Query 005977
Match_columns 666
No_of_seqs 466 out of 3315
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ec1_A YQEH GTPase; atnos1, at 100.0 9.8E-59 3.3E-63 501.6 28.0 334 245-616 36-369 (369)
2 3h2y_A GTPase family protein; 100.0 1.6E-57 5.5E-62 492.0 26.4 334 245-616 34-368 (368)
3 2hjg_A GTP-binding protein ENG 99.9 4.6E-25 1.6E-29 242.8 10.4 216 203-465 4-238 (436)
4 1mky_A Probable GTP-binding pr 99.9 3E-24 1E-28 236.4 11.8 214 205-463 4-241 (439)
5 4dcu_A GTP-binding protein ENG 99.9 3.6E-23 1.2E-27 228.9 11.5 217 203-466 24-259 (456)
6 1puj_A YLQF, conserved hypothe 99.9 5.4E-22 1.8E-26 206.9 14.1 163 269-466 6-181 (282)
7 3cnl_A YLQF, putative uncharac 99.8 1.7E-20 5.8E-25 193.6 5.9 142 287-465 18-159 (262)
8 1t9h_A YLOQ, probable GTPase E 99.7 3.4E-17 1.2E-21 172.8 6.2 156 287-466 83-240 (307)
9 2yv5_A YJEQ protein; hydrolase 99.7 5.1E-16 1.7E-20 163.1 13.7 154 287-465 76-231 (302)
10 1u0l_A Probable GTPase ENGC; p 99.6 3.7E-15 1.3E-19 156.3 11.5 154 287-465 81-236 (301)
11 2rcn_A Probable GTPase ENGC; Y 99.6 3.4E-15 1.2E-19 160.5 11.3 152 287-465 127-283 (358)
12 3iev_A GTP-binding protein ERA 99.5 2.6E-14 9.1E-19 150.2 6.3 160 201-398 10-183 (308)
13 1ega_A Protein (GTP-binding pr 99.4 3.2E-13 1.1E-17 141.6 5.3 157 204-398 10-176 (301)
14 1wf3_A GTP-binding protein; GT 99.3 3.1E-13 1.1E-17 141.9 4.5 158 202-398 8-174 (301)
15 1x3s_A RAS-related protein RAB 99.3 4.7E-12 1.6E-16 121.0 6.4 110 288-413 85-194 (195)
16 1svi_A GTP-binding protein YSX 99.2 2.7E-10 9.4E-15 109.0 13.4 90 289-395 104-193 (195)
17 4dhe_A Probable GTP-binding pr 99.1 4.8E-11 1.6E-15 117.1 6.0 97 288-397 113-211 (223)
18 3pqc_A Probable GTP-binding pr 99.1 1.4E-10 4.9E-15 110.3 7.6 92 288-396 102-193 (195)
19 2hjg_A GTP-binding protein ENG 99.1 3.7E-10 1.3E-14 124.0 11.3 112 287-421 254-365 (436)
20 2dyk_A GTP-binding protein; GT 99.1 2.5E-10 8.6E-15 105.3 8.4 85 287-395 76-160 (161)
21 2qu8_A Putative nucleolar GTP- 99.1 1E-09 3.6E-14 108.9 13.0 96 289-394 107-202 (228)
22 3t5g_A GTP-binding protein RHE 99.1 1.6E-10 5.6E-15 109.2 6.7 106 287-413 74-180 (181)
23 3q72_A GTP-binding protein RAD 99.0 5.6E-10 1.9E-14 103.6 9.9 157 203-394 3-161 (166)
24 3tkl_A RAS-related protein RAB 99.0 6.3E-10 2.1E-14 106.4 10.3 90 288-394 86-176 (196)
25 1ek0_A Protein (GTP-binding pr 99.0 6.6E-10 2.3E-14 103.0 9.2 96 288-396 73-168 (170)
26 3i8s_A Ferrous iron transport 99.0 2.1E-10 7.3E-15 118.3 5.9 152 203-397 4-169 (274)
27 3gee_A MNME, tRNA modification 99.0 7.9E-10 2.7E-14 123.1 10.9 157 201-396 232-397 (476)
28 3iby_A Ferrous iron transport 99.0 2.5E-10 8.7E-15 116.9 6.4 147 205-394 4-164 (256)
29 1mky_A Probable GTP-binding pr 99.0 3.1E-10 1.1E-14 124.7 6.4 112 287-422 260-372 (439)
30 1zd9_A ADP-ribosylation factor 99.0 3.4E-09 1.2E-13 101.6 12.7 97 288-396 88-184 (188)
31 4dcu_A GTP-binding protein ENG 99.0 1.6E-09 5.3E-14 119.7 11.3 93 287-395 274-367 (456)
32 1z0j_A RAB-22, RAS-related pro 99.0 2.8E-09 9.7E-14 98.8 11.0 92 288-396 76-168 (170)
33 1g16_A RAS-related protein SEC 99.0 1.6E-09 5.5E-14 100.5 9.2 91 288-395 73-163 (170)
34 2efe_B Small GTP-binding prote 99.0 3.7E-09 1.3E-13 99.5 11.7 92 288-396 82-174 (181)
35 1r8s_A ADP-ribosylation factor 99.0 7.2E-09 2.5E-13 95.9 13.5 98 287-396 64-161 (164)
36 3cph_A RAS-related protein SEC 99.0 2E-09 6.8E-14 104.4 10.1 91 288-395 90-180 (213)
37 2gj8_A MNME, tRNA modification 98.9 2.3E-10 7.7E-15 108.9 3.1 85 287-395 80-164 (172)
38 2nzj_A GTP-binding protein REM 98.9 1.5E-09 5E-14 101.5 8.3 91 288-394 75-166 (175)
39 1r2q_A RAS-related protein RAB 98.9 3.2E-09 1.1E-13 98.3 10.6 92 288-396 76-168 (170)
40 4dsu_A GTPase KRAS, isoform 2B 98.9 2.4E-09 8.3E-14 101.3 9.9 91 288-394 73-163 (189)
41 1zbd_A Rabphilin-3A; G protein 98.9 6.1E-09 2.1E-13 100.5 12.4 91 287-394 77-168 (203)
42 1z0f_A RAB14, member RAS oncog 98.9 3.3E-09 1.1E-13 99.2 10.2 90 288-394 85-175 (179)
43 3q85_A GTP-binding protein REM 98.9 2.5E-09 8.5E-14 99.5 9.2 91 288-394 73-164 (169)
44 3dz8_A RAS-related protein RAB 98.9 3.9E-09 1.3E-13 101.2 10.7 91 287-394 92-183 (191)
45 2fg5_A RAB-22B, RAS-related pr 98.9 4.6E-09 1.6E-13 101.0 11.1 92 288-396 93-185 (192)
46 4bas_A ADP-ribosylation factor 98.9 9.7E-10 3.3E-14 105.3 6.3 165 200-394 15-186 (199)
47 1upt_A ARL1, ADP-ribosylation 98.9 7.7E-09 2.6E-13 96.2 12.2 97 287-395 71-167 (171)
48 3t1o_A Gliding protein MGLA; G 98.9 5E-09 1.7E-13 99.6 11.1 96 287-394 94-189 (198)
49 1kao_A RAP2A; GTP-binding prot 98.9 2.5E-09 8.7E-14 98.5 8.6 91 288-394 72-163 (167)
50 2g6b_A RAS-related protein RAB 98.9 7.2E-09 2.5E-13 97.4 11.7 92 287-395 80-172 (180)
51 1xzp_A Probable tRNA modificat 98.9 1.7E-09 5.7E-14 120.7 8.4 83 287-394 320-402 (482)
52 3clv_A RAB5 protein, putative; 98.9 1.1E-08 3.6E-13 97.3 12.8 88 288-394 114-201 (208)
53 3izq_1 HBS1P, elongation facto 98.9 2.4E-09 8.2E-14 122.7 9.8 172 200-387 165-362 (611)
54 2wji_A Ferrous iron transport 98.9 2.4E-09 8.2E-14 100.6 8.2 84 289-395 80-163 (165)
55 1z08_A RAS-related protein RAB 98.9 5E-09 1.7E-13 97.3 10.2 92 287-395 75-167 (170)
56 2hup_A RAS-related protein RAB 98.9 8.6E-09 2.9E-13 100.2 11.8 92 287-394 98-190 (201)
57 2ce2_X GTPase HRAS; signaling 98.9 6.6E-09 2.3E-13 95.4 10.3 92 288-395 72-163 (166)
58 1lnz_A SPO0B-associated GTP-bi 98.9 2.1E-09 7.1E-14 114.9 7.7 97 287-396 233-329 (342)
59 3b1v_A Ferrous iron uptake tra 98.9 1.4E-09 4.8E-14 112.5 6.2 85 289-396 79-163 (272)
60 3tw8_B RAS-related protein RAB 98.9 2.9E-09 1E-13 99.8 7.8 90 287-394 78-168 (181)
61 2gf0_A GTP-binding protein DI- 98.9 7.5E-09 2.6E-13 99.0 10.8 95 288-397 77-171 (199)
62 3con_A GTPase NRAS; structural 98.9 1.4E-08 4.8E-13 96.7 12.5 92 287-394 89-180 (190)
63 1c1y_A RAS-related protein RAP 98.9 5.3E-09 1.8E-13 96.7 9.2 92 288-394 72-164 (167)
64 2y8e_A RAB-protein 6, GH09086P 98.9 4.8E-09 1.6E-13 98.1 9.0 92 288-396 84-176 (179)
65 1zj6_A ADP-ribosylation factor 98.9 4.6E-09 1.6E-13 100.2 9.0 96 288-396 81-177 (187)
66 2bcg_Y Protein YP2, GTP-bindin 98.9 6.3E-09 2.2E-13 100.8 10.1 92 287-395 77-169 (206)
67 1f6b_A SAR1; gtpases, N-termin 98.9 2.2E-09 7.4E-14 104.4 6.8 99 287-394 89-196 (198)
68 2gf9_A RAS-related protein RAB 98.9 3E-09 1E-13 101.7 7.6 91 287-394 91-182 (189)
69 2b6h_A ADP-ribosylation factor 98.9 1.1E-08 3.8E-13 98.7 11.6 96 288-395 94-189 (192)
70 3kkq_A RAS-related protein M-R 98.9 7.1E-09 2.4E-13 98.0 10.0 91 288-394 87-179 (183)
71 1wms_A RAB-9, RAB9, RAS-relate 98.9 2.7E-08 9.4E-13 93.1 13.9 96 287-394 76-171 (177)
72 1ksh_A ARF-like protein 2; sma 98.9 3.5E-09 1.2E-13 100.6 7.8 99 287-397 82-180 (186)
73 3reg_A RHO-like small GTPase; 98.9 5.9E-09 2E-13 100.1 9.3 93 287-395 91-186 (194)
74 3j2k_7 ERF3, eukaryotic polype 98.9 9.6E-09 3.3E-13 113.1 12.2 173 201-389 16-217 (439)
75 1fzq_A ADP-ribosylation factor 98.8 1.4E-08 4.9E-13 96.8 11.9 98 287-396 80-177 (181)
76 2hxs_A RAB-26, RAS-related pro 98.8 1.3E-08 4.4E-13 95.5 11.3 95 288-396 77-172 (178)
77 3lvq_E ARF-GAP with SH3 domain 98.8 7.4E-09 2.5E-13 115.1 11.1 155 201-396 321-483 (497)
78 3a1s_A Iron(II) transport prot 98.8 2.8E-09 9.5E-14 109.2 7.1 84 289-395 82-165 (258)
79 2p5s_A RAS and EF-hand domain 98.8 6E-09 2.1E-13 100.7 9.1 91 288-395 98-195 (199)
80 2fn4_A P23, RAS-related protei 98.8 4.4E-09 1.5E-13 98.6 7.8 91 288-394 78-169 (181)
81 2oil_A CATX-8, RAS-related pro 98.8 5.5E-09 1.9E-13 100.0 8.5 90 288-394 95-185 (193)
82 3o47_A ADP-ribosylation factor 98.8 1.1E-08 3.8E-13 108.3 11.7 158 202-396 165-326 (329)
83 1u8z_A RAS-related protein RAL 98.8 6.4E-09 2.2E-13 95.8 8.6 91 288-394 73-164 (168)
84 3bc1_A RAS-related protein RAB 98.8 1.6E-08 5.6E-13 95.6 11.3 92 287-394 90-182 (195)
85 2fu5_C RAS-related protein RAB 98.8 4.5E-09 1.5E-13 99.4 7.3 91 287-394 77-168 (183)
86 2ew1_A RAS-related protein RAB 98.8 1E-08 3.5E-13 100.3 9.9 91 287-394 95-186 (201)
87 2h17_A ADP-ribosylation factor 98.8 1.6E-08 5.3E-13 96.2 10.9 95 287-393 85-179 (181)
88 2il1_A RAB12; G-protein, GDP, 98.8 1E-08 3.4E-13 98.7 9.7 91 288-394 96-187 (192)
89 2erx_A GTP-binding protein DI- 98.8 7.7E-09 2.6E-13 95.9 8.5 95 288-397 72-167 (172)
90 1m2o_B GTP-binding protein SAR 98.8 2.1E-09 7E-14 103.7 4.7 99 287-394 87-189 (190)
91 4djt_A GTP-binding nuclear pro 98.8 2.6E-09 8.9E-14 104.5 5.4 92 288-396 82-174 (218)
92 3mca_A HBS1, elongation factor 98.8 1.2E-09 4.1E-14 124.8 3.3 100 287-396 275-396 (592)
93 2bme_A RAB4A, RAS-related prot 98.8 2.1E-08 7E-13 94.9 11.3 91 287-394 79-170 (186)
94 2a9k_A RAS-related protein RAL 98.8 1.2E-08 4.2E-13 96.0 9.7 91 288-394 87-178 (187)
95 1vg8_A RAS-related protein RAB 98.8 1.2E-08 4.1E-13 98.4 9.8 96 287-394 77-172 (207)
96 2a5j_A RAS-related protein RAB 98.8 9.7E-09 3.3E-13 98.5 8.8 90 288-394 91-181 (191)
97 1mh1_A RAC1; GTP-binding, GTPa 98.8 1E-08 3.5E-13 96.7 8.6 94 287-396 73-179 (186)
98 2f7s_A C25KG, RAS-related prot 98.8 5.8E-08 2E-12 94.7 14.2 92 287-394 104-196 (217)
99 2yc2_C IFT27, small RAB-relate 98.8 1.6E-08 5.4E-13 97.3 10.0 91 287-394 93-189 (208)
100 1z06_A RAS-related protein RAB 98.8 2.1E-08 7E-13 95.8 10.5 92 288-395 91-186 (189)
101 2o52_A RAS-related protein RAB 98.8 1.1E-08 3.9E-13 99.2 8.6 91 287-394 94-185 (200)
102 1z2a_A RAS-related protein RAB 98.8 1E-08 3.5E-13 94.9 7.8 89 288-394 75-164 (168)
103 4gzl_A RAS-related C3 botulinu 98.8 8E-09 2.7E-13 100.7 7.3 96 287-394 98-202 (204)
104 2bov_A RAla, RAS-related prote 98.8 2.9E-08 1E-12 95.4 11.0 91 288-394 83-174 (206)
105 2qtf_A Protein HFLX, GTP-bindi 98.8 2.4E-08 8.3E-13 107.5 11.3 99 287-395 254-352 (364)
106 1wxq_A GTP-binding protein; st 98.8 5.1E-09 1.7E-13 114.1 5.7 56 333-397 215-271 (397)
107 2g3y_A GTP-binding protein GEM 98.7 2E-08 6.8E-13 99.8 9.4 91 288-394 109-200 (211)
108 2h57_A ADP-ribosylation factor 98.7 6.8E-08 2.3E-12 92.3 12.8 99 287-395 87-185 (190)
109 3bwd_D RAC-like GTP-binding pr 98.7 7.4E-09 2.5E-13 97.5 5.9 92 287-394 76-178 (182)
110 3cbq_A GTP-binding protein REM 98.7 4.2E-08 1.4E-12 95.1 11.4 92 288-395 94-186 (195)
111 2x77_A ADP-ribosylation factor 98.7 1.3E-08 4.4E-13 97.1 7.5 97 287-395 86-182 (189)
112 1moz_A ARL1, ADP-ribosylation 98.7 1.9E-08 6.7E-13 94.8 8.6 96 287-395 82-178 (183)
113 2gco_A H9, RHO-related GTP-bin 98.7 2.8E-08 9.5E-13 96.3 9.8 92 287-394 93-197 (201)
114 2fh5_B SR-beta, signal recogni 98.7 1.8E-07 6E-12 91.1 15.5 101 288-394 76-213 (214)
115 2j1l_A RHO-related GTP-binding 98.7 3.6E-08 1.2E-12 96.7 10.6 92 287-394 102-206 (214)
116 2q3h_A RAS homolog gene family 98.7 1.1E-08 3.9E-13 98.4 6.8 92 287-394 88-192 (201)
117 2atx_A Small GTP binding prote 98.7 2.9E-08 9.9E-13 95.0 9.6 92 287-394 86-190 (194)
118 3geh_A MNME, tRNA modification 98.7 9.9E-09 3.4E-13 113.9 7.1 152 201-396 223-383 (462)
119 3oes_A GTPase rhebl1; small GT 98.7 5.6E-09 1.9E-13 101.1 4.5 93 287-395 92-185 (201)
120 2lkc_A Translation initiation 98.7 2E-08 6.7E-13 94.2 8.0 89 287-394 75-168 (178)
121 2e87_A Hypothetical protein PH 98.7 5E-10 1.7E-14 119.7 -3.3 117 333-463 89-227 (357)
122 2wjg_A FEOB, ferrous iron tran 98.7 9.1E-09 3.1E-13 97.7 5.6 87 289-398 84-170 (188)
123 2fv8_A H6, RHO-related GTP-bin 98.7 1.8E-08 6E-13 98.2 7.5 92 287-394 93-197 (207)
124 3cpj_B GTP-binding protein YPT 98.7 1.1E-08 3.8E-13 100.9 5.9 93 287-396 82-175 (223)
125 3tr5_A RF-3, peptide chain rel 98.7 7.2E-08 2.4E-12 108.7 13.2 27 372-398 252-278 (528)
126 3p26_A Elongation factor 1 alp 98.7 5.5E-08 1.9E-12 108.2 12.1 103 270-387 119-228 (483)
127 3k53_A Ferrous iron transport 98.7 1.2E-08 4.2E-13 104.5 6.3 85 289-395 80-164 (271)
128 3lxw_A GTPase IMAP family memb 98.7 4.8E-08 1.7E-12 99.0 10.6 166 201-396 20-207 (247)
129 3sjy_A Translation initiation 98.7 7.5E-08 2.5E-12 104.6 12.8 109 270-397 83-192 (403)
130 2e87_A Hypothetical protein PH 98.7 8.7E-08 3E-12 102.3 13.0 90 289-395 245-334 (357)
131 3q3j_B RHO-related GTP-binding 98.7 3E-08 1E-12 97.6 8.6 92 287-394 95-200 (214)
132 1wb1_A Translation elongation 98.7 5.7E-08 1.9E-12 108.3 11.9 163 201-394 18-186 (482)
133 2atv_A RERG, RAS-like estrogen 98.7 6.2E-08 2.1E-12 93.2 10.1 91 288-394 96-188 (196)
134 2iwr_A Centaurin gamma 1; ANK 98.7 7.9E-08 2.7E-12 90.4 10.5 93 289-394 71-166 (178)
135 2cxx_A Probable GTP-binding pr 98.7 4.5E-08 1.6E-12 92.7 8.5 58 331-395 121-182 (190)
136 2cjw_A GTP-binding protein GEM 98.6 4.3E-08 1.5E-12 94.8 8.2 90 289-394 79-169 (192)
137 3gj0_A GTP-binding nuclear pro 98.6 5.4E-09 1.8E-13 102.7 1.7 89 288-395 85-173 (221)
138 3cb4_D GTP-binding protein LEP 98.6 7E-08 2.4E-12 110.3 11.0 128 269-421 78-216 (599)
139 3qq5_A Small GTP-binding prote 98.6 7.6E-09 2.6E-13 113.6 2.9 156 203-396 35-195 (423)
140 1ky3_A GTP-binding protein YPT 98.6 1.5E-07 5.2E-12 88.0 11.1 96 287-394 78-175 (182)
141 2zej_A Dardarin, leucine-rich 98.6 4E-08 1.4E-12 93.9 7.0 99 288-395 77-176 (184)
142 2c78_A Elongation factor TU-A; 98.6 1.1E-07 3.6E-12 103.4 11.2 110 269-397 82-212 (405)
143 1jwy_B Dynamin A GTPase domain 98.6 1.3E-08 4.5E-13 105.6 3.8 105 277-398 156-263 (315)
144 1m7b_A RND3/RHOE small GTP-bin 98.6 5.9E-08 2E-12 92.4 7.5 92 287-394 75-180 (184)
145 2j0v_A RAC-like GTP-binding pr 98.6 2.7E-08 9.1E-13 96.8 5.0 93 287-395 77-178 (212)
146 3l0i_B RAS-related protein RAB 98.6 1.8E-09 6.2E-14 104.4 -3.5 93 287-396 102-195 (199)
147 4a9a_A Ribosome-interacting GT 98.6 2.4E-08 8.1E-13 108.0 4.9 58 400-463 74-132 (376)
148 3ihw_A Centg3; RAS, centaurin, 98.6 3.8E-07 1.3E-11 87.3 12.7 90 290-394 85-177 (184)
149 3th5_A RAS-related C3 botulinu 98.0 6.5E-09 2.2E-13 100.7 0.0 95 287-393 98-201 (204)
150 1s0u_A EIF-2-gamma, translatio 98.6 3.9E-07 1.3E-11 99.1 14.0 97 287-396 101-197 (408)
151 1gwn_A RHO-related GTP-binding 98.6 7.6E-08 2.6E-12 94.3 7.4 92 287-394 96-201 (205)
152 2xtp_A GTPase IMAP family memb 98.6 3.5E-08 1.2E-12 99.8 5.1 163 202-396 22-207 (260)
153 1zun_B Sulfate adenylate trans 98.6 2.3E-07 8E-12 101.7 11.8 100 269-386 111-213 (434)
154 1kk1_A EIF2gamma; initiation o 98.5 1.7E-07 5.9E-12 101.9 10.3 98 287-397 103-200 (410)
155 3llu_A RAS-related GTP-binding 98.5 1.4E-07 4.6E-12 91.1 8.4 98 288-394 93-194 (196)
156 4dkx_A RAS-related protein RAB 98.5 2.7E-07 9.3E-12 92.0 10.7 91 288-395 83-174 (216)
157 3c5c_A RAS-like protein 12; GD 98.5 3E-07 1E-11 88.1 10.6 93 288-394 89-183 (187)
158 3iev_A GTP-binding protein ERA 98.5 7E-08 2.4E-12 101.2 6.6 62 398-464 10-73 (308)
159 1f60_A Elongation factor EEF1A 98.5 4.2E-07 1.4E-11 100.5 13.1 102 270-388 93-203 (458)
160 3dpu_A RAB family protein; roc 98.5 1E-07 3.5E-12 107.1 7.7 88 289-397 120-208 (535)
161 1d2e_A Elongation factor TU (E 98.5 5.1E-07 1.8E-11 97.9 12.8 110 269-397 73-195 (397)
162 3t5d_A Septin-7; GTP-binding p 98.5 1E-07 3.6E-12 97.8 6.7 89 290-396 115-203 (274)
163 2ywe_A GTP-binding protein LEP 98.5 6.7E-07 2.3E-11 102.1 13.9 104 269-397 80-184 (600)
164 2wkq_A NPH1-1, RAS-related C3 98.5 1.6E-07 5.6E-12 97.2 7.9 92 287-394 223-327 (332)
165 1wf3_A GTP-binding protein; GT 98.5 1.2E-07 4.1E-12 99.3 6.5 61 399-464 8-69 (301)
166 3r7w_A Gtpase1, GTP-binding pr 98.5 1.2E-07 4E-12 99.3 6.4 98 287-393 77-177 (307)
167 1pui_A ENGB, probable GTP-bind 98.5 4.4E-07 1.5E-11 87.9 10.0 93 289-397 107-199 (210)
168 3lxx_A GTPase IMAP family memb 98.5 6.6E-07 2.3E-11 89.4 11.2 166 202-395 29-212 (239)
169 1jny_A EF-1-alpha, elongation 98.5 9.1E-07 3.1E-11 97.1 13.2 101 270-387 92-203 (435)
170 3zvr_A Dynamin-1; hydrolase, D 98.4 2.5E-07 8.7E-12 108.0 7.6 88 289-393 186-274 (772)
171 3lxw_A GTPase IMAP family memb 98.4 2.2E-07 7.4E-12 94.2 6.0 64 398-465 21-85 (247)
172 2aka_B Dynamin-1; fusion prote 98.4 2.8E-07 9.6E-12 94.6 6.7 90 289-394 160-250 (299)
173 1h65_A Chloroplast outer envel 98.4 4.2E-07 1.4E-11 93.0 7.4 62 398-464 39-101 (270)
174 2gj8_A MNME, tRNA modification 98.4 3.9E-07 1.3E-11 86.4 6.5 61 398-463 4-65 (172)
175 3def_A T7I23.11 protein; chlor 98.4 5.1E-07 1.8E-11 92.0 7.6 76 384-464 22-98 (262)
176 3i8s_A Ferrous iron transport 98.3 5.9E-07 2E-11 92.5 7.5 61 398-464 3-64 (274)
177 2elf_A Protein translation elo 98.3 1.2E-06 3.9E-11 94.5 10.1 104 270-396 68-179 (370)
178 4dhe_A Probable GTP-binding pr 98.3 3.4E-07 1.1E-11 89.5 5.2 63 398-464 29-93 (223)
179 3avx_A Elongation factor TS, e 98.3 3.2E-06 1.1E-10 102.2 14.5 111 269-397 366-486 (1289)
180 3iby_A Ferrous iron transport 98.3 6.9E-07 2.4E-11 91.3 7.2 59 400-464 3-62 (256)
181 1svi_A GTP-binding protein YSX 98.3 5.5E-07 1.9E-11 85.8 6.0 62 398-465 23-84 (195)
182 2www_A Methylmalonic aciduria 98.3 8.5E-08 2.9E-12 102.5 -0.2 90 288-395 185-277 (349)
183 1xzp_A Probable tRNA modificat 98.3 2E-07 6.8E-12 104.0 2.5 61 398-463 243-305 (482)
184 2xex_A Elongation factor G; GT 98.3 3E-06 1E-10 98.4 12.4 48 287-347 95-142 (693)
185 4a9a_A Ribosome-interacting GT 98.3 2.5E-07 8.7E-12 100.0 3.0 112 205-344 75-194 (376)
186 3pqc_A Probable GTP-binding pr 98.3 1.1E-06 3.7E-11 83.3 7.0 58 399-463 24-81 (195)
187 3gee_A MNME, tRNA modification 98.3 3.4E-07 1.2E-11 101.9 3.9 61 398-463 233-294 (476)
188 2x2e_A Dynamin-1; nitration, h 98.3 5E-07 1.7E-11 96.3 5.0 89 289-393 166-254 (353)
189 2j69_A Bacterial dynamin-like 98.3 5E-07 1.7E-11 105.0 5.2 97 287-395 197-323 (695)
190 3izy_P Translation initiation 98.2 5.3E-07 1.8E-11 101.7 5.2 92 287-395 72-166 (537)
191 1f5n_A Interferon-induced guan 98.2 5.5E-07 1.9E-11 102.6 4.8 72 387-465 27-106 (592)
192 1udx_A The GTP-binding protein 98.2 2.4E-06 8.1E-11 93.6 9.5 91 288-395 233-323 (416)
193 1r5b_A Eukaryotic peptide chai 98.2 4E-06 1.4E-10 92.9 11.3 92 287-388 141-243 (467)
194 1dar_A EF-G, elongation factor 98.2 7.2E-06 2.5E-10 95.2 13.8 27 372-398 257-283 (691)
195 3lxx_A GTPase IMAP family memb 98.2 1E-06 3.5E-11 88.0 5.6 61 399-465 30-93 (239)
196 1g7s_A Translation initiation 98.2 1.2E-06 4.2E-11 100.0 6.7 95 287-395 90-216 (594)
197 1ega_A Protein (GTP-binding pr 98.2 1E-06 3.5E-11 92.1 5.4 58 399-461 9-67 (301)
198 3a1s_A Iron(II) transport prot 98.2 1.7E-06 5.8E-11 88.4 6.9 60 399-464 6-66 (258)
199 3t5d_A Septin-7; GTP-binding p 98.2 1.3E-06 4.3E-11 89.7 5.8 65 399-463 9-78 (274)
200 3b1v_A Ferrous iron uptake tra 98.2 1.4E-06 4.7E-11 90.0 5.5 59 399-463 4-62 (272)
201 3k53_A Ferrous iron transport 98.2 2.4E-06 8.1E-11 87.4 7.2 59 399-463 4-63 (271)
202 2h5e_A Peptide chain release f 98.1 8E-06 2.7E-10 92.0 11.9 48 287-347 102-149 (529)
203 2cxx_A Probable GTP-binding pr 98.1 1.9E-06 6.3E-11 81.5 5.4 55 400-463 3-57 (190)
204 2xtp_A GTPase IMAP family memb 98.1 1.8E-06 6.3E-11 87.2 5.6 62 398-464 22-85 (260)
205 2f9l_A RAB11B, member RAS onco 98.1 7.1E-06 2.4E-10 79.1 9.5 89 289-394 76-165 (199)
206 3geh_A MNME, tRNA modification 98.1 5.8E-07 2E-11 99.7 1.9 61 398-463 224-285 (462)
207 2wji_A Ferrous iron transport 98.1 2.3E-06 7.9E-11 80.1 5.6 59 399-463 4-63 (165)
208 2aka_B Dynamin-1; fusion prote 98.1 3.4E-06 1.2E-10 86.5 7.1 25 399-423 27-51 (299)
209 2wjg_A FEOB, ferrous iron tran 98.1 4.2E-06 1.4E-10 79.1 7.2 59 399-463 8-67 (188)
210 3p32_A Probable GTPase RV1496/ 98.1 3E-06 1E-10 90.4 6.6 90 289-396 191-283 (355)
211 2dyk_A GTP-binding protein; GT 98.1 2.5E-06 8.5E-11 78.2 4.9 60 400-464 3-63 (161)
212 1wxq_A GTP-binding protein; st 98.1 1.7E-06 5.6E-11 94.2 3.9 37 400-442 2-38 (397)
213 1jal_A YCHF protein; nucleotid 98.0 1.8E-06 6.1E-11 92.9 3.9 59 399-463 3-79 (363)
214 2qu8_A Putative nucleolar GTP- 98.0 5.6E-06 1.9E-10 81.8 6.7 60 398-463 29-89 (228)
215 1pui_A ENGB, probable GTP-bind 98.0 3.3E-06 1.1E-10 81.6 4.7 61 397-463 25-85 (210)
216 1jwy_B Dynamin A GTPase domain 98.0 4.1E-06 1.4E-10 86.8 5.7 25 399-423 25-49 (315)
217 2ohf_A Protein OLA1, GTP-bindi 98.0 2.8E-06 9.6E-11 92.4 4.3 62 397-464 21-100 (396)
218 2x2e_A Dynamin-1; nitration, h 98.0 4E-06 1.4E-10 89.3 5.2 25 399-423 32-56 (353)
219 2qtf_A Protein HFLX, GTP-bindi 98.0 6.7E-06 2.3E-10 88.4 6.6 56 401-462 182-238 (364)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 7.3E-06 2.5E-10 89.1 6.9 63 397-464 19-99 (392)
221 4dsu_A GTPase KRAS, isoform 2B 98.0 1.1E-05 3.7E-10 75.9 7.0 57 399-462 5-64 (189)
222 3tw8_B RAS-related protein RAB 98.0 9.9E-06 3.4E-10 75.5 6.6 57 399-461 10-69 (181)
223 1zo1_I IF2, translation initia 97.9 1.1E-05 3.6E-10 90.5 7.7 90 287-393 71-163 (501)
224 2j69_A Bacterial dynamin-like 97.9 1.1E-05 3.8E-10 93.7 8.0 49 384-437 55-103 (695)
225 1u8z_A RAS-related protein RAL 97.9 1.4E-05 4.8E-10 73.2 7.0 56 399-461 5-63 (168)
226 1kao_A RAP2A; GTP-binding prot 97.9 1.5E-05 5.1E-10 72.9 7.0 56 399-461 4-62 (167)
227 2nzj_A GTP-binding protein REM 97.9 1.1E-05 3.8E-10 74.9 6.1 57 399-462 5-64 (175)
228 2dy1_A Elongation factor G; tr 97.9 4.4E-05 1.5E-09 88.2 12.5 26 372-397 249-274 (665)
229 2y8e_A RAB-protein 6, GH09086P 97.9 1.3E-05 4.5E-10 74.5 6.6 57 399-461 15-74 (179)
230 3q72_A GTP-binding protein RAD 97.9 6.5E-06 2.2E-10 75.9 4.3 58 399-462 3-61 (166)
231 1z0j_A RAB-22, RAS-related pro 97.9 1.3E-05 4.3E-10 73.9 6.2 57 399-461 7-66 (170)
232 1wms_A RAB-9, RAB9, RAS-relate 97.9 1.5E-05 5.1E-10 74.3 6.7 56 399-460 8-66 (177)
233 1yrb_A ATP(GTP)binding protein 97.9 7.6E-06 2.6E-10 82.2 4.9 98 287-396 135-256 (262)
234 2g6b_A RAS-related protein RAB 97.9 1.7E-05 5.7E-10 74.2 6.8 58 399-461 11-71 (180)
235 2p67_A LAO/AO transport system 97.9 1E-05 3.4E-10 86.0 5.8 86 289-395 168-259 (341)
236 2fn4_A P23, RAS-related protei 97.9 1.9E-05 6.5E-10 73.5 7.0 57 399-462 10-69 (181)
237 1nrj_B SR-beta, signal recogni 97.9 3.7E-05 1.3E-09 74.7 9.3 86 289-383 81-170 (218)
238 1fzq_A ADP-ribosylation factor 97.9 9.5E-06 3.2E-10 77.1 4.8 56 398-461 16-71 (181)
239 2bov_A RAla, RAS-related prote 97.9 1.9E-05 6.6E-10 75.5 7.0 56 399-461 15-73 (206)
240 1ek0_A Protein (GTP-binding pr 97.9 1.5E-05 5.3E-10 73.2 6.0 57 399-461 4-63 (170)
241 1oix_A RAS-related protein RAB 97.9 1.9E-05 6.7E-10 75.8 6.9 89 289-394 100-189 (191)
242 2rdo_7 EF-G, elongation factor 97.9 7.9E-05 2.7E-09 86.7 13.3 27 372-398 263-289 (704)
243 2a9k_A RAS-related protein RAL 97.8 2.2E-05 7.4E-10 73.5 7.0 56 399-461 19-77 (187)
244 2wsm_A Hydrogenase expression/ 97.8 2.7E-05 9.1E-10 76.0 7.8 82 291-395 130-212 (221)
245 3tkl_A RAS-related protein RAB 97.8 2E-05 6.8E-10 74.8 6.7 57 399-461 17-76 (196)
246 1g16_A RAS-related protein SEC 97.8 1.2E-05 4.2E-10 74.0 5.1 57 399-461 4-63 (170)
247 2lkc_A Translation initiation 97.8 6.9E-06 2.4E-10 76.7 3.2 60 397-462 7-67 (178)
248 1z2a_A RAS-related protein RAB 97.8 1.7E-05 5.7E-10 73.0 5.7 57 399-461 6-65 (168)
249 2ged_A SR-beta, signal recogni 97.8 1.4E-05 4.7E-10 76.0 5.3 57 398-463 48-104 (193)
250 1c1y_A RAS-related protein RAP 97.8 2.4E-05 8.2E-10 71.8 6.7 57 399-462 4-63 (167)
251 3con_A GTPase NRAS; structural 97.8 2.6E-05 8.8E-10 73.9 7.0 56 399-461 22-80 (190)
252 3c5h_A Glucocorticoid receptor 97.8 3.9E-05 1.3E-09 77.8 8.7 89 290-394 162-252 (255)
253 2bme_A RAB4A, RAS-related prot 97.8 2.3E-05 7.7E-10 73.8 6.5 57 399-461 11-70 (186)
254 2ce2_X GTPase HRAS; signaling 97.8 2.9E-05 1E-09 70.7 7.0 57 399-462 4-63 (166)
255 1z08_A RAS-related protein RAB 97.8 2.4E-05 8.3E-10 72.2 6.4 57 399-461 7-66 (170)
256 3r7w_A Gtpase1, GTP-binding pr 97.8 1.4E-05 4.6E-10 83.6 5.2 59 398-461 3-63 (307)
257 3t34_A Dynamin-related protein 97.8 2E-05 6.8E-10 84.0 6.6 86 287-390 169-254 (360)
258 2x77_A ADP-ribosylation factor 97.8 2.5E-05 8.6E-10 74.1 6.6 69 386-462 9-78 (189)
259 3cph_A RAS-related protein SEC 97.8 2E-05 6.8E-10 76.0 5.8 58 398-461 20-80 (213)
260 1ksh_A ARF-like protein 2; sma 97.8 2.3E-05 7.8E-10 74.0 6.1 57 397-461 17-73 (186)
261 1moz_A ARL1, ADP-ribosylation 97.8 2.7E-05 9.3E-10 73.0 6.5 58 397-462 17-74 (183)
262 1z0f_A RAB14, member RAS oncog 97.8 2.9E-05 9.9E-10 72.1 6.6 57 399-461 16-75 (179)
263 1vg8_A RAS-related protein RAB 97.8 2.5E-05 8.7E-10 74.9 6.3 57 399-461 9-68 (207)
264 3t5g_A GTP-binding protein RHE 97.8 3.5E-05 1.2E-09 72.3 7.0 58 399-463 7-67 (181)
265 1upt_A ARL1, ADP-ribosylation 97.8 2.3E-05 7.8E-10 72.4 5.6 57 397-461 6-62 (171)
266 1r2q_A RAS-related protein RAB 97.8 2.7E-05 9.4E-10 71.5 6.0 57 399-461 7-66 (170)
267 2ged_A SR-beta, signal recogni 97.8 8.1E-05 2.8E-09 70.6 9.4 26 201-226 47-73 (193)
268 2h17_A ADP-ribosylation factor 97.7 2.7E-05 9.1E-10 73.6 5.7 56 398-461 21-76 (181)
269 1zj6_A ADP-ribosylation factor 97.7 4.8E-05 1.6E-09 72.1 7.4 58 397-462 15-72 (187)
270 3vqt_A RF-3, peptide chain rel 97.7 0.00018 6.3E-09 81.3 13.5 59 270-347 108-167 (548)
271 2fg5_A RAB-22B, RAS-related pr 97.7 2.9E-05 9.8E-10 74.2 5.8 58 398-461 23-83 (192)
272 2qpt_A EH domain-containing pr 97.7 8.1E-06 2.8E-10 92.4 2.2 50 287-348 185-234 (550)
273 2dby_A GTP-binding protein; GD 97.7 1.4E-05 4.9E-10 86.1 4.0 58 400-463 3-82 (368)
274 2il1_A RAB12; G-protein, GDP, 97.7 3.4E-05 1.2E-09 73.8 6.2 57 399-461 27-86 (192)
275 1z06_A RAS-related protein RAB 97.7 3.5E-05 1.2E-09 73.2 6.3 56 399-460 21-79 (189)
276 3clv_A RAB5 protein, putative; 97.7 3.4E-05 1.2E-09 72.8 6.1 25 398-422 7-31 (208)
277 1lnz_A SPO0B-associated GTP-bi 97.7 1E-05 3.5E-10 86.3 2.6 57 400-462 160-218 (342)
278 2oil_A CATX-8, RAS-related pro 97.7 3.8E-05 1.3E-09 73.0 6.3 58 399-462 26-86 (193)
279 2erx_A GTP-binding protein DI- 97.7 2.4E-05 8.3E-10 72.0 4.8 60 399-462 4-63 (172)
280 3qq5_A Small GTP-binding prote 97.7 1.4E-05 4.9E-10 87.6 3.6 62 398-464 34-97 (423)
281 2gf9_A RAS-related protein RAB 97.7 4.7E-05 1.6E-09 72.3 6.8 58 399-462 23-83 (189)
282 2q3h_A RAS homolog gene family 97.7 4.3E-05 1.5E-09 73.2 6.4 58 398-462 20-80 (201)
283 3zvr_A Dynamin-1; hydrolase, D 97.7 5.4E-05 1.8E-09 88.5 8.3 51 373-423 15-76 (772)
284 2efe_B Small GTP-binding prote 97.7 4.5E-05 1.5E-09 71.2 6.3 57 399-461 13-72 (181)
285 2bcg_Y Protein YP2, GTP-bindin 97.7 3.4E-05 1.2E-09 74.3 5.6 58 399-462 9-69 (206)
286 3q85_A GTP-binding protein REM 97.7 3.7E-05 1.3E-09 71.0 5.5 58 399-462 3-63 (169)
287 1m2o_B GTP-binding protein SAR 97.7 4.2E-05 1.4E-09 73.3 6.1 57 398-462 23-79 (190)
288 1zbd_A Rabphilin-3A; G protein 97.7 5.5E-05 1.9E-09 72.5 6.8 57 399-461 9-68 (203)
289 2o52_A RAS-related protein RAB 97.7 3.3E-05 1.1E-09 74.5 5.2 56 399-460 26-84 (200)
290 3kkq_A RAS-related protein M-R 97.7 6.2E-05 2.1E-09 70.7 6.9 56 399-461 19-77 (183)
291 3gj0_A GTP-binding nuclear pro 97.6 3.2E-05 1.1E-09 75.6 4.8 57 399-461 16-75 (221)
292 1mh1_A RAC1; GTP-binding, GTPa 97.6 5.6E-05 1.9E-09 70.8 6.3 56 399-461 6-64 (186)
293 4gzl_A RAS-related C3 botulinu 97.6 6.1E-05 2.1E-09 73.0 6.6 57 398-461 30-89 (204)
294 4bas_A ADP-ribosylation factor 97.6 4.7E-05 1.6E-09 72.4 5.6 57 399-461 18-74 (199)
295 3c5c_A RAS-like protein 12; GD 97.6 7.5E-05 2.6E-09 71.2 7.0 57 399-462 22-81 (187)
296 1x3s_A RAS-related protein RAB 97.6 5.5E-05 1.9E-09 71.5 6.0 57 399-461 16-75 (195)
297 2a5j_A RAS-related protein RAB 97.6 5.6E-05 1.9E-09 72.0 5.9 57 399-461 22-81 (191)
298 1f6b_A SAR1; gtpases, N-termin 97.6 4.4E-05 1.5E-09 73.7 5.1 58 397-462 24-81 (198)
299 2fu5_C RAS-related protein RAB 97.6 2.1E-05 7.1E-10 74.0 2.7 57 399-461 9-68 (183)
300 2ew1_A RAS-related protein RAB 97.6 6.5E-05 2.2E-09 73.1 6.3 56 399-460 27-85 (201)
301 3oes_A GTPase rhebl1; small GT 97.6 6.1E-05 2.1E-09 72.5 6.1 57 399-462 25-84 (201)
302 3reg_A RHO-like small GTPase; 97.6 8.2E-05 2.8E-09 70.9 6.9 56 399-461 24-82 (194)
303 2hxs_A RAB-26, RAS-related pro 97.6 3.1E-05 1.1E-09 72.2 3.7 58 399-462 7-68 (178)
304 2p5s_A RAS and EF-hand domain 97.6 6E-05 2.1E-09 72.4 5.8 58 398-461 28-88 (199)
305 3cbq_A GTP-binding protein REM 97.6 4.6E-05 1.6E-09 73.5 4.9 58 399-462 24-84 (195)
306 2fv8_A H6, RHO-related GTP-bin 97.6 6.1E-05 2.1E-09 72.9 5.8 57 399-462 26-85 (207)
307 2fh5_B SR-beta, signal recogni 97.6 7.6E-05 2.6E-09 72.3 6.4 55 398-461 7-65 (214)
308 3bc1_A RAS-related protein RAB 97.6 9.5E-05 3.3E-09 69.4 6.8 24 399-422 12-35 (195)
309 2wkq_A NPH1-1, RAS-related C3 97.6 0.00014 4.7E-09 75.1 8.5 66 389-461 146-214 (332)
310 2qpt_A EH domain-containing pr 97.6 4.4E-05 1.5E-09 86.4 5.2 38 399-439 66-103 (550)
311 1ky3_A GTP-binding protein YPT 97.6 3.4E-05 1.2E-09 71.8 3.5 56 399-460 9-68 (182)
312 4djt_A GTP-binding nuclear pro 97.6 6.6E-05 2.3E-09 72.9 5.7 59 399-462 12-73 (218)
313 1r8s_A ADP-ribosylation factor 97.6 6E-05 2E-09 69.2 5.0 54 400-461 2-55 (164)
314 1jal_A YCHF protein; nucleotid 97.6 0.00019 6.4E-09 77.2 9.5 24 202-225 2-26 (363)
315 1zd9_A ADP-ribosylation factor 97.5 6.9E-05 2.4E-09 71.3 5.5 56 399-461 23-78 (188)
316 3cpj_B GTP-binding protein YPT 97.5 6.2E-05 2.1E-09 73.9 5.2 58 399-462 14-74 (223)
317 3def_A T7I23.11 protein; chlor 97.5 0.00011 3.8E-09 74.6 7.3 52 289-347 115-166 (262)
318 2qag_A Septin-2, protein NEDD5 97.5 3.4E-05 1.2E-09 82.7 3.6 83 291-394 146-234 (361)
319 2atv_A RERG, RAS-like estrogen 97.5 0.00014 4.9E-09 69.4 7.6 58 398-462 28-88 (196)
320 1h65_A Chloroplast outer envel 97.5 0.00011 3.8E-09 74.9 7.1 53 289-348 118-170 (270)
321 2j1l_A RHO-related GTP-binding 97.5 9.3E-05 3.2E-09 72.2 6.2 57 398-461 34-93 (214)
322 3l0i_B RAS-related protein RAB 97.5 1.8E-05 6E-10 76.2 0.8 57 399-461 34-93 (199)
323 2qm8_A GTPase/ATPase; G protei 97.5 4.7E-05 1.6E-09 80.9 4.1 87 289-395 167-259 (337)
324 2atx_A Small GTP binding prote 97.5 8.5E-05 2.9E-09 70.7 5.4 57 399-462 19-78 (194)
325 2h57_A ADP-ribosylation factor 97.5 6.8E-05 2.3E-09 71.2 4.7 59 398-462 21-79 (190)
326 2hup_A RAS-related protein RAB 97.5 8.6E-05 2.9E-09 71.8 5.3 57 399-461 30-89 (201)
327 2gf0_A GTP-binding protein DI- 97.5 6.9E-05 2.4E-09 71.2 4.6 60 398-461 8-67 (199)
328 2www_A Methylmalonic aciduria 97.5 2.7E-05 9.3E-10 83.1 1.6 23 398-420 74-96 (349)
329 3j2k_7 ERF3, eukaryotic polype 97.5 9.3E-05 3.2E-09 81.3 5.7 63 399-461 18-106 (439)
330 2j0v_A RAC-like GTP-binding pr 97.4 0.00011 3.6E-09 71.1 5.5 57 399-462 10-69 (212)
331 3bwd_D RAC-like GTP-binding pr 97.4 5E-05 1.7E-09 71.0 2.8 58 398-462 8-68 (182)
332 3dz8_A RAS-related protein RAB 97.4 3.8E-05 1.3E-09 73.2 1.9 58 399-460 24-82 (191)
333 2f7s_A C25KG, RAS-related prot 97.4 8.6E-05 2.9E-09 72.0 4.4 24 399-422 26-49 (217)
334 2b6h_A ADP-ribosylation factor 97.4 0.00013 4.4E-09 70.0 5.5 57 398-462 29-85 (192)
335 3p26_A Elongation factor 1 alp 97.4 7.1E-05 2.4E-09 83.1 4.2 74 387-461 23-122 (483)
336 2zej_A Dardarin, leucine-rich 97.4 0.00014 4.8E-09 69.0 5.5 59 399-461 3-67 (184)
337 3j25_A Tetracycline resistance 97.4 0.00037 1.3E-08 80.2 9.9 60 270-348 75-135 (638)
338 2yc2_C IFT27, small RAB-relate 97.4 6.2E-05 2.1E-09 71.9 3.0 58 399-461 21-84 (208)
339 1m7b_A RND3/RHOE small GTP-bin 97.4 0.00021 7.2E-09 67.5 6.6 24 399-422 8-31 (184)
340 3t34_A Dynamin-related protein 97.4 0.00018 6.1E-09 76.6 6.8 24 400-423 36-59 (360)
341 2cjw_A GTP-binding protein GEM 97.4 0.0001 3.6E-09 70.8 4.5 59 399-462 7-68 (192)
342 2iwr_A Centaurin gamma 1; ANK 97.4 0.00016 5.4E-09 67.5 5.3 56 399-462 8-66 (178)
343 2gco_A H9, RHO-related GTP-bin 97.4 0.00014 4.9E-09 69.9 5.1 56 399-461 26-84 (201)
344 1nrj_B SR-beta, signal recogni 97.3 0.0001 3.4E-09 71.6 3.9 55 398-461 12-66 (218)
345 3izq_1 HBS1P, elongation facto 97.3 7E-05 2.4E-09 85.8 2.6 65 397-461 166-256 (611)
346 2qm8_A GTPase/ATPase; G protei 97.3 4.8E-05 1.6E-09 80.8 1.1 35 386-420 43-77 (337)
347 3q3j_B RHO-related GTP-binding 97.3 0.00028 9.7E-09 68.9 6.5 57 398-461 27-86 (214)
348 3ihw_A Centg3; RAS, centaurin, 97.3 0.00034 1.2E-08 66.6 6.6 24 399-422 21-44 (184)
349 1gwn_A RHO-related GTP-binding 97.3 0.00033 1.1E-08 68.2 6.6 57 398-461 28-87 (205)
350 1tq4_A IIGP1, interferon-induc 97.3 0.00021 7.2E-09 78.1 5.7 76 386-462 57-132 (413)
351 2g3y_A GTP-binding protein GEM 97.3 0.00021 7.2E-09 70.6 5.1 58 399-461 38-98 (211)
352 2f9l_A RAB11B, member RAS onco 97.2 0.00036 1.2E-08 67.0 6.5 24 399-422 6-29 (199)
353 2qnr_A Septin-2, protein NEDD5 97.2 0.00036 1.2E-08 72.7 6.6 69 332-406 155-223 (301)
354 4fn5_A EF-G 1, elongation fact 97.2 0.0031 1.1E-07 73.4 14.9 58 270-346 93-151 (709)
355 2dby_A GTP-binding protein; GD 97.2 0.00079 2.7E-08 72.4 9.2 51 333-389 202-254 (368)
356 3mca_A HBS1, elongation factor 97.2 6.9E-05 2.4E-09 85.5 0.9 63 399-461 178-266 (592)
357 1udx_A The GTP-binding protein 97.2 0.00031 1.1E-08 76.8 5.9 59 399-463 158-218 (416)
358 3llu_A RAS-related GTP-binding 97.2 0.00042 1.4E-08 66.3 6.2 60 398-462 20-81 (196)
359 1oix_A RAS-related protein RAB 97.2 0.00057 1.9E-08 65.4 6.9 58 399-462 30-90 (191)
360 3lvq_E ARF-GAP with SH3 domain 97.2 0.00022 7.5E-09 79.0 4.5 56 398-461 322-377 (497)
361 1tq4_A IIGP1, interferon-induc 97.1 0.0011 3.8E-08 72.4 9.5 111 288-414 146-271 (413)
362 3th5_A RAS-related C3 botulinu 96.2 7.5E-05 2.6E-09 71.9 0.0 58 398-462 30-90 (204)
363 2qag_A Septin-2, protein NEDD5 97.1 0.00035 1.2E-08 74.8 4.8 64 399-462 38-107 (361)
364 3izy_P Translation initiation 97.0 9.3E-05 3.2E-09 83.5 0.1 58 398-461 4-63 (537)
365 3q5d_A Atlastin-1; G protein, 97.0 0.00025 8.4E-09 78.3 3.2 22 400-421 69-90 (447)
366 2elf_A Protein translation elo 97.0 0.00027 9.4E-09 76.0 3.4 49 400-462 23-72 (370)
367 1n0u_A EF-2, elongation factor 97.0 0.00023 8E-09 84.4 3.0 85 287-384 118-220 (842)
368 1wb1_A Translation elongation 97.0 0.00025 8.6E-09 78.9 3.0 62 399-460 20-83 (482)
369 3tr5_A RF-3, peptide chain rel 97.0 0.00022 7.5E-09 80.3 2.2 65 399-463 14-95 (528)
370 3o47_A ADP-ribosylation factor 97.0 0.00063 2.1E-08 71.7 5.5 55 398-460 165-219 (329)
371 2j37_W Signal recognition part 96.9 0.0011 3.6E-08 74.3 7.5 82 290-394 213-310 (504)
372 2qag_B Septin-6, protein NEDD5 96.9 0.0012 4.1E-08 72.4 7.4 74 388-463 30-108 (427)
373 1d2e_A Elongation factor TU (E 96.9 0.00046 1.6E-08 74.6 3.7 63 399-461 4-77 (397)
374 3dpu_A RAB family protein; roc 96.9 0.0005 1.7E-08 77.1 4.1 41 382-422 14-65 (535)
375 3t1o_A Gliding protein MGLA; G 96.9 0.00071 2.4E-08 63.6 4.6 24 399-422 15-38 (198)
376 2c78_A Elongation factor TU-A; 96.9 0.00028 9.6E-09 76.4 2.0 64 399-462 12-87 (405)
377 1f60_A Elongation factor EEF1A 96.8 0.00025 8.6E-09 78.3 1.2 23 399-421 8-30 (458)
378 2xex_A Elongation factor G; GT 96.8 0.00045 1.5E-08 80.2 3.3 65 399-463 11-88 (693)
379 3p32_A Probable GTPase RV1496/ 96.8 0.00086 2.9E-08 71.4 4.8 36 386-421 67-102 (355)
380 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00089 3E-08 71.9 4.9 105 287-394 221-350 (362)
381 4dkx_A RAS-related protein RAB 96.7 0.0011 3.8E-08 65.7 5.0 58 399-462 14-74 (216)
382 1zun_B Sulfate adenylate trans 96.7 0.001 3.5E-08 72.7 5.0 24 399-422 25-48 (434)
383 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.0013 4.5E-08 71.3 5.6 28 201-228 19-47 (392)
384 1jny_A EF-1-alpha, elongation 96.7 0.00054 1.9E-08 75.0 2.4 64 399-462 7-96 (435)
385 2p67_A LAO/AO transport system 96.7 0.0013 4.4E-08 69.7 5.1 36 385-420 43-78 (341)
386 1kk1_A EIF2gamma; initiation o 96.7 0.001 3.5E-08 72.1 4.4 40 399-441 11-50 (410)
387 1zo1_I IF2, translation initia 96.6 0.00041 1.4E-08 77.6 1.2 59 398-462 4-63 (501)
388 1r5b_A Eukaryotic peptide chai 96.6 0.00061 2.1E-08 75.4 2.2 63 399-461 44-132 (467)
389 1s0u_A EIF-2-gamma, translatio 96.6 0.0017 5.8E-08 70.3 5.4 41 398-441 8-48 (408)
390 1cip_A Protein (guanine nucleo 96.6 0.0011 3.7E-08 70.9 3.8 105 287-394 213-341 (353)
391 2h5e_A Peptide chain release f 96.5 0.0012 4E-08 74.4 4.0 65 399-463 14-95 (529)
392 3sop_A Neuronal-specific septi 96.5 0.001 3.5E-08 68.4 3.2 64 400-463 4-73 (270)
393 2qag_C Septin-7; cell cycle, c 96.4 0.0024 8.3E-08 69.8 5.6 25 399-423 32-56 (418)
394 1dar_A EF-G, elongation factor 96.4 0.0017 5.8E-08 75.3 4.4 64 399-462 13-89 (691)
395 3h2y_A GTPase family protein; 96.2 4E-05 1.4E-09 82.4 -10.2 24 107-130 5-28 (368)
396 1ko7_A HPR kinase/phosphatase; 96.2 0.0033 1.1E-07 66.2 4.5 75 333-421 81-167 (314)
397 3sjy_A Translation initiation 96.1 0.0045 1.5E-07 66.9 5.4 24 398-421 8-31 (403)
398 2qnr_A Septin-2, protein NEDD5 96.0 0.0038 1.3E-07 65.0 4.0 23 399-421 19-41 (301)
399 2qag_B Septin-6, protein NEDD5 95.9 0.0027 9.2E-08 69.6 2.7 68 293-379 151-218 (427)
400 1n0u_A EF-2, elongation factor 95.9 0.0032 1.1E-07 74.6 3.4 24 399-422 20-43 (842)
401 2rdo_7 EF-G, elongation factor 95.9 0.0072 2.5E-07 70.3 6.2 64 399-462 11-94 (704)
402 2wsm_A Hydrogenase expression/ 95.8 0.00087 3E-08 65.2 -1.6 23 399-421 31-53 (221)
403 3cb4_D GTP-binding protein LEP 95.8 0.0036 1.2E-07 71.5 3.0 64 399-462 5-83 (599)
404 3avx_A Elongation factor TS, e 95.7 0.0043 1.5E-07 75.4 3.4 63 399-461 297-370 (1289)
405 1g7s_A Translation initiation 95.7 0.0026 8.8E-08 72.6 1.4 24 399-422 6-29 (594)
406 3ec1_A YQEH GTPase; atnos1, at 95.7 0.00082 2.8E-08 72.1 -2.6 24 107-130 5-28 (369)
407 2ywe_A GTP-binding protein LEP 95.7 0.0037 1.3E-07 71.4 2.5 23 399-421 7-29 (600)
408 2hf9_A Probable hydrogenase ni 95.2 0.005 1.7E-07 59.9 1.4 56 333-394 165-221 (226)
409 3l82_B F-box only protein 4; T 95.2 0.029 1E-06 56.1 6.8 99 288-396 123-222 (227)
410 3ohm_A Guanine nucleotide-bind 95.1 0.024 8.2E-07 60.0 6.4 105 287-394 187-315 (327)
411 2j37_W Signal recognition part 95.0 0.016 5.4E-07 64.8 4.6 21 399-419 102-122 (504)
412 2xtz_A Guanine nucleotide-bind 94.9 0.013 4.6E-07 62.5 3.5 104 287-393 203-341 (354)
413 3c8u_A Fructokinase; YP_612366 94.8 0.012 4.1E-07 57.2 2.7 26 396-421 20-45 (208)
414 1azs_C GS-alpha; complex (lyas 94.7 0.0094 3.2E-07 64.8 1.9 105 287-394 237-382 (402)
415 3ney_A 55 kDa erythrocyte memb 94.7 0.014 4.9E-07 57.3 2.8 40 398-441 19-58 (197)
416 4fid_A G protein alpha subunit 94.4 0.03 1E-06 59.5 4.9 103 287-393 181-324 (340)
417 3r7w_B Gtpase2, GTP-binding pr 94.4 0.024 8.4E-07 60.0 4.1 56 400-462 1-58 (331)
418 1znw_A Guanylate kinase, GMP k 94.4 0.017 5.9E-07 56.0 2.8 27 396-422 18-44 (207)
419 3r7w_B Gtpase2, GTP-binding pr 94.4 0.07 2.4E-06 56.5 7.6 99 288-395 70-172 (331)
420 3dm5_A SRP54, signal recogniti 94.3 0.43 1.5E-05 52.4 14.0 72 289-388 211-282 (443)
421 2dy1_A Elongation factor G; tr 94.3 0.028 9.6E-07 64.8 4.6 24 398-421 9-32 (665)
422 2ohf_A Protein OLA1, GTP-bindi 94.2 0.015 5.1E-07 63.1 2.0 34 201-235 21-55 (396)
423 1yrb_A ATP(GTP)binding protein 94.1 0.01 3.5E-07 59.1 0.5 21 399-419 15-35 (262)
424 1lvg_A Guanylate kinase, GMP k 94.0 0.022 7.5E-07 55.2 2.6 24 398-421 4-27 (198)
425 2hf9_A Probable hydrogenase ni 93.8 0.012 4.1E-07 57.2 0.3 23 399-421 39-61 (226)
426 2v3c_C SRP54, signal recogniti 93.7 0.012 4.1E-07 64.5 0.1 23 399-421 100-122 (432)
427 1kgd_A CASK, peripheral plasma 93.5 0.032 1.1E-06 52.9 2.8 24 399-422 6-29 (180)
428 3l2o_B F-box only protein 4; s 93.5 0.13 4.4E-06 53.8 7.3 96 288-396 208-307 (312)
429 3szr_A Interferon-induced GTP- 93.2 0.054 1.8E-06 61.8 4.4 23 400-422 47-69 (608)
430 2qag_C Septin-7; cell cycle, c 93.1 0.057 2E-06 58.9 4.3 60 332-396 167-226 (418)
431 2eyu_A Twitching motility prot 93.1 0.047 1.6E-06 55.6 3.3 34 386-421 15-48 (261)
432 1s96_A Guanylate kinase, GMP k 93.1 0.04 1.4E-06 54.6 2.7 29 394-422 12-40 (219)
433 1z6g_A Guanylate kinase; struc 92.9 0.047 1.6E-06 53.7 2.9 25 397-421 22-46 (218)
434 1zp6_A Hypothetical protein AT 92.7 0.051 1.7E-06 51.3 2.8 25 397-421 8-32 (191)
435 3c5h_A Glucocorticoid receptor 92.6 0.049 1.7E-06 54.8 2.6 23 399-421 20-51 (255)
436 4a74_A DNA repair and recombin 92.5 0.047 1.6E-06 52.8 2.3 40 382-421 9-48 (231)
437 2v9p_A Replication protein E1; 92.4 0.085 2.9E-06 55.2 4.3 37 386-422 114-150 (305)
438 3tr0_A Guanylate kinase, GMP k 92.4 0.06 2.1E-06 51.3 2.9 24 398-421 7-30 (205)
439 1ex7_A Guanylate kinase; subst 92.3 0.056 1.9E-06 52.5 2.5 23 400-422 3-25 (186)
440 1ye8_A Protein THEP1, hypothet 92.3 0.057 1.9E-06 51.7 2.5 23 400-422 2-24 (178)
441 4ido_A Atlastin-1; GTPase, GTP 92.2 0.14 4.8E-06 56.5 5.7 20 400-419 69-88 (457)
442 3tif_A Uncharacterized ABC tra 92.2 0.083 2.8E-06 52.8 3.7 27 396-422 29-55 (235)
443 2v3c_C SRP54, signal recogniti 92.0 0.11 3.8E-06 56.9 4.7 87 288-396 208-310 (432)
444 2gza_A Type IV secretion syste 91.8 0.081 2.8E-06 56.3 3.3 34 389-422 166-199 (361)
445 2ehv_A Hypothetical protein PH 91.6 0.049 1.7E-06 53.4 1.2 26 394-419 26-51 (251)
446 2cbz_A Multidrug resistance-as 91.6 0.11 3.6E-06 52.1 3.6 27 396-422 29-55 (237)
447 3a00_A Guanylate kinase, GMP k 91.5 0.082 2.8E-06 50.2 2.7 23 400-422 3-25 (186)
448 2qor_A Guanylate kinase; phosp 91.5 0.091 3.1E-06 50.6 3.0 26 397-422 11-36 (204)
449 2pcj_A ABC transporter, lipopr 91.5 0.091 3.1E-06 52.1 3.1 26 397-422 29-54 (224)
450 3jvv_A Twitching mobility prot 91.4 0.11 3.7E-06 55.5 3.7 25 397-421 122-146 (356)
451 1b0u_A Histidine permease; ABC 91.3 0.12 3.9E-06 52.7 3.7 27 396-422 30-56 (262)
452 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.094 3.2E-06 55.2 3.1 36 387-422 160-195 (330)
453 2j41_A Guanylate kinase; GMP, 91.2 0.098 3.3E-06 49.8 2.9 25 397-421 5-29 (207)
454 1mv5_A LMRA, multidrug resista 91.2 0.095 3.2E-06 52.6 2.9 27 396-422 26-52 (243)
455 3tau_A Guanylate kinase, GMP k 91.1 0.1 3.5E-06 50.6 3.0 26 397-422 7-32 (208)
456 1rz3_A Hypothetical protein rb 91.0 0.14 4.7E-06 49.4 3.8 37 385-421 8-45 (201)
457 2ff7_A Alpha-hemolysin translo 91.0 0.11 3.8E-06 52.4 3.2 27 396-422 33-59 (247)
458 2olj_A Amino acid ABC transpor 91.0 0.13 4.5E-06 52.5 3.7 27 396-422 48-74 (263)
459 1g6h_A High-affinity branched- 90.9 0.11 3.9E-06 52.5 3.2 26 397-422 32-57 (257)
460 1vpl_A ABC transporter, ATP-bi 90.9 0.13 4.5E-06 52.2 3.7 27 396-422 39-65 (256)
461 2pze_A Cystic fibrosis transme 90.9 0.12 4E-06 51.5 3.2 26 397-422 33-58 (229)
462 1sgw_A Putative ABC transporte 90.9 0.12 4.2E-06 51.1 3.2 27 396-422 33-59 (214)
463 2ghi_A Transport protein; mult 90.8 0.11 3.9E-06 52.7 3.1 27 396-422 44-70 (260)
464 3ec2_A DNA replication protein 90.8 0.11 3.9E-06 48.7 2.9 24 398-421 38-61 (180)
465 2ixe_A Antigen peptide transpo 90.8 0.14 4.7E-06 52.4 3.7 27 396-422 43-69 (271)
466 3n70_A Transport activator; si 90.6 0.22 7.5E-06 45.4 4.6 38 384-421 10-47 (145)
467 3gfo_A Cobalt import ATP-bindi 90.6 0.13 4.3E-06 53.0 3.2 26 397-422 33-58 (275)
468 1ji0_A ABC transporter; ATP bi 90.6 0.13 4.4E-06 51.6 3.2 26 397-422 31-56 (240)
469 3co5_A Putative two-component 90.6 0.2 6.9E-06 45.6 4.2 38 384-421 13-50 (143)
470 2zu0_C Probable ATP-dependent 90.6 0.12 4.2E-06 52.6 3.1 26 396-421 44-69 (267)
471 3vqt_A RF-3, peptide chain rel 90.5 0.11 3.6E-06 58.7 2.7 24 399-422 32-55 (548)
472 4gp7_A Metallophosphoesterase; 90.5 0.1 3.5E-06 49.1 2.2 23 398-420 9-31 (171)
473 2yz2_A Putative ABC transporte 90.4 0.16 5.3E-06 51.8 3.7 27 396-422 31-57 (266)
474 4g1u_C Hemin import ATP-bindin 90.4 0.11 3.8E-06 53.0 2.6 26 397-422 36-61 (266)
475 3nh6_A ATP-binding cassette SU 90.4 0.11 3.8E-06 54.3 2.6 28 395-422 77-104 (306)
476 3sop_A Neuronal-specific septi 90.3 0.6 2E-05 47.6 7.9 49 288-349 109-157 (270)
477 2kjq_A DNAA-related protein; s 90.3 0.11 3.7E-06 48.2 2.1 34 386-421 26-59 (149)
478 2d2e_A SUFC protein; ABC-ATPas 90.3 0.12 4E-06 52.2 2.6 25 397-421 28-52 (250)
479 3b85_A Phosphate starvation-in 90.2 0.17 5.8E-06 49.7 3.6 24 398-421 22-45 (208)
480 1jbk_A CLPB protein; beta barr 90.2 0.21 7.2E-06 45.8 4.0 23 399-421 44-66 (195)
481 2qi9_C Vitamin B12 import ATP- 90.2 0.12 4.2E-06 52.2 2.6 26 397-422 25-50 (249)
482 2w0m_A SSO2452; RECA, SSPF, un 90.1 0.11 3.8E-06 50.0 2.1 40 382-421 7-46 (235)
483 2cvh_A DNA repair and recombin 90.1 0.16 5.4E-06 48.7 3.3 39 382-420 4-42 (220)
484 2ihy_A ABC transporter, ATP-bi 90.1 0.16 5.4E-06 52.3 3.4 26 397-422 46-71 (279)
485 3asz_A Uridine kinase; cytidin 90.0 0.13 4.4E-06 49.4 2.5 24 398-421 6-29 (211)
486 3j25_A Tetracycline resistance 90.0 0.094 3.2E-06 60.2 1.8 66 399-464 3-81 (638)
487 1kag_A SKI, shikimate kinase I 90.0 0.14 4.8E-06 47.4 2.7 23 399-421 5-27 (173)
488 4eun_A Thermoresistant glucoki 90.0 0.14 4.8E-06 49.1 2.7 24 398-421 29-52 (200)
489 1odf_A YGR205W, hypothetical 3 89.9 0.21 7.1E-06 51.7 4.1 37 385-421 14-54 (290)
490 2nq2_C Hypothetical ABC transp 89.8 0.16 5.5E-06 51.4 3.2 26 397-422 30-55 (253)
491 2oap_1 GSPE-2, type II secreti 89.8 0.18 6.1E-06 56.4 3.8 34 388-421 250-283 (511)
492 2bdt_A BH3686; alpha-beta prot 89.8 0.13 4.6E-06 48.5 2.4 21 400-420 4-24 (189)
493 1np6_A Molybdopterin-guanine d 89.8 0.13 4.6E-06 49.1 2.4 22 400-421 8-29 (174)
494 1n0w_A DNA repair protein RAD5 89.6 0.16 5.4E-06 49.5 2.8 40 382-421 8-47 (243)
495 2bbw_A Adenylate kinase 4, AK4 89.5 0.17 5.7E-06 50.2 3.0 22 399-420 28-49 (246)
496 1htw_A HI0065; nucleotide-bind 89.5 0.22 7.6E-06 46.8 3.6 27 396-422 31-57 (158)
497 2bbs_A Cystic fibrosis transme 89.5 0.22 7.5E-06 51.5 3.9 27 396-422 62-88 (290)
498 2i3b_A HCR-ntpase, human cance 89.4 0.16 5.6E-06 49.1 2.7 23 400-422 3-25 (189)
499 3uie_A Adenylyl-sulfate kinase 89.4 0.23 7.7E-06 47.7 3.7 26 396-421 23-48 (200)
500 2ewv_A Twitching motility prot 89.4 0.15 5E-06 54.6 2.6 26 396-421 134-159 (372)
No 1
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=100.00 E-value=9.8e-59 Score=501.56 Aligned_cols=334 Identities=32% Similarity=0.560 Sum_probs=263.3
Q ss_pred ceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005977 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~ 324 (666)
..+|||||+++||+++... .++...|.+.+... ...+++|++|+|+++|.+++...+.+. +
T Consensus 36 ~~~C~RC~~l~hy~~~~~v----~~~~e~f~~~L~~~------~~~~~lil~VvD~~d~~~s~~~~l~~~----l----- 96 (369)
T 3ec1_A 36 EVICQRCFRLKHYNEVQDV----PLDDDDFLSMLHRI------GESKALVVNIVDIFDFNGSFIPGLPRF----A----- 96 (369)
T ss_dssp ---------------------------CHHHHHHHHH------HHHCCEEEEEEETTCSGGGCCSSHHHH----C-----
T ss_pred CEEchhHHHhhccccccCC----cCCHHHHHHHHHHh------hccCcEEEEEEECCCCCCchhhHHHHH----h-----
Confidence 5799999999999998653 35667777776653 345889999999999987765432221 1
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEE
Q 005977 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vv 404 (666)
..+|+++|+||+||+++......+..|++.+++..|+. ..+++++||++|+|+++|++.|.++... .+++++
T Consensus 97 ------~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~-~~~v~~iSA~~g~gi~~L~~~I~~~~~~-~~i~~v 168 (369)
T 3ec1_A 97 ------ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC-PVDVCLVSAAKGIGMAKVMEAINRYREG-GDVYVV 168 (369)
T ss_dssp ------TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC-CSEEEECBTTTTBTHHHHHHHHHHHHTT-SCEEEE
T ss_pred ------CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC-cccEEEEECCCCCCHHHHHHHHHhhccc-CcEEEE
Confidence 24589999999999988766677889998887887753 3579999999999999999999887654 589999
Q ss_pred ccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhhc
Q 005977 405 GAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKEL 484 (666)
Q Consensus 405 G~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~kel 484 (666)
|.+|||||||||+|++........++++..||||++...+. ++.++.++||||+..+......+..+++..+.+.+++
T Consensus 169 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i 246 (369)
T 3ec1_A 169 GCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQMAHFVDARDLKIITPKREI 246 (369)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCC
T ss_pred cCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccccc
Confidence 99999999999999987333233456689999999987765 6678999999999998877777887888888888999
Q ss_pred cceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccCCCCCcccccccCCccc
Q 005977 485 QPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWKD 564 (666)
Q Consensus 485 ~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~PP~~~~~~~~l~~~~~ 564 (666)
++..|.++++|++++||+.|+|++.+... .+++|.++...+|.+++++|+++|++|+|..|+||++.+ ++.+++|++
T Consensus 247 ~~~~~~l~~~~~~~~g~l~~l~~l~~~~~--~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~-~~~~~~l~~ 323 (369)
T 3ec1_A 247 HPRVYQLNEGQTLFFGGLARLDYIKGGRR--SFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRY-AAEFPPLVP 323 (369)
T ss_dssp CCEEEEECTTEEEEETTTEEEEEEESSSE--EEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGG-TTTCCCEEE
T ss_pred CceEEEEcCCceEEECCEEEEEEccCCCc--eEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchh-hhhccCcEE
Confidence 99999999999999999999999987643 478899999999999999999999999999999999864 678999999
Q ss_pred eEEEEcccCCCCcccceEEcccceEEEeccCceEEEEEecCCeeEEEeCCCC
Q 005977 565 RKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 565 ~~~~i~~~~~~~~~~DIvIsGLGWisv~~~G~~~i~v~~P~Gv~v~~R~pli 616 (666)
++|.+.+ ...||+|+|||||+|++ +++++++|+|+||+|++|+||+
T Consensus 324 ~~~~~~~-----~~~di~i~glgwi~v~~-~~~~~~~~~p~~v~v~~R~~li 369 (369)
T 3ec1_A 324 RSLSVKE-----RKTDIVFSGLGWVTCND-PGAQLVVHAPKGVDVFIRQSLI 369 (369)
T ss_dssp EEEECCS-----SSEEEEETTTEEEEESS-SCCEEEEEEETTSCEEEEECCC
T ss_pred EEEEeCC-----CceeEEEccCceEEeeC-CceEEEEEeCCCceEEeecCCC
Confidence 9999865 35899999999999984 4689999999999999999986
No 2
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=100.00 E-value=1.6e-57 Score=491.95 Aligned_cols=334 Identities=30% Similarity=0.548 Sum_probs=256.2
Q ss_pred ceeecceecceecceecccccccccCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhh
Q 005977 245 VTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKD 324 (666)
Q Consensus 245 ~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~ 324 (666)
..+|||||+++||+++... .++...|.+.+... ...+++|++|+|++++.+++.. .|.+..
T Consensus 34 ~~~C~Rc~~l~hy~~~~~v----~~~~e~f~~~l~~i------~~~~~~il~VvD~~d~~~~~~~--------~l~~~~- 94 (368)
T 3h2y_A 34 QVICQRCFRLKHYNEIQDV----SLTDDDFLRILNGI------GKSDALVVKIVDIFDFNGSWLP--------GLHRFV- 94 (368)
T ss_dssp --------------------------CHHHHHHHHHH------HHSCCEEEEEEETTSHHHHCCT--------THHHHS-
T ss_pred CcEEhhhhhhhccCccccC----CCCHHHHHHHHHHH------hccCcEEEEEEECCCCcccHHH--------HHHHHh-
Confidence 5799999999999998653 34566777766543 3457899999999986544332 222221
Q ss_pred hhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEE
Q 005977 325 DAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVI 404 (666)
Q Consensus 325 ~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vv 404 (666)
.++|+++|+||+||+++......+..|++++++..|++ ...++++||++|+|+++|++.|.++... .+++++
T Consensus 95 ------~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~-~~~v~~iSA~~g~gi~~L~~~l~~~~~~-~~i~~v 166 (368)
T 3h2y_A 95 ------GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK-PEDVFLISAAKGQGIAELADAIEYYRGG-KDVYVV 166 (368)
T ss_dssp ------SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC-CSEEEECCTTTCTTHHHHHHHHHHHHTT-SCEEEE
T ss_pred ------CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC-cccEEEEeCCCCcCHHHHHhhhhhhccc-ceEEEe
Confidence 24689999999999987766677889988887777752 3469999999999999999999887653 589999
Q ss_pred ccCCCChhHHHHhhhccccce-eecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcccccccChhhHHHHHhhhh
Q 005977 405 GAQNAGKSTLINTFAKKEGVK-VSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLMSMRLNRDEQKMVEIRKE 483 (666)
Q Consensus 405 G~~NvGKSTLIN~L~~~~~~~-~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~~~~L~~~e~~~~~~~ke 483 (666)
|.+|||||||||+|++..... ...++++..||||++...+. ++.++.++||||+..+..+...+..+++....+.++
T Consensus 167 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 244 (368)
T 3h2y_A 167 GCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKE 244 (368)
T ss_dssp EBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSC
T ss_pred cCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccc
Confidence 999999999999999874332 12345689999999987765 566799999999999988777788888888888999
Q ss_pred ccceeeEecCCCeeeecceEEEEeccCCcceEEEEEecCCcccccccccccHHHHHHHhcCCccCCCCCcccccccCCcc
Q 005977 484 LQPRTYRVKGGQAVHVGGLMRLDLDQASVETIYVTVWASPNVSLHLGKIENADEIWKNHVGIRLQPPIGQDRASELGTWK 563 (666)
Q Consensus 484 l~p~t~~lk~gqsl~lgGL~rlD~l~~~~~~~~~~~~~s~~v~~H~tk~e~Ade~~~k~~G~~L~PP~~~~~~~~l~~~~ 563 (666)
+++..|.+++++++++||+.++|++.+... .+++++++...+|.+++++|+++|++|+|..|+||.+. +...+++|+
T Consensus 245 i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~--~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~-~~~~~~~l~ 321 (368)
T 3h2y_A 245 IKPMVFQLNEEQTLFFSGLARFDYVSGGRR--AFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPE-ELENMPELV 321 (368)
T ss_dssp CCCEEEEECTTEEEEETTTEEEEEEESSSE--EEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCHH-HHHTSCCEE
T ss_pred cCceEEEEcCCCEEEEcceEEEEEecCCCc--eEEEEecCccccccccHHHHHHHHHHHhCCccCCCchh-hHhhccCcE
Confidence 999999999999999999999999987643 47889999999999999999999999999999999875 367889999
Q ss_pred ceEEEEcccCCCCcccceEEcccceEEEeccCceEEEEEecCCeeEEEeCCCC
Q 005977 564 DRKLKVSGTSWDVNGIDIAAAGLGWFSLGLKGEASLTLWTYDGIEITLREPLV 616 (666)
Q Consensus 564 ~~~~~i~~~~~~~~~~DIvIsGLGWisv~~~G~~~i~v~~P~Gv~v~~R~pli 616 (666)
.++|.+.+. ..||+|+|||||+|++. ++.+++|+|+||+|++|+||+
T Consensus 322 ~~~~~~~~~-----~~di~i~glgwi~v~~~-~~~~~~~~p~~v~v~~r~~~~ 368 (368)
T 3h2y_A 322 KYEFNIREP-----KTDVVFSGLGWVTVNEP-GAKIVAHVPKGVSVSLRKSLI 368 (368)
T ss_dssp EEEEECCSS-----SEEEEETTTEEEEECSS-CCEEEEEEETTCCEEEEECCC
T ss_pred EEEEEecCC-----cceEEEcccceEEEecC-ceEEEEEecCCcEEEeecCcC
Confidence 999998752 48999999999999844 689999999999999999986
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=4.6e-25 Score=242.77 Aligned_cols=216 Identities=21% Similarity=0.198 Sum_probs=133.4
Q ss_pred ceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch-----
Q 005977 203 FTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d----- 273 (666)
+..++||+||||||+ +|++.+.+.+++...+.. ++.++|+.+.....++.+ |+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~----------------T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 67 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGV----------------TRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 67 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CEEEECTTCSSCCEEEC---------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCC----------------ccceEEEEEEECCceEEEEECCCCCCcchh
Confidence 345789999999655 599999987766655544 667777766554444333 5542
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+..++.. ++.++|+|++|+|+++.. . ..+..+...|++ .++|++||+||+|+......
T Consensus 68 ~~~~~~~~~~~--~~~~ad~il~vvD~~~~~--~--~~d~~~~~~l~~---------~~~pvilv~NK~D~~~~~~~--- 129 (436)
T 2hjg_A 68 FLAQIRQQAEI--AMDEADVIIFMVNGREGV--T--AADEEVAKILYR---------TKKPVVLAVNKLDNTEMRAN--- 129 (436)
T ss_dssp HHHHHHHHHHH--HHHHCSEEEEEEETTTCS--C--HHHHHHHHHHTT---------CCSCEEEEEECCCC-----C---
T ss_pred HHHHHHHHHHH--HHHhCCEEEEEEeCCCCC--C--HHHHHHHHHHHH---------cCCCEEEEEECccCccchhh---
Confidence 33455555444 678899999999998843 2 234455555543 45689999999999754221
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC---------CccEEEEccCCCChhHHHHhhhccccc
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP---------RGNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~---------~~~v~vvG~~NvGKSTLIN~L~~~~~~ 424 (666)
+..+ ..+| +..++++||++|.|+++|++.|.+.+++ ..+++++|.+|||||||+|+|++....
T Consensus 130 ~~~~-----~~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 130 IYDF-----YSLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp CCSS-----GGGS---SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred HHHH-----HHcC---CCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 1111 1334 3458999999999999999999877652 257999999999999999999986543
Q ss_pred eeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 425 KVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 425 ~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
. ++..||||++.+......+ ..+.|+||||+.....
T Consensus 202 ~-----~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 202 I-----VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 238 (436)
T ss_dssp E-----EC---------CCEEEEETTEEEEETTHHHHTCBTT
T ss_pred e-----ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcc
Confidence 3 3688999999764433333 3688999999976554
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3e-24 Score=236.44 Aligned_cols=214 Identities=23% Similarity=0.180 Sum_probs=129.9
Q ss_pred eeeccCCCchHH-HHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch------H
Q 005977 205 PAGVGYGNITEE-LVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD------F 274 (666)
Q Consensus 205 ~a~vGrpNvg~t-lLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d------f 274 (666)
.++||+|||||| |+|++.+++.++++..+.. ++.++|+.+.....++.+ |+.. +
T Consensus 4 v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~----------------T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV----------------TRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEECCTTSSHHHHHHHHHC------------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCceecCCCCC----------------ccceeeEEEEECCeEEEEEECCCccccccchH
Confidence 467999999955 5599999987766665544 666666665544333332 5543 3
Q ss_pred HHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 275 DRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 275 ~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
...+.+++.. ++.++|+|++|+|+++.. . ..+..+..+|++ .++|++||+||+|+.... ...+
T Consensus 68 ~~~~~~~~~~--~~~~ad~il~V~D~~~~~--~--~~d~~i~~~l~~---------~~~p~ilv~NK~D~~~~~--~~~~ 130 (439)
T 1mky_A 68 SQKMKEVTLN--MIREADLVLFVVDGKRGI--T--KEDESLADFLRK---------STVDTILVANKAENLREF--EREV 130 (439)
T ss_dssp CHHHHHHHHH--HHTTCSEEEEEEETTTCC--C--HHHHHHHHHHHH---------HTCCEEEEEESCCSHHHH--HHHT
T ss_pred HHHHHHHHHH--HHHhCCEEEEEEECCCCC--C--HHHHHHHHHHHH---------cCCCEEEEEeCCCCcccc--HHHH
Confidence 3445555444 678899999999998742 2 234556666654 246899999999985320 0111
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC-------------CCccEEEEccCCCChhHHHHhhhcc
Q 005977 355 DRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 355 ~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~-------------~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+ ..+ ..+| +..++++||++|.|+++|++.|.+.++ ...+++++|.+|||||||+|+|++.
T Consensus 131 --~-~~~-~~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 131 --K-PEL-YSLG---FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp --H-HHH-GGGS---SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred --H-HHH-HhcC---CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 0 112 2345 445899999999999999998865543 1147899999999999999999987
Q ss_pred ccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005977 422 EGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 422 ~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
.... ++..||||++.......+.+ .+.++||||+...
T Consensus 204 ~~~~-----v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 204 ERAL-----VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241 (439)
T ss_dssp TTEE-----ECCCC------CCEEEEETTEEEEESSCSCC---
T ss_pred cccc-----cCCCCCCcCCceEEEEEECCEEEEEEECCCCccc
Confidence 5433 36899999986543333433 5778999998644
No 5
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=3.6e-23 Score=228.91 Aligned_cols=217 Identities=21% Similarity=0.200 Sum_probs=133.1
Q ss_pred ceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch-----
Q 005977 203 FTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d----- 273 (666)
+..++||+||+|||+ +|++.+.+.+++...+.. ++.+.|+.+......+.+ |++.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~----------------t~~~~~~~~~~~~~~~~liDT~G~~~~~~~ 87 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGV----------------TRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 87 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CEEEECTTCSSCCEEECCCC------C
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc----------------ceeEEEEEEEECCceEEEEECCCCCCcchH
Confidence 466889999999555 599999987766554433 566666665544333332 6633
Q ss_pred HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 274 FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 274 f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+...+.+++.. ++.++|+||+|+|+++.. . ..+..+.+.|++ .++|+++|+||+|+......
T Consensus 88 ~~~~~~~~~~~--~~~~ad~il~VvD~~~~~--~--~~d~~l~~~l~~---------~~~pvilV~NK~D~~~~~~~--- 149 (456)
T 4dcu_A 88 FLAQIRQQAEI--AMDEADVIIFMVNGREGV--T--AADEEVAKILYR---------TKKPVVLAVNKLDNTEMRAN--- 149 (456)
T ss_dssp CHHHHHHHHHH--HHHHCSEEEEEEESSSCS--C--HHHHHHHHHHTT---------CCSCEEEEEECC-----------
T ss_pred HHHHHHHHHHh--hHhhCCEEEEEEeCCCCC--C--hHHHHHHHHHHH---------cCCCEEEEEECccchhhhhh---
Confidence 24445444444 677899999999998732 2 334556666654 45789999999999743210
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC---------CCccEEEEccCCCChhHHHHhhhccccc
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG---------PRGNVWVIGAQNAGKSTLINTFAKKEGV 424 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~---------~~~~v~vvG~~NvGKSTLIN~L~~~~~~ 424 (666)
+..+ ..++ +..++++||++|.|+++|++.+.+.++ ...+++++|.+|||||||+|+|++....
T Consensus 150 ~~e~-----~~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~ 221 (456)
T 4dcu_A 150 IYDF-----YSLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 221 (456)
T ss_dssp -CCS-----GGGS---SSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred HHHH-----HHcC---CCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCcc
Confidence 1111 1334 456899999999999999999987653 2357899999999999999999976543
Q ss_pred eeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCccc
Q 005977 425 KVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 425 ~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~~ 466 (666)
. ++..||||++........+ ..+.|+||||+......
T Consensus 222 ~-----~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~ 259 (456)
T 4dcu_A 222 I-----VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259 (456)
T ss_dssp E-----ECC------CTTSEEEEETTEEEEETTGGGTTTBTTB
T ss_pred c-----cCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCccc
Confidence 3 3688999998643222232 36789999999865543
No 6
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.87 E-value=5.4e-22 Score=206.94 Aligned_cols=163 Identities=23% Similarity=0.265 Sum_probs=110.5
Q ss_pred cCcchHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 269 IPDFDFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 269 iP~~df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
+|++.-. ..+++.+ .+..+|+|++|+|++++.++....+++. + ..+|+++|+||+||++.
T Consensus 6 ~PGhm~k--a~~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l-----------~~kp~ilVlNK~DL~~~- 65 (282)
T 1puj_A 6 FPGHMAK--ARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDI----L-----------KNKPRIMLLNKADKADA- 65 (282)
T ss_dssp ---CTTH--HHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHH----C-----------SSSCEEEEEECGGGSCH-
T ss_pred CchHHHH--HHHHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHHH----H-----------CCCCEEEEEECcccCCH-
Confidence 5665421 2234444 6788999999999999988765433222 1 24689999999999874
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC-------------CCccEEEEccCCCChhHHH
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG-------------PRGNVWVIGAQNAGKSTLI 415 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~-------------~~~~v~vvG~~NvGKSTLI 415 (666)
..++.|+.++ +..|+ .++++||+++.|+++|++.|.+.++ ...+++++|.|||||||||
T Consensus 66 ---~~~~~~~~~~-~~~g~----~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsli 137 (282)
T 1puj_A 66 ---AVTQQWKEHF-ENQGI----RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLI 137 (282)
T ss_dssp ---HHHHHHHHHH-HTTTC----CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHH
T ss_pred ---HHHHHHHHHH-HhcCC----cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHH
Confidence 3367787664 34454 3899999999999999988766532 3357999999999999999
Q ss_pred HhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCccc
Q 005977 416 NTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 416 N~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~~ 466 (666)
|+|++.... .++..||||++...+. ++.++.++||||+..+...
T Consensus 138 N~l~~~~~~-----~~~~~~g~T~~~~~~~--~~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 138 NRLAKKNIA-----KTGDRPGITTSQQWVK--VGKELELLDTPGILWPKFE 181 (282)
T ss_dssp HHHHTSCCC-----------------CCEE--ETTTEEEEECCCCCCSCCC
T ss_pred HHHhcCcee-----ecCCCCCeeeeeEEEE--eCCCEEEEECcCcCCCCCC
Confidence 999987544 3468999999876544 5678999999999987653
No 7
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.80 E-value=1.7e-20 Score=193.65 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=104.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|++++..+....++ + + .+|.++|+||+||++.. .++.|+.++. ..|
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~l~--l---l------------~k~~iivlNK~DL~~~~----~~~~~~~~~~-~~g 75 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYGVD--F---S------------RKETIILLNKVDIADEK----TTKKWVEFFK-KQG 75 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTTSC--C---T------------TSEEEEEEECGGGSCHH----HHHHHHHHHH-HTT
T ss_pred HHhhCCEEEEEeeCCCCCcCcChHHH--h---c------------CCCcEEEEECccCCCHH----HHHHHHHHHH-HcC
Confidence 56789999999999998877643322 1 1 24789999999998743 3677876553 456
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEee
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG 446 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~ 446 (666)
++ + ++||+++.|+++|++.|.+.+ .+++++|.||||||||||+|++..... ++..||+|+....+.
T Consensus 76 ~~----v-~iSa~~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~-----~~~~~g~T~~~~~~~- 141 (262)
T 3cnl_A 76 KR----V-ITTHKGEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASS-----VGAQPGITKGIQWFS- 141 (262)
T ss_dssp CC----E-EECCTTSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC---------------CCSCEEE-
T ss_pred Ce----E-EEECCCCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccc-----cCCCCCCccceEEEE-
Confidence 43 7 999999999999999887643 589999999999999999999765433 357899998875544
Q ss_pred EeCCceEEEECCCCCCCcc
Q 005977 447 ILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 447 ~l~~~~~liDTPGi~~~~~ 465 (666)
++.++.++||||+..+..
T Consensus 142 -~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 142 -LENGVKILDTPGILYKNI 159 (262)
T ss_dssp -CTTSCEEESSCEECCCCC
T ss_pred -eCCCEEEEECCCcccCcC
Confidence 567899999999998875
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.66 E-value=3.4e-17 Score=172.78 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=101.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++|+|+++|..+.. .+++.+.. ... .++|++||+||+||++.......+..|.+.+ +..|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~-~~~---------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-~~~g 150 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVL-VEA---------NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-RNIG 150 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHH-HHT---------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-HHHT
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHH-HHH---------CCCCEEEEEECCccCchhhhHHHHHHHHHHH-HhCC
Confidence 5689999999999998876543 44444322 111 3457899999999997632102356776544 4556
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeeccccc--CCCCceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S--~~PGTT~~~~~~ 444 (666)
++ ++++||.++.|+++|++.+. +..++++|.+|||||||||+|++.....++.++.. ...+||+....+
T Consensus 151 ~~----v~~~sa~~~~g~~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~ 221 (307)
T 1t9h_A 151 YD----VYLTSSKDQDSLADIIPHFQ-----DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI 221 (307)
T ss_dssp CC----EEECCHHHHTTCTTTGGGGT-----TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE
T ss_pred Ce----EEEEecCCCCCHHHHHhhcC-----CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh
Confidence 54 99999999999999887653 45789999999999999999998765555444321 222466554333
Q ss_pred eeEeCCceEEEECCCCCCCccc
Q 005977 445 GGILPAKAKLYDTPGLLHPHLM 466 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~~ 466 (666)
. ++ ...++||||+....+.
T Consensus 222 ~--~~-~g~v~dtpg~~~~~l~ 240 (307)
T 1t9h_A 222 H--TS-GGLVADTPGFSSLEFT 240 (307)
T ss_dssp E--ET-TEEEESSCSCSSCCCT
T ss_pred h--cC-CEEEecCCCccccccc
Confidence 2 33 5789999999877653
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.65 E-value=5.1e-16 Score=163.09 Aligned_cols=154 Identities=24% Similarity=0.291 Sum_probs=104.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|+|++|+|++++..++ ..+++++. .+.. .+.|+++|+||+||++... ...+..|.. +++..|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~-~~l~~~l~-~~~~---------~~~~~ilV~NK~DL~~~~~-v~~~~~~~~-~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNN-YLLDNMLV-VYEY---------FKVEPVIVFNKIDLLNEEE-KKELERWIS-IYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCH-HHHHHHHH-HHHH---------TTCEEEEEECCGGGCCHHH-HHHHHHHHH-HHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCH-HHHHHHHH-HHHh---------CCCCEEEEEEcccCCCccc-cHHHHHHHH-HHHHCC
Confidence 568999999999999875443 23444443 3332 3468999999999986421 011444543 334556
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC--ceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG--TTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG--TT~~~~~~ 444 (666)
+ .++++||++|.|+++|++.+.. ..++++|.+|+|||||+|+|+ .....++.++.+..-| ||+....+
T Consensus 143 ~----~~~~~SA~~g~gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~ 212 (302)
T 2yv5_A 143 Y----DVLKVSAKTGEGIDELVDYLEG-----FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI 212 (302)
T ss_dssp C----EEEECCTTTCTTHHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE
T ss_pred C----eEEEEECCCCCCHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE
Confidence 4 3999999999999999988763 478899999999999999999 6655555554422234 56544333
Q ss_pred eeEeCCceEEEECCCCCCCcc
Q 005977 445 GGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~ 465 (666)
. ++....++||||+....+
T Consensus 213 ~--~~~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 213 P--FGKGSFVGDTPGFSKVEA 231 (302)
T ss_dssp E--ETTTEEEESSCCCSSCCG
T ss_pred E--cCCCcEEEECcCcCcCcc
Confidence 2 345678999999987665
No 10
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.58 E-value=3.7e-15 Score=156.34 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=100.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|++++..++ ..+++++ ..++. .+.|++||+||+||.+... ...+..|++.+. ..
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l-~~~~~---------~~~piilv~NK~DL~~~~~-v~~~~~~~~~~~-~~- 146 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFL-VLAEK---------NELETVMVINKMDLYDEDD-LRKVRELEEIYS-GL- 146 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHH-HHHHH---------TTCEEEEEECCGGGCCHHH-HHHHHHHHHHHT-TT-
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHH-HHHHH---------CCCCEEEEEeHHHcCCchh-HHHHHHHHHHHh-hh-
Confidence 567899999999999875432 2333333 22322 3468999999999975421 122455554321 11
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeeccccc--CCCCceeEEEEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTLGILRI 444 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S--~~PGTT~~~~~~ 444 (666)
. .++.+||++|.|+++|+..+.. ..++++|.+|+|||||+|+|.+......+.+... ....+|+....+
T Consensus 147 ~----~~~~~SAktg~gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~ 217 (301)
T 1u0l_A 147 Y----PIVKTSAKTGMGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL 217 (301)
T ss_dssp S----CEEECCTTTCTTHHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE
T ss_pred C----cEEEEECCCCcCHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE
Confidence 2 3899999999999999998863 4788999999999999999998765544444321 122355443222
Q ss_pred eeEeCCceEEEECCCCCCCcc
Q 005977 445 GGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 445 ~~~l~~~~~liDTPGi~~~~~ 465 (666)
. +.....++||||+....+
T Consensus 218 ~--~~~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 218 K--FDFGGYVVDTPGFANLEI 236 (301)
T ss_dssp E--CTTSCEEESSCSSTTCCC
T ss_pred E--cCCCCEEEECcCCCccCC
Confidence 2 334678999999987765
No 11
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.58 E-value=3.4e-15 Score=160.50 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=101.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.++++|+|++ ||+++|..+. ..+++++... .. .++|++||+||+||++... ...+..|+..+ +..|
T Consensus 127 i~anvD~v~i-v~a~~P~~~~-~~i~r~L~~a-~~---------~~~~~iivlNK~DL~~~~~-~~~~~~~~~~y-~~~G 192 (358)
T 2rcn_A 127 IAANIDQIVI-VSAILPELSL-NIIDRYLVGC-ET---------LQVEPLIVLNKIDLLDDEG-MDFVNEQMDIY-RNIG 192 (358)
T ss_dssp EEECCCEEEE-EEESTTTCCH-HHHHHHHHHH-HH---------HTCEEEEEEECGGGCCHHH-HHHHHHHHHHH-HTTT
T ss_pred HHhcCCEEEE-EEeCCCCCCH-HHHHHHHHHH-Hh---------cCCCEEEEEECccCCCchh-HHHHHHHHHHH-HhCC
Confidence 5689999985 5778876543 3455554321 11 2346799999999997532 22366787654 5678
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcccc-ceeecccccCCCC----ceeEE
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEG-VKVSKLTEAPIPG----TTLGI 441 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~-~~~~~lt~S~~PG----TT~~~ 441 (666)
++ |+++||+++.|+++|...+. +..++++|.+|||||||||.|++... ..++.++. .+| ||+..
T Consensus 193 ~~----v~~~Sa~~~~gl~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~--~~G~g~~tt~~~ 261 (358)
T 2rcn_A 193 YR----VLMVSSHTQDGLKPLEEALT-----GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN--VSGLGQHTTTAA 261 (358)
T ss_dssp CC----EEECBTTTTBTHHHHHHHHT-----TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCC
T ss_pred Cc----EEEEecCCCcCHHHHHHhcC-----CCEEEEECCCCccHHHHHHHHhccccccccCCccc--cCCCCccceEEE
Confidence 64 99999999999999988653 45789999999999999999998765 44443332 223 44432
Q ss_pred EEEeeEeCCceEEEECCCCCCCcc
Q 005977 442 LRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 442 ~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
.- +.++.+..++||||+....+
T Consensus 262 ~i--~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 262 RL--YHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp EE--EECTTSCEEEECHHHHTCCC
T ss_pred EE--EEECCCCEecCcccHHHhhh
Confidence 21 23566778999999987543
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.47 E-value=2.6e-14 Score=150.18 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=106.0
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccc-cccccc---Ccc---
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNE-VAENLI---PDF--- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~-~~q~~i---P~~--- 272 (666)
+||++. +|+||+|| ||+|++.+.+.++++.++++ ++.+..+..... ..++.+ |+.
T Consensus 10 ~g~v~i-vG~~nvGKSTLin~l~g~~~~i~s~~~~t----------------T~~~~~~~~~~~~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 10 VGYVAI-VGKPNVGKSTLLNNLLGTKVSIISPKAGT----------------TRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 (308)
T ss_dssp EEEEEE-ECSTTSSHHHHHHHHHTSCCSCCCSSSCC----------------CCSCEEEEEEETTTEEEEEEECCCCCCC
T ss_pred CCEEEE-ECCCCCcHHHHHHHHhCCCccccCCCCCc----------------eeeEEEEEEecCCCCeEEEEECcCCCcc
Confidence 578877 99999995 55599999997765554433 344444443332 333332 554
Q ss_pred ----hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHH-HHHHHHhhhhhhhhcCCCcEEEEEeCCCCC-C
Q 005977 273 ----DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSL-FKKLEEAKDDAKLSKKLPKLVLVGTKVDLL-P 346 (666)
Q Consensus 273 ----df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L-~~~L~~~~~~~~~~~~~kpvILVlNKiDLL-p 346 (666)
.+.+.|...+.. .+.++|+|++|+|+.+..+ .. +..+ ++.+.. ...|+++|+||+|++ +
T Consensus 73 ~~~~~l~~~~~~~~~~--~l~~aD~il~VvD~~~~~~--~~--~~~~~~~~l~~---------~~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQ--SLEEADVILFMIDATEGWR--PR--DEEIYQNFIKP---------LNKPVIVVINKIDKIGP 137 (308)
T ss_dssp CTTCHHHHHHHHHHHH--HHHHCSEEEEEEETTTBSC--HH--HHHHHHHHTGG---------GCCCEEEEEECGGGSSS
T ss_pred ccchhHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCC--ch--hHHHHHHHHHh---------cCCCEEEEEECccCCCC
Confidence 344555555555 6788999999999987432 21 2222 344432 346899999999998 4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 347 SQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
... +..++..+.+.++ .+..++++||++|.|+++|++.|.+.++++
T Consensus 138 ~~~----~~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 138 AKN----VLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GGG----GHHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHH----HHHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 443 4455555555554 145699999999999999999999887653
No 13
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.36 E-value=3.2e-13 Score=141.60 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=102.4
Q ss_pred eeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch--HHHH
Q 005977 204 TPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD--FDRV 277 (666)
Q Consensus 204 ~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d--f~~~ 277 (666)
..++||+||+|||+ +|++.+.+.++++.+++ .++.+..|.+.....++. .|++. ....
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~----------------tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~ 73 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ----------------TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA 73 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSS----------------CCSSCEEEEEEETTEEEEEESSSSCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCC----------------cceeeEEEEEEECCeeEEEEECcCCCccchhh
Confidence 45669999999555 59999998764433322 244444444443333333 37765 2223
Q ss_pred HH----HHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH
Q 005977 278 IA----TRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR 353 (666)
Q Consensus 278 L~----~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~ 353 (666)
+. ..+.. ++..+|++++|+|+.++. ..+..+++.+.. .+.|+++|+||+|+... ...
T Consensus 74 l~~~~~~~~~~--~l~~~D~vl~Vvd~~~~~-----~~~~~i~~~l~~---------~~~P~ilvlNK~D~~~~---~~~ 134 (301)
T 1ega_A 74 INRLMNKAASS--SIGDVELVIFVVEGTRWT-----PDDEMVLNKLRE---------GKAPVILAVNKVDNVQE---KAD 134 (301)
T ss_dssp HHHHHTCCTTS--CCCCEEEEEEEEETTCCC-----HHHHHHHHHHHS---------SSSCEEEEEESTTTCCC---HHH
T ss_pred HHHHHHHHHHH--HHhcCCEEEEEEeCCCCC-----HHHHHHHHHHHh---------cCCCEEEEEECcccCcc---HHH
Confidence 33 23334 678999999999997621 223455555542 34689999999999752 223
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
+..+++.+.+.++ +..++++||+++.|+++|++.|...++++
T Consensus 135 ~~~~l~~l~~~~~---~~~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 135 LLPHLQFLASQMN---FLDIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHHTTSC---CSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHhcC---cCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 5556655554455 44699999999999999999999877653
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.35 E-value=3.1e-13 Score=141.88 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=99.8
Q ss_pred CceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch----
Q 005977 202 GFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d---- 273 (666)
|++ ++||+||+|| ||+|++.+.+.++++.++++ ++.+..+.+.....++. .|++.
T Consensus 8 g~V-~ivG~~nvGKSTLln~l~g~~~~ivs~~~~t----------------Tr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFV-AIVGKPNVGKSTLLNNLLGVKVAPISPRPQT----------------TRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEE-EEECSTTSSHHHHHHHHHTSCCSCCCSSSCC----------------CCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred CEE-EEECCCCCCHHHHHHHHhCCceeeecCCCCc----------------eeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 554 4599999995 55599999997655443322 33333333322222332 25543
Q ss_pred -HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChH
Q 005977 274 -FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPT 352 (666)
Q Consensus 274 -f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~ 352 (666)
+...+.+.+.. +..++|++++|+|+.+... ..+..+++.+.... .+.|+++|+||+|+.....
T Consensus 71 ~l~~~~~~~~~~--~l~~ad~il~VvD~~~~~~----~~~~~i~~~l~~~~-------~~~p~ilV~NK~Dl~~~~~--- 134 (301)
T 1wf3_A 71 ALGEFMDQEVYE--ALADVNAVVWVVDLRHPPT----PEDELVARALKPLV-------GKVPILLVGNKLDAAKYPE--- 134 (301)
T ss_dssp HHHHHHHHHHHH--HTSSCSEEEEEEETTSCCC----HHHHHHHHHHGGGT-------TTSCEEEEEECGGGCSSHH---
T ss_pred HHHHHHHHHHHH--HHhcCCEEEEEEECCCCCC----hHHHHHHHHHHhhc-------CCCCEEEEEECcccCCchH---
Confidence 34445555444 6778999999999987532 22455555554310 2468999999999975421
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 353 RLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 353 ~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.+..+++.+ .+ +..++++||++|.|+++|++.|.+.++++
T Consensus 135 ~~~~~~~~~---~~---~~~~~~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 135 EAMKAYHEL---LP---EAEPRMLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHT---ST---TSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHh---cC---cCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence 033333322 22 55699999999999999999998876543
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=4.7e-12 Score=120.96 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=63.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++. . ...+..++..... .......|+++|+||+|+............| .+..+.
T Consensus 85 ~~~~d~ii~v~d~~~~~-----s-~~~~~~~~~~i~~--~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 152 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRD-----T-FVKLDNWLNELET--YCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSM 152 (195)
T ss_dssp HTTCCEEEEEEETTCHH-----H-HHTHHHHHHHHTT--CCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHTTC
T ss_pred hccCCEEEEEEECcCHH-----H-HHHHHHHHHHHHH--hcCcCCCcEEEEEECCcCcccccCHHHHHHH----HHHcCC
Confidence 45689999999998732 1 1111122222110 0011346899999999996655443333433 344553
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhH
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKST 413 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKST 413 (666)
.++.+||+++.|+++|++.|.+.+......+--+..|+||||
T Consensus 153 ----~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 153 ----LFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred ----EEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 389999999999999999998765544445555778999997
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.15 E-value=2.7e-10 Score=108.98 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=58.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.+... ..+..++.++.. ...|+++|+||+|+.+..........+ .+.+...
T Consensus 104 ~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~---------~~~p~i~v~nK~Dl~~~~~~~~~~~~~----~~~~~~~ 166 (195)
T 1svi_A 104 EELKAVVQIVDLRHAPS----NDDVQMYEFLKY---------YGIPVIVIATKADKIPKGKWDKHAKVV----RQTLNID 166 (195)
T ss_dssp TTEEEEEEEEETTSCCC----HHHHHHHHHHHH---------TTCCEEEEEECGGGSCGGGHHHHHHHH----HHHHTCC
T ss_pred hcCCEEEEEEECCCCCC----HHHHHHHHHHHH---------cCCCEEEEEECcccCChHHHHHHHHHH----HHHHccc
Confidence 34589999999987432 122334455543 346899999999998754311112222 2212211
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
....++.+||++|.|+++|++.|.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 134589999999999999999997654
No 17
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.11 E-value=4.8e-11 Score=117.13 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=61.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh--C
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA--G 365 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~--~ 365 (666)
...+|+|++|+|+.+.. . ..+..++..+.. ...|+++|+||+|+++.......+..+.+.+... .
T Consensus 113 ~~~~d~vi~v~d~~~~~--~--~~~~~~~~~l~~---------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPL--T--ELDRRMIEWFAP---------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp CTTEEEEEEEEETTSCC--C--HHHHHHHHHHGG---------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCEEEEEEeCCCCC--C--HHHHHHHHHHHh---------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 34588999999998742 1 234445555543 3468999999999986543111222222222111 0
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
+......++.+||++|.|+++|++.|.+.++.
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 10113459999999999999999999887654
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.08 E-value=1.4e-10 Score=110.33 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=61.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|+|++|+|+.+.. ......+..++.. ...|+++|+||+|+.+..... .....++......+
T Consensus 102 ~~~~~~vi~v~d~~~~~----~~~~~~~~~~~~~---------~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~- 166 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPP----QDSDLMMVEWMKS---------LNIPFTIVLTKMDKVKMSERA-KKLEEHRKVFSKYG- 166 (195)
T ss_dssp CTTEEEEEEEEETTSCC----CHHHHHHHHHHHH---------TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHHSSC-
T ss_pred CcCceEEEEEecCCCCC----CHHHHHHHHHHHH---------cCCCEEEEEEChhcCChHHHH-HHHHHHHHHHhhcC-
Confidence 35679999999997742 1223344455544 346899999999998654321 12222333333323
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
...++.+||++|.|+++|++.|.+.++
T Consensus 167 --~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 --EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp --CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234999999999999999999987654
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.06 E-value=3.7e-10 Score=123.99 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=67.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. ... +..++..+.. .++|+|+|+||+|++...... ...+.+...+.+.
T Consensus 254 ~~~~ad~~llv~D~~~~~--s~~--~~~~~~~~~~---------~~~~iiiv~NK~Dl~~~~~~~--~~~~~~~~~~~l~ 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGI--IEQ--DKRIAGYAHE---------AGKAVVIVVNKWDAVDKDEST--MKEFEENIRDHFQ 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCC--CHH--HHHHHHHHHH---------TTCEEEEEEECGGGSCCCTTH--HHHHHHHHHHHCG
T ss_pred HHHhCCEEEEEEcCCcCC--cHH--HHHHHHHHHH---------cCCcEEEEEECccCCCcchHH--HHHHHHHHHHhcc
Confidence 456799999999998843 222 2233343332 357899999999998754321 1222222222221
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
......++++||++|.|+++|++.|.+.+... ..-=+++.+|.++..
T Consensus 319 ~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~--------~~~~~t~~ln~~l~~ 365 (436)
T 2hjg_A 319 FLDYAPILFMSALTKKRIHTLMPAIIKASENH--------SLRVQTNVLNDVIMD 365 (436)
T ss_dssp GGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH--------TCCCCHHHHHHHHHH
T ss_pred cCCCCCEEEEecccCCCHHHHHHHHHHHHHHh--------hcCCCHHHHHHHHHH
Confidence 11123499999999999999999887653211 011135567777654
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.06 E-value=2.5e-10 Score=105.27 Aligned_cols=85 Identities=26% Similarity=0.194 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... .....+...+.. ...|+++|+||+|+..... .+..+ . ..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~---------~~~p~ilv~nK~Dl~~~~~---~~~~~----~-~~~ 134 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELT----QADYEVAEYLRR---------KGKPVILVATKVDDPKHEL---YLGPL----Y-GLG 134 (161)
T ss_dssp HTTTCSEEEEEEESSSCCC----HHHHHHHHHHHH---------HTCCEEEEEECCCSGGGGG---GCGGG----G-GGS
T ss_pred HHHhCCEEEEEEECCCccc----HhHHHHHHHHHh---------cCCCEEEEEECcccccchH---hHHHH----H-hCC
Confidence 4567999999999988421 223445555543 2358999999999976421 12222 1 334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+..++.+||++|.|+++|++.|.+.+
T Consensus 135 ---~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 135 ---FGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---CCCeEEEecccCCChHHHHHHHHHhC
Confidence 33489999999999999999998754
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.05 E-value=1e-09 Score=108.86 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=59.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.+.... .......++..+... ....|+++|+||+|+.............++.+....+.
T Consensus 107 ~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~l~~~-------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 177 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGL-TIKEQINLFYSIKSV-------FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN- 177 (228)
T ss_dssp TSSEEEEEEEETTCTTSS-CHHHHHHHHHHHHTC-------C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS-
T ss_pred ccccEEEEEEecccccCc-chHHHHHHHHHHHHh-------hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC-
Confidence 457899999999986432 222122333333321 02568999999999987544222222233344444431
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 178 -~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 178 -PIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp -CEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -CceEEEEecccCCCHHHHHHHHHHH
Confidence 1358999999999999999988765
No 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.05 E-value=1.6e-10 Score=109.23 Aligned_cols=106 Identities=22% Similarity=0.148 Sum_probs=63.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+. .++..+.... .....|+++|+||+|+..... .......+ .+..
T Consensus 74 ~~~~~~~~i~v~d~~~~~s--~~~~~-~~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 141 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKS--FEVIK-VIHGKLLDMV-----GKVQIPIMLVGNKKDLHMERVISYEEGKAL----AESW 141 (181)
T ss_dssp GTTTCSEEEEEEETTCHHH--HHHHH-HHHHHHHHHC---------CCEEEEEECTTCTTTCCSCHHHHHHH----HHHT
T ss_pred HHhcCCEEEEEEECCCHHH--HHHHH-HHHHHHHHhc-----CCCCCCEEEEEECccchhcceecHHHHHHH----HHHh
Confidence 3467999999999987421 11111 1222222110 113568999999999975433 33333333 3455
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEccCCCChhH
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGAQNAGKST 413 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKST 413 (666)
+. .++.+||++|.|+++|++.|.+.+... -|..++||||
T Consensus 142 ~~----~~~~~Sa~~~~~v~~l~~~l~~~~~~~-----~~~~~~gkss 180 (181)
T 3t5g_A 142 NA----AFLESSAKENQTAVDVFRRIILEAEKM-----DGACSQGKSS 180 (181)
T ss_dssp TC----EEEECCTTSHHHHHHHHHHHHHHHHTC----------CCBSC
T ss_pred CC----cEEEEecCCCCCHHHHHHHHHHHHHHh-----cCCcccCcCC
Confidence 54 389999999999999999987765432 2677889986
No 23
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.04 E-value=5.6e-10 Score=103.63 Aligned_cols=157 Identities=17% Similarity=0.058 Sum_probs=75.8
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcchHHHHHHHH
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFDFDRVIATR 281 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~df~~~L~~~ 281 (666)
|-.+++|.||+|||+| |++.+.+........ ...+.... ...+.... -.-+.+|+..-.+.+...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~-~~i~D~~g~~~~~~~~~~ 68 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAA----------GHTYDRSI---VVDGEEAS-LMVYDIWEQDGGRWLPGH 68 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC--------------------CEEEEEE---EETTEEEE-EEEEECC-----------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCcc----------ccceEEEE---EECCEEEE-EEEEECCCCccchhhhhh
Confidence 4456799999996555 999877643222111 11111111 11111000 001123444322222222
Q ss_pred hcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHH
Q 005977 282 LMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRH 360 (666)
Q Consensus 282 l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~ 360 (666)
....+|++++|+|+.++.. ...+.. ++..+.... .....|+++|+||+|+.+... ...... .
T Consensus 69 -----~~~~~~~~i~v~d~~~~~s--~~~~~~-~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~ 131 (166)
T 3q72_A 69 -----CMAMGDAYVIVYSVTDKGS--FEKASE-LRVQLRRAR-----QTDDVPIILVGNKSDLVRSREVSVDEGR----A 131 (166)
T ss_dssp ---------CCEEEEEEETTCHHH--HHHHHH-HHHHHHHCC--------CCCEEEEEECTTCCSSCCSCHHHHH----H
T ss_pred -----hhhhCCEEEEEEECCCHHH--HHHHHH-HHHHHHHhc-----CCCCCCEEEEEeccccccccccCHHHHH----H
Confidence 3467899999999987421 111112 222222210 013568999999999986543 222222 2
Q ss_pred HHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+....+. .++.+||++|.|+++|++.|.+.
T Consensus 132 ~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 132 CAVVFDC----KFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHTTC----EEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhCC----cEEEeccCCCCCHHHHHHHHHHH
Confidence 3344553 38999999999999999988764
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.04 E-value=6.3e-10 Score=106.36 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=58.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-PTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.+.... ...... +....+
T Consensus 86 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~ 152 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQES--FNNV-KQWLQEIDRY------ASENVNKLLVGNKCDLTTKKVVDYTTAKE----FADSLG 152 (196)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECTTCTTTCCSCHHHHHH----HHHHTT
T ss_pred HhhCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCCEEEEEECcccccccccCHHHHHH----HHHHcC
Confidence 456899999999987321 0111 2222333322 1135689999999999865432 222333 334556
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+ ++.+||++|.|++++++.|.+.
T Consensus 153 ~~----~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 153 IP----FLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp CC----EEEECTTTCTTHHHHHHHHHHH
T ss_pred Cc----EEEEeCCCCCCHHHHHHHHHHH
Confidence 43 8999999999999999888765
No 25
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=6.6e-10 Score=102.96 Aligned_cols=96 Identities=23% Similarity=0.184 Sum_probs=58.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++.. ...+ ..++..+... .....|+++|+||+|+.+..............+.+..+.
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQS--FIKA-RHWVKELHEQ------ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL 143 (170)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC
T ss_pred hccCcEEEEEEecCChHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC
Confidence 456899999999987421 1111 1222223221 113568999999999986421111112222333334443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.++.+||++|.|+++|++.|.+.+.
T Consensus 144 ----~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 144 ----LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999987654
No 26
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.01 E-value=2.1e-10 Score=118.33 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcch-----
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD----- 273 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~d----- 273 (666)
+..+++|.||+|||+| |++.+.+.. ......++....++.+......+ .+|+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~-----------------v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQR-----------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEE-----------------EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcc-----------------cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 4567899999996555 999887621 11122223333333332211111 124421
Q ss_pred -----HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 274 -----FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 274 -----f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
....+.+... ....+|++++|+|+.++ .....+...+.. .+.|+++|+||+|+....
T Consensus 67 ~~~~~~~e~i~~~~~---~~~~~d~ii~VvD~~~~------~~~~~~~~~l~~---------~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 67 SSQTSLDEQIACHYI---LSGDADLLINVVDASNL------ERNLYLTLQLLE---------LGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp ---CCHHHHHHHHHH---HHTCCSEEEEEEEGGGH------HHHHHHHHHHHH---------HTCCEEEEEECHHHHHHT
T ss_pred cccCCHHHHHHHHHH---hhcCCCEEEEEecCCCh------HHHHHHHHHHHh---------cCCCEEEEEECccchhhh
Confidence 2223322211 23579999999999872 112233344433 246899999999997543
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.....+..+ .+.+|.+ ++++||++|.|+++|++.|.+.++.
T Consensus 129 ~~~~~~~~l----~~~lg~~----~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 129 NIRIEIDAL----SARLGCP----VIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp TEEECHHHH----HHHHTSC----EEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHH----HHhcCCC----EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 311112332 3344654 9999999999999999999887653
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.00 E-value=7.9e-10 Score=123.15 Aligned_cols=157 Identities=13% Similarity=-0.012 Sum_probs=78.8
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcchHHH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~df~~ 276 (666)
.|+..++||+||+|| |++|++.+.+..+++..+.+ ++......+......+. .|++.-..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gt----------------T~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGT----------------TRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc----------------eEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 478888999999995 55599999876666555543 22211111111111111 25542111
Q ss_pred -----HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 277 -----VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 277 -----~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
...+.... ....+|+|++|+|+.++..... .......+... ...|+|+|+||+|+.+...
T Consensus 296 ~~ve~~gi~~~~~--~~~~aD~vl~VvD~s~~~s~~~---~~~~~~~l~~l--------~~~piIvV~NK~Dl~~~~~-- 360 (476)
T 3gee_A 296 EEIEHEGIRRSRM--KMAEADLILYLLDLGTERLDDE---LTEIRELKAAH--------PAAKFLTVANKLDRAANAD-- 360 (476)
T ss_dssp ------------C--CCSSCSEEEEEEETTTCSSGGG---HHHHHHHHHHC--------TTSEEEEEEECTTSCTTTH--
T ss_pred hHHHHHHHHHHHh--hcccCCEEEEEEECCCCcchhh---hHHHHHHHHhc--------CCCCEEEEEECcCCCCccc--
Confidence 11112233 5678999999999998643211 11122223221 2468999999999986543
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
... +.+.+. + +..++.+||++|.|+++|++.|.+.+.
T Consensus 361 --~~~--~~l~~~-~---~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 361 --ALI--RAIADG-T---GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --HHH--HHHHHH-H---TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --hhH--HHHHhc-C---CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 111 111121 1 124899999999999999999987653
No 28
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.00 E-value=2.5e-10 Score=116.87 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=86.3
Q ss_pred eeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcc--------
Q 005977 205 PAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDF-------- 272 (666)
Q Consensus 205 ~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~-------- 272 (666)
.+++|.||+|||+| |++.+.+.. ......++.....+.+......+. +|+.
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~-----------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 66 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQR-----------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAE 66 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEE-----------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC----
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-----------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccccccccc
Confidence 46799999996555 999887611 112223333333333322111211 2543
Q ss_pred --hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC
Q 005977 273 --DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS 350 (666)
Q Consensus 273 --df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~ 350 (666)
.....+.+... ....+|+|++|+|+.++ .....+...+.. ...|+++|+||+|+......
T Consensus 67 ~~~~~e~i~~~~~---~~~~~d~vi~VvDas~~------~~~~~l~~~l~~---------~~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 67 GISQDEQIAAQSV---IDLEYDCIINVIDACHL------ERHLYLTSQLFE---------LGKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp --CHHHHHHHHHH---HHSCCSEEEEEEEGGGH------HHHHHHHHHHTT---------SCSCEEEEEECHHHHHHTTC
T ss_pred CCCHHHHHHHHHH---hhCCCCEEEEEeeCCCc------hhHHHHHHHHHH---------cCCCEEEEEEChhcCCcCCc
Confidence 22223433322 12579999999999872 112233333332 34689999999999855432
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 351 PTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 351 ~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+.. +.+.+|.+ ++++||++|.|+++|++.|.+.
T Consensus 129 ~~~~~~----l~~~lg~~----vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 SIDTEK----LESLLGCS----VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHH----HHHHHCSC----EEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHH----HHHHcCCC----EEEEECCCCCCHHHHHHHHHhh
Confidence 221222 23345654 9999999999999999999875
No 29
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.98 E-value=3.1e-10 Score=124.73 Aligned_cols=112 Identities=20% Similarity=0.149 Sum_probs=71.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. .. .+..+...+.. ..+|+++|+||+|++..... ....+.+...+.+.
T Consensus 260 ~i~~ad~vllv~d~~~~~--~~--~~~~i~~~l~~---------~~~~~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGI--TR--QDQRMAGLMER---------RGRASVVVFNKWDLVVHREK--RYDEFTKLFREKLY 324 (439)
T ss_dssp HHHHCSEEEEEEETTTCC--CH--HHHHHHHHHHH---------TTCEEEEEEECGGGSTTGGG--CHHHHHHHHHHHCG
T ss_pred HHhhCCEEEEEEeCCCCC--CH--HHHHHHHHHHH---------cCCCEEEEEECccCCCchhh--HHHHHHHHHHHHhc
Confidence 345689999999998732 21 12334444443 34689999999999864321 12223222223322
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCCC-ccEEEEccCCCChhHHHHhhhccc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGPR-GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~-~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
......++++||++|.|+++|++.|.+..... .++ +|+.+|.+++..
T Consensus 325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i---------~t~~ln~~l~~~ 372 (439)
T 1mky_A 325 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKV---------PSSAINSALQKV 372 (439)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCC---------CHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccC---------CHHHHHHHHHHH
Confidence 11133589999999999999999987654321 111 689999998754
No 30
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.98 E-value=3.4e-09 Score=101.58 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=58.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+...+...+... ...+.|+++|+||+|+..... ...+...+....-.
T Consensus 88 ~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~ 155 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEK--IEASKNELHNLLDKP------QLQGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQ 155 (188)
T ss_dssp HTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred HccCCEEEEEEECCCHHH--HHHHHHHHHHHHhCc------ccCCCCEEEEEECCCCccCCC----HHHHHHHhChhhhc
Confidence 457999999999987531 122222332222211 013568999999999986533 22222221111000
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.....++.+||++|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 156 DREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01124789999999999999999987654
No 31
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.97 E-value=1.6e-09 Score=119.73 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=62.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-PTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-~~~L~~wl~~~~k~~ 365 (666)
.+..+|++|+|+|+.+.. . ..+..++..+.. .++|+|+|+||+|++..... ...+..+++......
T Consensus 274 ~~~~ad~~llviD~~~~~--~--~~~~~~~~~~~~---------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGI--I--EQDKRIAGYAHE---------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHCSEEEEEEETTTCC--C--HHHHHHHHHHHH---------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCCc--C--HHHHHHHHHHHH---------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 456799999999998732 2 234445554443 34689999999999875432 233344443322211
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+ ...++++||++|.|+++|++.|.+.+
T Consensus 341 ~---~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 341 D---YAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp T---TSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred C---CCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 2 23499999999999999999987654
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.96 E-value=2.8e-09 Score=98.83 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=59.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+.... ....|+++|+||+|+..... ....... +....+
T Consensus 76 ~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~------~~~~~iilv~nK~Dl~~~~~v~~~~~~~----~~~~~~ 142 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEET---FSTLKNWVRELRQHG------PPSIVVAIAGNKCDLTDVREVMERDAKD----YADSIH 142 (170)
T ss_dssp HTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHS------CTTSEEEEEEECTTCGGGCCSCHHHHHH----HHHHTT
T ss_pred CcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhC------CCCCcEEEEEECCccccccccCHHHHHH----HHHHcC
Confidence 456899999999987321 111122333343321 14568999999999986433 2223333 334455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 143 ~----~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 A----IFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred C----EEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 3 3899999999999999999987643
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.95 E-value=1.6e-09 Score=100.52 Aligned_cols=91 Identities=25% Similarity=0.297 Sum_probs=59.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+............+. +..+.
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (170)
T 1g16_A 73 YRGAMGIILVYDITDERT--FTNI-KQWFKTVNEHA------NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGI 139 (170)
T ss_dssp HTTEEEEEEEEETTCHHH--HHTH-HHHHHHHHHHS------CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc------CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCC
Confidence 457899999999987421 1111 22223333211 13568999999999965554444444443 33454
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+ ++.+||++|.|+++|++.|.+.+
T Consensus 140 ~----~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 140 P----FIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp C----EEECBTTTTBSHHHHHHHHHHHH
T ss_pred e----EEEEECCCCCCHHHHHHHHHHHH
Confidence 3 89999999999999999987653
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.95 E-value=3.7e-09 Score=99.48 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=59.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+... .....|+++|+||+|+..... ....+..| .+..+
T Consensus 82 ~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~------~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~ 148 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQAS---FERAKKWVQELQAQ------GNPNMVMALAGNKSDLLDARKVTAEDAQTY----AQENG 148 (181)
T ss_dssp HTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHH------SCTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH---HHHHHHHHHHHHHh------cCCCCcEEEEEECCcccccccCCHHHHHHH----HHHcC
Confidence 456899999999987321 11112222333321 113568999999999985433 33333433 34455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 149 ~----~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 149 L----FFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp C----EEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred C----EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4 3899999999999999999987654
No 35
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.95 E-value=7.2e-09 Score=95.87 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++.. + ......+...+... ...+.|+++|+||+|+..... ...+........-
T Consensus 64 ~~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 131 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRER-V-NEAREELMRMLAED------ELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL 131 (164)
T ss_dssp HTTTCSEEEEEEETTCGGG-H-HHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGC
T ss_pred HhccCCEEEEEEECCCHHH-H-HHHHHHHHHHHhch------hhcCCeEEEEEECcCCcCCCC----HHHHHHHhCcccc
Confidence 3457999999999987531 1 12222222222110 013568999999999976432 2222211111100
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
...--.++.+||++|.|+++|++.|.+.+.
T Consensus 132 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 132 RHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp SSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 000113889999999999999999987643
No 36
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.95 E-value=2e-09 Score=104.41 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=58.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+............|. ...+.
T Consensus 90 ~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~i~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 156 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERT--FTNI-KQWFKTVNEHA------NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGI 156 (213)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHT------TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc------CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCC
Confidence 457899999999987321 1111 22223333211 13568999999999965544433344443 33454
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+ ++.+||++|.|+++|++.|.+.+
T Consensus 157 ~----~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 157 P----FIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp C----EEECBTTTTBSSHHHHHHHHHHH
T ss_pred E----EEEEeCCCCCCHHHHHHHHHHHH
Confidence 3 89999999999999999887653
No 37
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.94 E-value=2.3e-10 Score=108.88 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=56.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+..... ...++..+.... ..+.|+++|+||+||...... |. +..+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~----~~~~~~~~~~~~------~~~~p~ilv~NK~Dl~~~~~~------~~----~~~~ 139 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD----PAEIWPEFIARL------PAKLPITVVRNKADITGETLG------MS----EVNG 139 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS----HHHHCHHHHHHS------CTTCCEEEEEECHHHHCCCCE------EE----EETT
T ss_pred HHHhCCEEEEEEECCCCCCHH----HHHHHHHHHHhc------ccCCCEEEEEECccCCcchhh------hh----hccC
Confidence 356799999999998865422 122333333321 134689999999999643221 10 1112
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
..++.+||++|.|+++|++.|.+.+
T Consensus 140 ----~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 140 ----HALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ----EEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred ----CceEEEeCCCCCCHHHHHHHHHHHh
Confidence 2489999999999999999998764
No 38
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.94 E-value=1.5e-09 Score=101.51 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=56.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+.... .....|+++|+||+|+.+... .......|. ...+
T Consensus 75 ~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~-----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~ 142 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGS---FESASELRIQLRRTH-----QADHVPIILVGNKADLARCREVSVEEGRACA----VVFD 142 (175)
T ss_dssp TTSCSEEEEEEETTCHHH---HHHHHHHHHHHHHCC---------CCEEEEEECTTCTTTCCSCHHHHHHHH----HHHT
T ss_pred cccCCEEEEEEECCCHHH---HHHHHHHHHHHHHhh-----ccCCCCEEEEEEChhhccccccCHHHHHHHH----HHcC
Confidence 456899999999987421 111122223333210 012468999999999986432 333333332 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 143 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 143 C----KFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp S----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----eEEEEecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 39
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.94 E-value=3.2e-09 Score=98.26 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=58.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+..... .......| ....+
T Consensus 76 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 142 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEES--FARAK-NWVKELQRQ------ASPNIVIALSGNKADLANKRAVDFQEAQSY----ADDNS 142 (170)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHHH-HHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred ccCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECccCccccccCHHHHHHH----HHHcC
Confidence 456899999999987421 11122 222223221 113568999999999975432 22333333 33445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.++
T Consensus 143 ~----~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 L----LFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3 3899999999999999999987654
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.94 E-value=2.4e-09 Score=101.25 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=59.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+ ..+...+.... .....|+++|+||+|+.........+..+. +..+.
T Consensus 73 ~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~-----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKS--FEDI-HHYREQIKRVK-----DSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGI 140 (189)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHT-----TCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTC
T ss_pred HhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCC
Confidence 346899999999987321 1111 12222222211 113568999999999987665544444443 34454
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+ ++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 141 P----FIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp C----EEECCTTTCTTHHHHHHHHHHH
T ss_pred e----EEEEeCCCCCCHHHHHHHHHHH
Confidence 3 8999999999999999988765
No 41
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.93 E-value=6.1e-09 Score=100.54 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=58.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. + ......++..+... .....|+++|+||+|+..... ....+..|. +..
T Consensus 77 ~~~~~d~ii~v~d~~~~~-s--~~~~~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 143 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEE-S--FNAVQDWSTQIKTY------SWDNAQVLLVGNKCDMEDERVVSSERGRQLA----DHL 143 (203)
T ss_dssp TGGGCSEEEEEEETTCHH-H--HHHHHHHHHHHHHH------SCSSCEEEEEEECTTCTTSCCSCHHHHHHHH----HHH
T ss_pred hhcCCCEEEEEEECcCHH-H--HHHHHHHHHHHHHh------cCCCCCEEEEEECcccCcccccCHHHHHHHH----HHC
Confidence 456799999999998732 1 11112222333321 113568999999999986432 333334443 344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 144 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 144 GF----EFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp TC----EEEECBTTTTBSSHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988754
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.92 E-value=3.3e-09 Score=99.24 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=58.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+.... ....|+++|+||+|+.... .....+..| .+..+
T Consensus 85 ~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 151 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRST---YNHLSSWLTDARNLT------NPNTVIILIGNKADLEAQRDVTYEEAKQF----AEENG 151 (179)
T ss_dssp HHTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHS------CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEeCcCHHH---HHHHHHHHHHHHHhc------CCCCcEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 456899999999987421 111112223233221 1356899999999997533 233334444 34455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 152 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 152 L----LFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 4 38999999999999999988764
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.92 E-value=2.5e-09 Score=99.51 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=57.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+...+. .+.... ...+.|+++|+||+|+... .........+ .+..+
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~-~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRS--FSKVPETLL-RLRAGR-----PHHDLPVILVGNKSDLARSREVSLEEGRHL----AGTLS 140 (169)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHHHHHH-HHHHHS-----TTSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCChHH--HHHHHHHHH-HHHhcc-----cCCCCCEEEEeeCcchhhcccCCHHHHHHH----HHHcC
Confidence 456899999999987321 111222222 222210 1125799999999999743 3333333333 34555
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 C----KHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----cEEEecCccCCCHHHHHHHHHHH
Confidence 3 38999999999999999988764
No 44
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=3.9e-09 Score=101.20 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=58.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+... .....|+++|+||+|+..... .......+ .+..
T Consensus 92 ~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 158 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEES---FNAVQDWATQIKTY------SWDNAQVILVGNKCDMEEERVVPTEKGQLL----AEQL 158 (191)
T ss_dssp HHTTCCEEEEEEETTCHHH---HHTHHHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HHccCCEEEEEEECcCHHH---HHHHHHHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHHH----HHHc
Confidence 3457999999999987321 11112233333332 113568999999999975433 22333333 3344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 159 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 159 GF----DFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp TC----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988764
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=4.6e-09 Score=101.00 Aligned_cols=92 Identities=23% Similarity=0.229 Sum_probs=60.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+... ......+..| .+..+
T Consensus 93 ~~~~d~iilV~d~~~~~s--~~~~-~~~~~~i~~~~------~~~~piiiv~NK~Dl~~~~~v~~~~~~~~----~~~~~ 159 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDS--FYTL-KKWVKELKEHG------PENIVMAIAGNKCDLSDIREVPLKDAKEY----AESIG 159 (192)
T ss_dssp HTTCSEEEEEEETTCTHH--HHHH-HHHHHHHHHHS------CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHTTT
T ss_pred hccCCEEEEEEeCCCHHH--HHHH-HHHHHHHHHhC------CCCCcEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 456899999999987421 1111 22223333221 135689999999999753 3333334443 34555
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||+++.|+++|++.|.+.+.
T Consensus 160 ~----~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 160 A----IVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred C----EEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 3 3899999999999999999987654
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.91 E-value=9.7e-10 Score=105.28 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=84.9
Q ss_pred CCCceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcchHH
Q 005977 200 LDGFTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFDFD 275 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~df~ 275 (666)
...+..+++|.+|+|||+ ++++.+.+...+.. .......... +......+ .+|+..-.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---------~~t~~~~~~~---------~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---------TATVGYNVET---------FEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CC---------CCCSSEEEEE---------EEETTEEEEEEEECCSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---------ccccceeEEE---------EEeCCEEEEEEECCCCHhH
Confidence 345666889999999655 49998877331100 0011111111 11111111 12554322
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhh-hcCCCcEEEEEeCCCCCCCCCChHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKL-SKKLPKLVLVGTKVDLLPSQVSPTRL 354 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~-~~~~kpvILVlNKiDLLpk~~~~~~L 354 (666)
..+.. . ....+|++|+|+|+.+... ...+...+...+......... .....|+|||+||+||..... ...+
T Consensus 77 ~~~~~---~--~~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~ 148 (199)
T 4bas_A 77 RGLWE---T--YYDNIDAVIFVVDSSDHLR--LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAEL 148 (199)
T ss_dssp GGGGG---G--GCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHH
T ss_pred HHHHH---H--HHhcCCEEEEEEECCcHHH--HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHH
Confidence 21111 1 4568999999999998531 122223333322210000000 001568999999999987643 2223
Q ss_pred HHHHHHHH--HhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 355 DRWVRHRA--KAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 355 ~~wl~~~~--k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+.... +..+ ..++.+||++|.|+++|++.|.+.
T Consensus 149 ~~~~~~~~~~~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 149 VEILDLTTLMGDHP----FVIFASNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp HHHHTHHHHHTTSC----EEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhcchhhccCCe----eEEEEeeCCCccCHHHHHHHHHHH
Confidence 32221111 2222 248999999999999999998765
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.91 E-value=7.7e-09 Score=96.16 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=59.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.. .......+...+... .....|+++|+||+|+..... ...+...+....-
T Consensus 71 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 138 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDR--IGISKSELVAMLEEE------ELRKAILVVFANKQDMEQAMT----SSEMANSLGLPAL 138 (171)
T ss_dssp GCTTCSEEEEEEETTCCTT--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGC
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHHhch------hhCCCEEEEEEECCCCcCCCC----HHHHHHHhCchhc
Confidence 4568999999999988542 222333333322211 013568999999999986543 2222222111100
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
...--.++.+||++|.|+++|++.|.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 139 KDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 00011489999999999999999987654
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.91 E-value=5e-09 Score=99.62 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=59.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+............+..++.... ......|+++|+||+||... .....+..+ .+..+
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~----~~~~~~piilv~NK~Dl~~~-~~~~~~~~~----~~~~~ 164 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG----LTLDDVPIVIQVNKRDLPDA-LPVEMVRAV----VDPEG 164 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT----CCTTSSCEEEEEECTTSTTC-CCHHHHHHH----HCTTC
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc----cccCCCCEEEEEEchhcccc-cCHHHHHHH----HHhcC
Confidence 3457999999999985311001111223333343320 01135689999999999765 333334443 33444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. ..++.+||++|.|+++|++.|.+.
T Consensus 165 ~---~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 165 K---FPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp C---SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred C---ceEEEEecCCCcCHHHHHHHHHHH
Confidence 3 248999999999999999988754
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.91 E-value=2.5e-09 Score=98.47 Aligned_cols=91 Identities=23% Similarity=0.204 Sum_probs=56.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... ...+...+ ..+.... .....|+++|+||+|+..... .......+ .+..+
T Consensus 72 ~~~~~~~i~v~d~~~~~s--~~~~~~~~-~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQS--FQDIKPMR-DQIIRVK-----RYEKVPVILVGNKVDLESEREVSSSEGRAL----AEEWG 139 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHHH-HHHHHHT-----TTSCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHT
T ss_pred hccCCEEEEEEeCCCHHH--HHHHHHHH-HHHHHhc-----CCCCCCEEEEEECCcccccccCCHHHHHHH----HHHhC
Confidence 356899999999987421 11111222 2222210 113578999999999975432 22333333 33345
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+ ++.+||++|.|+++|++.|.+.
T Consensus 140 ~~----~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 CP----FMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp SC----EEEECTTCHHHHHHHHHHHHHH
T ss_pred CC----EEEecCCCCcCHHHHHHHHHHH
Confidence 43 8999999999999999998764
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=7.2e-09 Score=97.36 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=59.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+..... .......|. +..
T Consensus 80 ~~~~~d~ii~v~d~~~~~s--~~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 146 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKAS--FDNI-QAWLTEIHEY------AQHDVALMLLGNKVDSAHERVVKREDGEKLA----KEY 146 (180)
T ss_dssp CGGGCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------SCTTCEEEEEEECCSTTSCCCSCHHHHHHHH----HHH
T ss_pred HccCCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------CCCCCcEEEEEECcccCcccccCHHHHHHHH----HHc
Confidence 5678999999999987421 0111 1222323221 113568999999999986433 323334333 334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+.+ ++.+||+++.|+++|++.|.+.+
T Consensus 147 ~~~----~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 147 GLP----FMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHHH
Confidence 543 89999999999999999987653
No 51
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.90 E-value=1.7e-09 Score=120.69 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=55.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++|+|+|+.++.. . . +..+++.+ ..+|+|+|+||+||.+. .....+..+ . ..+
T Consensus 320 ~~~~aD~vl~VvD~s~~~s--~-~-~~~il~~l-----------~~~piivV~NK~DL~~~-~~~~~~~~~----~-~~~ 378 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLD--E-E-DRKILERI-----------KNKRYLVVINKVDVVEK-INEEEIKNK----L-GTD 378 (482)
T ss_dssp HHHHCSEEEEEEETTSCCC--H-H-HHHHHHHH-----------TTSSEEEEEEECSSCCC-CCHHHHHHH----H-TCS
T ss_pred HhhcccEEEEEecCCCCCC--H-H-HHHHHHHh-----------cCCCEEEEEECcccccc-cCHHHHHHH----h-cCC
Confidence 3467999999999987532 1 1 22333322 23589999999999754 222223322 1 122
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 379 ~----~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 379 R----HMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp T----TEEEEEGGGTCCHHHHHHHHHHH
T ss_pred C----cEEEEECCCCCCHHHHHHHHHHH
Confidence 2 38999999999999999999864
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.90 E-value=1.1e-08 Score=97.33 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=56.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.++.. ...+ ..++..+... ...|+++|+||+|+.........+..|+ +..+.
T Consensus 114 ~~~~d~~i~v~D~~~~~s--~~~~-~~~~~~i~~~--------~~~piilv~NK~D~~~~~~~~~~~~~~~----~~~~~ 178 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNT--LDRA-KTWVNQLKIS--------SNYIIILVANKIDKNKFQVDILEVQKYA----QDNNL 178 (208)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHH--------SCCEEEEEEECTTCC-CCSCHHHHHHHH----HHTTC
T ss_pred hcCCCEEEEEEECCCHHH--HHHH-HHHHHHHHhh--------CCCcEEEEEECCCcccccCCHHHHHHHH----HHcCC
Confidence 456899999999987421 1111 1222222221 2378999999999333344434444443 34453
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||++|.|+++|++.|.+.
T Consensus 179 ----~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 179 ----LFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp ----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----cEEEEecCCCCCHHHHHHHHHHH
Confidence 48999999999999999988754
No 53
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.4e-09 Score=122.72 Aligned_cols=172 Identities=12% Similarity=0.031 Sum_probs=87.0
Q ss_pred CCCceeeeccCCCchHH-HHHHHhhhhhhHHHHHHHH--HHHhhhcCcce------------eecceecceecceecccc
Q 005977 200 LDGFTPAGVGYGNITEE-LVERSKKKKLSKAERKKKA--REAQKEKGEVT------------VCARCHSLRNYGQVKNEV 264 (666)
Q Consensus 200 l~G~~~a~vGrpNvg~t-lLn~l~~~Kvs~~~rK~~a--~~~~~~~~~~~------------~CqRC~rLr~ygkv~~~~ 264 (666)
-+-+-.++||+||+||| |+|+|.+....+..+...+ +++........ .-+..+....+..+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45677888999999955 5599987754333321110 00000000000 000112222222222222
Q ss_pred cccc---cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCC--CCC---CcHHHHHHHHHHHHHhhhhhhhhcCCCcE
Q 005977 265 AENL---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDF--DGM---FPKRAAKSLFKKLEEAKDDAKLSKKLPKL 335 (666)
Q Consensus 265 ~q~~---iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df--~gs---~p~~id~~L~~~L~~~~~~~~~~~~~kpv 335 (666)
.++. .|++. |.+.+ .. ....+|++|+|||+.+. ... .+. .. ..+..+... ..+++
T Consensus 245 ~~~~iiDTPG~e~f~~~~----~~--~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~-e~l~~~~~l--------gi~~i 308 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNA----IM--GISQADMAILCVDCSTNAFESGFDLDGQ-TK-EHMLLASSL--------GIHNL 308 (611)
T ss_dssp CEEEEEECCSSSCHHHHH----TT--TSSCCSEEEEEEECSHHHHHTTCCTTSH-HH-HHHHHHHTT--------TCCEE
T ss_pred ceEEEEECCCCcccHHHH----HH--HHhhcCceEEEEECCCCcccccchhhhH-HH-HHHHHHHHc--------CCCeE
Confidence 2222 37763 33332 23 56789999999999862 111 121 11 111222211 33569
Q ss_pred EEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhhH
Q 005977 336 VLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 336 ILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eL 387 (666)
|+|+||+|+++... ....+...+..+....|+.. ...++++||++|.|+.+|
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999986321 11223344444444555321 235899999999999876
No 54
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.90 E-value=2.4e-09 Score=100.61 Aligned_cols=84 Identities=29% Similarity=0.287 Sum_probs=54.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.++|++++|+|+.++. ... .++..+.+ ...|+++|+||+|+............|. +.++.
T Consensus 80 ~~~~~~i~v~D~~~~~-----~~~-~~~~~~~~---------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~- 139 (165)
T 2wji_A 80 EKPDLVVNIVDATALE-----RNL-YLTLQLME---------MGANLLLALNKMDLAKSLGIEIDVDKLE----KILGV- 139 (165)
T ss_dssp HCCSEEEEEEETTCHH-----HHH-HHHHHHHH---------TTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTS-
T ss_pred CCCCEEEEEecCCchh-----HhH-HHHHHHHh---------cCCCEEEEEEchHhccccChhhHHHHHH----HHhCC-
Confidence 3689999999997631 211 22222322 3468999999999864321111133343 23343
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.++.+||++|.|+++|++.|.+.+
T Consensus 140 ---~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 ---KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ---CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ---CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 289999999999999999987653
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.89 E-value=5e-09 Score=97.33 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=59.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+.... ........| .+..
T Consensus 75 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 141 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDS--FQKV-KNWVKELRKML------GNEICLCIVGNKIDLEKERHVSIQEAESY----AESV 141 (170)
T ss_dssp SSTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH------GGGSEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhc------CCCCeEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4578999999999987321 1111 12222233211 1346899999999998643 333334444 3445
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 142 ~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 142 GA----KHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TC----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CC----eEEEecCCCCCCHHHHHHHHHHHH
Confidence 53 389999999999999999987653
No 56
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.88 E-value=8.6e-09 Score=100.21 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=59.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... + ..+ ..++..+.... ....|++||+||+||... ......+..| .+..
T Consensus 98 ~~~~~d~iilv~D~~~~~s-~-~~~-~~~~~~i~~~~------~~~~piilv~NK~Dl~~~~~v~~~~~~~~----~~~~ 164 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSS-F-LSV-PHWIEDVRKYA------GSNIVQLLIGNKSDLSELREVSLAEAQSL----AEHY 164 (201)
T ss_dssp HHTTCSEEEEEEETTBHHH-H-HTH-HHHHHHHHHHS------CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred HHhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHhc------CCCCCEEEEEECCccccccccCHHHHHHH----HHHc
Confidence 3457999999999987321 0 111 12223333211 134689999999999853 2333334444 3445
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. ..++.+||++|.|+++|++.|.+.
T Consensus 165 ~~---~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 165 DI---LCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp TC---SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CC---CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 348999999999999999988764
No 57
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.88 E-value=6.6e-09 Score=95.36 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|.+++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.+.......+..+. +..+.
T Consensus 72 ~~~~~~~i~v~d~~~~~~--~~~~-~~~~~~i~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKS--FEDI-HQYREQIKRVK-----DSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGI 139 (166)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----TCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCC
Confidence 346899999999986321 1111 22223232211 112578999999999987655444444443 34454
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+ ++.+||++|.|+++|++.|.+.+
T Consensus 140 ~----~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 140 P----YIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp C----EEEECTTTCTTHHHHHHHHHHHH
T ss_pred e----EEEecCCCCCCHHHHHHHHHHHH
Confidence 3 99999999999999999987653
No 58
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.87 E-value=2.1e-09 Score=114.93 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..++++|+|+|+.++.+..+......+...|..+.. . ...+|+++|+||+|++... ..++.+ .+.+.
T Consensus 233 ~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~--~--l~~~p~ilV~NK~Dl~~~~---e~~~~l----~~~l~ 301 (342)
T 1lnz_A 233 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL--R--LTERPQIIVANKMDMPEAA---ENLEAF----KEKLT 301 (342)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS--S--TTTSCBCBEEECTTSTTHH---HHHHHH----HHHCC
T ss_pred HHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh--h--hcCCCEEEEEECccCCCCH---HHHHHH----HHHhh
Confidence 34669999999999875444444444445555554210 0 0246899999999997532 123333 23333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. ...++++||+++.|+++|++.|.+.+.
T Consensus 302 ~--~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 302 D--DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp S--CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred c--CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 1 124889999999999999999987654
No 59
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.87 E-value=1.4e-09 Score=112.47 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=56.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.+.. + ...+...+.. ...|+++|+||+|+............+. +.+|.+
T Consensus 79 ~~~d~vi~V~D~t~~e-----~-~~~~~~~l~~---------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~ 139 (272)
T 3b1v_A 79 QRADSILNVVDATNLE-----R-NLYLTTQLIE---------TGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVP 139 (272)
T ss_dssp TCCSEEEEEEEGGGHH-----H-HHHHHHHHHH---------TCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSC
T ss_pred CCCCEEEEEecCCchH-----h-HHHHHHHHHh---------cCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCC
Confidence 4699999999998631 1 1222233332 3468999999999974322111133332 344544
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
++.+||++|.|+++|++.|.+.+.
T Consensus 140 ----vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 140 ----VVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----EEECBTTTTBSHHHHHHHHHHSCT
T ss_pred ----EEEEEccCCCCHHHHHHHHHHHHh
Confidence 999999999999999999987543
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.9e-09 Score=99.80 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... ....|+++|+||+|+.+... .......+ ....
T Consensus 78 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~-------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 143 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAES--FVNV-KRWLHEINQN-------CDDVCRILVGNKNDDPERKVVETEDAYKF----AGQM 143 (181)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHH-------CTTSEEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HhccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh-------CCCCCEEEEEECCCCchhcccCHHHHHHH----HHHc
Confidence 4567999999999987321 1111 1222222221 13468999999999986543 22333333 2334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 144 ~~~----~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 144 GIQ----LFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp TCC----EEECBTTTTBSHHHHHHHHHHH
T ss_pred CCe----EEEEECCCCCCHHHHHHHHHHH
Confidence 433 8999999999999999988764
No 61
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=7.5e-09 Score=99.04 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=60.5
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ......++..+..... .....|+++|+||+|+.+..........+. ...+.
T Consensus 77 ~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 145 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQS---LEELGPIYKLIVQIKG----SVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKC 145 (199)
T ss_dssp HHHCSEEEEEEETTCHHH---HHTTHHHHHHHHHHHS----CGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTC
T ss_pred hccCCEEEEEEECcCHHH---HHHHHHHHHHHHHHhc----CCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCC
Confidence 456899999999987421 1111122233332110 002358999999999987655433344443 33343
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.++.+||++|.|+++|++.|.+....
T Consensus 146 ----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 146 ----AFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ----EEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ----eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 38999999999999999999876543
No 62
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.87 E-value=1.4e-08 Score=96.74 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.+.......+..+. +..+
T Consensus 89 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 156 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKS--FADI-NLYREQIKRVK-----DSDDVPMVLVGNKCDLPTRTVDTKQAHELA----KSYG 156 (190)
T ss_dssp -CTTCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----TCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHT
T ss_pred hhCcCCEEEEEEECcCHHH--HHHH-HHHHHHHHHHh-----CCCCCeEEEEEECCcCCcccCCHHHHHHHH----HHcC
Confidence 4567999999999987421 1111 22222232211 113568999999999987555444455543 3345
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+ ++.+||+++.|+++|++.|.+.
T Consensus 157 ~~----~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 157 IP----FIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp CC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred Ce----EEEEeCCCCCCHHHHHHHHHHH
Confidence 33 8999999999999999988754
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.86 E-value=5.3e-09 Score=96.70 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+.... .....|+++|+||+|+..... ....+..+ .+..+
T Consensus 72 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 139 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQST--FNDLQ-DLREQILRVK-----DTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWC 139 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHH-HHHHHHHHHH-----CCSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH--HHHHH-HHHHHHHHhh-----CcCCCcEEEEEECccccccccCCHHHHHHH----HHHcc
Confidence 346899999999987421 01111 2222222211 113578999999999975432 23333443 33432
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 140 ---~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 140 ---NCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp ---SCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1248999999999999999998764
No 64
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.86 E-value=4.8e-09 Score=98.14 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=58.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+..... .......+. +..+
T Consensus 84 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 150 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNS--FHQTS-KWIDDVRTE------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KELN 150 (179)
T ss_dssp HHTCSEEEEEEETTCHHH--HHTHH-HHHHHHHHH------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hcCCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------cCCCCcEEEEEECCcccccCcCCHHHHHHHH----HHcC
Confidence 456899999999987321 01111 222222221 113568999999999975432 223333332 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.++
T Consensus 151 ~----~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 V----MFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp C----EEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3 3899999999999999999987654
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=4.6e-09 Score=100.20 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=59.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-HHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHR-AKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~-~k~~g 366 (666)
..++|++++|+|+.+.. + ...+...+...+... .....|+++|+||+|+..... ...+..++... .+..+
T Consensus 81 ~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~ 151 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRE-R-ISVTREELYKMLAHE------DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQ 151 (187)
T ss_dssp HTTCCEEEEEEETTCTT-T-HHHHHHHHHHHHTSG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSC
T ss_pred hcCCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhch------hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCC
Confidence 45799999999999853 2 222333332222210 013578999999999976432 22233332110 01111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
-.++.+||++|.|+++|++.|.+.+.
T Consensus 152 ----~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 152 ----WHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp ----EEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ----cEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 25899999999999999999987654
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.86 E-value=6.3e-09 Score=100.81 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+.... ....|+++|+||+|+..... .......| ....
T Consensus 77 ~~~~~d~vilv~d~~~~~s---~~~~~~~~~~i~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 143 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQES---FNGVKMWLQEIDRYA------TSTVLKLLVGNKCDLKDKRVVEYDVAKEF----ADAN 143 (206)
T ss_dssp GGTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHS------CTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHT
T ss_pred hccCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhc------CCCCCEEEEEECCCCccccccCHHHHHHH----HHHc
Confidence 4567999999999987421 111122223333221 13468999999999986432 22333333 3445
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+.+ ++.+||++|.|+++|++.|.+.+
T Consensus 144 ~~~----~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 144 KMP----FLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCe----EEEEeCCCCCCHHHHHHHHHHHH
Confidence 543 89999999999999999987653
No 67
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.86 E-value=2.2e-09 Score=104.40 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=59.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh--
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA-- 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~-- 364 (666)
....+|++++|+|+.+.. + ...+...+...+... .....|+++|+||+|+.. ....+.+..++......
T Consensus 89 ~~~~~d~~i~v~D~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~ 159 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHE-R-LLESKEELDSLMTDE------TIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTG 159 (198)
T ss_dssp GGGGCSEEEEEEETTCGG-G-HHHHHHHHHHHHTCG------GGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCC
T ss_pred HHhcCCEEEEEEECCCHH-H-HHHHHHHHHHHHhCc------ccCCCcEEEEEECCCccc-cCCHHHHHHHhCccccccc
Confidence 456799999999998753 1 122222322222110 013568999999999975 33334444443211000
Q ss_pred CC---C----CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 365 GG---A----PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g---~----~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+ + .....++.+||++|.|++++++.|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 160 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 00 0 012358999999999999999998764
No 68
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.86 E-value=3e-09 Score=101.67 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=59.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+... .....|+++|+||+|+..... ....+..|. +..
T Consensus 91 ~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 157 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQES---FAAVQDWATQIKTY------SWDNAQVILVGNKCDLEDERVVPAEDGRRLA----DDL 157 (189)
T ss_dssp GGTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHH
T ss_pred hccCCCEEEEEEECCCHHH---HHHHHHHHHHHHHh------cCCCCCEEEEEECcccccccCCCHHHHHHHH----HHc
Confidence 4567999999999987321 11112222333321 113568999999999976432 223344443 344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 158 ~~----~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 158 GF----EFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp TC----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred CC----eEEEEECCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999998764
No 69
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.86 E-value=1.1e-08 Score=98.69 Aligned_cols=96 Identities=18% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++|++++|+|+.++.. ...+...+...+... ...+.|+++|+||+|+..... ...+.+.+....-.
T Consensus 94 ~~~~d~iilv~D~~~~~s--~~~~~~~l~~~~~~~------~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~ 161 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRER--VQESADELQKMLQED------ELRDAVLLVFANKQDMPNAMP----VSELTDKLGLQHLR 161 (192)
T ss_dssp HHTCCEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCS
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHHHHHhccc------ccCCCeEEEEEECCCCCCCCC----HHHHHHHhCccccc
Confidence 457899999999988531 122222222222211 013578999999999976432 22222211111000
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
...-.++.+||++|.|+++|++.|.+.+
T Consensus 162 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0012489999999999999999998754
No 70
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.86 E-value=7.1e-09 Score=98.05 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=57.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+.. ++..+... ......|+++|+||+|+.... ........+. +..+
T Consensus 87 ~~~~d~~i~v~d~~~~~s--~~~~~~-~~~~~~~~-----~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 154 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKAS--FEHVDR-FHQLILRV-----KDRESFPMILVANKVDLMHLRKVTRDQGKEMA----TKYN 154 (183)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHHH-HHHHHHHH-----HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH----HHHT
T ss_pred HhcCCEEEEEEECCCHHH--HHHHHH-HHHHHHHh-----cCCCCCcEEEEEECCCchhccCcCHHHHHHHH----HHhC
Confidence 356899999999987421 111122 22222221 011456899999999998633 3333344443 3445
Q ss_pred CCCCCeEEEEecc-cCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAk-kg~Gv~eLl~~I~~~ 394 (666)
.+ ++.+||+ ++.|++++++.|.+.
T Consensus 155 ~~----~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 155 IP----YIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp CC----EEEEBCSSSCBSHHHHHHHHHHH
T ss_pred Ce----EEEeccCCCCCCHHHHHHHHHHH
Confidence 43 8999999 999999999998764
No 71
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.86 E-value=2.7e-08 Score=93.12 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=59.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+ ..++..+..... .......|+++|+||+|+.........+..|.+. ..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~~--~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~~~ 147 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQS--FQNL-SNWKKEFIYYAD--VKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---NGD 147 (177)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHHT--CSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---TTC
T ss_pred HHhcCCEEEEEEECcCHHH--HHHH-HHHHHHHHHHcc--ccccCCCcEEEEEECCcccccccCHHHHHHHHHh---cCC
Confidence 4567999999999987421 1111 222222322110 0000346899999999998555544445554321 223
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|++++++.|.+.
T Consensus 148 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 148 Y----PYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp C----CEEECCTTTCTTHHHHHHHHHHH
T ss_pred c----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 2 38999999999999999988764
No 72
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.86 E-value=3.5e-09 Score=100.62 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++.. ...+...+...+... .....|+++|+||+|+..... ...+..++.. ....
T Consensus 82 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~--~~~~ 150 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQR--MQDCQRELQSLLVEE------RLAGATLLIFANKQDLPGALS-CNAIQEALEL--DSIR 150 (186)
T ss_dssp GCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTG--GGCC
T ss_pred HhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHhCh------hcCCCcEEEEEeCccCCCCCC-HHHHHHHhCh--hhcc
Confidence 4678999999999988531 122222332222211 013578999999999976533 2222222110 0000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. .--.++.+||++|.|+++|++.|.+.+.+
T Consensus 151 ~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 151 S-HHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp S-SCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred C-CceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 0 11248999999999999999999876544
No 73
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.85 E-value=5.9e-09 Score=100.07 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=60.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC---CCChHHHHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS---QVSPTRLDRWVRHRAK 363 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk---~~~~~~L~~wl~~~~k 363 (666)
...++|++++|+|+.+... ...+...+...+... ....|+++|+||+||... ......+..+. +
T Consensus 91 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~ 157 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTS--FDNISTKWEPEIKHY-------IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----Q 157 (194)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH-------CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH----H
T ss_pred hccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHh-------CCCCCEEEEEEChhhccCCCCcccHHHHHHHH----H
Confidence 4568999999999987421 111112233333332 134689999999999853 23333344443 3
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
..+ ...++.+||++|.|+++|++.|.+.+
T Consensus 158 ~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 158 KLG---CVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp HHT---CSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcC---CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 444 23489999999999999999887653
No 74
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.85 E-value=9.6e-09 Score=113.15 Aligned_cols=173 Identities=13% Similarity=0.028 Sum_probs=87.3
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHH--HHHhhhcC------------cceeecceecceecceeccccc
Q 005977 201 DGFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKA--REAQKEKG------------EVTVCARCHSLRNYGQVKNEVA 265 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a--~~~~~~~~------------~~~~CqRC~rLr~ygkv~~~~~ 265 (666)
+-.-.+++|+||+|||+| ++|.++..++.++...+ ++++.... ....-+..+....|..+.....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 345668899999996555 99987754444432111 01100000 0000001111111112222222
Q ss_pred ccc---cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCC--C---cHHHHHHHHHHHHHhhhhhhhhcCCCcEE
Q 005977 266 ENL---IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGM--F---PKRAAKSLFKKLEEAKDDAKLSKKLPKLV 336 (666)
Q Consensus 266 q~~---iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs--~---p~~id~~L~~~L~~~~~~~~~~~~~kpvI 336 (666)
++. .|++. |.+.|.. ....+|++++|||+.+.... + +. ..+. +..+... +.+++|
T Consensus 96 ~~~iiDTPGh~~f~~~~~~------~~~~aD~~ilVVDa~~g~~e~~~~~~~q-t~e~-l~~~~~~--------~v~~iI 159 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIG------GASQADLAVLVISARKGEFETGFEKGGQ-TREH-AMLAKTA--------GVKHLI 159 (439)
T ss_pred EEEEEECCChHHHHHHHHh------hHhhCCEEEEEEECCCCccccccCCCch-HHHH-HHHHHHc--------CCCeEE
Confidence 222 37754 4444433 45679999999999884310 0 11 1122 2222221 233499
Q ss_pred EEEeCCCCCCCCCChHH---HHHHHHHHHHhCCCCC--CCeEEEEecccCcchhhHHH
Q 005977 337 LVGTKVDLLPSQVSPTR---LDRWVRHRAKAGGAPK--LNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 337 LVlNKiDLLpk~~~~~~---L~~wl~~~~k~~g~~~--~~~V~~VSAkkg~Gv~eLl~ 389 (666)
+|+||+|+........+ +..-+..+.+..|+.. ...++++||++|.|+++|.+
T Consensus 160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999999754322222 2222333444555421 22489999999999998554
No 75
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.85 E-value=1.4e-08 Score=96.83 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... .......+...+... .....|+++|+||+|+..... .....+.+....-
T Consensus 80 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~ 147 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKR--FEETGQELTELLEEE------KLSCVPVLIFANKQDLLTAAP----ASEIAEGLNLHTI 147 (181)
T ss_dssp HHTTCSEEEEEEETTCGGG--HHHHHHHHHHHTTCG------GGTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGC
T ss_pred HhCCCCEEEEEEECcCHHH--HHHHHHHHHHHHhCh------hhcCCCEEEEEECcCcccCCC----HHHHHHHhCchhc
Confidence 3457999999999987431 112222222222211 113568999999999986543 2222111100000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
......++.+||++|.|++++++.|.+.+.
T Consensus 148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 148 RDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred cCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 000124889999999999999999987643
No 76
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.85 E-value=1.3e-08 Score=95.49 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+ ..++..+..... .....+++++|+||+|+.... ........|. +..+
T Consensus 77 ~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~~~---~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 146 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQS-F-ENL-EDWYTVVKKVSE---ESETQPLVALVGNKIDLEHMRTIKPEKHLRFC----QENG 146 (178)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHHHH---HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH-H-HHH-HHHHHHHHHHhc---ccCCCCeEEEEEEccccccccccCHHHHHHHH----HHcC
Confidence 456899999999987421 1 111 122233332110 001233489999999997532 3333344443 3344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 147 ~----~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 F----SSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred C----cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 3899999999999999999977543
No 77
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.84 E-value=7.4e-09 Score=115.05 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=87.4
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcchHHH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDR 276 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~df~~ 276 (666)
..+..++||+||||| +|+|++.+.+... ..+ +....++.+......+. +|+....+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--------------~~~------T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--------------TIP------TVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--------------CCC------CSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--------------cCC------ccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 356778899999995 5559888766210 000 22222222222222222 25533222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHH
Q 005977 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+. .. ....+|++|+|+|+.+.. ....+...+...+... .....|+|||+||+||..... ...+.
T Consensus 381 ~~~---~~--~~~~ad~~i~V~D~~~~~--s~~~~~~~~~~~~~~~------~~~~~p~ilv~NK~Dl~~~~~-~~~~~- 445 (497)
T 3lvq_E 381 PLW---RH--YYTGTQGLIFVVDCADRD--RIDEARQELHRIINDR------EMRDAIILIFANKQDLPDAMK-PHEIQ- 445 (497)
T ss_dssp GGG---GG--GGTTCCEEEEEEETTCGG--GHHHHHHHHHHHHTSG------GGTTCEEEEEEECCSSSSCCC-HHHHH-
T ss_pred HHH---HH--HhccCCEEEEEEECcchh--HHHHHHHHHHHHhhhh------hcCCCcEEEEEECCCCCcCCC-HHHHH-
Confidence 221 12 567899999999998843 1122223333322211 013579999999999976433 11122
Q ss_pred HHHHHHHhCCCC----CCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 357 WVRHRAKAGGAP----KLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 357 wl~~~~k~~g~~----~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+.++.. ....++.+||++|.|+++|++.|.+.+.
T Consensus 446 ------~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 446 ------EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp ------HHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred ------HHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222221 1224899999999999999999987643
No 78
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.84 E-value=2.8e-09 Score=109.16 Aligned_cols=84 Identities=25% Similarity=0.257 Sum_probs=56.6
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|+|++|+|+.++. +.. .+...+.. ...|+++|+||+|+............ +.+.+|.+
T Consensus 82 ~~~d~ii~V~D~t~~~-----~~~-~~~~~l~~---------~~~pvilv~NK~Dl~~~~~i~~~~~~----l~~~lg~~ 142 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-----QSL-YLLLEILE---------MEKKVILAMTAIDEAKKTGMKIDRYE----LQKHLGIP 142 (258)
T ss_dssp SCCSEEEEEEETTSCH-----HHH-HHHHHHHT---------TTCCEEEEEECHHHHHHTTCCBCHHH----HHHHHCSC
T ss_pred cCCCEEEEEeCCCchh-----hHH-HHHHHHHh---------cCCCEEEEEECcCCCCccchHHHHHH----HHHHcCCC
Confidence 4689999999998742 211 22233332 34689999999999743321111233 33445654
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+.+
T Consensus 143 ----vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 143 ----VVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----EEEEEeeCCcCHHHHHHHHHHHh
Confidence 99999999999999999987654
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.84 E-value=6e-09 Score=100.73 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-------CCCChHHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-------SQVSPTRLDRWVRH 360 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-------k~~~~~~L~~wl~~ 360 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+||.. ..........|
T Consensus 98 ~~~~d~iilv~d~~~~~s--~~~~-~~~~~~i~~~~------~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~--- 165 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKS--FLNI-REWVDMIEDAA------HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL--- 165 (199)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHC---------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---
T ss_pred HhhCCEEEEEEECCChHH--HHHH-HHHHHHHHHhc------CCCCCEEEEEECcccccccccccccccCHHHHHHH---
Confidence 456899999999987321 1111 22223333211 13468999999999962 22222233333
Q ss_pred HHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 361 RAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 361 ~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+..+. .++.+||++|.|+++|+..|.+.+
T Consensus 166 -~~~~~~----~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 -AMTYGA----LFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp -HHHHTC----EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHcCC----eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 333443 389999999999999999987654
No 80
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.84 E-value=4.4e-09 Score=98.59 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=57.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+...+...+... .....|+++|+||+|+..... .......| ....+
T Consensus 78 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~ 145 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQS--FNEVGKLFTQILRVK------DRDDFPVVLVGNKADLESQRQVPRSEASAF----GASHH 145 (181)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHHHHHHHHHH------TSSCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred HhhCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhc------CCCCCCEEEEEECcccccccccCHHHHHHH----HHHcC
Confidence 346899999999987321 111222222221211 114568999999999986433 22333333 34445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 146 ~----~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 146 V----AYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----eEEEecCCCCCCHHHHHHHHHHH
Confidence 3 48999999999999999988754
No 81
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.84 E-value=5.5e-09 Score=100.03 Aligned_cols=90 Identities=19% Similarity=0.164 Sum_probs=57.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+||.... ........| ....+
T Consensus 95 ~~~~d~vi~v~D~~~~~s--~~~~-~~~l~~i~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 161 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQT--YAVV-ERWLKELYDH------AEATIVVMLVGNKSDLSQAREVPTEEARMF----AENNG 161 (193)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTH-HHHHHHHHTT------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHh------cCCCCeEEEEEECCCcccccccCHHHHHHH----HHHcC
Confidence 456899999999987321 0111 1222222221 11356899999999998643 222333333 34455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 162 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 L----LFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 82
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.1e-08 Score=108.30 Aligned_cols=158 Identities=15% Similarity=0.051 Sum_probs=85.4
Q ss_pred CceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcchHHHH
Q 005977 202 GFTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFDFDRV 277 (666)
Q Consensus 202 G~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~df~~~ 277 (666)
.+..++||.||+|||+| +++.+.+.. ..+ -+....+..+......+. +|+..-...
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~-----------------~~~---pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE-----------------EEE---EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC-----------------Ccc---cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 45678899999996555 888776521 000 022222222222111222 254332111
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH
Q 005977 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
+... ....+|++|+|+|+.+... ...+...+...+.... ....|+|||+||+|+..... ...+
T Consensus 225 ~~~~-----~~~~ad~vilV~D~~~~~s--~~~~~~~~~~~~~~~~------~~~~piilV~NK~Dl~~~~~----~~~i 287 (329)
T 3o47_A 225 LWRH-----YFQNTQGLIFVVDSNDRER--VNEAREELMRMLAEDE------LRDAVLLVFANKQDLPNAMN----AAEI 287 (329)
T ss_dssp SHHH-----HHTTEEEEEEEEETTCSSS--HHHHHHHHHHHHTCGG------GTTCEEEEEEECTTSTTCCC----HHHH
T ss_pred HHHH-----HhccCCEEEEEEECCchHH--HHHHHHHHHHHHhhhc------cCCCeEEEEEECccCCcccC----HHHH
Confidence 2221 3456899999999988543 2233334433333211 13578999999999986543 2222
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
...+....-......++.+||++|.|+++|++.|.+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 288 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp HHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 222111110001124889999999999999999987543
No 83
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.83 E-value=6.4e-09 Score=95.83 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.... .....+..|. +..+
T Consensus 73 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 140 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMES--FAAT-ADFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNRA----DQWN 140 (168)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----CCTTSCEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hhcCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCcEEEEEECccccccCccCHHHHHHHH----HHcC
Confidence 456899999999987421 1111 12222222211 11256899999999997543 3333344443 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 141 V----NYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEeCCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 84
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.82 E-value=1.6e-08 Score=95.62 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.... .....+..+. ...
T Consensus 90 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 157 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQS--FLNV-RNWISQLQMHA-----YSENPDIVLCGNKSDLEDQRAVKEEEARELA----EKY 157 (195)
T ss_dssp TTTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHS-----SSSSCCEEEEEECTTCGGGCCSCHHHHHHHH----HHH
T ss_pred HHcCCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCCEEEEEECcccccccccCHHHHHHHH----HHc
Confidence 4567999999999987321 1111 22223232210 00346899999999997643 3333344443 334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+ ++.+||+++.|+++|++.|.+.
T Consensus 158 ~~~----~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 158 GIP----YFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred CCC----EEEEECCCCCCHHHHHHHHHHH
Confidence 543 8999999999999999988754
No 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.82 E-value=4.5e-09 Score=99.43 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=54.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.++.. + ..+ ..++..+... .....|+++|+||+|+.... .....+..|. +..
T Consensus 77 ~~~~~d~~i~v~d~~~~~s-~-~~~-~~~~~~i~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~ 143 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKS-F-DNI-RNWIRNIEEH------ASADVEKMILGNKCDVNDKRQVSKERGEKLA----LDY 143 (183)
T ss_dssp TTTTCSEEEEEEETTCHHH-H-HHH-HHHHHHHHHH------SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH----HHH
T ss_pred HHhcCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCCEEEEEECccCCccCcCCHHHHHHHH----HHc
Confidence 5678999999999987321 1 111 1222333221 11356899999999998643 3334444443 334
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 144 ~~----~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 144 GI----KFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp TC----EEEECCC---CCHHHHHHHHHHH
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 38999999999999999988754
No 86
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=1e-08 Score=100.32 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... .......+..+... .....|+++|+||+|+.... ........|. +..
T Consensus 95 ~~~~~d~~i~v~D~~~~~s---~~~~~~~~~~i~~~------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~ 161 (201)
T 2ew1_A 95 YYRSANALILTYDITCEES---FRCLPEWLREIEQY------ASNKVITVLVGNKIDLAERREVSQQRAEEFS----EAQ 161 (201)
T ss_dssp GSTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHH------SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH----HHH
T ss_pred HHhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHHHHH----HHc
Confidence 4568999999999987421 11112222333321 11356899999999997533 2333344443 333
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+ ++.+||++|.|+++|++.|.+.
T Consensus 162 ~~~----~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 162 DMY----YLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp TCC----EEECCTTTCTTHHHHHHHHHHH
T ss_pred CCE----EEEEeCCCCCCHHHHHHHHHHH
Confidence 433 8999999999999999988754
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.82 E-value=1.6e-08 Score=96.15 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. + ...+...+...+... .....|+++|+||+||..... ...+..++.. ....
T Consensus 85 ~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~--~~~~ 153 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRE-R-ISVTREELYKMLAHE------DLRKAGLLIFANKQDVKECMT-VAEISQFLKL--TSIK 153 (181)
T ss_dssp GGTTCCEEEEEEETTCTT-T-HHHHHHHHHHHHTCG------GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTG--GGCC
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHHhCh------hhCCCeEEEEEECCCcccCCC-HHHHHHHhCc--cccc
Confidence 456899999999999853 1 222333333322210 014568999999999976432 2223332210 0000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
. .--.++.+||++|.|+++|++.|.+
T Consensus 154 ~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 D-HQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp S-SCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred C-CceEEEEccCCCCcCHHHHHHHHHh
Confidence 0 0115899999999999999999875
No 88
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.82 E-value=1e-08 Score=98.73 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+... .....|+++|+||+|+..... ....+..| .+...
T Consensus 96 ~~~~d~iilV~D~~~~~s---~~~~~~~~~~i~~~------~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~ 162 (192)
T 2il1_A 96 YRSAKGIILVYDITKKET---FDDLPKWMKMIDKY------ASEDAELLLVGNKLDCETDREITRQQGEKF----AQQIT 162 (192)
T ss_dssp HHHCSEEEEEEETTCHHH---HHTHHHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHTST
T ss_pred hcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHHH----HHhcC
Confidence 456899999999987421 11112222333322 113568999999999975432 22333333 33321
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 163 ---~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 163 ---GMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1248999999999999999988754
No 89
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=7.7e-09 Score=95.87 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=58.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ......++..+..... .....|+++|+||+|+.+... .......+ ....+
T Consensus 72 ~~~~~~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~----~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~ 140 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQS---LEELKPIYEQICEIKG----DVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWK 140 (172)
T ss_dssp HHHCSEEEEEEETTCHHH---HHTTHHHHHHHHHHHC-------CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHT
T ss_pred cccCCEEEEEEECcCHHH---HHHHHHHHHHHHHHhC----CCCCCCEEEEEEccccccccccCHHHHHHH----HHHhC
Confidence 356899999999987321 1111222233332110 002468999999999986433 22223333 23334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. .++.+||++|.|+++|++.|.+....
T Consensus 141 ~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 C----AFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred C----eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 3 38999999999999999999887553
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.81 E-value=2.1e-09 Score=103.71 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH-h-
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK-A- 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k-~- 364 (666)
....+|++++|+|+.+.. + .......+...++.. .....|+++|+||+|+... .....+..++..... .
T Consensus 87 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 157 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPE-R-FDEARVELDALFNIA------ELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGS 157 (190)
T ss_dssp GCTTCCEEEEEEETTCGG-G-HHHHHHHHHHHHTCG------GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC-
T ss_pred HHhcCCEEEEEEECCChH-H-HHHHHHHHHHHHcch------hhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCcccccc
Confidence 456799999999998843 1 112222222222110 0135689999999999763 333333333210000 0
Q ss_pred --CCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 365 --GGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 --~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.......++.+||++|.|++++++.|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 000012248999999999999999998753
No 91
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.81 E-value=2.6e-09 Score=104.48 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... .....|+++|+||+|+.... ....... .+....+
T Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~ 148 (218)
T 4djt_A 82 YIGASGAILFFDVTSRIT--CQNLA-RWVKEFQAV------VGNEAPIVVCANKIDIKNRQKISKKLVM----EVLKGKN 148 (218)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTHH-HHHHHHHHH------HCSSSCEEEEEECTTCC----CCHHHHH----HHTTTCC
T ss_pred hhcCCEEEEEEeCCCHHH--HHHHH-HHHHHHHHh------cCCCCCEEEEEECCCCccccccCHHHHH----HHHHHcC
Confidence 456899999999987421 11111 222333322 11346899999999998653 2222222 2223344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
. .++.+||++|.|+++|++.|.+.+.
T Consensus 149 ~----~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 149 Y----EYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp C----EEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred C----cEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3 4999999999999999999987543
No 92
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.81 E-value=1.2e-09 Score=124.76 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=53.6
Q ss_pred cccccCEEEEEEecCCCC---CC--CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFD---GM--FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRH 360 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~---gs--~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~ 360 (666)
.+..+|++|+|||+.+.. |. .+.. ...+..+... +.+++|+|+||+|++.... ....+...+..
T Consensus 275 ~~~~aD~alLVVDa~~g~~e~gi~~~~qt--~e~l~~~~~l--------gip~iIvviNKiDl~~~~~~~~~~i~~el~~ 344 (592)
T 3mca_A 275 GASSADFAVLVVDSSQNNFERGFLENGQT--REHAYLLRAL--------GISEIVVSVNKLDLMSWSEDRFQEIKNIVSD 344 (592)
T ss_dssp -------CCSEEEEEECCSSTTSCSCSSH--HHHHHHHHHS--------SCCCEEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccccccccchHH--HHHHHHHHHc--------CCCeEEEEEeccccccccHHHHHHHHHHHHH
Confidence 456799999999998732 11 2222 1222222221 3345999999999986321 11112233333
Q ss_pred HH-HhCCCCC-CCeEEEEecccCcchh--------------hHHHHHHhhcC
Q 005977 361 RA-KAGGAPK-LNGVYLVSARKDLGVR--------------NLLAFIKELAG 396 (666)
Q Consensus 361 ~~-k~~g~~~-~~~V~~VSAkkg~Gv~--------------eLl~~I~~~l~ 396 (666)
+. +..|+.. -..++++||++|.|+. .|++.|....+
T Consensus 345 ~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 345 FLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 33 3445421 1248999999999998 68887776654
No 93
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.81 E-value=2.1e-08 Score=94.93 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=58.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+... ...+.|+++|+||+|+.... ........| .+..
T Consensus 79 ~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 145 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRET---YNALTNWLTDARML------ASQNIVIILCGNKKDLDADREVTFLEASRF----AQEN 145 (186)
T ss_dssp TSTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HHhcCCEEEEEEECcCHHH---HHHHHHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4567999999999987321 11111222222221 11456899999999997532 332333333 3444
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 146 ~~----~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 146 EL----MFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp TC----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred CC----EEEEecCCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988654
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.81 E-value=1.2e-08 Score=96.04 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.... .....+..| .+..+
T Consensus 87 ~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 154 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMES--FAAT-ADFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNR----AEQWN 154 (187)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHH-----CCTTCCEEEEEECGGGGGGCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhc-----CCCCCCEEEEEECccccccCccCHHHHHHH----HHHcC
Confidence 456899999999987421 1111 12222222211 11256899999999997643 232333333 34455
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||+++.|+++|++.|.+.
T Consensus 155 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 155 V----NYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp C----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEeCCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 95
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.81 E-value=1.2e-08 Score=98.41 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=58.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+... ...+.. ++..+..... .......|+++|+||+|+.........+..|.+. ..+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s--~~~~~~-~~~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~ 148 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNT--FKTLDS-WRDEFLIQAS--PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---KNN 148 (207)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHTHHH-HHHHHHHHHC--CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---TTS
T ss_pred HHhCCcEEEEEEECCCHHH--HHHHHH-HHHHHHHhcc--cccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---cCC
Confidence 4567999999999987421 111112 2222222100 0000245899999999998655444444444321 333
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 149 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 149 I----PYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp C----CEEECBTTTTBSHHHHHHHHHHH
T ss_pred c----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998765
No 96
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.80 E-value=9.7e-09 Score=98.46 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+.... ....|+++|+||+|+.... ........|. +..+
T Consensus 91 ~~~~d~ii~v~d~~~~~s--~~~~-~~~l~~i~~~~------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 157 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRET--FNHL-TSWLEDARQHS------SSNMVIMLIGNKSDLESRRDVKREEGEAFA----REHG 157 (191)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHHS------CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred hccCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc------CCCCCEEEEEECcccCCccccCHHHHHHHH----HHcC
Confidence 457899999999987321 1111 12223333211 1356899999999997533 2333344443 3344
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||+++.|+++|++.|.+.
T Consensus 158 ~----~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 L----IFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988654
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.79 E-value=1e-08 Score=96.70 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=59.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-------------CChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+.... ...|+++|+||+|+.+.. .....
T Consensus 73 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPAS--FENVRAKWYPEVRHHC-------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHS-------TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hccCCcEEEEEEECCChhh--HHHHHHHHHHHHHHhC-------CCCCEEEEeEcccccccchhhhhhcccccccCCHHH
Confidence 4567999999999987321 1112212333343311 256899999999997642 11112
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.. .+.+..+ ...++.+||++|.|+++|++.|.+.+.
T Consensus 144 ~~----~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 144 GL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HH----HHHHhcC---CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 22 2334445 235899999999999999999987653
No 98
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.79 E-value=5.8e-08 Score=94.72 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+.. . ...+..++..... .......|+++|+||+|+.... .....+..| .+..
T Consensus 104 ~~~~~d~iilV~D~~~~~-----s-~~~~~~~l~~i~~--~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~ 171 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQ-----S-FLNVRNWMSQLQA--NAYCENPDIVLIGNKADLPDQREVNERQAREL----ADKY 171 (217)
T ss_dssp HHTTCCEEEEEEETTCHH-----H-HHHHHHHHHTCCC--CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred HhcCCCEEEEEEECcCHH-----H-HHHHHHHHHHHHH--hcCcCCCCEEEEEECCccccccccCHHHHHHH----HHHC
Confidence 345789999999998732 1 1222233332210 0000346899999999997543 223333443 3455
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+.+ ++.+||+++.|+++|++.|.+.
T Consensus 172 ~~~----~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 172 GIP----YFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp TCC----EEEEBTTTTBTHHHHHHHHHHH
T ss_pred CCc----EEEEECCCCCCHHHHHHHHHHH
Confidence 543 8999999999999999988754
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.79 E-value=1.6e-08 Score=97.30 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=49.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhc---CCCcEEEEEeCCCCCC-C-CCChHHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSK---KLPKLVLVGTKVDLLP-S-QVSPTRLDRWVRHR 361 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~---~~kpvILVlNKiDLLp-k-~~~~~~L~~wl~~~ 361 (666)
....+|++++|+|+.+.. .......++..+... .. ...|+++|+||+|+.. . ......+..|
T Consensus 93 ~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~------~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~---- 159 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSME---SFESCKAWFELLKSA------RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW---- 159 (208)
T ss_dssp TCCCCCEEEEEEETTCHH---HHHHHHHHHHHHHHH------CSCTTSCCEEEEEEECC-------CCCHHHHHHH----
T ss_pred HHhhCcEEEEEEECCCHH---HHHHHHHHHHHHHHh------hcccccCCcEEEEEECcccchhhccCCHHHHHHH----
Confidence 567899999999998742 111112222333221 11 2568999999999986 3 3333334444
Q ss_pred HHhCCCCCCCeEEEEeccc-CcchhhHHHHHHhh
Q 005977 362 AKAGGAPKLNGVYLVSARK-DLGVRNLLAFIKEL 394 (666)
Q Consensus 362 ~k~~g~~~~~~V~~VSAkk-g~Gv~eLl~~I~~~ 394 (666)
.+..+. .++.+||++ +.|+++|++.|.+.
T Consensus 160 ~~~~~~----~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 160 ATTNTL----DFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHTTC----EEEECCC-------CHHHHHHHHH
T ss_pred HHHcCC----EEEEeccCCCCcCHHHHHHHHHHH
Confidence 345553 389999999 99999999988764
No 100
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.78 E-value=2.1e-08 Score=95.84 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=55.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+.. .+..+.... .....|+++|+||+|+..... ....... +....+
T Consensus 91 ~~~~d~iilv~D~~~~~s-~-~~~~~-~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~ 158 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMAS-F-HSLPA-WIEECKQHL-----LANDIPRILVGNKCDLRSAIQVPTDLAQK----FADTHS 158 (189)
T ss_dssp HTTCCEEEEEEETTCHHH-H-HTHHH-HHHHHHHHC-----CCSCCCEEEEEECTTCGGGCCSCHHHHHH----HHHHTT
T ss_pred hcCCCEEEEEEECcCHHH-H-HHHHH-HHHHHHHhc-----CCCCCCEEEEEECccccccceeCHHHHHH----HHHHcC
Confidence 457899999999987321 0 11111 222222211 114578999999999975432 2232333 334555
Q ss_pred CCCCCeEEEEecccC---cchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKD---LGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg---~Gv~eLl~~I~~~l 395 (666)
.+ ++.+||+++ .|++++++.|.+.+
T Consensus 159 ~~----~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MP----LFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CC----EEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CE----EEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 43 899999999 89999998886543
No 101
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.78 E-value=1.1e-08 Score=99.16 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=57.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+... .....|+++|+||+|+.... ........| .+..
T Consensus 94 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 160 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRET--YNSL-AAWLTDARTL------ASPNIVVILCGNKKDLDPEREVTFLEASRF----AQEN 160 (200)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTH-HHHHHHHHHH------TCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEECcCHHH--HHHH-HHHHHHHHHh------cCCCCcEEEEEECCCcccccccCHHHHHHH----HHHc
Confidence 3457999999999987321 1111 1222222221 11356899999999997543 222333333 3444
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|+++|++.|.+.
T Consensus 161 ~~----~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 161 EL----MFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp TC----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 53 38999999999999999988754
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.77 E-value=1e-08 Score=94.86 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=57.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+... . ...|+++|+||+|+.... .....+..|. +..+
T Consensus 75 ~~~~d~~i~v~d~~~~~s--~~~~~-~~~~~i~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 140 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRES--FEAIS-SWREKVVAE------V-GDIPTALVQNKIDLLDDSCIKNEEAEGLA----KRLK 140 (168)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHH-HHHHHHHHH------H-CSCCEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred hcCCCEEEEEEECcCHHH--HHHHH-HHHHHHHHh------C-CCCCEEEEEECcccCcccccCHHHHHHHH----HHcC
Confidence 457899999999987321 01111 122222221 1 346899999999998643 2333344443 3445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||+++.|+++|++.|.+.
T Consensus 141 ~----~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 L----RFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp C----EEEECBTTTTBSSHHHHHHHHHH
T ss_pred C----eEEEEecCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999998764
No 103
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.77 E-value=8e-09 Score=100.68 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=59.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---------HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.........+ ...
T Consensus 98 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPAS--FENVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 4568999999999987321 111111233334331 1 356899999999998643100000 111
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+.+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 169 ~~~~~~~~~---~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 169 GLAMAKEIG---AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHhcC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122334444 3458999999999999999998764
No 104
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.76 E-value=2.9e-08 Score=95.41 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=57.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.... .....+..|. +..+
T Consensus 83 ~~~~~~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 150 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMES--FAAT-ADFREQILRVK-----EDENVPFLLVGNKSDLEDKRQVSVEEAKNRA----EQWN 150 (206)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHH-HHHHHHHHHHT-----TCSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH--HHHH-HHHHHHHHHhc-----CCCCCCEEEEEeccCccccccccHHHHHHHH----HHhC
Confidence 356899999999987421 1111 12222222211 11357899999999998643 3333444443 3334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 151 ~----~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 151 V----NYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp C----EEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 38999999999999999988754
No 105
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.76 E-value=2.4e-08 Score=107.47 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=57.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.++.... ......+.+.|..... ...|+|+|+||+|+++... ......+..+...++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~-~~~~~~~~~~L~~l~~------~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLL-IETLQSSFEILREIGV------SGKPILVTLNKIDKINGDL--YKKLDLVEKLSKELY 324 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHH-HHHHHHHHHHHHHHTC------CSCCEEEEEECGGGCCSCH--HHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEEEECCCCcchH-HHHHHHHHHHHHHhCc------CCCCEEEEEECCCCCCchH--HHHHHHHHHHHHHhc
Confidence 356799999999998742000 1111112233333211 3468999999999986541 111112212222221
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+ ...++++||+++.|+++|++.|.+.+
T Consensus 325 ~~-~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 SP-IFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp SC-EEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CC-CCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 10 12479999999999999999998653
No 106
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=5.1e-09 Score=114.07 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHH-HHHhhcCC
Q 005977 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA-FIKELAGP 397 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~-~I~~~l~~ 397 (666)
+|+++|+||+|+. . ...+..+.+.+ ...+ ..++++||+.+.|+.+|++ .|.+++|.
T Consensus 215 kP~i~v~NK~D~~-~---~~~l~~l~~~~-~~~~----~~vv~iSA~~e~~l~~L~~~~l~~~~p~ 271 (397)
T 1wxq_A 215 KPMVIAANKADAA-S---DEQIKRLVREE-EKRG----YIVIPTSAAAELTLRKAAKAGFIEYIPG 271 (397)
T ss_dssp SCEEEEEECGGGS-C---HHHHHHHHHHH-HHTT----CEEEEECHHHHHHHHSCSSSCCCCSCC-
T ss_pred CCEEEEEeCcccc-c---hHHHHHHHHHH-hhcC----CcEEEEeccchhhHHHHHhhhhhhhcCC
Confidence 6899999999987 2 12233333222 2223 2499999999999988765 45444443
No 107
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=2e-08 Score=99.76 Aligned_cols=91 Identities=21% Similarity=0.148 Sum_probs=55.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...++.+++|.|+.+... ......+...+.... .....|+|||+||+||... .........|. ...+
T Consensus 109 ~~~a~~~ilVydvt~~~s---f~~~~~~~~~l~~~~-----~~~~~piilVgNK~DL~~~r~v~~~e~~~~a----~~~~ 176 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRAS---FEKASELRIQLRRAR-----QTEDIPIILVGNKSDLVRCREVSVSEGRACA----VVFD 176 (211)
T ss_dssp CCCCSEEEEEEETTCHHH---HHHHHHHHHHHHTSG-----GGTTSCEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHh-----CCCCCcEEEEEEChHHhcCceEeHHHHHHHH----HHcC
Confidence 456889999999887321 111112222232210 0135689999999999753 22222222332 2334
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. .++.+||++|.|+++|++.|.+.
T Consensus 177 ~----~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 177 C----KFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp C----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 2 38899999999999999988754
No 108
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.74 E-value=6.8e-08 Score=92.26 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=58.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+... ...+...+...+... .....+.|+++|+||+|+..... ...+..++.. ..+.
T Consensus 87 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~----~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~--~~~~ 157 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLR--MVVAKEELDTLLNHP----DIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCL--ENIK 157 (190)
T ss_dssp GGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHST----TTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTG--GGCC
T ss_pred HHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhCh----hhccCCCeEEEEEeCcCcccCCC-HHHHHHHhCh--hhcc
Confidence 4578999999999987321 111222222222210 00002468999999999976432 2333333210 1111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. .-..++.+||++|.|+++|++.|.+.+
T Consensus 158 ~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 158 D-KPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp S-SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred C-CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 012489999999999999999998754
No 109
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.74 E-value=7.4e-09 Score=97.46 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-----------ChHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-----------SPTRLD 355 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-----------~~~~L~ 355 (666)
....+|++++|+|+.++.. ...+...++..+.... ...|+++|+||+|+..... ......
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKAS--YENVSKKWIPELKHYA-------PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-------TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-------CCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 4567999999999987321 1111112333343311 2468999999999975421 222233
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 356 RWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.|. +..+ ...++.+||++|.|+++|++.|.+.
T Consensus 147 ~~~----~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 147 ELK----KLIG---APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHH----HHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH----HHcC---CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 332 3334 2348999999999999999998764
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.74 E-value=4.2e-08 Score=95.14 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... + ..+...+ ..+.... .....|+|||+||+||.... ........| .+..+
T Consensus 94 ~~~~d~~ilv~d~~~~~s-~-~~~~~~~-~~i~~~~-----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----a~~~~ 161 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRS-F-SKVPETL-LRLRAGR-----PHHDLPVILVGNKSDLARSREVSLEEGRHL----AGTLS 161 (195)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTHHHHH-HHHHHHS-----TTSCCCEEEEEECTTCTTTCCSCHHHHHHH----HHHTT
T ss_pred hccCCEEEEEEECCCHHH-H-HHHHHHH-HHHHHhc-----CCCCCCEEEEeechhccccCCcCHHHHHHH----HHHhC
Confidence 346899999999987421 0 1122222 2222210 01256899999999998543 233333333 34445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. .++.+||++|.|+++|++.|.+.+
T Consensus 162 ~----~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 C----KHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp C----EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred C----EEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3 389999999999999999887643
No 111
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.74 E-value=1.3e-08 Score=97.10 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.++. + .......+...+... ...+.|+++|+||+|+..... ...+... .....-
T Consensus 86 ~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~-~~~~~~~---~~~~~~ 153 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRD-R-MGVAKHELYALLDED------ELRKSLLLIFANKQDLPDAAS-EAEIAEQ---LGVSSI 153 (189)
T ss_dssp SSTTCCEEEEEEETTCCT-T-HHHHHHHHHHHHTCS------TTTTCEEEEEEECTTSTTCCC-HHHHHHH---TTGGGC
T ss_pred HhhcCCEEEEEEeCCCHH-H-HHHHHHHHHHHHhhh------hcCCCeEEEEEECCCCcCCCC-HHHHHHH---hChhhc
Confidence 456899999999999854 1 222233333322210 013568999999999976543 1222221 110000
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
...--.++.+||+++.|+++|++.|.+.+
T Consensus 154 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 154 MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00011489999999999999999987654
No 112
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.74 E-value=1.9e-08 Score=94.83 Aligned_cols=96 Identities=21% Similarity=0.204 Sum_probs=57.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...++|++++|+|+.+.. + .......+...+... .....|+++|+||+|+..... ...+..++ ....
T Consensus 82 ~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~~~------~~~~~piilv~nK~Dl~~~~~-~~~i~~~~----~~~~ 148 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKD-R-MSTASKELHLMLQEE------ELQDAALLVFANKQDQPGALS-ASEVSKEL----NLVE 148 (183)
T ss_dssp TTTTEEEEEEEEETTCTT-T-HHHHHHHHHHHTTSS------TTSSCEEEEEEECTTSTTCCC-HHHHHHHT----TTTT
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHHcCh------hhCCCeEEEEEECCCCCCCCC-HHHHHHHh----Cccc
Confidence 456899999999998853 1 122222222221110 014568999999999976432 22233221 1111
Q ss_pred CC-CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 AP-KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~-~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.. ..-.++.+||++|.|+++|++.|.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 10 012589999999999999999987653
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.73 E-value=2.8e-08 Score=96.33 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=58.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-------------CChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
....+|++++|+|+.+... ...+...+...+.... ...|+++|+||+|+.+.. .....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDS--LENIPEKWTPEVKHFC-------PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHS-------TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-------CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 4568999999999987321 1112123333333311 256899999999998642 11112
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.. .+.+..+. ..++.+||++|.|+++|++.|.+.
T Consensus 164 ~~----~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 164 GR----DMANRISA---FGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HH----HHHHHTTC---SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HH----HHHHhCCC---cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 22344442 348999999999999999998764
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.73 E-value=1.8e-07 Score=91.09 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=55.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH----
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK---- 363 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k---- 363 (666)
...+|++++|+|+.++..+ .......+...+... .......|+++|+||+||..... ...+..+++....
T Consensus 76 ~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDS----MALKNSPSLLIACNKQDIAMAKS-AKLIQQQLEKELNTLRV 149 (214)
T ss_dssp GGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHHH----HTSTTCCEEEEEEECTTSTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCcCHH-HHHHHHHHHHHHhhh----hhcccCCCEEEEEECCCCCCccc-HHHHHHHHHHHHHHHhc
Confidence 4578999999999763210 011122222222211 01113569999999999987654 2223333332222
Q ss_pred ---------------h--CC-----CC--C---CCeEEEEecccC------cchhhHHHHHHhh
Q 005977 364 ---------------A--GG-----AP--K---LNGVYLVSARKD------LGVRNLLAFIKEL 394 (666)
Q Consensus 364 ---------------~--~g-----~~--~---~~~V~~VSAkkg------~Gv~eLl~~I~~~ 394 (666)
. .+ +. . ...++.+||++| .|+++|++.|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 00 00 0 123788999999 9999999998764
No 115
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.73 E-value=3.6e-08 Score=96.72 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=56.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-------------CChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-------------VSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-------------~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.... .....
T Consensus 102 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNS--FDNIFNRWYPEVNHF------C-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp ---CEEEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred HhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 4567999999999987321 111111223333321 1 356899999999998642 11122
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
... +.+..+ ...++.+||++|.|+++|++.|.+.
T Consensus 173 ~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 173 GQE----MARSVG---AVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHH----HHHHTT---CSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHH----HHHhcC---CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 222 334445 2358999999999999999988764
No 116
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=98.42 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=58.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
...++|++++|+|+.+... ...+...++..+... . ...|+++|+||+|+.+. ......
T Consensus 88 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSS--FQNVSEKWVPEIRCH------C-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 4567999999999987421 111111233333321 1 35689999999999753 222223
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...|. +..+ ...++.+||++|.|+++|++.|.+.
T Consensus 159 ~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 159 AKLLA----EEIK---AASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHHHH----HHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH----HhcC---CcEEEEEecCCCCCHHHHHHHHHHH
Confidence 33332 3334 2348999999999999999988654
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73 E-value=2.9e-08 Score=95.03 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=58.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.++.. ...+...++..+.... ...|+++|+||+|+... ......
T Consensus 86 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPAS--FQNVKEEWVPELKEYA-------PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHS-------TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-------CCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 4567999999999987321 1111112333333311 25689999999999864 222233
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...|. +..+. ..++.+||++|.|+++|++.|.+.
T Consensus 157 ~~~~~----~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 157 GQKLA----KEIGA---CCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHH----HHHTC---SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH----HHcCC---cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 33333 33342 248999999999999999988754
No 118
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.72 E-value=9.9e-09 Score=113.89 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcch-HH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~d-f~ 275 (666)
.|+..++||+||+|| |++|++.+....+++..+ ..++......+......+ ..|++. +.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~----------------gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP----------------GTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT----------------TCCHHHHHHEEEETTEEEEECC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----------------CeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 478888999999995 555999886533222111 111111111111111111 124432 11
Q ss_pred ----HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 276 ----RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 276 ----~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
....+.... ....+|+|++|+|+.++.. .....+++.+ ..+|+|+|+||+|+.+.....
T Consensus 287 ~~ve~~gi~~~~~--~~~~aD~vl~VvD~s~~~~----~~~~~i~~~l-----------~~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 287 DQVEKIGVERSRQ--AANTADLVLLTIDAATGWT----TGDQEIYEQV-----------KHRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp ------------C--CCCSCSEEEEEEETTTCSC----HHHHHHHHHH-----------TTSCEEEEEECTTSSCGGGST
T ss_pred hHHHHHHHHHHhh--hhhcCCEEEEEeccCCCCC----HHHHHHHHhc-----------cCCcEEEEEECCCCCcchhhH
Confidence 111122233 5678999999999988432 1223333332 235899999999998653311
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 352 TRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 352 ~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+..| . ....++.+||++|.|+++|++.|.+.+.
T Consensus 350 -~~~~~--------~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 350 -SLEYP--------E--NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp -TCCCC--------T--TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred -HHHHh--------c--cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 01111 0 1234899999999999999999987654
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.72 E-value=5.6e-09 Score=101.10 Aligned_cols=93 Identities=24% Similarity=0.249 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ...+ ..++..+.... .....|+++|+||+|+.+... .......| .+..
T Consensus 92 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~-----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 159 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHS--FQVI-ESLYQKLHEGH-----GKTRVPVVLVGNKADLSPEREVQAVEGKKL----AESW 159 (201)
T ss_dssp GTTTCCEEEEEEETTCHHH--HHHH-HHHHHHHHC----------CCCEEEEEECTTCGGGCCSCHHHHHHH----HHHH
T ss_pred HHhcCCEEEEEEeCCCHHH--HHHH-HHHHHHHHHhc-----CCCCCCEEEEEECccCccccccCHHHHHHH----HHHh
Confidence 4567999999999987321 1111 12222222110 113468999999999985443 22333333 2344
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. .++.+||++|.|+++|++.|.+.+
T Consensus 160 ~~----~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 160 GA----TFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp TC----EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CC----eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43 389999999999999999887653
No 120
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.72 E-value=2e-08 Score=94.21 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
....+|++++|+|+.+.. .... .+ .+..+.. ...|+++|+||+|+.... ...+..++ ...+
T Consensus 75 ~~~~~d~~i~v~d~~~~~--~~~~-~~-~l~~~~~---------~~~p~ilv~nK~Dl~~~~--~~~~~~~~----~~~~ 135 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGV--MPQT-VE-AINHAKA---------ANVPIIVAINKMDKPEAN--PDRVMQEL----MEYN 135 (178)
T ss_dssp SCCCCCEEEEEEETTCCC--CHHH-HH-HHHHHGG---------GSCCEEEEEETTTSSCSC--HHHHHHHH----TTTT
T ss_pred HHhhCCEEEEEEECCCCC--cHHH-HH-HHHHHHh---------CCCCEEEEEECccCCcCC--HHHHHHHH----HhcC
Confidence 457799999999998742 2221 11 1222211 346899999999997642 22233332 1111
Q ss_pred C--CCC---CeEEEEecccCcchhhHHHHHHhh
Q 005977 367 A--PKL---NGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~--~~~---~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
. ... ..++.+||++|.|+++|++.|.+.
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 136 LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 1 001 258999999999999999988754
No 121
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.72 E-value=5e-10 Score=119.74 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=75.4
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHH-hCCCCCCCeEEEEecccCcchhhHHHHHHhh-----------------
Q 005977 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAK-AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL----------------- 394 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k-~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~----------------- 394 (666)
++.++++||+|+.+... ...|..++.. ..+.. ...+++..+.+...+.+.+.+.
T Consensus 89 k~~~~~Lnk~dl~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 160 (357)
T 2e87_A 89 DTFHKAMAGIDWAIRII----RELEERYVERIRYSND----PNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDL 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTCCC----HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999987643 4566665543 32321 3345566666666655443221
Q ss_pred ---cCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 395 ---AGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 395 ---l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
......++++|.+|||||||+|+|++.. . .+...|++|++......... ..+.++||||+...
T Consensus 161 ~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 161 PVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227 (357)
T ss_dssp CCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSS
T ss_pred CccCCCCCEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeeceeEEEEEecCceEEEEeCCCcccc
Confidence 0234578999999999999999999764 2 22467888877643321122 25789999999764
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=9.1e-09 Score=97.72 Aligned_cols=87 Identities=28% Similarity=0.279 Sum_probs=56.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++. .. ..++..+.. ...|+++|+||+|+............|. +..+.+
T Consensus 84 ~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~---------~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~ 144 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-----RN-LYLTLQLME---------MGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVK 144 (188)
T ss_dssp HCCSEEEEEEEGGGHH-----HH-HHHHHHHHT---------TTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSC
T ss_pred cCCCEEEEEecchhHH-----HH-HHHHHHHHh---------cCCCEEEEEEhhhccccccchHHHHHHH----HHhCCC
Confidence 3589999999987621 11 222222222 3468999999999964322111234443 333433
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
++.+||+++.|+++|++.|.+.+...
T Consensus 145 ----~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 145 ----VVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ----EEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ----eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999998776544
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=1.8e-08 Score=98.19 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-------------ChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-------------SPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-------------~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+.... ...|+++|+||+|+..... ....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDS--LENIPEKWVPEVKHFC-------PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp GCTTCCEEEEEEETTCHHH--HHHHHHTHHHHHHHHS-------TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred hcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-------CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHH
Confidence 4567999999999987321 1122223334443311 2568999999999976421 1111
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
... +....+ ...++.+||++|.|+++|++.|.+.
T Consensus 164 ~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 164 GRA----MAVRIQ---AYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH----HHHhcC---CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222 223344 2358999999999999999998764
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.1e-08 Score=100.95 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=57.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+.... ....|++||+||+||.... ........| .+..
T Consensus 82 ~~~~~d~vilV~D~~~~~s---~~~~~~~l~~i~~~~------~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 148 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSS---YENCNHWLSELRENA------DDNVAVGLIGNKSDLAHLRAVPTEESKTF----AQEN 148 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHH---HHHHHHHHHHHHHHC------C--CEEEEEECCGGGGGGCCSCHHHHHHH----HHHT
T ss_pred HhccCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhC------CCCCeEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 4567999999999987421 111122223333211 1356899999999998533 232333443 3444
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+. .++.+||+++.|+++|++.|.+.+.
T Consensus 149 ~~----~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 149 QL----LFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp TC----EEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53 3889999999999999999877644
No 125
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.70 E-value=7.2e-08 Score=108.70 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.4
Q ss_pred eEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.|+++||++|.|+++|++.|.+++|.+
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCC
Confidence 478899999999999999999998765
No 126
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.70 E-value=5.5e-08 Score=108.21 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=59.5
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCC----CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGM----FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDL 344 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs----~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDL 344 (666)
|++. |.+.+.. .+..+|++|+|+|+.+.... .... ....+..+... ..+|+|+|+||+|+
T Consensus 119 PG~~~f~~~~~~------~~~~aD~~llVvDa~~g~~~~~~~~~~q-t~e~~~~~~~~--------~~~~iIvviNK~Dl 183 (483)
T 3p26_A 119 PGHRDFVPNAIM------GISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSL--------GIHNLIIAMNKMDN 183 (483)
T ss_dssp CCCGGGHHHHHH------HHTTCSEEEEEEECCC------CCCCHH-HHHHHHHHHHT--------TCCCEEEEEECGGG
T ss_pred CCcHHHHHHHHH------hhhhCCEEEEEEECCCCccccccchhhh-HHHHHHHHHHc--------CCCcEEEEEECcCc
Confidence 6653 5554444 45679999999999884210 1111 12222222221 33579999999999
Q ss_pred CCCCC-ChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhhH
Q 005977 345 LPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 345 Lpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eL 387 (666)
..... ..+.+..++..+.+..|+.. ...++++||++|.|+++|
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 86321 12233444444445555421 235899999999999864
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.70 E-value=1.2e-08 Score=104.47 Aligned_cols=85 Identities=32% Similarity=0.370 Sum_probs=55.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|++++|+|+.++. + ...+...+... ...|+++|+||+|+............ +.+.+|.+
T Consensus 80 ~~~d~vi~v~D~~~~~-----~-~~~~~~~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~----l~~~lg~~ 141 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-----R-NLFLTLELFEM--------EVKNIILVLNKFDLLKKKGAKIDIKK----MRKELGVP 141 (271)
T ss_dssp TCCSEEEEEEEGGGHH-----H-HHHHHHHHHHT--------TCCSEEEEEECHHHHHHHTCCCCHHH----HHHHHSSC
T ss_pred cCCcEEEEEecCCcch-----h-hHHHHHHHHhc--------CCCCEEEEEEChhcCcccccHHHHHH----HHHHcCCc
Confidence 5799999999998731 1 11222222221 22689999999998743221111222 23445654
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
++++||++|.|+++|++.|.+.+
T Consensus 142 ----~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 142 ----VIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ----EEECBGGGTBTHHHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.70 E-value=4.8e-08 Score=99.05 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=88.3
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccc---ccCcc----
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAEN---LIPDF---- 272 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~---~iP~~---- 272 (666)
+.+-.++||+||+|| |++|++.+.+..++...... .+..|...... ....++ .+|++
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~--------~T~~~~~~~~~-------~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATS--------VTRACTTGSRR-------WDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------CCSCEEEEEE-------ETTEEEEEEECCSCSSTT
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCC--------ccccEEEEEEE-------ECCcEEEEEECCCCCCCC
Confidence 346678899999995 55599999987655443321 23333332211 111111 23653
Q ss_pred -----hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 273 -----DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 273 -----df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.+.+.+.+.+.. ....+|++|+|+|+..+. ..+..+++.+..... ... .+.|+|||.||+||...
T Consensus 85 ~~~~~~~~~~i~~~~~~--~~~~~d~il~V~d~~~~~-----~~~~~~~~~l~~~~~-~~~--~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLL--SAPGPHALLLVTQLGRFT-----AQDQQAVRQVRDMFG-EDV--LKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHSTTSHHHHHHHHH--HTTCCSEEEEEEETTBCC-----HHHHHHHHHHHHHHC-GGG--GGGEEEEEECGGGGTTC
T ss_pred CCcHHHHHHHHHHHHHh--cCCCCCEEEEEEeCCCCC-----HHHHHHHHHHHHHhC-hhh--hccEEEEEEchHhcCCC
Confidence 222333332222 336899999999997532 234445555544211 000 13589999999999654
Q ss_pred CCChHHHH----HHHHHHHHhCCCCCCCeEEEEeccc-----CcchhhHHHHHHhhcC
Q 005977 348 QVSPTRLD----RWVRHRAKAGGAPKLNGVYLVSARK-----DLGVRNLLAFIKELAG 396 (666)
Q Consensus 348 ~~~~~~L~----~wl~~~~k~~g~~~~~~V~~VSAkk-----g~Gv~eLl~~I~~~l~ 396 (666)
.. ...+. ..++.+.+..|.+ ++++++.. +.|+++|++.|.++++
T Consensus 155 ~~-~~~l~~~~~~~l~~l~~~~g~~----~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 155 SL-HDYVSNTENRALRELVAECGGR----VCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp CH-HHHHHHCCCHHHHHHHHHTTTC----EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHhhcccHHHHHHHHHcCCe----EEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 31 11111 1123344555532 55555433 6899999999988765
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.69 E-value=7.5e-08 Score=104.60 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=66.4
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++. |.+.+.. ....+|++++|+|+.+.. +.+ +..+. +..+... ..+|+|+|+||+|+++..
T Consensus 83 PGh~~~~~~~~~------~~~~~D~~ilVvda~~~~-~~~-qt~~~-~~~~~~~--------~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 83 PGHEVLMATMLS------GAALMDGAILVVAANEPF-PQP-QTREH-FVALGII--------GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CCCGGGHHHHHH------HHTTCSEEEEEEETTSCS-SCH-HHHHH-HHHHHHH--------TCCCEEEEEECGGGSCHH
T ss_pred CCcHHHHHHHHH------HHhhCCEEEEEEECCCCC-CcH-HHHHH-HHHHHHc--------CCCCEEEEEECccccchH
Confidence 6654 5555544 346699999999999842 133 22222 2333322 335899999999998643
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 349 VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 349 ~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
...... ..++.+.+..+.. ...++++||++|.|+++|++.|.+.++.
T Consensus 146 ~~~~~~-~~i~~~l~~~~~~-~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 146 EALSQY-RQIKQFTKGTWAE-NVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHH-HHHHHHHTTSTTT-TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHH-HHHHHHHHhhCCC-CCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 211111 1222222222211 2249999999999999999999886543
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.69 E-value=8.7e-08 Score=102.33 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..+|.+++|+|+.++.+... .....++..+.... ...|+++|+||+|+..... +.... .+....+.+
T Consensus 245 ~~ad~illV~D~s~~~~~~~-~~~~~~~~~i~~~~-------~~~piilV~NK~Dl~~~~~----~~~~~-~~~~~~~~~ 311 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPL-EEQIHLFEEVHGEF-------KDLPFLVVINKIDVADEEN----IKRLE-KFVKEKGLN 311 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCH-HHHHHHHHHHHHHT-------TTSCEEEEECCTTTCCHHH----HHHHH-HHHHHTTCC
T ss_pred hcCCEEEEEEeCCccccCCH-HHHHHHHHHHHHhc-------CCCCEEEEEECcccCChHH----HHHHH-HHHHhcCCC
Confidence 46899999999987643222 22233334343311 1468999999999975432 22222 222334433
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
++.+||++|.|+++|++.|.+.+
T Consensus 312 ----~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 312 ----PIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ----CEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----eEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999997654
No 131
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.69 E-value=3e-08 Score=97.59 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=60.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC-------------CCCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP-------------SQVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp-------------k~~~~~~ 353 (666)
....+|++++|+|+.+... + ..+...++..+... ....|++||+||+||.. +......
T Consensus 95 ~~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~~i~~~-------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPET-V-DSALKKWRTEILDY-------CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ 165 (214)
T ss_dssp GCTTCSEEEEEEETTCTHH-H-HHHHTHHHHHHHHH-------CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HcCCCeEEEEEEECcCHHH-H-HHHHHHHHHHHHHh-------CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHH
Confidence 4567999999999987421 1 11112333334332 13568999999999975 2333344
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcc-hhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLG-VRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~G-v~eLl~~I~~~ 394 (666)
...|. +..+ +..++.+||++|.| +++|++.|.+.
T Consensus 166 ~~~~~----~~~~---~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 166 GCAIA----KQLG---AEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcC---CCEEEEeccCCCcccHHHHHHHHHHH
Confidence 44443 3444 22489999999998 99999988764
No 132
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.69 E-value=5.7e-08 Score=108.29 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=85.8
Q ss_pred CCceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccc---cccCcch-HH
Q 005977 201 DGFTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAE---NLIPDFD-FD 275 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q---~~iP~~d-f~ 275 (666)
+-+..+++|.+|+|||+ +++|.+........+-.. ....+.+... .|..+...... +..|++. |.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~---e~~~GiTi~~-------~~~~~~~~~~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPE---SQKRGITIDI-------GFSAFKLENYRITLVDAPGHADLI 87 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccc---cccCccEEec-------ceEEEEECCEEEEEEECCChHHHH
Confidence 34566789999999655 599987761100000000 0001111111 11111101111 1237763 44
Q ss_pred HHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHH
Q 005977 276 RVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLD 355 (666)
Q Consensus 276 ~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~ 355 (666)
+.+.. ....+|++++|+|+.+ |..+.. .+. +..+.. .+.|+|+|+||+|+.+... ...+.
T Consensus 88 ~~~~~------~~~~aD~~ilVvda~~--g~~~qt-~e~-l~~~~~---------~~ip~IvviNK~Dl~~~~~-~~~~~ 147 (482)
T 1wb1_A 88 RAVVS------AADIIDLALIVVDAKE--GPKTQT-GEH-MLILDH---------FNIPIIVVITKSDNAGTEE-IKRTE 147 (482)
T ss_dssp HHHHH------HTTSCCEEEEEEETTT--CSCHHH-HHH-HHHHHH---------TTCCBCEEEECTTSSCHHH-HHHHH
T ss_pred HHHHH------HHhhCCEEEEEEecCC--CccHHH-HHH-HHHHHH---------cCCCEEEEEECCCcccchh-HHHHH
Confidence 44433 4567999999999987 333332 222 223332 2356799999999986321 11122
Q ss_pred HHHHHHHHhC-CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 356 RWVRHRAKAG-GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 356 ~wl~~~~k~~-g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
..++.+.+.. ++. ...++++||++|.|+++|++.|.+.
T Consensus 148 ~~l~~~l~~~~~~~-~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 148 MIMKSILQSTHNLK-NSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp HHHHHHHHHSSSGG-GCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccc-cceEEEEECcCCCCHHHHHHHHHHh
Confidence 2233333344 321 2348999999999999999999875
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=6.2e-08 Score=93.15 Aligned_cols=91 Identities=26% Similarity=0.235 Sum_probs=57.6
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.++.. + ..+ ..++..+.... .....|+++|+||+|+... .........+. +..+
T Consensus 96 ~~~~d~iilv~D~~~~~s-~-~~~-~~~~~~i~~~~-----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~ 163 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGS-F-EEV-LPLKNILDEIK-----KPKNVTLILVGNKADLDHSRQVSTEEGEKLA----TELA 163 (196)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHHH-----TTSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHHT
T ss_pred hccCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHhh-----CCCCCcEEEEEECcccccccccCHHHHHHHH----HHhC
Confidence 456899999999987431 1 111 12223232211 1135689999999999863 33333344443 3334
Q ss_pred CCCCCeEEEEecccCc-chhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDL-GVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~-Gv~eLl~~I~~~ 394 (666)
. .++.+||++|. |++++++.|.+.
T Consensus 164 ~----~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 164 C----AFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp S----EEEECCTTTCTTCHHHHHHHHHHH
T ss_pred C----eEEEECCCcCCcCHHHHHHHHHHH
Confidence 3 38999999999 999999988754
No 134
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.67 E-value=7.9e-08 Score=90.37 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=56.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC---CCCChHHHHHHHHHHHHhC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAG 365 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~ 365 (666)
.++|++++|+|+.++.. ......+.+++..... ......|+++|+||+|+.. .......+..|.+. ..
T Consensus 71 ~~~d~~ilv~D~~~~~s---~~~~~~~~~~i~~~~~---~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~---~~ 141 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENS---FQAVSRLHGQLSSLRG---EGRGGLALALVGTQDRISASSPRVVGDARARALXAD---MK 141 (178)
T ss_dssp HHCSEEEEEEETTCHHH---HHHHHHHHHHHHHHHC---SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH---HS
T ss_pred HhCCEEEEEEECcCHHH---HHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh---hc
Confidence 45899999999987431 1111222223332110 0013568999999999952 23333444444322 11
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
+. .++.+||++|.|++++++.|.+.
T Consensus 142 ~~----~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 142 RC----SYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp SE----EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CC----eEEEEeccccCCHHHHHHHHHHH
Confidence 22 38999999999999999988654
No 135
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.66 E-value=4.5e-08 Score=92.67 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=40.9
Q ss_pred CCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCC----CeEEEEecccCcchhhHHHHHHhhc
Q 005977 331 KLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKL----NGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 331 ~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~----~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
...|+++|+||+|+.... ...+..+. +.++.+ + ..++.+||++|.|+++|++.|.+.+
T Consensus 121 ~~~piilv~nK~Dl~~~~--~~~~~~~~----~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV--QEVINFLA----EKFEVP-LSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp TTCCEEEEEECGGGCSCH--HHHHHHHH----HHHTCC-GGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcH--HHHHHHHH----HHhhhh-hhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 356899999999998653 22234433 334432 2 2479999999999999999987653
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.65 E-value=4.3e-08 Score=94.78 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=54.6
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g~ 367 (666)
..+|.+++|.|+.+... + .....+...+.... .....|+++|.||+||.... ........| ....+.
T Consensus 79 ~~~~~~i~v~dv~~~~s-~--~~~~~~~~~l~~~~-----~~~~~piilV~NK~Dl~~~r~v~~~~~~~~----a~~~~~ 146 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRAS-F--EKASELRIQLRRAR-----QTEDIPIILVGNKSDLVRXREVSVSEGRAX----AVVFDX 146 (192)
T ss_dssp HHCSEEEEEEETTCHHH-H--HHHHHHHHHHHHHT-----TTSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTTC
T ss_pred ccCCEEEEEEECCCHHH-H--HHHHHHHHHHHHhh-----CCCCCeEEEEEechhhhccccccHHHHHHH----HHHhCC
Confidence 45789999999987421 1 11122223333211 01346899999999997532 221212222 233442
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||++|.|+++|++.|.+.
T Consensus 147 ----~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 147 ----KFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp ----EEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----ceEEeccccCCCHHHHHHHHHHH
Confidence 37899999999999999988754
No 137
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.64 E-value=5.4e-09 Score=102.73 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=57.1
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+.+... ...+. .++..+... . .+.|+++|+||+|+....... ....+. +..+.
T Consensus 85 ~~~~~~~i~v~d~~~~~s--~~~~~-~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~-~~~~~~----~~~~~ 149 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVT--YKNVP-NWHRDLVRV------C-ENIPIVLCGNKVDIKDRKVKA-KSIVFH----RKKNL 149 (221)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHH-HHHHHHHHH------S-TTCCEEEEEECTTSSSCSSCG-GGCCHH----HHHTC
T ss_pred HhcCCEEEEEEECCCHHH--HHHHH-HHHHHHHHh------C-CCCCEEEEEECCccccccccH-HHHHHH----HHcCC
Confidence 456899999999987321 11111 222223221 1 356899999999998655432 222232 22343
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.++.+||++|.|+++|++.|.+.+
T Consensus 150 ----~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 150 ----QYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ----EEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 389999999999999999987653
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.64 E-value=7e-08 Score=110.30 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=83.2
Q ss_pred cCcc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 269 IPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 269 iP~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.|++ +|...+.+ .+..+|.+++|+|+.+. ..+... ..+...+ . .+.|+|+|+||+|+...
T Consensus 78 TPGh~dF~~ev~~------~l~~aD~aILVVDa~~g--v~~qt~-~~~~~~~-~---------~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 78 TPGHVDFSYEVSR------SLAACEGALLVVDAGQG--VEAQTL-ANCYTAM-E---------MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp CCCCGGGHHHHHH------HHHHCSEEEEEEETTTC--CCTHHH-HHHHHHH-H---------TTCEEEEEEECTTSTTC
T ss_pred CCCchHHHHHHHH------HHHHCCEEEEEEECCCC--CCHHHH-HHHHHHH-H---------CCCCEEEeeeccCcccc
Confidence 3665 35555544 44568999999999884 333332 2222222 1 34689999999999764
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCC-------ccEEEEcc---CCCChhHHHHh
Q 005977 348 QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPR-------GNVWVIGA---QNAGKSTLINT 417 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~-------~~v~vvG~---~NvGKSTLIN~ 417 (666)
. . ....+.+...++.. ...++++||++|.|+++|++.|.+.++.. ...+++.. +++|+.++++-
T Consensus 139 ~--~---~~v~~ei~~~lg~~-~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV 212 (599)
T 3cb4_D 139 D--P---ERVAEEIEDIVGID-ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRI 212 (599)
T ss_dssp C--H---HHHHHHHHHHTCCC-CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEE
T ss_pred c--H---HHHHHHHHHHhCCC-cceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEE
Confidence 3 1 22222333444542 34589999999999999999998887642 23455555 78999988877
Q ss_pred hhcc
Q 005977 418 FAKK 421 (666)
Q Consensus 418 L~~~ 421 (666)
+-+.
T Consensus 213 ~sG~ 216 (599)
T 3cb4_D 213 KNGT 216 (599)
T ss_dssp EESC
T ss_pred EeCE
Confidence 6543
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.64 E-value=7.6e-09 Score=113.59 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=81.6
Q ss_pred ceeeeccCCCchHHHH-HHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccccCcch-HHH---H
Q 005977 203 FTPAGVGYGNITEELV-ERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLIPDFD-FDR---V 277 (666)
Q Consensus 203 ~~~a~vGrpNvg~tlL-n~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~iP~~d-f~~---~ 277 (666)
+-.+++|.+|+|||+| |++.+.+.+..+..+.+- ......... ....+.+. -+..|++. +.. .
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT-------~d~~~~~~~-~~~~~~l~----liDTpG~~d~~~l~~~ 102 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-------TDPVYKSME-LHPIGPVT----LVDTPGLDDVGELGRL 102 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC--------------------CCCCEEEEE-ETTTEEEE----EEECSSTTCCCTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCee-------eeeEEEEEE-ECCCCeEE----EEECcCCCcccchhHH
Confidence 4557799999996555 999998876655554430 010000000 00000110 01124432 110 0
Q ss_pred HHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH
Q 005977 278 IATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW 357 (666)
Q Consensus 278 L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w 357 (666)
..+.... ....+|++++|+|+ . .. .....++..+.. .+.|+|+|+||+|+...... ..
T Consensus 103 ~~~~~~~--~l~~aD~vllVvD~-~---~~--~~~~~~l~~l~~---------~~~piIvV~NK~Dl~~~~~~-----~~ 160 (423)
T 3qq5_A 103 RVEKARR--VFYRADCGILVTDS-A---PT--PYEDDVVNLFKE---------MEIPFVVVVNKIDVLGEKAE-----EL 160 (423)
T ss_dssp CHHHHHH--HHTSCSEEEEECSS-S---CC--HHHHHHHHHHHH---------TTCCEEEECCCCTTTTCCCT-----HH
T ss_pred HHHHHHH--HHhcCCEEEEEEeC-C---Ch--HHHHHHHHHHHh---------cCCCEEEEEeCcCCCCccHH-----HH
Confidence 0001111 34579999999998 2 12 223444555544 34689999999999876542 22
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+.+.+..+. .++.+||++|.|+++|++.|.+.++
T Consensus 161 ~~~l~~~~g~----~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 161 KGLYESRYEA----KVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp HHHSSCCTTC----CCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred HHHHHHHcCC----CEEEEECCCCCCHHHHHHHHHHhhh
Confidence 2222233443 3889999999999999999998774
No 140
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.63 E-value=1.5e-07 Score=88.03 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=57.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC--CChHHHHHHHHHHHHh
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ--VSPTRLDRWVRHRAKA 364 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~--~~~~~L~~wl~~~~k~ 364 (666)
....+|++++|+|+.+... ...+ ..++..+..... .......|+++|+||+|+.... .....+..|.+. .
T Consensus 78 ~~~~~d~~i~v~d~~~~~s--~~~~-~~~~~~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---~ 149 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASS--FENI-KSWRDEFLVHAN--VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---L 149 (182)
T ss_dssp CSTTCCEEEEEEETTCHHH--HHTH-HHHHHHHHHHHC--CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH---T
T ss_pred HhhcCCEEEEEEECCChHH--HHHH-HHHHHHHHHHhc--ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh---c
Confidence 4578999999999987421 0111 112222222100 0001346899999999996432 223334444221 2
Q ss_pred CCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 365 GGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+. .++.+||++|.|+++|++.|.+.
T Consensus 150 ~~~----~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 150 GDI----PLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp TSC----CEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCC----eEEEEecCCCCCHHHHHHHHHHH
Confidence 222 38999999999999999988754
No 141
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.62 E-value=4e-08 Score=93.89 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=55.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++++++|+|+.+...++ ..+..++..... .....|++||+||+|+................+.+..+.
T Consensus 77 ~~~~~~~i~v~d~~~~~~s~-----~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 77 MTQRALYLAVYDLSKGQAEV-----DAMKPWLFNIKA----RASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHHSEEEEEEEEGGGCHHHH-----HTHHHHHHHHHH----HCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred ccCCcEEEEEEeCCcchhHH-----HHHHHHHHHHHh----hCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 34678999999998732111 112222222110 002468999999999964321101112222222223343
Q ss_pred CCCCeEEEEecccCc-chhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDL-GVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~-Gv~eLl~~I~~~l 395 (666)
+....++.+||+++. |+++|++.|.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHH
Confidence 212248899999996 9999999887653
No 142
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.62 E-value=1.1e-07 Score=103.40 Aligned_cols=110 Identities=22% Similarity=0.183 Sum_probs=66.6
Q ss_pred cCcc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEeCCCCCC
Q 005977 269 IPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLP 346 (666)
Q Consensus 269 iP~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLp 346 (666)
.|++ +|.+.+.. ....+|++++|+|+.+. ..+. . ...+..+.. .+.| +|+|+||+|+..
T Consensus 82 tpG~~~f~~~~~~------~~~~aD~~ilVvda~~g--~~~q-t-~~~l~~~~~---------~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 82 CPGHADYIKNMIT------GAAQMDGAILVVSAADG--PMPQ-T-REHILLARQ---------VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CCCSGGGHHHHHH------HHTTCSSEEEEEETTTC--CCHH-H-HHHHHHHHH---------TTCCCEEEEEECGGGCC
T ss_pred CCChHHHHHHHHH------HHHHCCEEEEEEECCCC--CcHH-H-HHHHHHHHH---------cCCCEEEEEEECccccC
Confidence 3665 45555544 34569999999999883 3332 2 223333332 2345 889999999985
Q ss_pred CCCChHHHHHHHHHHHHhCCCC-CCCeEEEEecccCcc------------------hhhHHHHHHhhcCC
Q 005977 347 SQVSPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLG------------------VRNLLAFIKELAGP 397 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~G------------------v~eLl~~I~~~l~~ 397 (666)
.......+...++.+.+..++. ....++++||++|.| +.+|++.|.++++.
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2211111222333444555531 113499999999987 78888888877653
No 143
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.62 E-value=1.3e-08 Score=105.64 Aligned_cols=105 Identities=17% Similarity=0.059 Sum_probs=60.6
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHH
Q 005977 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDR 356 (666)
Q Consensus 277 ~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~ 356 (666)
.+...+.. .+..+|++++|+|+........ ....++..+.. .+.|+++|+||+|++..... +..
T Consensus 156 ~~~~~~~~--~~~~~d~iilvvd~~~~~~~~~--~~~~i~~~~~~---------~~~~~i~v~NK~Dl~~~~~~---~~~ 219 (315)
T 1jwy_B 156 QIRRMVMA--YIKKQNAIIVAVTPANTDLANS--DALQLAKEVDP---------EGKRTIGVITKLDLMDKGTD---AME 219 (315)
T ss_dssp HHHHHHHH--HHHSTTEEEEEEEESSSCSTTC--SHHHHHHHHCS---------SCSSEEEEEECTTSSCSSCC---CHH
T ss_pred HHHHHHHH--HHcCCCeEEEEEEecCcchhhh--HHHHHHHHhCC---------CCCcEEEEEcCcccCCcchH---HHH
Confidence 44444444 6678999999999743221111 11233343332 35689999999999865441 233
Q ss_pred HHHHHHHhCCCCCCCeEEEEeccc---CcchhhHHHHHHhhcCCC
Q 005977 357 WVRHRAKAGGAPKLNGVYLVSARK---DLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 357 wl~~~~k~~g~~~~~~V~~VSAkk---g~Gv~eLl~~I~~~l~~~ 398 (666)
+++.....++.. +..++.+||.+ +.|+.+|++.+.++++.+
T Consensus 220 ~~~~~~~~~~~~-~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 220 VLTGRVIPLTLG-FIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HHTTSSSCCTTC-EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred HHhCCCccCCCC-eEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 332110111111 23355566766 789999999988877643
No 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.60 E-value=5.9e-08 Score=92.39 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=57.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.+... ...+...+...+.... ...|+++|+||+|+... ......
T Consensus 75 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~i~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-------CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH
Confidence 4568999999999987321 1111122233333211 34689999999999742 222233
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecc-cCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAk-kg~Gv~eLl~~I~~~ 394 (666)
...|. +..+ ...++.+||+ ++.|+++|++.|.+.
T Consensus 146 ~~~~~----~~~~---~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 146 GANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHHH----HHHT---CSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcC---CcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 34443 3333 2248999998 689999999988754
No 145
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.59 E-value=2.7e-08 Score=96.82 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=58.9
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC---------ChHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV---------SPTRLDRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~---------~~~~L~~w 357 (666)
...++|++++|+|+.++.. ...+...++..+... . ...|++||+||+||..... .......|
T Consensus 77 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKAS--YENVLKKWMPELRRF------A-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh------C-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH
Confidence 4567999999999987421 111111233333321 1 2568999999999975421 22223333
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+.++ ...++.+||++|.|+++|++.|.+.+
T Consensus 148 ----~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 148 ----RKQIG---AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHcC---CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 33444 23489999999999999999887653
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.59 E-value=1.8e-09 Score=104.43 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=52.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAG 365 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~ 365 (666)
....+|++++|+|+.+... ......++..+... .....|+++|+||+|+.+... .......| ....
T Consensus 102 ~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 168 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQES---FNNVKQWLQEIDRY------ASENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADSL 168 (199)
T ss_dssp --CCCSEEEECC-CCCSHH---HHHHHHHHHHHHSC------C-CCSEEEEC-CCSSCC--CCCCSCC-CHH----HHTT
T ss_pred HhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHh------ccCCCCEEEEEECccCCccccCCHHHHHHH----HHHc
Confidence 4567999999999988421 11112222333221 113568999999999985432 11123333 2445
Q ss_pred CCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 366 GAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 366 g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+.+ ++.+||++|.|+++|++.|.+.+.
T Consensus 169 ~~~----~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 GIP----FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TCC----BCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCe----EEEEECCCCCCHHHHHHHHHHHHH
Confidence 543 788999999999999999987654
No 147
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.4e-08 Score=108.03 Aligned_cols=58 Identities=29% Similarity=0.296 Sum_probs=45.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
+|.+||.||||||||+|+|++.. . .++++|+||++.+.-...+ +..+.++||||+...
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~-~-----~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE-S-----EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC-C-----CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC-C-----cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 79999999999999999999754 2 3468999999976432223 347899999999854
No 148
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.58 E-value=3.8e-07 Score=87.35 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC---CCCChHHHHHHHHHHHHhCC
Q 005977 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP---SQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp---k~~~~~~L~~wl~~~~k~~g 366 (666)
.+|++++|+|+.+... ...+ ..++..+..... ....|++||+||+||.. .......+..|. +..+
T Consensus 85 ~~~~~i~v~d~~~~~s--~~~~-~~~~~~i~~~~~-----~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~~~ 152 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEIS--FQTV-YNYFLRLCSFRN-----ASEVPMVLVGTQDAISAANPRVIDDSRARKLS----TDLK 152 (184)
T ss_dssp HCSEEEEEEETTCHHH--HHHH-HHHHHHHHTTSC-----GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----HHTT
T ss_pred CCCEEEEEEECcCHHH--HHHH-HHHHHHHHHhcC-----CCCCCEEEEEECcccccccccccCHHHHHHHH----HHcC
Confidence 4889999999987321 1111 222333332110 02458999999999953 223333344443 4444
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...++.+||++|.|+++|++.|.+.
T Consensus 153 ---~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 153 ---RCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp ---TCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 2248999999999999999988654
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.99 E-value=6.5e-09 Score=100.74 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=56.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---------HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---------DRW 357 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---------~~w 357 (666)
...++|++++|+|+.+.... ..+...++..+.... ...|+++|+||+|+.+.......+ ...
T Consensus 98 ~~~~~d~iilv~D~~~~~s~--~~~~~~~~~~l~~~~-------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASF--ENVRAKWYPEVRHHC-------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 45678999999999875421 122212333333210 246899999999998643211000 011
Q ss_pred HHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 358 VRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 358 l~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...+.+..+. ..++.+||++|.|+++|++.|.+
T Consensus 169 ~~~~~~~~~~---~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 169 GLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 1112222332 23789999999999999998865
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.57 E-value=3.9e-07 Score=99.10 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=54.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. ..+.. .+.+ ..+... ..+|+|+|+||+|+.+.......+.+ ++.+.+...
T Consensus 101 ~~~~~D~~ilVvda~~g~-~~~qt-~e~l-~~~~~l--------~~~~iivv~NK~Dl~~~~~~~~~~~~-i~~~l~~~~ 168 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPC-PQPQT-KEHL-MALEIL--------GIDKIIIVQNKIDLVDEKQAEENYEQ-IKEFVKGTI 168 (408)
T ss_dssp TCSCCSEEEEEEETTSCS-SCHHH-HHHH-HHHHHT--------TCCCEEEEEECTTSSCTTTTTTHHHH-HHHHHTTST
T ss_pred hHhhCCEEEEEEECCCCC-CCchh-HHHH-HHHHHc--------CCCeEEEEEEccCCCCHHHHHHHHHH-HHHHHhhcC
Confidence 556789999999999732 12322 2222 223221 33579999999999875432222222 222222221
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.. ...++++||++|.|+++|++.|.+.++
T Consensus 169 ~~-~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 169 AE-NAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TT-TCCEEEC------CHHHHHHHHHHHSC
T ss_pred CC-CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 11 224999999999999999999988654
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.56 E-value=7.6e-08 Score=94.29 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=57.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+.... ...|+++|+||+|+... ......
T Consensus 96 ~~~~~d~~ilv~D~~~~~s--~~~~~~~~~~~i~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-------CCCCEEEEEechhhccchhhhhhhcccccCCCCHHH
Confidence 4567999999999987321 0111122333333321 34689999999999742 222233
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecc-cCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSAR-KDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAk-kg~Gv~eLl~~I~~~ 394 (666)
...|. +..+ ...++.+||+ ++.|+++|++.|.+.
T Consensus 167 ~~~~~----~~~~---~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 167 GANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHcC---CCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 33443 3333 2248999999 689999999988754
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.56 E-value=3.5e-08 Score=99.85 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=86.5
Q ss_pred CceeeeccCCCchHHH-HHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceecccccccc---cCcch----
Q 005977 202 GFTPAGVGYGNITEEL-VERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENL---IPDFD---- 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~tl-Ln~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~---iP~~d---- 273 (666)
-+..++||.||+|||+ +|++.+.+..+....+. ..+..|... .+.....++. .|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~--------~~t~~~~~~-------~~~~~~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ--------TLTKTCSKS-------QGSWGNREIVIIDTPDMFSWKD 86 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC--------CCCCSCEEE-------EEEETTEEEEEEECCGGGGSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--------ceeeeeEEE-------EEEeCCCEEEEEECcCCCCCCC
Confidence 4566779999999555 59999877432211110 011222211 1111111111 25432
Q ss_pred ----HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEe-CCCCCCCC
Q 005977 274 ----FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGT-KVDLLPSQ 348 (666)
Q Consensus 274 ----f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlN-KiDLLpk~ 348 (666)
+.+.+.+.+.. ....+|++|+|+|+.++. .....++..+..... .....|+|+|+| |+|+....
T Consensus 87 ~~~~~~~~i~~~~~~--~~~~~d~il~V~d~~~~~-----~~~~~~~~~l~~~~~----~~~~~~~i~vv~nK~Dl~~~~ 155 (260)
T 2xtp_A 87 HCEALYKEVQRCYLL--SAPGPHVLLLVTQLGRYT-----SQDQQAAQRVKEIFG----EDAMGHTIVLFTHKEDLNGGS 155 (260)
T ss_dssp CCHHHHHHHHHHHHH--HTTCCSEEEEEEETTCCC-----HHHHHHHHHHHHHHC----GGGGGGEEEEEECGGGGTTCC
T ss_pred CHHHHHHHHHHHHHh--cCCCCcEEEEEEeCCCCC-----HHHHHHHHHHHHHhC----chhhccEEEEEEcccccCCcc
Confidence 11223333333 456799999999998632 223444454544210 001246788888 99998432
Q ss_pred CChHHHHHHHH--------HHHHhCCCCC--CCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 349 VSPTRLDRWVR--------HRAKAGGAPK--LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 349 ~~~~~L~~wl~--------~~~k~~g~~~--~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+..|+. ......+... +.. +++||+++.|+++|++.|.+.++
T Consensus 156 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 156 -----LMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp -----HHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHH
Confidence 233221 1333333210 222 78999999999999999987644
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.56 E-value=2.3e-07 Score=101.70 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=59.3
Q ss_pred cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 269 IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 269 iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.|++. |.+.+.. ....+|++++|+|+.+. ..+.. .+. +..+... +.+|+|+|+||+|+...
T Consensus 111 tpGh~~f~~~~~~------~~~~aD~~ilVvDa~~g--~~~qt-~~~-l~~~~~~--------~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 111 TPGHEQYTRNMAT------GASTCDLAIILVDARYG--VQTQT-RRH-SYIASLL--------GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp CCCSGGGHHHHHH------HHTTCSEEEEEEETTTC--SCHHH-HHH-HHHHHHT--------TCCEEEEEEECTTTTTS
T ss_pred CCChHHHHHHHHH------HHhhCCEEEEEEECCCC--CcHHH-HHH-HHHHHHc--------CCCeEEEEEEcCcCCcc
Confidence 36654 5555544 34679999999999983 33322 222 2222221 33469999999999863
Q ss_pred CC-ChHHHHHHHHHHHHhCCCC-CCCeEEEEecccCcchhh
Q 005977 348 QV-SPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLGVRN 386 (666)
Q Consensus 348 ~~-~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~Gv~e 386 (666)
.. ....+...++.+.+.+++. ....++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 21 1111233334444555521 123589999999999987
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.55 E-value=1.7e-07 Score=101.88 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=60.1
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+..+|++++|+|+.+.. ..+.. .+.+ ..+... ..+|+|+|+||+|+.........+++ ++.+.+...
T Consensus 103 ~~~~~D~~ilVvda~~g~-~~~qt-~e~l-~~~~~~--------~~~~iivviNK~Dl~~~~~~~~~~~~-i~~~l~~~~ 170 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPC-PRPQT-REHL-MALQII--------GQKNIIIAQNKIELVDKEKALENYRQ-IKEFIEGTV 170 (410)
T ss_dssp CGGGCSEEEEEEETTSCS-SCHHH-HHHH-HHHHHH--------TCCCEEEEEECGGGSCHHHHHHHHHH-HHHHHTTST
T ss_pred hhhhCCEEEEEEECCCCC-CChhH-HHHH-HHHHHc--------CCCcEEEEEECccCCCHHHHHHHHHH-HHHHHHhcC
Confidence 556789999999999731 12322 2222 223221 34579999999999864321111222 222222211
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.. ...++++||++|.|+++|++.|.+.++.
T Consensus 171 ~~-~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 171 AE-NAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TT-TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cC-CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 11 2349999999999999999999986653
No 155
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.54 E-value=1.4e-07 Score=91.07 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=57.8
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh---HHHHHH-HHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP---TRLDRW-VRHRAK 363 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~---~~L~~w-l~~~~k 363 (666)
..++|++++|+|+.+. ..+....+..++..... .....|++||+||+||++..... ..+... .+.+.+
T Consensus 93 ~~~~~~~i~v~d~~~~----~~~~~~~~~~~l~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD----YMEALTRLHITVSKAYK----VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTSC----CHHHHHHHHHHHHHHHH----HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCc----hHHHHHHHHHHHHHHHh----cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 4568999999999984 12333444455543210 11457999999999998643211 112111 222333
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.........++.+||++ .|++++++.|.+.
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 11000012488999999 9999999988753
No 156
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.54 E-value=2.7e-07 Score=92.02 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=59.2
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
..+++.+++|.|+.+... + ..+.. .+..+... .....|+|||.||+||... .........|. +..+
T Consensus 83 ~~~a~~~ilv~di~~~~S-f-~~i~~-~~~~i~~~------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a----~~~~ 149 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNS-F-QQTTK-WIDDVRTE------RGSDVIIMLVGNKTDLADKRQVSIEEGERKA----KELN 149 (216)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HTHHH-HHHHHHHH------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHH----HHHT
T ss_pred hccccEEEEEeecchhHH-H-HHHHH-HHHHHHHh------cCCCCeEEEEeeccchHhcCcccHHHHhhHH----HHhC
Confidence 457899999999987431 1 11122 22223222 1145789999999999754 33444444443 4445
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+ .+.+||++|.||+++++.|.+.+
T Consensus 150 ~~----~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 150 VM----FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp CE----EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred Ce----eEEEeCCCCcCHHHHHHHHHHHH
Confidence 32 78899999999999999987654
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.54 E-value=3e-07 Score=88.06 Aligned_cols=93 Identities=16% Similarity=0.055 Sum_probs=57.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g 366 (666)
...+|++++|+|+.+... ...+. .++..+..... ......|+++|+||+|+... .........|. +..+
T Consensus 89 ~~~~~~~ilv~d~~~~~s--~~~~~-~~~~~i~~~~~---~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~ 158 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQS--FDSSS-SYLELLALHAK---ETQRSIPALLLGNKLDMAQYRQVTKAEGVALA----GRFG 158 (187)
T ss_dssp HTTCSEEEEEEETTCHHH--HHHHH-HHHHHHHHHHH---HHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH----HHHT
T ss_pred HhhCCEEEEEEECCCHHH--HHHHH-HHHHHHHHHhh---ccCCCCCEEEEEECcchhhcCccCHHHHHHHH----HHcC
Confidence 346899999999987321 11111 22222322110 00135689999999999753 23333444443 3344
Q ss_pred CCCCCeEEEEec-ccCcchhhHHHHHHhh
Q 005977 367 APKLNGVYLVSA-RKDLGVRNLLAFIKEL 394 (666)
Q Consensus 367 ~~~~~~V~~VSA-kkg~Gv~eLl~~I~~~ 394 (666)
. .++.+|| ++|.|+++|++.|.+.
T Consensus 159 ~----~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 159 C----LFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp C----EEEECCSSSCSHHHHHHHHHHHHH
T ss_pred C----cEEEEeecCccccHHHHHHHHHHH
Confidence 3 3899999 8999999999988764
No 158
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.54 E-value=7e-08 Score=101.18 Aligned_cols=62 Identities=32% Similarity=0.394 Sum_probs=48.2
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~~~~ 464 (666)
.+.|.++|.+|||||||+|+|++..... ++..||||++.+...... ...+.++||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i-----~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSI-----ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSC-----CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc-----cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 4689999999999999999999865332 368899998866443223 2367899999998765
No 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.53 E-value=4.2e-07 Score=100.55 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=57.0
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCc------HHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFP------KRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV 342 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p------~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKi 342 (666)
|++. |.+.+.. ....+|++|+|+|+.+.. .+ .+..+ .+..+... ..+++|+|+||+
T Consensus 93 PGh~~f~~~~~~------~~~~aD~~ilVvda~~g~--~~~sf~~~~qt~~-~~~~~~~~--------~v~~iivviNK~ 155 (458)
T 1f60_A 93 PGHRDFIKNMIT------GTSQADCAILIIAGGVGE--FEAGISKDGQTRE-HALLAFTL--------GVRQLIVAVNKM 155 (458)
T ss_dssp CCCTTHHHHHHH------SSSCCSEEEEEEECSHHH--HHHHTCTTSHHHH-HHHHHHHT--------TCCEEEEEEECG
T ss_pred CCcHHHHHHHHh------hhhhCCEEEEEEeCCcCc--cccccCcchhHHH-HHHHHHHc--------CCCeEEEEEEcc
Confidence 7654 4444433 567899999999998621 11 01111 12222211 234599999999
Q ss_pred CCCCCCC-ChHHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhhHH
Q 005977 343 DLLPSQV-SPTRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 343 DLLpk~~-~~~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eLl 388 (666)
|+..... ....+...++.+.+..++.. ...++++||++|.|+.++.
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 9984221 11122233333444445310 1349999999999998764
No 160
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.51 E-value=1e-07 Score=107.14 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=54.8
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~ 367 (666)
..+|++++|+|+.++. . ...++..+.... .+.|+|+|+||+|+..... ....+.. .....+.
T Consensus 120 ~~~d~ii~V~D~s~~~-----~-~~~~~~~l~~~~-------~~~pvilV~NK~Dl~~~~~v~~~~~~~----~~~~~~~ 182 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDS-----N-KHYWLRHIEKYG-------GKSPVIVVMNKIDENPSYNIEQKKINE----RFPAIEN 182 (535)
T ss_dssp HSSEEEEEEECGGGGG-----G-HHHHHHHHHHHS-------SSCCEEEEECCTTTCTTCCCCHHHHHH----HCGGGTT
T ss_pred cCCcEEEEEEeCCCch-----h-HHHHHHHHHHhC-------CCCCEEEEEECCCcccccccCHHHHHH----HHHhcCC
Confidence 4589999999998742 1 233444444421 3468999999999986543 2222222 2233443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.++.+||++|.|+++|++.|.+.+..
T Consensus 183 ----~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 183 ----RFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ----CEEECCC-----CTTHHHHHHHHHTC
T ss_pred ----ceEEEecCcccCHHHHHHHHHHHHhc
Confidence 29999999999999999999887654
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.51 E-value=5.1e-07 Score=97.87 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=66.2
Q ss_pred cCcc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCc-EEEEEeCCCCCC
Q 005977 269 IPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPK-LVLVGTKVDLLP 346 (666)
Q Consensus 269 iP~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kp-vILVlNKiDLLp 346 (666)
.|++ +|...|.. ....+|++++|+|+.+ +..+.. .+. +..+.. .+.| +|+|+||+|+..
T Consensus 73 tpG~~~f~~~~~~------~~~~aD~~ilVvda~~--g~~~qt-~e~-l~~~~~---------~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 73 CPGHADYVKNMIT------GTAPLDGCILVVAAND--GPMPQT-REH-LLLARQ---------IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSHHHHHHHHHH------TSSCCSEEEEEEETTT--CSCHHH-HHH-HHHHHH---------TTCCCEEEEEECGGGCS
T ss_pred CCChHHHHHHHHh------hHhhCCEEEEEEECCC--CCCHHH-HHH-HHHHHH---------cCCCeEEEEEECcccCC
Confidence 3776 34444433 4567999999999998 334332 222 233332 2345 789999999985
Q ss_pred CCCChHHHHHHHHHHHHhCCCC-CCCeEEEEecccCcc----------hhhHHHHHHhhcCC
Q 005977 347 SQVSPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKDLG----------VRNLLAFIKELAGP 397 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg~G----------v~eLl~~I~~~l~~ 397 (666)
.......+..-++.+.+..++. ....++++||++|.+ +.+|++.|.++++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2211111222333444555531 113589999999774 88999999887654
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.50 E-value=1e-07 Score=97.79 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=45.6
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCC
Q 005977 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPK 369 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~ 369 (666)
.+|+++++++.... +.. ..+..+++.+. ...|+|+|+||+|+++..... .....+.......+.+
T Consensus 115 r~~~~l~~i~~~~~-~~~--~~d~~~l~~l~----------~~~pvi~V~nK~D~~~~~e~~-~~~~~i~~~l~~~~i~- 179 (274)
T 3t5d_A 115 RVQCCLYFIAPSGH-GLK--PLDIEFMKRLH----------EKVNIIPLIAKADTLTPEECQ-QFKKQIMKEIQEHKIK- 179 (274)
T ss_dssp CCCEEEEEECSCCS-SCC--HHHHHHHHHHT----------TTSCEEEEESSGGGSCHHHHH-HHHHHHHHHHHHTTCC-
T ss_pred ceeEEEEEecCCCC-CCC--HHHHHHHHHHh----------ccCCEEEEEeccCCCCHHHHH-HHHHHHHHHHHHcCCe-
Confidence 46788888876542 222 33444445443 246899999999998644311 1112222333344543
Q ss_pred CCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 370 LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 370 ~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
++.+||+++.|+++|.+.|.+.+|
T Consensus 180 ---v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 180 ---IYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp ---CCCC-----------CHHHHHTCS
T ss_pred ---EEcCCCCCChhHHHHHHHHhcCCC
Confidence 788999999999999999988654
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.50 E-value=6.7e-07 Score=102.15 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=68.1
Q ss_pred cCcc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 269 IPDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 269 iP~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.|++ +|...+.+ ++..+|.+|+|+|+.+. ..+... ..+.. +.. .+.|+|+|+||+|+...
T Consensus 80 TPGh~dF~~ev~r------~l~~aD~aILVVDa~~g--v~~qt~-~~~~~-a~~---------~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 80 TPGHVDFSYEVSR------ALAACEGALLLIDASQG--IEAQTV-ANFWK-AVE---------QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp CCCSGGGHHHHHH------HHHTCSEEEEEEETTTB--CCHHHH-HHHHH-HHH---------TTCEEEEEEECTTSTTC
T ss_pred CCCcHhHHHHHHH------HHHhCCEEEEEEECCCC--ccHHHH-HHHHH-HHH---------CCCCEEEEEeccCcccc
Confidence 3665 35555544 34568999999999984 333322 22222 111 34689999999999754
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 348 QVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
. .....+.+...++.. ...++++||++|.|+++|++.|.+.++.
T Consensus 141 ~-----~~~v~~el~~~lg~~-~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 141 D-----VDRVKKQIEEVLGLD-PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp C-----HHHHHHHHHHTSCCC-GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred C-----HHHHHHHHHHhhCCC-cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 3 223333444455542 3468999999999999999999887764
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.49 E-value=1.6e-07 Score=97.25 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=58.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-------------CCChHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------QVSPTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------~~~~~~ 353 (666)
....+|++++|+|+.+... ...+...++..+... . .+.|+++|+||+|+.+. ......
T Consensus 223 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPAS--FHHVRAKWYPEVRHH------C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp GCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH------C-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hccCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhh------C-CCCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 4568999999999987321 111111233333331 1 25689999999999753 122222
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 354 LDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 354 L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...| .+..+ +..++.+||++|.|+++|++.|.+.
T Consensus 294 ~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 294 GLAM----AKEIG---AVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHH----HHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH----HHHcC---CcEEEEecCCCCcCHHHHHHHHHHH
Confidence 2333 34444 2358999999999999999988764
No 165
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.48 E-value=1.2e-07 Score=99.28 Aligned_cols=61 Identities=36% Similarity=0.387 Sum_probs=46.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
+.|+++|.+|||||||+|+|++..... ++..|+||++.+...... +..+.++||||+..+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~i-----vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAP-----ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC-----CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee-----ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 478999999999999999999865432 367899998865422112 2367899999998754
No 166
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.47 E-value=1.2e-07 Score=99.31 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=57.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh---HHHHHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP---TRLDRWVRHRAK 363 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~---~~L~~wl~~~~k 363 (666)
...++|++++|+|+.+... .+....+..++..... ...+.|+++|+||+|+....... ......++.+.+
T Consensus 77 ~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l~~----~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~ 149 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQLRK----YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS 149 (307)
T ss_dssp HHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHHHH----HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCEEEEEEECCChhh---HHHHHHHHHHHHHHHH----hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH
Confidence 3467999999999988531 1112222233332210 01357999999999998632211 012233444556
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+|.+ ...++.+||++ .|+.+++..+..
T Consensus 150 ~~g~~-~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 150 EFGFP-NLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp TTTCC-SCEEEECCTTS-SHHHHHHHHHHH
T ss_pred HcCCC-CeEEEEeeecC-ChHHHHHHHHHH
Confidence 66632 13589999999 677776665554
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.47 E-value=4.4e-07 Score=87.86 Aligned_cols=93 Identities=17% Similarity=0.042 Sum_probs=57.7
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
..++.+++|+|+.+... ..+..+..++.. ...|+++|.||+|+++..... +....++.+....+.
T Consensus 107 ~~~~~~~~v~d~~~~~~----~~~~~~~~~~~~---------~~~~~~~v~nK~D~~s~~~~~-~~~~~~~~~~~~~~~- 171 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLK----DLDQQMIEWAVD---------SNIAVLVLLTKADKLASGARK-AQLNMVREAVLAFNG- 171 (210)
T ss_dssp TTEEEEEEEEETTSCCC----HHHHHHHHHHHH---------TTCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGGCS-
T ss_pred hcccEEEEEEECCCCCc----hhHHHHHHHHHH---------cCCCeEEEEecccCCCchhHH-HHHHHHHHHHHhcCC-
Confidence 45788999999987431 122334444433 345789999999998643211 111122222223221
Q ss_pred CCCeEEEEecccCcchhhHHHHHHhhcCC
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.-.++++||+++.|+++|++.|.++...
T Consensus 172 -~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 -DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp -CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred -CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 2347899999999999999999876543
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.46 E-value=6.6e-07 Score=89.41 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=79.4
Q ss_pred CceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecc-eecccccccccCcch------
Q 005977 202 GFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYG-QVKNEVAENLIPDFD------ 273 (666)
Q Consensus 202 G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~yg-kv~~~~~q~~iP~~d------ 273 (666)
-+..++||++|+|| +|+|++.+.+......... ..+..|...+.. ..+ .+. -+..|++.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~--------~~t~~~~~~~~~-~~~~~i~----liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK--------SITKKCEKRSSS-WKETELV----VVDTPGIFDTEVPN 95 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------CCSCEEEEEE-ETTEEEE----EEECCSCC-----C
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC--------ceeeeEEEEEEE-eCCceEE----EEECCCccCCCCCH
Confidence 46678899999995 5559999887532111100 112222211110 001 000 01135532
Q ss_pred --HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCCh
Q 005977 274 --FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSP 351 (666)
Q Consensus 274 --f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~ 351 (666)
+.+.+.+.+.. ....+|++|+|+|+.++.. . +...+..+..... .. ..+|+++|+||+|++......
T Consensus 96 ~~~~~~~~~~~~~--~~~~~~~~l~v~d~~~~~~----~-~~~~l~~~~~~~~-~~---~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 96 AETSKEIIRCILL--TSPGPHALLLVVPLGRYTE----E-EHKATEKILKMFG-ER---ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHHHHHH--TTTCCSEEEEEEETTCCSS----H-HHHHHHHHHHHHH-HH---HGGGEEEEEECGGGC------
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEEeeCCCCCH----H-HHHHHHHHHHHhh-hh---ccceEEEEEeCCccCCcccHH
Confidence 22334443333 4467899999999976432 1 1222232221110 00 124899999999998654321
Q ss_pred HHHH---HHHHHHHHhCCCCCCCeEEEEecc-----cCcchhhHHHHHHhhc
Q 005977 352 TRLD---RWVRHRAKAGGAPKLNGVYLVSAR-----KDLGVRNLLAFIKELA 395 (666)
Q Consensus 352 ~~L~---~wl~~~~k~~g~~~~~~V~~VSAk-----kg~Gv~eLl~~I~~~l 395 (666)
..+. ..++.+.+..+.. ++++++. +..++.+|++.|....
T Consensus 165 ~~i~~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 165 DYLREAPEDIQDLMDIFGDR----YCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp ------CHHHHHHHHHHSSS----EEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHcCCE----EEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 1111 1223333444432 5666655 3468889998887654
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.46 E-value=9.1e-07 Score=97.11 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=59.5
Q ss_pred Ccch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCc------HHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCC
Q 005977 270 PDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFP------KRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV 342 (666)
Q Consensus 270 P~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p------~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKi 342 (666)
|++. |...+.. ....+|++++|+|+.+ +++. .+. +..+..+... +.+++|+|+||+
T Consensus 92 pG~~~f~~~~~~------~~~~aD~~ilVvDa~~--gsfe~~~~~~~qt-~~~~~~~~~~--------~~~~iivviNK~ 154 (435)
T 1jny_A 92 PGHRDFVKNMIT------GASQADAAILVVSAKK--GEYEAGMSVEGQT-REHIILAKTM--------GLDQLIVAVNKM 154 (435)
T ss_dssp SSSTTHHHHHHH------TSSCCSEEEEEEECST--THHHHHHSTTCHH-HHHHHHHHHT--------TCTTCEEEEECG
T ss_pred CCcHHHHHHHHh------hhhhcCEEEEEEECCC--CccccccccchHH-HHHHHHHHHc--------CCCeEEEEEEcc
Confidence 6653 5544433 4567999999999998 4221 011 1112222221 235689999999
Q ss_pred CCCCCCCCh---HHHHHHHHHHHHhCCCCC-CCeEEEEecccCcchhhH
Q 005977 343 DLLPSQVSP---TRLDRWVRHRAKAGGAPK-LNGVYLVSARKDLGVRNL 387 (666)
Q Consensus 343 DLLpk~~~~---~~L~~wl~~~~k~~g~~~-~~~V~~VSAkkg~Gv~eL 387 (666)
|+....... ..+...++.+.+..++.. ...++++||++|.|+.++
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 998743222 223334444555555321 135899999999999744
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.41 E-value=2.5e-07 Score=108.01 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=57.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC-
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA- 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~- 367 (666)
..+|+|++|+|+........ ...++..+.. ...|+|+|+||+|++++.... ...+.. +....
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d---~l~ll~~L~~---------~g~pvIlVlNKiDlv~~~~~~---~~il~~--~~~~l~ 248 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSD---ALKIAKEVDP---------QGQRTIGVITKLDLMDEGTDA---RDVLEN--KLLPLR 248 (772)
T ss_dssp STTEEEEEEEETTSCSSSCH---HHHHHHHHCT---------TCSSEEEEEECTTSSCTTCCS---HHHHTT--CSSCCS
T ss_pred cCCcEEEEEEcCCCCcchhH---HHHHHHHHHh---------cCCCEEEEEeCcccCCcchhh---HHHHHH--Hhhhhh
Confidence 57899999999987543321 1134444432 346899999999999765432 122110 01100
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
..+..|+++||++|.|+++|++.|.+
T Consensus 249 lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 249 RGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCceEEecccccccchhHHHHHHH
Confidence 01456899999999999999999976
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.40 E-value=2.2e-07 Score=94.21 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=41.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
..+|++||.+|||||||+|+|++....... ....|||+.......... ..+.|+||||+.....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~----~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 85 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSR----LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV 85 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC-------------CCSCEEEEEEETTEEEEEEECCSCSSTTH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcccc----CCCCCccccEEEEEEEECCcEEEEEECCCCCCCCC
Confidence 358999999999999999999987644321 123357777654433333 3678999999976543
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.39 E-value=2.8e-07 Score=94.62 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=52.0
Q ss_pred cccC-EEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 289 ANAG-VVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aD-vVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..++ +|++|+|+.+.... .. ...++..+.. .+.|+++|+||+|+++.... ...+++........
T Consensus 160 ~~~~~~il~v~d~~~~~~~--~~-~~~~~~~~~~---------~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~~~ 224 (299)
T 2aka_B 160 TKENCLILAVSPANSDLAN--SD-ALKIAKEVDP---------QGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRR 224 (299)
T ss_dssp TSTTEEEEEEEESSSCGGG--CH-HHHHHHHHCT---------TCSSEEEEEECGGGSCTTCC---CHHHHTTCSSCCTT
T ss_pred cCCCeEEEEEecCCcchhh--hH-HHHHHHHhCC---------CCCeEEEEEEccccCCCCch---HHHHHhCCcCcCCC
Confidence 3455 55589999863211 11 1123333321 34689999999999865431 12222210001100
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.+..++.+||++|.|+++|++.|.+.
T Consensus 225 -~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 225 -GYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp -CEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred -CcEEEECCChhhccccccHHHHHHHH
Confidence 12357889999999999999988653
No 173
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.37 E-value=4.2e-07 Score=92.95 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=45.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
..+|+++|.+|||||||+|+|++..... ++..+|+|.....+..... ..+.++||||+....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVS-----ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc-----ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 4589999999999999999999765332 3577888876654433222 268899999987543
No 174
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.37 E-value=3.9e-07 Score=86.36 Aligned_cols=61 Identities=34% Similarity=0.431 Sum_probs=45.2
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
+.+|+++|.+|||||||+|+|++.... .++..||||++.......++. .+.++||||+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA-----IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS-----CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-----eeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 457999999999999999999975422 235789999876543333333 5789999998753
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.36 E-value=5.1e-07 Score=91.98 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=51.4
Q ss_pred hhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCC
Q 005977 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLH 462 (666)
Q Consensus 384 v~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~ 462 (666)
+.+++..+........+|+++|.+|||||||+|+|++..... ++..+|+|..........+. .+.|+||||+..
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-----VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSC-----CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcc-----cCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 334444444332334689999999999999999999865332 35778888776544333333 678999999976
Q ss_pred Cc
Q 005977 463 PH 464 (666)
Q Consensus 463 ~~ 464 (666)
..
T Consensus 97 ~~ 98 (262)
T 3def_A 97 AG 98 (262)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 176
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.34 E-value=5.9e-07 Score=92.50 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=47.2
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
+.+|+++|.+|||||||+|+|++.. .. ++.+||+|.+........ +..+.++||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~-----v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QR-----VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EE-----EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cc-----cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 3579999999999999999999764 22 358899998875543333 3467899999997654
No 177
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.34 E-value=1.2e-06 Score=94.55 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=61.1
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcE-EEEEe-CCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKL-VLVGT-KVDLLP 346 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpv-ILVlN-KiDLLp 346 (666)
|++ +|.+.|.. ....+|++++|+| .+ |..+.. . ..+..+.. .+.|. |+|+| |+|+ +
T Consensus 68 PGh~~f~~~~~~------~~~~aD~ailVvd-~~--g~~~qt-~-e~~~~~~~---------~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 68 HSYPKTLKSLIT------ALNISDIAVLCIP-PQ--GLDAHT-G-ECIIALDL---------LGFKHGIIALTRSDST-H 126 (370)
T ss_dssp TTTTTCHHHHHH------HHHTCSEEEEEEC-TT--CCCHHH-H-HHHHHHHH---------TTCCEEEEEECCGGGS-C
T ss_pred CChHHHHHHHHH------HHHHCCEEEEEEc-CC--CCcHHH-H-HHHHHHHH---------cCCCeEEEEEEeccCC-C
Confidence 665 35554444 3466999999999 54 544432 2 22233332 22355 99999 9999 4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCCeEEE--Eeccc---CcchhhHHHHHHhhcC
Q 005977 347 SQVSPTRLDRWVRHRAKAGGAPKLNGVYL--VSARK---DLGVRNLLAFIKELAG 396 (666)
Q Consensus 347 k~~~~~~L~~wl~~~~k~~g~~~~~~V~~--VSAkk---g~Gv~eLl~~I~~~l~ 396 (666)
... ...+..-++.+.+..+.. ...+++ +||++ +.|+++|++.|.++++
T Consensus 127 ~~~-~~~~~~~i~~~l~~~~~~-~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 127 MHA-IDELKAKLKVITSGTVLQ-DWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHH-HHHHHHHHHHHTTTSTTT-TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhcCCC-ceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 321 111111222222222221 235899 99999 9999999999987654
No 178
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.33 E-value=3.4e-07 Score=89.52 Aligned_cols=63 Identities=29% Similarity=0.304 Sum_probs=47.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeE--eCCceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGI--LPAKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~--l~~~~~liDTPGi~~~~ 464 (666)
..+|+|+|.+|||||||+|+|++.... ..++..||+|++....... -...+.|+||||+..+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRL----AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSS----SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcc----eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 358999999999999999999986521 1236789999886544321 12478999999987654
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.33 E-value=3.2e-06 Score=102.22 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=66.2
Q ss_pred cCcch-HHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 269 IPDFD-FDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 269 iP~~d-f~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.|++. |...|.. ....+|++|+|||+.+. ..+.. .+. +..+... +.+.+|+|+||+|+...
T Consensus 366 TPGHedF~~~mi~------gas~AD~aILVVDAtdG--v~~QT-rEh-L~ll~~l--------gIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 366 CPGHADYVKNMIT------GAAQMDGAILVVAATDG--PMPQT-REH-ILLGRQV--------GVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp CCCHHHHHHHHHH------TSCCCSEEEEEEETTTC--SCTTH-HHH-HHHHHHH--------TCSCEEEEEECCTTCCC
T ss_pred CCChHHHHHHHHH------HHhhCCEEEEEEcCCcc--CcHHH-HHH-HHHHHHc--------CCCeEEEEEeecccccc
Confidence 37754 4433332 56789999999999984 33332 222 2333321 22337899999999852
Q ss_pred CCChHHHHHHHHHHHHhCCCC-CCCeEEEEecccC--------cchhhHHHHHHhhcCC
Q 005977 348 QVSPTRLDRWVRHRAKAGGAP-KLNGVYLVSARKD--------LGVRNLLAFIKELAGP 397 (666)
Q Consensus 348 ~~~~~~L~~wl~~~~k~~g~~-~~~~V~~VSAkkg--------~Gv~eLl~~I~~~l~~ 397 (666)
......+..-++.+.+..++. ....++++||++| .|+.+|++.|.++++.
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 211111222233444555531 1234899999999 5789999999886653
No 180
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.31 E-value=6.9e-07 Score=91.27 Aligned_cols=59 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
+|+++|.+|||||||+|+|++.. . .++.+||+|.+.......++ ..+.++||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~-----~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-Q-----RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-E-----EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C-----CccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 68999999999999999999764 2 23588999988655443333 367899999997544
No 181
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.31 E-value=5.5e-07 Score=85.81 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=40.5
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCCcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHPHL 465 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~~~ 465 (666)
..+|+++|.+|||||||+|+|++..... ..+..||+|++...+. ++..+.++||||+.....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~t~~~~~~~--~~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLA----RTSSKPGKTQTLNFYI--INDELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEEEE--ETTTEEEEECCCBCCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc----ccCCCCCceeeEEEEE--ECCcEEEEECCCCCcccc
Confidence 4589999999999999999999764221 2357789888876554 466899999999876543
No 182
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.29 E-value=8.5e-08 Score=102.50 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=49.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...+|++++|+|+..... . ..+...+ -..|.++|+||+|+.+.......+..+...+ .....
T Consensus 185 ~~~~d~vl~V~d~~~~~~--~----~~i~~~i-----------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l-~~~~~ 246 (349)
T 2www_A 185 ADMVDMFVLLLPPAGGDE--L----QGIKRGI-----------IEMADLVAVTKSDGDLIVPARRIQAEYVSAL-KLLRK 246 (349)
T ss_dssp HTTCSEEEEEECCC-----------------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHH-TTCC-
T ss_pred HhhCCEEEEEEcCCcchh--H----HHhHHHH-----------HhcCCEEEEeeecCCCchhHHHHHHHHHHHH-HhcCc
Confidence 357899999999876321 1 1111111 1236799999999974321000112221111 11100
Q ss_pred ---CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 ---PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ---~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.....++++||++|.|+++|++.|.+++
T Consensus 247 ~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 247 RSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0023589999999999999999998764
No 183
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.28 E-value=2e-07 Score=103.97 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=46.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCC-CC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLL-HP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~-~~ 463 (666)
+.+|.++|.||||||||+|+|++.... .++..||||++.......++ ..+.|+||||+. ..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a-----~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA-----IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC-----CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC-----ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccc
Confidence 468999999999999999999976532 23689999998654332233 367899999997 44
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.28 E-value=3e-06 Score=98.40 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
++..+|.+|+|+|+.+.. ... ...++..+.. .+.|+++|+||+|+...
T Consensus 95 ~l~~aD~~llVvDa~~g~--~~~--~~~~~~~~~~---------~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGV--EPQ--TETVWRQATT---------YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHCSEEEEEEETTTBS--CHH--HHHHHHHHHH---------TTCCEEEEEECTTSTTC
T ss_pred HHHHCCEEEEEECCCCCC--cHH--HHHHHHHHHH---------cCCCEEEEEECCCcccc
Confidence 445699999999998732 222 2233343433 34689999999999864
No 185
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.5e-07 Score=99.99 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=69.0
Q ss_pred eeeccCCCch-HHHHHHHhhhhhhHHHHHHHHHHHhhhcCcceeecceecceecceeccccccccc---Ccch----HHH
Q 005977 205 PAGVGYGNIT-EELVERSKKKKLSKAERKKKAREAQKEKGEVTVCARCHSLRNYGQVKNEVAENLI---PDFD----FDR 276 (666)
Q Consensus 205 ~a~vGrpNvg-~tlLn~l~~~Kvs~~~rK~~a~~~~~~~~~~~~CqRC~rLr~ygkv~~~~~q~~i---P~~d----f~~ 276 (666)
.++||+|||| |||+|+|.+.+.. +... +-||+..+.|.+.....++.+ |++. ...
T Consensus 75 V~ivG~PNvGKSTL~n~Lt~~~~~-v~~~----------------pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~ 137 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLTGTESE-AAEY----------------EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR 137 (376)
T ss_dssp EEEECCCCHHHHHHHHHHHSBCCC-GGGT----------------CSSCCCEEEEEEEETTEEEEEEECGGGCCC-----
T ss_pred EEEECCCCCCHHHHHHHHhCCCCc-ccCC----------------CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh
Confidence 4679999999 5556999998833 2222 345777777777655444443 5442 222
Q ss_pred HHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCC
Q 005977 277 VIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDL 344 (666)
Q Consensus 277 ~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDL 344 (666)
-+.+++.. .+.++|+|++|||+++| ....+.+...|..... .. ..+|.++|+||+|.
T Consensus 138 ~~g~~~l~--~i~~ad~il~vvD~~~p-----~~~~~~i~~EL~~~~~--~l--~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 138 GRGKQVIA--VARTCNLLFIILDVNKP-----LHHKQIIEKELEGVGI--RL--NKTPPDILIKKKEK 194 (376)
T ss_dssp CHHHHHHH--HHHHCSEEEEEEETTSH-----HHHHHHHHHHHHHTTE--EE--TCCCCCEEEEECSS
T ss_pred HHHHHHHH--HHHhcCccccccccCcc-----HHHHHHHHHHHHHhhH--hh--ccCChhhhhhHhhh
Confidence 23344444 56789999999999873 3333444445554321 11 23567999999996
No 186
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.27 E-value=1.1e-06 Score=83.25 Aligned_cols=58 Identities=29% Similarity=0.357 Sum_probs=45.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++.... ..+..+|+|++..... .+..+.++||||+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIA-----FVSKTPGKTRSINFYL--VNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCS-----CCCSSCCCCCCEEEEE--ETTTEEEEECCCBSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccc-----cccCCCCCccCeEEEE--ECCcEEEEECCCCccc
Confidence 57999999999999999999976522 2357788888765543 4668999999997654
No 187
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.26 E-value=3.4e-07 Score=101.95 Aligned_cols=61 Identities=34% Similarity=0.375 Sum_probs=28.8
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC-ceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi~~~ 463 (666)
+.+|.++|.+|||||||+|+|++.... .++..||||++.......+++ .+.++||||+..+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a-----~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~ 294 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERA-----IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREA 294 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------CEEEEETTEEEEEEC-------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcc
Confidence 467999999999999999999976432 236889999997644333333 6789999999753
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.26 E-value=5e-07 Score=96.27 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=51.9
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...++|++|+|+..... ... ...++..+.. .+.|+++|+||+|++.+... +..+++.....+..
T Consensus 166 ~~~~iiL~v~~a~~~~~--~~~-~~~i~~~~~~---------~~~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l~~- 229 (353)
T 2x2e_A 166 KENCLILAVSPANSDLA--NSD-ALKVAKEVDP---------QGQRTIGVITKLDLMDEGTD---ARDVLENKLLPLRR- 229 (353)
T ss_dssp STTEEEEEEEETTSCGG--GCH-HHHHHHHHCT---------TCTTEEEEEECGGGSCTTCC---CHHHHTTCSSCCTT-
T ss_pred CCCeEEEEEecCCCccc--hhH-HHHHHHHhCc---------CCCceEEEeccccccCcchh---HHHHHhCCcccccC-
Confidence 34678888888865221 111 1123333221 34689999999999865432 12222110000000
Q ss_pred CCCeEEEEecccCcchhhHHHHHHh
Q 005977 369 KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.+..|+.+||+++.|+++|++.|.+
T Consensus 230 ~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 230 GYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeCCcccccccccHHHHHHH
Confidence 1335788999999999999998875
No 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.25 E-value=5e-07 Score=104.98 Aligned_cols=97 Identities=8% Similarity=0.019 Sum_probs=56.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC----CChHH-------HH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ----VSPTR-------LD 355 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~----~~~~~-------L~ 355 (666)
.+..+|+||+|+|+.+... ......+.+.+.. ...|+++|+||+|++... ..... +.
T Consensus 197 ~i~~aD~vL~Vvda~~~~s---~~e~~~l~~~l~~---------~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~ 264 (695)
T 2j69_A 197 YVNNCHAILFVMRASQPCT---LGERRYLENYIKG---------RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLR 264 (695)
T ss_dssp HHHSSSEEEEEEETTSTTC---HHHHHHHHHHTTT---------SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCccc---hhHHHHHHHHHHh---------hCCCEEEEEECcccccccccChhhHHHHHHHHHHHH
Confidence 4567999999999987431 1111222222221 245799999999998543 11111 11
Q ss_pred HHHHHHHHh-CC---C-CCCCeEEEEecc--------------cCcchhhHHHHHHhhc
Q 005977 356 RWVRHRAKA-GG---A-PKLNGVYLVSAR--------------KDLGVRNLLAFIKELA 395 (666)
Q Consensus 356 ~wl~~~~k~-~g---~-~~~~~V~~VSAk--------------kg~Gv~eLl~~I~~~l 395 (666)
..+...... .+ + .....+++|||+ ++.|+++|.+.|.+.+
T Consensus 265 ~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 265 QVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 111111111 11 0 002249999999 9999999999987754
No 190
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.25 E-value=5.3e-07 Score=101.73 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---H
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA---K 363 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~---k 363 (666)
....+|++++|+|+.+ +..+... ..+..+.. .+.|+|+|+||+|+....... +...+..+. .
T Consensus 72 ~~~~aD~vILVVDa~d--g~~~qt~--e~l~~~~~---------~~vPiIVViNKiDl~~~~~~~--v~~~l~~~~~~~e 136 (537)
T 3izy_P 72 GTQVTDIVILVVAADD--GVMKQTV--ESIQHAKD---------AHVPIVLAINKCDKAEADPEK--VKKELLAYDVVCE 136 (537)
T ss_dssp SSBSBSSCEEECBSSS--CCCHHHH--HHHHHHHT---------TTCCEEECCBSGGGTTTSCCS--SSSHHHHTTSCCC
T ss_pred HHccCCEEEEEEECCC--CccHHHH--HHHHHHHH---------cCCcEEEEEecccccccchHH--HHHHHHhhhhhHH
Confidence 5677999999999998 4454332 22233332 346899999999997533210 111111110 0
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.++ ....++++||++|.|+++|++.|..++
T Consensus 137 ~~~--~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 137 DYG--GDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CSS--SSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred hcC--CCceEEEEECCCCCCchhHHHHHHHhh
Confidence 111 112588999999999999999997653
No 191
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.23 E-value=5.5e-07 Score=102.63 Aligned_cols=72 Identities=26% Similarity=0.212 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCC----ceeEEEEEee----EeCCceEEEECC
Q 005977 387 LLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG----TTLGILRIGG----ILPAKAKLYDTP 458 (666)
Q Consensus 387 Ll~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG----TT~~~~~~~~----~l~~~~~liDTP 458 (666)
.++.|.....+...|+|+|.||||||||||+|++..... .++| +|+.+..+.. ..+..+.|+|||
T Consensus 27 al~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-------~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTp 99 (592)
T 1f5n_A 27 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-------SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTE 99 (592)
T ss_dssp HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-------CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEEC
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-------ccCCCCCCceeEEEEeecccccCCCceEEEecCC
Confidence 334444443333578899999999999999999865321 3344 3444432210 113468999999
Q ss_pred CCCCCcc
Q 005977 459 GLLHPHL 465 (666)
Q Consensus 459 Gi~~~~~ 465 (666)
|+..+..
T Consensus 100 Gi~~~~~ 106 (592)
T 1f5n_A 100 GLGDVEK 106 (592)
T ss_dssp CBCCGGG
T ss_pred CcCcccc
Confidence 9997654
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.23 E-value=2.4e-06 Score=93.62 Aligned_cols=91 Identities=23% Similarity=0.229 Sum_probs=55.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
...++.+++|+|+. ..+........+.+..+. ..+ ..+|.|||+||+|+... ..+..+.+ ..+..+.
T Consensus 233 ~era~~lL~vvDls----~~~~~~ls~g~~el~~la--~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~-~l~~~g~ 299 (416)
T 1udx_A 233 IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYD--PAL--LRRPSLVALNKVDLLEE----EAVKALAD-ALAREGL 299 (416)
T ss_dssp HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHC--HHH--HHSCEEEEEECCTTSCH----HHHHHHHH-HHHTTTS
T ss_pred HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHh--HHh--hcCCEEEEEECCChhhH----HHHHHHHH-HHHhcCC
Confidence 35689999999996 112221222222222210 000 12578999999999754 22333332 2333443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.++++||+++.|+++|++.|.+.+
T Consensus 300 ----~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 ----AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp ----CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----eEEEEECCCccCHHHHHHHHHHHH
Confidence 399999999999999999998764
No 193
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.22 E-value=4e-06 Score=92.94 Aligned_cols=92 Identities=18% Similarity=0.051 Sum_probs=50.8
Q ss_pred cccccCEEEEEEecCCCCC--C---CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHH---HHHH
Q 005977 287 GNANAGVVVMVVDCVDFDG--M---FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRL---DRWV 358 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~g--s---~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L---~~wl 358 (666)
....+|++|+|||+.+... + .+.. .+.+ ..+... +.+++|+|+||+|+.......+++ ..-+
T Consensus 141 ~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l-~~~~~~--------~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~ 210 (467)
T 1r5b_A 141 GASQADIGVLVISARRGEFEAGFERGGQT-REHA-VLARTQ--------GINHLVVVINKMDEPSVQWSEERYKECVDKL 210 (467)
T ss_dssp -TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHH-HHHHHT--------TCSSEEEEEECTTSTTCSSCHHHHHHHHHHH
T ss_pred hcccCCEEEEEEeCCcCccccccCCCCcH-HHHH-HHHHHc--------CCCEEEEEEECccCCCccccHHHHHHHHHHH
Confidence 4577999999999988420 0 0111 1121 222211 223499999999997533222222 2222
Q ss_pred HHHHHhC-CCC--CCCeEEEEecccCcchhhHH
Q 005977 359 RHRAKAG-GAP--KLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 359 ~~~~k~~-g~~--~~~~V~~VSAkkg~Gv~eLl 388 (666)
+.+.+.. |+. .-..++++||++|.|+.+++
T Consensus 211 ~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 211 SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 3333333 431 01248999999999998754
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.21 E-value=7.2e-06 Score=95.24 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.9
Q ss_pred eEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.|++.||.++.|++.|++.|.+++|..
T Consensus 257 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 283 (691)
T 1dar_A 257 PVFLGSALKNKGVQLLLDAVVDYLPSP 283 (691)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCT
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCCh
Confidence 388889999999999999999998865
No 195
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.21 E-value=1e-06 Score=88.05 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=39.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCC--CceeEEEEEeeEeC-CceEEEECCCCCCCcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIP--GTTLGILRIGGILP-AKAKLYDTPGLLHPHL 465 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~P--GTT~~~~~~~~~l~-~~~~liDTPGi~~~~~ 465 (666)
.+|+++|.+|||||||+|+|++..... +..| ++|++.......+. ..+.|+||||+.....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC------C-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 589999999999999999999865432 2334 67776654433343 3789999999986543
No 196
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.19 E-value=1.2e-06 Score=99.95 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=59.0
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCC-------------hHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVS-------------PTR 353 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~-------------~~~ 353 (666)
....+|.+|+|+|+.+ |..+... ..+..+.. .+.|+|+|+||+|+.+.... ...
T Consensus 90 ~~~~aD~aILVvDa~~--Gv~~qT~--e~l~~l~~---------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 90 GGALADLAILIVDINE--GFKPQTQ--EALNILRM---------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp SSBSCSEEEEEEETTT--CCCHHHH--HHHHHHHH---------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHhhCCEEEEEEECCC--CccHhHH--HHHHHHHH---------cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 5567999999999998 4444332 22233433 34689999999999853211 011
Q ss_pred ----HH----HHHHHHHHhCCC-----------CCCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 354 ----LD----RWVRHRAKAGGA-----------PKLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 354 ----L~----~wl~~~~k~~g~-----------~~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. .+...+. ..++ .....++++||++|.|+++|++.|..++
T Consensus 157 v~~~~~e~i~ei~~~L~-e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLH-EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 11 1111221 2222 0123589999999999999999987643
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.19 E-value=1e-06 Score=92.05 Aligned_cols=58 Identities=29% Similarity=0.266 Sum_probs=42.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
+.|.++|.+|||||||+|+|++.... .++..||||++.+...... +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~-----i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKIS-----ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEE-----ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc-----ccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 47999999999999999999986432 2357899998654321111 2357889999986
No 198
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.19 E-value=1.7e-06 Score=88.38 Aligned_cols=60 Identities=25% Similarity=0.236 Sum_probs=45.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
.+|+++|.+|||||||+|+|++.... ++.+||+|.+........ +..+.++||||.....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY------VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc------ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 47899999999999999999975421 357899998866544333 2367899999987543
No 199
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.18 E-value=1.3e-06 Score=89.66 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=37.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecc--cccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKL--TEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~l--t~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|+|||||+|+|++......... +....|+++.+.........+ .+.|+||||+...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4799999999999999999987654432110 001134445554443322222 6789999999543
No 200
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.16 E-value=1.4e-06 Score=90.03 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=44.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... .++.+||+|.+........+..+.++||||....
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~------~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQ------RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCC------CCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC------cccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 4789999999999999999997531 2368899998754432111347899999998754
No 201
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.16 E-value=2.4e-06 Score=87.41 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=45.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... . ++..||+|.+.......+. ..+.++||||+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~-----~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-H-----VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-E-----EEECTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-c-----cCCCCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence 4789999999999999999997642 2 3588999988755433333 35789999998753
No 202
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.15 E-value=8e-06 Score=92.02 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=32.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
.+..+|.+|+|+|+.+.. .+. ...++..+.. .+.|+++|+||+|+...
T Consensus 102 ~l~~aD~~IlVvDa~~g~--~~~--t~~~~~~~~~---------~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 102 TLTAVDCCLMVIDAAKGV--EDR--TRKLMEVTRL---------RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp GGGGCSEEEEEEETTTCS--CHH--HHHHHHHHTT---------TTCCEEEEEECTTSCCS
T ss_pred HHHHCCEEEEEEeCCccc--hHH--HHHHHHHHHH---------cCCCEEEEEcCcCCccc
Confidence 456799999999998842 221 2333333322 34689999999999754
No 203
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.13 E-value=1.9e-06 Score=81.46 Aligned_cols=55 Identities=33% Similarity=0.478 Sum_probs=43.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
+|+++|.+|||||||+|+|++.. ...+..||+|.+...+. +. .+.++||||+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK------VRRGKRPGVTRKIIEIE--WK-NHKIIDMPGFGFM 57 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC------CSSSSSTTCTTSCEEEE--ET-TEEEEECCCBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC------CccCCCCCccceeEEEe--cC-CEEEEECCCcccc
Confidence 68999999999999999999754 22356789888776654 33 7899999997643
No 204
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.13 E-value=1.8e-06 Score=87.15 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=43.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCC-ceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPG-TTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PG-TT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
..+|+|+|.+|||||||+|+|++...... +..|+ +|++......... ..+.|+||||+....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFES-----KLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCC-----CTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccc-----CCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 35899999999999999999997653322 34454 6776543322232 368899999987554
No 205
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.12 E-value=7.1e-06 Score=79.08 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=54.2
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~ 367 (666)
..++.+++|+|+.+... + ..+ ..++..+... .....|+++|+||+||..... ....... +....++
T Consensus 76 ~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~----l~~~~~~ 142 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLT-Y-ENV-ERWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTDEARA----FAEKNNL 142 (199)
T ss_dssp TTCSEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECTTCGGGCCSCHHHHHH----HHHHTTC
T ss_pred hcCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCeEEEEEECcccccccCcCHHHHHH----HHHHcCC
Confidence 46789999999876321 0 011 1122222221 113468999999999975322 2222233 3344443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||+++.|++++++.|.+.
T Consensus 143 ----~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 143 ----SFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 26779999999999999998764
No 206
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.12 E-value=5.8e-07 Score=99.72 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=39.8
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
+.+|.++|.+|||||||+|+|++.... .++..||||++.......++ ..+.++||||+...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a-----~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRA-----IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBS-----CCSCCTTCCHHHHHHEEEETTEEEEECC-------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcc-----cccCCCCeeEEEEEEEEEECCEEEEEEECCccccc
Confidence 457999999999999999999976432 23578999998642221122 25789999999653
No 207
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.11 E-value=2.3e-06 Score=80.06 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=37.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
.++.++|.+|||||||+|+|++... .++..||+|++.......+ +..+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 4689999999999999999987532 1246788887643222112 236789999998753
No 208
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.10 E-value=3.4e-06 Score=86.49 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.5
Q ss_pred ccEEEEccCCCChhHHHHhhhcccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
.+|+|+|.+|||||||+|+|++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 4799999999999999999998754
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.10 E-value=4.2e-06 Score=79.12 Aligned_cols=59 Identities=27% Similarity=0.282 Sum_probs=43.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|++... . ++..||+|.+.......+. ..+.++||||....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~-~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV-Y-----IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE-E-----EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-c-----ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4799999999999999999997532 1 2467898877544332232 35789999998754
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.09 E-value=3e-06 Score=90.44 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=52.0
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC-
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA- 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~- 367 (666)
..+|++++|+|+...+.. +.+.... ...|+++|+||+|+.+.... ......++......+.
T Consensus 191 ~~aD~vl~V~d~~~~~~~----------~~l~~~~-------~~~p~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~ 252 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQL----------QGIKKGV-------LELADIVVVNKADGEHHKEA-RLAARELSAAIRLIYPR 252 (355)
T ss_dssp TTCSEEEEEEESSTTCTT----------TTCCTTS-------GGGCSEEEEECCCGGGHHHH-HHHHHHHHHHHHHHSTT
T ss_pred HhCCEEEEEECCCCCccH----------HHHHHhH-------hhcCCEEEEECCCCcChhHH-HHHHHHHHHHHhhcccc
Confidence 579999999997653211 0111000 11378999999999753221 1111111111111110
Q ss_pred -CC-CCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 368 -PK-LNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 368 -~~-~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.. ...|+++||++|.|+++|++.|.++++
T Consensus 253 ~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 253 EALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 00 124999999999999999999987643
No 211
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.07 E-value=2.5e-06 Score=78.22 Aligned_cols=60 Identities=32% Similarity=0.360 Sum_probs=37.3
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCCc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHPH 464 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~~ 464 (666)
+++++|.+|||||||+|+|++..... .+..|++|.+......... ..+.++||||.....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAV-----VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC----------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeee-----ccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 68999999999999999999765322 2467888877654432232 367899999987643
No 212
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=1.7e-06 Score=94.24 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEE
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL 442 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~ 442 (666)
+|++||.||||||||+|+|++.. . .+++.||||++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~-----~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-V-----EIANYPFTTIEAN 38 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------CC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C-----cccCCCCcccCCc
Confidence 68999999999999999999764 2 2368899998743
No 213
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=1.8e-06 Score=92.93 Aligned_cols=59 Identities=31% Similarity=0.409 Sum_probs=40.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEE----EEee--------------EeCCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGIL----RIGG--------------ILPAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~----~~~~--------------~l~~~~~liDTPGi 460 (666)
.++++||.||||||||+|+|++.. . .+++.|+||++.. .++. ..+..+.++||||+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~-----~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-I-----EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL 76 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-C-----cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCC
Confidence 478999999999999999999754 2 2357888887742 2211 11246899999999
Q ss_pred CCC
Q 005977 461 LHP 463 (666)
Q Consensus 461 ~~~ 463 (666)
...
T Consensus 77 ~~~ 79 (363)
T 1jal_A 77 VAG 79 (363)
T ss_dssp CTT
T ss_pred ccc
Confidence 754
No 214
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.03 E-value=5.6e-06 Score=81.79 Aligned_cols=60 Identities=27% Similarity=0.269 Sum_probs=39.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~~ 463 (666)
..+|+|+|.+|||||||+|+|++.... ++..+++|++......... ..+.++||||....
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE------EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 458999999999999999999976422 2467888887654332222 36789999999653
No 215
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.02 E-value=3.3e-06 Score=81.65 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
.+..++++|.+|||||||+|+|++.... ..+++.+|+|+....+. +..+..++||||+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~----~~~~~~~G~~~~~~~~~--~~~~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSL----ARTSKTPGRTQLINLFE--VADGKRLVDLPGYGYA 85 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------------CCEEEEE--EETTEEEEECCCCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc----ccccCCCccceeeEEEE--ecCCEEEEECcCCccc
Confidence 4557999999999999999999975411 12356789887543333 2347889999998643
No 216
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.02 E-value=4.1e-06 Score=86.78 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.6
Q ss_pred ccEEEEccCCCChhHHHHhhhcccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
..|+|+|.+|||||||+|+|++...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3799999999999999999998764
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.00 E-value=2.8e-06 Score=92.40 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe------------------CCceEEEECC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------------------PAKAKLYDTP 458 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l------------------~~~~~liDTP 458 (666)
.+.++++||.||||||||+|+|++... .+++.|+||++...-...+ +..+.++|||
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIA 94 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECC
Confidence 456899999999999999999997542 3468899887643211111 3358999999
Q ss_pred CCCCCc
Q 005977 459 GLLHPH 464 (666)
Q Consensus 459 Gi~~~~ 464 (666)
|+....
T Consensus 95 Gl~~~a 100 (396)
T 2ohf_A 95 GLVKGA 100 (396)
T ss_dssp C-----
T ss_pred Cccccc
Confidence 998643
No 218
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.99 E-value=4e-06 Score=89.30 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.5
Q ss_pred ccEEEEccCCCChhHHHHhhhcccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
.+|+|+|.+|||||||+|+|++...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999998654
No 219
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=6.7e-06 Score=88.44 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=35.2
Q ss_pred EEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC-CceEEEECCCCCC
Q 005977 401 VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP-AKAKLYDTPGLLH 462 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~-~~~~liDTPGi~~ 462 (666)
|+++|.+|||||||+|+|++... .++..|++|++.......++ ..+.++||||+..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCc------cccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 88999999999999999997642 23577888887643332243 3578899999864
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.97 E-value=7.3e-06 Score=89.06 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC------------------CceEEEECC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP------------------AKAKLYDTP 458 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~------------------~~~~liDTP 458 (666)
.+..+.+||.+|||||||+|+|++.... .+++.|+||++...-...++ ..+.++|||
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-----~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-----NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT-----STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc-----cccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 3568999999999999999999975422 34689999877432111122 247899999
Q ss_pred CCCCCc
Q 005977 459 GLLHPH 464 (666)
Q Consensus 459 Gi~~~~ 464 (666)
|+....
T Consensus 94 Gl~~~~ 99 (392)
T 1ni3_A 94 GLTKGA 99 (392)
T ss_dssp GGCCCC
T ss_pred ccccCC
Confidence 998654
No 221
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.96 E-value=1.1e-05 Score=75.95 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=38.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.+.......++. .+.++||||...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-------CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 47999999999999999999965422 2455666554443322333 256799999543
No 222
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.95 E-value=9.9e-06 Score=75.48 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=38.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ....|++|.+.......+.. .+.++||||..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFS------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 57999999999999999999975432 13456666554433222333 46889999943
No 223
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.94 E-value=1.1e-05 Score=90.46 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=54.7
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRH---RAK 363 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~---~~k 363 (666)
....+|++++|+|+.+ |..+... +. +..+.. .+.|+|+|+||+|+...... ++...+.. +..
T Consensus 71 ~~~~aD~aILVVda~~--g~~~qT~-e~-l~~~~~---------~~vPiIVviNKiDl~~~~~~--~v~~~l~~~~~~~~ 135 (501)
T 1zo1_I 71 GAQATDIVVLVVAADD--GVMPQTI-EA-IQHAKA---------AQVPVVVAVNKIDKPEADPD--RVKNELSQYGILPE 135 (501)
T ss_dssp SSBSCSSEEEEEETTT--BSCTTTH-HH-HHHHHH---------TTCCEEEEEECSSSSTTCCC--CTTCCCCCCCCCTT
T ss_pred HHhhCCEEEEEeeccc--CccHHHH-HH-HHHHHh---------cCceEEEEEEeccccccCHH--HHHHHHHHhhhhHH
Confidence 5678999999999988 3344322 11 222222 34589999999999753210 01110000 000
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHh
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.++ ....++++||++|.|+++|++.|..
T Consensus 136 ~~~--~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 136 EWG--GESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence 111 0135899999999999999999864
No 224
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.93 E-value=1.1e-05 Score=93.67 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=35.7
Q ss_pred hhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCc
Q 005977 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGT 437 (666)
Q Consensus 384 v~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGT 437 (666)
+..|...+..+...+.+|+|+|.+|+|||||||+|++..... ++..|+|
T Consensus 55 l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~-----v~~~p~T 103 (695)
T 2j69_A 55 IEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLP-----SDVNPCT 103 (695)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSC-----CCCCTTT
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCCCCc
Confidence 345555555555567789999999999999999999875433 2456666
No 225
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.93 E-value=1.4e-05 Score=73.19 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=36.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.........+.. .+.++||||..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccC-------CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999975421 2334444433322222333 56799999954
No 226
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.92 E-value=1.5e-05 Score=72.95 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=36.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ..+.|+.+.......+.. .+.++||||..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-------KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-------CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-------cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999999654221 222333332222222332 36899999954
No 227
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.91 E-value=1.1e-05 Score=74.88 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=36.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++..... .+..+|+|.....+. ++. .+.++||||...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERD-----LHEQLGEDVYERTLT--VDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC----------CCCSSSSEEEEEEE--ETTEEEEEEEECCC----
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCcc-----ccCccccceeEEEEE--ECCEEEEEEEEecCCCCc
Confidence 479999999999999999999765332 234577765433332 332 467899999754
No 228
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.91 E-value=4.4e-05 Score=88.24 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.3
Q ss_pred eEEEEecccCcchhhHHHHHHhhcCC
Q 005977 372 GVYLVSARKDLGVRNLLAFIKELAGP 397 (666)
Q Consensus 372 ~V~~VSAkkg~Gv~eLl~~I~~~l~~ 397 (666)
.++++||+++.|++.|++.|.+++|.
T Consensus 249 pv~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 249 PVALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCC
Confidence 48889999999999999999888764
No 229
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.91 E-value=1.3e-05 Score=74.45 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=38.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 579999999999999999998653221 2345555554333222333 57899999954
No 230
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.90 E-value=6.5e-06 Score=75.92 Aligned_cols=58 Identities=29% Similarity=0.280 Sum_probs=32.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEE-EeeEeCCceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILR-IGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~-~~~~l~~~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ..+..+|+|..... +.. ..-.+.++||||...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG-----PEAEAAGHTYDRSIVVDG-EEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC---------------CEEEEEEEETT-EEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc-----CCCCccccceEEEEEECC-EEEEEEEEECCCCcc
Confidence 47999999999999999999865432 22466788775321 110 011467899999654
No 231
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.90 E-value=1.3e-05 Score=73.94 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=40.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...+.+|++.....+. +. ..+.++||||..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDP----NINPTIGASFMTKTVQ--YQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT----TCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC----CCCCceeEEEEEEEEE--ECCeEEEEEEEcCCCch
Confidence 479999999999999999999764221 1235566665544433 22 256799999974
No 232
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.90 E-value=1.5e-05 Score=74.30 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=35.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDT------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 478999999999999999998654221 1234434333222222333 5789999994
No 233
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.89 E-value=7.6e-06 Score=82.19 Aligned_cols=98 Identities=18% Similarity=0.080 Sum_probs=55.6
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHH-------
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVR------- 359 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~------- 359 (666)
...+ ++|++|+|+.... .+......+...+.... ....|+++|+||+|+.+... ...+..|++
T Consensus 135 ~~~~-~~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~------~~~~p~~iv~NK~D~~~~~~-~~~~~~~l~~~~~~~~ 204 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILK--KPNDYCFVRFFALLIDL------RLGATTIPALNKVDLLSEEE-KERHRKYFEDIDYLTA 204 (262)
T ss_dssp TSSS-CEEEEEECGGGCC--SHHHHHHHHHHHHHHHH------HHTSCEEEEECCGGGCCHHH-HHHHHHHHHCHHHHHH
T ss_pred HHhh-ceEEeccchhhhc--CHHHHHHHHHHHHHHhc------ccCCCeEEEEeccccccccc-HHHHHHHHhChHHHHH
Confidence 3456 9999999987632 22222111111111100 02358999999999975431 111233321
Q ss_pred HH-----------------HHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 360 HR-----------------AKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 360 ~~-----------------~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
.+ .+.++. ...++++||+++.|+++|++.|.+.++
T Consensus 205 ~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 205 RLKLDPSMQGLMAYKMCSMMTEVLP--PVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHSC--CCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhccccccchhHhHHHHHHHHhcC--cccceEEEecCcccHHHHHHHHHHHhc
Confidence 10 122221 124899999999999999999987643
No 234
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.89 E-value=1.7e-05 Score=74.16 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=38.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ....|.++.+.......++. .+.++||||..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLA-----GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-----CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 579999999999999999998764321 12345555554332212333 56889999954
No 235
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.88 E-value=1e-05 Score=85.98 Aligned_cols=86 Identities=13% Similarity=-0.068 Sum_probs=49.5
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---HhC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRA---KAG 365 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~---k~~ 365 (666)
..+|++++|+|+....... .+..... ..|.++|+||+|+..... +..++..+. ..+
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~------~l~~~~~-----------~~p~ivv~NK~Dl~~~~~----~~~~~~~l~~~l~~~ 226 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQ------GIKKGLM-----------EVADLIVINKDDGDNHTN----VAIARHMYESALHIL 226 (341)
T ss_dssp TTCSEEEEEECC------C------CCCHHHH-----------HHCSEEEECCCCTTCHHH----HHHHHHHHHHHHHHS
T ss_pred HhCCEEEEEEeCCccHHHH------HHHHhhh-----------cccCEEEEECCCCCChHH----HHHHHHHHHHHHHhc
Confidence 5699999999986532100 0000000 126799999999975321 222222221 122
Q ss_pred CC--C-CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 366 GA--P-KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 366 g~--~-~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
+. . ....++++||++|.|+++|++.|.+.+
T Consensus 227 ~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 21 0 023589999999999999999998753
No 236
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.87 E-value=1.9e-05 Score=73.51 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=38.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... +..++|+.........++. .+.++||||...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFV-------SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-------cccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 57999999999999999999975321 2445555544332222332 467899999654
No 237
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.87 E-value=3.7e-05 Score=74.73 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=39.7
Q ss_pred cccCEEEEEEecC-CCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHH---HHHHHHHHHHh
Q 005977 289 ANAGVVVMVVDCV-DFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTR---LDRWVRHRAKA 364 (666)
Q Consensus 289 ~~aDvVL~VVDa~-Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~---L~~wl~~~~k~ 364 (666)
..+|++++|+|+. +.. ++ ......+...+.... .......|+++|+||+|+......... +..-+..+...
T Consensus 81 ~~~~~~i~v~D~~~~~~-~~-~~~~~~~~~~~~~~~---~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPK-KL-TTTAEFLVDILSITE---SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp GGEEEEEEEEETTSCTT-CC-HHHHHHHHHHHHHHH---HHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChH-HH-HHHHHHHHHHHhccc---ccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3478999999998 433 22 233444444333210 001135789999999999876541111 11111222222
Q ss_pred CCCCCCCeEEEEecccCcc
Q 005977 365 GGAPKLNGVYLVSARKDLG 383 (666)
Q Consensus 365 ~g~~~~~~V~~VSAkkg~G 383 (666)
.+ ..++.+||++|.+
T Consensus 156 ~~----~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RK----KSLNEVERKINEE 170 (218)
T ss_dssp HH----HHHHC--------
T ss_pred Hh----ccccccccccccc
Confidence 22 1267789998765
No 238
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.86 E-value=9.5e-06 Score=77.12 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=39.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... .++.+|++...+.+. ...+.++||||..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~-----~~~t~g~~~~~~~~~---~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISH-----ITPTQGFNIKSVQSQ---GFKLNVWDIGGQR 71 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEE-----EEEETTEEEEEEEET---TEEEEEEECSSCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc-----ccCcCCeEEEEEEEC---CEEEEEEECCCCH
Confidence 4689999999999999999999764322 134466655444432 2367899999954
No 239
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.86 E-value=1.9e-05 Score=75.51 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=38.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++.... ...++|+.+.......++. .+.++||||..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 57999999999999999999975421 2344555443332222343 57899999954
No 240
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.86 E-value=1.5e-05 Score=73.22 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=37.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...+..|++.....+. ++. .+.++||||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE----NKEPTIGAAFLTQRVT--INEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT----TCCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEEEE--ECCEEEEEEEEECCCCh
Confidence 479999999999999999998654221 1123344444333332 232 57899999953
No 241
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.85 E-value=1.9e-05 Score=75.81 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=53.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC-ChHHHHHHHHHHHHhCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV-SPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~-~~~~L~~wl~~~~k~~g~ 367 (666)
..++.+++|+|+.+... + ..+ ..++..+... .....|+++|+||+||..... ...... .+....++
T Consensus 100 ~~~~~~i~v~d~~~~~s-~-~~~-~~~~~~~~~~------~~~~~~i~~v~nK~Dl~~~~~~~~~~a~----~l~~~~~~ 166 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLT-Y-ENV-ERWLKELRDH------ADSNIVIMLVGNKSDLRHLRAVPTDEAR----AFAEKNGL 166 (191)
T ss_dssp TTCCEEEEEEETTCHHH-H-HTH-HHHHHHHHHH------SCTTCEEEEEEECGGGGGGCCSCHHHHH----HHHHHTTC
T ss_pred hcCCEEEEEEECcCHHH-H-HHH-HHHHHHHHHh------cCCCCcEEEEEECcccccccccCHHHHH----HHHHHcCC
Confidence 45788999999876321 0 011 1122222221 113468999999999975322 222222 33344443
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||+++.|++++++.|.+.
T Consensus 167 ----~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 167 ----SFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp ----EEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHH
Confidence 26779999999999999998753
No 242
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.85 E-value=7.9e-05 Score=86.71 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.9
Q ss_pred eEEEEecccCcchhhHHHHHHhhcCCC
Q 005977 372 GVYLVSARKDLGVRNLLAFIKELAGPR 398 (666)
Q Consensus 372 ~V~~VSAkkg~Gv~eLl~~I~~~l~~~ 398 (666)
.|++.||+++.|++.|++.|.+++|.+
T Consensus 263 Pv~~gSa~~~~Gv~~LLd~i~~~lPsP 289 (704)
T 2rdo_7 263 LVTCGSAFKNKGVQAMLDAVIDYLPSP 289 (704)
T ss_pred EEEEeecccCccHHHHHHHHHHHCCCh
Confidence 388889999999999999999998865
No 243
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.85 E-value=2.2e-05 Score=73.52 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=38.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.........+.. .+.++||||..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFV-------EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-------CcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 58999999999999999999975421 2344455443332222333 46799999965
No 244
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.84 E-value=2.7e-05 Score=76.03 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=52.1
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC-CCChHHHHHHHHHHHHhCCCCC
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-QVSPTRLDRWVRHRAKAGGAPK 369 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-~~~~~~L~~wl~~~~k~~g~~~ 369 (666)
.+.+++|+|+..+. . . +...+... ..|+++|+||+|+.+. ......+..+++.. +.
T Consensus 130 ~~~~i~vvd~~~~~--~--~----~~~~~~~~---------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~~-- 186 (221)
T 2wsm_A 130 ENYRVVMVSVTEGD--D--V----VEKHPEIF---------RVADLIVINKVALAEAVGADVEKMKADAKLI----NP-- 186 (221)
T ss_dssp CSEEEEEEEGGGCT--T--H----HHHCHHHH---------HTCSEEEEECGGGHHHHTCCHHHHHHHHHHH----CT--
T ss_pred cCcEEEEEeCCCcc--h--h----hhhhhhhh---------hcCCEEEEecccCCcchhhHHHHHHHHHHHh----CC--
Confidence 56789999998742 1 1 11111111 1368999999999753 12333344444322 21
Q ss_pred CCeEEEEecccCcchhhHHHHHHhhc
Q 005977 370 LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 370 ~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
...++.+||++|.|+++|++.|.+.+
T Consensus 187 ~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 187 RAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 23589999999999999999998754
No 245
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.84 E-value=2e-05 Score=74.82 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=39.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ....|++|.+.......++. .+.++||||..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYT------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 57999999999999999999965422 13456655554333222333 46889999943
No 246
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.84 E-value=1.2e-05 Score=74.03 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=34.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNP------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 478999999999999999999654221 2344444433222222332 46789999954
No 247
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.83 E-value=6.9e-06 Score=76.66 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
...+|+++|.+|||||||+|+|++.... .+..|++|.+.......+ +..+.++||||...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 3468999999999999999999875422 234566554432211112 23578999999643
No 248
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.83 E-value=1.7e-05 Score=72.99 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=36.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTK------DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC------CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC------CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH
Confidence 578999999999999999998754221 1223323332222111222 57889999954
No 249
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.83 E-value=1.4e-05 Score=76.02 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=35.1
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~~ 463 (666)
..+|+++|.+|||||||+|+|++..... ...+..|++|.+. ....+.++||||....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAADY------DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC---------------CC------CCTTCSEEEETTCCBS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceeeee------cCCeEEEEECCCCchH
Confidence 4589999999999999999999764221 1113445555432 2346789999998643
No 250
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.83 E-value=2.4e-05 Score=71.84 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=36.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.........+.. .+.++||||...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-------EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-------CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-------CCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 47999999999999999999975321 1223333333222222222 467899999653
No 251
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.82 E-value=2.6e-05 Score=73.93 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=36.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.+.......... .+.++||||..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-------cccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 47999999999999999999965422 2334455443332222332 36789999954
No 252
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.81 E-value=3.9e-05 Score=77.78 Aligned_cols=89 Identities=19% Similarity=0.083 Sum_probs=55.0
Q ss_pred ccCEEEEEEecCCCC-CCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh-CCC
Q 005977 290 NAGVVVMVVDCVDFD-GMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKA-GGA 367 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~-gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~-~g~ 367 (666)
++|++++|+|+.+.. .++ ..+...+ ..+.... .....|++||+||+||.... .+. -.+.+.+. .+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~~l-~~i~~~~-----~~~~~piilV~NK~Dl~~~~----~v~-~~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLKFV-SNLYNQL-----AKTKKPIVVVLTKCDEGVER----YIR-DAHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHHHH-HHHHHHH-----HHTTCCEEEEEECGGGBCHH----HHH-HHHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhH-HHHHHHH-HHHHHHh-----ccCCCCEEEEEEcccccccH----HHH-HHHHHHHhcCCC
Confidence 689999999999851 122 2233322 2232210 01356899999999996432 122 22333333 243
Q ss_pred CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.++.+||++|.|+++|++.|.+.
T Consensus 230 ----~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 230 ----QVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----eEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998764
No 253
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.81 E-value=2.3e-05 Score=73.78 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=37.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKD------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 579999999999999999998654221 2334444443322222333 56899999943
No 254
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.81 E-value=2.9e-05 Score=70.72 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=36.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...++|+.+.......... .+.++||||...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-------DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-------cccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 47899999999999999999865422 1223343332222222222 357899999653
No 255
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.81 E-value=2.4e-05 Score=72.19 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=36.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFND------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCS------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCc------CCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999999654221 2334434333222212222 46788999954
No 256
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.80 E-value=1.4e-05 Score=83.62 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=43.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~ 461 (666)
+.+|+++|.+|||||||+|+|++..... ++..+|+|++.......+.+ .+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-----~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-----DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-----GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-----cccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 4579999999999999999998753221 24678988886544332322 56889999964
No 257
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.80 E-value=2e-05 Score=83.98 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=49.2
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
.+.++|+|++|+|+....... .....++..+.. ...|+|+|+||+|++++.... ...++.+...++
T Consensus 169 ~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~---------~~~~~i~V~nK~Dl~~~~~~~---~~~~~~~~~~~~ 234 (360)
T 3t34_A 169 YIEKPNCIILAISPANQDLAT--SDAIKISREVDP---------SGDRTFGVLTKIDLMDKGTDA---VEILEGRSFKLK 234 (360)
T ss_dssp HHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT---------TCTTEEEEEECGGGCCTTCCS---HHHHTTSSSCCS
T ss_pred HhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc---------cCCCEEEEEeCCccCCCcccH---HHHHcCcccccc
Confidence 567899999999876532211 111222222211 346899999999999764421 121111111222
Q ss_pred CCCCCeEEEEecccCcchhhHHHH
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAF 390 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~ 390 (666)
..++.+|+.++.+++++...
T Consensus 235 ----~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 235 ----YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp ----SCCEEECCCCHHHHHTTCCH
T ss_pred ----CCeEEEEECChHHhccCCCH
Confidence 23788999999888775433
No 258
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.80 E-value=2.5e-05 Score=74.06 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=43.6
Q ss_pred hHHHHHHhhc-CCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 386 NLLAFIKELA-GPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 386 eLl~~I~~~l-~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+++.+.-.. ....+|+++|.+|||||||+|+|+....... .+..|.+...+.+. ...+.++||||...
T Consensus 9 ~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 9 SLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-----VPTVGVNLETLQYK---NISFEVWDLGGQTG 78 (189)
T ss_dssp CHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-----CSSTTCCEEEEEET---TEEEEEEEECCSSS
T ss_pred HHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCc-----CCCCceEEEEEEEC---CEEEEEEECCCCHh
Confidence 3455443332 3467899999999999999999986543221 22334443333332 23678999999753
No 259
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.79 E-value=2e-05 Score=75.95 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=38.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+|+|.+|||||||+|+|++.... ....|.++.+.......++. .+.++||||..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFN------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCC------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 358999999999999999999965422 12345545443322222333 57899999954
No 260
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.79 E-value=2.3e-05 Score=74.03 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=38.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
...+|+++|.+|||||||+|+|++.. .. ...+..|++...+.+. ...+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~----~~~~t~~~~~~~~~~~---~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD----TISPTLGFNIKTLEHR---GFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS----SCCCCSSEEEEEEEET---TEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC----cccccCccceEEEEEC---CEEEEEEECCCCH
Confidence 45689999999999999999999765 11 1123334443333322 2367899999973
No 261
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.78 E-value=2.7e-05 Score=73.02 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=37.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
...+|+++|.+|||||||+|+|++.... ...+..|.+...+.+. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV-----TTKPTIGFNVETLSYK---NLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-----EECSSTTCCEEEEEET---TEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC-----ccCCcCccceEEEEEC---CEEEEEEECCCCHh
Confidence 4578999999999999999999865432 1234455554433332 23678999999864
No 262
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.78 E-value=2.9e-05 Score=72.13 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=36.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++...... .....|++.....+. ++. .+.++||||..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIE--VSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSS----CTTSCCCCEEEEEEE--ETTEEEEEEEEECTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceEEEEEEEE--ECCeEEEEEEEECCCCh
Confidence 5799999999999999999997643211 112334343333332 222 56889999943
No 263
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.78 E-value=2.5e-05 Score=74.86 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=38.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++..... ...|.++.+.......+.. .+.++||||..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 579999999999999999998754221 2334444444333222332 56889999943
No 264
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.77 E-value=3.5e-05 Score=72.29 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=37.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~~ 463 (666)
.+|+++|.+|||||||+|+|+..... +..++|+.........++. .+.++||||....
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFV-------DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-------CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh
Confidence 57999999999999999999955422 2333444333222212332 4579999997643
No 265
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.77 E-value=2.3e-05 Score=72.44 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=37.6
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
...+|+++|.+|||||||+|+|++..... ..+..|.+...+.+. ...+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYK---NLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEET---TEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEEC---CEEEEEEECCCCh
Confidence 34689999999999999999998654321 112233333222222 2367899999974
No 266
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.76 E-value=2.7e-05 Score=71.52 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=37.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+. +.. .+.++||||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEF----QESTIGAAFLTQTVC--LDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT----CCCCSSEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCccceEEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 4799999999999999999996542211 123345444333332 222 56899999954
No 267
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.76 E-value=8.1e-05 Score=70.60 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=20.2
Q ss_pred CCceeeeccCCCchHHHH-HHHhhhhh
Q 005977 201 DGFTPAGVGYGNITEELV-ERSKKKKL 226 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~tlL-n~l~~~Kv 226 (666)
..+..+++|.+|+|||+| |++.+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456778899999996555 99988763
No 268
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.74 E-value=2.7e-05 Score=73.61 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=40.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ..+.+|++...+.+. +..+.++||||..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIVIN---NTRFLMWDIGGQE 76 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEE-----EECCSSSSCEEEEET---TEEEEEEEESSSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCcCceeeEEEEEC---CEEEEEEECCCCH
Confidence 3589999999999999999999765421 235566655444432 2367899999974
No 269
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=4.8e-05 Score=72.09 Aligned_cols=58 Identities=26% Similarity=0.442 Sum_probs=38.5
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
...+|+++|.+|||||||+|+|++...... .+..|.+...+.+. +..+.++||||...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-----SPTIGSNVEEIVIN---NTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-----ECCSCSSCEEEEET---TEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC-----cCCCccceEEEEEC---CEEEEEEECCCCHh
Confidence 456899999999999999999996543321 23445444433332 23678999999854
No 270
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.74 E-value=0.00018 Score=81.27 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
|++ ||..-+.+ ++.-+|.+|+|||+.. |-.+.. +.++..+.+ .+.|.|+++||+|+...
T Consensus 108 PGHvDF~~Ev~r------aL~~~DgAvlVvda~~--GV~~qT--~~v~~~a~~---------~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYR------VLTAVDSALVVIDAAK--GVEAQT--RKLMDVCRM---------RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHH------HHHSCSEEEEEEETTT--BSCHHH--HHHHHHHHH---------TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHH------HHHhcCceEEEeecCC--Cccccc--HHHHHHHHH---------hCCceEEEEecccchhc
Confidence 765 56665555 3445899999999988 655543 344454444 34588999999998643
No 271
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.73 E-value=2.9e-05 Score=74.25 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~ 461 (666)
..+|+|+|.+|||||||+|+|++..... ...+.+|+|.....+. +. ..+.++||||..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDH----NISPTIGASFMTKTVP--CGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCT----TCCCCSSEEEEEEEEE--CSSSEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC----CcCCCcceeEEEEEEE--eCCEEEEEEEEcCCCch
Confidence 3589999999999999999998754221 2245677776554443 22 157889999954
No 272
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.73 E-value=8.1e-06 Score=92.41 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=33.3
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
.+..+|+|++|+|+.++. .. ..+..++..+.. ...|+++|+||+|+++..
T Consensus 185 ~l~~aD~il~VvDa~~~~-~~--~~~~~~l~~l~~---------~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 185 FAERVDLIILLFDAHKLE-IS--DEFSEAIGALRG---------HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp HHHHCSEEEEEEETTSCC-CC--HHHHHHHHHTTT---------CGGGEEEEEECGGGSCHH
T ss_pred HHHhCCEEEEEEeCCcCC-CC--HHHHHHHHHHHh---------cCCCEEEEEECCCccCHH
Confidence 456799999999998742 12 223334444432 235899999999998653
No 273
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.73 E-value=1.4e-05 Score=86.08 Aligned_cols=58 Identities=28% Similarity=0.488 Sum_probs=41.4
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE----EEEee------------------EeCCceEEEEC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI----LRIGG------------------ILPAKAKLYDT 457 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~----~~~~~------------------~l~~~~~liDT 457 (666)
++++||.||||||||+|+|++.. . .++..|+||++. ..++. ..+..+.++||
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~-----~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDt 76 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A-----LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDI 76 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T-----TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C-----cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEEC
Confidence 68999999999999999999753 1 235778877642 11110 12346899999
Q ss_pred CCCCCC
Q 005977 458 PGLLHP 463 (666)
Q Consensus 458 PGi~~~ 463 (666)
||+...
T Consensus 77 pGl~~~ 82 (368)
T 2dby_A 77 AGLVKG 82 (368)
T ss_dssp CSCCCC
T ss_pred CCcccc
Confidence 999864
No 274
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.72 E-value=3.4e-05 Score=73.83 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=34.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++...... .....|++.....+. ++. .+.++||||..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEA----CKSTVGVDFKIKTVE--LRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC------------CCTTEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcC----CCCccceeEEEEEEE--ECCeEEEEEEEeCCCcH
Confidence 4799999999999999999987543211 112223333222222 333 57889999953
No 275
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.72 E-value=3.5e-05 Score=73.16 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=35.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+. ++. .+.++||||.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDR----TEATIGVDFRERAVD--IDGERIKIQLWDTAGQ 79 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSS----CCCCCSCCEEEEEEE--ETTEEEEEEEEECCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCCcceEEEEEEEE--ECCEEEEEEEEECCCc
Confidence 5899999999999999999986543211 112223322222222 232 5789999994
No 276
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.72 E-value=3.4e-05 Score=72.80 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
..+|+|+|.+|||||||||+|++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999999764
No 277
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.71 E-value=1e-05 Score=86.34 Aligned_cols=57 Identities=26% Similarity=0.169 Sum_probs=41.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~ 462 (666)
+|.+||.+|||||||||+|+... ..++..|+||++...-...++ ..+.|+||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~------~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC------CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 68999999999999999998653 123578888876432222233 4689999999753
No 278
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.71 E-value=3.8e-05 Score=73.03 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=37.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
.+|+|+|.+|||||||+|+|++....... ....|++.....+. +. ..+.++||||...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDS----RTTIGVEFSTRTVM--LGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSC----CCCSSEEEEEEEEE--ETTEEEEEEEEEESCCCT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEE--ECCEEEEEEEEeCCCchh
Confidence 57999999999999999999976432211 12234333322222 22 2568999999754
No 279
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.71 E-value=2.4e-05 Score=72.02 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=36.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... ..+....+++........ ...+.++||||...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES---YIPTVEDTYRQVISCDKS-ICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS---CCCCSCEEEEEEEEETTE-EEEEEEEECCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCCccccEEEEEEECCE-EEEEEEEECCCchh
Confidence 4799999999999999999997542211 111222333333222110 11468999999653
No 280
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.70 E-value=1.4e-05 Score=87.57 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=39.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC--ceEEEECCCCCCCc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA--KAKLYDTPGLLHPH 464 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~--~~~liDTPGi~~~~ 464 (666)
..+|+|+|.+|+|||||+|+|++..... ++..+|||.+.......+.. .+.++||||+....
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~-----~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSI-----VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCc-----cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence 4589999999999999999999765322 35789999886544433433 68899999998654
No 281
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.70 E-value=4.7e-05 Score=72.28 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=38.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+. .. ..+.++||||...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPA----FVSTVGIDFKVKTVY--RHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCCCEEEEEEEE--ETTEEEEEEEEECCSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----cCCceeEEEEEEEEE--ECCeEEEEEEEeCCCcHH
Confidence 4799999999999999999997543211 123345554433332 22 2568999999543
No 282
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.69 E-value=4.3e-05 Score=73.16 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=36.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|++.... +..++||.+.......+.. .+.++||||...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYP-------TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 468999999999999999999975421 2345566554433222333 456999999854
No 283
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.68 E-value=5.4e-05 Score=88.55 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=31.6
Q ss_pred EEEEecccCcchhhHHHHHHhhc------C-----CCccEEEEccCCCChhHHHHhhhcccc
Q 005977 373 VYLVSARKDLGVRNLLAFIKELA------G-----PRGNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 373 V~~VSAkkg~Gv~eLl~~I~~~l------~-----~~~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
+.-.++..+.|+++|+..+.++. + .--+|+|+|.+|+|||||+|+|++...
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 45567777888888887765531 1 113799999999999999999998654
No 284
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.68 E-value=4.5e-05 Score=71.22 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=36.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++....... ....|++.....+. +.. .+.++||||..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----ESTIGAAFFSQTLA--VNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTS----CCCSCCSEEEEEEE--ETTEEEEEEEEECCCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcC----CCCceeEEEEEEEE--ECCEEEEEEEEeCCCCh
Confidence 57999999999999999999975432110 12223333332222 222 57899999953
No 285
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.68 E-value=3.4e-05 Score=74.27 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=37.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+|+|.+|||||||+|+|++.... ....|.++.+.......++. .+.++||||...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYT------NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC------TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC------CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 47999999999999999999875422 12334444333221112333 578999999653
No 286
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.68 E-value=3.7e-05 Score=71.02 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=31.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... ..+.+|.+.......++. .+.++||||...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA------HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc------ccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 3689999999999999999986543322 112222222222111222 456899999864
No 287
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.68 E-value=4.2e-05 Score=73.26 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=39.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|++..... ..+..|.+...+.+. +..+.++||||...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAIG---NIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEET---TEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEEC---CEEEEEEECCCCHH
Confidence 4589999999999999999999754321 123445554433333 23678999999753
No 288
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.67 E-value=5.5e-05 Score=72.54 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=37.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++...... ..+..|++.....+. +.. .+.++||||..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPA----FVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSC----CCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEE--ECCeEEEEEEEECCCch
Confidence 4799999999999999999997543211 122335444433332 222 56899999974
No 289
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.67 E-value=3.3e-05 Score=74.48 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=32.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+|+|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQ------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCc------cCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 589999999999999999999654322 1223333222211111332 5789999994
No 290
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.66 E-value=6.2e-05 Score=70.66 Aligned_cols=56 Identities=23% Similarity=0.126 Sum_probs=35.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|+..... ...+.|+..........+. .+.++||||..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFV-------DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-------CCCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 57899999999999999999965322 1222333322222222333 24569999954
No 291
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.64 E-value=3.2e-05 Score=75.58 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=40.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|+...... ..+..+|+|.....+. +.. .+.++||||..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~----~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVFH--TNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTC----EEETTTTEEEEEEEEE--ETTEEEEEEEEEECSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEE--ECCEEEEEEEEeCCChH
Confidence 579999999999999999966433211 1246778887765543 222 56889999953
No 292
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.64 E-value=5.6e-05 Score=70.78 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ....|+.+.......+.. .+.++||||..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPG-------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS-------SCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC-------CcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 479999999999999999998653221 222333332222212222 35689999974
No 293
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.63 E-value=6.1e-05 Score=72.95 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=38.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|+..... ...++|+.+.......+.. .+.++||||..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-------C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC-------CCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 468999999999999999999965322 2344555554433322322 34599999974
No 294
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.63 E-value=4.7e-05 Score=72.40 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=37.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++.....+. ..+..|++...+.. -...+.++||||..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK---GRVAFTVFDMGGAK 74 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE---TTEEEEEEEECCSG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe---CCEEEEEEECCCCH
Confidence 58999999999999999999976533210 12334444333221 12367899999974
No 295
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.63 E-value=7.5e-05 Score=71.23 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=36.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.+.......+.. .+.++||||...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI-------SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-------SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC-------cccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 58999999999999999999975422 2334454443222222332 467899999653
No 296
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=5.5e-05 Score=71.49 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=37.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ......|++.....+. +.. .+.++||||..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDP----ELAATIGVDFKVKTIS--VDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT----TCCCCCSEEEEEEEEE--ETTEEEEEEEEEECSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCc----cCCCccceEEEEEEEE--ECCeEEEEEEEeCCCch
Confidence 589999999999999999998754221 1123334444333332 222 46889999954
No 297
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.61 E-value=5.6e-05 Score=72.00 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=35.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++....... ....|++.....+. ++. .+.++||||..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMVN--IDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---------CCSSEEEEEEE--ETTEEEEEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEE--ECCEEEEEEEEECCCch
Confidence 47999999999999999999975432211 12223333322222 232 57899999954
No 298
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.61 E-value=4.4e-05 Score=73.74 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=36.5
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
+..+|+++|.+|||||||+|+|.+..... ..+..|++...+.+.+ ..+.++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-----HVPTLHPTSEELTIAG---MTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEETT---EEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCCCCceeEEEEECC---EEEEEEECCCcHh
Confidence 34689999999999999999998754221 1233455544444332 3678999999653
No 299
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.61 E-value=2.1e-05 Score=73.96 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... ....|+++.+.......+++ .+.++||||..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFN------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 57999999999999999999864321 12334445444322222332 57899999954
No 300
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=6.5e-05 Score=73.13 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=36.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi 460 (666)
.+|+++|.+|||||||+|+|++.... ....|.++.+.......++. .+.++||||.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFP------PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC------CCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 57999999999999999999865321 12233334443322222333 5688999995
No 301
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.60 E-value=6.1e-05 Score=72.47 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=36.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
.+|+|+|.+|||||||+|+|++..... ..+.|+.........+. -.+.++||||...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSE-------GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-------CCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-------CCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence 589999999999999999999754321 22333333222111111 2457999999654
No 302
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.60 E-value=8.2e-05 Score=70.90 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=36.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++.... .....|+............ .+.++||||..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP-------TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-------CccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 58999999999999999999975421 1223343333222222222 34799999943
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.60 E-value=3.1e-05 Score=72.17 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=35.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... ..|.++.+.......++ ..+.++||||...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQ------YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHH------HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCC------CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 5799999999999999999997543211 11222222211111122 2578999999653
No 304
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=6e-05 Score=72.37 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=34.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++...... .....|++.....+. ++. .+.++||||..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFREN----ISATLGVDFQMKTLI--VDGERTVLQLWDTAGQE 88 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC--------------CEEEEEE--ETTEEEEEEEEECTTCT
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCcc----CCCCccceeEEEEEE--ECCEEEEEEEEECCCCc
Confidence 36899999999999999999987542211 123345444333322 222 47899999954
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.58 E-value=4.6e-05 Score=73.54 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=37.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++..... +..|++|.+.......++. .+.++||||...
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDS------AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCG------GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCc------cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 579999999999999999998543211 2345555444332222333 356789999753
No 306
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=6.1e-05 Score=72.90 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=34.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... ..|.++.... ....++. .+.++||||...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~------~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV------YVPTVFENYV-ADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------------CCEEE-EEEEETTEEEEEEEEECTTCTT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc------CCCcccceEE-EEEEECCEEEEEEEEECCCcHH
Confidence 5899999999999999999997543211 1122222221 1112333 467899999653
No 307
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.58 E-value=7.6e-05 Score=72.26 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=38.6
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++.... ...+.++.+...+. ++ ..+.++||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-------DTQTSITDSSAIYK--VNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCC-------CBCCCCSCEEEEEE--CSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-------cccCCcceeeEEEE--ecCCCccEEEEEECCCCh
Confidence 358999999999999999999975422 23455555544433 33 247899999974
No 308
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.57 E-value=9.5e-05 Score=69.42 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999999654
No 309
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.57 E-value=0.00014 Score=75.13 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 389 AFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 389 ~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
+.+........+|+++|.+|||||||+|+|+..... ...++||.+.......... .+.++||||..
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFP-------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCCC-------CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCCC-------cccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 333344445578999999999999999999865321 2445666665443322332 34589999964
No 310
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.57 E-value=4.4e-05 Score=86.41 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCcee
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTL 439 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~ 439 (666)
..|+|+|.+|||||||||+|++..... ..++..|+||+
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~---~~vs~~p~T~~ 103 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPG---SRVGPEPTTDC 103 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSS---CCCCSSCCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc---CccCCCCccce
Confidence 579999999999999999999865321 01346676655
No 311
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.56 E-value=3.4e-05 Score=71.83 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=32.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC----CceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP----AKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~----~~~~liDTPGi 460 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++ ..+.++||||.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQ------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT------TC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCc------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 579999999999999999998754221 122322222222111122 14688999994
No 312
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.56 E-value=6.6e-05 Score=72.91 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=38.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++...... .....|++.....+.. ... .+.++||||...
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLD-DQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEB-TTSCEEEEEEEEECSGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEe-CCCcEEEEEEEecCCchh
Confidence 5899999999999999999996543221 1234454443333321 111 368899999754
No 313
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.55 E-value=6e-05 Score=69.22 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=34.5
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
+|+++|.+|||||||+|+|++..... ..|.+......+.. -...+.++||||..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-------CCCCSSCCEEEEEC-SSCEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-------ccCcCceeEEEEEE-CCEEEEEEEcCCCh
Confidence 68999999999999999998654221 22311111112221 12467899999974
No 314
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.55 E-value=0.00019 Score=77.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.1
Q ss_pred CceeeeccCCCchH-HHHHHHhhhh
Q 005977 202 GFTPAGVGYGNITE-ELVERSKKKK 225 (666)
Q Consensus 202 G~~~a~vGrpNvg~-tlLn~l~~~K 225 (666)
|+..++||+||+|| ||+|++.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 56677899999995 5559998876
No 315
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.54 E-value=6.9e-05 Score=71.28 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=35.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++...... ..+..|.+.. .+.. -...+.++||||..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMR--KITK-GNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEE--EEEE-TTEEEEEEEECCSH
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEE--EEEe-CCEEEEEEECCCCH
Confidence 5799999999999999999996543211 1122233322 2221 12367899999953
No 316
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.54 E-value=6.2e-05 Score=73.86 Aligned_cols=58 Identities=28% Similarity=0.383 Sum_probs=35.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+|+|.+|||||||+|+|++....... .+..|++.....+. ++. .+.++||||...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDS----KSTIGVEFATRTLE--IEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC----------CCSEEEEEEE--ETTEEEEEEEECCTTTTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEE--ECCEEEEEEEEECCCccc
Confidence 47999999999999999999975432211 11222222222222 333 578999999654
No 317
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.54 E-value=0.00011 Score=74.56 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=32.0
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS 347 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk 347 (666)
..+|++++|+|+.... + ...+..+++.+..... ....+|+++|+||+|+.+.
T Consensus 115 ~~~~~il~V~~~d~~~--~-~~~~~~~~~~l~~~~~----~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA--V-DELDKQVVIAITQTFG----KEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp CEECEEEEEEESSCSC--C-CHHHHHHHHHHHHHHC----GGGGGGEEEEEECTTCCCS
T ss_pred CCCCEEEEEEcCCCCC--C-CHHHHHHHHHHHHHhc----hhhhcCEEEEEeCcccCCC
Confidence 4789999998875532 2 2233445555554211 0012389999999999754
No 318
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=3.4e-05 Score=82.68 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=39.5
Q ss_pred cCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHH---HHHHHHhCCC
Q 005977 291 AGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRW---VRHRAKAGGA 367 (666)
Q Consensus 291 aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~w---l~~~~k~~g~ 367 (666)
+++++++|+... .++. .++..++..+. ...|+|+|+||+|++.... +..+ +....+..+.
T Consensus 146 v~~~vy~I~~~~--~~l~-~~d~~~~~~l~----------~~~piIlV~NK~Dl~~~~e----v~~~k~~i~~~~~~~~i 208 (361)
T 2qag_A 146 VHCCFYFISPFG--HGLK-PLDVAFMKAIH----------NKVNIVPVIAKADTLTLKE----RERLKKRILDEIEEHNI 208 (361)
T ss_dssp CCEEEEEECSSS--SSCC-HHHHHHHHHTC----------S-SCEEEEEECCSSSCHHH----HHHHHHHHHHHTTCC-C
T ss_pred eEEEEEEEecCC--CCcc-hhHHHHHHHhc----------cCCCEEEEEECCCCCCHHH----HHHHHHHHHHHHHHCCC
Confidence 457888887522 1222 23333333331 3468999999999986432 3322 2222233443
Q ss_pred CCCCeEEEEecccCcc---hhhHHHHHHhh
Q 005977 368 PKLNGVYLVSARKDLG---VRNLLAFIKEL 394 (666)
Q Consensus 368 ~~~~~V~~VSAkkg~G---v~eLl~~I~~~ 394 (666)
.++.+||+++.+ +..|.+.|.+.
T Consensus 209 ----~~~~~Sa~~~~~~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 209 ----KIYHLPDAESDEDEDFKEQTRLLKAS 234 (361)
T ss_dssp ----CSCCCC---------CHHHHHHHHHT
T ss_pred ----CEEeCCCcCCCcchhHHHHHHHHHhc
Confidence 378999999987 22344444443
No 319
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=0.00014 Score=69.44 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=37.0
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|++..... ....|+.........+.. .+.++||||...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-------EYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS-------CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-------ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 4689999999999999999999754321 112222221111111222 468899999875
No 320
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.53 E-value=0.00011 Score=74.89 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=32.1
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
..+|++++|+|+... ++. ..+..++..+..... .....|+++|+||+|+.++.
T Consensus 118 ~~~d~il~v~~~d~~--~~~-~~~~~~~~~l~~~~~----~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY--RVD-NLDKLVAKAITDSFG----KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCC--CCC-HHHHHHHHHHHHHHC----GGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCC--cCC-HHHHHHHHHHHHHhC----cccccCEEEEEECcccCCcC
Confidence 468999999888542 222 233444555543210 00114899999999998654
No 321
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.53 E-value=9.3e-05 Score=72.23 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ....|+.+.......+.. .+.++||||..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE-------SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-------CCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3589999999999999999999654221 222333332222222333 46899999954
No 322
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.51 E-value=1.8e-05 Score=76.18 Aligned_cols=57 Identities=25% Similarity=0.255 Sum_probs=36.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++..... ...|++|.+.......++. .+.++||||..
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTE------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCC------HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------CcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 589999999999999999998654221 1223333333222211332 47889999954
No 323
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.51 E-value=4.7e-05 Score=80.89 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=48.9
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC--
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG-- 366 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g-- 366 (666)
..+|++++|+|+...+. . ..+...+.. .+.++|+||+|+.+... ....+.+.+.....
T Consensus 167 ~~~d~vl~v~d~~~~~~--~----~~i~~~i~~-----------~~~ivvlNK~Dl~~~~~---~s~~~~~~l~~a~~l~ 226 (337)
T 2qm8_A 167 DLTDFFLVLMLPGAGDE--L----QGIKKGIFE-----------LADMIAVNKADDGDGER---RASAAASEYRAALHIL 226 (337)
T ss_dssp TTSSEEEEEECSCC------------CCTTHHH-----------HCSEEEEECCSTTCCHH---HHHHHHHHHHHHHTTB
T ss_pred hhCCEEEEEEcCCCccc--H----HHHHHHHhc-----------cccEEEEEchhccCchh---HHHHHHHHHHHHHHhc
Confidence 57899999999754210 0 001000111 14577889999875321 11122222221110
Q ss_pred CC----CCCeEEEEecccCcchhhHHHHHHhhc
Q 005977 367 AP----KLNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 367 ~~----~~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
.+ ....|+++||+++.|+++|++.|.++.
T Consensus 227 ~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 227 TPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 023589999999999999999998764
No 324
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=8.5e-05 Score=70.66 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=37.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++.... ...+.|+.+.......+.. .+.++||||...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAFP-------EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-------CCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 47999999999999999999975321 1233344332222222222 467899999754
No 325
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.50 E-value=6.8e-05 Score=71.23 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|++....... .....|.+...+.+. +..+.++||||...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~~---~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKSS---SLSFTVFDMSGQGR 79 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEECS---SCEEEEEEECCSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEEC---CEEEEEEECCCCHH
Confidence 358999999999999999999976421110 112223222222221 24678999999653
No 326
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.49 E-value=8.6e-05 Score=71.76 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.......++. .+.++||||..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSE------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCC------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999998654221 1122222222221112333 57899999953
No 327
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=6.9e-05 Score=71.20 Aligned_cols=60 Identities=25% Similarity=0.211 Sum_probs=35.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++...... .......+++..+.+.. ....+.++||||..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDT---YIPTIEDTYRQVISCDK-SVCTLQITDTTGSH 67 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCT---TSCCCCEEEEEEEEETT-EEEEEEEEECCGGG
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCc---ccCccccceeEEEEECC-EEEEEEEEeCCChH
Confidence 35899999999999999999987532211 00111122222222110 01156899999954
No 328
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.46 E-value=2.7e-05 Score=83.05 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.8
Q ss_pred CccEEEEccCCCChhHHHHhhhc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
...|.++|.||+|||||+|+|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 329
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.45 E-value=9.3e-05 Score=81.32 Aligned_cols=63 Identities=27% Similarity=0.205 Sum_probs=42.9
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEeC-Cce
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGILP-AKA 452 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~-------------------------~~lt~S~~PGTT~~~~~~~~~l~-~~~ 452 (666)
.++.++|.+|+|||||+|+|+...+... ........+|+|.+........+ ..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 5899999999999999999976532211 11112234789988755433222 368
Q ss_pred EEEECCCCC
Q 005977 453 KLYDTPGLL 461 (666)
Q Consensus 453 ~liDTPGi~ 461 (666)
.++||||..
T Consensus 98 ~iiDTPGh~ 106 (439)
T 3j2k_7 98 TILDAPGHK 106 (439)
T ss_pred EEEECCChH
Confidence 899999964
No 330
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00011 Score=71.11 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|+..... ...++|+.+.......+.. .+.++||||...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-------TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-------SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-------ccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 57999999999999999999865421 1223333332222211332 568899999853
No 331
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.44 E-value=5e-05 Score=71.00 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=31.4
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|+..... ...++|+.+.......+. -.+.++||||...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP-------TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------------CBCCCC-------CEEECCCC-CT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-------CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 368999999999999999999865421 122333332211111111 2456999999653
No 332
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=3.8e-05 Score=73.18 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=37.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi 460 (666)
.+|+|+|.+|||||||+|+|++....... ....|++.....+.... .-.+.++||||.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAF----VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCE----EEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCccc----CCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 57999999999999999999975432211 12235555544433110 114789999993
No 333
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.42 E-value=8.6e-05 Score=72.04 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=21.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+|+|.+|||||||+|+|++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999999754
No 334
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.42 E-value=0.00013 Score=69.98 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=33.5
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|+....... .+..|.+...+.. -...+.++||||...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY---KNICFTVWDVGGQDK 85 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE---TTEEEEEEECC----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE---CCEEEEEEECCCCHh
Confidence 46899999999999999999986543211 1112222111121 123678999999753
No 335
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.42 E-value=7.1e-05 Score=83.14 Aligned_cols=74 Identities=28% Similarity=0.328 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccce-------------------------eecccccCCCCceeEE
Q 005977 387 LLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVK-------------------------VSKLTEAPIPGTTLGI 441 (666)
Q Consensus 387 Ll~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~-------------------------~~~lt~S~~PGTT~~~ 441 (666)
+..++.. ..+..+|.++|.+|+|||||+|+|+...... .........+|+|.+.
T Consensus 23 i~~~l~~-~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~ 101 (483)
T 3p26_A 23 ISAFVKS-ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI 101 (483)
T ss_dssp HHHHHHH-SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC
T ss_pred HHHHHhc-CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe
Confidence 4444443 2334689999999999999999998652110 1122334567888876
Q ss_pred EEEeeEe-CCceEEEECCCCC
Q 005977 442 LRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 442 ~~~~~~l-~~~~~liDTPGi~ 461 (666)
....... ...+.|+||||..
T Consensus 102 ~~~~~~~~~~~~~iiDTPG~~ 122 (483)
T 3p26_A 102 CTSHFSTHRANFTIVDAPGHR 122 (483)
T ss_dssp CEEEEECSSCEEEEECCCCCG
T ss_pred eeEEEecCCceEEEEECCCcH
Confidence 5443222 2367899999984
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.40 E-value=0.00014 Score=69.02 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=33.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe------CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL------PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l------~~~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++......+ ...|.++.+.......+ .-.+.++||||..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~----~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG----MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC----CcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 47999999999999999999974211110 11222333433222111 2256889999963
No 337
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.40 E-value=0.00037 Score=80.20 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=41.0
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ 348 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~ 348 (666)
|++ ||..-+.+ ++.-+|.+|+|||+.. |-.++. +.++..+.+. +.|.|+++||+|....+
T Consensus 75 PGH~DF~~Ev~r------aL~~~DgavlVVDa~~--GV~~qT--~~v~~~a~~~---------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 75 PGHMDFLAEVYR------SLSVLDGAILLISAKD--GVQAQT--RILFHALRKM---------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CCSSSTHHHHHH------HHTTCSEEECCEESSC--TTCSHH--HHHHHHHHHH---------TCSCEECCEECCSSSCC
T ss_pred CCcHHHHHHHHH------HHHHhCEEEEEEeCCC--CCcHHH--HHHHHHHHHc---------CCCeEEEEeccccccCC
Confidence 766 57776665 3445899999999988 666643 3444544442 34678999999986543
No 338
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.39 E-value=6.2e-05 Score=71.90 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=16.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCcee-EEEEEeeEeCC-----ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTL-GILRIGGILPA-----KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~-~~~~~~~~l~~-----~~~liDTPGi~ 461 (666)
.+|+|+|.+|||||||+|+|++...... +..+.|+. +.......++. .+.++||||..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFL-----KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEC---------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc-----CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 5899999999999999999987521111 12233332 32221112332 47899999973
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.39 E-value=0.00021 Score=67.53 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999999754
No 340
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.39 E-value=0.00018 Score=76.58 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred cEEEEccCCCChhHHHHhhhcccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
.|+|||.+|+|||||+|+|++...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 799999999999999999998643
No 341
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.39 E-value=0.0001 Score=70.80 Aligned_cols=59 Identities=24% Similarity=0.085 Sum_probs=33.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|++||.+|||||||+|+|++....-. +..+.++.+.......+++ .+.++||+|...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMD-----SDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC---------GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcC-----ccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 4799999999999999999986432111 1223333332222122333 346789998653
No 342
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.36 E-value=0.00016 Score=67.53 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=35.2
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+++|.+|||||||+|+|++..... ..+..|++.. ..+ .++. .+.++||||...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-----LEKTESEQYK-KEM--LVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC-----CSSCSSSEEE-EEE--EETTEEEEEEEEECSSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----cCCCcceeEE-EEE--EECCEEEEEEEEECCCCch
Confidence 579999999999999999999754321 1122232211 111 1222 467899999654
No 343
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.35 E-value=0.00014 Score=69.92 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=35.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|+++|.+|||||||+|+|++..... ...|.++.+.... ..++. .+.++||||..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPE------VYVPTVFENYIAD-IEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS------SCCCSSCCCCEEE-EEETTEEEEEEEECCCCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCc------ccCCcccceEEEE-EEECCEEEEEEEEECCCch
Confidence 579999999999999999999754321 1223333322111 11232 46789999953
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.35 E-value=0.0001 Score=71.62 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=37.3
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+++++|.+|||||||+|+|++...... ..+..|+++.+. ....+.++||||..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADY------DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTG------GGSSCEEEECCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEEEe------eCceEEEEECCCcH
Confidence 35899999999999999999997542211 112334333322 23468999999985
No 345
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.31 E-value=7e-05 Score=85.80 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=42.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccccceeec-------------------------ccccCCCCceeEEEEEeeEe-CC
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKEGVKVSK-------------------------LTEAPIPGTTLGILRIGGIL-PA 450 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~-------------------------lt~S~~PGTT~~~~~~~~~l-~~ 450 (666)
...+|.++|.+|+|||||+|+|++........ .+....+|+|++........ ..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 35689999999999999999998653321110 00112378887754322212 23
Q ss_pred ceEEEECCCCC
Q 005977 451 KAKLYDTPGLL 461 (666)
Q Consensus 451 ~~~liDTPGi~ 461 (666)
.+.|+||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 68899999974
No 346
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.31 E-value=4.8e-05 Score=80.80 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhc
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
.+++.+.-....+..+.++|.+|+|||||+|.|++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555543445566889999999999999999984
No 347
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.30 E-value=0.00028 Score=68.95 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=35.6
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ....|+.........+.. .+.|+||||..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-------TYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCS-------SCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-------CcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 3689999999999999999998754221 222233222222111222 46789999964
No 348
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00034 Score=66.62 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|+|+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 349
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.27 E-value=0.00033 Score=68.15 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=35.3
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++..... ...|.+.... .....+.. .+.++||||..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPE------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS------SCCCCSEEEE-EEEEESSSSEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC------CcCCccceeE-EEEEEECCEEEEEEEEeCCCcH
Confidence 3589999999999999999999754221 1122211111 11111222 46889999964
No 350
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.26 E-value=0.00021 Score=78.12 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=44.1
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCCC
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~~ 462 (666)
.+.+.|......++.++++|.+|+|||||||.|++......+.++.. .+-+|+..+-++.......+++|+||+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~-g~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG-VVEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC-C----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEEC-CeecceeEEeccccccCCeeehHhhcccc
Confidence 44455554444566899999999999999999998532222222211 11133322222211224689999999864
No 351
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00021 Score=70.62 Aligned_cols=58 Identities=24% Similarity=0.095 Sum_probs=34.1
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~ 461 (666)
.+|++||.+|||||||+|+|++....-. +..+.++.+.......+++ .+.++||+|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~-----~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMD-----SDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTC-----CC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-----CcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 4799999999999999999986432111 1223333332222112333 34678999853
No 352
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.25 E-value=0.00036 Score=67.03 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++++|.+|||||||+|+|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999764
No 353
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.21 E-value=0.00036 Score=72.74 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCCCccEEEEcc
Q 005977 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGPRGNVWVIGA 406 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~~~~v~vvG~ 406 (666)
..++++|+||.|++..... .....-+....+..+.+ ++.+||+++ |+++++..+.+.+.......+||.
T Consensus 155 ~~~iilV~~K~Dl~~~~e~-~~~~~~~~~~~~~~~~~----~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avigs 223 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKER-ERLKKRILDEIEEHNIK----IYHLPDAES-DEDEDFKEQTRLLKASIPFSVVGS 223 (301)
T ss_dssp TSCEEEEECCGGGSCHHHH-HHHHHHHHHHHHHTTCC----CCCCC----------CHHHHHHHHTTCSEECCCC
T ss_pred cCCEEEEEEeCCCCCHHHH-HHHHHHHHHHHHHcCCe----EEecCCccc-cccHHHHHHHHHhhcCCCceEECC
Confidence 3479999999999864321 11112233334555643 788999999 999988777665444445566654
No 354
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.20 E-value=0.0031 Score=73.36 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=38.9
Q ss_pred Ccc-hHHHHHHHHhcCcccccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCC
Q 005977 270 PDF-DFDRVIATRLMKPSGNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLP 346 (666)
Q Consensus 270 P~~-df~~~L~~~l~rP~a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLp 346 (666)
|++ ||..-+.+ ++.-+|-+|+|||+.. |-.+.. +.++....+ .+.|.|+++||+|...
T Consensus 93 PGHvDF~~Ev~~------aLr~~DgavlvVDave--GV~~qT--~~v~~~a~~---------~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDFTIEVER------SLRVLDGAVVVFCGTS--GVEPQS--ETVWRQANK---------YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CSCTTCHHHHHH------HHHHCSEEEEEEETTT--CSCHHH--HHHHHHHHH---------HTCCEEEEEECSSSTT
T ss_pred CCCcccHHHHHH------HHHHhCeEEEEEECCC--CCchhH--HHHHHHHHH---------cCCCeEEEEccccccC
Confidence 765 57666655 3445899999999988 655533 334443333 2347899999999864
No 355
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.20 E-value=0.00079 Score=72.45 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=31.1
Q ss_pred CcEEEEEeCCC--CCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHH
Q 005977 333 PKLVLVGTKVD--LLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLA 389 (666)
Q Consensus 333 kpvILVlNKiD--LLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~ 389 (666)
+|+++|+||.| +... .... ..+-++.+.+..+. .++++||+...++.+|.+
T Consensus 202 KPvi~v~N~~e~d~~~~-~~n~-~~~~v~~~a~~~g~----~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDG-RGNP-QVEAVRRKALEEGA----EVVVVSARLEAELAELSG 254 (368)
T ss_dssp SCEEEEEECCGGGTTTC-TTCH-HHHHHHHHHHHHTC----EEEEECHHHHHHHHTSCH
T ss_pred CCeEEeccccHHhhccc-chhh-HHHHHHHHHHHcCC----eEEEeechhHHHHHHhch
Confidence 69999999997 3332 0011 22223333333343 489999999888777654
No 356
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.19 E-value=6.9e-05 Score=85.51 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=28.8
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceee-------------------------cccccCCCCceeEEEEEeeEeC-Cce
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS-------------------------KLTEAPIPGTTLGILRIGGILP-AKA 452 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~-------------------------~lt~S~~PGTT~~~~~~~~~l~-~~~ 452 (666)
.+|.++|.+|+|||||+|+|+...+.... .......+|+|++........+ ..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 57999999999999999999754221110 0111236788988754432222 367
Q ss_pred EEEECCCCC
Q 005977 453 KLYDTPGLL 461 (666)
Q Consensus 453 ~liDTPGi~ 461 (666)
.|+||||..
T Consensus 258 ~iiDTPGh~ 266 (592)
T 3mca_A 258 EIGDAPGHR 266 (592)
T ss_dssp -CCEEESSS
T ss_pred EEEECCChH
Confidence 899999975
No 357
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.19 E-value=0.00031 Score=76.85 Aligned_cols=59 Identities=31% Similarity=0.371 Sum_probs=41.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC--CceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP--AKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~--~~~~liDTPGi~~~ 463 (666)
..+.+||.+|+|||||+|+|++... .++..|.||+....-...++ ..+.++||||+...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceecceeeEEEecCcceEEEEeccccccc
Confidence 4789999999999999999987532 23567887765422111122 45789999999753
No 358
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.18 E-value=0.00042 Score=66.33 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=36.5
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEee--EeCCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGG--ILPAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~--~l~~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|.|.+..... .+ ...+.|........ .-.-.+.++||||...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ET--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GG--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ce--eeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 3589999999999999999988753221 11 11122222222211 0123678999999654
No 359
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.16 E-value=0.00057 Score=65.45 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=35.5
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+++++|.+|||||||+|+|++...... ..|.++.+.......+.+ ...++||||...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLE------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCS------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999997543211 223333222211111232 235699999754
No 360
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.16 E-value=0.00022 Score=78.97 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=37.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi~ 461 (666)
..+|+++|.+|||||||+|+|++.... ...+..|++...+.+. +-.+.|+||||..
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~-----~~~~T~~~~~~~~~~~---~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYK---NVKFNVWDVGGQD 377 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-----CCCCCSSEEEEEEESS---SCEEEEEEECCCG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-----CcCCccceeEEEEEeC---CEEEEEEECCCcH
Confidence 358999999999999999999976522 1123334443333222 2368899999943
No 361
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.12 E-value=0.0011 Score=72.40 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=66.7
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCC----CC----CCChHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLL----PS----QVSPTRLDRWVR 359 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLL----pk----~~~~~~L~~wl~ 359 (666)
+.+.+.++. ++...+ ..-+..+...|.. .++|+++|+||.|++ |. ......+...++
T Consensus 146 L~~~~~~~~-lS~G~~-----~kqrv~la~aL~~---------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 146 FYEYDFFII-ISATRF-----KKNDIDIAKAISM---------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp GGGCSEEEE-EESSCC-----CHHHHHHHHHHHH---------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred CCccCCeEE-eCCCCc-----cHHHHHHHHHHHh---------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 344566665 776541 1223345555544 346899999999986 11 112344555555
Q ss_pred HHH----HhCCCCCCCeEEEEec--ccCcchhhHHHHHHhhcCCCccEE-EEccCCCChhHH
Q 005977 360 HRA----KAGGAPKLNGVYLVSA--RKDLGVRNLLAFIKELAGPRGNVW-VIGAQNAGKSTL 414 (666)
Q Consensus 360 ~~~----k~~g~~~~~~V~~VSA--kkg~Gv~eLl~~I~~~l~~~~~v~-vvG~~NvGKSTL 414 (666)
.+. .+.|.+ ...++++|+ .++.|+++|.+.|.+.+|++...+ +.=.+++...++
T Consensus 211 ~l~~~~l~~~g~~-~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~ 271 (413)
T 1tq4_A 211 LNCVNTFRENGIA-EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVI 271 (413)
T ss_dssp HHHHHHHHHTTCS-SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHH
T ss_pred HHHHHHHHhcCCC-CCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHH
Confidence 543 233321 446899999 566779999999999988764433 233467665544
No 362
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.18 E-value=7.5e-05 Score=71.88 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=35.7
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
..+|+++|.+|||||||+|+|+...... ....|+.+......... -.+.++||||...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG-------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 3589999999999999999998643221 22233333222111111 1345899999653
No 363
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.07 E-value=0.00035 Score=74.81 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=29.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeeccc-ccCC--CCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLT-EAPI--PGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt-~S~~--PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+|||.+|+|||||+|+|++......+.+. .+.. |+++.+...+.....+ .+.++||||+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 57899999999999999999875433221110 0111 2222232222111111 478999999953
No 364
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.04 E-value=9.3e-05 Score=83.50 Aligned_cols=58 Identities=28% Similarity=0.294 Sum_probs=41.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe--CCceEEEECCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL--PAKAKLYDTPGLL 461 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l--~~~~~liDTPGi~ 461 (666)
...|.++|.+|+|||||+|+|++.... ....||+|.++......+ +..+.++||||..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~------~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA------AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH------HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc------cccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 357899999999999999999875422 235688887754332222 2368899999964
No 365
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.03 E-value=0.00025 Score=78.32 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.8
Q ss_pred cEEEEccCCCChhHHHHhhhcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
-|.|+|.+|+|||||+|.|++.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4678999999999999999964
No 366
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.01 E-value=0.00027 Score=75.96 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=35.0
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
+|.++|.+|+|||||+|+|+. +|+|.+........ ...+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------------KGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------------EEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHh--------------CCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 799999999999999999981 34444433222112 23688999999764
No 367
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.00 E-value=0.00023 Score=84.36 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=47.8
Q ss_pred cccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC--CCh----HHHHHHHHH
Q 005977 287 GNANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ--VSP----TRLDRWVRH 360 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~--~~~----~~L~~wl~~ 360 (666)
++..+|.+|+|+|+.+. ..... ..++..+.. .+.|+|+|+||+|+...+ ... ..+...+..
T Consensus 118 ~l~~aD~ailVvDa~~g--~~~qt--~~~~~~~~~---------~~~p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~ 184 (842)
T 1n0u_A 118 ALRVTDGALVVVDTIEG--VCVQT--ETVLRQALG---------ERIKPVVVINKVDRALLELQVSKEDLYQTFARTVES 184 (842)
T ss_dssp HHHTCSEEEEEEETTTB--SCHHH--HHHHHHHHH---------TTCEEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCC--CCHHH--HHHHHHHHH---------cCCCeEEEEECCCcchhhhccCHHHHHHHHHHHHHH
Confidence 34569999999999984 33322 222222222 346899999999997321 111 223333333
Q ss_pred HHHhC--------C---C-CCCCeEEEEecccCcch
Q 005977 361 RAKAG--------G---A-PKLNGVYLVSARKDLGV 384 (666)
Q Consensus 361 ~~k~~--------g---~-~~~~~V~~VSAkkg~Gv 384 (666)
....+ + + +....|.+.||++|||+
T Consensus 185 i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 185 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp HHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred HHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 32221 1 1 11225889999999874
No 368
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.00 E-value=0.00025 Score=78.87 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=33.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce-eecccccCCCCceeEEEEEeeEeCC-ceEEEECCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK-VSKLTEAPIPGTTLGILRIGGILPA-KAKLYDTPGL 460 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~-~~~lt~S~~PGTT~~~~~~~~~l~~-~~~liDTPGi 460 (666)
.++.++|.+|+|||||+|+|++..... .........+|+|.+.......++. .+.++||||.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 479999999999999999998754111 1122335678888775322222333 6789999996
No 369
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.97 E-value=0.00022 Score=80.31 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=39.0
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee--ec--------------ccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SK--------------LTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~--~~--------------lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
.+|+|+|.+|+|||||+|+|+...+... +. ......+|+|.......... +..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 4899999999999999999974322210 00 00011256554432222112 2367899999986
Q ss_pred CC
Q 005977 462 HP 463 (666)
Q Consensus 462 ~~ 463 (666)
..
T Consensus 94 df 95 (528)
T 3tr5_A 94 DF 95 (528)
T ss_dssp TC
T ss_pred hH
Confidence 53
No 370
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.00063 Score=71.72 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=33.9
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCCceEEEECCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPAKAKLYDTPGL 460 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~~~~liDTPGi 460 (666)
..+|+|+|.+|||||||+|+|++..... ..|.+......+.. -...+.|+||||-
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~-------~~pT~~~~~~~~~~-~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEY-KNISFTVWDVGGQ 219 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEE-------EEEETTEEEEEEEE-TTEEEEEEECC--
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCC-------cccccceEEEEEec-CcEEEEEEECCCC
Confidence 3579999999999999999998765321 12311122222221 1236789999993
No 371
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.95 E-value=0.0011 Score=74.33 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=49.9
Q ss_pred ccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcE-EEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 290 NAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKL-VLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 290 ~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpv-ILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
.+|.+++|||+.. +.... .+...+.. . .|+ ++|+||+|...+.. . ...+.. ..+.|
T Consensus 213 ~pd~vllVvDa~~--g~~~~----~~a~~~~~---------~-~~i~gvVlNK~D~~~~~g--~-~l~~~~----~~g~P 269 (504)
T 2j37_W 213 QPDNIVYVMDASI--GQACE----AQAKAFKD---------K-VDVASVIVTKLDGHAKGG--G-ALSAVA----ATKSP 269 (504)
T ss_dssp CCSEEEEEEETTC--CTTHH----HHHHHHHH---------H-HCCCCEEEECTTSCCCCT--H-HHHHHH----HHCCC
T ss_pred cCceEEEEEeccc--cccHH----HHHHHHHh---------h-cCceEEEEeCCccccchH--H-HHHHHH----HhCCC
Confidence 5789999999987 32211 12222222 1 254 88999999985533 1 222221 22222
Q ss_pred --------------CCCeEEEEecccCcc-hhhHHHHHHhh
Q 005977 369 --------------KLNGVYLVSARKDLG-VRNLLAFIKEL 394 (666)
Q Consensus 369 --------------~~~~V~~VSAkkg~G-v~eLl~~I~~~ 394 (666)
.+..++++|+..|.| +..|++.+.+.
T Consensus 270 I~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 270 IIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 123345689999999 99999999865
No 372
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.0012 Score=72.41 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=44.4
Q ss_pred HHHHHhhcCCCcc--EEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeC---CceEEEECCCCCC
Q 005977 388 LAFIKELAGPRGN--VWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILP---AKAKLYDTPGLLH 462 (666)
Q Consensus 388 l~~I~~~l~~~~~--v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~---~~~~liDTPGi~~ 462 (666)
++.+.-..+.+.. ++|||.+|+|||||+|.|++..... .......|++++..+.+..... ...+++||||+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g--~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG--EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC--CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 4444444555655 8999999999999999999864211 1111234677765443321111 2578999999975
Q ss_pred C
Q 005977 463 P 463 (666)
Q Consensus 463 ~ 463 (666)
.
T Consensus 108 ~ 108 (427)
T 2qag_B 108 Q 108 (427)
T ss_dssp -
T ss_pred c
Confidence 3
No 373
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.88 E-value=0.00046 Score=74.61 Aligned_cols=63 Identities=24% Similarity=0.232 Sum_probs=41.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~----------~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
.+|.++|.+|+|||||+|+|++..... .........+|+|.+........ ...+.++||||..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 579999999999999999998641100 00111123578888764443222 2468899999974
No 374
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.88 E-value=0.0005 Score=77.14 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=28.8
Q ss_pred cchhhHHHHHHhhcC-----------CCccEEEEccCCCChhHHHHhhhccc
Q 005977 382 LGVRNLLAFIKELAG-----------PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~-----------~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.|+..+++++++... ...+|++||.+|||||||+|+|++..
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 455566555554322 12579999999999999999999754
No 375
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.87 E-value=0.00071 Score=63.63 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+++|.+|||||||+|.|.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999887643
No 376
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.87 E-value=0.00028 Score=76.36 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=41.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce-----------eecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK-----------VSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~-----------~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
.++.++|.+|+|||||+|+|++..... .........+|+|.+........ ...+.++||||...
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 579999999999999999998731000 00001112467777754443222 24689999999753
No 377
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.83 E-value=0.00025 Score=78.28 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=20.9
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.++.++|.+|+|||||+|+|++.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 378
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.83 E-value=0.00045 Score=80.24 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=35.8
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee--e----cccccC------CCCceeEEEEEeeEe-CCceEEEECCCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--S----KLTEAP------IPGTTLGILRIGGIL-PAKAKLYDTPGLLHP 463 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~--~----~lt~S~------~PGTT~~~~~~~~~l-~~~~~liDTPGi~~~ 463 (666)
.+|.++|.+|+|||||+|+|+...+... + ..+++. .+|+|+........+ +..+.|+||||....
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4789999999999999999985322110 0 001112 356665543222222 236789999999753
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.78 E-value=0.00086 Score=71.38 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=26.0
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.++..+....+....|.++|.+|||||||+|+|...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 344444433344457899999999999999999743
No 380
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.78 E-value=0.00089 Score=71.86 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=61.1
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC--------------
Q 005977 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------- 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~-----p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------- 347 (666)
...+++.||+|+|+.+++-.. ...... ...++....+.... .+.|+|||+||+||...
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~e-s~~~~~~i~~~~~~--~~~piILv~NK~DL~~~ki~~~~l~~~fp~y 297 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE-SLNIFETIVNNRVF--SNVSIILFLNKTDLLEEKVQVVSIKDYFLEF 297 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHH-HHHHHHHHHTCGGG--TTSEEEEEEECHHHHHHHTTTCCGGGTCTTC
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHH-HHHHHHHHhcchhh--CCCCEEEEEEChhhhhhhccccchhhcCccc
Confidence 457899999999999853110 111111 11222222111111 34689999999999621
Q ss_pred ---CCChHHHHHHHHHHHHhCCC---CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 348 ---QVSPTRLDRWVRHRAKAGGA---PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 ---~~~~~~L~~wl~~~~k~~g~---~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.........|+...+..+.. .+.-.++.+||+++.|+++++..+.+.
T Consensus 298 ~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 298 EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 12334556665444333211 112247899999999999999888653
No 381
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.74 E-value=0.0011 Score=65.69 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=33.0
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEeCC---ceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGILPA---KAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l~~---~~~liDTPGi~~ 462 (666)
.+|+|||.+||||||||++++...-... ..|-+..+.......... .+.|+||+|--.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~------~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNT------YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCC------cCCccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 4799999999999999999986532211 122222222221111222 456899999654
No 382
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.72 E-value=0.001 Score=72.69 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++.++|.+|+|||||+|+|+...
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHhhc
Confidence 578999999999999999998654
No 383
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.70 E-value=0.0013 Score=71.32 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSK 228 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~ 228 (666)
.|...++||.||+|| ||+|.|.+.+.+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~ 47 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGN 47 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccc
Confidence 477888999999995 5559999877533
No 384
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.68 E-value=0.00054 Score=74.98 Aligned_cols=64 Identities=27% Similarity=0.289 Sum_probs=34.5
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee-------------------------ecccccCCCCceeEEEEEeeEe-CCce
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV-------------------------SKLTEAPIPGTTLGILRIGGIL-PAKA 452 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~-------------------------~~lt~S~~PGTT~~~~~~~~~l-~~~~ 452 (666)
.++.++|.+|+|||||+|+|+...+... ........+|+|.+........ ...+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 5799999999999999999986421110 0011122578888764332222 2468
Q ss_pred EEEECCCCCC
Q 005977 453 KLYDTPGLLH 462 (666)
Q Consensus 453 ~liDTPGi~~ 462 (666)
.++||||...
T Consensus 87 ~iiDtpG~~~ 96 (435)
T 1jny_A 87 TIIDAPGHRD 96 (435)
T ss_dssp EECCCSSSTT
T ss_pred EEEECCCcHH
Confidence 8999999764
No 385
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.67 E-value=0.0013 Score=69.68 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=26.3
Q ss_pred hhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhc
Q 005977 385 RNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 385 ~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
..++..+.-....+..+.++|.+|+|||||+|.|++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344444433344556788999999999999999974
No 386
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.67 E-value=0.001 Score=72.10 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=27.7
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~ 441 (666)
.+|.++|.+|+|||||+|+|++.... .......+|+|.+.
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~ 50 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTD---THSEELRRGITIKI 50 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC-----CGGGGSCSSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc---cChhhhcCCcEEEE
Confidence 47899999999999999999864321 11222347777653
No 387
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.65 E-value=0.00041 Score=77.58 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=40.6
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
...|.++|.+|+|||||+|+|++... ..+..+|+|.+........ +..+.++||||...
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKV------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHH------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCC------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 35799999999999999999986431 1234577776643222112 23678999999754
No 388
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.61 E-value=0.00061 Score=75.39 Aligned_cols=63 Identities=29% Similarity=0.267 Sum_probs=31.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce-------------------------eecccccCCCCceeEEEEEeeEeC-Cce
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK-------------------------VSKLTEAPIPGTTLGILRIGGILP-AKA 452 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~-------------------------~~~lt~S~~PGTT~~~~~~~~~l~-~~~ 452 (666)
.+|.++|.+|+|||||+|+|+...+.. ..........|+|.+........+ ..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 579999999999999999997532210 000011124677877542221122 367
Q ss_pred EEEECCCCC
Q 005977 453 KLYDTPGLL 461 (666)
Q Consensus 453 ~liDTPGi~ 461 (666)
.++||||..
T Consensus 124 ~iiDtPGh~ 132 (467)
T 1r5b_A 124 SLLDAPGHK 132 (467)
T ss_dssp EECCCCC--
T ss_pred EEEECCCcH
Confidence 899999975
No 389
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.58 E-value=0.0017 Score=70.32 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=26.1
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~ 441 (666)
..++.++|.+|+|||||+|+|++.... .......+|+|.+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~ 48 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTD---RHSEELRRGISIRL 48 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCC---C-------CCCCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc---cCcccccCCcEEEe
Confidence 357899999999999999999864321 11122447777653
No 390
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.57 E-value=0.0011 Score=70.93 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=62.4
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCC--------------
Q 005977 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPS-------------- 347 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~-----p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk-------------- 347 (666)
...+++.||+|+|+.+++... ..+..+ ...++....+.... .+.|+|||+||+||...
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e-~~~~~~~i~~~~~~--~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~ 289 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLFDSICNNKWF--TDTSIILFLNKKDLFEEKIKKSPLTICYPEY 289 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHH-HHHHHHHHHTCGGG--TTSEEEEEEECHHHHHHHHTTSCGGGTCTTC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHH-HHHHHHHHHcCccc--cCCcEEEEEECcCchhhhccccchhhccccc
Confidence 457899999999999854200 011111 12233322211111 34689999999999621
Q ss_pred --CCChHHHHHHHHHHHHhCCC---CCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 348 --QVSPTRLDRWVRHRAKAGGA---PKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 348 --~~~~~~L~~wl~~~~k~~g~---~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.........|+......+.. .+--.++.+||+++.|+++++..+.+.
T Consensus 290 ~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp CSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 12344566676554433321 012247889999999999999888653
No 391
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.55 E-value=0.0012 Score=74.42 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=35.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--ee--------ccccc------CCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--VS--------KLTEA------PIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~~--------~lt~S------~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
.+|+++|.+|+|||||+|+|+...+.. .+ ..+++ ..+|+|.......... +..+.|+||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 589999999999999999998642211 00 01111 2455554322111112 2367899999986
Q ss_pred CC
Q 005977 462 HP 463 (666)
Q Consensus 462 ~~ 463 (666)
..
T Consensus 94 df 95 (529)
T 2h5e_A 94 DF 95 (529)
T ss_dssp TC
T ss_pred hH
Confidence 53
No 392
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.54 E-value=0.001 Score=68.42 Aligned_cols=64 Identities=31% Similarity=0.378 Sum_probs=33.9
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeeccccc--CCCCcee-EEEEEe---eEeCCceEEEECCCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEA--PIPGTTL-GILRIG---GILPAKAKLYDTPGLLHP 463 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S--~~PGTT~-~~~~~~---~~l~~~~~liDTPGi~~~ 463 (666)
+++++|.+|+|||||+|.|++......+.+... ..+.++. ..+.+. ..+....+++||||+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 689999999999999999998654332222111 1222221 111111 012236789999999754
No 393
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.44 E-value=0.0024 Score=69.80 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.8
Q ss_pred ccEEEEccCCCChhHHHHhhhcccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEG 423 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~ 423 (666)
.+|++||.+|||||||+|+|++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3579999999999999999997643
No 394
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.42 E-value=0.0017 Score=75.35 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=34.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccccce--eec----ccccC------CCCceeEEEEEeeEe-CCceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVK--VSK----LTEAP------IPGTTLGILRIGGIL-PAKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~--~~~----lt~S~------~PGTT~~~~~~~~~l-~~~~~liDTPGi~~ 462 (666)
.+|.|+|.+|+|||||+|+|+...+.. .+. .+++. ..|+|.........+ ...+.|+||||...
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 479999999999999999998532211 000 01111 346665533222212 23678999999865
No 395
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.19 E-value=4e-05 Score=82.38 Aligned_cols=24 Identities=38% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCCCCCCcccc
Q 005977 107 PVCPGCGIFMQDKDPNLPGYYKQK 130 (666)
Q Consensus 107 ~~c~~c~~~~~~~d~~~~g~~~~~ 130 (666)
..|+|||..||++||+.|||--..
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~ 28 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPAS 28 (368)
T ss_dssp ------------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCChH
Confidence 469999999999999999997554
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.16 E-value=0.0033 Score=66.23 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=57.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcCC------------Ccc
Q 005977 333 PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAGP------------RGN 400 (666)
Q Consensus 333 kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~~------------~~~ 400 (666)
.| .+|++|-|..++. +.+ ..++.+.+ |+.++..+...+..|..+|...+.+ +..
T Consensus 81 ~P-~IIltrg~~~pee-----lie----~A~~~~IP----VL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~ 146 (314)
T 1ko7_A 81 TP-AIIVTRDLEPPEE-----LIE----AAKEHETP----LITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVG 146 (314)
T ss_dssp CC-CEEECTTCCCCHH-----HHH----HHHHTTCC----EEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEE
T ss_pred CC-EEEEeCCCCCCHH-----HHH----HHHHCCCe----EEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEE
Confidence 45 7789999987542 222 23455765 8888999999999999999875432 456
Q ss_pred EEEEccCCCChhHHHHhhhcc
Q 005977 401 VWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 401 v~vvG~~NvGKSTLIN~L~~~ 421 (666)
++++|.+|+||||+.+.|+.+
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHhc
Confidence 899999999999999999875
No 397
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.11 E-value=0.0045 Score=66.88 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.8
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..+|.++|.+|+|||||+|+|++.
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999874
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.00 E-value=0.0038 Score=65.01 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.3
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+|+++|.+|||||||+|+|++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 399
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.94 E-value=0.0027 Score=69.62 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=37.2
Q ss_pred EEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCe
Q 005977 293 VVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNG 372 (666)
Q Consensus 293 vVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~ 372 (666)
+|++|+|+.+.. . ..+..++..|. .+.|+|+|+||+|.+++.. ...+...++......|++
T Consensus 151 ~v~fI~d~~~~l--~--~~Dieilk~L~----------~~~~vI~Vi~KtD~Lt~~E-~~~l~~~I~~~L~~~gi~---- 211 (427)
T 2qag_B 151 CLYFIAPTGHSL--K--SLDLVTMKKLD----------SKVNIIPIIAKADAISKSE-LTKFKIKITSELVSNGVQ---- 211 (427)
T ss_dssp EEEEECCCC-----C--HHHHHHHHHTC----------SCSEEEEEESCGGGSCHHH-HHHHHHHHHHHHBTTBCC----
T ss_pred EEEEEeCCCCCC--C--HHHHHHHHHHh----------hCCCEEEEEcchhccchHH-HHHHHHHHHHHHHHcCCc----
Confidence 578888887632 2 23344545443 3468999999999997654 122233333222334443
Q ss_pred EEEEecc
Q 005977 373 VYLVSAR 379 (666)
Q Consensus 373 V~~VSAk 379 (666)
|+++|.-
T Consensus 212 I~~is~~ 218 (427)
T 2qag_B 212 IYQFPTD 218 (427)
T ss_dssp CCCCC--
T ss_pred EEecCCC
Confidence 7888853
No 400
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.91 E-value=0.0032 Score=74.63 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.6
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+|+|+|.+|+|||||+|+|+...
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~ 43 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRA 43 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998754
No 401
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.89 E-value=0.0072 Score=70.25 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.6
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee--ec----ccccC------CCCceeEEEEEeeEeC--------CceEEEECC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--SK----LTEAP------IPGTTLGILRIGGILP--------AKAKLYDTP 458 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~--~~----lt~S~------~PGTT~~~~~~~~~l~--------~~~~liDTP 458 (666)
.+|.|+|..|+|||||+++|+...+... +. .+... ..|+|.........+. ..+.|+|||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 4799999999999999999985422110 00 01111 3566665432222222 357899999
Q ss_pred CCCC
Q 005977 459 GLLH 462 (666)
Q Consensus 459 Gi~~ 462 (666)
|...
T Consensus 91 G~~d 94 (704)
T 2rdo_7 91 GHVD 94 (704)
T ss_pred Cccc
Confidence 9865
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.00087 Score=65.16 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..+.++|.+|||||||+|+|+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 403
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.78 E-value=0.0036 Score=71.47 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=29.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccceee-----cc----cccCCCCceeEEEEEeeEeC------CceEEEECCCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKVS-----KL----TEAPIPGTTLGILRIGGILP------AKAKLYDTPGLLH 462 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~~-----~l----t~S~~PGTT~~~~~~~~~l~------~~~~liDTPGi~~ 462 (666)
.++.++|.+|+|||||+++|+...+.... .. ......|+|.........+. ..+.|+||||...
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 37899999999999999999864322110 00 01123566655322221121 2467999999754
No 404
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.72 E-value=0.0043 Score=75.42 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=34.3
Q ss_pred ccEEEEccCCCChhHHHHhhhccccc----------eeecccccCCCCceeEEEEEeeEe-CCceEEEECCCCC
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGV----------KVSKLTEAPIPGTTLGILRIGGIL-PAKAKLYDTPGLL 461 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~----------~~~~lt~S~~PGTT~~~~~~~~~l-~~~~~liDTPGi~ 461 (666)
.+|.++|.+|+|||||+|+|++.... ..........+|+|.+...+.... ...+.++||||..
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 57899999999999999999864110 001112224577777643222111 2468999999964
No 405
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.71 E-value=0.0026 Score=72.62 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
..|.++|.+|+|||||+|+|++..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 479999999999999999998653
No 406
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.70 E-value=0.00082 Score=72.14 Aligned_cols=24 Identities=33% Similarity=0.683 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCCCCCCcccc
Q 005977 107 PVCPGCGIFMQDKDPNLPGYYKQK 130 (666)
Q Consensus 107 ~~c~~c~~~~~~~d~~~~g~~~~~ 130 (666)
..|+|||..+|++||+.|||--..
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~ 28 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKS 28 (369)
T ss_dssp ------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChH
Confidence 469999999999999999997554
No 407
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.68 E-value=0.0037 Score=71.37 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=18.8
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.++.++|.+|+|||||+|+|+..
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999864
No 408
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.23 E-value=0.005 Score=59.94 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=38.8
Q ss_pred CcEEEEEeCCCCCCCC-CChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhh
Q 005977 333 PKLVLVGTKVDLLPSQ-VSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 333 kpvILVlNKiDLLpk~-~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.|.++|+||+|+.+.. .....+..+++. .+. ...++.+||++|.|+++|++.|.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR----INP--DAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH----HCT--TSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH----hCC--CCeEEEEEecCCCCHHHHHHHHHHH
Confidence 3679999999997532 233334444432 111 2348999999999999999988754
No 409
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.20 E-value=0.029 Score=56.08 Aligned_cols=99 Identities=11% Similarity=-0.055 Sum_probs=56.0
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCC-CCCCCCCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKV-DLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKi-DLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
..++|.||||||+.|..- .. ....+ ..|......... -.+.|++|.+||. |+ +.......+.+.+.- ....
T Consensus 123 y~~TdglIfVVDSsD~~R-~e--ak~EL-~eL~~mL~ee~~-L~gapLLVlANKqqDl-p~Ams~~EI~e~L~L--~~l~ 194 (227)
T 3l82_B 123 CEVVDGFIYVANAEAHKR-HE--WQDEF-SHIMAMTDPAFG-SSGRPLLVLSCISQGD-VKRMPCFYLAHELHL--NLLN 194 (227)
T ss_dssp HHHCSEEEEEEECBTTCC-CC--HHHHH-HHHHHHSCTTSS-CSCSCEEEEEEESSTT-SCBCCHHHHHHHTTG--GGGC
T ss_pred hcCCCEEEEEeccccHhH-HH--HHHHH-HHHHHHhcchhh-hCCCeEEEEeCCCcCc-cCCCCHHHHHHHcCC--cCCC
Confidence 356899999999998642 12 22222 112111110000 0245888888996 66 444443333332210 0111
Q ss_pred CCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 367 APKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
+.=.|..+||++|.|+.+-++.|.+.+.
T Consensus 195 --R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 195 --HPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp --SCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred --CCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 2235899999999999999999876543
No 410
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.14 E-value=0.024 Score=59.95 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=61.0
Q ss_pred cccccCEEEEEEecCCCCC-----CCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC-------------
Q 005977 287 GNANAGVVVMVVDCVDFDG-----MFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ------------- 348 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~g-----s~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~------------- 348 (666)
...+++.|++|+|+.+++- +...+..+. ..++....+.... .+.|++|++||+||....
T Consensus 187 yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~--~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y 263 (327)
T 3ohm_A 187 CFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWF--QNSSVILFLNKKDLLEEKIMYSHLVDYFPEY 263 (327)
T ss_dssp GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGG--TTCEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred HhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhcc--CCceEEEEEECchhhhhhhccchHhhhchhc
Confidence 4568999999998873211 111122221 1233322211111 346899999999996421
Q ss_pred ----CChHHHHHHHHHHHHhCCCC--CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 349 ----VSPTRLDRWVRHRAKAGGAP--KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 349 ----~~~~~L~~wl~~~~k~~g~~--~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
...+....|+.......... +--..+++||+.+.+++.++..+.+.
T Consensus 264 ~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 264 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 23344566665554433211 11136889999999999999888753
No 411
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.97 E-value=0.016 Score=64.85 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.5
Q ss_pred ccEEEEccCCCChhHHHHhhh
Q 005977 399 GNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~ 419 (666)
..|+++|.+||||||++|+|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999998
No 412
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.85 E-value=0.013 Score=62.49 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=55.9
Q ss_pred cccccCEEEEEEecCCCCCC-----CcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC------------
Q 005977 287 GNANAGVVVMVVDCVDFDGM-----FPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV------------ 349 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs-----~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~------------ 349 (666)
...+++.+|+|+|+.+++-. ...... ....++........ ..+.|+|||+||+||.....
T Consensus 203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~-~~~~~~~~i~~~~~--~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp 279 (354)
T 2xtz_A 203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPC--FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFR 279 (354)
T ss_dssp GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH-HHHHHHHHHHTCGG--GSSCEEEEEEECHHHHHHHTTTSCGGGSGGGT
T ss_pred HhCCCCEEEEEEECcccccccccccchhHHH-HHHHHHHHHHhccc--cCCCeEEEEEECcchhhhhccccccccccccc
Confidence 45689999999999833211 011222 12222322211111 13568999999999853211
Q ss_pred ----------ChHHHHHHHHHHHHh----CCC----CCCCeEEEEecccCcchhhHHHHHHh
Q 005977 350 ----------SPTRLDRWVRHRAKA----GGA----PKLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 350 ----------~~~~L~~wl~~~~k~----~g~----~~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
.......|++..... ... .+.-.++.+||+++.||++++..+.+
T Consensus 280 ~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 280 DYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 012334443332111 100 01112588999999999999988765
No 413
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.012 Score=57.18 Aligned_cols=26 Identities=42% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCCccEEEEccCCCChhHHHHhhhcc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+.+..+.|+|.+|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999864
No 414
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.72 E-value=0.0094 Score=64.83 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=56.6
Q ss_pred cccccCEEEEEEecCCCCCCC-----cHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC------------
Q 005977 287 GNANAGVVVMVVDCVDFDGMF-----PKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV------------ 349 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~gs~-----p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~------------ 349 (666)
...+++.||+|+|+.+++-.. ..... ....++........ ..+.|+|||+||+||.....
T Consensus 237 yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~-e~~~~~~~i~~~~~--~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp 313 (402)
T 1azs_C 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQ-EALNLFKSIWNNRW--LRTISVILFLNKQDLLAEKVLAGKSKIEDYFP 313 (402)
T ss_dssp GTTTCCEEEEEEETTGGGCBCTTTSCSBHHH-HHHHHHHHHHTCTT--CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCG
T ss_pred hccCCCEEEEEEECcccccccccccccchHH-HHHHHHHHHHhccc--CCCCeEEEEEEChhhhhhhhcccccchhhccc
Confidence 456899999999999842110 11111 12223332211101 13468999999999852110
Q ss_pred -------------------ChHHHHHHHHHHHHhC----CCC-CCCeEEEEecccCcchhhHHHHHHhh
Q 005977 350 -------------------SPTRLDRWVRHRAKAG----GAP-KLNGVYLVSARKDLGVRNLLAFIKEL 394 (666)
Q Consensus 350 -------------------~~~~L~~wl~~~~k~~----g~~-~~~~V~~VSAkkg~Gv~eLl~~I~~~ 394 (666)
.......|++..+... +.. +.-.++.+||+++.||+.++..+.+.
T Consensus 314 ~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 314 EFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp GGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence 0123344443221111 000 01136789999999999999888653
No 415
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.65 E-value=0.014 Score=57.33 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=28.5
Q ss_pred CccEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI 441 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~ 441 (666)
+..++++|.+|+|||||+|.|++..... -....+.|||..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~----~~~~vs~TTR~p 58 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEK----FVYPVPYTTRPP 58 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTT----EECCCCEECSCC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCcc----EEeeecccccCC
Confidence 3467889999999999999999654211 113556778754
No 416
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.42 E-value=0.03 Score=59.51 Aligned_cols=103 Identities=10% Similarity=0.107 Sum_probs=59.0
Q ss_pred cccccCEEEEEEecCCCCC------CCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCC------------
Q 005977 287 GNANAGVVVMVVDCVDFDG------MFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQ------------ 348 (666)
Q Consensus 287 a~~~aDvVL~VVDa~Df~g------s~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~------------ 348 (666)
...+++.||+|+|+.+++- +.. +..+. ..++......... .+.|+|||+||+||....
T Consensus 181 yy~~a~~iIfV~diS~ydq~l~e~~~~n-r~~es-~~~~~~i~~~~~~--~~~piiLv~NK~DL~~eki~~~~l~~~fp~ 256 (340)
T 4fid_A 181 FFSDVDCAIFVTSLAEYDMKLYEDGNTS-RLTES-IAVFKDIMTNEFL--KGAVKLIFLNKMDLFEEKLTKVPLNTIFPE 256 (340)
T ss_dssp TSCSCSEEEEEEEGGGTTCBCC--CCSB-HHHHH-HHHHHHHHHCGGG--TTSEEEEEEECHHHHHHHHHHSCGGGTCTT
T ss_pred HhccCCEEEEEEECCccccccccccccc-hHHHH-HHHHHHHhhhhcc--CCCeEEEEEECchhhhhhcCcchHHHhhhh
Confidence 4568999999999985421 111 12211 1222222111111 346899999999986311
Q ss_pred ----CChHHHHHHHHHHH------HhCCCC-------------CCCeEEEEecccCcchhhHHHHHHh
Q 005977 349 ----VSPTRLDRWVRHRA------KAGGAP-------------KLNGVYLVSARKDLGVRNLLAFIKE 393 (666)
Q Consensus 349 ----~~~~~L~~wl~~~~------k~~g~~-------------~~~~V~~VSAkkg~Gv~eLl~~I~~ 393 (666)
...+....|+.... ...... +.--.+++||+...+++.++..+.+
T Consensus 257 y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~ 324 (340)
T 4fid_A 257 YTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVD 324 (340)
T ss_dssp CCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHH
Confidence 12344556665544 111100 0123689999999999999988875
No 417
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.40 E-value=0.024 Score=60.02 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=33.8
Q ss_pred cEEEEccCCCChhHHHHhhhccccceeecccccCCCCceeEE--EEEeeEeCCceEEEECCCCCC
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKEGVKVSKLTEAPIPGTTLGI--LRIGGILPAKAKLYDTPGLLH 462 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~~~~~~~lt~S~~PGTT~~~--~~~~~~l~~~~~liDTPGi~~ 462 (666)
+++++|.+|||||||++.+....... . ....+.|.++ ..+. ..-.+.|.||||--+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~----~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-D----TLYLESTSNPSLEHFS--TLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-G----GTTCCCCCSCCCEEEC--SSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-c----cceecCeeeeeeEEEc--cEEEEEEEECCCchh
Confidence 47899999999999999887542111 0 0112223221 1221 123678999999754
No 418
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.39 E-value=0.017 Score=56.01 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..+.++|.+|+|||||+|.|.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345577899999999999999998753
No 419
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.37 E-value=0.07 Score=56.51 Aligned_cols=99 Identities=17% Similarity=0.095 Sum_probs=53.4
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGA 367 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~ 367 (666)
..+++.+++|+|+.+. .. .....+.+++..... ...+.|++||+||+||.+............++..+++--
T Consensus 70 yr~a~~~IlV~Ditd~--~~--~~~~~l~~~l~~~~~----~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~ 141 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE--YI--NAITNLAMIIEYAYK----VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE 141 (331)
T ss_dssp HTTCSEEEEECCCSSC--TT--HHHHHHHHHHHHHHH----HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCEEEEEEECCch--HH--HHHHHHHHHHHHHhh----cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh
Confidence 3568999999999984 11 222333233322100 113468999999999986532110011111111222211
Q ss_pred C---C-CCeEEEEecccCcchhhHHHHHHhhc
Q 005977 368 P---K-LNGVYLVSARKDLGVRNLLAFIKELA 395 (666)
Q Consensus 368 ~---~-~~~V~~VSAkkg~Gv~eLl~~I~~~l 395 (666)
. . --..+.+||+. .++.+.+..|...+
T Consensus 142 ~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 142 LGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp SSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred hcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 0 0 11367889987 58988888887543
No 420
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.34 E-value=0.43 Score=52.40 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=42.4
Q ss_pred cccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCC
Q 005977 289 ANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAP 368 (666)
Q Consensus 289 ~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~ 368 (666)
...|.+++|+|+.. |.. ... ....+.. ......+|+||+|...+.. .+... ....+.|
T Consensus 211 ~~pd~vlLVvDA~~--gq~---a~~-~a~~f~~---------~~~i~gVIlTKlD~~~~gG---~~ls~----~~~~g~P 268 (443)
T 3dm5_A 211 IHPHEVILVIDGTI--GQQ---AYN-QALAFKE---------ATPIGSIIVTKLDGSAKGG---GALSA----VAATGAP 268 (443)
T ss_dssp HCCSEEEEEEEGGG--GGG---HHH-HHHHHHH---------SCTTEEEEEECCSSCSSHH---HHHHH----HHTTCCC
T ss_pred hcCceEEEEEeCCC--chh---HHH-HHHHHHh---------hCCCeEEEEECCCCccccc---HHHHH----HHHHCCC
Confidence 34689999999986 321 111 2222222 2345679999999875422 12222 2345655
Q ss_pred CCCeEEEEecccCcchhhHH
Q 005977 369 KLNGVYLVSARKDLGVRNLL 388 (666)
Q Consensus 369 ~~~~V~~VSAkkg~Gv~eLl 388 (666)
|.+++. |.++++|.
T Consensus 269 ----I~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 269 ----IKFIGT--GEKIDDIE 282 (443)
T ss_dssp ----EEEEEC--SSSTTCEE
T ss_pred ----EEEEEc--CCChHHhh
Confidence 778875 88877664
No 421
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.25 E-value=0.028 Score=64.84 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..++.++|.+|+|||||+++|++.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCChHHHHHHHHHHh
Confidence 357899999999999999999854
No 422
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.21 E-value=0.015 Score=63.11 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=18.7
Q ss_pred CCceeeeccCCCchH-HHHHHHhhhhhhHHHHHHHH
Q 005977 201 DGFTPAGVGYGNITE-ELVERSKKKKLSKAERKKKA 235 (666)
Q Consensus 201 ~G~~~a~vGrpNvg~-tlLn~l~~~Kvs~~~rK~~a 235 (666)
.|+..++||+||+|+ ||+|++.+.+. .++..+++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~t 55 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFC 55 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCcc
Confidence 366778899999995 55599999875 44444444
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.13 E-value=0.01 Score=59.14 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred ccEEEEccCCCChhHHHHhhh
Q 005977 399 GNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~ 419 (666)
..++++|.+|||||||++.|.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 356789999999999999997
No 424
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.00 E-value=0.022 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||+|.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999864
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.83 E-value=0.012 Score=57.17 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..+.++|.+|||||||+|+|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.71 E-value=0.012 Score=64.52 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..|+++|.+||||||+++.|...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 427
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.52 E-value=0.032 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.9
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
..++++|.+|+|||||+|.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999998753
No 428
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.47 E-value=0.13 Score=53.77 Aligned_cols=96 Identities=10% Similarity=-0.076 Sum_probs=55.3
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHH---HHHHHHhhhhhhhhcCCCcEEEEEeCC-CCCCCCCChHHHHHHHHHHHH
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSL---FKKLEEAKDDAKLSKKLPKLVLVGTKV-DLLPSQVSPTRLDRWVRHRAK 363 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L---~~~L~~~~~~~~~~~~~kpvILVlNKi-DLLpk~~~~~~L~~wl~~~~k 363 (666)
..++|.||||||+.|..-. . ..+.+ ...|.. ... ..+.|++|.+||. |+ +.......+.+.+.- .
T Consensus 208 y~~tdglIfVVDSsDreRl-e--ak~EL~eL~~mL~e----~~~-l~~apLLVfANKkQDl-p~Ams~~EI~e~L~L--~ 276 (312)
T 3l2o_B 208 CEVVDGFIYVANAEAHKRH-E--WQDEFSHIMAMTDP----AFG-SSGRPLLVLSCISQGD-VKRMPCFYLAHELHL--N 276 (312)
T ss_dssp HHHCSEEEECCBCBTTCCC-C--HHHHHHHHHHHHCH----HHH-CTTCCEEEEEEESSTT-SCBCCHHHHHHHTTG--G
T ss_pred hcCCCEEEEEecCCcHhHH-H--HHHHHHHHHHHhcc----hhh-cCCCeEEEEeCCcccc-cCCCCHHHHHHHcCC--c
Confidence 4568999999999986532 2 22222 122211 000 0345888888974 77 333333333332110 0
Q ss_pred hCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 364 AGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 364 ~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
... +.=.|..+||.+|.|+.+=++.|.+...
T Consensus 277 ~l~--r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 277 LLN--HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGC--SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCC--CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 111 2235899999999999999998876543
No 429
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.19 E-value=0.054 Score=61.84 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++|||.+|+|||||+|+|.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998763
No 430
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.13 E-value=0.057 Score=58.93 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCCCCCCCeEEEEecccCcchhhHHHHHHhhcC
Q 005977 332 LPKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGGAPKLNGVYLVSARKDLGVRNLLAFIKELAG 396 (666)
Q Consensus 332 ~kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g~~~~~~V~~VSAkkg~Gv~eLl~~I~~~l~ 396 (666)
..++|+|+||+|++.+... ..+...+.......+.+ ++.+||+++.+++++...|...+|
T Consensus 167 ~v~iIlVinK~Dll~~~ev-~~~k~~i~~~~~~~~i~----~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEEC-QQFKKQIMKEIQEHKIK----IYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TSEEEEEEESTTSSCHHHH-HHHHHHHHHHHHHHTCC----CCCCC-----------------CC
T ss_pred cCcEEEEEEcccCccHHHH-HHHHHHHHHHHHHcCCe----EEeCCCCCCcCHHHHHHHHHhhCC
Confidence 4589999999999864331 11112222333344543 788999999999987777766543
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.08 E-value=0.047 Score=55.62 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+++.+. .+++..++++|.+|+|||||++.|++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 4455444 456678899999999999999999864
No 432
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.08 E-value=0.04 Score=54.62 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=22.8
Q ss_pred hcCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 394 LAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 394 ~l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++++.-++++|.+|+|||||++.|++..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34566678899999999999999998753
No 433
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.85 E-value=0.047 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCccEEEEccCCCChhHHHHhhhcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|++.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4557889999999999999999874
No 434
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.74 E-value=0.051 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCccEEEEccCCCChhHHHHhhhcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+..++++|.+|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999864
No 435
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.60 E-value=0.049 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.2
Q ss_pred ccEEEEccC---------CCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQ---------NAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~---------NvGKSTLIN~L~~~ 421 (666)
.+|++||.+ |||||||+|+|++.
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 589999999 99999999999973
No 436
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.55 E-value=0.047 Score=52.80 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred cchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+|+..|=..+..-.+++..+.++|.+|+|||||++.|++.
T Consensus 9 tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 9 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3565554444444455667889999999999999999864
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.43 E-value=0.085 Score=55.20 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=29.0
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++-+.-..+++..++|+|.+|+|||||++.|++-.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3445554456777789999999999999999998653
No 438
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.42 E-value=0.06 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.0
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446789999999999999999864
No 439
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.28 E-value=0.056 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
-|+|+|.+||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998653
No 440
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.26 E-value=0.057 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 441
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.19 E-value=0.14 Score=56.47 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=17.5
Q ss_pred cEEEEccCCCChhHHHHhhh
Q 005977 400 NVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~ 419 (666)
-|.|+|..++|||+|+|.|+
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 45689999999999999776
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.17 E-value=0.083 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999998754
No 443
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.98 E-value=0.11 Score=56.86 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=46.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKL-PKLVLVGTKVDLLPSQVSPTRLDRWVRHRAKAGG 366 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~-kpvILVlNKiDLLpk~~~~~~L~~wl~~~~k~~g 366 (666)
...+|.+++|+|+.. |. +... ....+.. .. +...+|+||+|...+.. .+..+ ....+
T Consensus 208 ~~~~d~vllVvda~~--g~---~~~~-~~~~~~~---------~~~~i~gvVlnK~D~~~~~g---~~l~~----~~~~~ 265 (432)
T 2v3c_C 208 ITNPDEIILVIDGTI--GQ---QAGI-QAKAFKE---------AVGEIGSIIVTKLDGSAKGG---GALSA----VAETK 265 (432)
T ss_dssp SSCCSEEEEEEEGGG--GG---GHHH-HHHHHHT---------TSCSCEEEEEECSSSCSTTH---HHHHH----HHHSS
T ss_pred HhcCcceeEEeeccc--cH---HHHH-HHHHHhh---------cccCCeEEEEeCCCCccchH---HHHHH----HHHHC
Confidence 346899999999976 21 1111 1121211 22 23889999999864321 12222 23344
Q ss_pred CC--------------CCCeEEEEecccCcc-hhhHHHHHHhhcC
Q 005977 367 AP--------------KLNGVYLVSARKDLG-VRNLLAFIKELAG 396 (666)
Q Consensus 367 ~~--------------~~~~V~~VSAkkg~G-v~eLl~~I~~~l~ 396 (666)
.| .+....++|+..|.| +..|++.+.+..+
T Consensus 266 ~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 266 APIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp CCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred CCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33 122234567777777 7777766655443
No 444
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.78 E-value=0.081 Score=56.32 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHHhhcCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 389 AFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 389 ~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+.+.-..+.+..++|+|.+|+|||||+|+|++..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4444344567789999999999999999998753
No 445
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.62 E-value=0.049 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.2
Q ss_pred hcCCCccEEEEccCCCChhHHHHhhh
Q 005977 394 LAGPRGNVWVIGAQNAGKSTLINTFA 419 (666)
Q Consensus 394 ~l~~~~~v~vvG~~NvGKSTLIN~L~ 419 (666)
-.+++..++++|.+|+|||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34556678899999999999999988
No 446
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.57 E-value=0.11 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998754
No 447
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.55 E-value=0.082 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998654
No 448
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.54 E-value=0.091 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.1
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+..++++|.+|+|||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45578999999999999999998643
No 449
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.53 E-value=0.091 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..+.++|.+|+|||||++.|.+-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45567899999999999999998754
No 450
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.38 E-value=0.11 Score=55.49 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.0
Q ss_pred CCccEEEEccCCCChhHHHHhhhcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+++.++|+|.+|+|||||+++|++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999864
No 451
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.32 E-value=0.12 Score=52.69 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578899999999999999998754
No 452
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.29 E-value=0.094 Score=55.21 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 387 LLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 387 Ll~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++.+.-..+.+..++++|.+|+|||||+|.|++..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445444444456789999999999999999998753
No 453
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.24 E-value=0.098 Score=49.78 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCccEEEEccCCCChhHHHHhhhcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+..++++|.+|+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999864
No 454
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.20 E-value=0.095 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578899999999999999998753
No 455
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.11 E-value=0.1 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+.-++++|.+|+|||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34467889999999999999998653
No 456
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.02 E-value=0.14 Score=49.36 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred hhHHHHHHhhc-CCCccEEEEccCCCChhHHHHhhhcc
Q 005977 385 RNLLAFIKELA-GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 385 ~eLl~~I~~~l-~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+.|.+.|.... +.+..+.++|.+|+|||||++.|.+.
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 23346789999999999999999753
No 457
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.02 E-value=0.11 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578899999999999999998754
No 458
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.98 E-value=0.13 Score=52.48 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 445578899999999999999998753
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.94 E-value=0.11 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..+.++|.+|+|||||++.|.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998753
No 460
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.94 E-value=0.13 Score=52.17 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445578899999999999999998754
No 461
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.88 E-value=0.12 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..++++|.+|+|||||++.|++..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998754
No 462
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.88 E-value=0.12 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578899999999999999998754
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.84 E-value=0.11 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445678899999999999999998753
No 464
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.80 E-value=0.11 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||+++|++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.80 E-value=0.14 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445578899999999999999998754
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.65 E-value=0.22 Score=45.38 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=31.4
Q ss_pred hhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 384 v~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..+.+.+.........|++.|.+|+|||++..+|...
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 56677777776667778999999999999999999754
No 467
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.60 E-value=0.13 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..+.++|.+|+|||||++.|.+-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45578899999999999999998753
No 468
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.60 E-value=0.13 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..++++|.+|+|||||++.|++-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998753
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.59 E-value=0.2 Score=45.60 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.9
Q ss_pred hhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 384 VRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 384 v~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..+.+.+.........+++.|.+|+|||++..+|...
T Consensus 13 ~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 13 IQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45666777666666678999999999999999999764
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.59 E-value=0.12 Score=52.61 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCccEEEEccCCCChhHHHHhhhcc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+++..++++|.+|+|||||++.|++-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44557889999999999999999975
No 471
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=90.54 E-value=0.11 Score=58.74 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred ccEEEEccCCCChhHHHHhhhccc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++.|||....|||||.-+|+...
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~t 55 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFG 55 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhc
Confidence 589999999999999999997543
No 472
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.52 E-value=0.1 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.5
Q ss_pred CccEEEEccCCCChhHHHHhhhc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
+.-++++|.+|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 44678999999999999998663
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.42 E-value=0.16 Score=51.77 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345578899999999999999998754
No 474
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.40 E-value=0.11 Score=52.99 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..+.++|.+|+|||||++.|.+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45578899999999999999998754
No 475
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.40 E-value=0.11 Score=54.31 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.8
Q ss_pred cCCCccEEEEccCCCChhHHHHhhhccc
Q 005977 395 AGPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 395 l~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.+++..+++||.+|+|||||++.|++-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3456688999999999999999998754
No 476
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.32 E-value=0.6 Score=47.61 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=31.9
Q ss_pred ccccCEEEEEEecCCCCCCCcHHHHHHHHHHHHHhhhhhhhhcCCCcEEEEEeCCCCCCCCC
Q 005977 288 NANAGVVVMVVDCVDFDGMFPKRAAKSLFKKLEEAKDDAKLSKKLPKLVLVGTKVDLLPSQV 349 (666)
Q Consensus 288 ~~~aDvVL~VVDa~Df~gs~p~~id~~L~~~L~~~~~~~~~~~~~kpvILVlNKiDLLpk~~ 349 (666)
+..+.+.++++|-... +..+ .+..++..|.. . .++|+|+||+|.+.+..
T Consensus 109 iaRal~~lllldep~~-gL~~--lD~~~l~~L~~---------~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 109 DTRVHCCLYFISPTGH-SLRP--LDLEFMKHLSK---------V-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp CCSCCEEEEEECCCSS-SCCH--HHHHHHHHHHT---------T-SEEEEEETTGGGSCHHH
T ss_pred hheeeeeeEEEecCCC-cCCH--HHHHHHHHHHh---------c-CcEEEEEeccccCCHHH
Confidence 4556888899985421 2223 34455555543 3 58999999999997654
No 477
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.28 E-value=0.11 Score=48.21 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=25.9
Q ss_pred hHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 386 NLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 386 eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.++..+... .+..++++|.+|+|||||+++|.+.
T Consensus 26 ~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 26 ELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp HHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444 4557899999999999999999864
No 478
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.26 E-value=0.12 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCccEEEEccCCCChhHHHHhhhcc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
++..++++|.+|+|||||++.|++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999999974
No 479
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.16 E-value=0.17 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.5
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||++.|++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 557889999999999999999875
No 480
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.15 E-value=0.21 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.6
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..+++.|.+|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 481
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.15 E-value=0.12 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..+.++|.+|+|||||++.|.+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45578899999999999999998754
No 482
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.13 E-value=0.11 Score=49.98 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=27.7
Q ss_pred cchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+|+..|-+.+..-++++..++++|.+|+|||||++.|+..
T Consensus 7 tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3555554433323445557789999999999999999853
No 483
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.13 E-value=0.16 Score=48.70 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=29.2
Q ss_pred cchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhc
Q 005977 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
+|+..|=+.+..-++.+.-+.++|.+|+|||||++.|+.
T Consensus 4 tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 4 TGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555555543455666788999999999999999986
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.11 E-value=0.16 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..++++|.+|+|||||++.|++..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45578899999999999999998754
No 485
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.02 E-value=0.13 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999999875
No 486
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=90.01 E-value=0.094 Score=60.17 Aligned_cols=66 Identities=24% Similarity=0.235 Sum_probs=38.7
Q ss_pred ccEEEEccCCCChhHHHHhhhcccccee--e----cccccCC------CCceeEEEEEeeEe-CCceEEEECCCCCCCc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKKEGVKV--S----KLTEAPI------PGTTLGILRIGGIL-PAKAKLYDTPGLLHPH 464 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~~~~~~--~----~lt~S~~------PGTT~~~~~~~~~l-~~~~~liDTPGi~~~~ 464 (666)
.+|.|||....|||||.-+|+...+... + ..++.+. .|.|.........+ +..+.||||||-....
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 3799999999999999999985433211 0 0111111 14443321111112 2467899999987654
No 487
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.00 E-value=0.14 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.6
Q ss_pred ccEEEEccCCCChhHHHHhhhcc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..++++|.+|+|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 488
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.99 E-value=0.14 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred CccEEEEccCCCChhHHHHhhhcc
Q 005977 398 RGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 398 ~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+..++++|.+|+|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999999764
No 489
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.92 E-value=0.21 Score=51.69 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=26.1
Q ss_pred hhHHHHHHhh----cCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 385 RNLLAFIKEL----AGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 385 ~eLl~~I~~~----l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+.|.+.|..+ ...+..|.|+|.+|+|||||.+.|.+.
T Consensus 14 ~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 14 EFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443 223446789999999999999998754
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.84 E-value=0.16 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCccEEEEccCCCChhHHHHhhhccc
Q 005977 397 PRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 397 ~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
++..++++|.+|+|||||++.|.+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998754
No 491
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.83 E-value=0.18 Score=56.43 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 388 LAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 388 l~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
++.+.-....+..++|+|.+|+|||||+|+|++.
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444333334567999999999999999999864
No 492
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.80 E-value=0.13 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.0
Q ss_pred cEEEEccCCCChhHHHHhhhc
Q 005977 400 NVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~ 420 (666)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999999975
No 493
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.76 E-value=0.13 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.8
Q ss_pred cEEEEccCCCChhHHHHhhhcc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.+.++|.+|+|||||+++|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5788999999999999999864
No 494
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.57 E-value=0.16 Score=49.51 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=30.2
Q ss_pred cchhhHHHHHHhhcCCCccEEEEccCCCChhHHHHhhhcc
Q 005977 382 LGVRNLLAFIKELAGPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 382 ~Gv~eLl~~I~~~l~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
+|+..|=..+..-++.+..+.++|.+|+|||||+..|+..
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4556655555444556667889999999999999999863
No 495
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.52 E-value=0.17 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred ccEEEEccCCCChhHHHHhhhc
Q 005977 399 GNVWVIGAQNAGKSTLINTFAK 420 (666)
Q Consensus 399 ~~v~vvG~~NvGKSTLIN~L~~ 420 (666)
..++++|.+|+|||||++.|..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999983
No 496
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.47 E-value=0.22 Score=46.76 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|..|+|||||++.|++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455578899999999999999998765
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.47 E-value=0.22 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCccEEEEccCCCChhHHHHhhhccc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
+++..++++|.+|+|||||++.|++-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345578899999999999999998754
No 498
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.37 E-value=0.16 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred cEEEEccCCCChhHHHHhhhccc
Q 005977 400 NVWVIGAQNAGKSTLINTFAKKE 422 (666)
Q Consensus 400 ~v~vvG~~NvGKSTLIN~L~~~~ 422 (666)
.++++|.+|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999998753
No 499
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.37 E-value=0.23 Score=47.65 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCCccEEEEccCCCChhHHHHhhhcc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
..+..++++|.+|+|||||.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34557889999999999999999864
No 500
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.37 E-value=0.15 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCccEEEEccCCCChhHHHHhhhcc
Q 005977 396 GPRGNVWVIGAQNAGKSTLINTFAKK 421 (666)
Q Consensus 396 ~~~~~v~vvG~~NvGKSTLIN~L~~~ 421 (666)
.++..++|+|.+|+|||||+++|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667899999999999999999864
Done!