999999988754 4589999
Q ss_pred ccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhc
Q 005977 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel 484 (666)
|+||||||||||+|++........+++|..||||++.+.++ ++.+..|+||||+..+.++..+|++++++.+.|++++
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~i 244 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEI 244 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cCCCcEEEECCCccccchhhhcCCHHHHhhcCCCccc
Confidence 99999999999999976533334567899999999998877 6677899999999999998999999999999999999
Q ss_pred cceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccCCCCCcccccccCCccc
Q 005977 485 QPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~PP~~~~~~~~l~~~~~ 564 (666)
+|++|++++||++++|||+|+|++++.. ..|++|+++++++|+|++|+|+++|++|+|..|.||..+ ++.++++|++
T Consensus 245 ~p~~~~l~~gq~l~~ggl~r~d~~~~~~--~~~~~~~~~~l~~H~t~~e~a~~~~~~~~g~~l~pp~~~-~~~~~~~~~~ 321 (365)
T PRK13796 245 KPKTYQLNEEQTLFLGGLARFDYVSGGR--RSFTAYFDNNLNIHRTKLEKADALYEKHLGDLLTPPTKE-ELEDFPPLVR 321 (365)
T ss_pred CceEEEECCCCEEEEeeEEEEEEecCCc--cEEEEEcCCCceeeeccccchhHHHHhhCCCCCCCCchh-HHhhccCcee
Confidence 9999999999999999999999998764 358999999999999999999999999999999999764 5667899999
Q ss_pred eEEEEcccCCCCcccceEEcccceEEEeccCceEEEEEecCCeeEEEeCCCC
Q 005977 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~G~~~i~v~~P~Gv~v~~R~pli 616 (666)
++|.+.+ .+||||+|||||+|++ .+.+++|+|+||+|++|+||+
T Consensus 322 ~~~~~~~------~~Divi~glGwi~v~~--~~~~~~~~p~gv~v~~R~~li 365 (365)
T PRK13796 322 HEFTIKE------KTDIVFSGLGWITVPG--GAKVAAWAPKGVDVVIRKALI 365 (365)
T ss_pred EEEEECC------cccEEEcCCceEEECC--CeEEEEEecCCceEEeecccC
Confidence 9999953 4899999999999986 688999999999999999996
No 2
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=100.00 E-value=3.3e-65 Score=552.00 Aligned_cols=333 Identities=32% Similarity=0.598 Sum_probs=285.4
Q ss_pred ceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005977 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~ 324 (666)
.++|||||+++|||++.+. .+++.+|.+.+.. ....+++|++|+|++|+.+++...+. +.+
T Consensus 28 ~~~C~RC~~l~hy~~~~~~----~~~~e~f~~~l~~------~~~~~~~Il~VvD~~d~~~s~~~~l~----~~~----- 88 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDV----ELNDDDFLNLLNS------LGDSNALIVYVVDIFDFEGSLIPELK----RFV----- 88 (360)
T ss_pred CeeecchhhhhccCccccC----CCCHHHHHHHHhh------cccCCcEEEEEEECcCCCCCccHHHH----HHh-----
Confidence 4689999999999998653 3567777775554 33568899999999999988754322 211
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEE
Q 005977 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vv 404 (666)
..+|+++|+||+||+++......+..|++.+.+..++. ..+++++||++++|+++|++.|.++.. +.++++|
T Consensus 89 ------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~-~~~i~~vSAk~g~gv~eL~~~l~~~~~-~~~v~~v 160 (360)
T TIGR03597 89 ------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK-PVDIILVSAKKGNGIDELLDKIKKARN-KKDVYVV 160 (360)
T ss_pred ------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-cCcEEEecCCCCCCHHHHHHHHHHHhC-CCeEEEE
Confidence 23589999999999988766677889988777777753 346999999999999999999988754 4699999
Q ss_pred ccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhc
Q 005977 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel 484 (666)
|.+|||||||||+|++........+++|..||||++++.+. ++.+..|+||||+..++++...|++++++.+.|++++
T Consensus 161 G~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i 238 (360)
T TIGR03597 161 GVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEI 238 (360)
T ss_pred CCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--eCCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCcc
Confidence 99999999999999987654444578899999999998876 5667899999999999988888999999999999999
Q ss_pred cceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccCCCCCcccccccCCccc
Q 005977 485 QPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~PP~~~~~~~~l~~~~~ 564 (666)
++++|++++||++++|||+|+|++.+. ..+|++|+++.+++|+|++++|+++|++|+|..|.||+. +++.++++|++
T Consensus 239 ~~~~~~l~~~q~~~~ggl~~~d~~~~~--~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~~l~pp~~-~~~~~~~~~~~ 315 (360)
T TIGR03597 239 KPKTYQLNPNQTLFLGGLARFDYLKGE--KTSFTFYVSNELNIHRTKLENADELYNKHLGNLLSPPCL-DDKFNLPELVF 315 (360)
T ss_pred CceEEEeCCCCEEEEceEEEEEEecCC--ceEEEEEccCCceeEeechhhhHHHHHhhcCCcCCCCCh-HHHHhccCcee
Confidence 999999999999999999999999875 346899999999999999999999999999999999954 45677899999
Q ss_pred eEEEEcccCCCCcccceEEcccceEEEeccCceEEEEEecCCeeEEEeCCCC
Q 005977 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~G~~~i~v~~P~Gv~v~~R~pli 616 (666)
++|.+.+ .+||||+|||||+|++ |.+.+++|+|+||+|++|+||+
T Consensus 316 ~~~~~~~------~~divi~glGwi~v~~-~~~~~~~~~p~gv~v~~R~~li 360 (360)
T TIGR03597 316 HTFTIKE------KTDIVFSGLGWITVKR-GGAKVKVYAPKGVGVSLRKALI 360 (360)
T ss_pred EEEEECC------cccEEEecCcEEEEec-CCEEEEEEeCCceEEEEecccC
Confidence 9999963 4899999999999995 5689999999999999999996
No 3
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.5e-62 Score=530.71 Aligned_cols=403 Identities=42% Similarity=0.632 Sum_probs=349.8
Q ss_pred cceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHH-----HHHHH
Q 005977 244 EVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAK-----SLFKK 318 (666)
Q Consensus 244 ~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~-----~L~~~ 318 (666)
.+.||+||+.++||+.++.+..+...|+++|.......+.. ...--.+|+.|+|+.+|.|+++..... .+++.
T Consensus 155 ~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~kt--gyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ 232 (572)
T KOG1249|consen 155 RPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKT--GYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNA 232 (572)
T ss_pred cchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhh--cccHHHHHHHhhheeeccCceeeeeecccchhhHHHH
Confidence 48999999999999999999889899999998765544444 445566999999999999998754332 23333
Q ss_pred HHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 319 LEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 319 L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
|... ...+.+.+.++.+.||+|.++...+..++..|....++..+.++...++.+||++.+|..+|+.........+
T Consensus 233 ll~s---D~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~ag~~ 309 (572)
T KOG1249|consen 233 LLES---DLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGDAGKA 309 (572)
T ss_pred Hhhh---ccccccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhccccc
Confidence 3221 1112244678999999999998888777888877776666655566689999999999999999998888888
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHH
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMV 478 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~ 478 (666)
+.|+.||.++.||+++||+|.......+.+.+.++.||||++.+++.+++..+-++|||||++.++++..+|+.+|+..+
T Consensus 310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v 389 (572)
T KOG1249|consen 310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV 389 (572)
T ss_pred cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence 99999999999999999999976666667788899999999999998888889999999999999999999999999999
Q ss_pred HhhhhccceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccC--CCCCcccc
Q 005977 479 EIRKELQPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQ--PPIGQDRA 556 (666)
Q Consensus 479 ~~~kel~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~--PP~~~~~~ 556 (666)
.|++.|+|++|.+++|+++|+|||+|||+++....+.+||+|+|+.|++|++++++|++||++|+|.+|. ||.+++||
T Consensus 390 ~p~~~lrprtf~vkpG~sl~iGGl~RLDilqa~~~~~~~Tv~as~~Lplhi~~t~~Ae~~y~~~~G~rll~vPp~genRm 469 (572)
T KOG1249|consen 390 TPRRVLRPRTFRVKPGYSLFIGGLVRLDILQASVETQYFTVFASEQLPLHIGPTEEAEAFYEKHLGTRLLLVPPGGENRM 469 (572)
T ss_pred CcccccccceEEcCCCcEEEEeeeEEeehhhccccceEEEEEecCcceeeecchhhHHHHHHHhcCCeeeecCCcchhhH
Confidence 9999999999999999999999999999999988777999999999999999999999999999999986 99999999
Q ss_pred cccCCccceEEEE-cccCCCCc-ccceEEcccceEEEeccCceEEEEEecCCeeEEEe-CCCCCCcccccccCCcchhhh
Q 005977 557 SELGTWKDRKLKV-SGTSWDVN-GIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLR-EPLVLDRAPFLERPGFWLPKA 633 (666)
Q Consensus 557 ~~l~~~~~~~~~i-~~~~~~~~-~~DIvIsGLGWisv~~~G~~~i~v~~P~Gv~v~~R-~pli~~~a~~~~~~~~~~~~~ 633 (666)
.++|.|+.+++.+ .|.+|++. ++||+|||||||+|++.+.+++++|||+|++|++| +||+..+|..+ ||++||+
T Consensus 470 ~ewpgl~~k~~~~~~G~~~d~~~~~DI~lSslGWvsv~~~~~~~L~~~Tp~~~~it~Ri~pllP~~a~~~---G~~i~~S 546 (572)
T KOG1249|consen 470 TEWPGLQGKDGEVMEGRNWDERGSCDIALSSLGWVSVTLKGDATLRAWTPEGAGITARIPPLLPYRASLF---GKRIPKS 546 (572)
T ss_pred hhCCCcccccceeecccccccccccceEecccceEEeecCcceeecccccccCceEEecCcccccchhhc---ceecccc
Confidence 9999999999999 89999998 89999999999999999999999999999999999 89998888887 9999999
Q ss_pred hhhhhc--chhHHHHHHHHhhhh
Q 005977 634 ISDALG--SKSKLEAKRRKKLEE 654 (666)
Q Consensus 634 ~~~~~~--~~~~~~~~~~~~~~~ 654 (666)
++...+ +.+=+..++|||.+.
T Consensus 547 ~ay~~q~~~~p~~~k~~R~k~~k 569 (572)
T KOG1249|consen 547 VAYKTQPIQFPVVIKRVRKKKRK 569 (572)
T ss_pred eeeeecccCcchHHHHhhhhhcc
Confidence 999998 444444455555443
No 4
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.98 E-value=3.7e-32 Score=294.18 Aligned_cols=218 Identities=24% Similarity=0.258 Sum_probs=175.1
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Cc------c
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PD------F 272 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~------~ 272 (666)
...|+||||||||||| |||.++|.++++..+-. ||+|+|+...+...++.+ ++ .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGv----------------TRDr~y~~~~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGV----------------TRDRIYGDAEWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCC----------------ccCCccceeEEcCceEEEEECCCCCcCCch
Confidence 4567899999995555 99999999888777655 999999999887766665 22 2
Q ss_pred hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH
Q 005977 273 DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 273 df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
.+.+.|..|+.. ++.++|+|++|||++. |-. ..|+.+.+.|++ .++|+|||+||+|-...+.
T Consensus 68 ~l~~~i~~Qa~~--Ai~eADvilfvVD~~~--Git--~~D~~ia~~Lr~---------~~kpviLvvNK~D~~~~e~--- 129 (444)
T COG1160 68 ELQELIREQALI--AIEEADVILFVVDGRE--GIT--PADEEIAKILRR---------SKKPVILVVNKIDNLKAEE--- 129 (444)
T ss_pred HHHHHHHHHHHH--HHHhCCEEEEEEeCCC--CCC--HHHHHHHHHHHh---------cCCCEEEEEEcccCchhhh---
Confidence 477788888888 8999999999999998 433 346788888875 4579999999999873222
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC-----------CCccEEEEccCCCChhHHHHhhhcc
Q 005977 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-----------PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~-----------~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
...+ +.++| +.++++|||.+|.|+.+|++.|.+.++ ...++.+||.||||||||+|+|++.
T Consensus 130 ~~~e-----fyslG---~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilge 201 (444)
T COG1160 130 LAYE-----FYSLG---FGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGE 201 (444)
T ss_pred hHHH-----HHhcC---CCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccC
Confidence 1222 24677 778999999999999999999998862 1368999999999999999999998
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcccc
Q 005977 422 EGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 422 ~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~ 467 (666)
+... +|+.||||||.+......+ ..+.+|||.|+++...+.
T Consensus 202 eR~I-----v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 202 ERVI-----VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred ceEE-----ecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 7554 4799999999998776554 468999999999887654
No 5
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=1.4e-32 Score=293.61 Aligned_cols=306 Identities=27% Similarity=0.329 Sum_probs=229.7
Q ss_pred eecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhh
Q 005977 247 VCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDA 326 (666)
Q Consensus 247 ~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~ 326 (666)
.|+||++.+||+.+.. +|++.. ...+++.+ .+..+|+|+.|+|+++|.++....+.+.+
T Consensus 1 ~~~~~~~~~~~~~i~~------~~g~~~--k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v----------- 59 (322)
T COG1161 1 QCQRCFRLKHYNKIQW------FPGHMK--KAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIV----------- 59 (322)
T ss_pred CchhhhHHHhcccccC------CCCchH--HHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHH-----------
Confidence 4999999999988754 254432 12233344 56779999999999999999876544332
Q ss_pred hhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHH--------HHHHhhcCC-
Q 005977 327 KLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLL--------AFIKELAGP- 397 (666)
Q Consensus 327 ~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl--------~~I~~~l~~- 397 (666)
+.++.++|+||+||+|... +.+|++++..+.+.. .+++|++.+.+...+. +.+..+.+.
T Consensus 60 ----~~k~~i~vlNK~DL~~~~~----~~~W~~~~~~~~~~~----~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 127 (322)
T COG1161 60 ----KEKPKLLVLNKADLAPKEV----TKKWKKYFKKEEGIK----PIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKG 127 (322)
T ss_pred ----ccCCcEEEEehhhcCCHHH----HHHHHHHHHhcCCCc----cEEEEeecccCccchHHHHHHHHHHHHHHHhhcC
Confidence 2345699999999999876 899998887665532 7889999998888877 555555443
Q ss_pred ----CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChh
Q 005977 398 ----RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRD 473 (666)
Q Consensus 398 ----~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~ 473 (666)
..+++|||+||||||||||+|+++.. +++|+.||+|++.+.++ +..++.|+||||+..+.+... ..
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~PG~Tk~~q~i~--~~~~i~LlDtPGii~~~~~~~---~~ 197 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRPGTTKGIQWIK--LDDGIYLLDTPGIIPPKFDDD---EL 197 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCCceecceEEEE--cCCCeEEecCCCcCCCCccch---HH
Confidence 36899999999999999999998875 45689999999999887 677899999999999998664 33
Q ss_pred hHHHHHhhhhccceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccCCCCCc
Q 005977 474 EQKMVEIRKELQPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQ 553 (666)
Q Consensus 474 e~~~~~~~kel~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~PP~~~ 553 (666)
...-+.+...++..++.....+..++++++ ++........ +..|.++. .|.++.+.+.+.+.++.|..+.++...
T Consensus 198 v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~-~~~~~~~~~~--~~~y~~~~--~~~~~~~~~l~~~a~~rg~~l~~~g~~ 272 (322)
T COG1161 198 VLLKLAPKGEIKDPVLPADEVAERLLGGLL-IDEHYGEKLN--ITRYESNP--IHRTDPEEFLELIAKKRGWLLLKGGEP 272 (322)
T ss_pred HhhccccccccCccccChHHHHHHHHhhhh-hhhhhhHhhC--Cccccccc--ccccCHHHHHHHHHHHhhhhhcCCCCc
Confidence 455566889999999999988899999887 5554443222 23566555 899999999999999999888777632
Q ss_pred ccccccCCccceEEEEcccCCCCcccceEEcccceEEEeccC--ceEEEEEecCCeeEEEeCCC
Q 005977 554 DRASELGTWKDRKLKVSGTSWDVNGIDIAAAGLGWFSLGLKG--EASLTLWTYDGIEITLREPL 615 (666)
Q Consensus 554 ~~~~~l~~~~~~~~~i~~~~~~~~~~DIvIsGLGWisv~~~G--~~~i~v~~P~Gv~v~~R~pl 615 (666)
+ +.+..+.+ -.|++.+||||+++-... ......|.|+++.+.+|.++
T Consensus 273 d-------~~~~~~~~--------~~d~~~gklg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (322)
T COG1161 273 D-------LERAAETI--------LKDIRNGKLGWFSLEEPEDNIEVVTIRDPEGSVVKARKSL 321 (322)
T ss_pred c-------HHHHHHHH--------HHHHHhCCcceeecCCccccchhhhhhccchhhhhhhccc
Confidence 2 11111111 129999999999997432 24566788888888887654
No 6
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.97 E-value=5.7e-30 Score=252.62 Aligned_cols=186 Identities=43% Similarity=0.666 Sum_probs=138.8
Q ss_pred ecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhh
Q 005977 248 CARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAK 327 (666)
Q Consensus 248 CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~ 327 (666)
|+|||+++|||++... .+|..++.+ ..+.. ...++|+|++|+|++++..+.... +.. ..
T Consensus 1 C~rC~~l~~~~~~~~~----~~~~~~~~~---~~l~~--~~~~ad~il~VvD~~~~~~~~~~~----l~~--~~------ 59 (190)
T cd01855 1 CQRCFRLKHYNKIDPV----EIPDEDFIL---NLLSS--ISPKKALVVHVVDIFDFPGSLIPR----LRL--FG------ 59 (190)
T ss_pred CcchhhhhccCccccc----cCChHHHHH---HHHHh--cccCCcEEEEEEECccCCCccchh----HHH--hc------
Confidence 9999999999998753 234444322 22222 567899999999999977655432 111 11
Q ss_pred hhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-HHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEcc
Q 005977 328 LSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR-AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGA 406 (666)
Q Consensus 328 ~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~-~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~ 406 (666)
..+|+++|+||+|++++......+..|.+.. .+..+.. +..++++||++++|+++|++.|.++++.+.+++++|.
T Consensus 60 ---~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 60 ---GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK-PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred ---CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC-cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 2468999999999987655444456665211 1223321 3469999999999999999999999888889999999
Q ss_pred CCCChhHHHHhhhcccccee---ecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005977 407 QNAGKSTLINTFAKKEGVKV---SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 407 ~NvGKSTLIN~L~~~~~~~~---~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
||||||||||+|++...... ..+++|..||||++...+. ++.++.|||||||
T Consensus 136 ~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--LGNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--cCCCCEEEeCcCC
Confidence 99999999999998654432 3467789999999998876 5557899999997
No 7
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.93 E-value=4.1e-25 Score=211.78 Aligned_cols=148 Identities=31% Similarity=0.401 Sum_probs=114.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+++++|+|++|+|++++.++.... +...|... ..++|+|+|+||+||+++.. +..|+..+.+...
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~----i~~~l~~~-------~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKH----VEEYLKKE-------KPHKHLIFVLNKCDLVPTWV----TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHH----HHHHHHhc-------cCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCCc
Confidence 678899999999999987654433 33444321 02368999999999986542 6778777654322
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc-----CCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA-----GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l-----~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~ 441 (666)
+. ++++||+++.|+++|++.|.+++ +.+.+++++|.||||||||||+|++.... +++..||||++.
T Consensus 70 ---~~-~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~-----~~~~~~g~T~~~ 140 (157)
T cd01858 70 ---TI-AFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVC-----KVAPIPGETKVW 140 (157)
T ss_pred ---EE-EEEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCce-----eeCCCCCeeEeE
Confidence 22 68899999999999999998764 23457889999999999999999976543 447899999998
Q ss_pred EEEeeEeCCceEEEECCCC
Q 005977 442 LRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 442 ~~~~~~l~~~~~liDTPGi 460 (666)
..+. ++.++.|+||||+
T Consensus 141 ~~~~--~~~~~~liDtPGi 157 (157)
T cd01858 141 QYIT--LMKRIYLIDCPGV 157 (157)
T ss_pred EEEE--cCCCEEEEECcCC
Confidence 7766 5678999999997
No 8
>PRK12289 GTPase RsgA; Reviewed
Probab=99.90 E-value=1.1e-23 Score=227.12 Aligned_cols=224 Identities=25% Similarity=0.331 Sum_probs=149.9
Q ss_pred cceeecceecceecceeccccccccc--Ccc-hHHH----HH--HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHH
Q 005977 244 EVTVCARCHSLRNYGQVKNEVAENLI--PDF-DFDR----VI--ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKS 314 (666)
Q Consensus 244 ~~~~CqRC~rLr~ygkv~~~~~q~~i--P~~-df~~----~L--~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~ 314 (666)
....|.+|.+++++++.......+.+ ++. +-.. .+ .+.+.+| .+.++|+|++|+|+.++... +..++++
T Consensus 35 ~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~-~~aNvD~vLlV~d~~~p~~~-~~~LdR~ 112 (352)
T PRK12289 35 SLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRP-PVANADQILLVFALAEPPLD-PWQLSRF 112 (352)
T ss_pred eEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceech-hhhcCCEEEEEEECCCCCCC-HHHHHHH
Confidence 35789999999987753211111111 110 0000 00 1123343 46789999999999876422 3344555
Q ss_pred HHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 315 LFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 315 L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+... .. .+.|+|||+||+||++... +..|...+ +.+|+ .++++||+++.|+++|++.|..
T Consensus 113 L~~a-~~---------~~ip~ILVlNK~DLv~~~~----~~~~~~~~-~~~g~----~v~~iSA~tg~GI~eL~~~L~~- 172 (352)
T PRK12289 113 LVKA-ES---------TGLEIVLCLNKADLVSPTE----QQQWQDRL-QQWGY----QPLFISVETGIGLEALLEQLRN- 172 (352)
T ss_pred HHHH-HH---------CCCCEEEEEEchhcCChHH----HHHHHHHH-HhcCC----eEEEEEcCCCCCHHHHhhhhcc-
Confidence 4332 21 3468999999999985432 56675544 45664 3899999999999999999874
Q ss_pred cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEEeeEeCCceEEEECCCCCCCcccccccCh
Q 005977 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNR 472 (666)
Q Consensus 395 l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~ 472 (666)
..++|+|.||||||||||+|++.....++.++.....| ||++...+. ++.+..|+|||||..+.+. +++
T Consensus 173 ----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l~~g~~liDTPG~~~~~l~---~~~ 243 (352)
T PRK12289 173 ----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--LPNGGLLADTPGFNQPDLD---CSP 243 (352)
T ss_pred ----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--CCCCcEEEeCCCccccccc---cCH
Confidence 25899999999999999999987766554333222233 898886665 5667799999999998872 333
Q ss_pred hhHHHHHhhhhcccee--eEecCCCeeeec
Q 005977 473 DEQKMVEIRKELQPRT--YRVKGGQAVHVG 500 (666)
Q Consensus 473 ~e~~~~~~~kel~p~t--~~lk~gqsl~lg 500 (666)
++ +...++++++.. -.|++..|.|.+
T Consensus 244 ~~--l~~~F~e~~~~~~~~~CrF~dC~H~~ 271 (352)
T PRK12289 244 RE--LAHYFPEARQRLAQGNCQFNDCLHRD 271 (352)
T ss_pred HH--HHhhHHHHHHhHhhCceEccCCccCC
Confidence 33 345566666643 589999999986
No 9
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=5.7e-23 Score=230.32 Aligned_cols=214 Identities=22% Similarity=0.170 Sum_probs=141.5
Q ss_pred ceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch-----
Q 005977 203 FTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d----- 273 (666)
+..++||+||||| +|+|++.+.+.++.... ...++.+.++.+......+. .|+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~----------------~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 102 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDV----------------PGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG 102 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCC----------------CCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh
Confidence 4568899999995 55599998774332221 12244444444333222222 26543
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+..++.. ++..+|+||+|+|+.+... ..+..+...++. .++|+++|+||+|+..... .
T Consensus 103 ~~~~~~~~~~~--~~~~aD~il~VvD~~~~~s----~~~~~i~~~l~~---------~~~piilV~NK~Dl~~~~~--~- 164 (472)
T PRK03003 103 LQASVAEQAEV--AMRTADAVLFVVDATVGAT----ATDEAVARVLRR---------SGKPVILAANKVDDERGEA--D- 164 (472)
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECccCCccch--h-
Confidence 22334444444 5678999999999998432 123455566654 3579999999999864321 1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC----------CccEEEEccCCCChhHHHHhhhcccc
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP----------RGNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~----------~~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
... . ...+ +..++++||++|.|+++|++.|.+.+++ ..+++++|.+|||||||+|+|++...
T Consensus 165 ~~~----~-~~~g---~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~ 236 (472)
T PRK03003 165 AAA----L-WSLG---LGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER 236 (472)
T ss_pred hHH----H-HhcC---CCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 111 1 1334 3457899999999999999998876543 24789999999999999999997653
Q ss_pred ceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 424 VKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 424 ~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
. .++..||||++.+.....+. ..+.++||||+...
T Consensus 237 ~-----~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~ 272 (472)
T PRK03003 237 S-----VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRR 272 (472)
T ss_pred c-----cccCCCCccCCcceEEEEECCEEEEEEECCCcccc
Confidence 3 23689999998765443333 35789999998644
No 10
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=1.3e-22 Score=223.93 Aligned_cols=215 Identities=25% Similarity=0.235 Sum_probs=148.3
Q ss_pred eeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch-----HH
Q 005977 205 PAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD-----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d-----f~ 275 (666)
.++||+||||||+ +|++.+.+.++++. ...+++.+.|+.+......+.+ |++. +.
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~----------------~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSD----------------TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecC----------------CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 3579999999655 59999887443222 1234555555554433333222 6542 33
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
..+..++.. ++..+|+|++|+|+++.. . ..+..+..+|++ .++|+++|+||+|+...... ..
T Consensus 66 ~~~~~~~~~--~~~~ad~vl~vvD~~~~~--~--~~d~~i~~~l~~---------~~~piilVvNK~D~~~~~~~---~~ 127 (429)
T TIGR03594 66 KQIREQAEI--AIEEADVILFVVDGREGL--T--PEDEEIAKWLRK---------SGKPVILVANKIDGKKEDAV---AA 127 (429)
T ss_pred HHHHHHHHH--HHhhCCEEEEEEeCCCCC--C--HHHHHHHHHHHH---------hCCCEEEEEECccCCccccc---HH
Confidence 445555555 678899999999998732 2 234556666765 34689999999999865431 11
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC----------CccEEEEccCCCChhHHHHhhhccccce
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP----------RGNVWVIGAQNAGKSTLINTFAKKEGVK 425 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~----------~~~v~vvG~~NvGKSTLIN~L~~~~~~~ 425 (666)
. ...+| +..++++||++|.|+++|++.+.+.++. ..+++++|.+|||||||+|+|++....
T Consensus 128 ~-----~~~lg---~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~- 198 (429)
T TIGR03594 128 E-----FYSLG---FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERV- 198 (429)
T ss_pred H-----HHhcC---CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCee-
Confidence 1 12455 5569999999999999999999887643 146899999999999999999976533
Q ss_pred eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCccc
Q 005977 426 VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 426 ~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
.++..||||++.+....... ..+.++||||+......
T Consensus 199 ----~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~ 236 (429)
T TIGR03594 199 ----IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKV 236 (429)
T ss_pred ----ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccc
Confidence 23688999999765543333 36889999999866543
No 11
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.88 E-value=2.8e-22 Score=191.86 Aligned_cols=142 Identities=31% Similarity=0.393 Sum_probs=107.7
Q ss_pred CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCC
Q 005977 292 GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLN 371 (666)
Q Consensus 292 DvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~ 371 (666)
|+|++|+|++++.++....+.+ ..+.. .++|+|+|+||+||+++. .+..|+.++.+.. ..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~---~~~~~---------~~~p~IiVlNK~Dl~~~~----~~~~~~~~~~~~~----~~ 60 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER---VLIKE---------KGKKLILVLNKADLVPKE----VLRKWLAYLRHSY----PT 60 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH---HHHhc---------CCCCEEEEEechhcCCHH----HHHHHHHHHHhhC----Cc
Confidence 7899999999987665432221 12221 356899999999998653 2567775554332 23
Q ss_pred eEEEEecccCcchhhHHHHHHhh-------------cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCce
Q 005977 372 GVYLVSARKDLGVRNLLAFIKEL-------------AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTT 438 (666)
Q Consensus 372 ~V~~VSAkkg~Gv~eLl~~I~~~-------------l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT 438 (666)
.++++||+++.|+++|++.|.+. .+...+++++|.||||||||||+|++..... ++..||||
T Consensus 61 ~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~-----~~~~~~~t 135 (155)
T cd01849 61 IPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLK-----VGNVPGTT 135 (155)
T ss_pred eEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccccc-----ccCCCCcc
Confidence 58999999999999999988542 2345689999999999999999999876444 36889999
Q ss_pred eEEEEEeeEeCCceEEEECCCC
Q 005977 439 LGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 439 ~~~~~~~~~l~~~~~liDTPGi 460 (666)
++...+. ++.++.|+||||+
T Consensus 136 ~~~~~~~--~~~~~~liDtPG~ 155 (155)
T cd01849 136 TSQQEVK--LDNKIKLLDTPGI 155 (155)
T ss_pred cceEEEE--ecCCEEEEECCCC
Confidence 9987765 5678999999997
No 12
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.9e-22 Score=220.04 Aligned_cols=217 Identities=25% Similarity=0.237 Sum_probs=146.2
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch-----H
Q 005977 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD-----F 274 (666)
Q Consensus 204 ~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d-----f 274 (666)
..++||+||||||+| |++.+.+.+++... ..+++.+.|+.+......+. .|+.. +
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~----------------~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADT----------------PGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC----------------CCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 457799999996555 99988874433221 22355555554443322222 25543 3
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+..++.. +...+|+|++|+|+.+... ..+..+..+|++ .++|+++|+||+|+..... .+
T Consensus 67 ~~~~~~~~~~--~~~~ad~il~vvd~~~~~~----~~~~~~~~~l~~---------~~~piilv~NK~D~~~~~~---~~ 128 (435)
T PRK00093 67 EKQIREQAEL--AIEEADVILFVVDGRAGLT----PADEEIAKILRK---------SNKPVILVVNKVDGPDEEA---DA 128 (435)
T ss_pred HHHHHHHHHH--HHHhCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCcEEEEEECccCccchh---hH
Confidence 4445554444 6678999999999987421 234455666664 3468999999999754221 12
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC---------CCccEEEEccCCCChhHHHHhhhccccce
Q 005977 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG---------PRGNVWVIGAQNAGKSTLINTFAKKEGVK 425 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~---------~~~~v~vvG~~NvGKSTLIN~L~~~~~~~ 425 (666)
..+ ..+| +.+++++||++|.|+++|++.|....+ ...+++++|.+|+|||||+|+|++.....
T Consensus 129 ~~~-----~~lg---~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~ 200 (435)
T PRK00093 129 YEF-----YSLG---LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI 200 (435)
T ss_pred HHH-----HhcC---CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 222 2345 445899999999999999999976321 23689999999999999999999875433
Q ss_pred eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcccc
Q 005977 426 VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 426 ~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~ 467 (666)
++..||||++.+....... ..+.++||||+.......
T Consensus 201 -----~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~ 238 (435)
T PRK00093 201 -----VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVT 238 (435)
T ss_pred -----ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchh
Confidence 3688999999876543333 368999999998766543
No 13
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.88 E-value=4.8e-22 Score=208.27 Aligned_cols=154 Identities=27% Similarity=0.305 Sum_probs=117.6
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 005977 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+++.+ .++.+|+|++|+|++++.++....+ .+.+ .++|+|+|+||+||+++.. +..|.+
T Consensus 13 ~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i----~~~l-----------~~kp~IiVlNK~DL~~~~~----~~~~~~ 71 (276)
T TIGR03596 13 REIKE--KLKLVDVVIEVLDARIPLSSRNPMI----DEIR-----------GNKPRLIVLNKADLADPAV----TKQWLK 71 (276)
T ss_pred HHHHH--HHhhCCEEEEEEeCCCCCCCCChhH----HHHH-----------CCCCEEEEEEccccCCHHH----HHHHHH
Confidence 34455 6788999999999999877655332 2222 2358999999999976432 567766
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC-------------CccEEEEccCCCChhHHHHhhhcccccee
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP-------------RGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~-------------~~~v~vvG~~NvGKSTLIN~L~~~~~~~~ 426 (666)
++. ..+. .++++||+++.|+++|++.|.++++. ..+++++|.||||||||||+|.+....
T Consensus 72 ~~~-~~~~----~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~-- 144 (276)
T TIGR03596 72 YFE-EKGI----KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVA-- 144 (276)
T ss_pred HHH-HcCC----eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCcc--
Confidence 553 3342 48999999999999999988876542 246999999999999999999976543
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCccc
Q 005977 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 427 ~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~ 466 (666)
.++..||||+....+. +..++.|+||||+..|...
T Consensus 145 ---~~~~~~g~T~~~~~~~--~~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 145 ---KVGNRPGVTKGQQWIK--LSDGLELLDTPGILWPKFE 179 (276)
T ss_pred ---ccCCCCCeecceEEEE--eCCCEEEEECCCcccCCCC
Confidence 3468999999987665 5668899999999988754
No 14
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=6.8e-22 Score=231.69 Aligned_cols=215 Identities=22% Similarity=0.170 Sum_probs=144.3
Q ss_pred ceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch-----
Q 005977 203 FTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d----- 273 (666)
...++||+||||| +|+|++.+.+.++++..+ ..++.+.++........+. .|++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p----------------GvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~ 339 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTP----------------GVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG 339 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCC----------------CeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc
Confidence 3457899999995 555999988754443322 2244455544433222222 25543
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+.+++.. ++..+|+||+|+|+++.. . ..+..+...|+. .++|+|+|+||+|+..... .
T Consensus 340 ~~~~~~~~~~~--~~~~aD~iL~VvDa~~~~--~--~~d~~i~~~Lr~---------~~~pvIlV~NK~D~~~~~~---~ 401 (712)
T PRK09518 340 IDSAIASQAQI--AVSLADAVVFVVDGQVGL--T--STDERIVRMLRR---------AGKPVVLAVNKIDDQASEY---D 401 (712)
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEECCCCC--C--HHHHHHHHHHHh---------cCCCEEEEEECcccccchh---h
Confidence 33445555554 678899999999998732 2 234456666654 4579999999999864321 1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC------------CccEEEEccCCCChhHHHHhhhcc
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP------------RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~------------~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
...+ ..++ +..++++||++|.|+++|++.|.+.++. ..+|+++|.+|||||||+|+|++.
T Consensus 402 ~~~~-----~~lg---~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 402 AAEF-----WKLG---LGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred HHHH-----HHcC---CCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 1111 2344 4458899999999999999998876542 147999999999999999999976
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 422 EGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 422 ~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
.... ++..||||++.+.....++ ..+.++||||+....
T Consensus 474 ~~~~-----v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~ 512 (712)
T PRK09518 474 ERAV-----VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ 512 (712)
T ss_pred cccc-----cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCc
Confidence 5332 3578999999765433233 367899999987543
No 15
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.87 E-value=1.7e-21 Score=200.83 Aligned_cols=192 Identities=19% Similarity=0.182 Sum_probs=139.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|.+++|+|+.++..++. .+++++. .+.. .+.|++||+||+||.+... ...+|++.+ .+.+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~-~~~~---------~~i~~vIV~NK~DL~~~~~---~~~~~~~~~-~~~g 97 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLN-QLDRFLV-VAEA---------QNIEPIIVLNKIDLLDDED---MEKEQLDIY-RNIG 97 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHH-HHHHHHH-HHHH---------CCCCEEEEEECcccCCCHH---HHHHHHHHH-HHCC
Confidence 4578999999999998775542 3444432 2222 3468899999999976432 123555444 3456
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~ 444 (666)
++ ++.+||++|.|+++|++.|.+ ..++++|.||||||||||+|++....+++.++.+...| ||++...+
T Consensus 98 ~~----v~~~SAktg~gi~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~ 168 (245)
T TIGR00157 98 YQ----VLMTSSKNQDGLKELIEALQN-----RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF 168 (245)
T ss_pred Ce----EEEEecCCchhHHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE
Confidence 43 899999999999999998874 47899999999999999999998777766555433434 89888776
Q ss_pred eeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec--ceEEEEecc
Q 005977 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG--GLMRLDLDQ 509 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg--GL~rlD~l~ 509 (666)
. + .+..|+|||||....+... ++++ +...++++....-.|++..|.|+. |.+....++
T Consensus 169 ~--l-~~~~liDtPG~~~~~l~~~--~~~~--~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~ 228 (245)
T TIGR00157 169 H--F-HGGLIADTPGFNEFGLWHL--EPEQ--LTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVE 228 (245)
T ss_pred E--c-CCcEEEeCCCccccCCCCC--CHHH--HHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHH
Confidence 6 4 4679999999999887643 3333 455677777777789999999987 555544443
No 16
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.86 E-value=3.4e-21 Score=203.00 Aligned_cols=153 Identities=28% Similarity=0.322 Sum_probs=116.6
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 005977 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+++.+ .++.+|+||+|+|++++.++.... +.+.+ ..+|+++|+||+||++.. .+..|++
T Consensus 16 ~~l~~--~l~~aDvIL~VvDar~p~~~~~~~----l~~~~-----------~~kp~iiVlNK~DL~~~~----~~~~~~~ 74 (287)
T PRK09563 16 REIKE--NLKLVDVVIEVLDARIPLSSENPM----IDKII-----------GNKPRLLILNKSDLADPE----VTKKWIE 74 (287)
T ss_pred HHHHH--HhhhCCEEEEEEECCCCCCCCChh----HHHHh-----------CCCCEEEEEEchhcCCHH----HHHHHHH
Confidence 34455 678899999999999987665432 22222 235899999999997542 2567866
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC-------------CCccEEEEccCCCChhHHHHhhhcccccee
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~-------------~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~ 426 (666)
++. ..+. .++++||+++.|++.|++.|.+.++ ...+++++|.||||||||||+|++....
T Consensus 75 ~~~-~~~~----~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~-- 147 (287)
T PRK09563 75 YFE-EQGI----KALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIA-- 147 (287)
T ss_pred HHH-HcCC----eEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCcc--
Confidence 553 3332 3899999999999999998876643 2347999999999999999999986543
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 427 ~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.+++.||+|++...+. ++.++.|+||||+..|..
T Consensus 148 ---~~~~~~g~T~~~~~~~--~~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 148 ---KTGNRPGVTKAQQWIK--LGKGLELLDTPGILWPKL 181 (287)
T ss_pred ---ccCCCCCeEEEEEEEE--eCCcEEEEECCCcCCCCC
Confidence 4478999999987655 567899999999998874
No 17
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.86 E-value=8.9e-22 Score=192.74 Aligned_cols=147 Identities=27% Similarity=0.409 Sum_probs=106.6
Q ss_pred CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCC--
Q 005977 292 GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPK-- 369 (666)
Q Consensus 292 DvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~-- 369 (666)
|+|++|+|++++.++....+.+.+. +.. .++|+|+|+||+||+++.. +..|++++.+....-.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~~---------~~kp~IlVlNK~DL~~~~~----l~~~~~~~~~~~~~~~~~ 65 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QAG---------GNKKLVLVLNKIDLVPKEN----VEKWLKYLRREFPTVAFK 65 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hcc---------CCCCEEEEEehhhcCCHHH----HHHHHHHHHhhCCEEEEE
Confidence 7899999999988776544333321 221 3468999999999987544 7889887765432100
Q ss_pred ------------------CCeEEEEecccCcchhhHHHHHHhhcCC-----CccEEEEccCCCChhHHHHhhhcccccee
Q 005977 370 ------------------LNGVYLVSARKDLGVRNLLAFIKELAGP-----RGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 370 ------------------~~~V~~VSAkkg~Gv~eLl~~I~~~l~~-----~~~v~vvG~~NvGKSTLIN~L~~~~~~~~ 426 (666)
.....++|+.++.|.+.|++.+.++... ..+++++|.||||||||||+|++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~- 144 (172)
T cd04178 66 ASTQSQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACN- 144 (172)
T ss_pred ecccccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccce-
Confidence 0112345666677788888888765432 2589999999999999999999876443
Q ss_pred ecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005977 427 SKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 427 ~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
+++.||||++...+. ++.++.++||||+
T Consensus 145 ----~~~~pg~T~~~~~~~--~~~~~~l~DtPGi 172 (172)
T cd04178 145 ----VGATPGVTKSMQEVH--LDKKVKLLDSPGI 172 (172)
T ss_pred ----ecCCCCeEcceEEEE--eCCCEEEEECcCC
Confidence 468999999987765 5668999999997
No 18
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.86 E-value=4e-21 Score=181.28 Aligned_cols=134 Identities=30% Similarity=0.377 Sum_probs=101.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+++++|+|++|+|++++....... +.+++.... .++|+++|+||+||+++.. +..|.+++. ..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~----l~~~l~~~~-------~~k~~iivlNK~DL~~~~~----~~~~~~~~~-~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPD----LERYVKEVD-------PRKKNILLLNKADLLTEEQ----RKAWAEYFK-KEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHH----HHHHHHhcc-------CCCcEEEEEechhcCCHHH----HHHHHHHHH-hcC
Confidence 678899999999999987655333 334443210 2468999999999976432 556655443 344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEee
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG 446 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~ 446 (666)
. .++++||+++.+ +++++|.+|||||||||+|++.... .++..||+|++...+.
T Consensus 72 ~----~ii~iSa~~~~~----------------~~~~~G~~~vGKstlin~l~~~~~~-----~~~~~~~~~~~~~~~~- 125 (141)
T cd01857 72 I----VVVFFSALKENA----------------TIGLVGYPNVGKSSLINALVGKKKV-----SVSATPGKTKHFQTIF- 125 (141)
T ss_pred C----eEEEEEecCCCc----------------EEEEECCCCCCHHHHHHHHhCCCce-----eeCCCCCcccceEEEE-
Confidence 2 489999998875 6999999999999999999976543 3578899999977665
Q ss_pred EeCCceEEEECCCCCCC
Q 005977 447 ILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 447 ~l~~~~~liDTPGi~~~ 463 (666)
++.+..|+||||+..|
T Consensus 126 -~~~~~~i~DtpG~~~p 141 (141)
T cd01857 126 -LTPTITLCDCPGLVFP 141 (141)
T ss_pred -eCCCEEEEECCCcCCC
Confidence 5668899999999865
No 19
>PRK12288 GTPase RsgA; Reviewed
Probab=99.86 E-value=6.3e-21 Score=205.72 Aligned_cols=195 Identities=20% Similarity=0.186 Sum_probs=142.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..+++|.+++|.++. +..+ +..+++++.. ... .+.|++||+||+||++... ...+..|+..+ +..|
T Consensus 117 iaANvD~vlIV~s~~-p~~s-~~~Ldr~L~~-a~~---------~~i~~VIVlNK~DL~~~~~-~~~~~~~~~~y-~~~g 182 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELS-LNIIDRYLVA-CET---------LGIEPLIVLNKIDLLDDEG-RAFVNEQLDIY-RNIG 182 (347)
T ss_pred EEEEccEEEEEEeCC-CCCC-HHHHHHHHHH-HHh---------cCCCEEEEEECccCCCcHH-HHHHHHHHHHH-HhCC
Confidence 357899988888764 4433 2345555432 221 3457899999999986542 12345565443 4556
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~ 444 (666)
+ .++.+||+++.|+++|++.|.. ..++|+|.||||||||||+|++.....++.++.+...| ||+....+
T Consensus 183 ~----~v~~vSA~tg~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~ 253 (347)
T PRK12288 183 Y----RVLMVSSHTGEGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLY 253 (347)
T ss_pred C----eEEEEeCCCCcCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEE
Confidence 4 3999999999999999999975 36899999999999999999998877777665555555 77776655
Q ss_pred eeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec--ceEEEEeccC
Q 005977 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg--GL~rlD~l~~ 510 (666)
. ++.+..|+|||||....+... +.++ +...+++|.+..-.|++..|.|.. |.+....++.
T Consensus 254 ~--l~~~~~liDTPGir~~~l~~~--~~~~--l~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~ 315 (347)
T PRK12288 254 H--FPHGGDLIDSPGVREFGLWHL--EPEQ--VTQGFVEFRDYLGTCKFRDCKHDDDPGCALREAVEE 315 (347)
T ss_pred E--ecCCCEEEECCCCCcccCCCC--CHHH--HHHhhHHHHHHhcCCCCCCCccCCCCCChHHHHHHc
Confidence 5 566778999999998887542 3333 455678888888899999999987 7776666554
No 20
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=201.23 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=131.9
Q ss_pred CceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccc-----
Q 005977 202 GFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDF----- 272 (666)
Q Consensus 202 G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~----- 272 (666)
||+++ ||||||| |||||++.|+|+||+++|+|+ ||.+..|++..+..|+++ |++
T Consensus 7 GfVaI-iGrPNvGKSTLlN~l~G~KisIvS~k~QT----------------TR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAI-IGRPNVGKSTLLNALVGQKISIVSPKPQT----------------TRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEE-EcCCCCcHHHHHHHHhcCceEeecCCcch----------------hhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 78877 9999999 556699999999999999999 999999999988888776 655
Q ss_pred hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH
Q 005977 273 DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 273 df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
.+.++|++.++. ++.++|+|++|||+.+..+. .++.+++.|+. .+.|+|+++||+|+++....
T Consensus 70 ~l~~~m~~~a~~--sl~dvDlilfvvd~~~~~~~----~d~~il~~lk~---------~~~pvil~iNKID~~~~~~~-- 132 (298)
T COG1159 70 ALGELMNKAARS--ALKDVDLILFVVDADEGWGP----GDEFILEQLKK---------TKTPVILVVNKIDKVKPKTV-- 132 (298)
T ss_pred HHHHHHHHHHHH--HhccCcEEEEEEeccccCCc----cHHHHHHHHhh---------cCCCeEEEEEccccCCcHHH--
Confidence 467799999998 99999999999999985543 35677777764 24589999999999976542
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCcc
Q 005977 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGN 400 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~ 400 (666)
+...++.+..... |.+|+++||++|.|++.|++.|.+++|++-.
T Consensus 133 -l~~~~~~~~~~~~---f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 133 -LLKLIAFLKKLLP---FKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred -HHHHHHHHHhhCC---cceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 3444444444444 7789999999999999999999999987643
No 21
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.85 E-value=4e-21 Score=204.27 Aligned_cols=158 Identities=26% Similarity=0.450 Sum_probs=127.0
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 005977 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+.+.+ .++.+||||.|+|||||.|+...+.++.+++. +.++++|||+||+||+|++. +..|+.
T Consensus 138 ke~rk--vve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----------~gnKkLILVLNK~DLVPrEv----~e~Wl~ 200 (435)
T KOG2484|consen 138 KEFRK--VVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----------HGNKKLILVLNKIDLVPREV----VEKWLV 200 (435)
T ss_pred HHHHH--HHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----------cCCceEEEEeehhccCCHHH----HHHHHH
Confidence 34455 67889999999999999999998888776541 14468999999999999876 899999
Q ss_pred HHHHhCCCCCCCeEEEEecccC-------------cchhhHHHHHHhhcCC-----CccEEEEccCCCChhHHHHhhhcc
Q 005977 360 HRAKAGGAPKLNGVYLVSARKD-------------LGVRNLLAFIKELAGP-----RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg-------------~Gv~eLl~~I~~~l~~-----~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
|+.+.+.. |.|.++... .|.+.|+..+.++... .+++.|||.|||||||+||+|..+
T Consensus 201 YLr~~~pt-----v~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 201 YLRREGPT-----VAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred HHHhhCCc-----ceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHh
Confidence 98876542 555444332 4667788888777543 468899999999999999999988
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCccc
Q 005977 422 EGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 422 ~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~ 466 (666)
..+.+ .+.||.|+.+..+. ++.++.|+|.||+..+...
T Consensus 276 k~C~v-----g~~pGvT~smqeV~--Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 276 KACNV-----GNVPGVTRSMQEVK--LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred ccccC-----CCCccchhhhhhee--ccCCceeccCCceeecCCC
Confidence 87765 48999999998877 7889999999999977654
No 22
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.85 E-value=2.4e-20 Score=181.50 Aligned_cols=144 Identities=31% Similarity=0.346 Sum_probs=108.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|++++...... .+...+ ..+|+++|+||+||+++. .+..|++++. ..+
T Consensus 16 ~i~~aD~il~v~D~~~~~~~~~~----~i~~~~-----------~~k~~ilVlNK~Dl~~~~----~~~~~~~~~~-~~~ 75 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNP----LLEKIL-----------GNKPRIIVLNKADLADPK----KTKKWLKYFE-SKG 75 (171)
T ss_pred HHhhCCEEEEEeeccCccCcCCh----hhHhHh-----------cCCCEEEEEehhhcCChH----HHHHHHHHHH-hcC
Confidence 67899999999999987654322 222322 235789999999997542 2455654432 222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc------------CCCccEEEEccCCCChhHHHHhhhccccceeecccccCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA------------GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPI 434 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l------------~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~ 434 (666)
..++++||+++.|+++|++.|.+.+ +...+++++|.+|||||||+|+|++.... .++..
T Consensus 76 ----~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-----~~~~~ 146 (171)
T cd01856 76 ----EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-----KVGNK 146 (171)
T ss_pred ----CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-----eecCC
Confidence 3489999999999999999998864 22347899999999999999999976543 34688
Q ss_pred CCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 435 PGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 435 PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
||||++...+. ++.++.++||||+.
T Consensus 147 ~~~T~~~~~~~--~~~~~~~iDtpG~~ 171 (171)
T cd01856 147 PGVTKGIQWIK--ISPGIYLLDTPGIL 171 (171)
T ss_pred CCEEeeeEEEE--ecCCEEEEECCCCC
Confidence 99999987765 44678999999984
No 23
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=194.51 Aligned_cols=190 Identities=26% Similarity=0.311 Sum_probs=143.7
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 005977 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH 360 (666)
Q Consensus 281 ~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~ 360 (666)
.+.||. ..+.|.+++|+.+.+|+.+. ..++++|.-. .. .+..| ++|+||+||++...... +.+ ..
T Consensus 71 ~L~Rp~-v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~a-e~--------~gi~p-vIvlnK~DL~~~~~~~~--~~~-~~ 135 (301)
T COG1162 71 VLIRPP-VANNDQAIIVVSLVDPDFNT-NLLDRYLVLA-EA--------GGIEP-VIVLNKIDLLDDEEAAV--KEL-LR 135 (301)
T ss_pred ceeCCc-ccccceEEEEEeccCCCCCH-HHHHHHHHHH-HH--------cCCcE-EEEEEccccCcchHHHH--HHH-HH
Confidence 445653 45688889999999987653 3456665432 11 13344 77899999998765221 222 23
Q ss_pred HHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ce
Q 005977 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TT 438 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT 438 (666)
.+..+|++ ++++|++++.|+++|...+.. ..+.++|+||||||||||+|.+....+++.++.....| ||
T Consensus 136 ~y~~~gy~----v~~~s~~~~~~~~~l~~~l~~-----~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTT 206 (301)
T COG1162 136 EYEDIGYP----VLFVSAKNGDGLEELAELLAG-----KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTT 206 (301)
T ss_pred HHHhCCee----EEEecCcCcccHHHHHHHhcC-----CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCcc
Confidence 45678876 999999999999999998874 47888999999999999999998888888888777777 88
Q ss_pred eEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec
Q 005977 439 LGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG 500 (666)
Q Consensus 439 ~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg 500 (666)
++..-+. ++.+..|+|||||....+.+ +.++++ ...+.++....-.|++..|.|.+
T Consensus 207 t~~~l~~--l~~gG~iiDTPGf~~~~l~~--~~~e~l--~~~F~ef~~~~~~CkFr~C~H~~ 262 (301)
T COG1162 207 THVELFP--LPGGGWIIDTPGFRSLGLAH--LEPEDL--VQAFPEFAELARQCKFRDCTHTH 262 (301)
T ss_pred ceEEEEE--cCCCCEEEeCCCCCccCccc--CCHHHH--HHHhHHHHHHhcCCCCCCCCCCC
Confidence 8877666 67899999999999998833 445543 45677887777799999999976
No 24
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.84 E-value=3.6e-20 Score=176.92 Aligned_cols=145 Identities=35% Similarity=0.481 Sum_probs=105.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|+|++|+|++++...... .+...+.. ..+|+++|+||+|+++... ...|. .+....+
T Consensus 9 i~~~aD~vl~V~D~~~~~~~~~~----~l~~~~~~---------~~~p~iiv~NK~Dl~~~~~----~~~~~-~~~~~~~ 70 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSR----KLERYVLE---------LGKKLLIVLNKADLVPKEV----LEKWK-SIKESEG 70 (156)
T ss_pred HHhhCCEEEEEeeCCCCcccCCH----HHHHHHHh---------CCCcEEEEEEhHHhCCHHH----HHHHH-HHHHhCC
Confidence 34569999999999987544332 23232322 3468999999999975322 34443 2223333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC---CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP---RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILR 443 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~---~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~ 443 (666)
. .++++||+++.|+++|++.|.++++. ..+++++|.+|||||||+|+|.+.... .+++.+|+|++...
T Consensus 71 ~----~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-----~~~~~~~~t~~~~~ 141 (156)
T cd01859 71 I----PVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSA-----STSPSPGYTKGEQL 141 (156)
T ss_pred C----cEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCcc-----ccCCCCCeeeeeEE
Confidence 2 38999999999999999999987654 457899999999999999999865422 34678999987654
Q ss_pred EeeEeCCceEEEECCCC
Q 005977 444 IGGILPAKAKLYDTPGL 460 (666)
Q Consensus 444 ~~~~l~~~~~liDTPGi 460 (666)
+. ++.++.++||||+
T Consensus 142 ~~--~~~~~~~~DtpGi 156 (156)
T cd01859 142 VK--ITSKIYLLDTPGV 156 (156)
T ss_pred EE--cCCCEEEEECcCC
Confidence 43 4567899999997
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.82 E-value=1.3e-19 Score=191.00 Aligned_cols=193 Identities=26% Similarity=0.236 Sum_probs=136.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|++++|+|+.++..+ +..+++++. .+.. .+.|+++|+||+||.+... ...|... +...+
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~-~~~~---------~~ip~iIVlNK~DL~~~~~----~~~~~~~-~~~~g 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLV-AAEA---------AGIEPVIVLTKADLLDDEE----EELELVE-ALALG 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHH-HHHH---------cCCCEEEEEEHHHCCChHH----HHHHHHH-HHhCC
Confidence 46889999999999886522 234455443 2222 3468899999999986522 2334332 23455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccc--cCCCCceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTE--APIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~--S~~PGTT~~~~~~ 444 (666)
+ .++++||+++.|+++|...|.. ..++++|.+|||||||||+|++.....++.++. +..++||++...+
T Consensus 139 ~----~v~~vSA~~g~gi~~L~~~L~~-----k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~ 209 (287)
T cd01854 139 Y----PVLAVSAKTGEGLDELREYLKG-----KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF 209 (287)
T ss_pred C----eEEEEECCCCccHHHHHhhhcc-----ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE
Confidence 4 3899999999999999998874 479999999999999999999876655554433 2344588887666
Q ss_pred eeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec--ceEEEEeccC
Q 005977 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG--GLMRLDLDQA 510 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg--GL~rlD~l~~ 510 (666)
. ++....|+||||+....+.. ++.++ +...++++....-.|++.+|.|.. |.+..+.++.
T Consensus 210 ~--~~~~~~liDtPG~~~~~~~~--~~~~~--~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~ 271 (287)
T cd01854 210 P--LPGGGLLIDTPGFREFGLLH--IDPEE--LAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEA 271 (287)
T ss_pred E--cCCCCEEEECCCCCccCCcc--CCHHH--HHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHc
Confidence 5 55567999999998876432 33333 455677777777889999999986 6655555443
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=99.82 E-value=2.2e-19 Score=190.22 Aligned_cols=193 Identities=25% Similarity=0.249 Sum_probs=133.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+.++|++++|+|+.++... ...+++.+.. +.. .+.|+++|+||+||.... .....|.+.+ +..+
T Consensus 77 iaaniD~vllV~d~~~p~~~-~~~idr~L~~-~~~---------~~ip~iIVlNK~DL~~~~---~~~~~~~~~~-~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFS-TDLLDRFLVL-AEA---------NGIKPIIVLNKIDLLDDL---EEARELLALY-RAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCC-HHHHHHHHHH-HHH---------CCCCEEEEEEhHHcCCCH---HHHHHHHHHH-HHCC
Confidence 35789999999999876432 2223333322 222 346899999999997332 2344554433 4556
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~ 444 (666)
+ .++++||+++.|+++|++.|. +..++++|.+|||||||||+|++.....++.++....-| ||++...+
T Consensus 142 ~----~v~~vSA~~g~gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~ 212 (298)
T PRK00098 142 Y----DVLELSAKEGEGLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY 212 (298)
T ss_pred C----eEEEEeCCCCccHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE
Confidence 4 389999999999999999885 347889999999999999999987766555444433344 78776555
Q ss_pred eeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec--ceEEEEecc
Q 005977 445 GGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG--GLMRLDLDQ 509 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg--GL~rlD~l~ 509 (666)
. ++.+..|+||||+....+.. ++.++ +...++++.+..-.|++..|.|.+ |.+....++
T Consensus 213 ~--~~~~~~~~DtpG~~~~~~~~--~~~~~--~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~ 273 (298)
T PRK00098 213 D--LPGGGLLIDTPGFSSFGLHD--LEAEE--LEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVE 273 (298)
T ss_pred E--cCCCcEEEECCCcCccCCCC--CCHHH--HHHHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHH
Confidence 4 55678999999999776543 23333 334566666666778999999987 554444443
No 27
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=197.89 Aligned_cols=169 Identities=25% Similarity=0.261 Sum_probs=124.0
Q ss_pred CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
..|.-.--+++|+|+ +++.+|+||.|||||+|.-.++.++++++.+.. ..+..+|++||+||+++..
T Consensus 156 TpFErNLE~WRQLWR--VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----------~~K~~~LLvNKaDLl~~~q 222 (562)
T KOG1424|consen 156 TPFERNLEIWRQLWR--VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----------PSKANVLLVNKADLLPPEQ 222 (562)
T ss_pred chhhhCHHHHHHHHH--HHhhcceEEEEeecCCccccCChhHHHHHhccc-----------cccceEEEEehhhcCCHHH
Confidence 334444467899999 999999999999999998888877766654432 2245799999999998865
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCeEEEEecccC----------------cchhh------------HHHHHH---------
Q 005977 350 SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKD----------------LGVRN------------LLAFIK--------- 392 (666)
Q Consensus 350 ~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg----------------~Gv~e------------Ll~~I~--------- 392 (666)
...|..|+..+ +++ ++|-||.-. .++.. ++....
T Consensus 223 ----r~aWa~YF~~~-ni~----~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v 293 (562)
T KOG1424|consen 223 ----RVAWAEYFRQN-NIP----VVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDV 293 (562)
T ss_pred ----HHHHHHHHHhc-Cce----EEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhH
Confidence 68898776543 333 778887650 11111 111000
Q ss_pred -h---------h-----cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEEC
Q 005977 393 -E---------L-----AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDT 457 (666)
Q Consensus 393 -~---------~-----l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDT 457 (666)
+ . .+...+|.+||+|||||||+||+|.+...+ ++|..||-|++++.+. +...+.|.|+
T Consensus 294 ~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkV-----sVS~TPGkTKHFQTi~--ls~~v~LCDC 366 (562)
T KOG1424|consen 294 EQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKV-----SVSSTPGKTKHFQTIF--LSPSVCLCDC 366 (562)
T ss_pred HhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCcee-----eeecCCCCcceeEEEE--cCCCceecCC
Confidence 0 0 011257899999999999999999987644 5689999999999887 7789999999
Q ss_pred CCCCCCcccc
Q 005977 458 PGLLHPHLMS 467 (666)
Q Consensus 458 PGi~~~~~~~ 467 (666)
||++.|+...
T Consensus 367 PGLVfPSf~~ 376 (562)
T KOG1424|consen 367 PGLVFPSFSP 376 (562)
T ss_pred CCccccCCCc
Confidence 9999999854
No 28
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.78 E-value=4.9e-19 Score=187.26 Aligned_cols=162 Identities=35% Similarity=0.455 Sum_probs=126.7
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.|+..+.+ ++..+|+||.|+|||||.|+....++++| +.. +..+.+|+|+||+||+|.+. ..
T Consensus 201 kRIW~ELyK--ViDSSDVvvqVlDARDPmGTrc~~ve~yl----kke-------~phKHli~vLNKvDLVPtwv----t~ 263 (572)
T KOG2423|consen 201 KRIWGELYK--VIDSSDVVVQVLDARDPMGTRCKHVEEYL----KKE-------KPHKHLIYVLNKVDLVPTWV----TA 263 (572)
T ss_pred hHHHHHHHH--hhcccceeEEeeeccCCcccccHHHHHHH----hhc-------CCcceeEEEeeccccccHHH----HH
Confidence 456666777 88899999999999999999986655443 331 13457999999999999987 68
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC-----CCccEEEEccCCCChhHHHHhhhccccceeeccc
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-----PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT 430 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~-----~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt 430 (666)
.|++.+.+... .+ -|-.|-.+..|-..|++.|+++.. ..+.|.+||+|||||||+||+|..+..+++
T Consensus 264 ~Wv~~lSkeyP--Ti--AfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv---- 335 (572)
T KOG2423|consen 264 KWVRHLSKEYP--TI--AFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV---- 335 (572)
T ss_pred HHHHHHhhhCc--ce--eeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccc----
Confidence 89998887654 22 345566777888888888887643 236789999999999999999999988876
Q ss_pred ccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 431 EAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 431 ~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.++||-|.-..-+. +-.++.|||+||++.|..
T Consensus 336 -APIpGETKVWQYIt--LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 336 -APIPGETKVWQYIT--LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred -cCCCCcchHHHHHH--HHhceeEecCCCccCCCC
Confidence 48999887554333 446889999999998875
No 29
>PRK01889 GTPase RsgA; Reviewed
Probab=99.68 E-value=3.7e-16 Score=169.54 Aligned_cols=181 Identities=27% Similarity=0.238 Sum_probs=120.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
.+++|.|++|+++. ++.. +..+++.+.. +.. .+.+.+||+||+||++... ....|+..+ ..++
T Consensus 110 aANvD~vliV~s~~-p~~~-~~~ldr~L~~-a~~---------~~i~piIVLNK~DL~~~~~---~~~~~~~~~--~~g~ 172 (356)
T PRK01889 110 AANVDTVFIVCSLN-HDFN-LRRIERYLAL-AWE---------SGAEPVIVLTKADLCEDAE---EKIAEVEAL--APGV 172 (356)
T ss_pred EEeCCEEEEEEecC-CCCC-hhHHHHHHHH-HHH---------cCCCEEEEEEChhcCCCHH---HHHHHHHHh--CCCC
Confidence 58999999999995 3322 3345555433 222 2345688999999986521 122333332 3344
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEEe
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIG 445 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~~ 445 (666)
.|+++||+++.|+++|...|.. +..++++|.+|+|||||+|+|++.....++.+......| ||+...-.
T Consensus 173 ----~Vi~vSa~~g~gl~~L~~~L~~----g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~- 243 (356)
T PRK01889 173 ----PVLAVSALDGEGLDVLAAWLSG----GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH- 243 (356)
T ss_pred ----cEEEEECCCCccHHHHHHHhhc----CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE-
Confidence 3999999999999999998863 457999999999999999999987665555554333334 45432222
Q ss_pred eEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec
Q 005977 446 GILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG 500 (666)
Q Consensus 446 ~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg 500 (666)
.++.+..++||||+..+.+... +..+...+.++....-.|++..|.|..
T Consensus 244 -~l~~~~~l~DtpG~~~~~l~~~-----~~~l~~~f~~~~~~~~~c~f~~c~h~~ 292 (356)
T PRK01889 244 -PLPSGGLLIDTPGMRELQLWDA-----EDGVEETFSDIEELAAQCRFRDCAHEA 292 (356)
T ss_pred -EecCCCeecCCCchhhhcccCc-----hhhHHHhHHHHHHHHccCCCCCCCCCC
Confidence 2456678999999987776432 122233455566666678888888876
No 30
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.67 E-value=3.3e-16 Score=162.93 Aligned_cols=158 Identities=24% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|+||.|-|||-|..+... +++ ++. ..+|-|+|+||+||.+....+..++.+ .++ .
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~-----~~~---~~~-------~~k~riiVlNK~DLad~~~~k~~iq~~----~~~-~ 102 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNE-----LFQ---DFL-------PPKPRIIVLNKMDLADPKEQKKIIQYL----EWQ-N 102 (335)
T ss_pred hcccccEEEEeeccccCCccccH-----HHH---Hhc-------CCCceEEEEecccccCchhhhHHHHHH----Hhh-c
Confidence 45679999999999998877653 222 211 235679999999999865543333332 222 1
Q ss_pred CCCCCeEEEEecccCcc--hhhHHHHHHhh----------cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCC
Q 005977 367 APKLNGVYLVSARKDLG--VRNLLAFIKEL----------AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPI 434 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~G--v~eLl~~I~~~----------l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~ 434 (666)
...++..+..+..+ +..++..+... .+..-++||||.||||||||||++......+...+++.+.
T Consensus 103 ---~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~ 179 (335)
T KOG2485|consen 103 ---LESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAE 179 (335)
T ss_pred ---ccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCC
Confidence 22244455444433 55544433221 2234689999999999999999998776666667788999
Q ss_pred CCceeEEEE-EeeEeCCceEEEECCCCCCCcccc
Q 005977 435 PGTTLGILR-IGGILPAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 435 PGTT~~~~~-~~~~l~~~~~liDTPGi~~~~~~~ 467 (666)
||.|+.+.. +.......++++||||+..|++..
T Consensus 180 pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 180 PGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 999998754 443344578999999999997654
No 31
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.61 E-value=2e-15 Score=157.60 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=106.2
Q ss_pred CceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch----
Q 005977 202 GFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d---- 273 (666)
||++. ||+||+|| ||+|++.+++.++++.++++ |+....|.......++. .|++.
T Consensus 1 g~V~l-iG~pnvGKSTLln~L~~~~~~~vs~~~~T----------------Tr~~i~~i~~~~~~qii~vDTPG~~~~~~ 63 (270)
T TIGR00436 1 GFVAI-LGRPNVGKSTLLNQLHGQKISITSPKAQT----------------TRNRISGIHTTGASQIIFIDTPGFHEKKH 63 (270)
T ss_pred CEEEE-ECCCCCCHHHHHHHHhCCcEeecCCCCCc----------------ccCcEEEEEEcCCcEEEEEECcCCCCCcc
Confidence 55665 99999995 55599999999888887766 44333343332222322 26653
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH
Q 005977 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+.+.|.+.++. ++.++|+|++|+|+.+.... .+.++..+.. .+.|+++|+||+|++.+..
T Consensus 64 ~l~~~~~~~~~~--~l~~aDvvl~VvD~~~~~~~-----~~~i~~~l~~---------~~~p~ilV~NK~Dl~~~~~--- 124 (270)
T TIGR00436 64 SLNRLMMKEARS--AIGGVDLILFVVDSDQWNGD-----GEFVLTKLQN---------LKRPVVLTRNKLDNKFKDK--- 124 (270)
T ss_pred hHHHHHHHHHHH--HHhhCCEEEEEEECCCCCch-----HHHHHHHHHh---------cCCCEEEEEECeeCCCHHH---
Confidence 34455555555 67899999999999874321 1344454443 3468999999999975432
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
+..+...+....+ +..++++||++|.|+++|++.|.+.++++
T Consensus 125 -~~~~~~~~~~~~~---~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 125 -LLPLIDKYAILED---FKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred -HHHHHHHHHhhcC---CCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 3333333333333 44699999999999999999999988765
No 32
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.60 E-value=5.7e-16 Score=149.84 Aligned_cols=124 Identities=25% Similarity=0.374 Sum_probs=87.7
Q ss_pred HHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--cee
Q 005977 362 AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTL 439 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~ 439 (666)
++++|++ |+++|++++.|+++|.+.++. ..++++|.+|||||||||+|++....+++.++.....| ||+
T Consensus 8 y~~~gy~----v~~~S~~~~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt 78 (161)
T PF03193_consen 8 YEKLGYP----VFFISAKTGEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT 78 (161)
T ss_dssp HHHTTSE----EEE-BTTTTTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------
T ss_pred HHHcCCc----EEEEeCCCCcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC
Confidence 4678875 999999999999999999875 48899999999999999999998777777777666677 777
Q ss_pred EEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhccceeeEecCCCeeeec
Q 005977 440 GILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVKGGQAVHVG 500 (666)
Q Consensus 440 ~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk~gqsl~lg 500 (666)
...-+. ++.+..|||||||....+.. ++++ .+...++++.+..-.|++..|.|+.
T Consensus 79 ~~~l~~--l~~g~~iIDTPGf~~~~l~~--~~~~--~l~~~F~e~~~~~~~CkF~~C~H~~ 133 (161)
T PF03193_consen 79 HRELFP--LPDGGYIIDTPGFRSFGLWH--IDPE--ELAQYFPEFRPLAGQCKFRDCTHIH 133 (161)
T ss_dssp SEEEEE--ETTSEEEECSHHHHT--GCC--S-HH--HHHHCSGGGHHHTTHSSSTTTTSSS
T ss_pred CeeEEe--cCCCcEEEECCCCCcccccc--CCHH--HHHHHHHHhccccCCCCccCCCCCC
Confidence 665554 67899999999999888764 2333 4456788898888899999999976
No 33
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.50 E-value=4.4e-14 Score=146.54 Aligned_cols=166 Identities=20% Similarity=0.237 Sum_probs=115.1
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch----
Q 005977 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d---- 273 (666)
+|++. +|.||||++|| |.+++.|++.+++|..+ ||.+..|.+.....|..+ |+.-
T Consensus 73 L~vav-IG~PNvGKStLtN~mig~kv~~vS~K~~T----------------Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVAV-IGAPNVGKSTLTNQMIGQKVSAVSRKVHT----------------TRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEE-EcCCCcchhhhhhHhhCCccccccccccc----------------eeeeeeEEEecCceEEEEecCCcccccch
Confidence 55555 99999997777 99999999999999998 777888888777666554 5432
Q ss_pred -HHH-HHHH---HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 274 -FDR-VIAT---RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 274 -f~~-~L~~---~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
... .+.+ ..+. ++..+|+|+.|+|+.+.......+ ++..|+.+ .+.|-|||+||+|++++.
T Consensus 136 ~r~~~l~~s~lq~~~~--a~q~AD~vvVv~Das~tr~~l~p~----vl~~l~~y--------s~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 136 HRRHHLMMSVLQNPRD--AAQNADCVVVVVDASATRTPLHPR----VLHMLEEY--------SKIPSILVMNKIDKLKQK 201 (379)
T ss_pred hhhHHHHHHhhhCHHH--HHhhCCEEEEEEeccCCcCccChH----HHHHHHHH--------hcCCceeeccchhcchhh
Confidence 111 1222 3344 778999999999999743333333 34445543 345789999999998654
Q ss_pred CCh-------------HHHHHHHHHHH---------HhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 349 VSP-------------TRLDRWVRHRA---------KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 349 ~~~-------------~~L~~wl~~~~---------k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
... ....+|.+... ...|.++|..||+|||++|.|+++|.++|...++++
T Consensus 202 ~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 202 RLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 310 11122322211 012456789999999999999999999999887765
No 34
>PRK00089 era GTPase Era; Reviewed
Probab=99.49 E-value=8e-14 Score=146.72 Aligned_cols=159 Identities=22% Similarity=0.289 Sum_probs=105.8
Q ss_pred CceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch----
Q 005977 202 GFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d---- 273 (666)
||++. ||+||+|| |++|++.+.++++.+.++++ ++.+..+.......++. .|+..
T Consensus 6 g~V~i-iG~pn~GKSTLin~L~g~~~~~vs~~~~t----------------t~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAI-VGRPNVGKSTLLNALVGQKISIVSPKPQT----------------TRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEE-ECCCCCCHHHHHHHHhCCceeecCCCCCc----------------ccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 66655 99999995 55599999998877776655 33333343332222332 26542
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH
Q 005977 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+.+.|...+.. +..++|++++|+|+.+... ..+..+++.+.. ...|+++|+||+|++... .
T Consensus 69 ~l~~~~~~~~~~--~~~~~D~il~vvd~~~~~~----~~~~~i~~~l~~---------~~~pvilVlNKiDl~~~~---~ 130 (292)
T PRK00089 69 ALNRAMNKAAWS--SLKDVDLVLFVVDADEKIG----PGDEFILEKLKK---------VKTPVILVLNKIDLVKDK---E 130 (292)
T ss_pred HHHHHHHHHHHH--HHhcCCEEEEEEeCCCCCC----hhHHHHHHHHhh---------cCCCEEEEEECCcCCCCH---H
Confidence 33445555555 6788999999999988322 223445554442 346899999999998431 1
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.+...+..+.+..+ +..++++||+++.|+++|++.|.+.++++
T Consensus 131 ~l~~~~~~l~~~~~---~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 131 ELLPLLEELSELMD---FAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhhCC---CCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 24444444444333 56799999999999999999999887654
No 35
>PRK15494 era GTPase Era; Provisional
Probab=99.46 E-value=2.7e-13 Score=146.45 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=102.3
Q ss_pred eeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch-----H
Q 005977 204 TPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD-----F 274 (666)
Q Consensus 204 ~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d-----f 274 (666)
-.++||+||+|| ||+|++.+.+.++++.+.++ |+....+.+.....++.+ |+.+ +
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~t----------------Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l 117 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQT----------------TRSIITGIITLKDTQVILYDTPGIFEPKGSL 117 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCC----------------ccCcEEEEEEeCCeEEEEEECCCcCCCcccH
Confidence 345699999995 55599999998877776655 333333433333333332 6652 3
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...|.+.++. ++.++|+|++|+|+.+... ..+..+++.++. ...|+|+|+||+|+..+ . ...+
T Consensus 118 ~~~~~r~~~~--~l~~aDvil~VvD~~~s~~----~~~~~il~~l~~---------~~~p~IlViNKiDl~~~-~-~~~~ 180 (339)
T PRK15494 118 EKAMVRCAWS--SLHSADLVLLIIDSLKSFD----DITHNILDKLRS---------LNIVPIFLLNKIDIESK-Y-LNDI 180 (339)
T ss_pred HHHHHHHHHH--HhhhCCEEEEEEECCCCCC----HHHHHHHHHHHh---------cCCCEEEEEEhhcCccc-c-HHHH
Confidence 4456666655 6789999999999876322 233445555543 23467899999998643 1 1223
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCc
Q 005977 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRG 399 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~ 399 (666)
..++ .... .+..++++||++|.|+++|++.|.++++++-
T Consensus 181 ~~~l----~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 181 KAFL----TENH--PDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HHHH----HhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 3332 2222 1456999999999999999999999888653
No 36
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=2.5e-13 Score=149.17 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=106.7
Q ss_pred eeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc-cc---cCcchHH----
Q 005977 205 PAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NL---IPDFDFD---- 275 (666)
Q Consensus 205 ~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q-~~---iP~~df~---- 275 (666)
.++||+||+| |||||.|.+.|. +++.++++ |+..++|.+.....+ +. +|++...
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~-~vs~~p~T----------------T~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~ 224 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKP-KVADYPFT----------------TLVPNLGVVRVDDERSFVVADIPGLIEGASEG 224 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcc-cccCCCCC----------------ccCcEEEEEEeCCCcEEEEEeCCCccccccch
Confidence 4679999999 555699999885 56666766 777777777543322 33 3766421
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
..|...+.+ .++++|++++|+|+..++...+......+++.|..+.. .+ ..+|+|+|+||+|++.+.. +.
T Consensus 225 ~~Lg~~~l~--~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~--~L--~~kP~IlVlNKiDl~~~~e----l~ 294 (390)
T PRK12298 225 AGLGIRFLK--HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP--KL--AEKPRWLVFNKIDLLDEEE----AE 294 (390)
T ss_pred hhHHHHHHH--HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh--hh--cCCCEEEEEeCCccCChHH----HH
Confidence 123444444 67789999999999854333343434455555544210 00 2368999999999976543 33
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
..++.+.+..+. ...|+++||+++.|+++|++.|.+++++
T Consensus 295 ~~l~~l~~~~~~--~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 295 ERAKAIVEALGW--EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHhCC--CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 344444333331 1248999999999999999999887654
No 37
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.39 E-value=5.7e-13 Score=146.75 Aligned_cols=180 Identities=28% Similarity=0.467 Sum_probs=124.4
Q ss_pred ceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005977 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~ 324 (666)
..+|+||+-+.|++....+ ...|+ .+.+.+... .++-.++..|+|..|.+++... .+....
T Consensus 75 ~~~cpgc~~l~~~~~~~~~---~v~~~-~y~k~~~~~------~~~~~~~~~vvd~~d~p~~i~p--------~~~~~v- 135 (572)
T KOG1249|consen 75 AIVCPGCGFLEHMRAALAV---PVVPG-EYKKEKSEK------QENPALARKVVDLSDEPCSIDP--------LLTNDV- 135 (572)
T ss_pred cccCCcchHHHHhhhhccC---ccChh-hhhhhhhhh------hhcccceEEeeecccCcccccc--------chhhcc-
Confidence 4589999999988776432 22333 233333322 2234678999999998765432 222211
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH----hC----CCC--CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK----AG----GAP--KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k----~~----g~~--~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..+.+++++||+|++|+....-.+......+.. .. .+| .|.++..+|+++++|+++|+-.|...
T Consensus 136 ------~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 136 ------GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred ------cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 123479999999999987643333322111110 10 111 26678899999999999999999988
Q ss_pred cCCCccEEEEccCCCChhHHHHhhhccccce------eecccccCCCCceeEEEEEeeEeC
Q 005977 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVK------VSKLTEAPIPGTTLGILRIGGILP 449 (666)
Q Consensus 395 l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~------~~~lt~S~~PGTT~~~~~~~~~l~ 449 (666)
+.-++.++.+|++||||||++|+|+.....+ +.++|++.+||||+...+++...+
T Consensus 210 ~df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p 270 (572)
T KOG1249|consen 210 VDFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVP 270 (572)
T ss_pred eeccCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccc
Confidence 8888999999999999999999999876542 456799999999999888775433
No 38
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.38 E-value=1.4e-12 Score=142.61 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=108.7
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc----------
Q 005977 201 DGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---------- 269 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---------- 269 (666)
+..-.|+||||||| ||++|++.++-.++++..+.+ ||+-.+..+......+.+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT----------------TRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT----------------TRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc----------------cccceeeeEEECCeEEEEEECCCCCccc
Confidence 45666779999999 666699999988777765544 333222222211111111
Q ss_pred ---CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC
Q 005977 270 ---PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 270 ---P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
...++-..+ ...+ ++..+++|++|+|+..+.... +..+.....+ .++++++|+||.|++.
T Consensus 241 ki~e~~E~~Sv~--rt~~--aI~~a~vvllviDa~~~~~~q----D~~ia~~i~~---------~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 241 KITESVEKYSVA--RTLK--AIERADVVLLVIDATEGISEQ----DLRIAGLIEE---------AGRGIVIVVNKWDLVE 303 (444)
T ss_pred ccccceEEEeeh--hhHh--HHhhcCEEEEEEECCCCchHH----HHHHHHHHHH---------cCCCeEEEEEccccCC
Confidence 111111111 1223 678899999999999864322 3334443333 4568999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 347 SQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+.. ..+..+...+.+.+..-.+..++++||++|.|+..|++.+.+....-.+ -+ .++++|..+..
T Consensus 304 ~~~--~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~-------ri-~Ts~LN~~l~~ 368 (444)
T COG1160 304 EDE--ATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATR-------RI-STSLLNRVLED 368 (444)
T ss_pred chh--hHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc-------cc-CHHHHHHHHHH
Confidence 632 2244554444444444347789999999999999999998765321101 11 27778888754
No 39
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.5e-12 Score=141.67 Aligned_cols=251 Identities=19% Similarity=0.231 Sum_probs=152.4
Q ss_pred CCCCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecce------ecceecce--ec-cccccc
Q 005977 198 LDLDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARC------HSLRNYGQ--VK-NEVAEN 267 (666)
Q Consensus 198 ~dl~G~~~a~vGrpNvg~t-lLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC------~rLr~ygk--v~-~~~~q~ 267 (666)
.+|...+.-++|-=-.|+| ||-.+.+.-+.-.+- -+.++....+|..-| .-++.+++ +. +...-+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegea-----ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvI 545 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEA-----GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVI 545 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccc-----cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEe
Confidence 3577777777788888865 445555543210000 000112233444444 22233333 11 111222
Q ss_pred ccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 268 LIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 268 ~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
..|++.....+.++ .+..||++|+|||+++ |..|+.+... +.|+. .+.|+|+++||||.|-.
T Consensus 546 dtpghEsFtnlRsr-----gsslC~~aIlvvdImh--GlepqtiESi--~lLR~---------rktpFivALNKiDRLYg 607 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSR-----GSSLCDLAILVVDIMH--GLEPQTIESI--NLLRM---------RKTPFIVALNKIDRLYG 607 (1064)
T ss_pred cCCCchhhhhhhhc-----cccccceEEEEeehhc--cCCcchhHHH--HHHHh---------cCCCeEEeehhhhhhcc
Confidence 34777654444443 6778999999999999 6666654432 45554 45799999999999854
Q ss_pred CCC--------------h-------HHHHHHHHHHHHh----------CCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 348 QVS--------------P-------TRLDRWVRHRAKA----------GGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 348 ~~~--------------~-------~~L~~wl~~~~k~----------~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+.. . .++...+.++.++ .....+..++++||.+|.|+.+|+-+|.++..
T Consensus 608 wk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 608 WKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 432 0 1122222222111 11112456899999999999999999987643
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhh
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDE 474 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e 474 (666)
.++...|..........+.+...+| ||.|++.+.+.+..+-.|+ .+|+..|...+.+ .
T Consensus 688 ---------------k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~Iv-vcG~~GpIvTtIR----a 747 (1064)
T KOG1144|consen 688 ---------------KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIV-VCGLQGPIVTTIR----A 747 (1064)
T ss_pred ---------------HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEE-EcCCCCchhHHHH----H
Confidence 3445556544444444455556665 9999999999888777777 7999999887654 5
Q ss_pred HHHHHhhhhccceeeEe
Q 005977 475 QKMVEIRKELQPRTYRV 491 (666)
Q Consensus 475 ~~~~~~~kel~p~t~~l 491 (666)
+.++.|.++++...-++
T Consensus 748 LLtP~PlkElRVk~~Y~ 764 (1064)
T KOG1144|consen 748 LLTPQPLKELRVKGTYV 764 (1064)
T ss_pred hcCCcchHhhcccccee
Confidence 66777889998875544
No 40
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.31 E-value=3e-12 Score=123.61 Aligned_cols=144 Identities=21% Similarity=0.182 Sum_probs=84.2
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcc------hH
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF------DF 274 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~------df 274 (666)
.|.||+||+|||+| |+|.+.+.. +...+ +-|..+..|.+.....++. +|+. ..
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~-v~n~p----------------G~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQK-VGNWP----------------GTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEE-EEEST----------------TSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEECCCCCCHHHHHHHHHCCCce-ecCCC----------------CCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 46799999995555 999999932 22222 2233333333332222222 3542 22
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+.+... .....|+|++|+|++... + .-++...|.. ...|+++|+||+|++.+....-.
T Consensus 66 ee~v~~~~l---~~~~~D~ii~VvDa~~l~-----r-~l~l~~ql~e---------~g~P~vvvlN~~D~a~~~g~~id- 126 (156)
T PF02421_consen 66 EERVARDYL---LSEKPDLIIVVVDATNLE-----R-NLYLTLQLLE---------LGIPVVVVLNKMDEAERKGIEID- 126 (156)
T ss_dssp HHHHHHHHH---HHTSSSEEEEEEEGGGHH-----H-HHHHHHHHHH---------TTSSEEEEEETHHHHHHTTEEE--
T ss_pred HHHHHHHHH---hhcCCCEEEEECCCCCHH-----H-HHHHHHHHHH---------cCCCEEEEEeCHHHHHHcCCEEC-
Confidence 333433222 135799999999998731 1 1233333443 34699999999999876542111
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHH
Q 005977 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFI 391 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I 391 (666)
...+.+.+|.| |+++||+++.|+++|++.|
T Consensus 127 ---~~~Ls~~Lg~p----vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 ---AEKLSERLGVP----VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ---HHHHHHHHTS-----EEEEBTTTTBTHHHHHHHH
T ss_pred ---HHHHHHHhCCC----EEEEEeCCCcCHHHHHhhC
Confidence 22233455765 9999999999999999876
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=1.1e-11 Score=139.35 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=95.2
Q ss_pred eeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcc----hHHH
Q 005977 205 PAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF----DFDR 276 (666)
Q Consensus 205 ~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~----df~~ 276 (666)
.++||+||+| |||||+|.+.|..+ ...+++ |+.-++|.+.....++. +|++ +..+
T Consensus 162 V~LVG~PNAGKSTLln~Ls~akpkI-adypfT----------------Tl~P~lGvv~~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAKPKI-ADYPFT----------------TLVPNLGVVQAGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCCccc-cccCcc----------------cccceEEEEEECCeEEEEEECCCCccccchhh
Confidence 3569999999 55559998877543 333443 33334444433222222 3654 2222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCC-CCCcHHHHHHHHHHHHHhhhhh-----hhhcCCCcEEEEEeCCCCCCCCCC
Q 005977 277 VIATRLMKPSGNANAGVVVMVVDCVDFD-GMFPKRAAKSLFKKLEEAKDDA-----KLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 277 ~L~~~l~rP~a~~~aDvVL~VVDa~Df~-gs~p~~id~~L~~~L~~~~~~~-----~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
-|...+.+ .++.+|+||+|||+.+.. +..|......+...|..+.... ......+|+|+|+||+|+.....
T Consensus 225 gLg~~fLr--hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e- 301 (500)
T PRK12296 225 GLGLDFLR--HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE- 301 (500)
T ss_pred HHHHHHHH--HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-
Confidence 34444445 567899999999998643 2223222233333343321000 00002468999999999964332
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+..+++......+. .|++|||+++.|+++|+..|.+.+
T Consensus 302 ---l~e~l~~~l~~~g~----~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 302 ---LAEFVRPELEARGW----PVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ---HHHHHHHHHHHcCC----eEEEEECCCCCCHHHHHHHHHHHH
Confidence 33344333344454 399999999999999999988764
No 42
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=121.69 Aligned_cols=159 Identities=25% Similarity=0.268 Sum_probs=105.0
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhh-hhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHH--
Q 005977 201 DGFTPAGVGYGNIT-EELVERSKKKK-LSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDR-- 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~tlLn~l~~~K-vs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~-- 276 (666)
++...|.+||-||| ||++|.|.++| +.+++.+|.. |++-+|=.+.+...-+.+|++-|-+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGr----------------Tq~iNff~~~~~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGR----------------TQLINFFEVDDELRLVDLPGYGYAKVP 86 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCc----------------cceeEEEEecCcEEEEeCCCcccccCC
Confidence 35566778999999 67779999976 4666665543 6665554444332233457664432
Q ss_pred ---------HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 277 ---------VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 277 ---------~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.+.+.+.. -++-..+++|+|++++. ...|+.++++|.. ...|+++|+||+|.+++
T Consensus 87 k~~~e~w~~~i~~YL~~---R~~L~~vvlliD~r~~~----~~~D~em~~~l~~---------~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 87 KEVKEKWKKLIEEYLEK---RANLKGVVLLIDARHPP----KDLDREMIEFLLE---------LGIPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHHHHHHHHHHHhh---chhheEEEEEEECCCCC----cHHHHHHHHHHHH---------cCCCeEEEEEccccCCh
Confidence 23333222 13467899999999953 4567888898886 34689999999999987
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCC--eEEEEecccCcchhhHHHHHHhhc
Q 005977 348 QVSPTRLDRWVRHRAKAGGAPKLN--GVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~--~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
....+.+.. ..+.++.+... .++++|+.++.|+++|...|.+.+
T Consensus 151 ~~~~k~l~~----v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 151 SERNKQLNK----VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred hHHHHHHHH----HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 653322222 22222222122 289999999999999999998764
No 43
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.25 E-value=2.1e-11 Score=131.21 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=93.4
Q ss_pred eeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccc-ccc---ccCcch----HH
Q 005977 205 PAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEV-AEN---LIPDFD----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~-~q~---~iP~~d----f~ 275 (666)
.++||+||+|| ||||++...+.. ....+.+ |..-+.|.+.... .++ .+|+.. ..
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~~~-va~y~fT----------------T~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~ 222 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAKPK-IADYPFT----------------TLVPNLGVVRVDDGRSFVIADIPGLIEGASEG 222 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC----------------ccCCEEEEEEeCCceEEEEEeCCCcccCCccc
Confidence 35699999995 555988876622 1111111 2222222222111 111 235442 11
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+-|..++.+ .++.++++++|+|+.+...+.+.+....+.+.|..+.. .. ..+|+++|+||+|++.... +.
T Consensus 223 ~gLg~~flr--hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l--~~kp~IIV~NK~DL~~~~~----~~ 292 (329)
T TIGR02729 223 AGLGHRFLK--HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--EL--AEKPRIVVLNKIDLLDEEE----LA 292 (329)
T ss_pred ccHHHHHHH--HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hh--ccCCEEEEEeCccCCChHH----HH
Confidence 223344444 56779999999999986444444444445455543210 01 2468999999999976532 34
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+.+++.+..+. .++++||+++.|+++|++.|.+.+
T Consensus 293 ~~~~~l~~~~~~----~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 293 ELLKELKKALGK----PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHcCC----cEEEEEccCCcCHHHHHHHHHHHh
Confidence 444444444443 389999999999999999998653
No 44
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=3.9e-11 Score=129.44 Aligned_cols=159 Identities=23% Similarity=0.249 Sum_probs=92.4
Q ss_pred eeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecc-cccccc---cCcch----HH
Q 005977 205 PAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKN-EVAENL---IPDFD----FD 275 (666)
Q Consensus 205 ~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~-~~~q~~---iP~~d----f~ 275 (666)
.++||+||+|| ||||++...|.. ....+.+ |..-+.|.+.. ...++. +|+.. ..
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~-va~ypfT----------------T~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPK-IADYPFT----------------TLHPNLGVVRVDDYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCc----------------eeCceEEEEEeCCCcEEEEEeCCCccCCCCcc
Confidence 36699999995 555988877633 2222222 33333343332 111222 35542 11
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
.-|..++.+ .++.++++++|+|+.+.. +.+....+.+.|..+.. .+ ..+|+++|+||+|+++..... .
T Consensus 224 ~gLg~~flr--hie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~--~L--~~kp~IIV~NKiDL~~~~~~~---~ 291 (335)
T PRK12299 224 AGLGHRFLK--HIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSP--EL--ADKPRILVLNKIDLLDEEEER---E 291 (335)
T ss_pred ccHHHHHHH--HhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhh--hc--ccCCeEEEEECcccCCchhHH---H
Confidence 224444445 567799999999998754 23333444455544210 00 246899999999998654311 1
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
...+......+. .++++||+++.|+++|++.|.+.+.
T Consensus 292 ~~~~~~~~~~~~----~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 KRAALELAALGG----PVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHHHhcCC----CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 112222233332 3899999999999999999987643
No 45
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.22 E-value=4.8e-11 Score=113.87 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=61.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. . +.+....+.+.+..... ....+|+++|+||+|+.+... +..|+..+.....
T Consensus 75 ~~~~~d~vi~v~D~~~~~-~-~~~~~~~~~~~l~~~~~----~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDD-D-PVEDYKTIRNELELYNP----ELLEKPRIVVLNKIDLLDEEE----LFELLKELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCC-C-HHHHHHHHHHHHHHhCc----cccccccEEEEEchhcCCchh----hHHHHHHHHhhCC
Confidence 345689999999999852 1 12222333344433210 002468999999999987654 3445444444321
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||+++.|+++|++.|.++
T Consensus 145 ---~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 ---GKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ---CCCEEEEecCCCCCHHHHHHHHHhh
Confidence 1238999999999999999998764
No 46
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=2.8e-11 Score=132.81 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=102.3
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc-------Ccc
Q 005977 201 DGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI-------PDF 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i-------P~~ 272 (666)
+|+-.+++|+|||| |||||.|.++-.+|++.-+.+ ||+.....+.-....+.+ -..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT----------------TRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT----------------TRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC----------------ccceEEEEEEECCEEEEEEecCCcccCc
Confidence 69999999999999 788899999998877776655 777655555433333322 111
Q ss_pred hHHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 273 DFDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 273 df~~~L-~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.-..+ ..+.++ .++++|+|++|+|++.+.. ..+..++..+. .++|+++|+||+||.++....
T Consensus 280 d~VE~iGIeRs~~--~i~~ADlvL~v~D~~~~~~----~~d~~~~~~~~----------~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 280 DVVERIGIERAKK--AIEEADLVLFVLDASQPLD----KEDLALIELLP----------KKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred cHHHHHHHHHHHH--HHHhCCEEEEEEeCCCCCc----hhhHHHHHhcc----------cCCCEEEEEechhcccccccc
Confidence 222222 234444 6789999999999998522 22333333111 457899999999999775521
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. + ++ ..+. .++.+||+++.|++.|.+.|.+++.
T Consensus 344 ~-~-~~------~~~~----~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 344 S-E-KL------ANGD----AIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred h-h-hc------cCCC----ceEEEEecCccCHHHHHHHHHHHHh
Confidence 1 1 11 1121 3899999999999999999988754
No 47
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=1.2e-10 Score=129.01 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=95.0
Q ss_pred eeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccc-ccccc---cCcchH----H
Q 005977 205 PAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNE-VAENL---IPDFDF----D 275 (666)
Q Consensus 205 ~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~-~~q~~---iP~~df----~ 275 (666)
.++||+|||| ||+||++...|..++ ..+.+ |..-++|.+... ..++. +|+... .
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak~kIa-~ypfT----------------Tl~PnlG~v~~~~~~~~~laD~PGliega~~~ 223 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAKPKIA-NYHFT----------------TLVPNLGVVETDDGRSFVMADIPGLIEGASEG 223 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccc-cCCcc----------------eeceEEEEEEEeCCceEEEEECCCCccccccc
Confidence 4669999999 555599988774332 22232 333344444322 12222 365421 1
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
.-|...+.+ .++.++++++|+|+.+.++..+.+....+.+.|..+.. .. ..+|+|+|+||+||... ...+.
T Consensus 224 ~gLg~~fLr--hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L--~~kP~IVV~NK~DL~~~---~e~l~ 294 (424)
T PRK12297 224 VGLGHQFLR--HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RL--LERPQIVVANKMDLPEA---EENLE 294 (424)
T ss_pred chHHHHHHH--HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hc--cCCcEEEEEeCCCCcCC---HHHHH
Confidence 223334444 56779999999999875444454444555566654311 01 24689999999997322 12233
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+. +.++. .++++||+++.|+++|++.|.+.+.
T Consensus 295 ~l~----~~l~~----~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EFK----EKLGP----KVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HHH----HHhCC----cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 332 33332 3899999999999999999987643
No 48
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.17 E-value=8.8e-11 Score=109.86 Aligned_cols=84 Identities=25% Similarity=0.218 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+..... ...+...++. .+.|+++|+||+|+..... . .......+
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~----~~~~~~~~~~---------~~~piiiv~nK~D~~~~~~----~----~~~~~~~~ 131 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPA----DEEIAKYLRK---------SKKPVILVVNKVDNIKEED----E----AAEFYSLG 131 (157)
T ss_pred HHHhCCEEEEEEeccccCCcc----HHHHHHHHHh---------cCCCEEEEEECcccCChHH----H----HHHHHhcC
Confidence 456799999999998743322 2234444443 3468999999999986543 1 11122344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||+++.|+++|++.|.+.
T Consensus 132 ---~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 132 ---FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ---CCCeEEEecccCCCHHHHHHHHHhh
Confidence 3358999999999999999998764
No 49
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.15 E-value=4.7e-10 Score=105.87 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=55.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+. ..+ .... .+..+... +.+|+++|+||+|+...... ......+....+..+
T Consensus 71 ~~~~ad~ii~V~d~~~~--~~~-~~~~-~~~~~~~~--------~~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 137 (164)
T cd04171 71 GAGGIDLVLLVVAADEG--IMP-QTRE-HLEILELL--------GIKRGLVVLTKADLVDEDWL-ELVEEEIRELLAGTF 137 (164)
T ss_pred hhhcCCEEEEEEECCCC--ccH-hHHH-HHHHHHHh--------CCCcEEEEEECccccCHHHH-HHHHHHHHHHHHhcC
Confidence 45679999999999862 112 1111 12222221 23489999999999754211 111222222222221
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.. ...++++||+++.|+++|++.|..
T Consensus 138 ~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 138 LA-DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cC-CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 11 234999999999999999998864
No 50
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.14 E-value=1.8e-10 Score=109.47 Aligned_cols=137 Identities=20% Similarity=0.311 Sum_probs=92.3
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchH-HHHHHHHhc
Q 005977 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDF-DRVIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df-~~~L~~~l~ 283 (666)
..||+...|||+| ++|.++... -+|-|+ ..+++.+ +..|+.-+ .+.+.+.+.
T Consensus 5 mliG~~g~GKTTL~q~L~~~~~~--~~KTq~------------------i~~~~~~------IDTPGEyiE~~~~y~aLi 58 (143)
T PF10662_consen 5 MLIGPSGSGKTTLAQALNGEEIR--YKKTQA------------------IEYYDNT------IDTPGEYIENPRFYHALI 58 (143)
T ss_pred EEECCCCCCHHHHHHHHcCCCCC--cCccce------------------eEecccE------EECChhheeCHHHHHHHH
Confidence 4689999998888 666665421 112111 1111111 23465433 345566665
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 005977 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 284 rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k 363 (666)
. ...++|+|++|.|+.++...+|+..... -++|+|-|+||+|+.+.....++..+|+ +
T Consensus 59 ~--ta~dad~V~ll~dat~~~~~~pP~fa~~----------------f~~pvIGVITK~Dl~~~~~~i~~a~~~L----~ 116 (143)
T PF10662_consen 59 V--TAQDADVVLLLQDATEPRSVFPPGFASM----------------FNKPVIGVITKIDLPSDDANIERAKKWL----K 116 (143)
T ss_pred H--HHhhCCEEEEEecCCCCCccCCchhhcc----------------cCCCEEEEEECccCccchhhHHHHHHHH----H
Confidence 5 6789999999999999888888653322 1358999999999985544444455554 5
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
..| +.+||.||+.+|.|+++|+++|.+
T Consensus 117 ~aG---~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 117 NAG---VKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred HcC---CCCeEEEECCCCcCHHHHHHHHhC
Confidence 567 567999999999999999999863
No 51
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.14 E-value=1.4e-10 Score=125.88 Aligned_cols=153 Identities=26% Similarity=0.223 Sum_probs=85.7
Q ss_pred CCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcc----
Q 005977 201 DGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF---- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~---- 272 (666)
.++..++|||||+| +|++|++.+.+ .+++.++.+ .......++. ..+ ..++. .|++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~t-------T~d~~~~~i~---~~~-----~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFA-------TLDPTTRRLD---LPD-----GGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCcc-------ccCCEEEEEE---eCC-----CceEEEEecCcccccC
Confidence 35788899999999 56669999876 333333322 1112222211 101 01111 1333
Q ss_pred --hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC
Q 005977 273 --DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 273 --df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
+....+.+. .. .+.++|+|++|+|+.++... .. ...+...|..... ..+|+++|+||+|+.+...
T Consensus 252 ~~~lie~f~~t-le--~~~~ADlil~VvD~s~~~~~--~~-~~~~~~~L~~l~~------~~~piIlV~NK~Dl~~~~~- 318 (351)
T TIGR03156 252 PHELVAAFRAT-LE--EVREADLLLHVVDASDPDRE--EQ-IEAVEKVLEELGA------EDIPQLLVYNKIDLLDEPR- 318 (351)
T ss_pred CHHHHHHHHHH-HH--HHHhCCEEEEEEECCCCchH--HH-HHHHHHHHHHhcc------CCCCEEEEEEeecCCChHh-
Confidence 111122221 12 35679999999999986421 11 1222233433211 3468999999999975422
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+..+ .. + ...++++||++|.|+++|++.|.+.
T Consensus 319 ---v~~~-----~~-~---~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 ---IERL-----EE-G---YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---HHHH-----Hh-C---CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2221 11 1 1238999999999999999998753
No 52
>COG1159 Era GTPase [General function prediction only]
Probab=99.12 E-value=6.5e-11 Score=123.60 Aligned_cols=105 Identities=27% Similarity=0.276 Sum_probs=70.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCcccccccChhhHHH
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLMSMRLNRDEQKM 477 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~~~~L~~~e~~~ 477 (666)
+.|.+||+||||||||+|+|++.....+ |+.|.|||+.++--... +.++.++||||+..|......+ -....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIv-----S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~--m~~~a 79 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIV-----SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGEL--MNKAA 79 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEee-----cCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHH--HHHHH
Confidence 5789999999999999999998875544 79999999976532222 3578899999999996432210 00111
Q ss_pred HHhhhhccceeeEecCCCeeeecceEEEEeccC
Q 005977 478 VEIRKELQPRTYRVKGGQAVHVGGLMRLDLDQA 510 (666)
Q Consensus 478 ~~~~kel~p~t~~lk~gqsl~lgGL~rlD~l~~ 510 (666)
....+++....|.+...+..-.+.-..++.++.
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~ 112 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKK 112 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhh
Confidence 123466677778777666555554444455544
No 53
>COG2262 HflX GTPases [General function prediction only]
Probab=99.09 E-value=2.6e-10 Score=123.32 Aligned_cols=175 Identities=19% Similarity=0.127 Sum_probs=96.4
Q ss_pred ceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc--cCcchHHHHHH
Q 005977 203 FTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL--IPDFDFDRVIA 279 (666)
Q Consensus 203 ~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~--iP~~df~~~L~ 279 (666)
+..++|||.|+|| |++|.|.+.- .-+..+.+| .....-.|+.---....+..+..-|+ +|.. +-....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFA-------TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~-LV~AFk 263 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGAD-VYVADQLFA-------TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP-LVEAFK 263 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccC-eeccccccc-------cccCceeEEEeCCCceEEEecCccCcccCChH-HHHHHH
Confidence 4567899999995 5559888554 222333333 11122222211111112211211111 2332 222223
Q ss_pred HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 005977 280 TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR 359 (666)
Q Consensus 280 ~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~ 359 (666)
+.+.. ...+|++++|||++++. ..+-.+...+.|..... ..+|+|+|+||+|+++.... ...+.
T Consensus 264 sTLEE---~~~aDlllhVVDaSdp~---~~~~~~~v~~vL~el~~------~~~p~i~v~NKiD~~~~~~~----~~~~~ 327 (411)
T COG2262 264 STLEE---VKEADLLLHVVDASDPE---ILEKLEAVEDVLAEIGA------DEIPIILVLNKIDLLEDEEI----LAELE 327 (411)
T ss_pred HHHHH---hhcCCEEEEEeecCChh---HHHHHHHHHHHHHHcCC------CCCCEEEEEecccccCchhh----hhhhh
Confidence 33333 46899999999999973 21212223334443322 34799999999999976541 11111
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC--ccEEEEccCCCC
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR--GNVWVIGAQNAG 410 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~--~~v~vvG~~NvG 410 (666)
. +. ...++|||++|.|++.|++.|.+.++.. ...+.+.+...|
T Consensus 328 ----~-~~---~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~ 372 (411)
T COG2262 328 ----R-GS---PNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAG 372 (411)
T ss_pred ----h-cC---CCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccccc
Confidence 1 11 1489999999999999999998876532 233455666666
No 54
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.08 E-value=1.7e-09 Score=100.69 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=56.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++...... .+... ..+|+++|+||+||.+.....+....|. +..+
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~----~~~~~------------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~----~~~~ 118 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP----GFASI------------FVKPVIGLVTKIDLAEADVDIERAKELL----ETAG 118 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh----hHHHh------------ccCCeEEEEEeeccCCcccCHHHHHHHH----HHcC
Confidence 35789999999999987654321 12111 1238999999999976443333334443 3333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHH
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
...++.+||++|.|+++|++.|.
T Consensus 119 ---~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 119 ---AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ---CCcEEEEecCCCCCHHHHHHHHh
Confidence 22489999999999999998874
No 55
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.07 E-value=1.9e-09 Score=101.33 Aligned_cols=83 Identities=24% Similarity=0.198 Sum_probs=56.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++.. ...++..+.. .++|+++|+||+|+..... +..+.+.+...++.
T Consensus 73 ~~~d~vi~v~d~~~~~~------~~~~~~~~~~---------~~~~~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~~- 132 (158)
T cd01879 73 EKPDLIVNVVDATNLER------NLYLTLQLLE---------LGLPVVVALNMIDEAEKRG----IKIDLDKLSELLGV- 132 (158)
T ss_pred CCCcEEEEEeeCCcchh------HHHHHHHHHH---------cCCCEEEEEehhhhccccc----chhhHHHHHHhhCC-
Confidence 57999999999987421 1122222322 3468999999999976543 22233333344453
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++++||+++.|+++|++.|...
T Consensus 133 ---~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 133 ---PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---CeEEEEccCCCCHHHHHHHHHHH
Confidence 38999999999999999998765
No 56
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.06 E-value=3.1e-10 Score=124.67 Aligned_cols=64 Identities=30% Similarity=0.398 Sum_probs=54.1
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCCc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHPH 464 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~~ 464 (666)
.++.++.++|.||||||||+|+|+++....+ ++.||||||+++....+++ .+.|+||.|++...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-----TdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIV-----TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEe-----cCCCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 4578999999999999999999999876554 6999999999987655554 67899999999554
No 57
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.06 E-value=4.8e-10 Score=117.52 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=95.6
Q ss_pred eccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc-cc---cCcc----hHHHH
Q 005977 207 GVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NL---IPDF----DFDRV 277 (666)
Q Consensus 207 ~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q-~~---iP~~----df~~~ 277 (666)
.||.||+| |||||.|...|- +...-+++ |---|-|.+..+... +. +|+. +..+=
T Consensus 201 LVG~PNAGKSTLL~als~AKp-kVa~YaFT----------------TL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG 263 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSRAKP-KVAHYAFT----------------TLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG 263 (366)
T ss_pred eecCCCCcHHHHHHHhhccCC-ccccccee----------------eeccccceeeccccceeEeccCccccccccccCc
Confidence 47999999 677799988883 33333333 211233433332211 12 2433 33333
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH
Q 005977 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
|...+.+ .++.+..++||||+..+.-..|.+....+...|+.+.. ....+|.++|+||+|+...+. ..
T Consensus 264 lG~~FLr--HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek----~L~~rp~liVaNKiD~~eae~------~~ 331 (366)
T KOG1489|consen 264 LGYKFLR--HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK----GLADRPALIVANKIDLPEAEK------NL 331 (366)
T ss_pred ccHHHHH--HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh----hhccCceEEEEeccCchhHHH------HH
Confidence 3334455 67889999999999987444455555556666654421 113468999999999963322 22
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+..+.+.+. -.+|+++||+++.|+++|++.|+..
T Consensus 332 l~~L~~~lq---~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 332 LSSLAKRLQ---NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHcC---CCcEEEeeeccccchHHHHHHHhhc
Confidence 333334443 2269999999999999999988753
No 58
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.04 E-value=5.7e-10 Score=106.72 Aligned_cols=100 Identities=20% Similarity=0.143 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCC---CCcHHHHHHHHHHHHHhhhhh-hhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDG---MFPKRAAKSLFKKLEEAKDDA-KLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA 362 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~g---s~p~~id~~L~~~L~~~~~~~-~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~ 362 (666)
....+|+|++|+|+.+... ..+......+...+....... ......+|+++|+||+|+..... +..|.....
T Consensus 71 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~ 146 (176)
T cd01881 71 HIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----LEEELVREL 146 (176)
T ss_pred HHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----HHHHHHHHH
Confidence 3467999999999988530 011111122222222110000 00002468999999999986543 333311111
Q ss_pred HhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.... ...++.+||+++.|+++|++.|..
T Consensus 147 ~~~~---~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 147 ALEE---GAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hcCC---CCCEEEEehhhhcCHHHHHHHHHh
Confidence 1111 234999999999999999998864
No 59
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.04 E-value=1.1e-09 Score=104.44 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=55.8
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL 370 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~ 370 (666)
+|++++|+|+.+..+. .......+++.+.... ...|+|+|+||+|+..... +.. .+.+.+..+
T Consensus 80 ~d~~l~v~d~~~~~~~-~~~~~~~~~~~l~~~~-------~~~pvilv~NK~Dl~~~~~----~~~-~~~~~~~~~---- 142 (168)
T cd01897 80 RAAVLFLFDPSETCGY-SLEEQLSLFEEIKPLF-------KNKPVIVVLNKIDLLTFED----LSE-IEEEEELEG---- 142 (168)
T ss_pred cCcEEEEEeCCccccc-chHHHHHHHHHHHhhc-------CcCCeEEEEEccccCchhh----HHH-HHHhhhhcc----
Confidence 5899999999886432 2122233444444310 2468999999999975433 221 122222222
Q ss_pred CeEEEEecccCcchhhHHHHHHhh
Q 005977 371 NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 371 ~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..++.+||++|.|+++|++.|.+.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHH
Confidence 238999999999999999998764
No 60
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=1.1e-09 Score=121.58 Aligned_cols=162 Identities=18% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecce-ecccccccccCcch----
Q 005977 200 LDGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQ-VKNEVAENLIPDFD---- 273 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygk-v~~~~~q~~iP~~d---- 273 (666)
.+.+..+++|+||+|| |++|++.+....++...+ +.+..+....- .+.+. +. -+..|+..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~---------gtt~~~~~~~~-~~~~~~~~----lvDT~G~~~~~~ 236 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA---------GTTRDSIDTPF-ERDGQKYT----LIDTAGIRRKGK 236 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC---------CceEEEEEEEE-EECCeeEE----EEECCCCCCCcc
Confidence 3567889999999995 555999887633322211 11111111110 00110 00 01124421
Q ss_pred ----HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 274 ----FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 274 ----f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
...+......+ ++..+|++++|+|+.+.. .. .+..++..+.. ..+|+++|+||+|+++...
T Consensus 237 ~~~~~e~~~~~~~~~--~~~~ad~~ilViD~~~~~--~~--~~~~i~~~~~~---------~~~~~ivv~NK~Dl~~~~~ 301 (435)
T PRK00093 237 VTEGVEKYSVIRTLK--AIERADVVLLVIDATEGI--TE--QDLRIAGLALE---------AGRALVIVVNKWDLVDEKT 301 (435)
T ss_pred hhhHHHHHHHHHHHH--HHHHCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCcEEEEEECccCCCHHH
Confidence 22222122223 456799999999998742 22 23334443332 3468999999999984322
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 350 SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 ~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+.++....+..-....++++||++|.|+++|++.+.+.
T Consensus 302 ----~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 302 ----MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred ----HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 23333332222221113459999999999999999988764
No 61
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.03 E-value=2.5e-09 Score=102.96 Aligned_cols=86 Identities=13% Similarity=0.230 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+.....+. .+.. .. ..+|+++|+||+|+... ....+..|+ +..+
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~----~~-------~~~~ii~v~nK~Dl~~~--~~~~~~~~~----~~~~ 119 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLD----IG-------VSKRQIAVISKTDMPDA--DVAATRKLL----LETG 119 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHh----cc-------CCCCeEEEEEccccCcc--cHHHHHHHH----HHcC
Confidence 35679999999999875433221 1211 10 23589999999998542 233344443 3444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. ...++++||++|.|+++|+++|.+..
T Consensus 120 ~--~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 120 F--EEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred C--CCCEEEEECCCccCHHHHHHHHHHhc
Confidence 2 12499999999999999999998764
No 62
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.02 E-value=2.5e-09 Score=105.50 Aligned_cols=107 Identities=24% Similarity=0.269 Sum_probs=68.9
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |...+.+ ++..+|++++|||+.+.. .+ ....++..+.. .+.|+|+|+||+|++..
T Consensus 78 PG~~~f~~~~~~------~~~~~D~ailvVda~~g~--~~--~~~~~l~~~~~---------~~~p~ivvlNK~D~~~~- 137 (188)
T PF00009_consen 78 PGHEDFIKEMIR------GLRQADIAILVVDANDGI--QP--QTEEHLKILRE---------LGIPIIVVLNKMDLIEK- 137 (188)
T ss_dssp SSSHHHHHHHHH------HHTTSSEEEEEEETTTBS--TH--HHHHHHHHHHH---------TT-SEEEEEETCTSSHH-
T ss_pred ccccceeecccc------eecccccceeeeeccccc--cc--ccccccccccc---------cccceEEeeeeccchhh-
Confidence 7653 4444443 456799999999999842 22 22334444443 34579999999999821
Q ss_pred CChHHHHHHHHHHHHhCCCCC--CCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPK--LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~--~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.....+.++...+.+..+... ...|+++||.+|+|++.|++.|.+++|
T Consensus 138 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111223334334445555432 346999999999999999999998876
No 63
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.02 E-value=4.9e-10 Score=108.35 Aligned_cols=59 Identities=31% Similarity=0.369 Sum_probs=43.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
+|.++|.||||||||+|+|++.. .+ ++++||||.+.......+ +..+.++||||+....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~-----v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QK-----VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EE-----EEESTTSSSEEEEEEEEETTEEEEEEE----SSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ce-----ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC
Confidence 68999999999999999999876 33 369999999976543333 3478999999997653
No 64
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.01 E-value=1.5e-09 Score=103.50 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=58.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. + .......+...++... ..+.|+++|+||+|+.+.. ....+..++.......+
T Consensus 70 ~~~~~~~~v~vvd~~~~~-~-~~~~~~~~~~~~~~~~------~~~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~ 140 (167)
T cd04160 70 YYAECHAIIYVIDSTDRE-R-FEESKSALEKVLRNEA------LEGVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIG 140 (167)
T ss_pred HhCCCCEEEEEEECchHH-H-HHHHHHHHHHHHhChh------hcCCCEEEEEEccccccCC-CHHHHHHHhcccccccc
Confidence 345789999999998743 1 1122222222222110 1346899999999986543 23334555433322222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.. ...++.+||++|.|++++++.|.+
T Consensus 141 ~~-~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 141 RR-DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CC-ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 11 225999999999999999998863
No 65
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.01 E-value=1.2e-09 Score=120.95 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+.. .. .+..++..+.. .++|+|+|+||+||+... .....+.+.....+.
T Consensus 251 ~~~~ad~~ilV~D~~~~~--~~--~~~~~~~~~~~---------~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 251 AIERADVVLLVLDATEGI--TE--QDLRIAGLILE---------AGKALVIVVNKWDLVKDE---KTREEFKKELRRKLP 314 (429)
T ss_pred HHHhCCEEEEEEECCCCc--cH--HHHHHHHHHHH---------cCCcEEEEEECcccCCCH---HHHHHHHHHHHHhcc
Confidence 457799999999998742 22 22333333332 346899999999998321 223333333333322
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.-....++++||++|.|+++|++.|.+..
T Consensus 315 ~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 315 FLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 11134599999999999999999987653
No 66
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.00 E-value=1.5e-09 Score=122.42 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=67.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+... .. +..++..+.. .++|+|+|+||+||..... ...+.. .....+.
T Consensus 290 ~i~~ad~vilV~Da~~~~s--~~--~~~~~~~~~~---------~~~piIiV~NK~Dl~~~~~-~~~~~~---~i~~~l~ 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPIS--EQ--DQRVLSMVIE---------AGRALVLAFNKWDLVDEDR-RYYLER---EIDRELA 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCC--HH--HHHHHHHHHH---------cCCCEEEEEECcccCChhH-HHHHHH---HHHHhcc
Confidence 4567999999999988432 11 2223333332 3568999999999985432 111111 1111222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
...+..++++||++|.|+++|++.|.+.+..... .+ +++.+|.++...
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~-------~i-~t~~ln~~~~~~ 400 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETALESWDT-------RI-PTGRLNAWLGEL 400 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc-------cC-CHHHHHHHHHHH
Confidence 1113458999999999999999999876542211 11 366778877643
No 67
>PRK04213 GTP-binding protein; Provisional
Probab=99.00 E-value=7.6e-09 Score=102.42 Aligned_cols=94 Identities=20% Similarity=0.191 Sum_probs=58.0
Q ss_pred ccccCEEEEEEecCCCCCCC-------cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMF-------PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH 360 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~-------p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~ 360 (666)
...+++|++|+|+..+.... ....+..+...+.. .+.|+++|+||+|+.... ...+..+.
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~p~iiv~NK~Dl~~~~--~~~~~~~~-- 154 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---------LGIPPIVAVNKMDKIKNR--DEVLDEIA-- 154 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---------cCCCeEEEEECccccCcH--HHHHHHHH--
Confidence 45678999999987643210 01122334444432 346899999999997543 12233332
Q ss_pred HHHhCCCC----CC-CeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 361 RAKAGGAP----KL-NGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 361 ~~k~~g~~----~~-~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
+.++.. .. ..++++||++| |+++|++.|.+.+++
T Consensus 155 --~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 --ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred --HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 233321 00 23899999999 999999999876543
No 68
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.00 E-value=7.4e-09 Score=100.01 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=63.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|+|+.+.... ....++..+.. .+.|+++|+||+|+..... ......+++...+..+
T Consensus 82 ~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~---------~~~~i~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 82 GLSVSDGAILVVDANEGVQP----QTREHLRIARE---------GGLPIIVAINKIDRVGEED-LEEVLREIKELLGLIG 147 (189)
T ss_pred HHHhcCEEEEEEECCCCCcH----HHHHHHHHHHH---------CCCCeEEEEECCCCcchhc-HHHHHHHHHHHHcccc
Confidence 34579999999999874321 12233333332 3468999999999987433 1223344444433333
Q ss_pred C----------CCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 A----------PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~----------~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. .....++++||++|.|+++|++.|...+++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 1 124569999999999999999999887653
No 69
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.00 E-value=2e-09 Score=100.56 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=61.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++... ....+...+.. .+.|+++|+||+|+..... .+..+...+....+
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~----~~~~~~~~~~~---------~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~ 142 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGE----GDEFILELLKK---------SKTPVILVLNKIDLVKDKE---DLLPLLEKLKELGP 142 (168)
T ss_pred HHHhCCEEEEEEECCCccCc----hHHHHHHHHHH---------hCCCEEEEEEchhccccHH---HHHHHHHHHHhccC
Confidence 35678999999999986322 22334444433 2358999999999984322 25555555544432
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+|++++.|+++|.+.|.++
T Consensus 143 ---~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ---FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---CCceEEEEeccCCChHHHHHHHHhh
Confidence 3458999999999999999999764
No 70
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=3.1e-09 Score=100.55 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=59.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.... ...+...+.. .++|+++|+||+|+..... ..+..+.+...+.++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~~---------~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 145 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQ----DLRIAGLILE---------EGKALVIVVNKWDLVEKDS--KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchh----HHHHHHHHHh---------cCCCEEEEEeccccCCccH--HHHHHHHHHHHhhcc
Confidence 345789999999998864321 1222232222 3468999999999986531 123333333333333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
......++++||+++.|++++++.+...
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2113459999999999999999988753
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.97 E-value=6.5e-09 Score=102.62 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH---RAK 363 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~---~~k 363 (666)
....+|.+++|+|+.+.. .... .+. +..... ...|+++|+||+|++........+..+.+. ...
T Consensus 88 ~~~~~d~vi~VvD~~~~~--~~~~-~~~-~~~~~~---------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 88 GAQIIDLMLLVVDATKGI--QTQT-AEC-LVIGEI---------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHhhCCEEEEEEECCCCc--cHHH-HHH-HHHHHH---------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999998732 2211 111 121211 235899999999998544322222222222 121
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
..+.. ...++++||++|.|+++|+++|.+..+.
T Consensus 155 ~~~~~-~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFK-NSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcC-CCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11211 2249999999999999999999876554
No 72
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.97 E-value=9.9e-09 Score=99.04 Aligned_cols=91 Identities=22% Similarity=0.167 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.... .. ...+ ..+.. .+.|+++|+||+|+..... ...... +.+.++
T Consensus 87 ~~~~ad~~i~v~D~~~~~~~--~~-~~~~-~~~~~---------~~~~iiiv~NK~Dl~~~~~-~~~~~~----~~~~~~ 148 (179)
T cd01890 87 SLAACEGALLLVDATQGVEA--QT-LANF-YLALE---------NNLEIIPVINKIDLPSADP-ERVKQQ----IEDVLG 148 (179)
T ss_pred HHHhcCeEEEEEECCCCccH--hh-HHHH-HHHHH---------cCCCEEEEEECCCCCcCCH-HHHHHH----HHHHhC
Confidence 44579999999999874321 11 1111 11111 3468999999999864321 111222 223344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+ ...++.+||++|.|+++|++.|.+.++
T Consensus 149 ~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 149 LD-PSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CC-cccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 32 235899999999999999999987654
No 73
>PRK11058 GTPase HflX; Provisional
Probab=98.97 E-value=2.2e-09 Score=119.42 Aligned_cols=90 Identities=23% Similarity=0.273 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++.. ... ...+...|..... ..+|+|+|+||+|+++... ..+. . ...+
T Consensus 273 ~~~~ADlIL~VvDaS~~~~--~e~-l~~v~~iL~el~~------~~~pvIiV~NKiDL~~~~~--~~~~----~--~~~~ 335 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRV--QEN-IEAVNTVLEEIDA------HEIPTLLVMNKIDMLDDFE--PRID----R--DEEN 335 (426)
T ss_pred HhhcCCEEEEEEeCCCccH--HHH-HHHHHHHHHHhcc------CCCCEEEEEEcccCCCchh--HHHH----H--HhcC
Confidence 3568999999999988532 111 1112233332211 3468999999999975421 1111 1 1123
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+ .++++||++|.|+++|++.|.+.+.
T Consensus 336 ~~---~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 336 KP---IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CC---ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 22 2578999999999999999987654
No 74
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.91 E-value=3.5e-09 Score=125.05 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=59.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|+|+.+.. ... +..++..+.. .++|+|+|+||+||++... ...+.. .+...+.
T Consensus 529 ~i~~advvilViDat~~~--s~~--~~~i~~~~~~---------~~~piIiV~NK~DL~~~~~-~~~~~~---~~~~~l~ 591 (712)
T PRK09518 529 AIERSELALFLFDASQPI--SEQ--DLKVMSMAVD---------AGRALVLVFNKWDLMDEFR-RQRLER---LWKTEFD 591 (712)
T ss_pred HhhcCCEEEEEEECCCCC--CHH--HHHHHHHHHH---------cCCCEEEEEEchhcCChhH-HHHHHH---HHHHhcc
Confidence 457799999999998743 221 2223333322 3568999999999986432 111222 1222221
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.-.+..++++||++|.|+++|++.+.+..+
T Consensus 592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 592 RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 112456899999999999999999987654
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.91 E-value=2.3e-08 Score=96.18 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. ++ ..+ ..++..+++.. ....|+++|+||+|+..+. ........+ ....
T Consensus 73 ~~~~~d~il~v~d~~~~~-s~-~~~-~~~~~~~~~~~------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (168)
T cd01866 73 YYRGAAGALLVYDITRRE-TF-NHL-TSWLEDARQHS------NSNMTIMLIGNKCDLESRREVSYEEGEAF----AKEH 139 (168)
T ss_pred HhccCCEEEEEEECCCHH-HH-HHH-HHHHHHHHHhC------CCCCcEEEEEECcccccccCCCHHHHHHH----HHHc
Confidence 345789999999998732 11 112 12222232211 1346899999999998433 222333333 3344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||+++.|+++++..+.+.
T Consensus 140 ~~----~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 140 GL----IFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999888654
No 76
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.90 E-value=2.2e-08 Score=100.66 Aligned_cols=89 Identities=16% Similarity=0.029 Sum_probs=53.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-PTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|+|+.+.. .. ....+...+... ..+++|+|+||+|+...... ...+..-++.+.+.+
T Consensus 97 ~~~~ad~~llVvD~~~~~--~~--~~~~~~~~~~~~--------~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~ 164 (208)
T cd04166 97 GASTADLAILLVDARKGV--LE--QTRRHSYILSLL--------GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL 164 (208)
T ss_pred hhhhCCEEEEEEECCCCc--cH--hHHHHHHHHHHc--------CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc
Confidence 456799999999998742 11 122222333221 23467889999999753221 112222333444555
Q ss_pred CCCCCCeEEEEecccCcchhhHH
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl 388 (666)
+.+ ...++++||++|.|+.+..
T Consensus 165 ~~~-~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 165 GIE-DITFIPISALDGDNVVSRS 186 (208)
T ss_pred CCC-CceEEEEeCCCCCCCccCC
Confidence 642 2358999999999988654
No 77
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.90 E-value=4.1e-08 Score=93.30 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=56.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhC--
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG-- 365 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~-- 365 (666)
...+|++++|+|+.+.. .. . ....+..+.. .+.|+++|+||+|+..... ..+...+..+....
T Consensus 71 ~~~~d~il~v~d~~~~~--~~-~-~~~~~~~~~~---------~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~ 135 (168)
T cd01887 71 ASLTDIAILVVAADDGV--MP-Q-TIEAIKLAKA---------ANVPFIVALNKIDKPNANP--ERVKNELSELGLQGED 135 (168)
T ss_pred HhhcCEEEEEEECCCCc--cH-H-HHHHHHHHHH---------cCCCEEEEEEceecccccH--HHHHHHHHHhhccccc
Confidence 45689999999998743 11 1 1122233332 3468999999999874321 22222222211110
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.......++.+||++|.|+++|++.|.++
T Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 136 EWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 01112358999999999999999999865
No 78
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.89 E-value=2.1e-08 Score=100.35 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=54.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.... .+ ..+.++..+... +.+++|+|+||+|++......+.+.+.++.+....|
T Consensus 85 ~~~~~D~~ilVvda~~g~--~~--~~~~~~~~~~~~--------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 85 GAAQMDGAILVVSATDGP--MP--QTREHLLLARQV--------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred HhhhCCEEEEEEECCCCC--cH--HHHHHHHHHHHc--------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 567899999999998732 22 133344444432 223478999999998533322334445555666666
Q ss_pred CC-CCCeEEEEecccCcchh
Q 005977 367 AP-KLNGVYLVSARKDLGVR 385 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg~Gv~ 385 (666)
+. ....++++||++|.++.
T Consensus 153 ~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 153 FDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccccCCeEEEeeCccccCCC
Confidence 42 12459999999999853
No 79
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.89 E-value=2.5e-08 Score=93.66 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=57.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+++|+|+.+.. ++ ..+.. +...+.+.. .....|+++|+||+|+..+......+..+ .+..+.
T Consensus 70 ~~~~~~~i~v~~~~~~~-s~-~~~~~-~~~~i~~~~-----~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 137 (162)
T cd04138 70 MRTGEGFLCVFAINSRK-SF-EDIHT-YREQIKRVK-----DSDDVPMVLVGNKCDLAARTVSSRQGQDL----AKSYGI 137 (162)
T ss_pred HhcCCEEEEEEECCCHH-HH-HHHHH-HHHHHHHhc-----CCCCCCEEEEEECcccccceecHHHHHHH----HHHhCC
Confidence 44689999999988732 11 12222 222222211 11356899999999998654433333333 234443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||++|.|++++++.|.+.
T Consensus 138 ----~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 ----PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ----eEEEecCCCCCCHHHHHHHHHHH
Confidence 38999999999999999988753
No 80
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.89 E-value=1.6e-09 Score=107.85 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=50.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
..|+++|+||||||||||+|+++... +.+|..||.|+.+..+. +...+.++|.||+-.-..
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~L----ArtSktPGrTq~iNff~--~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNL----ARTSKTPGRTQLINFFE--VDDELRLVDLPGYGYAKV 85 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcce----eecCCCCCccceeEEEE--ecCcEEEEeCCCcccccC
Confidence 47999999999999999999986542 23489999999877665 566799999999986554
No 81
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.88 E-value=4e-09 Score=95.60 Aligned_cols=61 Identities=39% Similarity=0.388 Sum_probs=46.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+|+|+|.+|+|||||||+|++..... ++..||+|+........+. ..+.++||||+.....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-----~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-----VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-----ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-----ccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 48999999999999999999754333 3688999998744332233 3568999999987654
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.88 E-value=1.8e-08 Score=95.24 Aligned_cols=91 Identities=22% Similarity=0.189 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++.. ...+... +..+.... ....|+++|+||+|+...... .........+..+.
T Consensus 70 ~~~~~~ii~v~d~~~~~s--~~~~~~~-~~~~~~~~------~~~~~iilv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 137 (161)
T cd01861 70 IRDSSVAVVVYDITNRQS--FDNTDKW-IDDVRDER------GNDVIIVLVGNKTDLSDKRQV---STEEGEKKAKELNA 137 (161)
T ss_pred hccCCEEEEEEECcCHHH--HHHHHHH-HHHHHHhC------CCCCEEEEEEEChhccccCcc---CHHHHHHHHHHhCC
Confidence 457899999999987431 2222222 23232211 124689999999999643321 12222223334342
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||+++.|+++|++.|.+.
T Consensus 138 ----~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 138 ----MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHh
Confidence 38999999999999999998753
No 83
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.87 E-value=4.4e-09 Score=117.91 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=86.0
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcch-HH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~d-f~ 275 (666)
.|+..+++|+||+|| +++|++.+.+.++++..+.+ ++......+......+ ..|++. +.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt----------------T~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGT----------------TRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc----------------ccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 588889999999995 55599998875544433322 1111111111111111 124432 11
Q ss_pred HHH----HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 276 RVI----ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 276 ~~L----~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
..+ .+.... ...++|++++|+|+.++... . +..++. .. ..+|+++|+||+|+.+...
T Consensus 278 ~~ie~~gi~~~~~--~~~~aD~il~VvD~s~~~s~---~-~~~~l~---~~--------~~~piiiV~NK~DL~~~~~-- 338 (449)
T PRK05291 278 DEVEKIGIERSRE--AIEEADLVLLVLDASEPLTE---E-DDEILE---EL--------KDKPVIVVLNKADLTGEID-- 338 (449)
T ss_pred cHHHHHHHHHHHH--HHHhCCEEEEEecCCCCCCh---h-HHHHHH---hc--------CCCCcEEEEEhhhccccch--
Confidence 111 111222 45789999999999875421 1 112211 11 3468999999999975432
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.. ...+ ..++.+||++|.|+++|++.|.+.+.
T Consensus 339 --~~-------~~~~----~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 339 --LE-------EENG----KPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred --hh-------hccC----CceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 11 1112 23899999999999999999987643
No 84
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.87 E-value=3.9e-08 Score=94.17 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+.. . ...+..++..... ......|+++|+||+||.+... .......+ .+.+
T Consensus 70 ~~~~~~~~l~v~d~~~~~-----s-~~~~~~~~~~i~~---~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 136 (165)
T cd01865 70 YYRGAMGFILMYDITNEE-----S-FNAVQDWSTQIKT---YSWDNAQVILVGNKCDMEDERVVSSERGRQL----ADQL 136 (165)
T ss_pred HccCCcEEEEEEECCCHH-----H-HHHHHHHHHHHHH---hCCCCCCEEEEEECcccCcccccCHHHHHHH----HHHc
Confidence 346799999999998742 1 1122233322110 1113468999999999976433 22222332 3345
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 137 ~~----~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GF----EFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHH
Confidence 53 389999999999999999987653
No 85
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.87 E-value=1.5e-08 Score=96.22 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=55.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. + .....+.+...++... . ..+|+++|+||+|+..... ...+.. .+.....
T Consensus 63 ~~~~~~~ii~v~d~~~~~-~-~~~~~~~~~~~~~~~~----~--~~~piiiv~nK~Dl~~~~~-~~~i~~---~~~~~~~ 130 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRD-R-LGTAKEELHAMLEEEE----L--KGAVLLVFANKQDMPGALS-EAEISE---KLGLSEL 130 (158)
T ss_pred HhcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHhchh----h--cCCcEEEEEeCCCCCCCCC-HHHHHH---HhCcccc
Confidence 346799999999998742 1 1112233333332211 0 2469999999999964432 111211 1100000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
......++++||++|.|+++|++.|.+
T Consensus 131 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 131 KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 000124999999999999999998863
No 86
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.86 E-value=4.9e-09 Score=111.18 Aligned_cols=99 Identities=27% Similarity=0.302 Sum_probs=70.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++.+-++++|||+...++..|.+....|...|..+.. ++ ..+|.|||+||+|++-..+ .++...+++.+..+
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--~L--~~K~~ivv~NKiD~~~~~e---~~~~~~~~l~~~~~ 306 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--KL--AEKPRIVVLNKIDLPLDEE---ELEELKKALAEALG 306 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH--Hh--ccCceEEEEeccCCCcCHH---HHHHHHHHHHHhcC
Confidence 45668899999999988777777777778788877532 22 3468899999999654332 24555555554444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.. . .++|||.+++|+++|+..+.+++
T Consensus 307 ~~--~-~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WE--V-FYLISALTREGLDELLRALAELL 332 (369)
T ss_pred CC--c-ceeeehhcccCHHHHHHHHHHHH
Confidence 31 1 22399999999999999988753
No 87
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.86 E-value=4.2e-08 Score=93.41 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=56.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|+|+.+... ...+. .++..+... .....|+++|+||+|+..... .......+ ....+
T Consensus 73 ~~~~~~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (165)
T cd01868 73 YRGAVGALLVYDITKKQT--FENVE-RWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTEEAKAF----AEKNG 139 (165)
T ss_pred HCCCCEEEEEEECcCHHH--HHHHH-HHHHHHHHh------CCCCCeEEEEEECccccccccCCHHHHHHH----HHHcC
Confidence 456899999999987431 11122 222223221 113468999999999975432 22223333 23333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 140 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 140 L----SFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred C----EEEEEECCCCCCHHHHHHHHHHH
Confidence 2 38999999999999999988753
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.86 E-value=2e-08 Score=93.14 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=83.9
Q ss_pred eeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHHhcC
Q 005977 206 AGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMK 284 (666)
Q Consensus 206 a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~r 284 (666)
+.+|.||+|||+ +|++...+.+..... + ....+..+.....+. .... .-+..|+......+...
T Consensus 4 ~~~G~~~~GKStl~~~l~~~~~~~~~~~--t-------~~~~~~~~~~~~~~~-~~~~--~l~D~~g~~~~~~~~~~--- 68 (159)
T cd00154 4 VLIGDSGVGKTSLLLRFVDGKFDENYKS--T-------IGVDFKSKTIEIDGK-TVKL--QIWDTAGQERFRSITPS--- 68 (159)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCccCC--c-------eeeeeEEEEEEECCE-EEEE--EEEecCChHHHHHHHHH---
Confidence 568999999555 599887775432110 0 011111111111100 0000 00123654433333333
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCC-CCCCChHHHHHHHHHHHH
Q 005977 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL-PSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 285 P~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLL-pk~~~~~~L~~wl~~~~k 363 (666)
...++|++++|+|+.++.. ...+. .++..+.... ....|+++|+||+|+. +.......+..|. .
T Consensus 69 --~~~~~d~ii~v~d~~~~~~--~~~~~-~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~ 133 (159)
T cd00154 69 --YYRGAHGAILVYDITNRES--FENLD-KWLKELKEYA------PENIPIILVGNKIDLEDQRQVSTEEAQQFA----K 133 (159)
T ss_pred --HhcCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHhC------CCCCcEEEEEEcccccccccccHHHHHHHH----H
Confidence 3457999999999987431 11222 2333333211 0246899999999997 4444444444443 3
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHH
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
..+. .++.+||+++.|++++++.|.
T Consensus 134 ~~~~----~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 134 ENGL----LFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HcCC----eEEEEecCCCCCHHHHHHHHh
Confidence 3333 499999999999999998875
No 89
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.4e-09 Score=116.57 Aligned_cols=63 Identities=27% Similarity=0.472 Sum_probs=53.2
Q ss_pred cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCC
Q 005977 395 AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLH 462 (666)
Q Consensus 395 l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~ 462 (666)
+..+.++.++|.||||||||+|+|.+.....+ |+.||||||.+..+..+.+ .++|+||.|++.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-----Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIV-----SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEe-----CCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 44578999999999999999999998876554 7999999999877654433 689999999998
No 90
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.85 E-value=3e-08 Score=97.46 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=84.4
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHH
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATR 281 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~ 281 (666)
+..+++|.||+|||+| +++.+.+.+... + +. .... ... .++.+.. .-+.+|+..-.+.+...
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~~--~-t~-------~~~~----~~~-~~~~~~~--~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQ--P-TQ-------HPTS----EEL-AIGNIKF--TTFDLGGHQQARRLWKD 80 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccC--C-cc-------ccce----EEE-EECCEEE--EEEECCCCHHHHHHHHH
Confidence 5567799999996555 999887643210 0 00 0000 000 0111100 00123665433333332
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 005977 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR 361 (666)
Q Consensus 282 l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~ 361 (666)
...++|.+++|+|+.++.. + ......+...+... . ..+.|+++|+||+|+.. ....+.+..++.-.
T Consensus 81 -----~~~~ad~ii~vvD~~~~~~-~-~~~~~~l~~l~~~~----~--~~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~ 146 (184)
T smart00178 81 -----YFPEVNGIVYLVDAYDKER-F-AESKRELDALLSDE----E--LATVPFLILGNKIDAPY-AASEDELRYALGLT 146 (184)
T ss_pred -----HhCCCCEEEEEEECCcHHH-H-HHHHHHHHHHHcCh----h--hcCCCEEEEEeCccccC-CCCHHHHHHHcCCC
Confidence 3467999999999987431 1 11222222222210 0 03468999999999853 23333444433110
Q ss_pred HHh-----CCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 362 AKA-----GGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 362 ~k~-----~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
... .+. +...|+++||++|.|++++++.|.+
T Consensus 147 ~~~~~~~~~~~-~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 147 NTTGSKGKVGV-RPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccccccCC-ceeEEEEeecccCCChHHHHHHHHh
Confidence 000 011 2446999999999999999999875
No 91
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.85 E-value=2.4e-08 Score=94.47 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=83.9
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc-cccCcchHHHHHHH
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NLIPDFDFDRVIAT 280 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q-~~iP~~df~~~L~~ 280 (666)
+-.+++|.||+|||+| +++.+.... .....+ ....+...|.- .+... ..+ +..|+..-...+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t-------~~~~~~~~~~~---~~~~~--~~~i~Dt~G~~~~~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPT-------IEDSYTKQCEI---DGQWA--ILDILDTAGQEEFSAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCC-------ccceEEEEEEE---CCEEE--EEEEEECCCCcchhHHHH
Confidence 3456799999996665 888766521 111111 11122223321 11100 000 12365432222333
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHH
Q 005977 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVR 359 (666)
Q Consensus 281 ~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~ 359 (666)
. ....+|.+++|+|+.+... + ..+.. ++..+.+.. ...+.|+++|+||+|+..... ......
T Consensus 69 ~-----~~~~~~~~ilv~d~~~~~s-~-~~~~~-~~~~~~~~~-----~~~~~piiiv~NK~Dl~~~~~~~~~~~~---- 131 (164)
T cd04145 69 Q-----YMRTGEGFLLVFSVTDRGS-F-EEVDK-FHTQILRVK-----DRDEFPMILVGNKADLEHQRKVSREEGQ---- 131 (164)
T ss_pred H-----HHhhCCEEEEEEECCCHHH-H-HHHHH-HHHHHHHHh-----CCCCCCEEEEeeCccccccceecHHHHH----
Confidence 2 3456899999999987431 1 12222 222222210 113468999999999975432 212222
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+.+..+. .++.+||++|.|++++++.|.+.
T Consensus 132 ~~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 132 ELARKLKI----PYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred HHHHHcCC----cEEEeeCCCCCCHHHHHHHHHHh
Confidence 33344443 38999999999999999988754
No 92
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.85 E-value=1.1e-08 Score=95.55 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=54.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+...... ..++. .. ..+|+++|+||+|+.+.... .....+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~----~~~~~---~~--------~~~~vi~v~nK~D~~~~~~~----------~~~~~~ 131 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEED----LEILE---LP--------ADKPIIVVLNKSDLLPDSEL----------LSLLAG 131 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHH----HHHHH---hh--------cCCCEEEEEEchhcCCcccc----------ccccCC
Confidence 3467999999999997543221 11111 11 34689999999999876541 111222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..++.+||+++.|+++|++.|.+.
T Consensus 132 ----~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 132 ----KPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred ----CceEEEECCCCCCHHHHHHHHHHh
Confidence 248999999999999999999864
No 93
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.85 E-value=3.3e-08 Score=94.43 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.++.. ......++..+... .....|+++|+||+|+..... ....... +.+..+
T Consensus 73 ~~~~d~~llv~d~~~~~s---~~~~~~~~~~i~~~------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 139 (165)
T cd01864 73 YRSANGAIIAYDITRRSS---FESVPHWIEEVEKY------GASNVVLLLIGNKCDLEEQREVLFEEACT----LAEKNG 139 (165)
T ss_pred hccCCEEEEEEECcCHHH---HHhHHHHHHHHHHh------CCCCCcEEEEEECcccccccccCHHHHHH----HHHHcC
Confidence 457899999999987431 11112233333321 113468999999999975432 2222223 233333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||++|.|++++++.|.+.
T Consensus 140 ---~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 140 ---MLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ---CcEEEEEECCCCCCHHHHHHHHHHh
Confidence 3358999999999999999988753
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.84 E-value=6.3e-08 Score=90.98 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=84.7
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHHhc
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLM 283 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~ 283 (666)
.+++|++|+|||+| |++...+....... .....+..++.....+ .+.. .-+..|+......+...
T Consensus 3 i~i~G~~~~GKStli~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~--~~~D~~g~~~~~~~~~~-- 68 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEKHES---------TTQASFFQKTVNIGGK-RIDL--AIWDTAGQERYHALGPI-- 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCcCC---------ccceeEEEEEEEECCE-EEEE--EEEECCchHHHHHhhHH--
Confidence 46799999997665 98887764321100 0112222222222110 1100 00113553333333332
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHH
Q 005977 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRA 362 (666)
Q Consensus 284 rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~ 362 (666)
...++|.+++|+|+.+... ... ...+++.+.... . ...|+++|+||+|+..... ....+..+ .
T Consensus 69 ---~~~~~~~~i~v~d~~~~~s--~~~-~~~~~~~i~~~~-----~-~~~piiiv~nK~D~~~~~~~~~~~~~~~----~ 132 (162)
T cd04123 69 ---YYRDADGAILVYDITDADS--FQK-VKKWIKELKQMR-----G-NNISLVIVGNKIDLERQRVVSKSEAEEY----A 132 (162)
T ss_pred ---HhccCCEEEEEEECCCHHH--HHH-HHHHHHHHHHhC-----C-CCCeEEEEEECcccccccCCCHHHHHHH----H
Confidence 3457899999999987431 111 122333333321 1 2468999999999985432 22223332 2
Q ss_pred HhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+..+. .++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~~----~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 133 KSVGA----KHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHcCC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 34443 38999999999999999998753
No 95
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.84 E-value=2.3e-08 Score=94.50 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=85.0
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc-cccCcchHHHHHHHHhc
Q 005977 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE-NLIPDFDFDRVIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q-~~iP~~df~~~L~~~l~ 283 (666)
+.+|+||+|||+| +++.+.+....... ......+.......+.... .+ +.+|+......+...
T Consensus 4 ~v~G~~~~GKTtli~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~l~D~~G~~~~~~~~~~-- 68 (164)
T smart00175 4 ILIGDSGVGKSSLLSRFTDGKFSEQYKS-----------TIGVDFKTKTIEVDGKRVK--LQIWDTAGQERFRSITSS-- 68 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCC-----------ceeeEEEEEEEEECCEEEE--EEEEECCChHHHHHHHHH--
Confidence 5689999996665 98887764211100 1111111122222221100 01 123554322223222
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHH
Q 005977 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRA 362 (666)
Q Consensus 284 rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~ 362 (666)
....+|++++|+|+.++... ..+ ..++..+.... ....|+++|+||+|+.+.. ...+....|.
T Consensus 69 ---~~~~~d~~ilv~d~~~~~s~--~~~-~~~l~~~~~~~------~~~~pivvv~nK~D~~~~~~~~~~~~~~~~---- 132 (164)
T smart00175 69 ---YYRGAVGALLVYDITNRESF--ENL-KNWLKELREYA------DPNVVIMLVGNKSDLEDQRQVSREEAEAFA---- 132 (164)
T ss_pred ---HhCCCCEEEEEEECCCHHHH--HHH-HHHHHHHHHhC------CCCCeEEEEEEchhcccccCCCHHHHHHHH----
Confidence 34579999999999874311 111 11222222211 1346999999999987633 3334444443
Q ss_pred HhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+..+. .++.+||+++.|++++++.|.+.+
T Consensus 133 ~~~~~----~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 133 EEHGL----PFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred HHcCC----eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34453 289999999999999999997653
No 96
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.83 E-value=2.6e-08 Score=118.17 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=58.9
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.+... ...+...+.+ .+.|+++|+||+|+..+... ..-.+.+.+.+|.+
T Consensus 84 ~~aD~vI~VvDat~ler------~l~l~~ql~e---------~giPvIvVlNK~Dl~~~~~i----~id~~~L~~~LG~p 144 (772)
T PRK09554 84 GDADLLINVVDASNLER------NLYLTLQLLE---------LGIPCIVALNMLDIAEKQNI----RIDIDALSARLGCP 144 (772)
T ss_pred cCCCEEEEEecCCcchh------hHHHHHHHHH---------cCCCEEEEEEchhhhhccCc----HHHHHHHHHHhCCC
Confidence 57899999999987431 1123333333 34689999999999754432 22233344566765
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+..
T Consensus 145 ----VvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 145 ----VIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ----EEEEEeecCCCHHHHHHHHHHhh
Confidence 99999999999999999998754
No 97
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.83 E-value=6.9e-08 Score=91.28 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+++... + ..+ ..++..+.+... ........|+++|+||+|+.++ .........|. +..+
T Consensus 70 ~~~~d~~ilv~D~~~~~s-~-~~~-~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 141 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQS-F-EAL-DSWLKEMKQEGG-PHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA----ESKG 141 (168)
T ss_pred hccCCEEEEEEECCCHHH-H-HhH-HHHHHHHHHhcc-ccccCCCceEEEEEEchhcccccccCHHHHHHHH----HHcC
Confidence 457899999999987431 1 111 122222322110 0000034689999999999743 22333334443 3344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 142 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 142 F----KYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred C----eEEEEECCCCCCHHHHHHHHHHH
Confidence 3 28999999999999999998753
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.83 E-value=7.6e-08 Score=91.82 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + .... .+.+.+..... .....+.|+++|+||+|+.. .......+..|. +..
T Consensus 69 ~~~~~d~~i~v~d~~~~~~-~-~~~~-~~~~~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 139 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKS-F-ESLD-SWRDEFLIQAS--PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC----QSN 139 (172)
T ss_pred HhcCCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhcC--ccCCCCceEEEEEECcccccccccCHHHHHHHH----HHc
Confidence 3457999999999987431 1 1111 12222111100 00012568999999999984 333334444443 344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+ ...++.+||++|.|++++++.|.+.
T Consensus 140 ~---~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 140 G---NIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred C---CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4 2359999999999999999998764
No 99
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.81 E-value=4.9e-08 Score=90.69 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.. . ......+...+.... ....|+++|+||+|+..... ...+.........
T Consensus 64 ~~~~~d~ii~v~d~~~~~~-~-~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~ 131 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTA-L-EAAKNELHDLLEKPS------LEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSI 131 (159)
T ss_pred HHhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHcChh------hcCCCEEEEEeCccccCCcC----HHHHHHHhCcccc
Confidence 3457899999999987431 1 111122222221110 03468999999999876543 2222211110000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
......++.+||++|.|++++++.|.+
T Consensus 132 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 132 TDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cCCceEEEEEEeccCCChHHHHHHHhh
Confidence 011234799999999999999998864
No 100
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.81 E-value=2.9e-08 Score=98.64 Aligned_cols=86 Identities=31% Similarity=0.356 Sum_probs=56.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++..... ...+.+.+.... ...+|+++|+||+|+.+... ...+ ....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~---~~~~~~~l~~~~------~~~~~viiV~NK~Dl~~~~~----~~~~----~~~~-- 178 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQ---IETVEKVLKELG------AEDIPMILVLNKIDLLDDEE----LEER----LEAG-- 178 (204)
T ss_pred HhcCCeEEEEEECCCCChhhH---HHHHHHHHHHcC------cCCCCEEEEEEccccCChHH----HHHH----hhcC--
Confidence 457899999999998542211 122233333321 13468999999999986543 2211 1222
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||+++.|++++++.|...
T Consensus 179 --~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 179 --RPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred --CCceEEEEcCCCCCHHHHHHHHHhh
Confidence 2348999999999999999988753
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.80 E-value=3.1e-08 Score=94.10 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+. .+...+.+.. .....|+++|+||+|+.+... .......+. +..+
T Consensus 69 ~~~~~~~i~v~d~~~~~s-~-~~~~-~~~~~i~~~~-----~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~----~~~~ 136 (164)
T smart00173 69 MRTGEGFLLVYSITDRQS-F-EEIK-KFREQILRVK-----DRDDVPIVLVGNKCDLESERVVSTEEGKELA----RQWG 136 (164)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEECccccccceEcHHHHHHHH----HHcC
Confidence 356899999999987431 1 1111 1222222211 113468999999999976432 222233332 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 137 ~----~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 137 C----PFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred C----EEEEeecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 102
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.80 E-value=7.4e-08 Score=95.03 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=58.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+.. + ...+ ..++..+... .....|+++|+||+|+.... ..... .+.+.+..+
T Consensus 71 ~~~ad~~i~v~D~~~~~-s-~~~~-~~~~~~i~~~------~~~~~piiiv~NK~Dl~~~~~~~~~~----~~~l~~~~~ 137 (191)
T cd04112 71 YRDAHALLLLYDITNKA-S-FDNI-RAWLTEIKEY------AQEDVVIMLLGNKADMSGERVVKRED----GERLAKEYG 137 (191)
T ss_pred ccCCCEEEEEEECCCHH-H-HHHH-HHHHHHHHHh------CCCCCcEEEEEEcccchhccccCHHH----HHHHHHHcC
Confidence 45689999999998742 1 1112 2223333322 11346899999999997432 22222 223334445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. .++.+||++|.|+++|+..|.+.+
T Consensus 138 ~----~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 138 V----PFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3 389999999999999999998654
No 103
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.80 E-value=2.9e-08 Score=96.41 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=54.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH-HHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH-RAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~-~~k~~ 365 (666)
....+|++++|+|+.+... + ......+...+.... ....|+++|+||+|+.... ....+...+.. ..+..
T Consensus 79 ~~~~~d~vi~V~D~s~~~~-~-~~~~~~l~~~~~~~~------~~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~ 149 (174)
T cd04153 79 YYTNTDAVILVIDSTDRER-L-PLTKEELYKMLAHED------LRKAVLLVLANKQDLKGAM-TPAEISESLGLTSIRDH 149 (174)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHhchh------hcCCCEEEEEECCCCCCCC-CHHHHHHHhCcccccCC
Confidence 3467999999999987431 1 112223333322210 0346899999999986432 22222221100 00011
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. -.++.+||++|.|++++++.|..
T Consensus 150 ~----~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 150 T----WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred c----eEEEecccCCCCCHHHHHHHHhc
Confidence 1 14899999999999999998863
No 104
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.3e-08 Score=114.31 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=92.4
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCc------ch
Q 005977 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPD------FD 273 (666)
Q Consensus 204 ~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~------~d 273 (666)
..|.||.||+|||+| |++.|.+.. .-.-+..|-.|.-|.+.....++. +|+ +.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~-----------------VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQK-----------------VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCce-----------------ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 367899999997777 999999821 111222233333333332222211 242 23
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
.+..+.+.+.. ..+.|+|+.|||+...+-+ ....++ |.+ -+.|+|+++|++|...+..-
T Consensus 68 ~DE~Var~~ll---~~~~D~ivnVvDAtnLeRn-----LyltlQ-LlE---------~g~p~ilaLNm~D~A~~~Gi--- 126 (653)
T COG0370 68 EDEKVARDFLL---EGKPDLIVNVVDATNLERN-----LYLTLQ-LLE---------LGIPMILALNMIDEAKKRGI--- 126 (653)
T ss_pred chHHHHHHHHh---cCCCCEEEEEcccchHHHH-----HHHHHH-HHH---------cCCCeEEEeccHhhHHhcCC---
Confidence 44555443322 2678999999999874311 111222 222 24579999999999876441
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.--.+.+.+.+|.| |+++||++|.|+++|++.|.+..+.
T Consensus 127 -~ID~~~L~~~LGvP----Vv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 127 -RIDIEKLSKLLGVP----VVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred -cccHHHHHHHhCCC----EEEEEeecCCCHHHHHHHHHHhccc
Confidence 11122344577887 9999999999999999999876543
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.79 E-value=1.3e-07 Score=89.61 Aligned_cols=92 Identities=25% Similarity=0.265 Sum_probs=58.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... ......++..+.... ....|+++|+||+|+.+.. .....+..+ .+..
T Consensus 70 ~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~ 136 (163)
T cd01860 70 YYRGAAAAIVVYDITSEES---FEKAKSWVKELQRNA------SPNIIIALVGNKADLESKRQVSTEEAQEY----ADEN 136 (163)
T ss_pred HhccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhC------CCCCeEEEEEECccccccCcCCHHHHHHH----HHHc
Confidence 3457899999999987431 111223333333321 1346899999999987432 222233333 3344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. .++.+||++|.|+.+|++.|.+.+
T Consensus 137 ~~----~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 137 GL----LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHh
Confidence 43 389999999999999999987653
No 106
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.79 E-value=1e-07 Score=91.04 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+.. ++ ..+ ..++..+.+.. ....|+++|+||+|+..... .......|. +..+
T Consensus 72 ~~~~~~ii~v~d~~~~~-s~-~~l-~~~~~~~~~~~------~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 138 (166)
T cd01869 72 YRGAHGIIIVYDVTDQE-SF-NNV-KQWLQEIDRYA------SENVNKLLVGNKCDLTDKRVVDYSEAQEFA----DELG 138 (166)
T ss_pred hCcCCEEEEEEECcCHH-HH-HhH-HHHHHHHHHhC------CCCCcEEEEEEChhcccccCCCHHHHHHHH----HHcC
Confidence 45789999999998743 11 111 11222232211 13468999999999875432 223333332 3444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 139 ~----~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 139 I----PFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred C----eEEEEECCCCcCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 107
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.78 E-value=2.6e-08 Score=97.27 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=49.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..++.+++|+|+..... ..+..++..+.. .++|+++|+||+|+++.......+.. ++......+.
T Consensus 99 ~~~~~ii~vvd~~~~~~----~~~~~~~~~~~~---------~~~pviiv~nK~D~~~~~~~~~~~~~-i~~~l~~~~~- 163 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLK----ELDLEMLEWLRE---------RGIPVLIVLTKADKLKKSELNKQLKK-IKKALKKDAD- 163 (179)
T ss_pred hhhcEEEEEecCCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECcccCCHHHHHHHHHH-HHHHHhhccC-
Confidence 35689999999986321 223334444433 34689999999999854322222222 2333333321
Q ss_pred CCCeEEEEecccCcchh
Q 005977 369 KLNGVYLVSARKDLGVR 385 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~ 385 (666)
...++++||++|.|++
T Consensus 164 -~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 -DPSVQLFSSLKKTGID 179 (179)
T ss_pred -CCceEEEECCCCCCCC
Confidence 1259999999999974
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.78 E-value=5.5e-08 Score=91.85 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=54.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|+|+.+... + ......+...+.. ......+.|+++|+||+|+..... ...+...+.. ....
T Consensus 65 ~~~~~d~ii~v~D~~~~~~-~-~~~~~~~~~~~~~----~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~--~~~~ 135 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLR-L-VVVKDELELLLNH----PDIKHRRVPILFFANKMDLPDALT-AVKITQLLGL--ENIK 135 (162)
T ss_pred HHccCCEEEEEEeCCcHHH-H-HHHHHHHHHHHcC----cccccCCCCEEEEEeCccccCCCC-HHHHHHHhCC--cccc
Confidence 3457999999999987431 1 1111222121111 001113578999999999975432 1112211100 0000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...-.++.+||++|.|++++++.|.+
T Consensus 136 -~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 136 -DKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -CceEEEEEeeCCCCCchHHHHHHHhc
Confidence 00124788999999999999998853
No 109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.78 E-value=1.6e-07 Score=94.61 Aligned_cols=93 Identities=27% Similarity=0.333 Sum_probs=57.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~g 366 (666)
..++|++|+|+|+.++.. + ..+ ..+...+.+... .....+|+++|+||+||.. +.........+ .+..+
T Consensus 71 ~~~ad~iilV~D~t~~~s-~-~~~-~~w~~~l~~~~~---~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~ 140 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQS-F-ENL-EDWYSMVRKVLK---SSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANG 140 (215)
T ss_pred hhcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhcc---ccCCCceEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 457999999999987531 1 111 222233333210 0012357899999999974 33333333343 33444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. ..+.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 141 M----ESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred C----EEEEEECCCCCCHHHHHHHHHHH
Confidence 3 37889999999999999998764
No 110
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.77 E-value=9e-08 Score=90.49 Aligned_cols=91 Identities=23% Similarity=0.236 Sum_probs=56.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|+|+.+... .+....+...+.+.. .....|+++|+||+|+..... .......+ .+.++
T Consensus 70 ~~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 137 (163)
T cd04136 70 IKNGQGFVLVYSITSQSS---FNDLQDLREQILRVK-----DTENVPMVLVGNKCDLEDERVVSREEGQAL----ARQWG 137 (163)
T ss_pred hhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhc-----CCCCCCEEEEEECccccccceecHHHHHHH----HHHcC
Confidence 356899999999987431 111122223333211 113468999999999975432 21222222 23334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 138 C----PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred C----eEEEecCCCCCCHHHHHHHHHHh
Confidence 2 38999999999999999988753
No 111
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.77 E-value=5.5e-08 Score=92.08 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=58.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|+|+.+... + ..+.. +++.+.+.. .....|+++|+||+|+.......+....+. +..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s-~-~~~~~-~~~~i~~~~-----~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~----~~~~ 136 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDT-F-TNLET-WLNELETYS-----TNNDIVKMLVGNKIDKENREVTREEGLKFA----RKHN 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HhHHH-HHHHHHHhC-----CCCCCcEEEEEECCcccccccCHHHHHHHH----HHcC
Confidence 3457999999999987431 1 11222 233333321 113568999999999985554434344433 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. .++.+||++|.|++++++.+.+
T Consensus 137 ~----~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 M----LFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred C----EEEEEecCCCCCHHHHHHHHHH
Confidence 3 2899999999999999998865
No 112
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.75 E-value=8.3e-08 Score=90.74 Aligned_cols=95 Identities=22% Similarity=0.134 Sum_probs=54.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+.. + .......+...++... ..+.|+++|+||+|+..... ...+...+. ......
T Consensus 65 ~~~~~~iv~v~D~~~~~-~-~~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~-~~~i~~~~~--~~~~~~ 133 (160)
T cd04156 65 LENTDGLVYVVDSSDEA-R-LDESQKELKHILKNEH------IKGVPVVLLANKQDLPGALT-AEEITRRFK--LKKYCS 133 (160)
T ss_pred hccCCEEEEEEECCcHH-H-HHHHHHHHHHHHhchh------hcCCCEEEEEECcccccCcC-HHHHHHHcC--CcccCC
Confidence 45689999999998743 1 1222333333332210 03468999999999964321 122221110 001110
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.....++.+||++|.|++++++.|.+
T Consensus 134 ~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 134 DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CCcEEEEecccccCCChHHHHHHHhc
Confidence 00124888999999999999998864
No 113
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.74 E-value=1.7e-07 Score=89.74 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=57.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|.|+.+... ......+++.+..... ......|+++|+||+|+.+.. ........+. ...+
T Consensus 70 ~~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~---~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 139 (165)
T cd04140 70 ISKGHAFILVYSVTSKQS---LEELKPIYELICEIKG---NNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWN 139 (165)
T ss_pred hhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhc---CCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhC
Confidence 356889999999987431 1112233344433210 001346899999999997632 2222222332 2333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.++
T Consensus 140 ~----~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 C----AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred C----cEEEeecCCCCCHHHHHHHHHhc
Confidence 2 37899999999999999998764
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.74 E-value=1.7e-07 Score=89.02 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=61.9
Q ss_pred CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|+......|.+. ...++|++++|+|+.+... ...+ ..+++.+... . ...|+++|+||+|+.+...
T Consensus 60 ~G~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 60 AGQELYSDMVSN-----YWESPSVFILVYDVSNKAS--FENC-SRWVNKVRTA------S-KHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred CCHHHHHHHHHH-----HhCCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------C-CCCCEEEEEECcccccccC
Confidence 555443444333 4467999999999987421 1111 2222333221 0 2468999999999976543
Q ss_pred -ChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 350 -SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 -~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.......+ ....+. .++.+||+++.|+++|++.|.+.
T Consensus 125 ~~~~~~~~~----~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 125 VTDAQAQAF----AQANQL----KFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred CCHHHHHHH----HHHcCC----eEEEEeCCCCCChHHHHHHHHHH
Confidence 21122222 233342 38999999999999999988753
No 115
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.74 E-value=5.6e-08 Score=93.10 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=54.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ..+...+.+.+... .. ..+|++||+||+||.......+....|. . ....
T Consensus 64 ~~~~ad~~i~v~D~~~~~-s~-~~~~~~~~~~~~~~----~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~--~-~~~~ 132 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRE-RI-GEAREELQRMLNED----EL--RDAVLLVFANKQDLPNAMSAAEVTDKLG--L-HSLR 132 (159)
T ss_pred HhcCCCEEEEEEeCCCHH-HH-HHHHHHHHHHHhcH----Hh--cCCCEEEEEECCCCCCCCCHHHHHHHhC--c-cccC
Confidence 346799999999998743 11 12222232222211 11 3468999999999964322111112110 0 0000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+...++.+||++|.|++++++.|.+
T Consensus 133 -~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 133 -NRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred -CCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 01123678999999999999998863
No 116
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=6.5e-09 Score=114.37 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=98.0
Q ss_pred CCCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccC--------
Q 005977 200 LDGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIP-------- 270 (666)
Q Consensus 200 l~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP-------- 270 (666)
.-|--.|+||||||| |+|||.|..+-++|++..+.+ ||+-.--.+..+...+.+-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GT----------------TRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGT----------------TRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCc----------------chhhheeEeecCCeEEEEEeccccccc
Confidence 357778999999999 788899999999999887766 4443333333222222220
Q ss_pred cchHHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh--hhhhhcCCCcEEEEEeCCCCCCC
Q 005977 271 DFDFDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD--DAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 271 ~~df~~~L-~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~--~~~~~~~~kpvILVlNKiDLLpk 347 (666)
..+-...| .+++.+ .+..+|+|++|||+..-..+.+..+.+.+ +....... ..++ .++|+|+|.||+|+.++
T Consensus 330 ~~~~iE~~gI~rA~k--~~~~advi~~vvda~~~~t~sd~~i~~~l-~~~~~g~~~~~~~~--~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 330 SNDGIEALGIERARK--RIERADVILLVVDAEESDTESDLKIARIL-ETEGVGLVVIVNKM--EKQRIILVANKSDLVSK 404 (531)
T ss_pred cCChhHHHhHHHHHH--HHhhcCEEEEEecccccccccchHHHHHH-HHhccceEEEeccc--cccceEEEechhhccCc
Confidence 11111122 133444 66789999999999442222232222222 22211100 0111 34689999999999977
Q ss_pred C-CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 348 Q-VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ~-~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
- ........|. ...|.+.+.-+.++|++++.|++.|.+.|.+.
T Consensus 405 ~~~~~~~~~~~~----~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 405 IPEMTKIPVVYP----SAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cccccCCceecc----ccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 2 2111011121 11233334445669999999999999888654
No 117
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.73 E-value=1e-07 Score=93.42 Aligned_cols=91 Identities=25% Similarity=0.208 Sum_probs=58.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...+++++|+|+.+... ..+..+...+.. ...|+++|+||+|+++.... .++...++.......
T Consensus 105 ~~~~~~~~v~d~~~~~~----~~~~~i~~~l~~---------~~~~~iiv~nK~Dl~~~~~~-~~~~~~i~~~l~~~~-- 168 (196)
T PRK00454 105 ENLKGVVLLIDSRHPLK----ELDLQMIEWLKE---------YGIPVLIVLTKADKLKKGER-KKQLKKVRKALKFGD-- 168 (196)
T ss_pred ccceEEEEEEecCCCCC----HHHHHHHHHHHH---------cCCcEEEEEECcccCCHHHH-HHHHHHHHHHHHhcC--
Confidence 45678999999876432 122334444433 34579999999999865431 122222222222212
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
..++++||+++.|++++++.|.+++.+
T Consensus 169 --~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 --DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred --CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 248999999999999999999887654
No 118
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.72 E-value=6.9e-08 Score=107.45 Aligned_cols=169 Identities=17% Similarity=0.073 Sum_probs=87.2
Q ss_pred eeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHH--HHhhhcCc----ceee--------cceecceecceecccccccc
Q 005977 204 TPAGVGYGNITEELV-ERSKKKKLSKAERKKKAR--EAQKEKGE----VTVC--------ARCHSLRNYGQVKNEVAENL 268 (666)
Q Consensus 204 ~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~--~~~~~~~~----~~~C--------qRC~rLr~ygkv~~~~~q~~ 268 (666)
..+++|.||+||||| ++|....-++..+..+.- ++...... ..++ ...++...+..+.....++.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~ 87 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 87 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEE
Confidence 356799999996555 999987766554422111 11100000 0011 11122222222322222222
Q ss_pred ---cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCC
Q 005977 269 ---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDL 344 (666)
Q Consensus 269 ---iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDL 344 (666)
.|++. |.+.+. . .+..+|++++|+|+.+..+..+.. ...+..+... ..+++++|+||+|+
T Consensus 88 liDtpG~~~~~~~~~----~--~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~~--------~~~~iivviNK~Dl 151 (425)
T PRK12317 88 IVDCPGHRDFVKNMI----T--GASQADAAVLVVAADDAGGVMPQT--REHVFLARTL--------GINQLIVAINKMDA 151 (425)
T ss_pred EEECCCcccchhhHh----h--chhcCCEEEEEEEcccCCCCCcch--HHHHHHHHHc--------CCCeEEEEEEcccc
Confidence 37653 333332 2 456799999999998742222221 1222222221 23468999999999
Q ss_pred CCCCC-ChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhhHH
Q 005977 345 LPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 345 Lpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eLl 388 (666)
..... ....+...++.+.+..++.. ...++++||++|.|++++.
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 75321 11122333444444555321 2358999999999998754
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.71 E-value=2.1e-07 Score=89.25 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++.. ...+...+...++.. . ...|+++|+||+|+.+..... .+...+......+.
T Consensus 68 ~~~ad~~ilv~d~~~~~s--~~~~~~~~~~~i~~~------~-~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~- 136 (166)
T cd01893 68 IRKANVICLVYSVDRPST--LERIRTKWLPLIRRL------G-VKVPIILVGNKSDLRDGSSQA-GLEEEMLPIMNEFR- 136 (166)
T ss_pred cccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEchhcccccchh-HHHHHHHHHHHHHh-
Confidence 457999999999987431 111112233334331 1 346899999999998654321 11222222112221
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
....++.+||+++.|+++|++.+...
T Consensus 137 -~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 137 -EIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred -cccEEEEeccccccCHHHHHHHHHHH
Confidence 12348899999999999999988764
No 120
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.71 E-value=1.3e-07 Score=91.65 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. ++ ......+.+.+.... . ...|++||+||+|+... ...+.+..++.. .+...
T Consensus 73 ~~~~a~~ii~v~D~t~~~-s~-~~~~~~~~~~~~~~~----~--~~~piilv~NK~Dl~~~-~~~~~i~~~~~~-~~~~~ 142 (168)
T cd04149 73 YYTGTQGLIFVVDSADRD-RI-DEARQELHRIINDRE----M--RDALLLVFANKQDLPDA-MKPHEIQEKLGL-TRIRD 142 (168)
T ss_pred HhccCCEEEEEEeCCchh-hH-HHHHHHHHHHhcCHh----h--cCCcEEEEEECcCCccC-CCHHHHHHHcCC-CccCC
Confidence 346799999999998853 11 122233323222110 0 34689999999998643 223334444210 00001
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
..-.++.+||++|.|++++++.|.+
T Consensus 143 --~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 143 --RNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --CcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1124789999999999999998853
No 121
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.71 E-value=2.1e-07 Score=87.76 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....++.+++|+|+.++.. + ......+.. +.+.. .....|+++|+||+|+... .........+ ...+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s-~-~~~~~~~~~-~~~~~-----~~~~~piiiv~NK~D~~~~~~~~~~~~~~~----~~~~ 135 (164)
T cd04139 68 YHRSGEGFLLVFSITDMES-F-TATAEFREQ-ILRVK-----DDDNVPLLLVGNKCDLEDKRQVSSEEAANL----ARQW 135 (164)
T ss_pred HhhcCCEEEEEEECCCHHH-H-HHHHHHHHH-HHHhc-----CCCCCCEEEEEEccccccccccCHHHHHHH----HHHh
Confidence 3456789999999877421 1 112222222 22210 0134689999999999763 2222222222 2334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||+++.|+++|++.|.+.
T Consensus 136 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 136 GV----PYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred CC----eEEEeeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988764
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.70 E-value=9.7e-08 Score=93.42 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhC--
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG-- 365 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~-- 365 (666)
...++.+++|+|+.+.. ++ ......+...++.. ...+.|+++|+||+|+.. ......+..++.......
T Consensus 84 ~~~ad~iilV~D~~~~~-s~-~~~~~~~~~i~~~~------~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~ 154 (190)
T cd00879 84 FPEVDGIVFLVDAADPE-RF-QESKEELDSLLSDE------ELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGK 154 (190)
T ss_pred hccCCEEEEEEECCcHH-HH-HHHHHHHHHHHcCc------cccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccc
Confidence 45689999999998742 11 11222222222210 013468999999999964 233344555442110000
Q ss_pred ------CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 ------GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 ------g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.......++.+||++|.|++++++.|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 155 GVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 00011248999999999999999998764
No 123
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.70 E-value=9.9e-08 Score=93.74 Aligned_cols=93 Identities=25% Similarity=0.228 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH-HHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL-DRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L-~~wl~~~~k~~g 366 (666)
..++|++++|+|+.+.. ++ +....++..+... ..+.|+++|+||+|+.........+ ...+..+....+
T Consensus 71 ~~~~d~iilv~d~~~~~-s~--~~~~~~~~~i~~~-------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~ 140 (193)
T cd04118 71 YRGAKAAIVCYDLTDSS-SF--ERAKFWVKELQNL-------EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK 140 (193)
T ss_pred cCCCCEEEEEEECCCHH-HH--HHHHHHHHHHHhc-------CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC
Confidence 45799999999998742 11 1112233333321 1346899999999997543110001 112222333444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 141 A----QHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.70 E-value=2.6e-07 Score=88.29 Aligned_cols=88 Identities=23% Similarity=0.198 Sum_probs=55.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... ...+ ..++..+... ....|+++|+||+|+.+.. ...... +.+..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~-------~~~~p~ivv~nK~Dl~~~~--~~~~~~----~~~~~~ 132 (161)
T cd04124 69 YYHKAHACILVFDVTRKIT--YKNL-SKWYEELREY-------RPEIPCIVVANKIDLDPSV--TQKKFN----FAEKHN 132 (161)
T ss_pred HhCCCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh-------CCCCcEEEEEECccCchhH--HHHHHH----HHHHcC
Confidence 4567999999999987431 1111 2233333321 1246899999999985321 111112 223334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.+.+.
T Consensus 133 ~----~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 133 L----PLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988764
No 125
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.70 E-value=1.5e-07 Score=91.01 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=55.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+.. ++ ......+...+.... ....|+++|+||+|+.... ....+..+++... ..
T Consensus 79 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~~------~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~--~~- 146 (173)
T cd04154 79 FESTDALIWVVDSSDRL-RL-DDCKRELKELLQEER------LAGATLLILANKQDLPGAL-SEEEIREALELDK--IS- 146 (173)
T ss_pred hCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHhChh------hcCCCEEEEEECcccccCC-CHHHHHHHhCccc--cC-
Confidence 45799999999998742 11 112222222222110 1346899999999997543 2233444432110 00
Q ss_pred CCCCeEEEEecccCcchhhHHHHHH
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
.....++.+||++|.|++++++.|.
T Consensus 147 ~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 147 SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCceEEEeccCCCCcCHHHHHHHHh
Confidence 0122589999999999999998875
No 126
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.70 E-value=3e-07 Score=88.23 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+.. ++ ..+. .++..+.+. .....|+++|+||+|+.... ........+ .+..
T Consensus 72 ~~~~ad~~i~v~d~~~~~-s~-~~~~-~~~~~i~~~------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~ 138 (167)
T cd01867 72 YYRGAMGIILVYDITDEK-SF-ENIR-NWMRNIEEH------ASEDVERMLVGNKCDMEEKRVVSKEEGEAL----ADEY 138 (167)
T ss_pred HhCCCCEEEEEEECcCHH-HH-HhHH-HHHHHHHHh------CCCCCcEEEEEECcccccccCCCHHHHHHH----HHHc
Confidence 346799999999998742 11 1122 222223221 11346899999999998533 222233333 2334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||+++.|++++++.|.+.
T Consensus 139 ~~----~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 139 GI----KFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988754
No 127
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.70 E-value=1.1e-07 Score=93.74 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... .+....++..+..... ....+.|+|+|+||+|+..... .......+ .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~---~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----~~~~ 136 (190)
T cd04144 67 WIREGEGFILVYSITSRST---FERVERFREQIQRVKD---ESAADVPIMIVGNKCDKVYEREVSTEEGAAL----ARRL 136 (190)
T ss_pred HHHhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhc---ccCCCCCEEEEEEChhccccCccCHHHHHHH----HHHh
Confidence 3457899999999977431 1112223333332210 0013468999999999975332 22222333 2334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 137 ~~----~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 137 GC----EFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred CC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988754
No 128
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.70 E-value=2e-07 Score=92.60 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... ......++..+.... .....|+|+|+||+|+.+...... .....+......+
T Consensus 67 ~~~~ad~vilv~d~~~~~s---~~~~~~~~~~i~~~~-----~~~~~piilv~NK~Dl~~~~~~v~-~~~~~~~~~~~~~ 137 (198)
T cd04147 67 SIQNSDAFALVYAVDDPES---FEEVERLREEILEVK-----EDKFVPIVVVGNKADSLEEERQVP-AKDALSTVELDWN 137 (198)
T ss_pred HhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhc-----CCCCCcEEEEEEcccccccccccc-HHHHHHHHHhhcC
Confidence 4467999999999987421 111122222222211 113468999999999976422111 1111111111222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
..++.+||++|.|+++|++.|.+.+
T Consensus 138 ----~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 138 ----CGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred ----CcEEEecCCCCCCHHHHHHHHHHHh
Confidence 2378899999999999999998653
No 129
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.70 E-value=1.8e-07 Score=89.10 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+.. +...+.+.. ...+.|+++|+||+|+..... .......+ .+..+
T Consensus 70 ~~~~d~~ilv~d~~~~~s-~-~~~~~-~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 137 (164)
T cd04175 70 MKNGQGFVLVYSITAQST-F-NDLQD-LREQILRVK-----DTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWG 137 (164)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHHH-HHHHHHHhc-----CCCCCCEEEEEECCcchhccEEcHHHHHHH----HHHhC
Confidence 456889999999876321 1 11222 222222210 113468999999999975432 22222333 23344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 138 C----AFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred C----EEEEeeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.69 E-value=1.9e-07 Score=92.42 Aligned_cols=87 Identities=22% Similarity=0.124 Sum_probs=49.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+. ..+. ...++..+.. .+.|+++|+||+|+..... ...+..+.. ++...+
T Consensus 85 ~~~~~d~~ilV~d~~~~--~~~~--~~~~~~~~~~---------~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~-~~~~~~ 149 (194)
T cd01891 85 VLSMVDGVLLLVDASEG--PMPQ--TRFVLKKALE---------LGLKPIVVINKIDRPDARP-EEVVDEVFD-LFIELG 149 (194)
T ss_pred HHHhcCEEEEEEECCCC--ccHH--HHHHHHHHHH---------cCCCEEEEEECCCCCCCCH-HHHHHHHHH-HHHHhC
Confidence 34578999999999873 2221 2223332222 3458999999999975322 112233222 222221
Q ss_pred CC--C-CCeEEEEecccCcchhhHH
Q 005977 367 AP--K-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 367 ~~--~-~~~V~~VSAkkg~Gv~eLl 388 (666)
.. . -..++++||++|.|+.++.
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred CccccCccCEEEeehhccccccccc
Confidence 10 0 1148999999998875543
No 131
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.69 E-value=1.6e-07 Score=90.26 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=57.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---------HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
....+|++|+|+|+.+.. ++ ..+...++..+... ..+.|++||+||+|+.+.......+ ..-
T Consensus 66 ~~~~~d~~ilv~d~~~~~-s~-~~~~~~~~~~i~~~-------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 136 (174)
T smart00174 66 SYPDTDVFLICFSVDSPA-SF-ENVKEKWYPEVKHF-------CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQ 136 (174)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHhh-------CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHH
Confidence 456799999999998742 11 11112223333321 1357999999999997532210000 011
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+.+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 137 ~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 137 GEALAKRIG---AVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHcC---CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 122334444 2348899999999999999988754
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.69 E-value=2.2e-08 Score=104.73 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=45.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
+.|+++|.||||||||+|+|++.... .+|+.|+||++.+...... ...+.++||||+..+
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~-----~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKIS-----ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEe-----ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 46899999999999999999986533 2478999999865422111 235789999999865
No 133
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.68 E-value=9.4e-08 Score=110.62 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=56.3
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.+.+- . . .+...+.+ .+.|+++|+||+|+..+...... .+.+.+.+|.+
T Consensus 71 ~~aDvvI~VvDat~ler----~-l-~l~~ql~~---------~~~PiIIVlNK~Dl~~~~~i~~d----~~~L~~~lg~p 131 (591)
T TIGR00437 71 EKPDLVVNVVDASNLER----N-L-YLTLQLLE---------LGIPMILALNLVDEAEKKGIRID----EEKLEERLGVP 131 (591)
T ss_pred cCCCEEEEEecCCcchh----h-H-HHHHHHHh---------cCCCEEEEEehhHHHHhCCChhh----HHHHHHHcCCC
Confidence 46899999999987421 1 1 11122222 34689999999999754432111 23344556654
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
++++||++|.|+++|++.|.+.
T Consensus 132 ----vv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 132 ----VVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ----EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999765
No 134
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.68 E-value=5.7e-08 Score=100.95 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=54.9
Q ss_pred hhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 385 ~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.++...+.+......+|+++|.+|||||||+|+|++..... ++..+++|+....+..... ..+.++||||+...
T Consensus 18 ~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~-----v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 18 LELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAA-----TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred HHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-----cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 44555555555667899999999999999999999875433 3567777777665544332 36789999999865
Q ss_pred c
Q 005977 464 H 464 (666)
Q Consensus 464 ~ 464 (666)
.
T Consensus 93 ~ 93 (249)
T cd01853 93 V 93 (249)
T ss_pred h
Confidence 3
No 135
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.68 E-value=1.6e-07 Score=94.01 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=57.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... .+....+.+.+.... .......|+++|+||+|+..... ....+..|.+ +..
T Consensus 77 ~~~~ad~iilv~D~~~~~S---~~~~~~~~~~i~~~~---~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~ 147 (198)
T cd04142 77 GLRNSRAFILVYDICSPDS---FHYVKLLRQQILETR---PAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSW 147 (198)
T ss_pred hhccCCEEEEEEECCCHHH---HHHHHHHHHHHHHhc---ccCCCCCCEEEEEECccccccccccHHHHHHHHH---Hhc
Confidence 4578999999999987421 111222223222210 00013469999999999965432 2222333322 123
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.+...
T Consensus 148 ~~----~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 148 KC----GYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred CC----cEEEecCCCCCCHHHHHHHHHHH
Confidence 32 38999999999999999988753
No 136
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.67 E-value=4.6e-07 Score=86.47 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=55.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+....... ....+.+.+...
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~l~~~~------~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~~~~ 143 (169)
T cd04114 76 YYRSANALILTYDITCEES--FRCL-PEWLREIEQYA------NNKVITILVGNKIDLAERREVS---QQRAEEFSDAQD 143 (169)
T ss_pred HhcCCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhC------CCCCeEEEEEECcccccccccC---HHHHHHHHHHcC
Confidence 3456899999999986321 1111 12223333211 1346889999999997543311 112222222222
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..++.+||++|.|++++++.|.+.
T Consensus 144 ----~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 144 ----MYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 238899999999999999998753
No 137
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.66 E-value=9.5e-08 Score=92.20 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.++. ++ .++...+.+.++... ....|++||+||+||... .....+..+++. ...+.
T Consensus 64 ~~~ad~ii~V~D~s~~~-s~-~~~~~~~~~~~~~~~------~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~--~~~~~ 132 (169)
T cd04158 64 YLNTQAVVFVVDSSHRD-RV-SEAHSELAKLLTEKE------LRDALLLIFANKQDVAGA-LSVEEMTELLSL--HKLCC 132 (169)
T ss_pred hccCCEEEEEEeCCcHH-HH-HHHHHHHHHHhcChh------hCCCCEEEEEeCcCcccC-CCHHHHHHHhCC--ccccC
Confidence 45689999999998743 11 222333333322110 033689999999999643 222334443211 01111
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
...-.++.+||++|.|++++++.|.+.+.
T Consensus 133 ~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 133 GRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 01124778899999999999999976544
No 138
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.66 E-value=3.2e-07 Score=107.16 Aligned_cols=171 Identities=16% Similarity=0.088 Sum_probs=90.9
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHH--HHhhhcC-cc-----eeecce--------ecceecceeccccccc
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAR--EAQKEKG-EV-----TVCARC--------HSLRNYGQVKNEVAEN 267 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~--~~~~~~~-~~-----~~CqRC--------~rLr~ygkv~~~~~q~ 267 (666)
.++||.||+||||| ++|....-++.+++.... ++...+. .. .+..+. +....+..+.....++
T Consensus 27 i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~ 106 (632)
T PRK05506 27 FITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKF 106 (632)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceE
Confidence 46799999996555 999988766665432211 1111110 01 111111 2222233333333333
Q ss_pred cc---Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCC
Q 005977 268 LI---PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 268 ~i---P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
.+ |++. |...|.. ++..+|++++|||+.+. ..+.. ...+..+... ..+++|+|+||+|
T Consensus 107 ~liDtPG~~~f~~~~~~------~~~~aD~~llVvda~~g--~~~~t--~e~~~~~~~~--------~~~~iivvvNK~D 168 (632)
T PRK05506 107 IVADTPGHEQYTRNMVT------GASTADLAIILVDARKG--VLTQT--RRHSFIASLL--------GIRHVVLAVNKMD 168 (632)
T ss_pred EEEECCChHHHHHHHHH------HHHhCCEEEEEEECCCC--ccccC--HHHHHHHHHh--------CCCeEEEEEEecc
Confidence 33 7764 4433433 45679999999999873 22221 1112222221 2357899999999
Q ss_pred CCCCCCC-hHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchh------------hHHHHHHhh
Q 005977 344 LLPSQVS-PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVR------------NLLAFIKEL 394 (666)
Q Consensus 344 LLpk~~~-~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~------------eLl~~I~~~ 394 (666)
++..... ...+..-+..+.+..++. ...++++||++|.|+. .|++.|...
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~ 231 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLH-DVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV 231 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCC-CccEEEEecccCCCccccccCCCcccHhHHHHHHhcC
Confidence 9853221 111222223333455532 2348999999999987 366776654
No 139
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.66 E-value=1.8e-07 Score=88.43 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+ ..+...+... . .+.|+++|+||+|+..... .......+ .+..+
T Consensus 72 ~~~~~~~v~v~d~~~~~s-~-~~l-~~~~~~~~~~------~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 137 (162)
T cd04106 72 YRGAQACILVFSTTDRES-F-EAI-ESWKEKVEAE------C-GDIPMVLVQTKIDLLDQAVITNEEAEAL----AKRLQ 137 (162)
T ss_pred hcCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEEChhcccccCCCHHHHHHH----HHHcC
Confidence 457899999999987431 1 111 1122222211 1 3468999999999986433 22223333 34455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+ ++.+||+++.|+++|++.|.+
T Consensus 138 ~~----~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 138 LP----LFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred Ce----EEEEECCCCCCHHHHHHHHHH
Confidence 43 899999999999999999875
No 140
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.66 E-value=3.3e-08 Score=98.24 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=46.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
+|+++|.||||||||+|+|++....... ...+|+|+++......+ +..+.+|||||+.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~----~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK----LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc----cCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 6899999999999999999987654322 23578888766544333 34688999999997653
No 141
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.65 E-value=4.9e-07 Score=85.71 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+.... ..+. .++..+... ...+.|+++|+||+|+..... ....+..+ .+..+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~--~~~~-~~~~~~~~~------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~~ 136 (161)
T cd04113 70 YRGAAGALLVYDITNRTSF--EALP-TWLSDARAL------ASPNIVVILVGNKSDLADQREVTFLEASRF----AQENG 136 (161)
T ss_pred hcCCCEEEEEEECCCHHHH--HHHH-HHHHHHHHh------CCCCCeEEEEEEchhcchhccCCHHHHHHH----HHHcC
Confidence 4578999999999884311 1122 222222221 113568999999999975432 22333333 23444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. .++.+||+++.|++++++.+.+
T Consensus 137 ~----~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 L----LFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred C----EEEEEECCCCCCHHHHHHHHHH
Confidence 3 3899999999999999998864
No 142
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.65 E-value=5.7e-07 Score=89.43 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~ 365 (666)
...+++.+++|+|+.++.. + ..+ ..+...+..... .......|++||+||+||.+ .......+..|. +..
T Consensus 70 ~~~~a~~~ilv~D~t~~~s-~-~~~-~~~~~~i~~~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~~~ 140 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPST-F-EAV-LKWKADLDSKVT--LPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC----KEN 140 (201)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhhc--ccCCCCCcEEEEEECCCcccccccCHHHHHHHH----HHc
Confidence 3457899999999987431 1 111 112222222100 00113468999999999974 333334444443 444
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+ +..++.+||++|.|++++++.|.+.
T Consensus 141 ~---~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 141 G---FIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred C---CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 4 3358999999999999999988754
No 143
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.65 E-value=3.2e-07 Score=88.85 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=55.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+++|+|+.+.. .......++..+.+.. .....|+|+|+||+|+........ .....+.+.++.
T Consensus 70 ~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~-----~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~ 138 (180)
T cd04137 70 SIGIHGYILVYSVTSRK---SFEVVKVIYDKILDML-----GKESVPIVLVGNKSDLHTQRQVST---EEGKELAESWGA 138 (180)
T ss_pred HhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhc-----CCCCCCEEEEEEchhhhhcCccCH---HHHHHHHHHcCC
Confidence 45688999999998732 1122222222222210 113458999999999975332111 111222334442
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||+++.|+.+++..|.+.
T Consensus 139 ----~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 139 ----AFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred ----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 38999999999999999998764
No 144
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.65 E-value=9.4e-08 Score=87.82 Aligned_cols=91 Identities=24% Similarity=0.149 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+... +..+.........
T Consensus 72 ~~~~~d~il~v~~~~~~~~~~~----~~~~~~~~~---------~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~ 134 (163)
T cd00880 72 VLERADLILFVVDADLRADEEE----EKLLELLRE---------RGKPVLLVLNKIDLLPEEE----EEELLELRLLILL 134 (163)
T ss_pred HHHhCCEEEEEEeCCCCCCHHH----HHHHHHHHh---------cCCeEEEEEEccccCChhh----HHHHHHHHHhhcc
Confidence 3457899999999998653221 111222221 4568999999999987654 3333211111111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
......++.+||+++.|+++|++.|.+.
T Consensus 135 ~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 135 LLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 1113458999999999999999998753
No 145
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.65 E-value=5.1e-07 Score=86.41 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=56.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... ...+..++..... ......|+++|+||+|+..... .......|. +..
T Consensus 71 ~~~~~~~~ilv~d~~~~~s------~~~~~~~~~~~~~---~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~----~~~ 137 (166)
T cd04122 71 YYRGAAGALMVYDITRRST------YNHLSSWLTDARN---LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA----DEN 137 (166)
T ss_pred HhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHH---hCCCCCeEEEEEECcccccccCcCHHHHHHHH----HHc
Confidence 3457999999999988431 1122233322110 1113468999999999975432 333344443 333
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
+. .++.+||++|.|+++++..+..
T Consensus 138 ~~----~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 138 GL----LFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHH
Confidence 43 3889999999999999877764
No 146
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.64 E-value=1.2e-07 Score=90.09 Aligned_cols=91 Identities=24% Similarity=0.230 Sum_probs=56.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|+|+.+... + ..+ ..+...+.+.. ...+.|+++|+||+|+.+... ...... .+.+..+
T Consensus 70 ~~~ad~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~~-----~~~~~piviv~nK~Dl~~~~~~~~~~~~----~~~~~~~ 137 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQT-F-QDI-KPMRDQIVRVK-----GYEKVPIILVGNKVDLESEREVSSAEGR----ALAEEWG 137 (163)
T ss_pred HhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCCEEEEEECccchhcCccCHHHHH----HHHHHhC
Confidence 456899999999988431 1 112 12222232210 113568999999999975432 111122 2233344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 138 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 138 C----PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred C----EEEEecCCCCCCHHHHHHHHHHh
Confidence 3 38999999999999999988754
No 147
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.64 E-value=2.4e-07 Score=107.12 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcch-HHHHHHHHh
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD-FDRVIATRL 282 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~d-f~~~L~~~l 282 (666)
.+.+|.+|+|||+| +++.+........ .+..+.+..+...+ . .++... -.-+.+|++. |.+.|..
T Consensus 3 I~iiG~~d~GKTTLi~aLtg~~~d~~~e-------E~~rGiTid~~~~~-~-~~~~~~--v~~iDtPGhe~f~~~~~~-- 69 (581)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIAADRLPE-------EKKRGMTIDLGFAY-F-PLPDYR--LGFIDVPGHEKFISNAIA-- 69 (581)
T ss_pred EEEECCCCCCHHHHHHHHhCccCcCChh-------HhcCCceEEeEEEE-E-EeCCEE--EEEEECCCHHHHHHHHHh--
Confidence 45689999996555 9998754221110 01112222221110 0 111100 0012247764 4333322
Q ss_pred cCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 005977 283 MKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA 362 (666)
Q Consensus 283 ~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~ 362 (666)
....+|++++|||+.+ |..+.. .+. +..+... +.+++|+|+||+|+++... ...+...++.+.
T Consensus 70 ----g~~~aD~aILVVDa~~--G~~~qT-~eh-l~il~~l--------gi~~iIVVlNK~Dlv~~~~-~~~~~~ei~~~l 132 (581)
T TIGR00475 70 ----GGGGIDAALLVVDADE--GVMTQT-GEH-LAVLDLL--------GIPHTIVVITKADRVNEEE-IKRTEMFMKQIL 132 (581)
T ss_pred ----hhccCCEEEEEEECCC--CCcHHH-HHH-HHHHHHc--------CCCeEEEEEECCCCCCHHH-HHHHHHHHHHHH
Confidence 4567999999999987 333332 222 2233321 2233999999999986432 111233333444
Q ss_pred HhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 363 KAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 363 k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+..++.....++++||++|.|+++|.+.|..++
T Consensus 133 ~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 133 NSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 443321123499999999999999998887653
No 148
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.64 E-value=1.3e-07 Score=91.67 Aligned_cols=89 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-PTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.++. .. ..+..++.... ...+.|+++|+||+|+.+.... ......+ .+.++
T Consensus 75 ~~~~d~~llv~d~~~~~-----s~-~~~~~~~~~~~-----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (169)
T cd01892 75 LAACDVACLVYDSSDPK-----SF-SYCAEVYKKYF-----MLGEIPCLFVAAKADLDEQQQRYEVQPDEF----CRKLG 139 (169)
T ss_pred hhcCCEEEEEEeCCCHH-----HH-HHHHHHHHHhc-----cCCCCeEEEEEEcccccccccccccCHHHH----HHHcC
Confidence 46799999999997742 11 12222222210 0134699999999999754321 1112232 23444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. ..++.+||++|.|+++|++.|.+.
T Consensus 140 ~---~~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 140 L---PPPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred C---CCCEEEEeccCccHHHHHHHHHHH
Confidence 2 236899999999999999998764
No 149
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.64 E-value=3.8e-07 Score=86.15 Aligned_cols=154 Identities=18% Similarity=0.094 Sum_probs=82.1
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHHhcC
Q 005977 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMK 284 (666)
Q Consensus 206 a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~r 284 (666)
+++|.||+|||+| +++.+.+... .....+...+.+. |..... .-+.+|+....+.+...
T Consensus 3 ~iiG~~~~GKssli~~~~~~~~~~--------------~~~t~~~~~~~~~-~~~~~~--~i~D~~G~~~~~~~~~~--- 62 (158)
T cd00878 3 LILGLDGAGKTTILYKLKLGEVVT--------------TIPTIGFNVETVE-YKNVSF--TVWDVGGQDKIRPLWKH--- 62 (158)
T ss_pred EEEcCCCCCHHHHHHHHhcCCCCC--------------CCCCcCcceEEEE-ECCEEE--EEEECCCChhhHHHHHH---
Confidence 4689999996555 9888776210 1122222222222 111110 00123665433333332
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 005977 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA 364 (666)
Q Consensus 285 P~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.++.. + ......+...+... .....|+++|+||+|+..... ...+..++....
T Consensus 63 --~~~~~~~~i~v~D~~~~~~-~-~~~~~~~~~~~~~~------~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~-- 129 (158)
T cd00878 63 --YYENTNGIIFVVDSSDRER-I-EEAKEELHKLLNEE------ELKGVPLLIFANKQDLPGALS-VSELIEKLGLEK-- 129 (158)
T ss_pred --HhccCCEEEEEEECCCHHH-H-HHHHHHHHHHHhCc------ccCCCcEEEEeeccCCccccC-HHHHHHhhChhh--
Confidence 3457899999999987431 1 11112222211110 013468999999999986542 222333221110
Q ss_pred CCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.. .....++.+||++|.|++++++.|..
T Consensus 130 ~~-~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 130 IL-GRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cc-CCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 11 11335899999999999999998864
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.63 E-value=1.2e-07 Score=106.08 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=81.3
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc---cccCcch---
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE---NLIPDFD--- 273 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q---~~iP~~d--- 273 (666)
+|+..+++|.||||| +++|++.+...++++..+.+ ++....+.+...... +..|+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt----------------Trd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT----------------TRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc----------------EEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 688889999999995 55599998764443322211 221111111111111 1125432
Q ss_pred -HHHHH-HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 274 -FDRVI-ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 274 -f~~~L-~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.... ...... ....+|++++|+|+.++.. . . ..++..+.. ..+|+|+|+||+|+... .
T Consensus 266 ~~ie~~gi~~~~~--~~~~aD~il~V~D~s~~~s--~-~--~~~l~~~~~---------~~~piIlV~NK~Dl~~~-~-- 326 (442)
T TIGR00450 266 DFVERLGIEKSFK--AIKQADLVIYVLDASQPLT--K-D--DFLIIDLNK---------SKKPFILVLNKIDLKIN-S-- 326 (442)
T ss_pred hHHHHHHHHHHHH--HHhhCCEEEEEEECCCCCC--h-h--HHHHHHHhh---------CCCCEEEEEECccCCCc-c--
Confidence 11111 111222 4578999999999987532 1 1 112232221 34689999999999644 1
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+ .+..+.+ ++.+||++ .|++++++.|.+.
T Consensus 327 --~~~~----~~~~~~~----~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 327 --LEFF----VSSKVLN----SSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred --hhhh----hhhcCCc----eEEEEEec-CCHHHHHHHHHHH
Confidence 2222 1233332 78899998 5777777776653
No 151
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.63 E-value=1.9e-07 Score=87.56 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.++.. . ... ..++..+.... .....|+++|+||+|+.... ... ..+..+.+..
T Consensus 67 ~~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~~-----~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~ 134 (160)
T cd00876 67 YIRQGDGFILVYSITDRES-F-EEI-KGYREQILRVK-----DDEDIPIVLVGNKCDLENERQVSK----EEGKALAKEW 134 (160)
T ss_pred HHhcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCcEEEEEECCcccccceecH----HHHHHHHHHc
Confidence 3456899999999877431 1 111 22222222210 01357999999999998632 222 2233333444
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||+++.|+++|++.|.+.
T Consensus 135 ~~----~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 135 GC----PFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CC----cEEEeccCCCCCHHHHHHHHHhh
Confidence 43 38999999999999999998753
No 152
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.62 E-value=7.4e-07 Score=87.38 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=57.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+.. ++ ..+. .++..+... .....|+++|+||+|+..... .......| .+..
T Consensus 69 ~~~~~d~iilv~d~~~~~-s~-~~i~-~~~~~i~~~------~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~ 135 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQE-SF-ENLK-FWINEINRY------ARENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSL 135 (188)
T ss_pred HccCCCEEEEEEECcCHH-HH-HHHH-HHHHHHHHh------CCCCCeEEEEEECCCCcccccCCHHHHHHH----HHHc
Confidence 346799999999998743 11 1111 122223221 113468999999999984432 22233333 2334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||+++.|+++++..|.+.
T Consensus 136 ~~----~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 136 NI----PFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999888754
No 153
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=99.87 Aligned_cols=79 Identities=30% Similarity=0.312 Sum_probs=54.6
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcccccccChhhHH
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLMSMRLNRDEQK 476 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~~~~L~~~e~~ 476 (666)
--++.|.|+||||||||+++|.+.. ..+.++|.||+.+.--.+..+ ..+.+|||||++...+.. .++-|..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak------pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E--rN~IE~q 239 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK------PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE--RNEIERQ 239 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC------CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH--hcHHHHH
Confidence 3478899999999999999998753 344689999998743221122 278899999999766543 2444554
Q ss_pred HHHhhhhc
Q 005977 477 MVEIRKEL 484 (666)
Q Consensus 477 ~~~~~kel 484 (666)
.+...+-+
T Consensus 240 Ai~AL~hl 247 (346)
T COG1084 240 AILALRHL 247 (346)
T ss_pred HHHHHHHh
Confidence 44444433
No 154
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.61 E-value=4.1e-07 Score=90.52 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|+|+.+... + ..+ ..+++.+... . ...|+++|+||+|+.+... ....... +.+..+
T Consensus 76 ~~~a~~iilv~D~~~~~s-~-~~~-~~~~~~i~~~------~-~~~piivVgNK~Dl~~~~~~~~~~~~~----~~~~~~ 141 (199)
T cd04110 76 YRGTHGVIVVYDVTNGES-F-VNV-KRWLQEIEQN------C-DDVCKVLVGNKNDDPERKVVETEDAYK----FAGQMG 141 (199)
T ss_pred hCCCcEEEEEEECCCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEECcccccccccCHHHHHH----HHHHcC
Confidence 456899999999988431 1 111 1222333221 1 3468999999999976433 2222222 233444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|...
T Consensus 142 ~----~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 142 I----SLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred C----EEEEEECCCCcCHHHHHHHHHHH
Confidence 3 38999999999999999998754
No 155
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.61 E-value=5.4e-07 Score=87.78 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=54.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++|+|+|+.++.. ...+.+.+...+... . ....|++||+||+||..... ...+...+.. .....
T Consensus 78 ~~~ad~ii~v~D~t~~~s--~~~~~~~l~~~~~~~----~--~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~-~~~~~- 146 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDR--IDEAREELHRMLNED----E--LRDAVILVFANKQDLPDAMK-AAEITEKLGL-HSIRD- 146 (175)
T ss_pred hCCCCEEEEEEECCCHHH--HHHHHHHHHHHhhCH----h--hcCCcEEEEEeCcCcccCCC-HHHHHHHhCc-cccCC-
Confidence 467999999999987431 112222222222211 0 03468999999999864322 1122221100 00001
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.-.++.+||++|.|++++++.|.+.
T Consensus 147 -~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 147 -RNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred -CcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 11236689999999999999998764
No 156
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.60 E-value=1.6e-07 Score=92.30 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=54.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++|+|+|+.+... + ......+.+.+... .. ..+|++||+||.|+..... ...+.. .++.
T Consensus 82 ~~~ad~iI~v~D~t~~~s-~-~~~~~~l~~~~~~~----~~--~~~piilv~NK~Dl~~~~~-~~~i~~-------~l~~ 145 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRER-I-GDAREELERMLSED----EL--RDAVLLVFANKQDLPNAMS-TTEVTE-------KLGL 145 (182)
T ss_pred hcCCCEEEEEEeCCCHHH-H-HHHHHHHHHHHhCH----hh--cCCCEEEEEeCCCCCCCCC-HHHHHH-------HhCC
Confidence 457999999999987431 1 12222232222211 11 3468999999999854322 121211 2222
Q ss_pred CCC--C--eEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKL--N--GVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~--~--~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
..+ . .++.+||++|.|++++++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 146 HSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 111 1 255689999999999999987653
No 157
>PTZ00369 Ras-like protein; Provisional
Probab=98.59 E-value=2.7e-07 Score=90.84 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=56.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+. .+...+.+.. ...+.|+++|+||+|+..... .......| .+..+
T Consensus 74 ~~~~d~iilv~D~s~~~s-~-~~~~-~~~~~i~~~~-----~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~----~~~~~ 141 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSS-F-EEIA-SFREQILRVK-----DKDRVPMILVGNKCDLDSERQVSTGEGQEL----AKSFG 141 (189)
T ss_pred hhcCCEEEEEEECCCHHH-H-HHHH-HHHHHHHHhc-----CCCCCCEEEEEECcccccccccCHHHHHHH----HHHhC
Confidence 457899999999988531 1 1122 2222222211 113568999999999864322 22223333 23334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 142 ~----~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 142 I----PFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred C----EEEEeeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999888654
No 158
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.58 E-value=1.1e-07 Score=104.80 Aligned_cols=60 Identities=30% Similarity=0.232 Sum_probs=46.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~ 465 (666)
+|.+||.||||||||||+|++.. +.+++.|+||+..+......+ ..+.++||||+..+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS 222 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc
Confidence 79999999999999999998653 235799999998765432233 2589999999986543
No 159
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.57 E-value=1.3e-06 Score=83.73 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|.+++|.|+.+.... ..+...+ ..+..... .......|+++|+||+|+..+......+..|. +..+
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~-~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 144 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSF--QNLSNWK-KEFIYYAD--VKEPESFPFVVLGNKNDIPERQVSTEEAQAWC----RENG 144 (170)
T ss_pred HhcCCCEEEEEEECCCHHHH--HhHHHHH-HHHHHhcc--cccCCCCcEEEEEECccccccccCHHHHHHHH----HHCC
Confidence 34568999999998874311 1122222 22211100 00013468999999999975554444455554 3344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...++.+||++|.|+.++++.+.+
T Consensus 145 ---~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 145 ---DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHh
Confidence 234899999999999999988864
No 160
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.57 E-value=1.6e-07 Score=89.54 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH-------H-HHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR-------L-DRWVR 359 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~-------L-~~wl~ 359 (666)
...+|++++|+|+.+... + ......++..+... . ...|+++|+||+|+......... + ..-..
T Consensus 69 ~~~~~~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~------~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 139 (171)
T cd00157 69 YPNTDVFLICFSVDSPSS-F-ENVKTKWIPEIRHY------C-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGE 139 (171)
T ss_pred cCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHH
Confidence 457899999999987421 1 12222233333321 1 34789999999999865431100 0 11112
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+....+ ...++.+||++|.|+++|++.|.+
T Consensus 140 ~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 140 KLAKEIG---AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHhC---CeEEEEeecCCCCCHHHHHHHHhh
Confidence 2223334 235899999999999999998864
No 161
>PLN03118 Rab family protein; Provisional
Probab=98.56 E-value=4.1e-07 Score=91.24 Aligned_cols=161 Identities=16% Similarity=0.042 Sum_probs=84.6
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHH
Q 005977 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIAT 280 (666)
Q Consensus 202 G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~ 280 (666)
.|-.++||++|+|||+| +++...+..... +. -.....+.... ..+.... -.-+.+|+..-...+..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t-------~~~~~~~~~~~---~~~~~~~-l~l~Dt~G~~~~~~~~~ 80 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PT-------IGVDFKIKQLT---VGGKRLK-LTIWDTAGQERFRTLTS 80 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CC-------ceeEEEEEEEE---ECCEEEE-EEEEECCCchhhHHHHH
Confidence 46678899999997666 888776532110 00 00011111111 1111000 00012355443333333
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHH
Q 005977 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVR 359 (666)
Q Consensus 281 ~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~ 359 (666)
. ....+|.+|+|+|+.+... + ..+...+...+.... .....|+++|+||+|+..... .......
T Consensus 81 ~-----~~~~~d~~vlv~D~~~~~s-f-~~~~~~~~~~~~~~~-----~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~--- 145 (211)
T PLN03118 81 S-----YYRNAQGIILVYDVTRRET-F-TNLSDVWGKEVELYS-----TNQDCVKMLVGNKVDRESERDVSREEGMA--- 145 (211)
T ss_pred H-----HHhcCCEEEEEEECCCHHH-H-HHHHHHHHHHHHHhc-----CCCCCCEEEEEECccccccCccCHHHHHH---
Confidence 3 3457899999999987431 1 112222222222110 112357899999999975433 2122222
Q ss_pred HHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 360 HRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 360 ~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+....+. .++.+||+++.|++++++.|...+
T Consensus 146 -~~~~~~~----~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 146 -LAKEHGC----LFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -HHHHcCC----EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233443 388999999999999999998654
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.56 E-value=4e-07 Score=91.23 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.++. ..+. ... .+..+... ..+|+|+|+||+|+.........++ .++.+.....
T Consensus 103 ~~~~~D~~llVvd~~~~~-~~~~-t~~-~l~~~~~~--------~~~~iiivvNK~Dl~~~~~~~~~~~-~i~~~~~~~~ 170 (203)
T cd01888 103 GAAVMDGALLLIAANEPC-PQPQ-TSE-HLAALEIM--------GLKHIIIVQNKIDLVKEEQALENYE-QIKKFVKGTI 170 (203)
T ss_pred hhhcCCEEEEEEECCCCC-CCcc-hHH-HHHHHHHc--------CCCcEEEEEEchhccCHHHHHHHHH-HHHHHHhccc
Confidence 556789999999998742 1111 122 22323221 3357899999999975432111112 1222222211
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.. ...++++||++|.|+++|++.|.+.++++
T Consensus 171 ~~-~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 171 AE-NAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred cC-CCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 10 22489999999999999999999877653
No 163
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.55 E-value=1.1e-06 Score=86.65 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHh
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV--SPTRLDRWVRHRAKA 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~--~~~~L~~wl~~~~k~ 364 (666)
...++|++++|+|+.+... + ..+. ..+..+.+. .....| |+|+||+||..... ....+....+.+.+.
T Consensus 69 ~~~~a~~iilv~D~t~~~s-~-~~i~-~~~~~~~~~------~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~ 138 (182)
T cd04128 69 VCNDAVAILFMFDLTRKST-L-NSIK-EWYRQARGF------NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA 138 (182)
T ss_pred HCcCCCEEEEEEECcCHHH-H-HHHH-HHHHHHHHh------CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH
Confidence 4568999999999987531 1 1111 222323221 112345 78999999964211 111123333444455
Q ss_pred CCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+. .++.+||++|.|+++|++.|.+.
T Consensus 139 ~~~----~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 139 MKA----PLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred cCC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 553 38999999999999999988754
No 164
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.55 E-value=9.2e-07 Score=84.82 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.+.. + .......+...+.... ....|+++|+||+|+..... ..... +.++.
T Consensus 79 ~~~~~~ii~v~D~~~~~-~-~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~----~~~i~----~~l~~ 142 (173)
T cd04155 79 FENTDCLIYVIDSADKK-R-LEEAGAELVELLEEEK------LAGVPVLVFANKQDLATAAP----AEEIA----EALNL 142 (173)
T ss_pred hcCCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhChh------hcCCCEEEEEECCCCccCCC----HHHHH----HHcCC
Confidence 45689999999998732 1 1112222222222110 13468999999999975433 22222 12222
Q ss_pred CCC----CeEEEEecccCcchhhHHHHHHh
Q 005977 368 PKL----NGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~----~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
..+ -.++.+||++|.|++++++.|.+
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 143 HDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 111 13789999999999999998863
No 165
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.54 E-value=5.3e-07 Score=90.93 Aligned_cols=92 Identities=25% Similarity=0.319 Sum_probs=56.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.++. ++ ..+..++..... .......|++||.||+|+..... .......+ .+..
T Consensus 72 ~~~~~d~iilv~D~~~~~-Sf-----~~l~~~~~~i~~--~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~ 139 (211)
T cd04111 72 YYRNSVGVLLVFDITNRE-SF-----EHVHDWLEEARS--HIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDL 139 (211)
T ss_pred HhcCCcEEEEEEECCCHH-HH-----HHHHHHHHHHHH--hcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHh
Confidence 345789999999998743 11 112222222110 00113457899999999976432 22333333 3344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 140 ~~----~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 140 GM----KYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38899999999999999998764
No 166
>CHL00071 tufA elongation factor Tu
Probab=98.54 E-value=4.4e-07 Score=100.68 Aligned_cols=153 Identities=17% Similarity=0.110 Sum_probs=80.6
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHH-------HHHHHhhhcCcceeecc-eecceecceecccccccc---cC
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKK-------KAREAQKEKGEVTVCAR-CHSLRNYGQVKNEVAENL---IP 270 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~-------~a~~~~~~~~~~~~CqR-C~rLr~ygkv~~~~~q~~---iP 270 (666)
...+++|++|+|||+| ++|.+..-.+..++. +.. .+++.+.+..+.. ++.. ...++. .|
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~-~e~~rg~T~~~~~~~~~~--------~~~~~~~iDtP 83 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAP-EEKARGITINTAHVEYET--------ENRHYAHVDCP 83 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCCh-hhhcCCEeEEccEEEEcc--------CCeEEEEEECC
Confidence 4567799999996555 999986432211111 111 1111222222211 1111 111222 37
Q ss_pred cch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEeCCCCCCCC
Q 005977 271 DFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPSQ 348 (666)
Q Consensus 271 ~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk~ 348 (666)
++. |...+ .+ ++..+|++++|||+.. |..+. ...++..+.. .+.| +|+|+||+|+++..
T Consensus 84 Gh~~~~~~~----~~--~~~~~D~~ilVvda~~--g~~~q--t~~~~~~~~~---------~g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 84 GHADYVKNM----IT--GAAQMDGAILVVSAAD--GPMPQ--TKEHILLAKQ---------VGVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred ChHHHHHHH----HH--HHHhCCEEEEEEECCC--CCcHH--HHHHHHHHHH---------cCCCEEEEEEEccCCCCHH
Confidence 753 32333 33 5678999999999987 32222 2333444433 2235 77899999998644
Q ss_pred CChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcc
Q 005977 349 VSPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLG 383 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~G 383 (666)
...+.+..-++.+.+..+++. ...++++||.+|++
T Consensus 145 ~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 145 ELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 322233333444445555321 23489999999874
No 167
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.54 E-value=8.7e-07 Score=85.10 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH---------HHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR---------LDRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~---------L~~w 357 (666)
....+|++++|+|+.+... + ..+...+...+... ..+.|+++|+||+|+.+....... -...
T Consensus 68 ~~~~~~~~ilv~~~~~~~s-~-~~~~~~~~~~l~~~-------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (174)
T cd04135 68 SYPMTDVFLICFSVVNPAS-F-QNVKEEWVPELKEY-------APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQ 138 (174)
T ss_pred cCCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh-------CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHH
Confidence 4567899999999987431 1 12222333444332 145689999999999654211000 0112
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+.+.+..+ ...++.+||++|.|++++++.+..
T Consensus 139 ~~~~~~~~~---~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 139 GQKLAKEIG---AHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHcC---CCEEEEecCCcCCCHHHHHHHHHH
Confidence 222334444 234889999999999999998865
No 168
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.54 E-value=1.1e-06 Score=85.10 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
...++|++++|+|+.+... + ..+ ..++..+.... ...+.|+++|+||+|+.... ........|. +..
T Consensus 83 ~~~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~----~~~ 150 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQS-F-LNV-RNWMSQLQTHA-----YCENPDIVLCGNKADLEDQRQVSEEQAKALA----DKY 150 (180)
T ss_pred HhCCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCcEEEEEeCccchhcCccCHHHHHHHH----HHc
Confidence 3457999999999987421 1 111 12222222210 01356899999999997543 2333344443 344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+ ++.+||++|.|++++++.|.+.
T Consensus 151 ~~~----~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 GIP----YFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHH
Confidence 533 8999999999999999988753
No 169
>PRK09866 hypothetical protein; Provisional
Probab=98.53 E-value=5e-07 Score=103.36 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=68.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
.+.++|+|++|||+....+ ..++.+++.|++. ++..|+++|+||+|+..... ....+..++.......
T Consensus 255 qL~eADvVLFVVDat~~~s----~~DeeIlk~Lkk~-------~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~ 323 (741)
T PRK09866 255 QLARASAVLAVLDYTQLKS----ISDEEVREAILAV-------GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKG 323 (741)
T ss_pred HHhhCCEEEEEEeCCCCCC----hhHHHHHHHHHhc-------CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhc
Confidence 5678999999999987432 2345666666542 12248999999999974332 2455666665443333
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .+..||+|||++|.|++.|++.|.+.
T Consensus 324 ~i-~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 324 CI-TPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CC-CCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33 27789999999999999999999874
No 170
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.53 E-value=1e-06 Score=85.02 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=55.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++|+|+|+.+... + ..+ ..++..+.+. . ...|+++|+||+|+....... ....+ .+..+
T Consensus 70 ~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~-~~~piiiv~nK~Dl~~~~~~~-~~~~~----~~~~~- 133 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVT-Y-KNV-PNWHRDLVRV------C-GNIPIVLCGNKVDIKDRKVKA-KQITF----HRKKN- 133 (166)
T ss_pred hcCCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHh------C-CCCcEEEEEEchhcccccCCH-HHHHH----HHHcC-
Confidence 346899999999987431 1 111 2222333321 1 257999999999997433221 11222 22222
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..++.+||++|.|++++++.|.+.
T Consensus 134 ---~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 134 ---LQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ---CEEEEEeCCCCCChHHHHHHHHHH
Confidence 248999999999999999998764
No 171
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.53 E-value=1.5e-06 Score=84.73 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-----CChHHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-----VSPTRLDRWVRHR 361 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-----~~~~~L~~wl~~~ 361 (666)
....+|++++|+|+.+.. ++ ..+...++..+... . .+.|+|+|+||+||.+.. ........|
T Consensus 69 ~~~~ad~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~---- 135 (187)
T cd04132 69 SYPDVDVLLICYAVDNPT-SL-DNVEDKWFPEVNHF------C-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV---- 135 (187)
T ss_pred hCCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEEeChhhhhCccccCCcCHHHHHHH----
Confidence 346799999999998743 11 11111122222221 1 346899999999997543 112223333
Q ss_pred HHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 362 AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+..+. ..++.+||++|.|+++++..+...
T Consensus 136 ~~~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 136 AKKQGA---FAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred HHHcCC---cEEEEccCCCCCCHHHHHHHHHHH
Confidence 334442 248999999999999999888754
No 172
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.53 E-value=7.6e-07 Score=103.54 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=65.7
Q ss_pred cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 269 IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 269 iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.|++. |.+.|.. ....+|++++|||+.+ |..+.. ...+..+... +.+++|+|+||+|++++
T Consensus 58 tPGhe~fi~~m~~------g~~~~D~~lLVVda~e--g~~~qT--~ehl~il~~l--------gi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 58 VPGHEKFLSNMLA------GVGGIDHALLVVACDD--GVMAQT--REHLAILQLT--------GNPMLTVALTKADRVDE 119 (614)
T ss_pred CCCHHHHHHHHHH------HhhcCCEEEEEEECCC--CCcHHH--HHHHHHHHHc--------CCCeEEEEEECCccCCH
Confidence 48764 4343332 4567999999999987 333332 2223333321 23346899999999864
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 348 QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
..... +..-++.+....+.. ...++++||++|.|+++|++.|.++..
T Consensus 120 ~~~~~-v~~ei~~~l~~~~~~-~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 120 ARIAE-VRRQVKAVLREYGFA-EAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHHH-HHHHHHHHHHhcCCC-CCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 32111 112222233333421 235999999999999999999987644
No 173
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.53 E-value=1.1e-06 Score=85.21 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=56.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... + ..+ ..+++.+.+.. .....|+++|+||+||.+..... ....-.+.+.+..+
T Consensus 69 ~~~~ad~~ilv~d~~~~~s-~-~~~-~~~~~~~~~~~-----~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~ 139 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVAS-L-EHT-RQWLEDALKEN-----DPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQ 139 (170)
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHhc-----CCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcC
Confidence 3467999999999977321 1 111 22222222110 11235689999999997543210 01111122223334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. .++.+||++|.|+++|++.|.+++
T Consensus 140 ~----~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 140 A----EYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred C----eEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 378999999999999999987653
No 174
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.52 E-value=5.4e-07 Score=88.37 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=54.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+...+ ..+.... ...+.|+++|+||+|+.... ....+..++.. ...+.
T Consensus 73 ~~~~d~ii~v~D~~~~~~--~~~~~~~~-~~i~~~~-----~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~--~~~~~ 141 (183)
T cd04152 73 TRCTDGIVFVVDSVDVER--MEEAKTEL-HKITRFS-----ENQGVPVLVLANKQDLPNAL-SVSEVEKLLAL--HELSA 141 (183)
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHH-HHHHhhh-----hcCCCcEEEEEECcCccccC-CHHHHHHHhCc--cccCC
Confidence 457999999999987421 11111111 1121110 11346899999999986432 22223332210 01111
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.....++++||++|.|+++|++.|.+.
T Consensus 142 ~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 142 STPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred CCceEEEEeecccCCCHHHHHHHHHHH
Confidence 011247899999999999999988754
No 175
>PTZ00258 GTP-binding protein; Provisional
Probab=98.52 E-value=2.4e-07 Score=101.84 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEEC
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYDT 457 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l------------------~~~~~liDT 457 (666)
....+|.+||.||||||||+|+|.+.. +.++++||||++...-...+ +..+.++||
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~------~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt 92 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ------VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDI 92 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc------ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence 345689999999999999999997653 23478999998865422212 235899999
Q ss_pred CCCCCCcccccccChhhHHHHHhhhhccceeeEec
Q 005977 458 PGLLHPHLMSMRLNRDEQKMVEIRKELQPRTYRVK 492 (666)
Q Consensus 458 PGi~~~~~~~~~L~~~e~~~~~~~kel~p~t~~lk 492 (666)
||+.........| ..+++..-++.....+.+.
T Consensus 93 pGLv~ga~~g~gL---g~~fL~~Ir~aD~il~VVd 124 (390)
T PTZ00258 93 AGLVKGASEGEGL---GNAFLSHIRAVDGIYHVVR 124 (390)
T ss_pred CCcCcCCcchhHH---HHHHHHHHHHCCEEEEEEe
Confidence 9999654322111 2233333344455555554
No 176
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.52 E-value=1.8e-06 Score=84.01 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... + ..+ ..+...+.+.. .....|+++|+||+|+.... ........|. +..+
T Consensus 71 ~~~~d~~ilv~d~~~~~S-f-~~~-~~~~~~i~~~~-----~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a----~~~~ 138 (172)
T cd04141 71 MRCGEGFIICYSVTDRHS-F-QEA-SEFKKLITRVR-----LTEDIPLVLVGNKVDLESQRQVTTEEGRNLA----REFN 138 (172)
T ss_pred hhcCCEEEEEEECCchhH-H-HHH-HHHHHHHHHhc-----CCCCCCEEEEEEChhhhhcCccCHHHHHHHH----HHhC
Confidence 446899999999988542 1 112 22333343321 11346899999999986432 2223333333 3344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|...
T Consensus 139 ~----~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 139 C----PFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred C----EEEEEecCCCCCHHHHHHHHHHH
Confidence 3 38899999999999999888643
No 177
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.51 E-value=1.6e-06 Score=81.28 Aligned_cols=90 Identities=22% Similarity=0.156 Sum_probs=56.6
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...+.+++|+|...... .....+..++.. ...|+++|+||+|++....... ...-+....+....
T Consensus 80 ~~~~~~~~v~d~~~~~~----~~~~~~~~~l~~---------~~~~vi~v~nK~D~~~~~~~~~-~~~~~~~~l~~~~~- 144 (170)
T cd01876 80 ENLKGVVLLIDSRHGPT----EIDLEMLDWLEE---------LGIPFLVVLTKADKLKKSELAK-ALKEIKKELKLFEI- 144 (170)
T ss_pred hhhhEEEEEEEcCcCCC----HhHHHHHHHHHH---------cCCCEEEEEEchhcCChHHHHH-HHHHHHHHHHhccC-
Confidence 46788999999976431 223334455544 2358999999999986543211 11111111111111
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++++||+++.|++++++.|.++
T Consensus 145 -~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 -DPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -CCceEEEecCCCCCHHHHHHHHHHh
Confidence 2358999999999999999999864
No 178
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.50 E-value=1.2e-06 Score=84.07 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH-------HH--
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD-------RW-- 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~-------~w-- 357 (666)
...++|++++|.|+.+... + ..+...+...++.. ..+.|+++|+||+|+.+.......+. .|
T Consensus 69 ~~~~~d~~i~v~~~~~~~s-~-~~~~~~~~~~~~~~-------~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~ 139 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDS-L-ENIPEKWTPEVKHF-------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred ccCCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh-------CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHH
Confidence 4567899999999986431 1 12222222333321 13568999999999875432111110 01
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+.+.+..+ ...++.+||++|.|+++|++.|...
T Consensus 140 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 140 GRDMANKIG---AFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHcC---CcEEEEeccccCcCHHHHHHHHHHH
Confidence 112223333 2358999999999999999998754
No 179
>PLN03110 Rab GTPase; Provisional
Probab=98.50 E-value=2e-06 Score=86.99 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....++.+|+|+|+.+.. ++ ..+ ..++..+.... ..+.|+++|+||+||..... ...... .+....
T Consensus 81 ~~~~~~~~ilv~d~~~~~-s~-~~~-~~~~~~~~~~~------~~~~piiiv~nK~Dl~~~~~~~~~~~~----~l~~~~ 147 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQ-TF-DNV-QRWLRELRDHA------DSNIVIMMAGNKSDLNHLRSVAEEDGQ----ALAEKE 147 (216)
T ss_pred HhCCCCEEEEEEECCChH-HH-HHH-HHHHHHHHHhC------CCCCeEEEEEEChhcccccCCCHHHHH----HHHHHc
Confidence 345789999999998743 11 111 22223333211 13468999999999964332 112222 233344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 148 ~~----~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 148 GL----SFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988654
No 180
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.50 E-value=1.5e-06 Score=83.46 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=55.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|+|+.+... + .. ...+...+.+.. ...+.|+++|+||+|+.+... .......+ .+..+
T Consensus 70 ~~~~~~~vlv~~~~~~~s-~-~~-~~~~~~~i~~~~-----~~~~~piiiv~nK~D~~~~~~~~~~~~~~~----~~~~~ 137 (168)
T cd04177 70 IKSGQGFLLVYSVTSEAS-L-NE-LGELREQVLRIK-----DSDNVPMVLVGNKADLEDDRQVSREDGVSL----SQQWG 137 (168)
T ss_pred HhhCCEEEEEEECCCHHH-H-HH-HHHHHHHHHHhh-----CCCCCCEEEEEEChhccccCccCHHHHHHH----HHHcC
Confidence 346889999999987431 1 11 112222222211 113568999999999975432 22222222 23333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...++.+||+++.|++++++.|..
T Consensus 138 ---~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 138 ---NVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ---CceEEEeeCCCCCCHHHHHHHHHH
Confidence 123899999999999999998875
No 181
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.49 E-value=1.7e-06 Score=93.09 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHH-HHHhhcCCCccEEEEc
Q 005977 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA-FIKELAGPRGNVWVIG 405 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~-~I~~~l~~~~~v~vvG 405 (666)
.+|+|+|+||+|+..... +.++++ .... ...++++||+.+.++++|.+ .|.+++|++...-+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~---~~~~---~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLR---LKYP---DEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHH---hhCC---CCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 469999999999753322 222222 2222 45699999999999999998 6999998875555544
No 182
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.49 E-value=3.4e-07 Score=94.10 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.|+++|+||+|+++... +..| ... ..++++||++++|+++|++.|.+.+.
T Consensus 177 ~p~iiV~NK~Dl~~~~~----~~~~----~~~------~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 177 IPCLYVYNKIDLISIEE----LDLL----ARQ------PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEECccCCCHHH----HHHH----hcC------CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 58999999999975433 3332 111 13889999999999999999987653
No 183
>PRK12736 elongation factor Tu; Reviewed
Probab=98.48 E-value=1.7e-06 Score=95.55 Aligned_cols=97 Identities=24% Similarity=0.207 Sum_probs=59.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+ |..+. ...++..+.. .+.| +|+|+||+|+++.....+.+...++.+.+..
T Consensus 95 ~~~~~d~~llVvd~~~--g~~~~--t~~~~~~~~~---------~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 95 GAAQMDGAILVVAATD--GPMPQ--TREHILLARQ---------VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHhhCCEEEEEEECCC--CCchh--HHHHHHHHHH---------cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 4567999999999987 33332 2233343333 2235 6789999999854332222333344444444
Q ss_pred CCC-CCCeEEEEecccCc--------chhhHHHHHHhhcC
Q 005977 366 GAP-KLNGVYLVSARKDL--------GVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~-~~~~V~~VSAkkg~--------Gv~eLl~~I~~~l~ 396 (666)
++. ....++++||++|. ++..|++.|.++++
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 531 12358999999983 57788888877655
No 184
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.48 E-value=1.8e-06 Score=88.33 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=58.9
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC--
Q 005977 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA-- 367 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~-- 367 (666)
.+|++++|||+.+.. . ..+..++.++.. .+.|+++|+||+|++++......+..+ +...+..|.
T Consensus 109 ~~D~~llVvda~~g~--~--~~d~~~l~~l~~---------~~ip~ivvvNK~D~~~~~~~~~~~~~l-~~~L~~~g~~~ 174 (224)
T cd04165 109 APDYAMLVVAANAGI--I--GMTKEHLGLALA---------LNIPVFVVVTKIDLAPANILQETLKDL-KRILKVPGVRK 174 (224)
T ss_pred CCCEEEEEEECCCCC--c--HHHHHHHHHHHH---------cCCCEEEEEECccccCHHHHHHHHHHH-HHHhcCCCccc
Confidence 589999999998732 2 334555565554 345899999999998654322222222 222221111
Q ss_pred --------------------CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 --------------------PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 --------------------~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.....||++||.+|.|++.|+++|..+
T Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 175 LPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred cceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 112358999999999999999998754
No 185
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.48 E-value=1.3e-06 Score=85.87 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=53.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.+... + ..+...+...+.. .. ....|++||+||+|+..... .... .+.++.
T Consensus 82 ~~~a~~iI~V~D~s~~~s-~-~~~~~~l~~~l~~----~~--~~~~piilv~NK~Dl~~~~~----~~~~----~~~l~l 145 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDR-V-VEARDELHRMLNE----DE--LRDAVLLVFANKQDLPNAMN----AAEI----TDKLGL 145 (181)
T ss_pred hccCCEEEEEEeCCcHHH-H-HHHHHHHHHHhcC----Hh--hCCCCEEEEEECCCCCCCCC----HHHH----HHHhCc
Confidence 457899999999987531 1 1111222222211 00 13468999999999854322 1221 122332
Q ss_pred CCC----CeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKL----NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~----~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..+ -.++.+||++|.|+.++++.|.+.
T Consensus 146 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred cccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 211 124568999999999999998764
No 186
>PRK00049 elongation factor Tu; Reviewed
Probab=98.47 E-value=2e-06 Score=95.19 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEE-EEEeCCCCCCCCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLV-LVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvI-LVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+. ..+. .+.++..+.. .+.|++ +|+||+|++++....+.+...++.+....
T Consensus 95 ~~~~aD~~llVVDa~~g--~~~q--t~~~~~~~~~---------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 95 GAAQMDGAILVVSAADG--PMPQ--TREHILLARQ---------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred hhccCCEEEEEEECCCC--CchH--HHHHHHHHHH---------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 56789999999999873 2222 2334444443 234665 68999999864332222333444455555
Q ss_pred CCC-CCCeEEEEecccCc----------chhhHHHHHHhhc
Q 005977 366 GAP-KLNGVYLVSARKDL----------GVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~-~~~~V~~VSAkkg~----------Gv~eLl~~I~~~l 395 (666)
+++ ....++++||.++. |+..|++.|.+..
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 542 12348999999875 4566777766543
No 187
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.47 E-value=2.4e-06 Score=86.01 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
...++|.+++|+|+.+... + ..+ ..+...+... .....|++||+||+||..... .......|. +..
T Consensus 69 y~~~ad~iIlVfDvtd~~S-f-~~l-~~w~~~i~~~------~~~~~piilVgNK~DL~~~~~v~~~~~~~~a----~~~ 135 (202)
T cd04120 69 YYRSAKGIILVYDITKKET-F-DDL-PKWMKMIDKY------ASEDAELLLVGNKLDCETDREISRQQGEKFA----QQI 135 (202)
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------CCCCCcEEEEEECcccccccccCHHHHHHHH----Hhc
Confidence 3457999999999998531 1 112 2223333322 113568999999999974332 222333332 232
Q ss_pred -CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 -GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 -g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 136 ~~~----~~~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 136 TGM----RFCEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred CCC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 32 38899999999999999888754
No 188
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.47 E-value=2.2e-06 Score=87.44 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC--------------------C
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP--------------------S 347 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp--------------------k 347 (666)
...+|++|+|+|+.+... + ..+...+.. +.+. .....|+|||.||+||.. .
T Consensus 65 ~~~ad~~IlV~Dvt~~~S-f-~~l~~~~~~-l~~~------~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r 135 (220)
T cd04126 65 CRGAAAVILTYDVSNVQS-L-EELEDRFLG-LTDT------ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR 135 (220)
T ss_pred hccCCEEEEEEECCCHHH-H-HHHHHHHHH-HHHh------cCCCCcEEEEEECcccccccccccccccccccccccccc
Confidence 457999999999998531 1 122222222 2221 113468999999999975 1
Q ss_pred CCChHHHHHHHHHHHH------hCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 348 QVSPTRLDRWVRHRAK------AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k------~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
....+....|.+.+.. ++....-...+.+||++|.|+++++..|.+.
T Consensus 136 ~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 136 QVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 1122334444432210 0000000247899999999999999888754
No 189
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.46 E-value=1.7e-07 Score=98.57 Aligned_cols=58 Identities=29% Similarity=0.324 Sum_probs=43.5
Q ss_pred EEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC------------------CceEEEECCCCCC
Q 005977 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP------------------AKAKLYDTPGLLH 462 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~------------------~~~~liDTPGi~~ 462 (666)
+.+||.||||||||+|+|++... .++++||||++...-...++ ..+.++||||+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~------~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~ 74 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA------EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVK 74 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC------ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCC
Confidence 47899999999999999998653 23689999988654221122 2488999999996
Q ss_pred Cc
Q 005977 463 PH 464 (666)
Q Consensus 463 ~~ 464 (666)
..
T Consensus 75 ~a 76 (274)
T cd01900 75 GA 76 (274)
T ss_pred CC
Confidence 54
No 190
>PRK12735 elongation factor Tu; Reviewed
Probab=98.46 E-value=2.2e-06 Score=94.84 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=55.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEE-EEEeCCCCCCCCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLV-LVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvI-LVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|+|+.+.. .+. ...++..+.. .+.|.+ +|+||+|++........+..-++.+.+..
T Consensus 95 ~~~~aD~~llVvda~~g~--~~q--t~e~l~~~~~---------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 95 GAAQMDGAILVVSAADGP--MPQ--TREHILLARQ---------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred hhccCCEEEEEEECCCCC--chh--HHHHHHHHHH---------cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 567899999999998732 222 1223333332 234544 68999999854332222222233344444
Q ss_pred CCCC-CCeEEEEecccCc----------chhhHHHHHHhhc
Q 005977 366 GAPK-LNGVYLVSARKDL----------GVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~-~~~V~~VSAkkg~----------Gv~eLl~~I~~~l 395 (666)
+++. ...++++||.+|+ ++..|++.|.+.+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 4321 2348999999985 4566666666554
No 191
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.45 E-value=3e-06 Score=76.47 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=53.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.++... ......+...+... ...+.|+++|+||+|+.......... ..........
T Consensus 66 ~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~- 134 (157)
T cd00882 66 YRGADGIILVYDVTDRESF--ENVKEWLLLILINK------EGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELG- 134 (157)
T ss_pred hcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhh------ccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcC-
Confidence 4568999999999874311 11111100111111 11457899999999998665422111 0111112222
Q ss_pred CCCCeEEEEecccCcchhhHHHHHH
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
..++.+|+.++.|+.++++.|.
T Consensus 135 ---~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 135 ---VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ---CcEEEEecCCCCChHHHHHHHh
Confidence 3489999999999999998875
No 192
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.45 E-value=4.2e-07 Score=98.96 Aligned_cols=60 Identities=28% Similarity=0.288 Sum_probs=45.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l------------------~~~~~liDTPGi 460 (666)
.++.+||.||||||||+|+|++.. .. ++++||||++...-...+ +..+.++||||+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~-----v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL 76 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AE-----AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL 76 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-Ce-----ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence 478999999999999999999765 32 368999998864311111 124899999999
Q ss_pred CCCc
Q 005977 461 LHPH 464 (666)
Q Consensus 461 ~~~~ 464 (666)
....
T Consensus 77 ~~~a 80 (364)
T PRK09601 77 VKGA 80 (364)
T ss_pred CCCC
Confidence 8644
No 193
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.44 E-value=4.5e-06 Score=79.89 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=56.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+.. ++ ..+ ..+++.+... .....|+++|.||+||..... ....... +.+..+
T Consensus 70 ~~~~~~~i~v~d~~~~~-sf-~~~-~~~~~~~~~~------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~----~~~~~~ 136 (161)
T cd04117 70 YRRAQGIFLVYDISSER-SY-QHI-MKWVSDVDEY------APEGVQKILIGNKADEEQKRQVGDEQGNK----LAKEYG 136 (161)
T ss_pred hcCCcEEEEEEECCCHH-HH-HHH-HHHHHHHHHh------CCCCCeEEEEEECcccccccCCCHHHHHH----HHHHcC
Confidence 45789999999998742 11 111 2222322221 113468999999999975432 2222222 233444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++++..|.+.
T Consensus 137 ~----~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 M----DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHhh
Confidence 3 37999999999999999988753
No 194
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.44 E-value=2.6e-06 Score=96.39 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=52.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+.. .+... ..+..+... +.+++|+|+||+|++.... ....+...++.+.+..
T Consensus 127 ~l~~aD~allVVDa~~G~--~~qt~--~~~~l~~~l--------g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~ 194 (474)
T PRK05124 127 GASTCDLAILLIDARKGV--LDQTR--RHSFIATLL--------GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQL 194 (474)
T ss_pred HHhhCCEEEEEEECCCCc--cccch--HHHHHHHHh--------CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhc
Confidence 456799999999998732 22111 111122211 2357899999999985332 1112222223333344
Q ss_pred CCCCCCeEEEEecccCcchhhHH
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl 388 (666)
++.....++++||++|.|+..+.
T Consensus 195 ~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 195 PGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred CCCCCceEEEEEeecCCCccccc
Confidence 41113569999999999998754
No 195
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.44 E-value=4.8e-07 Score=101.34 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=48.8
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
.++.+|.++|.||||||||+|+|++..... ++..||||++.+.....+++ .+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai-----vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI-----VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc-----cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 356789999999999999999999764332 36889999997765443433 5789999999743
No 196
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.44 E-value=1.2e-06 Score=101.65 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=64.1
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |...+.+ +...+|.+++|+|+.+.. ..... ..+...+. .+.|+|+|+||+|+....
T Consensus 78 PG~~dF~~~v~~------~l~~aD~aILVvDat~g~--~~qt~-~~~~~~~~----------~~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 78 PGHVDFSYEVSR------SLAACEGALLLVDAAQGI--EAQTL-ANVYLALE----------NDLEIIPVINKIDLPSAD 138 (595)
T ss_pred CCcHHHHHHHHH------HHHhCCEEEEEecCCCCC--CHhHH-HHHHHHHH----------cCCCEEEEEECcCCCccC
Confidence 6654 4444433 456799999999998732 22221 12222221 245899999999986432
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
...+ .+.+...++.. ..+++++||++|.|+++|++.|.+.++.
T Consensus 139 --~~~~---~~el~~~lg~~-~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 139 --PERV---KKEIEEVIGLD-ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred --HHHH---HHHHHHHhCCC-cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1111 12222334432 3458999999999999999999887763
No 197
>PRK00089 era GTPase Era; Reviewed
Probab=98.43 E-value=2.9e-07 Score=97.08 Aligned_cols=61 Identities=34% Similarity=0.413 Sum_probs=46.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
+.|+++|.||||||||+|+|++..... +++.|+||++.+..-...+ ..+.++||||+..+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~-----vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI-----VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee-----cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 578999999999999999999865432 3688999988654221112 368899999997655
No 198
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.43 E-value=3.2e-07 Score=97.69 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=51.1
Q ss_pred CcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCC
Q 005977 381 DLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPG 459 (666)
Q Consensus 381 g~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~-l~~~~~liDTPG 459 (666)
..-+.+++..|.+.-....+|+++|.+||||||++|+|++.....+ |..+++|......... -+..+.+|||||
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~v-----s~f~s~t~~~~~~~~~~~G~~l~VIDTPG 95 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATV-----SAFQSEGLRPMMVSRTRAGFTLNIIDTPG 95 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccc-----cCCCCcceeEEEEEEEECCeEEEEEECCC
Confidence 3334444444444433456899999999999999999998764332 4555554443222211 234789999999
Q ss_pred CCCCc
Q 005977 460 LLHPH 464 (666)
Q Consensus 460 i~~~~ 464 (666)
+....
T Consensus 96 L~d~~ 100 (313)
T TIGR00991 96 LIEGG 100 (313)
T ss_pred CCchH
Confidence 98754
No 199
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.43 E-value=2.5e-07 Score=96.92 Aligned_cols=62 Identities=34% Similarity=0.289 Sum_probs=47.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
.+|+|||.||||||||+|.|++.....+ |..+-|||.-+.--..- .-...++||||++.+..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~v-----S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAV-----SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccc-----cccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 5789999999999999999999876654 67888888754321111 12678899999997763
No 200
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.43 E-value=1.2e-06 Score=83.75 Aligned_cols=92 Identities=27% Similarity=0.284 Sum_probs=56.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + +....+...+.... ......|+++|+||+|+.... ........+ .+..+
T Consensus 69 ~~~~d~~i~v~d~~~~~s-~--~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 137 (165)
T cd04146 69 IRWADGFVLVYSITDRSS-F--DEISQLKQLIREIK----KRDREIPVILVGNKADLLHYRQVSTEEGEKL----ASELG 137 (165)
T ss_pred HHhCCEEEEEEECCCHHH-H--HHHHHHHHHHHHHh----cCCCCCCEEEEEECCchHHhCccCHHHHHHH----HHHcC
Confidence 356899999999987431 1 11122333333311 001356899999999986432 222223333 23444
Q ss_pred CCCCCeEEEEecccCc-chhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~-Gv~eLl~~I~~~ 394 (666)
. .++.+||+++. |++++++.|.+.
T Consensus 138 ~----~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 138 C----LFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred C----EEEEeCCCCCchhHHHHHHHHHHH
Confidence 3 37899999995 999999988754
No 201
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.42 E-value=2.7e-06 Score=86.48 Aligned_cols=89 Identities=25% Similarity=0.179 Sum_probs=56.9
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCCC
Q 005977 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~~ 368 (666)
++|++++|+|+.+... + .....++..+.... .....|+|+|+||+|+..... ....... +....+.
T Consensus 72 ~ad~iilV~d~td~~S-~--~~~~~~~~~l~~~~-----~~~~~piilV~NK~Dl~~~~~v~~~~~~~----~a~~~~~- 138 (221)
T cd04148 72 QGDAFVVVYSVTDRSS-F--ERASELRIQLRRNR-----QLEDRPIILVGNKSDLARSREVSVQEGRA----CAVVFDC- 138 (221)
T ss_pred CCCEEEEEEECCCHHH-H--HHHHHHHHHHHHhc-----CCCCCCEEEEEEChhccccceecHHHHHH----HHHHcCC-
Confidence 7899999999998532 1 11223334343321 013468999999999976432 2121222 2334443
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||+++.|+++|++.|.+.
T Consensus 139 ---~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 139 ---KFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred ---eEEEecCCCCCCHHHHHHHHHHH
Confidence 38899999999999999988754
No 202
>PLN03108 Rab family protein; Provisional
Probab=98.41 E-value=4.9e-06 Score=83.75 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=55.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.++. ++ ..+.. ++..+... .....|+++|+||+||.... ........+. +..+
T Consensus 76 ~~~ad~~vlv~D~~~~~-s~-~~l~~-~~~~~~~~------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 142 (210)
T PLN03108 76 YRGAAGALLVYDITRRE-TF-NHLAS-WLEDARQH------ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA----KEHG 142 (210)
T ss_pred hccCCEEEEEEECCcHH-HH-HHHHH-HHHHHHHh------cCCCCcEEEEEECccCccccCCCHHHHHHHH----HHcC
Confidence 35689999999998743 11 11111 22222221 11346899999999997543 2223334443 3445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. .++.+||+++.|+++++..+..
T Consensus 143 ~----~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 143 L----IFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHH
Confidence 3 3899999999999998877654
No 203
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.41 E-value=5e-06 Score=86.26 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=58.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh---hhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD---DAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~---~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k 363 (666)
...+|++++|+|+.+.. + .+....+++.+..... .........|+|+|+||+|+.. .......+..++. .
T Consensus 69 ~~~ad~iIlVfdv~~~~-S--f~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~---~ 142 (247)
T cd04143 69 ILTGDVFILVFSLDNRE-S--FEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG---G 142 (247)
T ss_pred hccCCEEEEEEeCCCHH-H--HHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH---h
Confidence 45789999999998743 1 1112223333322100 0000113468999999999975 3333333443321 1
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
..+ ..++.+||++|.|+++|++.|...+
T Consensus 143 ~~~----~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 DEN----CAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred cCC----CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 111 2489999999999999999998753
No 204
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=92.49 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=96.1
Q ss_pred CCCCCCCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccc--ccc-ccCc
Q 005977 196 DDLDLDGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEV--AEN-LIPD 271 (666)
Q Consensus 196 ~~~dl~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~--~q~-~iP~ 271 (666)
...|.+.++..+-|+|||| ||+++.+.+.|.-++ .-+++ |+--|-|.+.... .|+ ..|+
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA-~YPFT----------------TK~i~vGhfe~~~~R~QvIDTPG 224 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA-PYPFT----------------TKGIHVGHFERGYLRIQVIDTPG 224 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccC-CCCcc----------------ccceeEeeeecCCceEEEecCCc
Confidence 3566777888777999999 556688888885433 23344 4444444443321 121 1354
Q ss_pred ch---H--HHHHHHHhcCcccc-cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCC
Q 005977 272 FD---F--DRVIATRLMKPSGN-ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 272 ~d---f--~~~L~~~l~rP~a~-~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
.- + .+.+-+++.. ++ .-.++|+|++|.+..-|. +.+.-..|+..++.. -.+|+++|+||+|+.
T Consensus 225 lLDRPl~ErN~IE~qAi~--AL~hl~~~IlF~~D~Se~cgy-~lE~Q~~L~~eIk~~--------f~~p~v~V~nK~D~~ 293 (346)
T COG1084 225 LLDRPLEERNEIERQAIL--ALRHLAGVILFLFDPSETCGY-SLEEQISLLEEIKEL--------FKAPIVVVINKIDIA 293 (346)
T ss_pred ccCCChHHhcHHHHHHHH--HHHHhcCeEEEEEcCccccCC-CHHHHHHHHHHHHHh--------cCCCeEEEEeccccc
Confidence 31 1 1223333322 22 236899999999987654 434344455555442 226899999999998
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 346 PSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 346 pk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..+. +.+...... ..| ......+|+.++.+++.+...+.+.
T Consensus 294 ~~e~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DEEK----LEEIEASVL-EEG---GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred chhH----HHHHHHHHH-hhc---cccccceeeeehhhHHHHHHHHHHH
Confidence 6544 333222222 223 1235678999999999998888765
No 205
>PLN03127 Elongation factor Tu; Provisional
Probab=98.40 E-value=2.7e-06 Score=95.54 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=55.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
++..+|++++|||+.+.. .+. .+.++..+.. .+.| +|+|+||+|++++....+.+...++.+....
T Consensus 144 g~~~aD~allVVda~~g~--~~q--t~e~l~~~~~---------~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 144 GAAQMDGGILVVSAPDGP--MPQ--TKEHILLARQ---------VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred HHhhCCEEEEEEECCCCC--chh--HHHHHHHHHH---------cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 345699999999998732 222 2344444443 2346 5789999999864332222333333444433
Q ss_pred CCC-CCCeEEEEecc---cCcc-------hhhHHHHHHhhcC
Q 005977 366 GAP-KLNGVYLVSAR---KDLG-------VRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~-~~~~V~~VSAk---kg~G-------v~eLl~~I~~~l~ 396 (666)
+++ ....++++||. +|.| +..|++.|.++++
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 431 11236777775 4444 5677777776654
No 206
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.40 E-value=4e-06 Score=85.09 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+|+|+|+.+... ...+ ..++..+.+. . .+.|++||+||+||.........+ .| .+..+.
T Consensus 83 ~~~~~~~ilvfD~~~~~s--~~~i-~~w~~~i~~~------~-~~~piilvgNK~Dl~~~~v~~~~~-~~----~~~~~~ 147 (219)
T PLN03071 83 YIHGQCAIIMFDVTARLT--YKNV-PTWHRDLCRV------C-ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNL 147 (219)
T ss_pred cccccEEEEEEeCCCHHH--HHHH-HHHHHHHHHh------C-CCCcEEEEEEchhhhhccCCHHHH-HH----HHhcCC
Confidence 456899999999987431 1111 1222333321 1 346899999999996544332222 22 223332
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||++|.|+++++..|.+.
T Consensus 148 ----~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 148 ----QYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred ----EEEEcCCCCCCCHHHHHHHHHHH
Confidence 37899999999999999888754
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.40 E-value=2.9e-06 Score=86.10 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=52.1
Q ss_pred cccccCEEEEEEecCCCC-----CCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC---hHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFD-----GMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS---PTRLDRWV 358 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~-----gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~---~~~L~~wl 358 (666)
+...+|++++|||+.+.. +... ...+ .+..+... ..+|+|+|+||+|+...... ...+...+
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~-~~~~-~~~~~~~~--------~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l 166 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGG-QTRE-HALLARTL--------GVKQLIVAVNKMDDVTVNWSEERYDEIKKEL 166 (219)
T ss_pred HhhhCCEEEEEEECCCCcccccccccc-chHH-HHHHHHHc--------CCCeEEEEEEccccccccccHHHHHHHHHHH
Confidence 456799999999998842 1111 1111 11222221 33688999999999853221 12233344
Q ss_pred HHHHHhCCCCC-CCeEEEEecccCcchh
Q 005977 359 RHRAKAGGAPK-LNGVYLVSARKDLGVR 385 (666)
Q Consensus 359 ~~~~k~~g~~~-~~~V~~VSAkkg~Gv~ 385 (666)
+.+.+..++.. -..++++||++|.|++
T Consensus 167 ~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 167 SPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 44445555321 1349999999999987
No 208
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.39 E-value=6.9e-07 Score=100.37 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=47.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLH 462 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~ 462 (666)
.+.+|.++|.+|||||||+|+|++.... .++..||||++.......++ ..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-----IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 4568999999999999999999976432 23689999999765443333 3678999999874
No 209
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.36 E-value=1.5e-06 Score=83.73 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=52.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHH--HHHHHh
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV--RHRAKA 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl--~~~~k~ 364 (666)
...++|++++|+|+.+.. ++ ......+.+.+.. . .+.|+++|+||+|+..... ...+...+ ..+.++
T Consensus 64 ~~~~ad~ii~V~D~t~~~-s~-~~~~~~l~~~~~~-------~-~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~ 132 (164)
T cd04162 64 YLSGSQGLIFVVDSADSE-RL-PLARQELHQLLQH-------P-PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARG 132 (164)
T ss_pred HHhhCCEEEEEEECCCHH-HH-HHHHHHHHHHHhC-------C-CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCC
Confidence 346799999999998843 11 1112222222111 1 3578999999999864332 12121111 111112
Q ss_pred CCCCCCCeEEEEeccc------CcchhhHHHHHHh
Q 005977 365 GGAPKLNGVYLVSARK------DLGVRNLLAFIKE 393 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkk------g~Gv~eLl~~I~~ 393 (666)
.+. .++.+||++ +.|++++++.+.+
T Consensus 133 ~~~----~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 133 RRW----ILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred Cce----EEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 222 367788888 9999999887653
No 210
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.36 E-value=3.2e-06 Score=99.66 Aligned_cols=158 Identities=14% Similarity=0.221 Sum_probs=85.5
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcch-HH
Q 005977 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~d-f~ 275 (666)
.....+++|++|+|+|+| +++........+. .+.+.-. ..+... +.. ......+ .+|++. |.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~----------~GiTq~i-~~~~v~-~~~-~~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA----------GGITQKI-GAYEVE-FEY-KDENQKIVFLDTPGHEAFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccC----------Ccccccc-ceEEEE-EEe-cCCceEEEEEECCcHHHHH
Confidence 456778899999996555 8887655321110 0011000 011110 000 0001111 237765 43
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
..+.+ ....+|++++|||+.+ |..+... +. +..+.. .+.|+|+|+||+|+.... ...+.
T Consensus 310 ~mr~r------g~~~aDiaILVVDA~d--Gv~~QT~-E~-I~~~k~---------~~iPiIVViNKiDl~~~~--~e~v~ 368 (742)
T CHL00189 310 SMRSR------GANVTDIAILIIAADD--GVKPQTI-EA-INYIQA---------ANVPIIVAINKIDKANAN--TERIK 368 (742)
T ss_pred HHHHH------HHHHCCEEEEEEECcC--CCChhhH-HH-HHHHHh---------cCceEEEEEECCCccccC--HHHHH
Confidence 33322 4567999999999987 3333221 22 222322 346899999999997532 22233
Q ss_pred HHHHHH---HHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 356 RWVRHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~---~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++..+ ...++. ...++++||++|.|+++|++.|..+
T Consensus 369 ~eL~~~~ll~e~~g~--~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 369 QQLAKYNLIPEKWGG--DTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHHHhccchHhhCC--CceEEEEECCCCCCHHHHHHhhhhh
Confidence 333221 112221 2348999999999999999988654
No 211
>PLN03126 Elongation factor Tu; Provisional
Probab=98.34 E-value=5.3e-06 Score=93.89 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=82.3
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHH------HHhhhcCccee-ecceecceecceecccccccccCcch-
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAR------EAQKEKGEVTV-CARCHSLRNYGQVKNEVAENLIPDFD- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~------~~~~~~~~~~~-CqRC~rLr~ygkv~~~~~q~~iP~~d- 273 (666)
...+++|.+|+|||+| ++|......+..++.... .+++..+.+.. +..++...++ ++ .-+..|++.
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~-~i----~liDtPGh~~ 156 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENR-HY----AHVDCPGHAD 156 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCc-EE----EEEECCCHHH
Confidence 4457799999996655 999976544433221100 01111222222 2222221111 11 011237753
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
|...|.. ++..+|++++|||+.+ |..+.. +..+..+... +.+.+|+++||+|+++.+...+.
T Consensus 157 f~~~~~~------g~~~aD~ailVVda~~--G~~~qt--~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~ 218 (478)
T PLN03126 157 YVKNMIT------GAAQMDGAILVVSGAD--GPMPQT--KEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLEL 218 (478)
T ss_pred HHHHHHH------HHhhCCEEEEEEECCC--CCcHHH--HHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHH
Confidence 4444433 4567899999999987 433322 2233333321 22337889999999874332233
Q ss_pred HHHHHHHHHHhCCCC-CCCeEEEEecccCcc
Q 005977 354 LDRWVRHRAKAGGAP-KLNGVYLVSARKDLG 383 (666)
Q Consensus 354 L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~G 383 (666)
+..-++.+.+..|++ ....++++||.++.+
T Consensus 219 i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 219 VELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 333444455555543 123488999998864
No 212
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.34 E-value=3e-06 Score=77.81 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHH
Q 005977 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
..|+++|+||+|+..... ...........+ ...++.+||+++.|+.++++.|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~-----~~~~~~~~~~~~---~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKL-----KTHVAFLFAKLN---GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchh-----hHHHHHHHhhcc---CCceEEeecCCCCCHHHHHHHhh
Confidence 458999999999976442 122222222333 23499999999999999998875
No 213
>PRK15494 era GTPase Era; Provisional
Probab=98.34 E-value=7.1e-07 Score=96.74 Aligned_cols=60 Identities=37% Similarity=0.471 Sum_probs=45.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
.+|.++|.+|||||||+|+|++.... .+++.|+||++.+...... +..+.++||||+..+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~-----ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLS-----IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCcee-----eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 58999999999999999999976432 2468899998865432222 236789999999754
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.34 E-value=7.7e-06 Score=91.21 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=52.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+............+ ..+... ..+++|+|+||+|+..... ....+..-++.+.+..
T Consensus 105 ~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--------~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~ 175 (426)
T TIGR00483 105 GASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--------GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKV 175 (426)
T ss_pred hhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--------CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHc
Confidence 45679999999999985311111111111 111111 2357899999999975322 1111222333344455
Q ss_pred CCCC-CCeEEEEecccCcchhhHH
Q 005977 366 GAPK-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 366 g~~~-~~~V~~VSAkkg~Gv~eLl 388 (666)
++.. ...++++||++|.|+.++.
T Consensus 176 g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 176 GYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred CCCcccceEEEeeccccccccccc
Confidence 5321 2358999999999998744
No 215
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.33 E-value=4.5e-06 Score=80.63 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=56.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-------------ChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-------------SPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-------------~~~~ 353 (666)
...++|++++|.|+.+... + ..+...++..+... ....|+++|+||+||.+... ....
T Consensus 68 ~~~~a~~~i~v~d~~~~~s-f-~~~~~~~~~~~~~~-------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSS-F-QNISEKWIPEIRKH-------NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR 138 (173)
T ss_pred ccCCCcEEEEEEECCCHHH-H-HHHHHHHHHHHHhh-------CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH
Confidence 4568999999999987531 1 11212233333321 03468999999999975321 1112
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHH
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
...| .+..+ ...++.+||++|.|+++|++.+.
T Consensus 139 ~~~~----a~~~~---~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 139 AKAL----AEKIG---ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHH----HHHhC---CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2222 33444 33589999999999999998764
No 216
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.33 E-value=6.1e-06 Score=91.58 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=57.2
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |.+.|.. ++..+|++++|||+... ..+.. +..+..+... ..+++|+|+||+|+....
T Consensus 88 PGh~~f~~~~~~------~~~~aD~allVVda~~G--~~~qt--~~~~~~~~~~--------~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 88 PGHEQYTRNMAT------GASTADLAVLLVDARKG--VLEQT--RRHSYIASLL--------GIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred CCHHHHHHHHHH------HHhhCCEEEEEEECCCC--Ccccc--HHHHHHHHHc--------CCCcEEEEEEecccccch
Confidence 7753 4444433 45679999999999873 33321 1122222221 235689999999998533
Q ss_pred CC-hHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhH
Q 005977 349 VS-PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 349 ~~-~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eL 387 (666)
.. ...+...+..+.+..++. ...++++||++|.|++++
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~-~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFR-DVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CccEEEeecccCCCCccc
Confidence 21 111222223333444532 224899999999998863
No 217
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.33 E-value=2.7e-06 Score=94.10 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhh-HHHHHHhhcCCCccEEEE
Q 005977 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRN-LLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~e-Ll~~I~~~l~~~~~v~vv 404 (666)
.+|+|+|+||+|+..... .+..+ .+. + +..++++||+.+.+++. |++.+.+++|.+...+.-
T Consensus 217 ~KPvI~VlNK~D~~~~~~---~l~~i----~~~-~---~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE---NIERL----KEE-K---YYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL 279 (396)
T ss_pred CCCEEEEEEchhcccchH---HHHHH----Hhc-C---CCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence 379999999999764322 12222 111 3 45699999999999999 888888888765444443
No 218
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.33 E-value=3.9e-06 Score=82.78 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-------------hHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
....++++++|.|+.+... + ..+...++..+... . ...|++||+||+||...... ...
T Consensus 68 ~~~~a~~~ilv~dv~~~~s-f-~~~~~~~~~~i~~~------~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDS-L-ENVESKWLGEIREH------C-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE 138 (189)
T ss_pred cccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH
Confidence 4467899999999987531 1 11222223333321 1 34689999999999754221 111
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...| .+..+ .-.++.+||++|.|+++++..|.+.
T Consensus 139 ~~~~----~~~~~---~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 139 GLAV----AKRIN---ALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred HHHH----HHHcC---CCEEEEccCCcCCCHHHHHHHHHHH
Confidence 1222 22333 1237899999999999999988764
No 219
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.32 E-value=9.9e-07 Score=93.36 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=38.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+|.++|+||+|++..+. +... .+. .+.+++||++++|+++|++.|.+.+.
T Consensus 240 ~p~l~v~NKiD~~~~e~----~~~l----~~~------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPGLEE----LERL----ARK------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccCHHH----HHHH----Hhc------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 58999999999987433 2222 111 14899999999999999999988653
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.32 E-value=4.2e-06 Score=92.49 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=47.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+. ..+. ...++..+... +.+++|+|+||+|++++....+.+..-++.+.+..+
T Consensus 95 ~~~~~D~~ilVvda~~g--~~~q--t~e~l~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 95 GAAQMDGAILVVSATDG--PMPQ--TREHILLARQV--------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHhhCCEEEEEEECCCC--CcHH--HHHHHHHHHHc--------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999873 2222 22333333331 233455789999998643322222222333444444
Q ss_pred CCC-CCeEEEEecccCc
Q 005977 367 APK-LNGVYLVSARKDL 382 (666)
Q Consensus 367 ~~~-~~~V~~VSAkkg~ 382 (666)
+.. ...++++||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 321 1348999999875
No 221
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.32 E-value=1.1e-06 Score=85.87 Aligned_cols=61 Identities=26% Similarity=0.344 Sum_probs=46.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~ 464 (666)
..+++++|.+|+|||||+|+|++.... ..++..+|+|.++..+. .+..+.++||||+....
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~----~~~~~~~~~t~~~~~~~--~~~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKL----ARTSKTPGRTQLINFFE--VNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc----ccccCCCCcceEEEEEE--eCCcEEEEeCCCCcccc
Confidence 358999999999999999999976421 12357899998865544 34578999999986543
No 222
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.32 E-value=8.3e-07 Score=88.19 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=90.5
Q ss_pred eeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecc-eecccccccccCcch--------H
Q 005977 205 PAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYG-QVKNEVAENLIPDFD--------F 274 (666)
Q Consensus 205 ~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~yg-kv~~~~~q~~iP~~d--------f 274 (666)
.++||+||+|| +++|.+.+++...+.... ...+..|++-+... .| ++.- +..|++. .
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~--------~~~T~~~~~~~~~~-~~~~i~v----iDTPG~~d~~~~~~~~ 69 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSA--------SSVTKTCQKESAVW-DGRRVNV----IDTPGLFDTSVSPEQL 69 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCCccccccCC--------CCcccccceeeEEE-CCeEEEE----EECcCCCCccCChHHH
Confidence 35799999995 555999999864332211 12234444332211 11 1100 1125432 2
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
.+.|.+.+.. .....++|++|+|+.++. ..+..+++.+...... . -.+++++|+|+.|.+.... +
T Consensus 70 ~~~i~~~~~~--~~~g~~~illVi~~~~~t-----~~d~~~l~~l~~~fg~-~---~~~~~ivv~T~~d~l~~~~----~ 134 (196)
T cd01852 70 SKEIVRCLSL--SAPGPHAFLLVVPLGRFT-----EEEEQAVETLQELFGE-K---VLDHTIVLFTRGDDLEGGT----L 134 (196)
T ss_pred HHHHHHHHHh--cCCCCEEEEEEEECCCcC-----HHHHHHHHHHHHHhCh-H---hHhcEEEEEECccccCCCc----H
Confidence 3344444444 456789999999998732 2345555656542110 0 1146899999999987653 3
Q ss_pred HHHH-------HHHHHhCCCC--CCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 355 DRWV-------RHRAKAGGAP--KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 355 ~~wl-------~~~~k~~g~~--~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
..|+ +.+.+..+.. .|.+... |+.++.++.+|++.|.+.+++
T Consensus 135 ~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 135 EDYLENSCEALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHhccHHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHh
Confidence 3332 2233333321 0222223 467789999999999987764
No 223
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.32 E-value=8.5e-06 Score=79.45 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH---------HH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD---------RW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~---------~w 357 (666)
....+|++|+|+|+.++. ++ ..+...++..+... . .+.|++||.||+||.........+. .-
T Consensus 69 ~~~~~d~~ilv~d~~~~~-sf-~~~~~~~~~~~~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~ 139 (174)
T cd01871 69 SYPQTDVFLICFSLVSPA-SF-ENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 139 (174)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHH
Confidence 456799999999998853 11 11212223333321 1 3468999999999964321111110 00
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...+.+..+ ...++.+||++|.|+++|++.+.+
T Consensus 140 ~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 140 GLAMAKEIG---AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHHHcC---CcEEEEecccccCCHHHHHHHHHH
Confidence 112233343 124789999999999999998864
No 224
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.32 E-value=1.1e-06 Score=81.81 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=44.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
.+++++|.+|+|||||+|+|++..... ++..||||.+.......... .+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-----VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-----ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 478999999999999999999765322 25789999886544332332 6789999998643
No 225
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.31 E-value=5.5e-06 Score=91.93 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|||+.+... .+ +..+.+ ..+... ..+++++|+||+|+++.......+.+ +..+.....
T Consensus 100 g~~~aD~aIlVVDa~~g~~-~~-qt~e~l-~~l~~~--------gi~~iIVvvNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 167 (406)
T TIGR03680 100 GAALMDGALLVIAANEPCP-QP-QTKEHL-MALEII--------GIKNIVIVQNKIDLVSKEKALENYEE-IKEFVKGTV 167 (406)
T ss_pred HHHHCCEEEEEEECCCCcc-cc-chHHHH-HHHHHc--------CCCeEEEEEEccccCCHHHHHHHHHH-HHhhhhhcc
Confidence 4456899999999997421 12 112222 222221 33578999999999864321111111 111222111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .-..++++||++|.|+++|++.|...++
T Consensus 168 ~-~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 168 A-ENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred c-CCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 0 0124899999999999999999988654
No 226
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.31 E-value=1.1e-05 Score=77.76 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=53.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
..++|++++|+|+.++.. ... ...+++.+.... .....|+++|+||+|+..... .......+ .+...
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~-~~~~~~~~~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (170)
T cd04115 73 YRNVHAVVFVYDVTNMAS--FHS-LPSWIEECEQHS-----LPNEVPRILVGNKCDLREQIQVPTDLAQRF----ADAHS 140 (170)
T ss_pred hcCCCEEEEEEECCCHHH--HHh-HHHHHHHHHHhc-----CCCCCCEEEEEECccchhhcCCCHHHHHHH----HHHcC
Confidence 457899999999987431 111 122223333211 113468999999999875432 22222222 33333
Q ss_pred CCCCCeEEEEeccc---CcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARK---DLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkk---g~Gv~eLl~~I~~ 393 (666)
. .++.+||++ +.++++++..+.+
T Consensus 141 ~----~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 141 M----PLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred C----cEEEEeccCCcCCCCHHHHHHHHHH
Confidence 2 288999999 7788888777654
No 227
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.30 E-value=1.1e-05 Score=77.82 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=52.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHH--HHHHHh
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV--RHRAKA 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl--~~~~k~ 364 (666)
...++|++++|+|+.+.. ++ ..+ ...+..+.+.. ...++|+++|+||+|+..... ...+...+ ..+.+.
T Consensus 63 ~~~~a~~ii~V~D~s~~~-s~-~~~-~~~l~~l~~~~-----~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~l~~~~~~ 133 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDD-RV-QEV-KEILRELLQHP-----RVSGKPILVLANKQDKKNALL-GADVIEYLSLEKLVNE 133 (167)
T ss_pred HHcCCCEEEEEEECCchh-HH-HHH-HHHHHHHHcCc-----cccCCcEEEEEeCCCCcCCCC-HHHHHHhcCcccccCC
Confidence 346799999999998853 11 112 22222222110 013468999999999865432 11122211 001101
Q ss_pred CCCCCCCeEEEEecccC------cchhhHHHHHH
Q 005977 365 GGAPKLNGVYLVSARKD------LGVRNLLAFIK 392 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg------~Gv~eLl~~I~ 392 (666)
.+. .-.++.+||++| .|+.+-++.|.
T Consensus 134 ~~~--~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 134 NKS--LCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCc--eEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 110 124777999998 78988888775
No 228
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.30 E-value=6.2e-06 Score=95.82 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=87.9
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHH--HHH---HHHhhhcCcceeecceecceecceeccccccc---ccCcch-H
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERK--KKA---REAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-F 274 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK--~~a---~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~d-f 274 (666)
.++||-.++|||+| +++....-.+..+. .+. -..+++.+.+..++.++ + .|.........+ ..|++. |
T Consensus 10 i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~-~-~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 10 FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVR-L-NYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEE-E-EEEccCCCcEEEEEEECCCcHHH
Confidence 46799999997777 88876422211110 000 00111223333333222 1 111000011111 237653 5
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+.+ +...+|.+++|||+.+.. ..... ..+ ..+.. .+.|+|+|+||+|+.....
T Consensus 88 ~~~v~~------sl~~aD~aILVVDas~gv--~~qt~-~~~-~~~~~---------~~lpiIvViNKiDl~~a~~----- 143 (600)
T PRK05433 88 SYEVSR------SLAACEGALLVVDASQGV--EAQTL-ANV-YLALE---------NDLEIIPVLNKIDLPAADP----- 143 (600)
T ss_pred HHHHHH------HHHHCCEEEEEEECCCCC--CHHHH-HHH-HHHHH---------CCCCEEEEEECCCCCcccH-----
Confidence 444443 445689999999998742 22221 112 11211 3457999999999864321
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
......+...++.. ..+++++||++|.|+++|++.|.+.+|.
T Consensus 144 ~~v~~ei~~~lg~~-~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 144 ERVKQEIEDVIGID-ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHHhCCC-cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 11112222233432 2458999999999999999999887663
No 229
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.29 E-value=6e-06 Score=98.14 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=83.4
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcch-HHHHH
Q 005977 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD-FDRVI 278 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~d-f~~~L 278 (666)
.-...+++|.+|+|+|+| +++.+.++...+. .+.+. -...+....-+... .-+..|++. |...+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~----------~GIT~-~iga~~v~~~~~~I---tfiDTPGhe~F~~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA----------GGITQ-HIGAYQVETNGGKI---TFLDTPGHEAFTAMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccc----------Cceee-eccEEEEEECCEEE---EEEECCCCccchhHH
Confidence 455567799999996555 8887655421110 01110 01111111001000 001237764 44333
Q ss_pred HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 005977 279 ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWV 358 (666)
Q Consensus 279 ~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl 358 (666)
.+ ....+|++++|+|+.+ |..+... +. +..+.. .+.|+|+|+||+|+.... ...+...+
T Consensus 355 ~r------ga~~aDiaILVVdAdd--Gv~~qT~-e~-i~~a~~---------~~vPiIVviNKiDl~~a~--~e~V~~eL 413 (787)
T PRK05306 355 AR------GAQVTDIVVLVVAADD--GVMPQTI-EA-INHAKA---------AGVPIIVAINKIDKPGAN--PDRVKQEL 413 (787)
T ss_pred Hh------hhhhCCEEEEEEECCC--CCCHhHH-HH-HHHHHh---------cCCcEEEEEECccccccC--HHHHHHHH
Confidence 32 4456899999999987 4333321 11 222222 346899999999995432 22233222
Q ss_pred HHH---HHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 359 RHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 359 ~~~---~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
... ...++. ...++++||++|.|+++|++.|..
T Consensus 414 ~~~~~~~e~~g~--~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 414 SEYGLVPEEWGG--DTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHhcccHHHhCC--CceEEEEeCCCCCCchHHHHhhhh
Confidence 211 111221 124899999999999999998863
No 230
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.29 E-value=9.7e-06 Score=79.11 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---------HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|+|+.+... + ..+...+...+... . ...|+|||+||+|+.......+.+ ...
T Consensus 69 ~~~~a~~~ilv~d~~~~~s-~-~~~~~~w~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~ 139 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSS-F-ENVKEKWVPEITHH------C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPET 139 (175)
T ss_pred hcccCCEEEEEEECCCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHH
Confidence 4457999999999987431 1 11222233333321 1 346999999999986542110000 111
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+.+.+..+ ...++.+||++|.|++++++.+..
T Consensus 140 ~~~~a~~~~---~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 140 GEKLARDLK---AVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHhC---CcEEEEecCCCCCCHHHHHHHHHH
Confidence 222233333 234899999999999999998875
No 231
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.28 E-value=8.5e-06 Score=91.75 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=65.4
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |.+.|.. ++..+|++++|||+.+. +..++. .+.+ ..+... ..+++|+|+||+|+++..
T Consensus 125 PGH~~fi~~m~~------g~~~~D~alLVVda~~g-~~~~qT-~ehl-~i~~~l--------gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 125 PGHDILMATMLN------GAAVMDAALLLIAANES-CPQPQT-SEHL-AAVEIM--------KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred CCHHHHHHHHHH------HHhhCCEEEEEEECCCC-ccchhh-HHHH-HHHHHc--------CCCcEEEEEecccccCHH
Confidence 7753 4444333 45679999999999873 112222 2222 222221 345789999999998643
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.....+.++ +.+.+.... ....++++||++|.|++.|+++|.+.++.
T Consensus 188 ~~~~~~~ei-~~~l~~~~~-~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEI-RNFVKGTIA-DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHH-HHHHHhhcc-CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 322222222 222222111 13459999999999999999999976654
No 232
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.28 E-value=1e-05 Score=83.48 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=32.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
+...+|.+++|+|+.+.. .. ..+.++..+.+ .+.|+++|+||+|+...
T Consensus 84 ~l~~aD~~IlVvd~~~g~--~~--~~~~~~~~~~~---------~~~P~iivvNK~D~~~a 131 (237)
T cd04168 84 SLSVLDGAILVISAVEGV--QA--QTRILWRLLRK---------LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHhCeEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECccccCC
Confidence 445689999999998732 22 22344454443 34689999999998754
No 233
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.28 E-value=1.6e-05 Score=92.07 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=83.8
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceeccee--cceecccccccccCcch-HHHH
Q 005977 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRN--YGQVKNEVAENLIPDFD-FDRV 277 (666)
Q Consensus 202 G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~--ygkv~~~~~q~~iP~~d-f~~~ 277 (666)
-...+++|.+|+|||+| +++.+.++...+. .+.+ .-...+.... +..+. -+..|++. |...
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~----------~GIT-~~ig~~~v~~~~~~~i~----~iDTPGhe~F~~~ 151 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA----------GGIT-QHIGAYHVENEDGKMIT----FLDTPGHEAFTSM 151 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccC----------Ccee-ecceEEEEEECCCcEEE----EEECCCCcchhhH
Confidence 45567799999996555 9887766432110 0000 0000111110 00110 11237764 4333
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH
Q 005977 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
+.+ ....+|++++|+|+.+ |..+... +. +..+.. .+.|+|+++||+|+... ....+..+
T Consensus 152 r~r------ga~~aDiaILVVda~d--gv~~qT~-e~-i~~~~~---------~~vPiIVviNKiDl~~~--~~e~v~~~ 210 (587)
T TIGR00487 152 RAR------GAKVTDIVVLVVAADD--GVMPQTI-EA-ISHAKA---------ANVPIIVAINKIDKPEA--NPDRVKQE 210 (587)
T ss_pred HHh------hhccCCEEEEEEECCC--CCCHhHH-HH-HHHHHH---------cCCCEEEEEECcccccC--CHHHHHHH
Confidence 322 4567999999999987 4344322 12 222222 34689999999999542 22334444
Q ss_pred HHHHH---HhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 358 VRHRA---KAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~---k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
++... ..++. ...++++||++|.|+++|++.|..
T Consensus 211 L~~~g~~~~~~~~--~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 211 LSEYGLVPEDWGG--DTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHhhhhHHhcCC--CceEEEEECCCCCChHHHHHhhhh
Confidence 33211 11111 124899999999999999988853
No 234
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.27 E-value=1.1e-05 Score=93.46 Aligned_cols=105 Identities=22% Similarity=0.319 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|+++....|... ....+|++++|+|+.+ |..+.. ...+..++. .+.|+|+|+||+|+.+...
T Consensus 77 pG~e~f~~l~~~-----~~~~aD~~IlVvD~~~--g~~~qt--~e~i~~l~~---------~~vpiIVv~NK~Dl~~~~~ 138 (590)
T TIGR00491 77 PGHEAFTNLRKR-----GGALADLAILIVDINE--GFKPQT--QEALNILRM---------YKTPFVVAANKIDRIPGWR 138 (590)
T ss_pred CCcHhHHHHHHH-----HHhhCCEEEEEEECCc--CCCHhH--HHHHHHHHH---------cCCCEEEEEECCCccchhh
Confidence 776533333322 3467999999999987 323322 122233332 3468999999999985321
Q ss_pred C-------------hHHH--------HHHHHHHHHhCCCC-----------CCCeEEEEecccCcchhhHHHHHHh
Q 005977 350 S-------------PTRL--------DRWVRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 350 ~-------------~~~L--------~~wl~~~~k~~g~~-----------~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. ...+ ...+..+ .+.|+. ....++++||++|.|+++|+..|..
T Consensus 139 ~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l-~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 139 SHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKL-HEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred hccCchHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 0000 0001111 122211 1235899999999999999988753
No 235
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.27 E-value=1.3e-06 Score=85.65 Aligned_cols=59 Identities=29% Similarity=0.401 Sum_probs=45.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+|.++|.+|||||||||+|++..... .++..+|+|+++..+. +...+.|+||||+...
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLA----RTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYA 83 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcc----cccCCCCceeEEEEEe--cCCeEEEeCCCCCCCc
Confidence 579999999999999999999753111 2357789998865544 3467899999997643
No 236
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.26 E-value=1.1e-06 Score=83.88 Aligned_cols=57 Identities=32% Similarity=0.299 Sum_probs=40.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CC-ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PA-KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~-~~~liDTPGi~~ 462 (666)
+|++||.+|||||||+|+|.+... .++..||+|++.......+ +. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc------cccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 689999999999999999986432 3457788887643211112 22 678999999853
No 237
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.26 E-value=1.3e-06 Score=94.53 Aligned_cols=59 Identities=32% Similarity=0.277 Sum_probs=45.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-C-CceEEEECCCCCCCc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-P-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~-~~~~liDTPGi~~~~ 464 (666)
+|.+||.||||||||||+|.... ..++.+|+||++...-...+ + ..+.++||||+....
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga 220 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCC
Confidence 79999999999999999998642 23478999999875433223 2 368999999997543
No 238
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.26 E-value=1.1e-06 Score=95.76 Aligned_cols=58 Identities=34% Similarity=0.335 Sum_probs=45.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~ 462 (666)
.+|.++|+||||||||+|+|++.. . .++..||+|++.......++ ..+.++||||+..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~-----~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-V-----YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-e-----eeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 579999999999999999999764 2 23578999998765443343 3678999999953
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.25 E-value=3.8e-06 Score=88.36 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=47.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|||+.+. ..+. .+.++..+.. .++|+++++||+|+.... . ...+..+...++
T Consensus 84 ~l~~aD~ailVVDa~~g--~~~~--t~~~~~~~~~---------~~~p~ivviNK~D~~~a~--~---~~~~~~l~~~l~ 145 (270)
T cd01886 84 SLRVLDGAVAVFDAVAG--VEPQ--TETVWRQADR---------YNVPRIAFVNKMDRTGAD--F---FRVVEQIREKLG 145 (270)
T ss_pred HHHHcCEEEEEEECCCC--CCHH--HHHHHHHHHH---------cCCCEEEEEECCCCCCCC--H---HHHHHHHHHHhC
Confidence 55678999999999873 2222 3344454443 346899999999987532 1 222333333344
Q ss_pred CCCCCeEEEEecccC
Q 005977 367 APKLNGVYLVSARKD 381 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg 381 (666)
...+..++++|+..+
T Consensus 146 ~~~~~~~~Pisa~~~ 160 (270)
T cd01886 146 ANPVPLQLPIGEEDD 160 (270)
T ss_pred CCceEEEeccccCCC
Confidence 333566889998754
No 240
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.25 E-value=1.2e-06 Score=99.04 Aligned_cols=59 Identities=29% Similarity=0.262 Sum_probs=44.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
-+|.+||.||||||||||+|.+.. ..++.+|+||++...-...+ +..+.|+||||+...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak------pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK------PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC------ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 379999999999999999998642 23478999998865432222 236889999999743
No 241
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.25 E-value=1.7e-06 Score=99.47 Aligned_cols=62 Identities=32% Similarity=0.369 Sum_probs=45.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+||||||+||+|++.....+. +..|+||+- ..+.... +..+.+|||||+.....
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vs----s~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTD----AFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcccccccc----CCCCCceEE-EEEEEEECCceEEEEECCCCCcccc
Confidence 57999999999999999999987644332 234777764 3333223 34689999999998653
No 242
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.24 E-value=2e-05 Score=78.41 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=59.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.+|+|+|+.+... + ..+ +..++.+... . ...|+|||.||+||... ....+..+.|. +..+
T Consensus 76 ~~~ad~illVfD~t~~~S-f-~~~-~~w~~~i~~~------~-~~~piilVGNK~DL~~~~~v~~~~~~~~a----~~~~ 141 (189)
T cd04121 76 SRGAQGIILVYDITNRWS-F-DGI-DRWIKEIDEH------A-PGVPKILVGNRLHLAFKRQVATEQAQAYA----ERNG 141 (189)
T ss_pred hcCCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEECccchhccCCCHHHHHHHH----HHcC
Confidence 457999999999988532 1 122 2233333321 1 35689999999999643 23334445554 3444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 142 ~----~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 142 M----TFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred C----EEEEecCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988753
No 243
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.24 E-value=1.6e-06 Score=87.71 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=39.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
+|+++|.+|+||||++|+|++......+ ....+.|..+......+. ..+.+|||||+..+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG----SSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec----cccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 6899999999999999999988765432 122345555544433333 3788999999976654
No 244
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.22 E-value=2.6e-05 Score=78.40 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ......+.+.. ...|++||+||+||.......+. ..| .+..+
T Consensus 64 ~~~~ad~~ilV~D~t~~~S--~~~i-~~w~~~i~~~~-------~~~piilvgNK~Dl~~~~v~~~~-~~~----~~~~~ 128 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVT--YKNV-PNWHRDLVRVC-------ENIPIVLCGNKVDVKDRKVKAKS-ITF----HRKKN 128 (200)
T ss_pred HhcCCCEEEEEEECCChHH--HHHH-HHHHHHHHHhC-------CCCCEEEEEECcccccccCCHHH-HHH----HHHcC
Confidence 3457899999999988421 1112 22233333321 34689999999999654332222 223 23333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. .++.+||++|.|+++++..|.+.+
T Consensus 129 ~----~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 129 L----QYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 389999999999999999987643
No 245
>PRK04213 GTP-binding protein; Provisional
Probab=98.22 E-value=1.5e-06 Score=85.97 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=43.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.. . .++..||+|++...+. +. .+.++||||+.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~-~-----~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK-V-----RVGKRPGVTRKPNHYD--WG-DFILTDLPGFG 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCceeeCceEEe--ec-ceEEEeCCccc
Confidence 579999999999999999998653 2 2357889998876554 33 68999999973
No 246
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.22 E-value=3.4e-06 Score=93.98 Aligned_cols=57 Identities=28% Similarity=0.188 Sum_probs=44.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~ 462 (666)
.|.+||.||||||||||+|++.. ..+++.|+||+.+......+ ...+.++||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak------~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK------PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC------CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 79999999999999999999653 23468999999865432222 34789999999975
No 247
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.20 E-value=3.6e-06 Score=79.49 Aligned_cols=62 Identities=31% Similarity=0.340 Sum_probs=45.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|+|||||+|+|++..... .+..|+||++......... ..+.++||||+.....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVI-----VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccee-----ccCCCCCccCceeeEEEECCeeEEEEECCCCccccc
Confidence 479999999999999999999764332 2467888887654332222 3578999999986643
No 248
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.1e-06 Score=98.46 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=47.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~~~ 466 (666)
.++.++|.||||||||+|+|++.. . .++++||+|.+..+-.... +..+.++|.||+.+-.-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q-----~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-Q-----KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-c-----eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 368999999999999999999864 2 3469999998876543222 235799999999865543
No 249
>PRK11058 GTPase HflX; Provisional
Probab=98.19 E-value=1.6e-06 Score=96.86 Aligned_cols=57 Identities=30% Similarity=0.238 Sum_probs=43.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~~ 462 (666)
.|++||.||||||||+|+|++.... ++..||+|++...-...++. .+.++||||+..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVY------AADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcee------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 6899999999999999999975422 35789999987543332332 678999999953
No 250
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.19 E-value=1.3e-05 Score=79.90 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=57.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC--------hHH-HHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS--------PTR-LDRWV 358 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~--------~~~-L~~wl 358 (666)
...+|++++|.|. ++ ...+..+++.+.. ..+|+++|+||+|+...... .+. ++...
T Consensus 78 ~~~~d~~l~v~~~-~~-----~~~d~~~~~~l~~---------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 78 FSEYDFFIIISST-RF-----SSNDVKLAKAIQC---------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred ccCcCEEEEEeCC-CC-----CHHHHHHHHHHHH---------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHH
Confidence 4578888887543 22 2334555566654 23589999999999743221 112 22221
Q ss_pred ---HHHHHhCCCCCCCeEEEEecc--cCcchhhHHHHHHhhcCC
Q 005977 359 ---RHRAKAGGAPKLNGVYLVSAR--KDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 359 ---~~~~k~~g~~~~~~V~~VSAk--kg~Gv~eLl~~I~~~l~~ 397 (666)
.......+.. ...||++|+. .++++..|.+.|...++.
T Consensus 143 ~~~~~~~~~~~~~-~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 143 DNCLENLQEAGVS-EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHcCCC-CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1222232332 3469999998 689999999999877664
No 251
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.18 E-value=3.3e-05 Score=76.44 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---------HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|.|+.+... + ..+...+...+... . ...|++||.||.||.......+.+ ...
T Consensus 71 ~~~~a~~~ilvydit~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 141 (191)
T cd01875 71 SYPQTNVFIICFSIASPSS-Y-ENVRHKWHPEVCHH------C-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQ 141 (191)
T ss_pred hccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh------C-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHH
Confidence 3457999999999988532 1 11111222223221 1 346999999999995432100000 111
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+.+.+..+ ...++.+||++|.|++++++.|.+.
T Consensus 142 ~~~~a~~~~---~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 142 GGALAKQIH---AVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHHHHHHcC---CcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 222233344 1248899999999999999988754
No 252
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.17 E-value=2.3e-06 Score=79.89 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=41.8
Q ss_pred EEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 402 WVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 402 ~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
.++|.+|||||||+|+|++..... .+..|++|++........ +..+.++||||+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-----VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-----ecCCCCceeCceeEEEEECCeEEEEEECCCCCCch
Confidence 378999999999999999764222 256788998765433222 2357899999997543
No 253
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.16 E-value=3.3e-05 Score=80.69 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=32.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
++..+|.+++|+|+.+.. .. ....++..+.. .+.|+++|+||+|+...
T Consensus 84 ~l~~aD~~i~Vvd~~~g~--~~--~~~~~~~~~~~---------~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 84 ALRAADAALVVVSAQSGV--EV--GTEKLWEFADE---------AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECCccCCC
Confidence 445689999999998743 22 12334444433 34589999999998754
No 254
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.16 E-value=3e-06 Score=80.72 Aligned_cols=57 Identities=32% Similarity=0.394 Sum_probs=41.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|++... .++..|++|++...-.... ...+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP------EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999997542 2346788887764322111 13689999999853
No 255
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.15 E-value=3.6e-05 Score=85.65 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.. .+. ..+ .+..+... ..+++++|+||+|+++.......... ++.+.+...
T Consensus 105 ~~~~~D~~llVVDa~~~~~-~~~-t~~-~l~~l~~~--------~i~~iiVVlNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 172 (411)
T PRK04000 105 GAALMDGAILVIAANEPCP-QPQ-TKE-HLMALDII--------GIKNIVIVQNKIDLVSKERALENYEQ-IKEFVKGTV 172 (411)
T ss_pred HHhhCCEEEEEEECCCCCC-Chh-HHH-HHHHHHHc--------CCCcEEEEEEeeccccchhHHHHHHH-HHHHhcccc
Confidence 4467899999999997421 121 112 22333321 23578999999999865432111121 122221111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. ....++++||++|.|+++|++.|.+.++.
T Consensus 173 ~-~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 173 A-ENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred C-CCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 0 12348999999999999999999886543
No 256
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.14 E-value=2.5e-05 Score=90.75 Aligned_cols=168 Identities=17% Similarity=0.133 Sum_probs=89.4
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHH------HHHhhhcCcceeecceecceecceecccccccccCcc-hHHH
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKA------REAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDR 276 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a------~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~-df~~ 276 (666)
.+++|..++|||+| ++|..+.-.+..+.... -..+++.+.+..+..++ . .|+..... -+..|++ +|..
T Consensus 4 IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~-v-~~~~~kin--lIDTPGh~DF~~ 79 (594)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTA-I-RYNGTKIN--IVDTPGHADFGG 79 (594)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEE-E-EECCEEEE--EEECCCHHHHHH
Confidence 35799999997766 88886532211111000 00112233444443322 1 12211100 0123766 3554
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHH
Q 005977 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+.+ ++..+|.+++|||+.+ |..+. .+.++..+.. .+.|+|+|+||+|+..... ..+..
T Consensus 80 ev~~------~l~~aD~alLVVDa~~--G~~~q--T~~~l~~a~~---------~~ip~IVviNKiD~~~a~~--~~v~~ 138 (594)
T TIGR01394 80 EVER------VLGMVDGVLLLVDASE--GPMPQ--TRFVLKKALE---------LGLKPIVVINKIDRPSARP--DEVVD 138 (594)
T ss_pred HHHH------HHHhCCEEEEEEeCCC--CCcHH--HHHHHHHHHH---------CCCCEEEEEECCCCCCcCH--HHHHH
Confidence 4433 4567899999999987 43332 2333343333 3457899999999864321 11222
Q ss_pred HHHHHHHhCCCCC---CCeEEEEecccCc----------chhhHHHHHHhhcCC
Q 005977 357 WVRHRAKAGGAPK---LNGVYLVSARKDL----------GVRNLLAFIKELAGP 397 (666)
Q Consensus 357 wl~~~~k~~g~~~---~~~V~~VSAkkg~----------Gv~eLl~~I~~~l~~ 397 (666)
-+..++...+... .-.++++||++|+ |+..|++.|.+++|.
T Consensus 139 ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 139 EVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 2222222222100 0138999999997 799999999988764
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.13 E-value=2.5e-06 Score=77.29 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=59.9
Q ss_pred eeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcchH----HH-
Q 005977 206 AGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDF----DR- 276 (666)
Q Consensus 206 a~vGrpNvg~t-lLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~df----~~- 276 (666)
+++|+||+||| ++|.|.+.+... ......|++...|+.+......+. .|++.- ..
T Consensus 3 ~iiG~~~~GKSTlin~l~~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~ 66 (116)
T PF01926_consen 3 AIIGRPNVGKSTLINALTGKKLAK----------------VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND 66 (116)
T ss_dssp EEEESTTSSHHHHHHHHHTSTSSE----------------ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH
T ss_pred EEECCCCCCHHHHHHHHhcccccc----------------ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH
Confidence 46899999955 559999865322 222244555555544332222222 265521 11
Q ss_pred -HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeC
Q 005977 277 -VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTK 341 (666)
Q Consensus 277 -~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNK 341 (666)
.+...+.+ .+..+|++++|+|+.+. ....+..+++.|+ ..+|+++|+||
T Consensus 67 ~~~~~~~~~--~~~~~d~ii~vv~~~~~----~~~~~~~~~~~l~----------~~~~~i~v~NK 116 (116)
T PF01926_consen 67 GKEIRKFLE--QISKSDLIIYVVDASNP----ITEDDKNILRELK----------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHH--HHCTESEEEEEEETTSH----SHHHHHHHHHHHH----------TTSEEEEEEES
T ss_pred HHHHHHHHH--HHHHCCEEEEEEECCCC----CCHHHHHHHHHHh----------cCCCEEEEEcC
Confidence 12222333 34779999999997661 2234556666663 34689999999
No 258
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.13 E-value=3.2e-06 Score=91.33 Aligned_cols=58 Identities=33% Similarity=0.275 Sum_probs=43.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~ 463 (666)
+|.+||.||||||||+|+|.... ..++..|+||+....-...++ ..+.|+||||+...
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~------~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAK------PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCC------ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 79999999999999999998643 234688999987543222232 36899999999743
No 259
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.12 E-value=2.2e-06 Score=80.37 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=40.5
Q ss_pred EEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 403 vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
++|.+|||||||+|+|++.. . .++..||+|++.......++ ..+.++||||+....
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~-----~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-Q-----KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-c-----cccCCCCcccccceEEEeeCCeEEEEEECCCccccC
Confidence 57999999999999998753 2 23567999988643222232 367899999996543
No 260
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.12 E-value=2.5e-05 Score=76.83 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=55.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-----------ChHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-----------SPTRLDR 356 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-----------~~~~L~~ 356 (666)
...++.++++.|+.+.. ++ ..+...+...+... . ...|+|+|+||+|+..... .......
T Consensus 70 ~~~a~~~llv~~i~~~~-s~-~~~~~~~~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (187)
T cd04129 70 YSKAHVILIGFAVDTPD-SL-ENVRTKWIEEVRRY------C-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR 140 (187)
T ss_pred cCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHh------C-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH
Confidence 45789999999987643 11 11112223333321 1 3478999999999864221 1112222
Q ss_pred HHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 357 WVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+..+ ...++.+||++|.|++++++.+.+.
T Consensus 141 ----~~~~~~---~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 141 ----VAKEIG---AKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ----HHHHhC---CcEEEEccCCCCCCHHHHHHHHHHH
Confidence 234444 2348999999999999999988753
No 261
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.11 E-value=5e-06 Score=77.86 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=42.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
+|.++|.+|+|||||+|+|++..... ..+..+|+|.....+. ......++||||+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLA----RTSKTPGKTQLINFFN--VNDKFRLVDLPGYGYA 58 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcee----eecCCCCcceeEEEEE--ccCeEEEecCCCcccc
Confidence 47899999999999999999533222 1256778887665443 4457899999998654
No 262
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.10 E-value=6e-06 Score=77.05 Aligned_cols=62 Identities=34% Similarity=0.395 Sum_probs=43.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
..+.++|.+|+|||||+|+|++..... .+..+++|+.......... ..+.++||||+..+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI-----VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe-----ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchH
Confidence 478999999999999999999764322 2355667766544321111 3578999999876543
No 263
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.09 E-value=1.6e-05 Score=77.90 Aligned_cols=96 Identities=23% Similarity=0.260 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...+++.|+||||+.+.. .-.+....+.+.+.. ... ...|+++++||.|+.... ....+...+. ...+.
T Consensus 78 y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~----~~~--~~~piLIl~NK~D~~~~~-~~~~i~~~l~--l~~l~ 146 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPE--RLQEAKEELKELLND----PEL--KDIPILILANKQDLPDAM-SEEEIKEYLG--LEKLK 146 (175)
T ss_dssp GHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTS----GGG--TTSEEEEEEESTTSTTSS-THHHHHHHTT--GGGTT
T ss_pred eccccceeEEEEecccce--eecccccchhhhcch----hhc--ccceEEEEeccccccCcc-hhhHHHhhhh--hhhcc
Confidence 456789999999999853 112222333333322 111 357999999999986533 2233333221 01121
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
..+.-.|+.+||.+|.|+.+.++.|.+
T Consensus 147 ~~~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp SSSCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cCCceEEEeeeccCCcCHHHHHHHHHh
Confidence 112335889999999999999998875
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.09 E-value=1.9e-05 Score=73.29 Aligned_cols=138 Identities=21% Similarity=0.294 Sum_probs=90.3
Q ss_pred eeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHH-HHHHHhc
Q 005977 206 AGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDR-VIATRLM 283 (666)
Q Consensus 206 a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~-~L~~~l~ 283 (666)
+.||+-..|+++| +.+.|.-. --+|-|| ..|+. ...+..|+.-|.+ ...+.+.
T Consensus 5 ~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------------------ve~~d----~~~IDTPGEy~~~~~~Y~aL~ 59 (148)
T COG4917 5 AFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------------------VEFND----KGDIDTPGEYFEHPRWYHALI 59 (148)
T ss_pred EEecccccCchhHHHHhhcchh--hhcccce-------------------eeccC----ccccCCchhhhhhhHHHHHHH
Confidence 5689999998888 65555531 1222232 22211 1123346655544 3334444
Q ss_pred CcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 005977 284 KPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 284 rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k 363 (666)
- ...++|++++|..+.|+...+|+... .. ..+|+|-|+||+||.. ....++.+.|+ .
T Consensus 60 t--t~~dadvi~~v~~and~~s~f~p~f~--------~~--------~~k~vIgvVTK~DLae-d~dI~~~~~~L----~ 116 (148)
T COG4917 60 T--TLQDADVIIYVHAANDPESRFPPGFL--------DI--------GVKKVIGVVTKADLAE-DADISLVKRWL----R 116 (148)
T ss_pred H--HhhccceeeeeecccCccccCCcccc--------cc--------cccceEEEEecccccc-hHhHHHHHHHH----H
Confidence 4 57899999999999998877775321 11 2346999999999984 22345566675 4
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.| ..+||.+|+....|+++|+++|...
T Consensus 117 eaG---a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 117 EAG---AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HcC---CcceEEEeccCcccHHHHHHHHHhh
Confidence 456 4569999999999999999998754
No 265
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.08 E-value=6.4e-05 Score=73.82 Aligned_cols=91 Identities=23% Similarity=0.176 Sum_probs=56.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++|+|.|+.+... + ..+...+...+++. . ...|+|||.||+||... ......
T Consensus 69 ~~~~a~~~ilvfdit~~~S-f-~~~~~~w~~~i~~~------~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e 139 (178)
T cd04131 69 CYPDSDAVLICFDISRPET-L-DSVLKKWRGEIQEF------C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQ 139 (178)
T ss_pred hcCCCCEEEEEEECCChhh-H-HHHHHHHHHHHHHH------C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHH
Confidence 4568999999999987532 2 11112223333332 1 34689999999999541 122222
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcc-hhhHHHHHHh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKE 393 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-v~eLl~~I~~ 393 (666)
..+ +.++.+. ...+.+||++|.+ +++++..+..
T Consensus 140 ~~~----~a~~~~~---~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 140 GCA----IAKQLGA---EIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHH----HHHHhCC---CEEEECccCcCCcCHHHHHHHHHH
Confidence 333 3445552 2378899999995 9999988765
No 266
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.07 E-value=8e-05 Score=76.75 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|.|+.+... +. .+...+...+.+. . ...|+|||+||+||-.. ......
T Consensus 81 ~~~~ad~vIlVyDit~~~S-f~-~~~~~w~~~i~~~------~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 81 CYSDSDAVLLCFDISRPET-VD-SALKKWKAEIMDY------C-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ 151 (232)
T ss_pred HcCCCcEEEEEEECCChHH-HH-HHHHHHHHHHHHh------C-CCCCEEEEEECcccccccchhhhhccccCCcCCHHH
Confidence 4567999999999987531 11 1112222333321 1 34689999999998531 122233
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCc-chhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~-Gv~eLl~~I~~~ 394 (666)
.+.| .++.+. ...+.+||++|. |+++++..+...
T Consensus 152 ~~~~----a~~~~~---~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 152 GCAL----AKQLGA---EVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHH----HHHcCC---CEEEEccCCcCCcCHHHHHHHHHHH
Confidence 3333 455553 236789999997 899999887643
No 267
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.07 E-value=3.8e-05 Score=75.54 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-----------CChHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-----------VSPTRLD 355 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-----------~~~~~L~ 355 (666)
...+++.+|+|.|+.+... + ..+.+..+..++.. . .+.|+|||.||+||.+.. ...+...
T Consensus 69 ~~~~a~~~ilvyd~~~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~ 139 (176)
T cd04133 69 SYRGADVFVLAFSLISRAS-Y-ENVLKKWVPELRHY------A-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGE 139 (176)
T ss_pred hcCCCcEEEEEEEcCCHHH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHH
Confidence 4567999999999988542 1 11212222333321 1 356899999999996532 2223334
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.| .+..+. ...+-+||++|.|++++++.+.+.
T Consensus 140 ~~----a~~~~~---~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 140 EL----RKQIGA---AAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred HH----HHHcCC---CEEEECCCCcccCHHHHHHHHHHH
Confidence 44 334442 237899999999999999988764
No 268
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.07 E-value=6.6e-06 Score=77.51 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=39.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi 460 (666)
.|.++|.+|||||||+|+|++.... .......+|+|.+.......+ ...+.++||||.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~ 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETD---RLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccc---cchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence 5789999999999999999864311 111123567787754332222 236789999996
No 269
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=5.8e-06 Score=84.25 Aligned_cols=83 Identities=31% Similarity=0.422 Sum_probs=53.1
Q ss_pred CcchhhHHHHHHhhcCCC---ccEEEEccCCCChhHHHHhhhccccceeeccccc--CCCCceeEEEEEeeEe-----CC
Q 005977 381 DLGVRNLLAFIKELAGPR---GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRIGGIL-----PA 450 (666)
Q Consensus 381 g~Gv~eLl~~I~~~l~~~---~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S--~~PGTT~~~~~~~~~l-----~~ 450 (666)
-.|++.+++.+...+-.. -+|||||.+|.|||||||+|+..+....+....+ +.|-|| .+..+...+ .-
T Consensus 26 yvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~-eik~~thvieE~gVkl 104 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT-EIKSITHVIEEKGVKL 104 (336)
T ss_pred cccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceE-EEEeeeeeeeecceEE
Confidence 358888888886543222 4899999999999999999998765543222222 334443 222221111 12
Q ss_pred ceEEEECCCCCCCc
Q 005977 451 KAKLYDTPGLLHPH 464 (666)
Q Consensus 451 ~~~liDTPGi~~~~ 464 (666)
+..++|||||...-
T Consensus 105 kltviDTPGfGDqI 118 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQI 118 (336)
T ss_pred EEEEecCCCccccc
Confidence 56889999998543
No 270
>PRK10218 GTP-binding protein; Provisional
Probab=98.06 E-value=3.5e-05 Score=89.61 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=63.1
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|...+.. .+..+|.+++|+|+.+ |..+. .+.++..+.. .+.|+|+|+||+|+....
T Consensus 76 PG~~df~~~v~~------~l~~aDg~ILVVDa~~--G~~~q--t~~~l~~a~~---------~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 76 PGHADFGGEVER------VMSMVDSVLLVVDAFD--GPMPQ--TRFVTKKAFA---------YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred CCcchhHHHHHH------HHHhCCEEEEEEeccc--CccHH--HHHHHHHHHH---------cCCCEEEEEECcCCCCCc
Confidence 665 35444433 4567999999999987 32222 2333333332 345789999999986432
Q ss_pred CChHHHHHHHHHHHHhCCCCC---CCeEEEEecccCc----------chhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPK---LNGVYLVSARKDL----------GVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~---~~~V~~VSAkkg~----------Gv~eLl~~I~~~l~~ 397 (666)
. ...+... ..++..++... --.|+++||.+|+ |+..|++.|.+++|.
T Consensus 137 ~-~~vl~ei-~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 137 P-DWVVDQV-FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred h-hHHHHHH-HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 2 1222222 22222222100 0128999999998 588999999888764
No 271
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.06 E-value=3.3e-06 Score=80.70 Aligned_cols=54 Identities=33% Similarity=0.380 Sum_probs=39.2
Q ss_pred EEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCC
Q 005977 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLH 462 (666)
Q Consensus 403 vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~ 462 (666)
++|.+|||||||+|+|++... .++..|+||++.......+ ...+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc------cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999997642 2256788887754322222 34678999999853
No 272
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.05 E-value=8e-06 Score=97.27 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=46.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
.+|.++|.||||||||+|+|++... .++++||+|.+........+ ..+.++||||+....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC------ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 4799999999999999999987542 24689999998665433232 367899999997644
No 273
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.05 E-value=8.8e-05 Score=73.31 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=56.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|.|+.+.. ++ ..+...+.+.++.. . ...|+|||.||+||... ......
T Consensus 73 ~~~~ad~~ilvyDit~~~-Sf-~~~~~~w~~~i~~~------~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 73 SYPDSDAVLICFDISRPE-TL-DSVLKKWKGEIQEF------C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHHHHH------C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 456799999999998753 11 11112223333332 1 34689999999998531 122233
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcc-hhhHHHHHHh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKE 393 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-v~eLl~~I~~ 393 (666)
.+.| .++.+. ...+.+||++|.| +++++..+..
T Consensus 144 ~~~~----a~~~~~---~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANM----AKQIGA---ATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHH----HHHcCC---CEEEECCcCCCCCCHHHHHHHHHH
Confidence 3333 344552 2378899999998 9999987764
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.03 E-value=5.7e-05 Score=77.26 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=46.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH-HHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH-RAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~-~~k~~ 365 (666)
.+..+|+|++|+|+..... . .+..++..+... +.+.+|+|+||+|++........+..-++. +....
T Consensus 100 ~ak~aDvVllviDa~~~~~--~--~~~~i~~~l~~~--------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~ 167 (225)
T cd01882 100 IAKVADLVLLLIDASFGFE--M--ETFEFLNILQVH--------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV 167 (225)
T ss_pred HHHhcCEEEEEEecCcCCC--H--HHHHHHHHHHHc--------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh
Confidence 3466899999999986332 1 233455555432 222355699999998543322222222222 22122
Q ss_pred CCCCCCeEEEEecccCc
Q 005977 366 GAPKLNGVYLVSARKDL 382 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~ 382 (666)
.+ ...|+++||++.-
T Consensus 168 -~~-~~ki~~iSa~~~~ 182 (225)
T cd01882 168 -YQ-GAKLFYLSGIVHG 182 (225)
T ss_pred -CC-CCcEEEEeeccCC
Confidence 12 5679999999873
No 275
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.03 E-value=2.7e-06 Score=88.47 Aligned_cols=80 Identities=31% Similarity=0.270 Sum_probs=49.0
Q ss_pred cchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+++.++.+.+.-.-.++.+++++|.+|+|||||||+|+......+..+-+ ..+=+|+....+. .....|.||||+-
T Consensus 23 e~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~-~t~~~~~~~~~~~---~~~l~lwDtPG~g 98 (296)
T COG3596 23 ERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV-GTDITTRLRLSYD---GENLVLWDTPGLG 98 (296)
T ss_pred HHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc-CCCchhhHHhhcc---ccceEEecCCCcc
Confidence 33444444333223356789999999999999999999665554432111 1111333333332 3578999999998
Q ss_pred CCcc
Q 005977 462 HPHL 465 (666)
Q Consensus 462 ~~~~ 465 (666)
....
T Consensus 99 dg~~ 102 (296)
T COG3596 99 DGKD 102 (296)
T ss_pred cchh
Confidence 6543
No 276
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.02 E-value=2.6e-05 Score=92.23 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=47.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
+...+|++++|+|+.+.. .+. ...++..+.. .+.|+++|+||+|+.... +...+..+...++
T Consensus 95 ~l~~~D~~ilVvda~~g~--~~~--~~~~~~~~~~---------~~~p~ivviNK~D~~~~~-----~~~~~~~i~~~l~ 156 (689)
T TIGR00484 95 SLRVLDGAVAVLDAVGGV--QPQ--SETVWRQANR---------YEVPRIAFVNKMDKTGAN-----FLRVVNQIKQRLG 156 (689)
T ss_pred HHHHhCEEEEEEeCCCCC--Chh--HHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 456789999999998732 222 2344444443 346899999999998543 1222233333334
Q ss_pred CCCCCeEEEEecccCc
Q 005977 367 APKLNGVYLVSARKDL 382 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~ 382 (666)
...+..++++|+.++.
T Consensus 157 ~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 157 ANAVPIQLPIGAEDNF 172 (689)
T ss_pred CCceeEEeccccCCCc
Confidence 3334457788877663
No 277
>PRK12739 elongation factor G; Reviewed
Probab=98.00 E-value=2.8e-05 Score=91.94 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=48.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.+. ... -.+.++..+.. .+.|+|+++||+|+.... +...+.++...++
T Consensus 93 al~~~D~~ilVvDa~~g--~~~--qt~~i~~~~~~---------~~~p~iv~iNK~D~~~~~-----~~~~~~~i~~~l~ 154 (691)
T PRK12739 93 SLRVLDGAVAVFDAVSG--VEP--QSETVWRQADK---------YGVPRIVFVNKMDRIGAD-----FFRSVEQIKDRLG 154 (691)
T ss_pred HHHHhCeEEEEEeCCCC--CCH--HHHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 56779999999999873 222 23445555543 345889999999998644 2233333333344
Q ss_pred CCCCCeEEEEecccCc
Q 005977 367 APKLNGVYLVSARKDL 382 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~ 382 (666)
...+..++++|+..+.
T Consensus 155 ~~~~~~~iPis~~~~f 170 (691)
T PRK12739 155 ANAVPIQLPIGAEDDF 170 (691)
T ss_pred CCceeEEecccccccc
Confidence 3223456777776553
No 278
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.99 E-value=1.1e-05 Score=83.07 Aligned_cols=58 Identities=29% Similarity=0.319 Sum_probs=42.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
++.++|.+|+|||||+|+|.+... .++..|+||.+...-...+ +..+.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~------~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS------EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------cccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 688999999999999999997541 2357899997765422212 346789999998643
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.98 E-value=7e-06 Score=90.87 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=31.1
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEE
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILR 443 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~ 443 (666)
+|.+||.||||||||+|+|++... .++++|+||++...
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~------~~~~y~f~t~~p~~ 40 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADV------EIANYPFTTIDPNV 40 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc------cccCCCCcceeeee
Confidence 689999999999999999997532 33688999987543
No 280
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.97 E-value=6.3e-05 Score=77.04 Aligned_cols=96 Identities=22% Similarity=0.200 Sum_probs=53.7
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS- 347 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk- 347 (666)
|++. |...+.. +...+|.+++|+|+.... .+. .+.++..+.. .+.|+|+|+||+|++..
T Consensus 81 PG~~~f~~~~~~------~l~~aD~~ilVvD~~~g~--~~~--t~~~l~~~~~---------~~~p~ilviNKiD~~~~e 141 (222)
T cd01885 81 PGHVDFSSEVTA------ALRLCDGALVVVDAVEGV--CVQ--TETVLRQALK---------ERVKPVLVINKIDRLILE 141 (222)
T ss_pred CCccccHHHHHH------HHHhcCeeEEEEECCCCC--CHH--HHHHHHHHHH---------cCCCEEEEEECCCcchhh
Confidence 6654 4444333 456799999999998732 222 1223332222 23579999999998622
Q ss_pred -----CCChHHHHHHHHHHH---HhC-------------CC-CCCCeEEEEecccCcch
Q 005977 348 -----QVSPTRLDRWVRHRA---KAG-------------GA-PKLNGVYLVSARKDLGV 384 (666)
Q Consensus 348 -----~~~~~~L~~wl~~~~---k~~-------------g~-~~~~~V~~VSAkkg~Gv 384 (666)
.....++...+.+.. ... .+ |...+|.+-||+.||+.
T Consensus 142 ~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 142 LKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred hcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 211223333332221 111 01 22346999999999986
No 281
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.96 E-value=7.9e-06 Score=81.49 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=40.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~ 464 (666)
.+++++|.+|||||||||+|++......+.+++. ...||+....+.......+.++||||+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCceeeecCCCCCceEEeCCCCCccc
Confidence 4689999999999999999997532211111111 1224544333321112368999999998543
No 282
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.95 E-value=5.7e-05 Score=76.13 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=50.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC------CChHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ------VSPTRLDRWVRH 360 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~------~~~~~L~~wl~~ 360 (666)
....+|.+++|+|+.+... . . ...++..+.. ...|+++|+||+|++..+ ....++.++++.
T Consensus 91 ~~~~aD~~llVvD~~~~~~--~-~-~~~~~~~~~~---------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 91 ALRLSDGVVLVVDVVEGVT--S-N-TERLIRHAIL---------EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred HHHhCCEEEEEEECCCCCC--H-H-HHHHHHHHHH---------cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 4457899999999987432 1 1 2222232221 236899999999987321 112334444443
Q ss_pred HH---HhCCC-------CCCCeEEEEecccCcchh
Q 005977 361 RA---KAGGA-------PKLNGVYLVSARKDLGVR 385 (666)
Q Consensus 361 ~~---k~~g~-------~~~~~V~~VSAkkg~Gv~ 385 (666)
+. +..+. |--.+|++.||+.+|+..
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 32 22221 223568899999999975
No 283
>PRK00007 elongation factor G; Reviewed
Probab=97.95 E-value=2.6e-05 Score=92.27 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=47.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|++++|||+.. |..+. .+.++..+.. .+.|+|+++||+|+.... +...+..+.+.++
T Consensus 95 al~~~D~~vlVvda~~--g~~~q--t~~~~~~~~~---------~~~p~iv~vNK~D~~~~~-----~~~~~~~i~~~l~ 156 (693)
T PRK00007 95 SLRVLDGAVAVFDAVG--GVEPQ--SETVWRQADK---------YKVPRIAFVNKMDRTGAD-----FYRVVEQIKDRLG 156 (693)
T ss_pred HHHHcCEEEEEEECCC--Ccchh--hHHHHHHHHH---------cCCCEEEEEECCCCCCCC-----HHHHHHHHHHHhC
Confidence 5567899999999987 32222 3445555544 345789999999998644 2233333334444
Q ss_pred CCCCCeEEEEecccC
Q 005977 367 APKLNGVYLVSARKD 381 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg 381 (666)
......++++||.++
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 322334677777766
No 284
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.94 E-value=1.8e-05 Score=72.53 Aligned_cols=56 Identities=30% Similarity=0.328 Sum_probs=41.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|+|||||+|+|+... ... +..|++|.+........+. .+.++||||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT-----EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC-----cCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 378999999999999999999765 222 4567888887653322332 4678999994
No 285
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.94 E-value=0.00011 Score=69.40 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.+++|.|..+... .+....+++.+... .....|++||.||.|+.. .....+....|. +..+
T Consensus 69 ~~~~~~~ii~fd~~~~~S---~~~~~~~~~~i~~~------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~----~~~~ 135 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEES---FENLKKWLEEIQKY------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFA----KELG 135 (162)
T ss_dssp HTTESEEEEEEETTBHHH---HHTHHHHHHHHHHH------STTTSEEEEEEETTTGGGGSSSCHHHHHHHH----HHTT
T ss_pred cccccccccccccccccc---cccccccccccccc------ccccccceeeeccccccccccchhhHHHHHH----HHhC
Confidence 456899999999987421 11112233333332 112479999999999986 444444445553 4444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. ..+.+||+++.|+.+++..+.+
T Consensus 136 ~----~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 136 V----PYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp S----EEEEEBTTTTTTHHHHHHHHHH
T ss_pred C----EEEEEECCCCCCHHHHHHHHHH
Confidence 3 2789999999999998887754
No 286
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.93 E-value=1.9e-05 Score=74.54 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=38.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
+++++|.+|||||||+|+|++..... +..|++|.+.......++. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------cCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999998754321 3567777665433222332 4679999994
No 287
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.93 E-value=5.9e-05 Score=87.55 Aligned_cols=92 Identities=26% Similarity=0.400 Sum_probs=53.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-------------hHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
....+|++++|+|+.+ |..+.. . ..+..+.. .+.|+++|+||+|+.+.... ...
T Consensus 91 ~~~~aD~~IlVvDa~~--g~~~qt-~-e~i~~~~~---------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 91 GGALADIAILVVDINE--GFQPQT-I-EAINILKR---------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred hHhhCCEEEEEEECCC--CCCHhH-H-HHHHHHHH---------cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 4467999999999987 322322 1 22233332 34689999999999743210 000
Q ss_pred --------HHHHHHHHHHhCCCC-----------CCCeEEEEecccCcchhhHHHHHH
Q 005977 354 --------LDRWVRHRAKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIK 392 (666)
Q Consensus 354 --------L~~wl~~~~k~~g~~-----------~~~~V~~VSAkkg~Gv~eLl~~I~ 392 (666)
+.....+ ....|+. ....++++||.+|.|+++|++.+.
T Consensus 158 v~~~f~~~l~ev~~~-L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 158 VQQELEEKLYELIGQ-LSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 0011111 1222321 123489999999999999888774
No 288
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.92 E-value=1.2e-05 Score=79.75 Aligned_cols=58 Identities=31% Similarity=0.295 Sum_probs=40.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-C-ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-A-KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~-~~~liDTPGi~~ 462 (666)
.+|.++|.+|||||||+|+|++.... +...+++|.+.......++ . .+.++||||+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc------cCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 58999999999999999999976421 2345666665443222222 2 678999999864
No 289
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.91 E-value=1.7e-05 Score=75.36 Aligned_cols=56 Identities=27% Similarity=0.256 Sum_probs=38.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe----CCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL----PAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l----~~~~~liDTPGi~ 461 (666)
.++++|.+|+|||||+|+|+..... ....+|+|.+........ +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 4789999999999999999865322 124567776653222112 2367899999964
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.90 E-value=1.9e-05 Score=86.41 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.+.+|+|+|.+|+|||||||+|.+-.....+.+.++ ...||.....++..--.++.+.|.||+..+..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 467999999999999999999986432222211111 12367777777643334899999999986654
No 291
>PTZ00099 rab6; Provisional
Probab=97.89 E-value=9.5e-05 Score=72.73 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
...++|++|+|+|+.+... + ..+..++ ..+.+.. ....|+|||+||+||... .........|. +..
T Consensus 49 ~~~~ad~~ilv~D~t~~~s-f-~~~~~w~-~~i~~~~------~~~~piilVgNK~DL~~~~~v~~~e~~~~~----~~~ 115 (176)
T PTZ00099 49 YIRDSAAAIVVYDITNRQS-F-ENTTKWI-QDILNER------GKDVIIALVGNKTDLGDLRKVTYEEGMQKA----QEY 115 (176)
T ss_pred HhCCCcEEEEEEECCCHHH-H-HHHHHHH-HHHHHhc------CCCCeEEEEEECcccccccCCCHHHHHHHH----HHc
Confidence 4567999999999987431 1 1222222 2222211 134578999999999642 22322333332 333
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+. .++.+||++|.|++++++.|.+.++
T Consensus 116 ~~----~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 116 NT----MFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CC----EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 2678999999999999999987654
No 292
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.89 E-value=0.00017 Score=78.79 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=47.5
Q ss_pred ceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcce-------eecceecce-ecceecccccccccCcc-
Q 005977 203 FTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVT-------VCARCHSLR-NYGQVKNEVAENLIPDF- 272 (666)
Q Consensus 203 ~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~-------~CqRC~rLr-~ygkv~~~~~q~~iP~~- 272 (666)
...++||+||+|+|| +|.|.+.+ +++...+.+-.....+...+ ++..|.-.+ .+.++.. +.+|+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l----vD~pGL~ 77 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF----VDIAGLV 77 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE----EECCCCC
Confidence 455779999999655 59999988 44444444410000000000 000111100 0001110 112442
Q ss_pred ---hHHHHHHHHhcCcccccccCEEEEEEecCC
Q 005977 273 ---DFDRVIATRLMKPSGNANAGVVVMVVDCVD 302 (666)
Q Consensus 273 ---df~~~L~~~l~rP~a~~~aDvVL~VVDa~D 302 (666)
+..+-|.+++.+ .+.++|++++|||++.
T Consensus 78 ~~a~~g~glg~~fL~--~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 78 KGASKGEGLGNQFLA--NIREVDAIVHVVRCFE 108 (364)
T ss_pred CCCChHHHHHHHHHH--HHHhCCEEEEEEeCCc
Confidence 334456666666 6789999999999963
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.88 E-value=2e-05 Score=86.59 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=58.2
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccce----------eecccccCCCC---ceeEEEEEe-----eE
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPG---TTLGILRIG-----GI 447 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~----------~~~lt~S~~PG---TT~~~~~~~-----~~ 447 (666)
++++.|.+....+..+.|+|..|+|||||||++++..... +..-..++.+| ||.+...++ ..
T Consensus 5 ~iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~ 84 (492)
T TIGR02836 5 DIYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN 84 (492)
T ss_pred hHHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe
Confidence 4677888777777788899999999999999999872221 01113468899 888865532 11
Q ss_pred e----CCceEEEECCCCCCCccc
Q 005977 448 L----PAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 448 l----~~~~~liDTPGi~~~~~~ 466 (666)
. ...++|+||+|+...+-.
T Consensus 85 ~~~~~~~~VrlIDcvG~~v~Gal 107 (492)
T TIGR02836 85 INEGTKFKVRLVDCVGYTVKGAL 107 (492)
T ss_pred ccCCCcccEEEEECCCcccCCCc
Confidence 2 257899999999977644
No 294
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.87 E-value=1.3e-05 Score=85.11 Aligned_cols=59 Identities=31% Similarity=0.357 Sum_probs=44.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
.+|.+||.||||||||+|+|.+... .+..+|.||+.++.-.... +..+.|+|+||+...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s------eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS------EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc------cccccCceecccccceEeecCceEEEEcCcccccC
Confidence 4899999999999999999997642 2357899998865422111 347899999999743
No 295
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00011 Score=82.53 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=81.4
Q ss_pred hcCcceeecceecceecceecccccccccCcc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHH
Q 005977 241 EKGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKL 319 (666)
Q Consensus 241 ~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L 319 (666)
+.++++--|.|.-.-.||+--.-. -+..|++ ||....++ ++..|+-+++|||+.. |-.++..... ..++
T Consensus 105 ERGITIkaQtasify~~~~~ylLN-LIDTPGHvDFs~EVsR------slaac~G~lLvVDA~q--GvqAQT~anf-~lAf 174 (650)
T KOG0462|consen 105 ERGITIKAQTASIFYKDGQSYLLN-LIDTPGHVDFSGEVSR------SLAACDGALLVVDASQ--GVQAQTVANF-YLAF 174 (650)
T ss_pred hcCcEEEeeeeEEEEEcCCceEEE-eecCCCcccccceehe------hhhhcCceEEEEEcCc--CchHHHHHHH-HHHH
Confidence 356777777765332222211000 0123765 56655544 5667999999999988 5555443332 2233
Q ss_pred HHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 320 EEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 320 ~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
+ .+-.+|.|+||||+-... ++++..- ...-++.+ ...++.+||++|+|+++|++.|.+..|+
T Consensus 175 e----------~~L~iIpVlNKIDlp~ad--pe~V~~q---~~~lF~~~-~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 175 E----------AGLAIIPVLNKIDLPSAD--PERVENQ---LFELFDIP-PAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred H----------cCCeEEEeeeccCCCCCC--HHHHHHH---HHHHhcCC-ccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 3 233589999999996443 2333333 33344544 5679999999999999999999888664
No 296
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.86 E-value=2.3e-05 Score=80.21 Aligned_cols=62 Identities=31% Similarity=0.248 Sum_probs=44.7
Q ss_pred cEEEEccCCCChhHHHHhhhccc-cceeecccccCCCCceeEEEEEeeEe----CCceEEEECCCCCCCcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE-GVKVSKLTEAPIPGTTLGILRIGGIL----PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~-~~~~~~lt~S~~PGTT~~~~~~~~~l----~~~~~liDTPGi~~~~~ 465 (666)
-|.|+|.+++|||||+|.|++.. ...++ +..+.||+++....... ...+.++||||+..+..
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~----~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVM----DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEec----CCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 57799999999999999999873 33332 34467888765432222 24688999999997765
No 297
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.85 E-value=0.00046 Score=69.37 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=67.0
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..++.+++|+|+.+... + ..+ ...+..+.+. . .+.|+++|+||+|+........ ...+ .+..+.
T Consensus 80 ~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~-~~~~i~lv~nK~Dl~~~~~~~~-~~~~----~~~~~~- 143 (215)
T PTZ00132 80 IKGQCAIIMFDVTSRIT-Y-KNV-PNWHRDIVRV------C-ENIPIVLVGNKVDVKDRQVKAR-QITF----HRKKNL- 143 (215)
T ss_pred ccCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------C-CCCCEEEEEECccCccccCCHH-HHHH----HHHcCC-
Confidence 46789999999986321 1 111 1222222221 1 3468999999999975443222 1222 233332
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCC-----CChhHHHH
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQN-----AGKSTLIN 416 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~N-----vGKSTLIN 416 (666)
.++.+||++|.|+++++..|...+-..-.++++..|- +|-.....
T Consensus 144 ---~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 144 ---QYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred ---EEEEEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence 3789999999999998888876655555788887776 66544333
No 298
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.84 E-value=1.8e-05 Score=79.57 Aligned_cols=62 Identities=24% Similarity=0.208 Sum_probs=41.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceee-c------------------------ccccCCCCceeEEEEEeeEe-CCceE
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVS-K------------------------LTEAPIPGTTLGILRIGGIL-PAKAK 453 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~-~------------------------lt~S~~PGTT~~~~~~~~~l-~~~~~ 453 (666)
+|.++|.+|+|||||+|+|+...+.... . ......+|+|++........ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4789999999999999999865443211 0 00112378998875543322 33678
Q ss_pred EEECCCCC
Q 005977 454 LYDTPGLL 461 (666)
Q Consensus 454 liDTPGi~ 461 (666)
++||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999963
No 299
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.84 E-value=0.00032 Score=71.86 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=54.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH---------HHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR---------LDRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~---------L~~w 357 (666)
...++|++|+|+|+.+... + ..+...+...+... ....|+|||.||+||......... -..-
T Consensus 69 ~~~~~d~illvfdis~~~S-f-~~i~~~w~~~~~~~-------~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~ 139 (222)
T cd04173 69 AYPDSDAVLICFDISRPET-L-DSVLKKWQGETQEF-------CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQ 139 (222)
T ss_pred hccCCCEEEEEEECCCHHH-H-HHHHHHHHHHHHhh-------CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHH
Confidence 4568999999999988531 1 11112222222221 134689999999999642110000 0111
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCc-chhhHHHHHHh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDL-GVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~-Gv~eLl~~I~~ 393 (666)
...+.+..| ....+-+||+++. |+++++.....
T Consensus 140 g~~~ak~~~---~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 140 GTVLAKQVG---AVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHcC---CCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 122334445 2247889999988 49999887654
No 300
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.83 E-value=2.3e-05 Score=84.34 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=29.3
Q ss_pred EEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEE
Q 005977 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL 442 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~ 442 (666)
+.+||.||||||||+|+|++... .++++|+||++..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~------~~~~~pftT~~p~ 36 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV------EIANYPFTTIDPN 36 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC------cccCCCCccccce
Confidence 47899999999999999997542 3468899998754
No 301
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.78 E-value=3.3e-05 Score=70.80 Aligned_cols=58 Identities=34% Similarity=0.429 Sum_probs=42.7
Q ss_pred EEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCcc
Q 005977 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 403 vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~~ 465 (666)
++|.+|+|||||+|+|++..... .+..+++|.......... ...+.++||||+.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-----VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-----cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999999764332 246777777765544333 34789999999986654
No 302
>PRK12740 elongation factor G; Reviewed
Probab=97.78 E-value=0.00018 Score=84.74 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.7
Q ss_pred EEEEecccCcchhhHHHHHHhhcCCC
Q 005977 373 VYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 373 V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
|++.||++|.|++.|++.|..++|..
T Consensus 239 v~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 239 VFCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred EEeccccCCccHHHHHHHHHHHCCCh
Confidence 77889999999999999999888755
No 303
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=3.3e-05 Score=83.69 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=55.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEE----Ee---------------eEeCCceEEEECCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILR----IG---------------GILPAKAKLYDTPG 459 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~----~~---------------~~l~~~~~liDTPG 459 (666)
..+.+||.||||||||+|+|+... .. ..++|-||.+... ++ .+.+..+.++|.+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~-----~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAG 76 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AE-----IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAG 76 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-cc-----ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecc
Confidence 468999999999999999999765 32 2589999988432 11 11223578999999
Q ss_pred CCCCcccccccChhhHHHHHhhhhccceeeEe
Q 005977 460 LLHPHLMSMRLNRDEQKMVEIRKELQPRTYRV 491 (666)
Q Consensus 460 i~~~~~~~~~L~~~e~~~~~~~kel~p~t~~l 491 (666)
++.....-.-| .++++.--++.......+
T Consensus 77 LV~GAs~GeGL---GNkFL~~IRevdaI~hVV 105 (372)
T COG0012 77 LVKGASKGEGL---GNKFLDNIREVDAIIHVV 105 (372)
T ss_pred cCCCcccCCCc---chHHHHhhhhcCeEEEEE
Confidence 99766544333 345554445555544433
No 304
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.77 E-value=0.00023 Score=80.08 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=55.1
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCC--C---CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDG--M---FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~g--s---~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
|++ +|.+.|.. ++..+|++++|||+..... . .+. ..+. +..+... +.+++|+++||+|
T Consensus 93 PGh~~f~~~~~~------g~~~aD~ailVVda~~G~~e~~~~~~~q-T~eh-~~~~~~~--------gi~~iiv~vNKmD 156 (446)
T PTZ00141 93 PGHRDFIKNMIT------GTSQADVAILVVASTAGEFEAGISKDGQ-TREH-ALLAFTL--------GVKQMIVCINKMD 156 (446)
T ss_pred CChHHHHHHHHH------hhhhcCEEEEEEEcCCCceecccCCCcc-HHHH-HHHHHHc--------CCCeEEEEEEccc
Confidence 775 34444433 4567999999999987320 0 011 1222 2223321 3345789999999
Q ss_pred CC--CCC-CChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhh
Q 005977 344 LL--PSQ-VSPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRN 386 (666)
Q Consensus 344 LL--pk~-~~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~e 386 (666)
+. ... .....+..-++.++...|+.. -..++++||.+|.|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 53 211 111222333333444455421 13489999999999864
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=97.75 E-value=0.00043 Score=76.51 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=57.6
Q ss_pred CCcEEEEEeCC--CCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhH------HHHHHhhcCCCccEEE
Q 005977 332 LPKLVLVGTKV--DLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNL------LAFIKELAGPRGNVWV 403 (666)
Q Consensus 332 ~kpvILVlNKi--DLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eL------l~~I~~~l~~~~~v~v 403 (666)
.+|+++|+||. |+++... ..+.. ++.+....+ -..++++||+-..-+.+| .+++..+
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~--~~~~~-l~~~~~~~~---~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~--------- 284 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKN--KWLAK-IKEWVGEKG---GGPIIPYSAEFEEELAELGSEEERKEYLEEY--------- 284 (390)
T ss_pred cCCEEEEEECchhhhcccch--HHHHH-HHHHHHhcC---CCeEEEeeHHHHHHHHhcCCHHHHHHHHHHc---------
Confidence 47999999999 8744321 11222 122222322 123899998766533333 3444443
Q ss_pred EccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 404 IGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 404 vG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
|....|--.+|++....-+.. .-.|+. |-.++- +.++.+.+..|..|..+..+
T Consensus 285 -g~~~~gl~~li~~~~~lL~li-~ffT~g--~~e~ra-----w~i~~Gsta~~aAg~IHsD~ 337 (390)
T PTZ00258 285 -GIKQSMLDKIIKTGYKLLNLI-HFFTAG--PDEVRC-----WTIQKGTKAPQAAGVIHSDF 337 (390)
T ss_pred -CCCcccHHHHHHHHHHHhCCE-EEEcCC--CCceeE-----EEeCCCCcHHHHHhhhhhHH
Confidence 455567777888776433222 111211 222321 23556677777788776554
No 306
>PRK13768 GTPase; Provisional
Probab=97.74 E-value=0.00016 Score=75.36 Aligned_cols=97 Identities=26% Similarity=0.260 Sum_probs=60.1
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH----------
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH---------- 360 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~---------- 360 (666)
.++|++|+|++... .+.......+-.+... .....|+++|+||+|+++.... ..+..++..
T Consensus 129 ~~~ii~liD~~~~~--~~~d~~~~~~l~~~~~------~~~~~~~i~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~ 199 (253)
T PRK13768 129 KSVVVFLIDAVLAK--TPSDFVSLLLLALSVQ------LRLGLPQIPVLNKADLLSEEEL-ERILKWLEDPEYLLEELKL 199 (253)
T ss_pred CeEEEEEechHHhC--CHHHHHHHHHHHHHHH------HHcCCCEEEEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhc
Confidence 78999999998732 3322221111111110 0134689999999999977542 223333331
Q ss_pred --------------HHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 361 --------------RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 361 --------------~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.+++.+. ...++++||+++.|+++|++.|.++++..
T Consensus 200 ~~~~~~~~~~~~~~~i~~~~~--~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 200 EKGLQGLLSLELLRALEETGL--PVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred ccchHHHHHHHHHHHHHHHCC--CCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 1223331 34689999999999999999999887643
No 307
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.74 E-value=0.00039 Score=79.84 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=31.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
++..+|.+++|+|+.+ |... ..+.++...+. .+.|+++++||+|+..
T Consensus 99 ~l~~aD~aIlVvDa~~--gv~~--~t~~l~~~~~~---------~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 99 TLTAVDSALMVIDAAK--GVEP--QTRKLMEVCRL---------RDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHHCCEEEEEEecCC--CCCH--HHHHHHHHHHh---------cCCCEEEEEECCcccc
Confidence 4456899999999987 3222 12334443332 3568999999999864
No 308
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.73 E-value=3.7e-05 Score=74.18 Aligned_cols=62 Identities=24% Similarity=0.177 Sum_probs=39.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecc----------cccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKL----------TEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~l----------t~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
+|+++|.+|+|||||+|+|++......... .....+|+|.+........ ...+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 478999999999999999987654321100 0122355665533222111 2367899999975
No 309
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.73 E-value=6.2e-05 Score=79.45 Aligned_cols=65 Identities=28% Similarity=0.265 Sum_probs=39.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeec-c--cccCCCCce-eEEEEEeeEeC---CceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK-L--TEAPIPGTT-LGILRIGGILP---AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~-l--t~S~~PGTT-~~~~~~~~~l~---~~~~liDTPGi~~~ 463 (666)
.+++++|.+|+|||||||+|++........ . +....+.|+ ........... -.+.++||||+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 478999999999999999999775433210 0 001123332 22222221112 14789999999754
No 310
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.71 E-value=7.1e-05 Score=70.70 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=36.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|++++.... +..++|+.+.......+.. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-------TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-------cccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 47999999999999999999865321 2344454443222112222 36789999964
No 311
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.71 E-value=3.7e-05 Score=75.89 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=40.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccce-eecccccCCCCceeEEEEEeeEe---------------CCceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVK-VSKLTEAPIPGTTLGILRIGGIL---------------PAKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~-~~~lt~S~~PGTT~~~~~~~~~l---------------~~~~~liDTPGi 460 (666)
+|.++|.+|+|||||+|+|+...... ......+..+|+|.+.......+ ...+.++||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 78 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH 78 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc
Confidence 68999999999999999998642110 11112234678887754322212 236789999997
No 312
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.70 E-value=0.00014 Score=69.26 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=90.6
Q ss_pred eccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHHhcCc
Q 005977 207 GVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKP 285 (666)
Q Consensus 207 ~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP 285 (666)
.||-.|.|+|++ |.+..-. -.....=++-++.+.|.+-.-.-.-..+|+..-.+.|..+.-+
T Consensus 25 lvGLq~sGKtt~Vn~ia~g~----------------~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR- 87 (186)
T KOG0075|consen 25 LVGLQNSGKTTLVNVIARGQ----------------YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR- 87 (186)
T ss_pred EEeeccCCcceEEEEEeecc----------------chhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh-
Confidence 589999998887 5221100 1123344556777766553211111224665555667666444
Q ss_pred ccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhC
Q 005977 286 SGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 286 ~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~ 365 (666)
.+++|+++||+.|++ ... .....+-+.|.+. +-.+.|++++.||+|+-..-...+ . ...+
T Consensus 88 ----~v~aivY~VDaad~~-k~~-~sr~EL~~LL~k~------~l~gip~LVLGnK~d~~~AL~~~~----l----i~rm 147 (186)
T KOG0075|consen 88 ----GVSAIVYVVDAADPD-KLE-ASRSELHDLLDKP------SLTGIPLLVLGNKIDLPGALSKIA----L----IERM 147 (186)
T ss_pred ----cCcEEEEEeecCCcc-cch-hhHHHHHHHhcch------hhcCCcEEEecccccCcccccHHH----H----HHHh
Confidence 689999999999964 332 2233444444431 114568999999999854432111 1 1234
Q ss_pred CCCCCC----eEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLN----GVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~----~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
|+..+. -.|.||++...+++.+++.|.++.
T Consensus 148 gL~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 148 GLSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred CccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 443222 368999999999999999998763
No 313
>PRK13351 elongation factor G; Reviewed
Probab=97.68 E-value=0.00035 Score=82.65 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=32.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
+...+|.+++|+|+.+.. .. . ...++..+.. .+.|+++|+||+|+...
T Consensus 93 ~l~~aD~~ilVvd~~~~~--~~-~-~~~~~~~~~~---------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 93 SLRVLDGAVVVFDAVTGV--QP-Q-TETVWRQADR---------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHhCCEEEEEEeCCCCC--CH-H-HHHHHHHHHh---------cCCCEEEEEECCCCCCC
Confidence 456689999999998743 21 1 2333343433 34689999999998753
No 314
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00032 Score=78.99 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|++.-...|..+ ..+-+|++++|||+.| |..|+.++. + ++++. .+.|+|+++||+|+.+.+.
T Consensus 63 PGHeAFt~mRaR-----Ga~vtDIaILVVa~dD--Gv~pQTiEA-I-~hak~---------a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 63 PGHEAFTAMRAR-----GASVTDIAILVVAADD--GVMPQTIEA-I-NHAKA---------AGVPIVVAINKIDKPEANP 124 (509)
T ss_pred CcHHHHHHHHhc-----CCccccEEEEEEEccC--CcchhHHHH-H-HHHHH---------CCCCEEEEEecccCCCCCH
Confidence 888755555543 5677999999999998 777765432 2 33443 4579999999999985432
Q ss_pred ChHHHHHHHHHH---HHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 350 SPTRLDRWVRHR---AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 ~~~~L~~wl~~~---~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++..-++.+ .+.+|- -..++++||++|.|+++|+..|.-.
T Consensus 125 --~~v~~el~~~gl~~E~~gg--~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 125 --DKVKQELQEYGLVPEEWGG--DVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred --HHHHHHHHHcCCCHhhcCC--ceEEEEeeccCCCCHHHHHHHHHHH
Confidence 2222211110 112221 2458999999999999999988643
No 315
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.66 E-value=6.1e-05 Score=71.64 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=34.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE--EEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~--~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|........+ .....+.+|.+. ..+.. -+..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--LPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--CcccccCCccccceEEEEE-CCEEEEEEECCCCh
Confidence 4789999999999999999864321000 001122333332 22221 12367899999975
No 316
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.65 E-value=0.0001 Score=70.09 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=36.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|+|++..... ...|.++.+........+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 378999999999999999998654221 1234433333221111222 46789999954
No 317
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.65 E-value=9e-05 Score=69.48 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=34.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|+...... ..+.|+.+.......++. .+.++||||-.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD-------EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC-------CcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 68999999999999999999654221 223333332222112222 25679999964
No 318
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00029 Score=78.08 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=69.2
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ ||.-..++ +++.|.-.++||||.. |-..+.+.+.. .++. ++-.+|-|+||+||-..+
T Consensus 84 PGHVDFsYEVSR------SLAACEGalLvVDAsQ--GveAQTlAN~Y-lAle----------~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 84 PGHVDFSYEVSR------SLAACEGALLVVDASQ--GVEAQTLANVY-LALE----------NNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred CCccceEEEehh------hHhhCCCcEEEEECcc--chHHHHHHHHH-HHHH----------cCcEEEEeeecccCCCCC
Confidence 665 34433443 4456888999999988 55444443332 2333 234688899999996543
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. ++..++.-.-.|++ ..+.+.+||++|.|+++|++.|.+..|+
T Consensus 145 p-----ervk~eIe~~iGid-~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 145 P-----ERVKQEIEDIIGID-ASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred H-----HHHHHHHHHHhCCC-cchheeEecccCCCHHHHHHHHHhhCCC
Confidence 2 33333333456765 6679999999999999999999988764
No 319
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.64 E-value=0.00011 Score=70.29 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=38.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+++++|.+|||||||+|+|.+..... ..+..|.+...+... +..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~~~~i~~~---~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFNIKTVQSD---GFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcceEEEEEC---CEEEEEEECCCCH
Confidence 4689999999999999999998753211 123345444444333 2357889999964
No 320
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.62 E-value=9.2e-05 Score=78.44 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=34.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeec-c---cccCCCCceeEEEEEeeE---eCCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSK-L---TEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~-l---t~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~~~ 463 (666)
-+++|+|.+|+|||||||+|++........ . ..+..+.++......... ..-.+.++||||+...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 379999999999999999999875443320 0 001111111221111110 1125789999999753
No 321
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.60 E-value=9.9e-05 Score=69.96 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=35.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|+...... ..+.|+.+.......++. .+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-------DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-------ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999998654221 223333333222222222 456899999654
No 322
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.60 E-value=0.00089 Score=75.45 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCc------HHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFP------KRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV 342 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p------~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKi 342 (666)
|++ +|.+.|.. ++..+|.+++|||+.+ |.+. .+..+.+ ..+... +.+++|+++||+
T Consensus 93 PGh~df~~~~~~------g~~~aD~aIlVVda~~--G~~e~g~~~~~qT~eh~-~~~~~~--------gi~~iIV~vNKm 155 (447)
T PLN00043 93 PGHRDFIKNMIT------GTSQADCAVLIIDSTT--GGFEAGISKDGQTREHA-LLAFTL--------GVKQMICCCNKM 155 (447)
T ss_pred CCHHHHHHHHHh------hhhhccEEEEEEEccc--CceecccCCCchHHHHH-HHHHHc--------CCCcEEEEEEcc
Confidence 765 35555543 4567999999999987 3221 1222222 112221 334678899999
Q ss_pred CCCCCCCChHHH---HHHHHHHHHhCCCCC-CCeEEEEecccCcchhh
Q 005977 343 DLLPSQVSPTRL---DRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRN 386 (666)
Q Consensus 343 DLLpk~~~~~~L---~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~e 386 (666)
|+.+......++ ..-++.+.++.|+.. -..++++||.+|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 987432222222 223344455566421 12489999999999853
No 323
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.59 E-value=0.0004 Score=69.41 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------------
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS------------------- 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk------------------- 347 (666)
...++|++++|.|+.+... + ..+...+.+.++.. . ...|+|||.||+||...
T Consensus 84 ~~~~ad~iilv~d~t~~~S-f-~~~~~~w~~~i~~~------~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNS-L-RNVKTMWYPEIRHF------C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred cCCCCCEEEEEEECCChhH-H-HHHHHHHHHHHHHh------C-CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4578999999999987532 1 11212223333321 1 34689999999998631
Q ss_pred -CCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 348 -QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 348 -~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.......+.| .+..+. ..+.+||++|.|++++++.+.+
T Consensus 155 ~~V~~~e~~~~----a~~~~~----~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 155 DILPPETGRAV----AKELGI----PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CccCHHHHHHH----HHHhCC----EEEEcCCCCCCCHHHHHHHHHH
Confidence 1222333333 345553 3789999999999999988764
No 324
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.59 E-value=0.00015 Score=67.12 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=35.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|++...... .....|.+.....+... ..-.+.++||||..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 689999999999999999986543321 01222333332222210 01246789999973
No 325
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.57 E-value=0.00016 Score=68.12 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE--EEEeeE-eCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGI-LPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~--~~~~~~-l~~~~~liDTPGi~ 461 (666)
+|.++|.+|||||||+|+|++..... ...|.++.+. ..+... ..-.+.++||||..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 68999999999999999999764321 1222222221 112100 01256789999963
No 326
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.57 E-value=0.00012 Score=68.88 Aligned_cols=55 Identities=31% Similarity=0.315 Sum_probs=35.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|+..... +...+|+.+........+. .+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-------cccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 5889999999999999999865422 1233333332221111221 46789999954
No 327
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.56 E-value=0.00017 Score=70.79 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
...+++++|.+|||||||+|+|.+...... .+..+.|...+.+. +-.+.++||||..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~~~D~~G~~ 72 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAIG---NIKFTTFDLGGHQ 72 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEEC---CEEEEEEECCCCH
Confidence 356899999999999999999986532211 11222232222221 2257889999975
No 328
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.56 E-value=0.0001 Score=85.61 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=40.3
Q ss_pred ccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 405 G~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
|.+|||||||+|+|++... .++++||+|.+........+ ..+.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC------eecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 8899999999999987532 34689999998764332233 36789999999754
No 329
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.56 E-value=0.00016 Score=70.11 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=37.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|+...... ..+..|.+.....+. +..+.++||||..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEEIVYK---NIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEEC---CeEEEEEECCCCH
Confidence 4579999999999999999998654321 123344433322222 2367899999964
No 330
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.55 E-value=0.00014 Score=68.63 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=35.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|....... . ...+..|++....... ...+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~--~~~~t~g~~~~~~~~~---~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-Q--IIVPTVGFNVESFEKG---NLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-c--eecCccccceEEEEEC---CEEEEEEECCCCH
Confidence 47899999999999999998753111 1 1123345443322211 2257899999975
No 331
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.55 E-value=0.00015 Score=69.59 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=35.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi 460 (666)
.++++||.+|||||||+|+++........ +...|.+.....+. .. ..+.++||||-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMIT--IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 37899999999999999999865422111 12234333222221 22 25679999994
No 332
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.55 E-value=0.00016 Score=76.87 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=52.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+++|.-.. -.+.++.-|......++. .....|=|=||+|..+.... . +..
T Consensus 255 VaeadlllHvvDiShP~ae~---q~e~Vl~vL~~igv~~~p--kl~~mieVdnkiD~e~~~~e-----~------E~n-- 316 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEE---QRETVLHVLNQIGVPSEP--KLQNMIEVDNKIDYEEDEVE-----E------EKN-- 316 (410)
T ss_pred HhhcceEEEEeecCCccHHH---HHHHHHHHHHhcCCCcHH--HHhHHHhhccccccccccCc-----c------ccC--
Confidence 46799999999999986322 123334444443221110 11124557788887654321 0 111
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..+.+||++|.|+++|++.+...
T Consensus 317 ----~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 317 ----LDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred ----CccccccccCccHHHHHHHHHHH
Confidence 16789999999999999998764
No 333
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.55 E-value=0.00012 Score=78.36 Aligned_cols=60 Identities=32% Similarity=0.350 Sum_probs=45.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE----EEEeeEeCCceEEEECCCCCCCcccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI----LRIGGILPAKAKLYDTPGLLHPHLMS 467 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~----~~~~~~l~~~~~liDTPGi~~~~~~~ 467 (666)
+|.+||.||+|||||||++.... ..+.++|-||+.. +++. -...+.+.|.||+..-...-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak------PKIadYpFTTL~PnLGvV~~~--~~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK------PKIADYPFTTLVPNLGVVRVD--GGESFVVADIPGLIEGASEG 224 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC------CcccCCccccccCcccEEEec--CCCcEEEecCcccccccccC
Confidence 68899999999999999998542 2346899999874 3331 23468999999998665443
No 334
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.55 E-value=0.00046 Score=76.97 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=54.4
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCC
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL 370 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~ 370 (666)
-..|+|+.|++.--|..+. .--.|+.-++... .++|+|+|+||+|++..+.....-++.++.+....++
T Consensus 248 raaVLYfmDLSe~CGySva-~QvkLfhsIKpLF-------aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v--- 316 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVA-AQVKLYHSIKPLF-------ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV--- 316 (620)
T ss_pred hhhheeeeechhhhCCCHH-HHHHHHHHhHHHh-------cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc---
Confidence 3578999999976665432 2223344343321 4578999999999997765433334444444433333
Q ss_pred CeEEEEecccCcchhhHH
Q 005977 371 NGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 371 ~~V~~VSAkkg~Gv~eLl 388 (666)
.|+-.|..+..|+-++.
T Consensus 317 -~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 317 -KVVQTSCVQEEGVMDVR 333 (620)
T ss_pred -eEEEecccchhceeeHH
Confidence 38889999999986644
No 335
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.54 E-value=0.00019 Score=78.55 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=44.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEE----Eee--------------EeCCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILR----IGG--------------ILPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~----~~~--------------~l~~~~~liDTPGi 460 (666)
..+.+||.||||||||+|+|++..... ++++|.||.+... ++. ..+..+.++|.||+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~-----~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGl 77 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNE-----AANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGL 77 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccc-----cCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccc
Confidence 468999999999999999999765322 2477888877432 211 01235789999999
Q ss_pred CCCcc
Q 005977 461 LHPHL 465 (666)
Q Consensus 461 ~~~~~ 465 (666)
.....
T Consensus 78 v~gAs 82 (368)
T TIGR00092 78 VGGAS 82 (368)
T ss_pred ccchh
Confidence 87644
No 336
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.53 E-value=0.00018 Score=67.97 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=37.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|+...... ...+.+|++.....+... ..-.+.++||||..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP----DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----ccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 68999999999999999998654221 123455555443333210 01246789999953
No 337
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.53 E-value=0.00015 Score=68.88 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=36.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+++..... ...+.|+.+.......+.. .+.++||||...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFV-------EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-------cccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 6899999999999999999854321 2334455443222222332 346899999753
No 338
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.53 E-value=0.00014 Score=68.65 Aligned_cols=56 Identities=25% Similarity=0.205 Sum_probs=35.1
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+|+++..... ...+.|+.+.......++. .+.++||||...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFV-------EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-------cccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 6899999999999999999865322 1223344332221111222 356799999643
No 339
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.53 E-value=0.00019 Score=68.40 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=34.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+++...... ...|.++.+.......+.+ .+.++||||..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999998643211 2334333332211111222 46789999943
No 340
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.51 E-value=0.00016 Score=68.29 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=37.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|++++.... ......|.+...+.+. ...+.++||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----TTIPTIGFNVETVEYK---NVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCcCcceEEEEEC---CEEEEEEECCCCh
Confidence 4789999999999999999977521 1123344454443332 2367899999965
No 341
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.51 E-value=0.00021 Score=67.38 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
+|+++|.+|+|||||+|+|++..... ...|.++.+........+. .+.++||||.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 68999999999999999998654211 1223323222111111222 4678999994
No 342
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.51 E-value=0.00014 Score=76.54 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=40.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccce--eecc----------cccCCCCceeEEEEEeeEeC-CceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVK--VSKL----------TEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~--~~~l----------t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~ 462 (666)
+|+++|.+|+|||||+|+|+...+.. .+.+ ......|+|++.......+. ..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 58899999999999999998543321 1111 01235578877544333233 3678999999753
No 343
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.51 E-value=0.00019 Score=67.74 Aligned_cols=55 Identities=31% Similarity=0.359 Sum_probs=34.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-----CceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-----AKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-----~~~~liDTPGi 460 (666)
+|+++|.+|||||||+|+|+...... ...|.++.+.......+. -.+.++||||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 68999999999999999998653211 122333334322222222 14678999994
No 344
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.51 E-value=0.00019 Score=67.87 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=35.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE-eCCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI-LPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~-l~~~~~liDTPGi 460 (666)
.+++++|.+|||||||+|+|++..... .....+|.+.....+..- ..-.+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE----NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 368999999999999999999765322 112334433222222210 0124678999994
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.50 E-value=0.00022 Score=76.24 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=49.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEee------------------EeCCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG------------------ILPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~------------------~l~~~~~liDTPGi 460 (666)
..+.|||.||||||||+|+|...... ..++|-+|.+...-.. ..+..+.++|+.|+
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~------~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAG------AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCC------ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 47899999999999999999976533 2589999998653221 12346789999999
Q ss_pred CCCccccccc
Q 005977 461 LHPHLMSMRL 470 (666)
Q Consensus 461 ~~~~~~~~~L 470 (666)
......-.-|
T Consensus 95 vkGAs~G~GL 104 (391)
T KOG1491|consen 95 VKGASAGEGL 104 (391)
T ss_pred ccCcccCcCc
Confidence 9776554433
No 346
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.50 E-value=0.00013 Score=70.40 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccce------eec---ccccCCCCceeEEEEEeeEe------CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVK------VSK---LTEAPIPGTTLGILRIGGIL------PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~------~~~---lt~S~~PGTT~~~~~~~~~l------~~~~~liDTPGi~~ 462 (666)
+|.++|.+|||||||+|+|++..+.. ... +......|+|.....+...+ .-.+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 78999999999999999998753211 000 00112346665433222111 12457899999864
No 347
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0012 Score=72.50 Aligned_cols=165 Identities=21% Similarity=0.149 Sum_probs=86.8
Q ss_pred eeeccCCCchH-HHHHHHhhhhhhH--HHHHHHHHHHhhhcCcc---eee-cceecceecceec--------cccccccc
Q 005977 205 PAGVGYGNITE-ELVERSKKKKLSK--AERKKKAREAQKEKGEV---TVC-ARCHSLRNYGQVK--------NEVAENLI 269 (666)
Q Consensus 205 ~a~vGrpNvg~-tlLn~l~~~Kvs~--~~rK~~a~~~~~~~~~~---~~C-qRC~rLr~ygkv~--------~~~~q~~i 269 (666)
.+.+|-++.|+ ||+=||.-+--++ ..-++..++++..+-.. .+| .+----|..|+.. .....+.+
T Consensus 10 l~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tI 89 (428)
T COG5256 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTI 89 (428)
T ss_pred EEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEE
Confidence 35689999994 5558888774322 22233333333322221 111 1111112222221 12222222
Q ss_pred ---Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCC-----CCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEe
Q 005977 270 ---PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDG-----MFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGT 340 (666)
Q Consensus 270 ---P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~g-----s~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlN 340 (666)
|++ +|-..|.. ....+|+.|+|||+++... ...+ ..+.+ .|.+.. +...+|+++|
T Consensus 90 iDaPGHrdFvknmIt------GasqAD~aVLVV~a~~~efE~g~~~~gQ-trEH~--~La~tl-------Gi~~lIVavN 153 (428)
T COG5256 90 IDAPGHRDFVKNMIT------GASQADVAVLVVDARDGEFEAGFGVGGQ-TREHA--FLARTL-------GIKQLIVAVN 153 (428)
T ss_pred eeCCchHHHHHHhhc------chhhccEEEEEEECCCCccccccccCCc-hhHHH--HHHHhc-------CCceEEEEEE
Confidence 664 34444432 4567999999999998621 1111 12222 122211 3457999999
Q ss_pred CCCCCCCCCChHHHHH---HHHHHHHhCCCCC-CCeEEEEecccCcchhhH
Q 005977 341 KVDLLPSQVSPTRLDR---WVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 341 KiDLLpk~~~~~~L~~---wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eL 387 (666)
|+|+++..+ ++.++ -+..+.+..|+.. -...++|||.+|.++.+.
T Consensus 154 KMD~v~wde--~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 154 KMDLVSWDE--ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cccccccCH--HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 999998443 33333 3344556777642 134789999999987653
No 348
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.48 E-value=0.00016 Score=72.34 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=36.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+|+|.+|||||||||++++..... ...|.++.+.......+++ .+.|+||||...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc------ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998654221 1344444333211111222 356899999753
No 349
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.47 E-value=0.00025 Score=66.43 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=34.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
+++++|.+|||||||+|+|+...... ...+.++............ .+.++||||-
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------CcCCccceeEEEEEEEECCEEEEEEEEECCch
Confidence 68999999999999999999654321 1222232222221111112 4678999994
No 350
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.47 E-value=0.00025 Score=67.15 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++++|.+|||||||+|+|+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998654
No 351
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.45 E-value=0.00023 Score=68.67 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=36.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+++++|.+|||||||+|+|.+.... ...+..|.....+.+. ...+.++||||..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~~~~~~~~~---~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKTLEYE---GYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCccccceEEEEEC---CEEEEEEECCCCH
Confidence 357999999999999999999875321 1123334333222222 2256899999964
No 352
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.44 E-value=0.0002 Score=66.38 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=35.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
.|.++|.+|||||||+|+|.+..... ...|.+..+...+.. -...+.++||||..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~------~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~ 55 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSE------DTIPTVGFNMRKVTK-GNVTLKVWDLGGQP 55 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCc------CccCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 37899999999999999998764321 223433333333221 11256899999963
No 353
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.44 E-value=0.00013 Score=81.51 Aligned_cols=64 Identities=27% Similarity=0.236 Sum_probs=44.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceee--------------cc-----------cccCCCCceeEEEEEeeEeC-Cc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVS--------------KL-----------TEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~--------------~l-----------t~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..++.++|.+|+|||||+|+|+...+.... .. ..-..+|+|++......... ..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 357999999999999999999865433211 00 01126899999876543232 36
Q ss_pred eEEEECCCCC
Q 005977 452 AKLYDTPGLL 461 (666)
Q Consensus 452 ~~liDTPGi~ 461 (666)
+.++||||..
T Consensus 86 i~liDtpG~~ 95 (425)
T PRK12317 86 FTIVDCPGHR 95 (425)
T ss_pred EEEEECCCcc
Confidence 7899999953
No 354
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.43 E-value=0.0011 Score=73.50 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=89.2
Q ss_pred chHHHH-HHHhhhhhhHHHHHHHHHHHhhhc-----CcceeecceecceecceecccccccccCcc-hHHHHHHHHhcCc
Q 005977 213 ITEELV-ERSKKKKLSKAERKKKAREAQKEK-----GEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDRVIATRLMKP 285 (666)
Q Consensus 213 vg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~-----~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~-df~~~L~~~l~rP 285 (666)
-||||| .+|.++.-...++.+.+..++..+ -.-++...|+...+.|-..| -+..|++ +|.....+
T Consensus 16 HGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~IN---IvDTPGHADFGGEVER----- 87 (603)
T COG1217 16 HGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRIN---IVDTPGHADFGGEVER----- 87 (603)
T ss_pred CCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEE---EecCCCcCCccchhhh-----
Confidence 467776 888888655555544442222211 12245556666654432222 1123655 56655444
Q ss_pred ccccccCEEEEEEecCCCCCCCcHHHHHHHH-HHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH-
Q 005977 286 SGNANAGVVVMVVDCVDFDGMFPKRAAKSLF-KKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK- 363 (666)
Q Consensus 286 ~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~-~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k- 363 (666)
.++.+|-|++||||.+ |..|+. ++++ ++|.. +.+| |+|+||+|.-.... +.+-.-+..++-
T Consensus 88 -vl~MVDgvlLlVDA~E--GpMPQT--rFVlkKAl~~---------gL~P-IVVvNKiDrp~Arp--~~Vvd~vfDLf~~ 150 (603)
T COG1217 88 -VLSMVDGVLLLVDASE--GPMPQT--RFVLKKALAL---------GLKP-IVVINKIDRPDARP--DEVVDEVFDLFVE 150 (603)
T ss_pred -hhhhcceEEEEEEccc--CCCCch--hhhHHHHHHc---------CCCc-EEEEeCCCCCCCCH--HHHHHHHHHHHHH
Confidence 5567999999999988 666753 3332 23332 4445 89999999854321 111111122222
Q ss_pred ------hCCCCCCCeEEEEecccCc----------chhhHHHHHHhhcCC
Q 005977 364 ------AGGAPKLNGVYLVSARKDL----------GVRNLLAFIKELAGP 397 (666)
Q Consensus 364 ------~~g~~~~~~V~~VSAkkg~----------Gv~eLl~~I~~~l~~ 397 (666)
++++| |++.||..|+ .+..|++.|.++.|.
T Consensus 151 L~A~deQLdFP----ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 151 LGATDEQLDFP----IVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hCCChhhCCCc----EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 34444 8899998875 467789999888764
No 355
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.43 E-value=0.00026 Score=67.46 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.7
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+++++|.+|+|||||+++|...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999754
No 356
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.43 E-value=0.00022 Score=67.24 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=35.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|....... ..+..|.+...+... -...+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-----~~~t~~~~~~~~~~~--~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-----TIPTVGFNVEMLQLE--KHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-----ccCccCcceEEEEeC--CceEEEEEECCCCH
Confidence 47899999999999999999765321 123334333333322 11257899999964
No 357
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.42 E-value=0.00022 Score=66.72 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=36.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|++.... +..+.|+.+......... -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-------EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-------cCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 4789999999999999999865421 233444444332222222 2467899999653
No 358
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.41 E-value=0.00021 Score=70.68 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=38.1
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecc------c----ccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKL------T----EAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~l------t----~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|+...+.-.... . .....|+|.......... ...+.++||||...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 789999999999999999996322110000 0 012256665543222111 23578999999753
No 359
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.40 E-value=0.00024 Score=68.73 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~ 25 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH 25 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 378999999999999999999653
No 360
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.39 E-value=0.00035 Score=66.46 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.9
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 361
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.39 E-value=0.0018 Score=62.88 Aligned_cols=150 Identities=14% Similarity=0.054 Sum_probs=74.7
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcc-hHHHHHHH
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDF-DFDRVIAT 280 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~-df~~~L~~ 280 (666)
+...++|-.|.|||++ +++.++-.+ ...++.|-+-+.+- |..++.. -..+++. .+..+..+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~--------------~i~pt~gf~Iktl~-~~~~~L~--iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTD--------------TISPTLGFQIKTLE-YKGYTLN--IWDVGGQKTLRSYWKN 79 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcc--------------ccCCccceeeEEEE-ecceEEE--EEEcCCcchhHHHHHH
Confidence 3456689999998776 766665521 12333333333222 2111110 0112332 23333333
Q ss_pred HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH--H
Q 005977 281 RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW--V 358 (666)
Q Consensus 281 ~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w--l 358 (666)
.-+.+|.+|+|||..|. .+.++. ...|......... ...|++++.||.|+.+.-. .+.+..- +
T Consensus 80 ------YfestdglIwvvDssD~-----~r~~e~-~~~L~~lL~eerl--aG~~~Lvlank~dl~~~l~-~~~i~~~~~L 144 (185)
T KOG0073|consen 80 ------YFESTDGLIWVVDSSDR-----MRMQEC-KQELTELLVEERL--AGAPLLVLANKQDLPGALS-LEEISKALDL 144 (185)
T ss_pred ------hhhccCeEEEEEECchH-----HHHHHH-HHHHHHHHhhhhh--cCCceEEEEecCcCccccC-HHHHHHhhCH
Confidence 34568999999999873 222221 1222222111222 2368999999999974322 2222221 1
Q ss_pred HHHHHhCCCCCCCeEEEEecccCcchhhHH
Q 005977 359 RHRAKAGGAPKLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 359 ~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl 388 (666)
..+.+.... .++-+||.+|.++.+=+
T Consensus 145 ~~l~ks~~~----~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 145 EELAKSHHW----RLVKCSAVTGEDLLEGI 170 (185)
T ss_pred HHhccccCc----eEEEEeccccccHHHHH
Confidence 222233333 38889999995544433
No 362
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.38 E-value=0.00016 Score=69.67 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|.+..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999998653
No 363
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.38 E-value=0.00042 Score=67.73 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=36.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
...+++++|.+|||||||+|+|.+...... .+..|.+...+.+. +..+.++||||..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~~---~~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTIG---NIKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEEC---CEEEEEEECCCCH
Confidence 356899999999999999999986542211 11222232222222 2356789999943
No 364
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.38 E-value=0.00022 Score=75.73 Aligned_cols=65 Identities=31% Similarity=0.317 Sum_probs=46.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCCccccccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHPHLMSMRL 470 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~~~~~~~L 470 (666)
++.+||.||+|||||+|+|....- + +..++-||+...--....+ ..+.+.|.||+.....+.--|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-k-----Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl 264 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-K-----VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL 264 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-c-----ccccceeeeccccceeeccccceeEeccCccccccccccCcc
Confidence 688999999999999999986542 3 3588889977421110011 248899999999877655433
No 365
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00071 Score=71.96 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=60.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH---HHHHHHHHHHHh
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT---RLDRWVRHRAKA 364 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~---~L~~wl~~~~k~ 364 (666)
.+--|-.++||.+..+ +..|+.-+..+ +|+=. ..+.+|+|=||+||+.++...+ .+++|++--. .
T Consensus 107 AAlMDgAlLvIaANEp-cPQPQT~EHl~--AleIi--------gik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~-A 174 (415)
T COG5257 107 AALMDGALLVIAANEP-CPQPQTREHLM--ALEII--------GIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTV-A 174 (415)
T ss_pred hhhhcceEEEEecCCC-CCCCchHHHHH--HHhhh--------ccceEEEEecccceecHHHHHHHHHHHHHHhcccc-c
Confidence 3445778899998875 33454433222 23222 3356999999999998765322 2222221100 1
Q ss_pred CCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.+ ..|++|||.++.+++.|+++|.++.|.
T Consensus 175 e~----aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 175 EN----APIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred CC----CceeeehhhhccCHHHHHHHHHHhCCC
Confidence 12 239999999999999999999998764
No 366
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.34 E-value=0.00025 Score=71.06 Aligned_cols=63 Identities=27% Similarity=0.250 Sum_probs=41.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--e--------ecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--V--------SKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~--------~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
.++.++|.+|+|||||+++|+...... . .....-..+|+|.+........ +..+.++||||..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 578999999999999999998641100 0 0001112678888875544322 2367899999975
No 367
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.34 E-value=0.00021 Score=66.45 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|.++|.+|||||||+|+|++..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 58999999999999999998653
No 368
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.34 E-value=0.0004 Score=66.53 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|++....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCc
Confidence 479999999999999999998653
No 369
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.34 E-value=0.0003 Score=69.34 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=33.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|+..... ...+.|+.+.......+.. .+.++||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-------ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-------ccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999854321 1233333222211111222 36789999953
No 370
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.33 E-value=0.00029 Score=73.61 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=49.2
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
+..+.++|.+|||||||||.++...... .+.+..||-|+.+..+. +...++++|.||+-..+.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~---~t~k~K~g~Tq~in~f~--v~~~~~~vDlPG~~~a~y 198 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIA---DTSKSKNGKTQAINHFH--VGKSWYEVDLPGYGRAGY 198 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhh---hhcCCCCccceeeeeee--ccceEEEEecCCcccccC
Confidence 3478999999999999999999766443 24456899998876665 567899999999665543
No 371
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00087 Score=72.12 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=61.7
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |-+.|.. ...-||+.+++||++. |...+.-...++..|- ..+.+++++||+||+.-.
T Consensus 94 PGHeQYTRNMaT------GASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLL----------GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 94 PGHEQYTRNMAT------GASTADLAILLVDARK--GVLEQTRRHSFIASLL----------GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred CcHHHHhhhhhc------ccccccEEEEEEecch--hhHHHhHHHHHHHHHh----------CCcEEEEEEeeecccccC
Confidence 7764 5566654 5677999999999987 5433222222222222 235699999999999754
Q ss_pred CChHHHHHHH---HHHHHhCCCCCCCeEEEEecccCcchhh
Q 005977 349 VSPTRLDRWV---RHRAKAGGAPKLNGVYLVSARKDLGVRN 386 (666)
Q Consensus 349 ~~~~~L~~wl---~~~~k~~g~~~~~~V~~VSAkkg~Gv~e 386 (666)
+ ++..... ..+..++|.. ....+|+||..|.++-.
T Consensus 156 e--~~F~~I~~dy~~fa~~L~~~-~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 E--EVFEAIVADYLAFAAQLGLK-DVRFIPISALLGDNVVS 193 (431)
T ss_pred H--HHHHHHHHHHHHHHHHcCCC-cceEEechhccCCcccc
Confidence 4 2233322 2345677765 44789999999988643
No 372
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0011 Score=65.97 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=64.7
Q ss_pred cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHH
Q 005977 285 PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 285 P~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k 363 (666)
|....+++.+|+|-|+.+.. |+ .-.+..++.|.+... .+.-+.||.||+||.. +....... +.++.
T Consensus 72 pMYyRgA~AAivvYDit~~~-SF--~~aK~WvkeL~~~~~------~~~vialvGNK~DL~~~R~V~~~ea----~~yAe 138 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEE-SF--EKAKNWVKELQRQAS------PNIVIALVGNKADLLERREVEFEEA----QAYAE 138 (200)
T ss_pred cceecCCcEEEEEEecccHH-HH--HHHHHHHHHHHhhCC------CCeEEEEecchhhhhhcccccHHHH----HHHHH
Confidence 44667899999999999854 22 223334455655321 2223556999999997 33332223 33445
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
..|.. .+-+||++|.|+++|+..|.+.+|..
T Consensus 139 ~~gll----~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 139 SQGLL----FFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred hcCCE----EEEEecccccCHHHHHHHHHHhccCc
Confidence 66653 78899999999999999999887653
No 373
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0041 Score=70.29 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 270 PDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 270 P~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
|++--...|..+ ...-+|+|++||-+-| |-.|+.. +.++.... .+.|+|+++||||.- ..
T Consensus 209 PGHaAF~aMRaR-----GA~vtDIvVLVVAadD--GVmpQT~-----EaIkhAk~------A~VpiVvAinKiDkp--~a 268 (683)
T KOG1145|consen 209 PGHAAFSAMRAR-----GANVTDIVVLVVAADD--GVMPQTL-----EAIKHAKS------ANVPIVVAINKIDKP--GA 268 (683)
T ss_pred CcHHHHHHHHhc-----cCccccEEEEEEEccC--CccHhHH-----HHHHHHHh------cCCCEEEEEeccCCC--CC
Confidence 777644455443 5667899999999988 7677543 22332211 457999999999964 22
Q ss_pred ChHHHHHHHHHHH------HhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 350 SPTRLDRWVRHRA------KAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 350 ~~~~L~~wl~~~~------k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.++++ .+++. +.+|- -..++++||++|.|++.|.+.|.-
T Consensus 269 ~pekv---~~eL~~~gi~~E~~GG--dVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 269 NPEKV---KRELLSQGIVVEDLGG--DVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CHHHH---HHHHHHcCccHHHcCC--ceeEEEeecccCCChHHHHHHHHH
Confidence 33332 22322 23332 235899999999999999987753
No 374
>PLN03118 Rab family protein; Provisional
Probab=97.31 E-value=0.00039 Score=69.72 Aligned_cols=57 Identities=26% Similarity=0.404 Sum_probs=37.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+++|+|.+|||||||+|+|+...... .++..|++.....+. ++. .+.|+||||...
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-----LAPTIGVDFKIKQLT--VGGKRLKLTIWDTAGQER 74 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-----cCCCceeEEEEEEEE--ECCEEEEEEEEECCCchh
Confidence 589999999999999999998654211 123334333332222 222 467999999643
No 375
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.30 E-value=0.00044 Score=68.21 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.6
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+|++....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~ 24 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA 24 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 376
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.30 E-value=0.0023 Score=67.32 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=31.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
.+..+|.+++|+|+.+.. .. . ...++..+.. .+.|+++++||+|+....
T Consensus 91 ~l~~aD~~IlVvda~~g~--~~-~-~~~i~~~~~~---------~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 91 TLTAVDSAVMVIDAAKGV--EP-Q-TRKLFEVCRL---------RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHCCEEEEEEECCCCc--cH-H-HHHHHHHHHh---------cCCCEEEEEECCccCCCC
Confidence 445689999999998632 11 1 2334443332 346899999999986543
No 377
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.30 E-value=0.00029 Score=67.17 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+++++...-. ...+.|+.........+.. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-------GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-------cccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999853311 1223333221111111222 367899999874
No 378
>CHL00071 tufA elongation factor Tu
Probab=97.30 E-value=0.00029 Score=78.44 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=43.5
Q ss_pred CccEEEEccCCCChhHHHHhhhcccccee----------ecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV----------SKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~----------~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
..++.++|.+|+|||||+|+|++..+... ........+|+|++........+ ..+.++||||..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 46799999999999999999997532210 11112234899998755443222 357899999943
No 379
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.29 E-value=0.00015 Score=80.71 Aligned_cols=62 Identities=29% Similarity=0.331 Sum_probs=44.5
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCCCccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~~~~~ 466 (666)
+..+.+++|+|||||||++|.+.... +.+-++|.||+.+.- +.++ -.+.++|||||...-..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad------vevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD------DEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc------cccCCcccccchhhh--hhhhhheeeeeecCCccccCcchh
Confidence 34588999999999999999987543 233488889987531 1111 25789999999976543
No 380
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.29 E-value=0.00056 Score=65.40 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=21.0
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++++|.+|||||||+|+|....
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 381
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.29 E-value=0.00092 Score=76.81 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=42.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++..+|.+|+|+|+.+. ... ..+.+++.++. .+.|+++++||+|+.... ...+..-++ ..++
T Consensus 100 ~l~~aD~aIlVvDa~~g--v~~--~t~~l~~~~~~---------~~~PiivviNKiD~~~~~--~~~ll~~i~---~~l~ 161 (527)
T TIGR00503 100 TLTAVDNCLMVIDAAKG--VET--RTRKLMEVTRL---------RDTPIFTFMNKLDRDIRD--PLELLDEVE---NELK 161 (527)
T ss_pred HHHhCCEEEEEEECCCC--CCH--HHHHHHHHHHh---------cCCCEEEEEECccccCCC--HHHHHHHHH---HHhC
Confidence 45679999999999873 222 12344444332 346899999999986433 222333232 3334
Q ss_pred CCCCCeEEEE
Q 005977 367 APKLNGVYLV 376 (666)
Q Consensus 367 ~~~~~~V~~V 376 (666)
...+..++++
T Consensus 162 ~~~~~~~~PI 171 (527)
T TIGR00503 162 INCAPITWPI 171 (527)
T ss_pred CCCccEEEEe
Confidence 3334556777
No 382
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.29 E-value=0.00044 Score=66.71 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=35.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|.+..... ..+..|.++..+.+. +..+.++||||-.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~g~~~~~~~~~---~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKK-----VAPTVGFTPTKLRLD---KYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcc-----ccCcccceEEEEEEC---CEEEEEEECCCcH
Confidence 47899999999999999998652111 123345443333322 2357899999953
No 383
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.28 E-value=0.00062 Score=64.73 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.0
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++++|.+|||||||+|+|+...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999754
No 384
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.28 E-value=0.00058 Score=65.47 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=34.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|+|||||+|+++...... ....|+.+.......++. .+.++||||-..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPE-------EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-------CCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998654221 112233222221111222 356899999643
No 385
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.28 E-value=0.00046 Score=66.18 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=34.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+|++.+..... ....|+.+.......++ -.+.++||||...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIE-------SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-------ccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 68999999999999999998554221 12223322211111122 2457899999653
No 386
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.27 E-value=0.0006 Score=65.22 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+|+++...
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~ 29 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNK 29 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998643
No 387
>COG2262 HflX GTPases [General function prediction only]
Probab=97.26 E-value=0.0003 Score=77.07 Aligned_cols=57 Identities=32% Similarity=0.229 Sum_probs=38.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~ 462 (666)
.|.+||++|+|||||+|+|++...... +...+|++...-...++ ..+.+-||-||..
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~------d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVA------DQLFATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeecc------ccccccccCceeEEEeCCCceEEEecCccCcc
Confidence 688999999999999999997654422 33334444322111133 4678899999984
No 388
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.26 E-value=0.00063 Score=64.75 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=34.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+++|....... ...|.++.+.......+.+ .+.++||||..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999998543211 1122223333221111222 35678999954
No 389
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.25 E-value=0.00038 Score=66.57 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=35.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
+|.++|.+|||||||+|+++...-.... .+..+.+++..+.... ..-.+.++||||...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~---~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESY---IPTIEDTYRQVISCSK-NICTLQITDTTGSHQ 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc---CCcchheEEEEEEECC-EEEEEEEEECCCCCc
Confidence 6899999999999999999865422111 1122223332222211 112467899999753
No 390
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.24 E-value=0.00071 Score=64.57 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+++++...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 391
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.00047 Score=74.96 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=39.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceee-cccccCCCCceeEEEEEeeEeC-----CceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS-KLTEAPIPGTTLGILRIGGILP-----AKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~-~lt~S~~PGTT~~~~~~~~~l~-----~~~~liDTPGi~~~~ 464 (666)
-+++++|.+|.|||||||+|+........ ....+..|-.|..+......+. -+.+++||||+....
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 47999999999999999999977332210 0111222222433332222222 156889999998543
No 392
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.22 E-value=0.00061 Score=65.66 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=33.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeE--EEEEeeEeCCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLG--ILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~--~~~~~~~l~~~~~liDTPGi~~ 462 (666)
+|+++|.+|||||||+|+|...... . +.+|.. ...+.. -+-.+.++||||...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-------~--~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-------Q--PIPTIGFNVETVEY-KNLKFTIWDVGGKHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-------C--cCCcCceeEEEEEE-CCEEEEEEECCCChh
Confidence 4789999999999999999865311 1 222332 212221 123578999999753
No 393
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.22 E-value=0.00027 Score=82.92 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=28.3
Q ss_pred hHHHHHHhh-cCCCccEEEEccCCCChhHHHHhhhccccc
Q 005977 386 NLLAFIKEL-AGPRGNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 386 eLl~~I~~~-l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~ 424 (666)
++..+|... .++..++.++|.+|+|||||+|+|+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~ 50 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKM 50 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCC
Confidence 344555442 223467899999999999999999976543
No 394
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.21 E-value=0.00046 Score=74.67 Aligned_cols=65 Identities=26% Similarity=0.244 Sum_probs=39.1
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCC---ceeEEEEEeeEeC-----CceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG---TTLGILRIGGILP-----AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG---TT~~~~~~~~~l~-----~~~~liDTPGi~~~ 463 (666)
.-+++++|.+|.||||+||+|++....... ......+. .|..+......+. -.+.++|||||...
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~-~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET-EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC-CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 358999999999999999999987432211 00001111 2333322222222 25689999999854
No 395
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.20 E-value=0.00094 Score=77.63 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=42.1
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-C-ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-A-KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~-~~~liDTPGi~ 461 (666)
...|.++|.+|+|||||+|+|.+.... ....+|+|.+.-.....++ . .+.++||||..
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVA------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc------cccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 357999999999999999999865322 2345788877644333232 3 68899999964
No 396
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.19 E-value=0.00044 Score=66.31 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+++++|.+|||||||+|+|........ .....+.+|... .+.. ..-.+.++||||..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPA-DVTP-ERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeee-eecC-CeEEEEEEeCCCch
Confidence 689999999999999999987543211 001122233222 1110 11256799999964
No 397
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.19 E-value=0.00062 Score=64.50 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=33.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|....... ..|.+..+...+.+ -+..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-------~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-------TIPTIGFNVETVTY-KNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-------cCCccCcCeEEEEE-CCEEEEEEECCCCH
Confidence 47899999999999999997543221 12211111212221 12357899999975
No 398
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.19 E-value=0.0018 Score=62.24 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=54.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC---CCCChHHHHHHHHHHHHhC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
..+|.+++|.|+.+... + ..+ ..++..+.... .....|+++|.||.||.. ........+.| .++.
T Consensus 64 ~~~~~~ilv~d~~~~~s-f-~~~-~~~~~~i~~~~-----~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~----~~~~ 131 (158)
T cd04103 64 SWVDAVIFVFSLENEAS-F-QTV-YNLYHQLSSYR-----NISEIPLILVGTQDAISESNPRVIDDARARQL----CADM 131 (158)
T ss_pred hcCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc-----CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHH----HHHh
Confidence 45899999999998532 1 122 22333333221 013458999999999852 22222222333 2332
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
+ .-.++.+||++|.|+++++..+.+
T Consensus 132 ~---~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 K---RCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred C---CCcEEEEecCCCCCHHHHHHHHHh
Confidence 2 113889999999999999988864
No 399
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.18 E-value=0.00039 Score=65.89 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.0
Q ss_pred cEEEEccCCCChhHHHHhhhcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+++++|.+|||||||+++|...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 400
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.17 E-value=0.0071 Score=74.27 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=56.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC--------------hH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS--------------PT 352 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~--------------~~ 352 (666)
....+|++++|+|+.+ |..+.. ...+..+.. .+.|+|+|+||+|+.+.+.. ..
T Consensus 546 g~~~aDivlLVVDa~~--Gi~~qT--~e~I~~lk~---------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 546 GGSLADLAVLVVDINE--GFKPQT--IEAINILRQ---------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred hcccCCEEEEEEECcc--cCCHhH--HHHHHHHHH---------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 4456899999999987 322322 222333333 34689999999999864320 00
Q ss_pred HHHHHHH---HH---HHhCCCC-----------CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 353 RLDRWVR---HR---AKAGGAP-----------KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 353 ~L~~wl~---~~---~k~~g~~-----------~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+.+... .. ....|+. ....+++|||++|.|+++|+..|..+
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111100 00 1122211 13458999999999999999988643
No 401
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.16 E-value=0.00051 Score=81.36 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=43.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--eecc----cc------cCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--VSKL----TE------APIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~~~l----t~------S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.+|.|+|.+|+|||||+|+|+...+.. .+.. ++ -...|+|++.......+. ..+.++||||....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 379999999999999999998643321 1100 00 114688887554433333 36889999999753
No 402
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.16 E-value=0.00085 Score=67.66 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=35.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC----ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA----KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~----~~~liDTPGi~ 461 (666)
+++++|.+|||||||||+|++..... ...|-++.+.......++. .+.|+||||-.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 58999999999999999998653211 2233333443322222322 45789999953
No 403
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.15 E-value=0.00075 Score=63.96 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=33.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+++++|.+|||||||+++++...... ..+.|+.+.......+++ .+.|+||||..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIE-------KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-------CCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 68999999999999999998643221 122232222111111222 35789999964
No 404
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.14 E-value=0.00096 Score=64.17 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+||||||||++++...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 378999999999999999998643
No 405
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.14 E-value=0.00079 Score=65.14 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=35.8
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|.++|.+|||||||+++|...... ...|.++.+...+.. -.-.+.++||||..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-------~~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-------TTIPTVGFNVETVTY-KNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-------cccCCcccceEEEEE-CCEEEEEEECCCCH
Confidence 357999999999999999999754321 122332222222221 12357899999975
No 406
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.14 E-value=0.00063 Score=71.12 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|+|||||+|+|+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~ 23 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYAT 23 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999998654
No 407
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.13 E-value=0.00085 Score=64.78 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=21.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+|++....
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998653
No 408
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0021 Score=64.09 Aligned_cols=96 Identities=23% Similarity=0.212 Sum_probs=61.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+.++.++|.|-|+.+-.. + .....+|-..++.... ...-++||.||.||+.+.+-. .++ -....++++
T Consensus 91 Y~Rds~vaviVyDit~~~S-f-e~t~kWi~dv~~e~gs------~~viI~LVGnKtDL~dkrqvs--~eE-g~~kAkel~ 159 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNS-F-ENTSKWIEDVRRERGS------DDVIIFLVGNKTDLSDKRQVS--IEE-GERKAKELN 159 (221)
T ss_pred hccCCeEEEEEEeccccch-H-HHHHHHHHHHHhccCC------CceEEEEEcccccccchhhhh--HHH-HHHHHHHhC
Confidence 5678999999999998542 2 2234444333322110 234578899999999764310 111 012234444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. ..+.+||+.|.||.+|...|...++.
T Consensus 160 a----~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 160 A----EFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred c----EEEEecccCCCCHHHHHHHHHHhccC
Confidence 2 36789999999999999999987764
No 409
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.09 E-value=0.00077 Score=66.92 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=34.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+++++...... ..+.|+.+.......+.. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-------cCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999998654221 222233222211111222 46789999964
No 410
>PRK12735 elongation factor Tu; Reviewed
Probab=97.09 E-value=0.00062 Score=75.47 Aligned_cols=65 Identities=25% Similarity=0.290 Sum_probs=43.2
Q ss_pred CCccEEEEccCCCChhHHHHhhhcccc------c----eeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEG------V----KVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~------~----~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
+..++.++|.+|+|||||+|+|++... . ...........|+|.+........+ ..+.++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 346799999999999999999986211 0 0011112236799988765443222 357899999963
No 411
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.09 E-value=0.00097 Score=67.29 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=35.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-C---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-A---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||||+|+....... ..|.++.+.......+. . .+.++||||-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC------CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 4799999999999999999996542211 22333333322111121 1 46789999954
No 412
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.08 E-value=0.0011 Score=63.50 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHhhhccc
Q 005977 401 VWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
|+|+|.+|||||||+|+++...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~ 22 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA 22 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC
Confidence 5789999999999999998754
No 413
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.08 E-value=0.0012 Score=63.92 Aligned_cols=56 Identities=27% Similarity=0.220 Sum_probs=34.6
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~ 461 (666)
+|++||.+|||||||+|+++...-.. ...|-+..+.......+. ..+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 68999999999999999999753221 112222223221111122 257899999974
No 414
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.07 E-value=0.0011 Score=63.27 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+|+|....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~ 26 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998653
No 415
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.07 E-value=0.0011 Score=65.99 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+++++...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998653
No 416
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.06 E-value=0.0012 Score=64.75 Aligned_cols=23 Identities=22% Similarity=0.614 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+|+|.+|||||||||+|+...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~ 24 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR 24 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 417
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.06 E-value=0.0012 Score=63.33 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+++++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 418
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.04 E-value=0.00069 Score=64.83 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.1
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++++||.+++|||||+++|.+..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999998754
No 419
>PRK00007 elongation factor G; Reviewed
Probab=97.03 E-value=0.00078 Score=79.87 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=42.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--eecc----------cccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--VSKL----------TEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~~~l----------t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
.+|.++|.+|+|||||+|+|+...+.. .+.+ ..-..+|+|++.......+. ..+.++||||..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 389999999999999999998533221 1100 00136788888654443333 478999999975
No 420
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.02 E-value=0.0017 Score=63.80 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=34.6
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|.++|.+|||||||++++....... ..+..|.....+.. -.-.+.++||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-----~~~T~~~~~~~~~~---~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-----TIPTIGFNVETVEY---KNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-----cCCccccceEEEEE---CCEEEEEEECCCCH
Confidence 4689999999999999999996432211 11112222211111 12357889999974
No 421
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.01 E-value=0.0015 Score=64.96 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~ 24 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI 24 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 422
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.00 E-value=0.0013 Score=67.93 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=37.7
Q ss_pred cEEEEccCCCChhHHHHhhhcccccee--ecc----cc------cCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKV--SKL----TE------APIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~--~~l----t~------S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+|.++|.+|+|||||+++|+...+... +.+ +. ....|+|.......... +..+.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 578999999999999999987543211 100 10 11223444322222112 23678999999964
No 423
>PLN03110 Rab GTPase; Provisional
Probab=97.00 E-value=0.0015 Score=66.06 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=35.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+||||||||++|.+..... ...|.+..+.......++. .+.|+||||-.
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999998654221 1223222232211111222 56789999953
No 424
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.99 E-value=0.0016 Score=62.81 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+++++...-. ...+.|+.+.......+++ .+.++||||...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-------TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCceeeeeeEEEEECCEEEEEEEEECCCChh
Confidence 5899999999999999999764321 1334455443332222332 467899999843
No 425
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.99 E-value=0.0016 Score=63.36 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+|+|+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~ 24 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK 24 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998654
No 426
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.99 E-value=0.0017 Score=63.68 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.7
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+|+|.+|||||||+|+|....
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~ 24 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 427
>PTZ00369 Ras-like protein; Provisional
Probab=96.99 E-value=0.0013 Score=64.82 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+++++...
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~ 29 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNH 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998654
No 428
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.97 E-value=0.00099 Score=59.92 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=33.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeE--EEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLG--ILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~--~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+|+|.+||||||||++|++....... ......+.|.. ...... -...+.+.|++|-.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~ 61 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNS--VPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQE 61 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEEEEEEETT-EEEEEEEEEESSSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccc--cccccCCCcEEEEEEEecC-CceEEEEEecCccc
Confidence 4899999999999999999976543100 01123333333 222211 01136788999984
No 429
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.97 E-value=0.0011 Score=76.96 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=40.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi 460 (666)
.|.++|.+|+|||||+|+|++.. .+.......+|+|.++......++ ..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~---~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA---ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc---CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 58899999999999999998643 111222345788888643322233 35689999994
No 430
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.97 E-value=0.00067 Score=61.04 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=32.4
Q ss_pred EEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe---CCceEEEECCCCCC
Q 005977 403 VIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL---PAKAKLYDTPGLLH 462 (666)
Q Consensus 403 vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l---~~~~~liDTPGi~~ 462 (666)
++|.+|+|||||+|+|++...... ....|..+........ ...+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc------ccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 589999999999999997653211 1111112222222111 23578999999664
No 431
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0011 Score=72.01 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=49.3
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecce-ecc--------eecccccccccCc
Q 005977 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLR-NYG--------QVKNEVAENLIPD 271 (666)
Q Consensus 202 G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr-~yg--------kv~~~~~q~~iP~ 271 (666)
++..-+||-|||||||| |.+.... .....-|++-.+-....-.+-..||..+- .++ -++-...--++|+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 34556899999996666 9888777 33333444421111111112223444432 111 1111111112354
Q ss_pred chHHHHHHHHhcCcccccccCEEEEEEecCC
Q 005977 272 FDFDRVIATRLMKPSGNANAGVVVMVVDCVD 302 (666)
Q Consensus 272 ~df~~~L~~~l~rP~a~~~aDvVL~VVDa~D 302 (666)
-+-.+=|.+++.. .+.++|+|++|||+++
T Consensus 81 As~GeGLGNkFL~--~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKGEGLGNKFLD--NIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcchHHHH--hhhhcCeEEEEEEecC
Confidence 4433333344444 5678999999999983
No 432
>PLN03127 Elongation factor Tu; Provisional
Probab=96.95 E-value=0.001 Score=74.92 Aligned_cols=64 Identities=27% Similarity=0.264 Sum_probs=43.4
Q ss_pred CccEEEEccCCCChhHHHHhhhcccc--ce--------eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEG--VK--------VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~--~~--------~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
..+|.++|..|+|||||+++|.+... .. .........+|+|++........+ ..+.++||||..
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 46899999999999999999974310 00 011112234899999866553322 257899999985
No 433
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.92 E-value=0.0082 Score=60.31 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=33.3
Q ss_pred ccc-CEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 289 ANA-GVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 289 ~~a-DvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
..+ +.||+|+|+.+... ........+...+.... ..+...|+++|+||+|+....
T Consensus 70 ~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~----~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 70 KNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLE----KVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred hccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHh----hccCCCCEEEEecchhhcccC
Confidence 445 99999999998531 12233344434332210 111357999999999997543
No 434
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.91 E-value=0.0025 Score=68.40 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHH
Q 005977 200 LDGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVI 278 (666)
Q Consensus 200 l~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L 278 (666)
..-+..++||++||| |+++|++.++++..++..... .....|..++.. |. .- .-+..|++.-...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~-------t~~~~~~~~~~~---G~-~l--~VIDTPGL~d~~~~ 102 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSE-------GLRPMMVSRTRA---GF-TL--NIIDTPGLIEGGYI 102 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-------ceeEEEEEEEEC---Ce-EE--EEEECCCCCchHHH
Confidence 456777889999999 566699999987554432111 122233333211 11 00 01123665422222
Q ss_pred HHHhcC----cccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 279 ATRLMK----PSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 279 ~~~l~r----P~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
++++.. =......|+|++|..+.... ....+..+++.+...... . --.+.|+|+|++|.++++
T Consensus 103 ~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R---~~~~DkqlLk~Iqe~FG~-~---iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 103 NDQAVNIIKRFLLGKTIDVLLYVDRLDAYR---VDTLDGQVIRAITDSFGK-D---IWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeccCccc---CCHHHHHHHHHHHHHhhh-h---hhccEEEEEECCccCCCC
Confidence 222111 00113588999995443211 112344555555442110 0 113689999999999654
No 435
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.91 E-value=0.0014 Score=64.35 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=35.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE--eCCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI--LPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~--l~~~~~liDTPGi 460 (666)
.+|+++|.+|||||||||+++....... .+..|.+...+.+... ..-.+.++||||.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-----VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-----CCccccceeEEEeeccCCCceEEEEEECCCc
Confidence 4789999999999999999986542210 1122333333333210 0125688999995
No 436
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.91 E-value=0.0021 Score=61.93 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.1
Q ss_pred cEEEEccCCCChhHHHHhhhcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+++++|.+|||||||+|+++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 437
>PRK12739 elongation factor G; Reviewed
Probab=96.91 E-value=0.00099 Score=78.99 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=42.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--eecc----------cccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--VSKL----------TEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~~~l----------t~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
.+|.|+|.+|+|||||+|+|+...+.. .+.+ ..-..+|+|++.......++ ..+.++||||..
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 379999999999999999998643221 1100 01136788887654443333 367899999975
No 438
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.89 E-value=0.0018 Score=62.00 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=33.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|.++|.+|||||||+++|....-. +..|.+..+...+.. -.-.+.++||||..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-------~~~pt~g~~~~~~~~-~~~~~~l~D~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVEY-KNISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-------ccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 6899999999999999999643221 122322111111211 12357899999974
No 439
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.89 E-value=0.0011 Score=67.30 Aligned_cols=62 Identities=27% Similarity=0.226 Sum_probs=42.3
Q ss_pred cEEEEccCCCChhHHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-CceE
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AKAK 453 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~-------------------------~~lt~S~~PGTT~~~~~~~~~l~-~~~~ 453 (666)
+|.++|.+++|||||+.+|+...+... .....-...|+|++......... ..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 578999999999999999975432210 01112236789999766554333 3678
Q ss_pred EEECCCCC
Q 005977 454 LYDTPGLL 461 (666)
Q Consensus 454 liDTPGi~ 461 (666)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999963
No 440
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.89 E-value=0.0017 Score=68.24 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.8
Q ss_pred ccEEEEccCCCChhHHHHhhhcccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
.+|.++|.+|+|||||+|+|+...+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999986543
No 441
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.88 E-value=0.0019 Score=58.03 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=29.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVD 343 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiD 343 (666)
...+|++++|+|+.+.. ++ .....++.+|.... +.. ...|+|||.||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~-s~--~~~~~~~~~l~~~~---~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPE-SL--EYLSQLLKWLKNIR---KRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHH-HH--HHHHHHHHHHHHHH---HHS-SCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCCChH-HH--HHHHHHHHHHHHHH---ccC-CCCCEEEEEeccC
Confidence 35689999999998742 11 11123444454431 111 3479999999998
No 442
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.85 E-value=0.0025 Score=60.92 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=20.5
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++++|.+|||||||+++++...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~ 24 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE 24 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 443
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.82 E-value=0.018 Score=57.12 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred cCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 269 IPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 269 iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
+|++.-.++|.+.+.+ .+.-++++||.+++... -+..+++.+... +..|+++++||.||-+..
T Consensus 75 tPGq~RF~fm~~~l~~-----ga~gaivlVDss~~~~~----~a~~ii~f~~~~--------~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 75 TPGQERFKFMWEILSR-----GAVGAIVLVDSSRPITF----HAEEIIDFLTSR--------NPIPVVVAINKQDLFDAL 137 (187)
T ss_pred CCCcHHHHHHHHHHhC-----CcceEEEEEecCCCcch----HHHHHHHHHhhc--------cCCCEEEEeeccccCCCC
Confidence 4888877788877544 57888999999986532 345566665542 226899999999997655
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. ++.+.+++..-. ... .|+.++|.+++|..+.+..+...
T Consensus 138 p-pe~i~e~l~~~~--~~~----~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 138 P-PEKIREALKLEL--LSV----PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred C-HHHHHHHHHhcc--CCC----ceeeeecccchhHHHHHHHHHhh
Confidence 3 344555443211 233 39999999999999888877654
No 444
>PRK00049 elongation factor Tu; Reviewed
Probab=96.79 E-value=0.0013 Score=72.90 Aligned_cols=64 Identities=25% Similarity=0.233 Sum_probs=43.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccc---e---e----ecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGV---K---V----SKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~---~---~----~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
..++.++|.+++|||||+++|+..... . . ........+|+|++........ +..+.++||||..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 467999999999999999999863111 0 0 0011123689999976554322 2357899999974
No 445
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0066 Score=65.21 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=64.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---Hh
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA---KA 364 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~---k~ 364 (666)
..-.|+.++|||+.. |..++..+..++-.+- -+..++|+||+|++|.......+.+..+... ++
T Consensus 91 aqiiDlm~lviDv~k--G~QtQtAEcLiig~~~-----------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 91 AQIIDLMILVIDVQK--GKQTQTAECLIIGELL-----------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred hheeeeeeEEEehhc--ccccccchhhhhhhhh-----------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 445789999999987 5555554444433222 1357999999999999776666666554444 34
Q ss_pred CCCCCCCeEEEEecccC----cchhhHHHHHHhh
Q 005977 365 GGAPKLNGVYLVSARKD----LGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg----~Gv~eLl~~I~~~ 394 (666)
.++..-..|+.+||+.| .++.+|.+.|...
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 44433345999999999 7788888887654
No 446
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.76 E-value=0.0025 Score=63.98 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=34.2
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE---eCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~ 461 (666)
+++++|.+|+|||||+++|....... ..+.++.....+... -+..+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~-------t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS-------TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-------ccCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 58999999999999999998753221 112222221111100 12467899999965
No 447
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.75 E-value=0.0029 Score=61.49 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+++++...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~ 26 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS 26 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Confidence 378999999999999999998653
No 448
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.75 E-value=0.0028 Score=64.43 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=36.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
.+|++||.+|||||||+++++....... ..+..|++.....+. .. -.+.++||||...
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~--~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFF--TNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEE--ECCeEEEEEEEECCCchh
Confidence 5899999999999999999875432211 122334333332221 11 2568899999754
No 449
>PLN03108 Rab family protein; Provisional
Probab=96.74 E-value=0.0029 Score=63.64 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=34.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+++++|.+|||||||+|+|+........ ....|.+.....+. ++. .+.++||||..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~----~~ti~~~~~~~~i~--~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMIT--IDNKPIKLQIWDTAGQE 66 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 47999999999999999999865322211 11223222211111 111 46789999954
No 450
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.74 E-value=0.0041 Score=64.55 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhc--------CCCccEEEEccCCCChhHHHHhhhcc--ccceeeccc-----------------------
Q 005977 384 VRNLLAFIKELA--------GPRGNVWVIGAQNAGKSTLINTFAKK--EGVKVSKLT----------------------- 430 (666)
Q Consensus 384 v~eLl~~I~~~l--------~~~~~v~vvG~~NvGKSTLIN~L~~~--~~~~~~~lt----------------------- 430 (666)
+..|++.|.++. -.--.+++||.+++||||++|+|++. .....+.+|
T Consensus 4 ~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~ 83 (240)
T smart00053 4 LIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKG 83 (240)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCC
Q ss_pred --------------------ccCCCCceeEEEEEeeEeCC--ceEEEECCCC
Q 005977 431 --------------------EAPIPGTTLGILRIGGILPA--KAKLYDTPGL 460 (666)
Q Consensus 431 --------------------~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi 460 (666)
.....+++-+++.+...-+. .++||||||+
T Consensus 84 ~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl 135 (240)
T smart00053 84 KKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI 135 (240)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCc
No 451
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.73 E-value=0.017 Score=57.61 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=55.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH-------HHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD-------RWVRH 360 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~-------~wl~~ 360 (666)
...++.+++++|..+...+. ...+.+...+..... ...|+++|.||+||.........+. .+...
T Consensus 75 ~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~l~~~~~------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (219)
T COG1100 75 YRGANGILIVYDSTLRESSD--ELTEEWLEELRELAP------DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVL 146 (219)
T ss_pred hcCCCEEEEEEecccchhhh--HHHHHHHHHHHHhCC------CCceEEEEecccccccchhHHHHHHhhhhcCcchhhh
Confidence 35688999999998854332 233344444443210 2468999999999987643211110 01100
Q ss_pred --HHHhCCCCCCCeEEEEecc--cCcchhhHHHHHHhh
Q 005977 361 --RAKAGGAPKLNGVYLVSAR--KDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 --~~k~~g~~~~~~V~~VSAk--kg~Gv~eLl~~I~~~ 394 (666)
........... .+.+|++ .+.++.++...+...
T Consensus 147 ~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~ 183 (219)
T COG1100 147 APKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRK 183 (219)
T ss_pred HhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHH
Confidence 00011001123 7889999 999999888776544
No 452
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.73 E-value=0.0035 Score=61.09 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=34.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
++.++|.+|||||||+++++...-.. ...| |+.+.......++. .+.|+||||-..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~------~~~p-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPS------EYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC------CCCC-ceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999998643211 1122 22222221111222 457899999754
No 453
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.72 E-value=0.0019 Score=76.79 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=39.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-----CCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-----PAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-----~~~~~liDTPGi~ 461 (666)
...|.++|.+|+|||||+++|+..... .+..+|+|.++-.+...+ ...+.++||||..
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIA------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCc------cccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 458999999999999999999865432 134567776533221111 1367899999963
No 454
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.71 E-value=0.007 Score=63.99 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=41.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+++++++++.... +. ...+..+++.|.. ..|+|+|+||+|++.+... ..+...++......+.+
T Consensus 113 ~rvh~~ly~i~~~~~-~l--~~~D~~~lk~l~~----------~v~vi~VinK~D~l~~~e~-~~~k~~i~~~l~~~~i~ 178 (276)
T cd01850 113 TRVHACLYFIEPTGH-GL--KPLDIEFMKRLSK----------RVNIIPVIAKADTLTPEEL-KEFKQRIMEDIEEHNIK 178 (276)
T ss_pred CceEEEEEEEeCCCC-CC--CHHHHHHHHHHhc----------cCCEEEEEECCCcCCHHHH-HHHHHHHHHHHHHcCCc
Confidence 358899999987641 21 2233444554432 3589999999999875432 22333344444555543
Q ss_pred CCCeEEEEec
Q 005977 369 KLNGVYLVSA 378 (666)
Q Consensus 369 ~~~~V~~VSA 378 (666)
++..+.
T Consensus 179 ----~~~~~~ 184 (276)
T cd01850 179 ----IYKFPE 184 (276)
T ss_pred ----eECCCC
Confidence 554443
No 455
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.71 E-value=0.034 Score=56.17 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=32.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhh-------------hhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDD-------------AKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~-------------~~~~~~~kpvILVlNKiDLLpk 347 (666)
...+++++|+|.|+.+.... ..+..++ ..+...... ........|+|||.||+||.+.
T Consensus 74 ~yr~ad~iIlVyDvtn~~Sf--~~l~~W~-~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 74 FYNQVNGIILVHDLTNRKSS--QNLQRWS-LEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HhCcCCEEEEEEECcChHHH--HHHHHHH-HHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 34579999999999985321 1222222 222211000 0001134699999999999865
No 456
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.70 E-value=0.0026 Score=61.27 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=34.1
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.|+++|.+|||||||+++++........ .+..|. +...+.. -+..+.++||||-..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~--~~~~i~~-~~~~l~i~Dt~G~~~ 56 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGF--NSVAIPT-QDAIMELLEIGGSQN 56 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccc----cccCCc--ceEEEee-CCeEEEEEECCCCcc
Confidence 3789999999999999999965322110 111122 1222221 123578899999653
No 457
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=96.69 E-value=0.0012 Score=69.86 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=20.8
Q ss_pred eeccCCCchHHH-HHHHhhhhhhHHHHHHHH
Q 005977 206 AGVGYGNITEEL-VERSKKKKLSKAERKKKA 235 (666)
Q Consensus 206 a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a 235 (666)
++||+||+|||| +|.|.+.+. .+...+.+
T Consensus 2 givG~PN~GKSTLfn~Lt~~~~-~~~n~pft 31 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAGA-EAANYPFC 31 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCCC-cccccccc
Confidence 469999999555 599999986 44444443
No 458
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.65 E-value=0.0018 Score=64.63 Aligned_cols=60 Identities=28% Similarity=0.286 Sum_probs=35.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeeccc-ccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT-EAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt-~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+++++|.+|||||||+|+|.+.........+ ....|+.+...... .-...++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR----NIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC----EEEEEeecCCCHHH
Confidence 47999999999999999999976543221111 11222222111100 01367899999763
No 459
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.65 E-value=0.0032 Score=61.87 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=34.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
..+|.++|.+|||||||+++|....-.. ..|.+..+...+.. -.-.+.++||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-------~~pt~g~~~~~~~~-~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-------ccCCcceeEEEEEE-CCEEEEEEECCCC
Confidence 4589999999999999999997533211 12222222222221 1225789999994
No 460
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.64 E-value=0.0021 Score=71.13 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=42.6
Q ss_pred CccEEEEccCCCChhHHHHhhhcccc------ce----eecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEG------VK----VSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~------~~----~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~ 461 (666)
..++.++|..++|||||+++|++... .. ..........|+|++...+....+ ..+.++||||..
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 46799999999999999999984311 00 011111234899999766553222 257899999974
No 461
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.64 E-value=0.0029 Score=65.77 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+|+++|.+|||||||||+++...... ....|+.+.......+++ .+.|+||+|..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-------~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-------QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-------CCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 58999999999999999998643221 223333332221111222 45689999964
No 462
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.011 Score=65.38 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=63.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
++...|..++|||+.+ |..++..+.. ..|... +.+..|+|+||+|++.... ++..+++......
T Consensus 70 g~~~~d~alLvV~~de--Gl~~qtgEhL--~iLdll--------gi~~giivltk~D~~d~~r----~e~~i~~Il~~l~ 133 (447)
T COG3276 70 GLGGIDYALLVVAADE--GLMAQTGEHL--LILDLL--------GIKNGIIVLTKADRVDEAR----IEQKIKQILADLS 133 (447)
T ss_pred hhcCCceEEEEEeCcc--CcchhhHHHH--HHHHhc--------CCCceEEEEeccccccHHH----HHHHHHHHHhhcc
Confidence 4567899999999976 4444433322 223332 3346799999999986543 5555554444433
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. ...++.+|+++|.|+++|.++|.++.
T Consensus 134 l~-~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 LA-NAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cc-cccccccccccCCCHHHHHHHHHHhh
Confidence 32 34589999999999999999999876
No 463
>PRK12736 elongation factor Tu; Reviewed
Probab=96.63 E-value=0.0022 Score=71.08 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccce----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGL 460 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~----------~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi 460 (666)
+..++.++|..++|||||+++|++..... ......-...|+|++........ ...+.++||||.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 34689999999999999999998632110 00011123679999986555322 236789999994
No 464
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.63 E-value=0.0011 Score=70.76 Aligned_cols=58 Identities=33% Similarity=0.299 Sum_probs=36.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~ 462 (666)
..|.+||++|+|||||||+|.+.......+ -.-|+|+-.....++ ..+.+.||-||..
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~dr------LFATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDR------LFATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccch------hheeccchhhhccCCCCcEEEEeechhhhh
Confidence 368899999999999999999554332221 112333322212233 3457789999984
No 465
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.63 E-value=0.0037 Score=60.80 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=35.1
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+++++|.+|||||||+++|...... ...|.+..+...+.. -.-.+.++||||..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-------~~~~t~~~~~~~~~~-~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-------TTIPTIGFNVETVTY-KNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-------CcCCccccceEEEEE-CCEEEEEEECCCCh
Confidence 368999999999999999999643211 122322222222221 12257889999964
No 466
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.60 E-value=0.00093 Score=65.85 Aligned_cols=63 Identities=32% Similarity=0.359 Sum_probs=40.0
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee------------ecccccCCCCceeEEEEEeeE---eCCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV------------SKLTEAPIPGTTLGILRIGGI---LPAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~------------~~lt~S~~PGTT~~~~~~~~~---l~~~~~liDTPGi~ 461 (666)
.+|.++|..++|||||+++|+...+... .........|.|.+....... -...+.++||||..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4789999999999999999997653211 001112234555554333321 23478999999963
No 467
>PRK09866 hypothetical protein; Provisional
Probab=96.60 E-value=0.0039 Score=72.27 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=30.3
Q ss_pred hhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcccccee
Q 005977 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKV 426 (666)
Q Consensus 385 ~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~ 426 (666)
..|...+.+.-..+..+.++|.+|+|||||+|+|++.....+
T Consensus 56 ~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL~G~~Vlpt 97 (741)
T PRK09866 56 AMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPN 97 (741)
T ss_pred HHHHHHHHHHhccceEEEEECCCCCCHHHHHHHHhCCccccC
Confidence 344444444433446789999999999999999998765543
No 468
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.60 E-value=0.0033 Score=75.31 Aligned_cols=59 Identities=24% Similarity=0.243 Sum_probs=41.5
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
...|.|+|.+|+|||||+++|...... .+..+|+|.+.-.+...+ +..+.++||||...
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~ 349 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVA------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEA 349 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc------ccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence 357999999999999999999764322 234577777654333223 24678999999653
No 469
>PLN03126 Elongation factor Tu; Provisional
Probab=96.58 E-value=0.0029 Score=71.93 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=43.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhcccccee----------ecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKV----------SKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~----------~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
+..++.++|.+|+|||||+++|+...+... .........|+|.+........ +..+.++||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 346789999999999999999996322110 1112234578888865443222 3467899999964
No 470
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.54 E-value=0.0029 Score=70.68 Aligned_cols=63 Identities=27% Similarity=0.277 Sum_probs=42.4
Q ss_pred CccEEEEccCCCChhHHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-Cc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AK 451 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~-------------------------~~lt~S~~PGTT~~~~~~~~~l~-~~ 451 (666)
..++.++|.+++|||||+++|+...+... .........|+|++........+ ..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 35789999999999999999986432210 00011235689988765543332 26
Q ss_pred eEEEECCCC
Q 005977 452 AKLYDTPGL 460 (666)
Q Consensus 452 ~~liDTPGi 460 (666)
+.++||||.
T Consensus 87 i~iiDtpGh 95 (426)
T TIGR00483 87 VTIVDCPGH 95 (426)
T ss_pred EEEEECCCH
Confidence 789999994
No 471
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.54 E-value=0.0055 Score=59.69 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+||||||||.+++...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~ 25 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA 25 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998643
No 472
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.52 E-value=0.003 Score=65.26 Aligned_cols=73 Identities=29% Similarity=0.291 Sum_probs=49.6
Q ss_pred ecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEE
Q 005977 377 SARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLY 455 (666)
Q Consensus 377 SAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~li 455 (666)
|+-+|.|.+-+.. ...+|.+||.|.||||||+..|...+... ..+-.||+.++.-...+ +..+.++
T Consensus 48 s~~kg~GFeV~Ks-------GdaRValIGfPSVGKStlLs~iT~T~Sea------A~yeFTTLtcIpGvi~y~ga~IQll 114 (364)
T KOG1486|consen 48 SSGKGEGFEVLKS-------GDARVALIGFPSVGKSTLLSKITSTHSEA------ASYEFTTLTCIPGVIHYNGANIQLL 114 (364)
T ss_pred CCCCCCCeeeecc-------CCeEEEEecCCCccHHHHHHHhhcchhhh------hceeeeEEEeecceEEecCceEEEe
Confidence 3446777655432 12489999999999999999998654221 24455787765422212 4578999
Q ss_pred ECCCCCC
Q 005977 456 DTPGLLH 462 (666)
Q Consensus 456 DTPGi~~ 462 (666)
|.|||..
T Consensus 115 DLPGIie 121 (364)
T KOG1486|consen 115 DLPGIIE 121 (364)
T ss_pred cCccccc
Confidence 9999974
No 473
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.51 E-value=0.0065 Score=59.64 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+++++...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~ 25 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC 25 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 478999999999999999998653
No 474
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.49 E-value=0.0036 Score=63.67 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.9
Q ss_pred cEEEEccCCCChhHHHHhhhcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+|+++|.+|||||||+++++..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~ 23 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG 23 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999754
No 475
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.48 E-value=0.0062 Score=61.31 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=39.1
Q ss_pred EEEEeCCCCCCC-CCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 336 VLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 336 ILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
++|+||+|+.+. ......+.++++.+ .. ...++.+||++|.|+++|+++|.+++
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~--~~----~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKM--RG----EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHh--CC----CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 889999999853 22334445555443 12 23499999999999999999998753
No 476
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.46 E-value=0.0067 Score=65.85 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=38.1
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhCC--CC-CCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 336 VLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG--AP-KLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 336 ILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g--~~-~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
|+|+||+|+++.... ......++....... .+ .-..|+++||+++.|+++|++.|.++++
T Consensus 198 IiVVNKaDl~~~~~a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 198 LIVINKADGDNKTAA-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eEEeehhcccchhHH-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999876531 112222222221111 00 0134999999999999999999988754
No 477
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.46 E-value=0.0066 Score=59.79 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=20.7
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.+|||||||+++++...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~ 24 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY 24 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
No 478
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.43 E-value=0.0027 Score=64.02 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++.++|.+++|||||+++|+...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 479
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.42 E-value=0.0058 Score=62.50 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=33.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
+++++|.+|||||||+++++...... ..|-+..+...... -.-.+.|+||||-..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-------~~~Tig~~~~~~~~-~~~~l~iwDt~G~e~ 56 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-------TVSTVGGAFYLKQW-GPYNISIWDTAGREQ 56 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-------CCCccceEEEEEEe-eEEEEEEEeCCCccc
Confidence 68999999999999999998654221 11211112211111 112578999999753
No 480
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.42 E-value=0.0036 Score=72.81 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.9
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.|.++|.+|+|||||+|+|++..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~ 28 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSA 28 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999764
No 481
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.40 E-value=0.0053 Score=71.87 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=39.7
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGL 460 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi 460 (666)
.|.++|.+|+|||||+|+|.+.. ..........|+|.++.......+ ..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~---~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN---ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 47889999999999999998643 122223355788887643222122 24679999996
No 482
>PTZ00416 elongation factor 2; Provisional
Probab=96.39 E-value=0.013 Score=71.20 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL 345 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLL 345 (666)
++..+|.+++|||+.+ |..+. .+.++..+.. .+.|+|+++||+|++
T Consensus 112 al~~~D~ailVvda~~--g~~~~--t~~~~~~~~~---------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 112 ALRVTDGALVVVDCVE--GVCVQ--TETVLRQALQ---------ERIRPVLFINKVDRA 157 (836)
T ss_pred HHhcCCeEEEEEECCC--CcCcc--HHHHHHHHHH---------cCCCEEEEEEChhhh
Confidence 5567999999999988 33332 2344444433 345899999999997
No 483
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.015 Score=58.77 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...++-|++|.|+.+-... +.+..|++... +......+.+||.||+|+-.+. ...++-++ ++.++|
T Consensus 82 yrgA~gi~LvyDitne~Sf------eni~~W~~~I~---e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~----lA~e~G 148 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSF------ENIRNWIKNID---EHASDDVVKILVGNKCDLEEKRQVSKERGEA----LAREYG 148 (207)
T ss_pred HhhcCeeEEEEEccchHHH------HHHHHHHHHHH---hhCCCCCcEEEeeccccccccccccHHHHHH----HHHHhC
Confidence 3468899999999874321 22233433221 1122457899999999998643 33333333 445667
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+ .+.+||+.|.+|++.+-.|..
T Consensus 149 ~~----F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 149 IK----FFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred Ce----EEEccccCCCCHHHHHHHHHH
Confidence 64 788999999999997776654
No 484
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.30 E-value=0.026 Score=68.59 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=53.4
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ +|...+.. ++..+|.+++|||+.... .... +.++..+.. .+.|+|+++||+|++--+
T Consensus 106 PGh~dF~~e~~~------al~~~D~ailVvda~~Gv--~~~t--~~~~~~~~~---------~~~p~i~~iNK~D~~~~~ 166 (843)
T PLN00116 106 PGHVDFSSEVTA------ALRITDGALVVVDCIEGV--CVQT--ETVLRQALG---------ERIRPVLTVNKMDRCFLE 166 (843)
T ss_pred CCHHHHHHHHHH------HHhhcCEEEEEEECCCCC--cccH--HHHHHHHHH---------CCCCEEEEEECCcccchh
Confidence 765 35554443 455689999999998743 3221 223333332 346899999999998321
Q ss_pred C--C----hHHHHHHHHHHH--------HhCCC----CCCCeEEEEecccCcc
Q 005977 349 V--S----PTRLDRWVRHRA--------KAGGA----PKLNGVYLVSARKDLG 383 (666)
Q Consensus 349 ~--~----~~~L~~wl~~~~--------k~~g~----~~~~~V~~VSAkkg~G 383 (666)
. . ...+...+.... +.++. |--.+|.|-|+..++.
T Consensus 167 ~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~ 219 (843)
T PLN00116 167 LQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 219 (843)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEE
Confidence 1 1 123344443332 11211 2234678888877754
No 485
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.27 E-value=0.0027 Score=60.79 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHhhhccccc
Q 005977 401 VWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~~~~ 424 (666)
|+|+|..++|||||||+|++....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~il 24 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPIL 24 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-S
T ss_pred CEEEcCCCCCHHHHHHHHHhcccC
Confidence 689999999999999999987543
No 486
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=96.27 E-value=0.0079 Score=63.17 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=86.6
Q ss_pred eeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecc-eecceecccc-----cccccCcchHHHHH
Q 005977 206 AGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSL-RNYGQVKNEV-----AENLIPDFDFDRVI 278 (666)
Q Consensus 206 a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rL-r~ygkv~~~~-----~q~~iP~~df~~~L 278 (666)
+.+|+-||| ++|||-+...|+..-.-|. .....-|..|+.. ++|-.+.... ..+..|. ++.++-
T Consensus 140 ~~~g~SNVGKSSLln~~~r~k~~~~t~k~--------K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~-d~~~~t 210 (320)
T KOG2486|consen 140 AFYGRSNVGKSSLLNDLVRVKNIADTSKS--------KNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPA-DWDKFT 210 (320)
T ss_pred eeecCCcccHHHHHhhhhhhhhhhhhcCC--------CCccceeeeeeeccceEEEEecCCcccccCCccCcc-hHhHhH
Confidence 558999999 7888999988865433332 2344566666644 2333332211 1122221 222221
Q ss_pred HHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC--C--h-HH
Q 005977 279 ATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV--S--P-TR 353 (666)
Q Consensus 279 ~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~--~--~-~~ 353 (666)
...+.. . ++---++++||+.-+.-. .|...++++.+ .+.|..+|+||+|...+.. . + ..
T Consensus 211 ~~Y~le--R-~nLv~~FLLvd~sv~i~~----~D~~~i~~~ge---------~~VP~t~vfTK~DK~k~~~~~~kKp~~~ 274 (320)
T KOG2486|consen 211 KSYLLE--R-ENLVRVFLLVDASVPIQP----TDNPEIAWLGE---------NNVPMTSVFTKCDKQKKVKRTGKKPGLN 274 (320)
T ss_pred HHHHHh--h-hhhheeeeeeeccCCCCC----CChHHHHHHhh---------cCCCeEEeeehhhhhhhccccccCcccc
Confidence 111111 0 112246888998765322 24445677776 4579999999999875432 0 0 11
Q ss_pred HHHHHHHHHHhCCCCCCCe---EEEEecccCcchhhHHHHHHhhc
Q 005977 354 LDRWVRHRAKAGGAPKLNG---VYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~---V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+...++.+.+ +. +.. -+++|+.++.|++.|+-.|.+.+
T Consensus 275 i~~~f~~l~~--~~--f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 275 IKINFQGLIR--GV--FLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ceeehhhccc--cc--eeccCCceeeecccccCceeeeeehhhhh
Confidence 1111111100 00 111 34699999999999988877653
No 487
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.27 E-value=0.0068 Score=62.00 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=36.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
+..|.++|.+|+|||||+|+|++.... .+.+...|+. .+... ....+.++||||.
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~----~~~~~~~g~i-~i~~~---~~~~i~~vDtPg~ 93 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTK----QNISDIKGPI-TVVTG---KKRRLTFIECPND 93 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhccc----CccccccccE-EEEec---CCceEEEEeCCch
Confidence 457899999999999999999865221 1223456642 11111 2457789999984
No 488
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.27 E-value=0.0096 Score=60.00 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=34.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.|+++|.+||||||||++++...-... ..|.++.+.......+++ .+.++||+|-.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~------~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA------CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc------CCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 588999999999999999986432211 112222332211111222 45789999964
No 489
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.26 E-value=0.024 Score=67.80 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=35.5
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
|++. |...+.+ ++..+|.+++|||+... ..+. .+.++..... .+.|.|+++||+|+..
T Consensus 95 PG~~df~~~~~~------~l~~~D~avlVvda~~g--~~~~--t~~~~~~~~~---------~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 95 PGHVDFGGDVTR------AMRAVDGAIVVVDAVEG--VMPQ--TETVLRQALR---------ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCccChHHHHHH------HHHhcCEEEEEEECCCC--CCcc--HHHHHHHHHH---------cCCCeEEEEECchhhc
Confidence 7653 5444433 45678999999999873 2221 2233333222 2236799999999874
No 490
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.25 E-value=0.0096 Score=58.47 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.4
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+++++|.+|+|||||+|+|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~ 24 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG 24 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999743
No 491
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.21 E-value=0.053 Score=54.55 Aligned_cols=91 Identities=23% Similarity=0.205 Sum_probs=56.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-CCCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-k~~~~~~L~~wl~~~~k~~g 366 (666)
+...+..++|.++.+.. | .+....+.+.+.+.. .....|++||.||+||.. +....+.-+ .+...++
T Consensus 72 ~~~~~gF~lVysitd~~-S--F~~~~~l~~~I~r~~-----~~~~~PivlVGNK~Dl~~~R~V~~eeg~----~la~~~~ 139 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRS-S--FEEAKQLREQILRVK-----GRDDVPIILVGNKCDLERERQVSEEEGK----ALARSWG 139 (196)
T ss_pred hccCcEEEEEEECCCHH-H--HHHHHHHHHHHHHhh-----CcCCCCEEEEEEcccchhccccCHHHHH----HHHHhcC
Confidence 34567888899988753 2 233344444442211 113459999999999986 333322222 2234444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. . .+-+||+...++++++..|...
T Consensus 140 ~---~-f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 140 C---A-FIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred C---c-EEEeeccCCcCHHHHHHHHHHH
Confidence 3 2 7889999999999998877653
No 492
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.18 E-value=0.013 Score=61.15 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=62.5
Q ss_pred CCCceeeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHH---
Q 005977 200 LDGFTPAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFD--- 275 (666)
Q Consensus 200 l~G~~~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~--- 275 (666)
......+++|++|+| |+++|.|.+.+...+... ...+.-|+.+....+..++. -+..|++...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~---------~~~T~~~~~~~~~~~g~~i~----vIDTPGl~~~~~~ 95 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAF---------QSETLRVREVSGTVDGFKLN----IIDTPGLLESVMD 95 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------CCceEEEEEEEEEECCeEEE----EEECCCcCcchhh
Confidence 356677889999999 556699999875332211 11233333332211000110 0113554311
Q ss_pred HHHHH----HhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 276 RVIAT----RLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 276 ~~L~~----~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
....+ .+.+=......++|++|..+.... ....+..+++.+..... ... -.++++|+||+|.+++..
T Consensus 96 ~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r---~~~~d~~llk~I~e~fG-~~i---~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 96 QRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR---RDYLDLPLLRAITDSFG-PSI---WRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC---CCHHHHHHHHHHHHHhC-hhh---HhCEEEEEeCCccCCCCC
Confidence 11111 111100012567888886443321 11234455565554211 000 136999999999997654
No 493
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.15 E-value=0.01 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.5
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+|+++|.++||||||+++|....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHhhc
Confidence 48899999999999999998654
No 494
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.12 E-value=0.0096 Score=67.70 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.2
Q ss_pred CCccEEEEccCCCChhHHHHhhhcccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
+..++.++|.+|+|||||+++|+...+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g 52 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTK 52 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcC
Confidence 346899999999999999999986644
No 495
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.10 E-value=0.038 Score=58.13 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=53.0
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---HhC--
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA---KAG-- 365 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~---k~~-- 365 (666)
--+|++|||... .+-|......++-+.. -+.+.+-|+|+|+||+|+....- ..+|+..+- .++
T Consensus 148 ptvv~YvvDt~r--s~~p~tFMSNMlYAcS------ilyktklp~ivvfNK~Dv~d~~f----a~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 148 PTVVVYVVDTPR--STSPTTFMSNMLYACS------ILYKTKLPFIVVFNKTDVSDSEF----ALEWMTDFEAFQEALNE 215 (366)
T ss_pred CeEEEEEecCCc--CCCchhHHHHHHHHHH------HHHhccCCeEEEEecccccccHH----HHHHHHHHHHHHHHHHh
Confidence 458999999765 3344433333222111 01224568999999999986654 677775431 000
Q ss_pred ---C----------------CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 ---G----------------APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 ---g----------------~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+ +.. -.++-|||.+|.|.++++..|.+.
T Consensus 216 ~~~~y~s~l~~SmSL~leeFY~~-lrtv~VSs~tG~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 216 AESSYMSNLTRSMSLMLEEFYRS-LRTVGVSSVTGEGFDDFFTAVDES 262 (366)
T ss_pred hccchhHHhhhhHHHHHHHHHhh-CceEEEecccCCcHHHHHHHHHHH
Confidence 0 001 126677888888888877777543
No 496
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.06 E-value=0.044 Score=57.72 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=62.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC--------CChHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ--------VSPTRLDRWVR 359 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~--------~~~~~L~~wl~ 359 (666)
+...|+|++++|+-|..-..+....+. +.... ..+++++|+|-+|..-+- .....++.+++
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~d----Vi~~~-------~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRD----VIILG-------LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHH----HHHhc-------cCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 345889999999988765555333222 22111 236899999999987441 11223455554
Q ss_pred HHHHhCCC--CCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 360 HRAKAGGA--PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 360 ~~~k~~g~--~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
+.....+. .....|+.+|+..+||++.|...+...+|.
T Consensus 184 ~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 184 EKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 43322210 013348889999999999999999887763
No 497
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.02 E-value=0.019 Score=57.78 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 334 KLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 334 pvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.++|+||+|+.+... ....+..+++ ... + ...++.+||+++.|+++|++.|.++
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~----~~~-~-~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAK----KIN-P-EAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHH----HhC-C-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999985422 1222333322 222 1 3459999999999999999999764
No 498
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.02 E-value=0.016 Score=57.73 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|..+||||||++++....... ...|..+.+.......++. .+.++||||-..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~------~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTES------PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 579999999999999999998643211 0112223332211111222 457899999753
No 499
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.00 E-value=0.071 Score=53.07 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=57.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC---CCCChHHHHHHHHHHHHhC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
..+|..++|-|..++.... .++.+=-+.|.+... ..+..=|+||+.||+|+-. +..+..+.+.|-+. +.
T Consensus 80 RgaDcCvlvydv~~~~Sfe--~L~~Wr~EFl~qa~~---~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s---~g 151 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFE--NLENWRKEFLIQASP---QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS---KG 151 (210)
T ss_pred cCCceEEEEeecCChhhhc--cHHHHHHHHHHhcCC---CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh---cC
Confidence 5688888888887653221 122222223332110 0112348999999999965 44555666777432 22
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+| .|-+||+...+|++....+..
T Consensus 152 nip----yfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 152 NIP----YFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred Cce----eEEecccccccHHHHHHHHHH
Confidence 343 788999999999998887764
No 500
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.98 E-value=0.017 Score=56.89 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.6
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++++|.+|||||||+++++...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~ 24 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE 24 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
Done!