BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005979
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 348 bits (893), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 291/476 (61%), Gaps = 44/476 (9%)
Query: 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
P VAIVGRPNVGKS +FNR+ G +IV D PGVTRDR+Y + W ++F L+DTGG+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI-- 81
Query: 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
IG E P + I +QA A++E+ VIIF+V+G+
Sbjct: 82 ----------------DIGDE--PFLAQ----------IRQQAEIAMDEADVIIFMVNGR 113
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFS-PLPISAISGT 342
G+TAADEE+A L + K ++LAVNK ++ + +F+SLGF P PIS G
Sbjct: 114 EGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPISGTHGL 170
Query: 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402
G G+LLD V K + T+ EE + ++GRPNVGKSS++NA++GE+R IVS +
Sbjct: 171 GLGDLLDAVAEHFKNIPETK--YNEE--VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV 226
Query: 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVA 462
+GTTRDA+DT FT + Q+F ++DTAG+RK+ + TTE SV RA +AI RS+VVA
Sbjct: 227 AGTTRDAVDTSFTYNQ-QEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVA 282
Query: 463 LVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522
+V++ I EQD RIA + GK +IVVNKWD + +K++ T +E+++R+ + LD
Sbjct: 283 VVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV-DKDESTMKEFEENIRDHFQFLD 341
Query: 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPXXXXXXXX 582
+API++ +A+ + + ++ A + S R+ T +N V+ +AVA +P
Sbjct: 342 YAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAM-NPTPTHNGSRL 400
Query: 583 XVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRR 638
+YY TQ +V+PP+FV FVND +L +Y R++E ++R GF GTPI++ R+R+
Sbjct: 401 KIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 456
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 342 bits (877), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 286/476 (60%), Gaps = 44/476 (9%)
Query: 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
P VAIVGRPNVGKS +FNR+ G +IV D PGVTRDR+Y + W ++F L+DTGG+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI-- 61
Query: 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
IG E P + I +QA A +E+ VIIF V+G+
Sbjct: 62 ----------------DIGDE--PFL----------AQIRQQAEIAXDEADVIIFXVNGR 93
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFS-PLPISAISGT 342
G+TAADEE+A L + K ++LAVNK ++ + +F+SLGF P PIS G
Sbjct: 94 EGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEXR-ANIYDFYSLGFGEPYPISGTHGL 150
Query: 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402
G G+LLD V K + T+ EE + ++GRPNVGKSS++NA +GE+R IVS +
Sbjct: 151 GLGDLLDAVAEHFKNIPETK--YNEE--VIQFCLIGRPNVGKSSLVNAXLGEERVIVSNV 206
Query: 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVA 462
+GTTRDA+DT FT + Q+F ++DTAG RK+ + TTE SV RA +AI RS+VVA
Sbjct: 207 AGTTRDAVDTSFTYNQ-QEFVIVDTAGXRKKGKVY---ETTEKYSVLRALKAIDRSEVVA 262
Query: 463 LVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522
+V++ I EQD RIA + GK +IVVNKWD + +K++ T +E+++R+ + LD
Sbjct: 263 VVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV-DKDESTXKEFEENIRDHFQFLD 321
Query: 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPXXXXXXXX 582
+API++ +A+ + + + A + S R+ T +N V+ +AVA +P
Sbjct: 322 YAPILFXSALTKKRIHTLXPAIIKASENHSLRVQTNVLNDVIXDAVA-XNPTPTHNGSRL 380
Query: 583 XVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRR 638
+YY TQ +V+PP+FV FVND +L +Y R++E ++R GF GTPI++ R+R+
Sbjct: 381 KIYYATQVSVKPPSFVVFVNDPELXHFSYERFLENRIRDAFGFEGTPIKIFARARK 436
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 157 NVPE----HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE 212
N+PE + + ++GRPNVGKS+L N +G R IV + G TRD + + + E
Sbjct: 165 NIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQE 224
Query: 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE 272
F++VDT G + + + E T + +V R A AI+
Sbjct: 225 FVIVDTAG----XRKKGKVYE---------------TTEKYSVLR--------ALKAIDR 257
Query: 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326
S V+ ++DG+ G+ D+ IA + + K +++ VNK ++ K EF
Sbjct: 258 SEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTXKEF 309
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 263/478 (55%), Gaps = 47/478 (9%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
V IVGRPNVGKS LFN+LV +AIV DE GVTRD + W F LVDT GV +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD-- 61
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
+ +I+ T+ I E+ +++F+VDG+ G
Sbjct: 62 -NPQDIISQKXKEVTLN--------------------------XIREADLVLFVVDGKRG 94
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFWSLGF-SPLPISAISGTG 343
+T DE +AD+LRK+ +D IL NK E+ R+ +V E +SLGF P+P+SA
Sbjct: 95 ITKEDESLADFLRKSTVD--TILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN 152
Query: 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAI--AIVGRPNVGKSSILNALVGEDRTIVSP 401
L+ + +L+ E DL + AI AIVGRPNVGKS++ NA++ ++R +VSP
Sbjct: 153 LDTXLETIIKKLE--EKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP 210
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVV 461
I GTTRD +D E +G+K+ +DTAG+R+++ + T E S R +I ++DVV
Sbjct: 211 IPGTTRDPVDDE-VFIDGRKYVFVDTAGLRRKSRVEP--RTVEKYSNYRVVDSIEKADVV 267
Query: 462 ALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521
+V++A IT QD R A E+ G+ ++V NKWD + ++ ++ + + REKL +
Sbjct: 268 VIVLDATQGITRQDQRXAGLXERRGRASVVVFNKWDLVVHREKRYDEFTKL-FREKLYFI 326
Query: 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPXXXXXXX 581
D++P+++++A G ++D+ I A + + ++ ++ IN +Q+ +AF + P
Sbjct: 327 DYSPLIFTSADKGWNIDRXIDAXNLAYASYTTKVPSSAINSALQKVLAFTNLP-----RG 381
Query: 582 XXVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADA-GFSGTPIRLLWRSRR 638
+++ Q ++PPTF+FFVN + + ++ K +R F G+PI L ++ R
Sbjct: 382 LKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR 439
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+VAIVGRPNVGKS LFN ++ RA+V PG TRD + F +++ VDT G+
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
S+ +P +E + + +IE++ V++ ++D
Sbjct: 242 SRVEPRTVEKYS--------------------------NYRVVDSIEKADVVVIVLDATQ 275
Query: 285 GLTAADEEIA 294
G+T D+ A
Sbjct: 276 GITRQDQRXA 285
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 28/206 (13%)
Query: 342 TGTGELL-------DLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE 394
T TGE++ + + ELKK + L NR + IVG+PNVGKS++LN L+ E
Sbjct: 211 TNTGEVVTRLERIKEKLTEELKKADAGILL----NRGLRMVIVGKPNVGKSTLLNRLLNE 266
Query: 395 DRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454
DR IV+ I GTTRD I E G FR++DTAG+R + + E L + R +
Sbjct: 267 DRAIVTDIPGTTRDVISEEIV-IRGILFRIVDTAGVR-----SETNDLVERLGIERTLQE 320
Query: 455 IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV 514
I ++D+V V++A + + E+D +I ERI+ K L+V+NK D + N E+++
Sbjct: 321 IEKADIVLFVLDASSPLDEEDRKILERIKN--KRYLVVINKVDVVEKIN-------EEEI 371
Query: 515 REKLRALDWAPIVYSTAIAGQSVDKI 540
+ KL +V +A+ G+ ++K+
Sbjct: 372 KNKLGT--DRHMVKISALKGEGLEKL 395
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 38/205 (18%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
R+ IVG+PNVGKS L NRL+ +RAIV D PG TRD + F +VDT GV
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 301
Query: 225 SKSQPN-IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
+S+ N ++E L I T+ IE++ +++F++D
Sbjct: 302 -RSETNDLVERLGIERTL--------------------------QEIEKADIVLFVLDAS 334
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GIMQVSEFWSLGFSPLPISAISGT 342
+ L D +I + ++ +K ++ +NK + K ++ + ISA+ G
Sbjct: 335 SPLDEEDRKILERIK----NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGE 390
Query: 343 GTGELLDLVCSELKKV--EGTEDLV 365
G +L + + E +++ G++ L+
Sbjct: 391 GLEKLEESIYRETQEIFERGSDSLI 415
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 98/194 (50%), Gaps = 35/194 (18%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+ +V IVGRPNVGKS+LFNRL+ A+V D PGVTRD G F+LVDTGG+
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60
Query: 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282
+ K + I E + A+E++ V++F VDG
Sbjct: 61 SGDKWEKKIQE-------------------------------KVDRALEDAEVVLFAVDG 89
Query: 283 QAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFS-PLPISAISG 341
+A LT AD E+A++LR+ K +IL K + P K + + + LGF P+P S+
Sbjct: 90 RAELTQADYEVAEYLRRK--GKPVILVATKVDDP-KHELYLGPLYGLGFGDPIPTSSEHA 146
Query: 342 TGTGELLDLVCSEL 355
G ELL+ + L
Sbjct: 147 RGLEELLEAIWERL 160
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+ IVGRPNVGKSS+ N L+ + +V+ + G TRD + G +F L+DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG-RFLLVDTGGL--- 59
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
SG E + RA+ ++VV ++ A +T+ D +AE + ++GK ++V
Sbjct: 60 ----WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVA 115
Query: 494 NKWD 497
K D
Sbjct: 116 TKVD 119
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 19/190 (10%)
Query: 351 VCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI 410
+ +E+ ++ T+D E +AIVGRPNVGKSS+LNA DR IV+ + GTTRD +
Sbjct: 204 IAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV 263
Query: 411 DTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470
+++ G +++DTAGIR+ + E + V R+ +A +D+V L I+A
Sbjct: 264 ESQLV-VGGIPVQVLDTAGIRE------TSDQVEKIGVERSRQAANTADLVLLTIDAATG 316
Query: 471 ITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530
T D I E+++ + ++V+NK D + K T+ Y +++ + IV++
Sbjct: 317 WTTGDQEIYEQVKH--RPLILVMNKIDLV-EKQLITSLEYPENITQ---------IVHTA 364
Query: 531 AIAGQSVDKI 540
A Q +D +
Sbjct: 365 AAQKQGIDSL 374
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 34/162 (20%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+VAIVGRPNVGKS+L N +RAIV D PG TRD + + G ++DT G+
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
S IG+E +R+AA + +++ +D
Sbjct: 286 SDQ----------VEKIGVE----RSRQAA----------------NTADLVLLTIDAAT 315
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326
G T D+EI + ++ + +IL +NK + K ++ E+
Sbjct: 316 GWTTGDQEIYEQVKH----RPLILVMNKIDLVEKQLITSLEY 353
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 38/209 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGVLNV 224
VAIVG+PNVGKS L N L+G +I+ + G TR R+ G ++ E + + +DT G+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
KS +G SM+E A ++EE+ VI+F++D
Sbjct: 72 KKSD-----------VLGH----------------SMVE-IAKQSLEEADVILFMIDATE 103
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPL----PISA 338
G DEEI K ++K +I+ +NK + P K ++ + + L PISA
Sbjct: 104 GWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 162
Query: 339 ISGTGTGELLDLVCSELKKVEG--TEDLV 365
+ G EL+ + L + E ED++
Sbjct: 163 LKGANLDELVKTILKYLPEGEPLFPEDMI 191
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+AIVG+PNVGKS++LN L+G +I+SP +GTTR + P + +DT GI +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER-IEQEGKGCLIV 492
G + V A +++ +DV+ +I+A +D I + I+ K ++V
Sbjct: 72 KKSDVLGHSM----VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 493 VNKWDTI-PNKN 503
+NK D I P KN
Sbjct: 128 INKIDKIGPAKN 139
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 38/209 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGVLNV 224
VAIVG+PNVGKS L N L+G +I+ + G TR R+ G ++ E + + +DT G+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
KS +G SM+E A ++EE+ VI+F++D
Sbjct: 73 KKSD-----------VLGH----------------SMVE-IAKQSLEEADVILFMIDATE 104
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPL----PISA 338
G DEEI K ++K +I+ +NK + P K ++ + + L PISA
Sbjct: 105 GWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163
Query: 339 ISGTGTGELLDLVCSELKKVEG--TEDLV 365
+ G EL+ + L + E ED++
Sbjct: 164 LKGANLDELVKTILKYLPEGEPLFPEDMI 192
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+AIVG+PNVGKS++LN L+G +I+SP +GTTR + P + +DT GI +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER-IEQEGKGCLIV 492
G + V A +++ +DV+ +I+A +D I + I+ K ++V
Sbjct: 73 KKSDVLGHSM----VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 493 VNKWDTI-PNKN 503
+NK D I P KN
Sbjct: 129 INKIDKIGPAKN 140
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+ I GRPN GKSS+LNAL G + IV+ I+GTTRD + E +G +IDTAG+R+
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL-REHIHIDGMPLHIIDTAGLRE- 67
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA 467
+ E + + RA++ I ++D V +++
Sbjct: 68 -----ASDEVERIGIERAWQEIEQADRVLFMVDG 96
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 68
Query: 225 S 225
S
Sbjct: 69 S 69
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+ I GRPN GKSS+LNAL G + IV+ I+GTTRD + E +G +IDTAG+R+
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL-REHIHIDGMPLHIIDTAGLRE- 64
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA 467
+ E + + RA++ I ++D V +++
Sbjct: 65 -----ASDEVERIGIERAWQEIEQADRVLFMVDG 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65
Query: 225 S 225
S
Sbjct: 66 S 66
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+ I GRPN GKSS+LNAL G + IV+ I+GTTRD + E +G +IDTAG+R+
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL-REHIHIDGXPLHIIDTAGLRE- 64
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA 467
+ E + + RA++ I ++D V ++
Sbjct: 65 -----ASDEVERIGIERAWQEIEQADRVLFXVDG 93
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREA 65
Query: 225 S 225
S
Sbjct: 66 S 66
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435
I G+PN GKS++LN L+G++R IVS + GTTRD I+ F + FRL DTAG+R+
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI-HDKTMFRLTDTAGLRE--- 293
Query: 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIE 466
+G E + R+ + +D++ +++
Sbjct: 294 ---AGEEIEHEGIRRSRMKMAEADLILYLLD 321
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
I G+PN GKS L N L+G RAIV PG TRD + + F L DT G+
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
I + GR NVGKSS +NALVG++ +IVS +GTT D + L+DT G+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
+ L V +A R R+D LV ++ E D + ++ ++VV
Sbjct: 97 GELGR-------LRVEKARRVFYRADCGILVTDSAPTPYEDD--VVNLFKEMEIPFVVVV 147
Query: 494 NKWDTIPNKNQQTATYYEQDVREKL 518
NK D + K ++ YE K+
Sbjct: 148 NKIDVLGEKAEELKGLYESRYEAKV 172
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMY-GRSFWGEHEFMLVDTGGVLNV 224
+ + GR NVGKS+ N LVG N +IV D G T D +Y LVDT G+ +V
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 225 SK 226
+
Sbjct: 97 GE 98
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 35/194 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+AIVGRPNVGKS L N+L+G +I + TR R+ G G ++ + VDT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL---- 63
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
++ E AI ++ + A+++I + ++IF+V+G
Sbjct: 64 ----HMEEKRAIN---------------------RLMNKAASSSIGDVELVIFVVEGTR- 97
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPLPISAISGTG 343
T DE + + LR+ +ILAVNK ++ + ++ +F + + L I IS
Sbjct: 98 WTPDDEMVLNKLREGKAP--VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE- 154
Query: 344 TGELLDLVCSELKK 357
TG +D + + ++K
Sbjct: 155 TGLNVDTIAAIVRK 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IAIVGRPNVGKS++LN L+G+ +I S + TTR I T Q +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI-YVDTPGLHME 66
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIV- 492
A + +A S +I ++V V+E T D + ++ +EGK +I+
Sbjct: 67 EKRAINRLMNKAAS-----SSIGDVELVIFVVEGTRW-TPDDEMVLNKL-REGKAPVILA 119
Query: 493 VNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
VNK D + K + Q + ++ LD PI +A G +VD I
Sbjct: 120 VNKVDNVQEKADLLP--HLQFLASQMNFLDIVPI---SAETGLNVDTI 162
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 35/194 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+AIVGRPNVGKS L N+L+G +I + TR R+ G G ++ + VDT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL---- 66
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
++ E AI ++ + A+++I + ++IF+V+G
Sbjct: 67 ----HMEEKRAIN---------------------RLMNKAASSSIGDVELVIFVVEGTR- 100
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPLPISAISGTG 343
T DE + + LR+ +ILAVNK ++ + ++ +F + + L I IS
Sbjct: 101 WTPDDEMVLNKLREGKAP--VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE- 157
Query: 344 TGELLDLVCSELKK 357
TG +D + + ++K
Sbjct: 158 TGLNVDTIAAIVRK 171
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IAIVGRPNVGKS++LN L+G+ +I S + TTR I T Q +DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI-YVDTPGLHME 69
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIV- 492
A + +A S +I ++V V+E T D + ++ +EGK +I+
Sbjct: 70 EKRAINRLMNKAAS-----SSIGDVELVIFVVEGTRW-TPDDEMVLNKL-REGKAPVILA 122
Query: 493 VNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
VNK D + K + Q + ++ LD PI +A G +VD I
Sbjct: 123 VNKVDNVQEKADLLP--HLQFLASQMNFLDIVPI---SAETGLNVDTI 165
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IA++G PNVGKS+I NAL GE+ + G T + + EF G+KF+++D G+
Sbjct: 7 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSL 64
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
A S E ++ R + + D+V +++A A E++ + ++ + G L+ +
Sbjct: 65 TA----NSIDEIIA--RDYIINEKPDLVVNIVDATA--LERNLYLTLQLXEXGANLLLAL 116
Query: 494 NKWD 497
NK D
Sbjct: 117 NKXD 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV +++
Sbjct: 7 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 65
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IA++G PNVGKS+I NAL GE+ + G T + + EF G+KF+++D G+
Sbjct: 10 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSL 67
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
A S E ++ R + + D+V +++A A E++ + ++ + G L+ +
Sbjct: 68 TA----NSIDEIIA--RDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLAL 119
Query: 494 NKWD 497
NK D
Sbjct: 120 NKMD 123
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV +++
Sbjct: 10 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IA++G PNVGKS+I NAL GE+ + G T + + EF G+KF+++D G+
Sbjct: 6 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
A S E ++ R + + D+V +++A A E++ + ++ + G L+ +
Sbjct: 64 TA----NSIDEIIA--RDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLAL 115
Query: 494 NKWD 497
NK D
Sbjct: 116 NKMD 119
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV +++
Sbjct: 6 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
IA++G PNVGKS+I NAL GE+ + G T + + EF G+KF+++D G+
Sbjct: 6 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
A S E ++ R + + D+V +++A A E++ + ++ + G L+ +
Sbjct: 64 TA----NSIDEIIA--RDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLAL 115
Query: 494 NKWD 497
NK D
Sbjct: 116 NKMD 119
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV +++
Sbjct: 6 IALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGI 430
+ +A+VG PNVGK++I NAL G R V G T + + E ++F ++D GI
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGI 60
Query: 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL 490
A S E ++ R F +DV+ ++++ C+ E E E K +
Sbjct: 61 YSLTA----HSIDELIA--RNFILDGNADVIVDIVDS-TCLMRNLFLTLELFEMEVKNII 113
Query: 491 IVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
+V+NK+D + K + D++ K+R P++ + A G+ V+++
Sbjct: 114 LVLNKFDLLKKKGAKI------DIK-KMRKELGVPVIPTNAKKGEGVEEL 156
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
+L VA+VG PNVGK+ +FN L G R V + PGVT ++ G + E EF++VD G+
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Query: 222 LNVS 225
+++
Sbjct: 61 YSLT 64
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
VAIVG+PNVGKS L N L+G A + P TR R+ G G + + VDT G+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK-FRLIDTAGIRK 432
+AIVG+PNVGKS++LN L+G +SP TTR + T EG++ +DT G+ K
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHK 67
Query: 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ-EGK-GCL 490
+ + G + + A+ + V V++ T +D +A ++ GK L
Sbjct: 68 --PMDALGEFMD----QEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL 121
Query: 491 IVVNKWDTIPNKNQQTATYYE 511
+V NK D + Y+E
Sbjct: 122 LVGNKLDAAKYPEEAMKAYHE 142
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 47/216 (21%)
Query: 154 TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF 213
T G+ P L VA VGR NVGKS+L N L A V PG TR + + ++
Sbjct: 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKY 70
Query: 214 MLVDTG--GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE 271
VD G VSK + + + L E S+
Sbjct: 71 YFVDLPGYGYAKVSKKERMLWKRLV---------------EDYFKNRWSLQ--------- 106
Query: 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA----------VNKCESPRKGIM 321
++ LVDG+ +D + +W++ + I+L K E RK
Sbjct: 107 ---MVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163
Query: 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357
+ E ++ +P S+++G G ELLDL+ + LK+
Sbjct: 164 KYGE-----YTIIPTSSVTGEGISELLDLISTLLKE 194
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTR 407
+A VGR NVGKSS+LNAL VS G TR
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR 59
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+ ++G PN GK+ LFN L N+ V + PGVT ++ G GEH + D GV
Sbjct: 1 MTHALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVY 59
Query: 223 NVSKSQPNIMED--LAITTTIGME 244
++ + I +D +A + I +E
Sbjct: 60 SLVANAEGISQDEQIAAQSVIDLE 83
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435
++G PN GK+++ NAL ++ V G T + EF E + D G+ A
Sbjct: 6 LIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGE-HLIEITDLPGVYSLVA 63
Query: 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495
A S E ++ D + VI+ AC E+ + ++ + GK ++ +N
Sbjct: 64 NAEGISQDEQIAAQSVIDL--EYDCIINVID--ACHLERHLYLTSQLFELGKPVVVALNM 119
Query: 496 WD 497
D
Sbjct: 120 MD 121
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 41/201 (20%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+P V I G PNVGKS L L I P TR G+ G + ++DT G+L
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIA-SYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVD 281
+ S+ N IE+QA A+ +II++ D
Sbjct: 226 DRPISERN------------------------------EIEKQAILALRYLGNLIIYIFD 255
Query: 282 GQAGLTAADEE---IADWLRKNYMDKFIILAVNKCE-SPRKGIMQVSEFWS-LGFSPLPI 336
EE + + + + D ++ +NK + + + I ++ +F G +P+ I
Sbjct: 256 PSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI 315
Query: 337 SAISGTGTGELLDLVCSELKK 357
SA+ GTG +DLV E+ K
Sbjct: 316 SALKGTG----IDLVKEEIIK 332
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ-KFRLIDTAG 429
IP + I G PNVGKS++L AL I S TTR +F +G ++++IDT G
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIAS-YPFTTRGINVGQFE--DGYFRYQIIDTPG 223
Query: 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC--ITEQDCRIAERIEQEGK 487
+ R + +A+ R + ++ + + C E+ + E + E K
Sbjct: 224 LLDRPISERNEIEKQAILALRYLGNL----IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK 279
Query: 488 GC--LIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAE 545
L+V+NK D +++ E+ V+EK PI S A+ G +D +V E
Sbjct: 280 DLPFLVVINKIDV---ADEENIKRLEKFVKEK----GLNPIKIS-ALKGTGID--LVKEE 329
Query: 546 MV 547
++
Sbjct: 330 II 331
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
I ++G PN GK+++ N L G R V +G T + + +F+ + Q L+D G
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQ-VTLVDLPGTYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
I+S S E + A I D L+ A E++ + ++ + G C++ +
Sbjct: 64 TTISSQTSLDEQI----ACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVAL 119
Query: 494 NKWDTIPNKN 503
N D +N
Sbjct: 120 NMLDIAEKQN 129
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
I ++G PN GK+++ N L G R V +G T + + +F+ + Q L+D G
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQ-VTLVDLPGTYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
I+S S E + A I D L+ A E++ + ++ + G C++ +
Sbjct: 64 TTISSQTSLDEQI----ACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVAL 119
Query: 494 NKWDTIPNKN 503
N D +N
Sbjct: 120 NXLDIAEKQN 129
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H++ +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHMV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+A+ G PNVGK+S+ NAL G + V+ G T + + FT +G LID G
Sbjct: 8 VALAGCPNVGKTSLFNALTG-TKQYVANWPGVTVEKKEGVFT-YKGYTINLIDLPG---- 61
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
S G ++ + R + +D+V LV +++ EQ + I + K ++ +
Sbjct: 62 --TYSLGYSSIDEKIARDYLLKGDADLVILVADSVN--PEQSLYLLLEILEMEKKVILAM 117
Query: 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
D + Y +L+ P+V+++++ G+ ++++
Sbjct: 118 TAIDEAKKTGMKIDRY-------ELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
I ++G PN GK+++ N L G R V +G T + + +F+ + Q L+D G
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQ-VTLVDLPGTYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
I+S S E + A I D L+ A E++ + ++ + G C++ +
Sbjct: 64 TTISSQTSLDEQI----ACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVAL 119
Query: 494 NKWDTIPNKN 503
N D +N
Sbjct: 120 NMLDIAEKQN 129
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
R I+G PNVGKS L NRL N A D PG+T + + + E L+DT G+L
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGIL 176
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ- 322
R+ T ++ ++ LVD + +++ + I D L+ +K I+ +NK + + Q
Sbjct: 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQ 70
Query: 323 -VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEE-NRIPAIA----- 375
F + G L I++++G G ++ V ++++++E+ +R+ A
Sbjct: 71 WKEHFENQGIRSLSINSVNGQGLNQI----------VPASKEILQEKFDRMRAKGVKPRA 120
Query: 376 ----IVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAG 429
I+G PNVGKS+++N L ++ +T P T++ + G++ L+DT G
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV------GKELELLDTPG 174
Query: 430 I 430
I
Sbjct: 175 I 175
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT---RDAIDTEFTGPEGQKFRLI 425
N IP+I IVG N GK+S+ N+L G + + + + T R AI +K L+
Sbjct: 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-----NNRKIMLV 231
Query: 426 DTA----GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA------MACITEQD 475
DT GI + A + +EA + SD + LVI++ + +
Sbjct: 232 DTVPFIRGIPPQIVDAFFVTLSEA----------KYSDALILVIDSTFSENLLIETLQSS 281
Query: 476 CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526
I I GK L+ +NK D I Y + D+ EKL ++PI
Sbjct: 282 FEILREIGVSGKPILVTLNKIDKI-----NGDLYKKLDLVEKLSKELYSPI 327
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVG 185
+P + IVG N GK++LFN L G
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTG 201
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT---RDAIDTEFTGPEGQKFRLI 425
N IP+I IVG N GK+S+ N+L G + + + + T R AI +K L+
Sbjct: 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-----NNRKIMLV 231
Query: 426 DTA----GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA------MACITEQD 475
DT GI + A + +EA + SD + LVI++ + +
Sbjct: 232 DTVGFIRGIPPQIVDAFFVTLSEA----------KYSDALILVIDSTFSENLLIETLQSS 281
Query: 476 CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526
I I GK L+ +NK D I Y + D+ EKL ++PI
Sbjct: 282 FEILREIGVSGKPILVTLNKIDKI-----NGDLYKKLDLVEKLSKELYSPI 327
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+P + IVG N GK++LFN L G + + + Y + MLVDT G +
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFI 237
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT---RDAIDTEFTGPEGQKFRLI 425
N IP+I IVG N GK+S+ N+L G + + + + T R AI +K L+
Sbjct: 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-----NNRKIMLV 231
Query: 426 DTA----GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA------MACITEQD 475
DT GI + A + +EA + SD + LVI++ + +
Sbjct: 232 DTVSFIRGIPPQIVDAFFVTLSEA----------KYSDALILVIDSTFSENLLIETLQSS 281
Query: 476 CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526
I I GK L+ +NK D I Y + D+ EKL ++PI
Sbjct: 282 FEILREIGVSGKPILVTLNKIDKI-----NGDLYKKLDLVEKLSKELYSPI 327
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVG 185
+P + IVG N GK++LFN L G
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTG 201
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
V ++G PN GK+ LFN+L G R V + GVT +R G +H+ LVD G +++
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+ ++G PN GK+++ N L G R V +G T + + F + Q L+D G
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQ-VTLVDLPGTYSL 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
I+S S E + A I D L+ A E++ + ++ + G C++ +
Sbjct: 64 TTISSQTSLDEQI----ACHYILSGDADMLINVVDASNLERNLYLTLQLLELGIPCVVAL 119
Query: 494 NKWDTIPNKNQ 504
N D I K Q
Sbjct: 120 NMLD-IAEKQQ 129
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H + +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHXV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+A+ G PNVGK+S+ NAL G + V+ G T + + FT +G LID G
Sbjct: 8 VALAGCPNVGKTSLFNALTG-TKQYVANWPGVTVEKKEGVFT-YKGYTINLIDLPG---- 61
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
S G ++ + R + +D+V LV +++ EQ + I + K ++
Sbjct: 62 --TYSLGYSSIDEKIARDYLLKGDADLVILVADSVN--PEQSLYLLLEILEXEKKVILAX 117
Query: 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
D + Y +L+ P+V+++++ G+ ++++
Sbjct: 118 TAIDEAKKTGXKIDRY-------ELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H++ +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHMV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433
+A+ G PNVGK+S+ NAL G + V+ G T + + FT +G LID G
Sbjct: 8 VALAGCPNVGKTSLFNALTGT-KQYVANWPGVTVEKKEGVFT-YKGYTINLIDLPGTY-- 63
Query: 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493
S G ++ + R + +D+V LV +++ EQ + I + K ++ +
Sbjct: 64 ----SLGYSSIDEKIARDYLLKGDADLVILVADSVN--PEQSLYLLLEILEMEKKVILAM 117
Query: 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540
D + Y +L+ P+V+++++ G+ ++++
Sbjct: 118 TAIDEAKKTGMKIDRY-------ELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
L RV IVG PN GKS + N+L G + V +PG+T+ + F E+ ++DT G+L
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW---FSLENGVKILDTPGIL 155
Query: 223 NVSKSQPNIM-EDLA 236
NI EDLA
Sbjct: 156 -----YKNIFSEDLA 165
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTA 428
+R+ + IVG PN GKS+I+N L G+ + V G T+ F+ G K ++DT
Sbjct: 97 DRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLENGVK--ILDTP 152
Query: 429 GI 430
GI
Sbjct: 153 GI 154
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G PN GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + A V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPAEKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G PN GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G PN GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVG-GNRAIVVDEPGVTRDRMYGRSFW---GEHEFM 214
PE LP +A+ GR NVGKS+ N L+ N A +PG T+ +F+ E F+
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT----LNFYIINDELHFV 74
Query: 215 LVDTGGVLNVSKSQ 228
V G VSKS+
Sbjct: 75 DVPGYGFAKVSKSE 88
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 368 ENRIPAIAIVGRPNVGKSSILNALV 392
E +P IA+ GR NVGKSS +N+L+
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLI 44
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGV+ +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSG 43
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G PN GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGV +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSG 43
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G PN GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
V IVG PNVGKS LFN L N A+ + P T D+ G
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVG 41
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 373 AIAIVGRPNVGKSSILNAL 391
A+ IVG PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
V IVG PNVGKS LFN L N A+ + P T D+ G
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVG 41
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 373 AIAIVGRPNVGKSSILNAL 391
A+ IVG PNVGKS++ NAL
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G P GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 32/178 (17%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTI-------VSPISGTTRDAIDTEFTGPEGQKFRLID 426
IA++G P GK+S+ N + G ++ + V SG + D E
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLE------------- 52
Query: 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG 486
I+ I S + V R + +R+D + V++A E++ + ++ + G
Sbjct: 53 ---IQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETG 107
Query: 487 KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544
I +N D + + ++ +KL P+V ++A+ VD+++ A
Sbjct: 108 IPVTIALNMIDVLDGQGKKINV-------DKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 329 LGFSP---LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKS 385
LG P ISA G G EL D + + G +D + +VG NVGKS
Sbjct: 129 LGLKPEDVFLISAAKGQGIAELADAI----EYYRGGKD----------VYVVGCTNVGKS 174
Query: 386 SILNALVGE--DRT----IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGI 430
+ +N + E D T S GTT D ID P ++ L DT GI
Sbjct: 175 TFINRXIKEFSDETENVITTSHFPGTTLDLIDI----PLDEESSLYDTPGI 221
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432
I + G PNVGKSS +N +V V S TT++ F + K+++IDT G+
Sbjct: 31 TIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHF-DHKLNKYQIIDTPGLLD 88
Query: 433 RA 434
RA
Sbjct: 89 RA 90
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNV 224
+ + G PNVGKS+ N + N + V T +Y F + +++ ++DT G+L+
Sbjct: 32 IILSGAPNVGKSSFMNIVSRAN--VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 225 SKSQPNIMEDLAITTTIGMEGIPL 248
+ N +E IT + G+ L
Sbjct: 90 AFENRNTIEMTTITALAHINGVIL 113
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 372 PAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKF-RLIDTAG 429
P IA GR N GKS+ +N L + R S G T+ I+ GP + L+D G
Sbjct: 30 PEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH-INYFSVGPAAEPVAHLVDLPG 88
Query: 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGC 489
++ + E L ++ + + + L+++A +TE D R+ E GK
Sbjct: 89 YGYAEVPGAAKAHWEQL-LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI 147
Query: 490 LIVVNKWDTI 499
++ K D +
Sbjct: 148 HSLLTKCDKL 157
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMY 203
++P + P +A GR N GKS N L R A PG T+ Y
Sbjct: 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY 70
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGT-TRDAIDTEFTGPEGQKFRLIDTAGIRK 432
+ ++G+ VGKSS +N+L+GE VSP R + + G G +IDT G+ +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVE 96
Query: 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464
+ +AL + + F R DV+ V
Sbjct: 97 AGYV-----NHQALELIKGFLVNRTIDVLLYV 123
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 356 KKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGT-TRDAIDTEF 414
K +E L +++ + ++G+ VGKSS +N+L+GE VSP R + +
Sbjct: 20 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 79
Query: 415 TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464
G G +IDT G+ + + +AL + + F R DV+ V
Sbjct: 80 MG--GFTINIIDTPGLVEAGYV-----NHQALELIKGFLVNRTIDVLLYV 122
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGT-TRDAIDTEFTGPEGQKFRLIDTAGIRK 432
+ ++G+ VGKSS +N+L+GE VSP R + + G G +IDT G+ +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVE 96
Query: 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464
+ +AL + + F R DV+ V
Sbjct: 97 AGYV-----NHQALELIKGFLVNRTIDVLLYV 123
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGT-TRDAIDTEFTGPEGQKFRLIDTAGIRK 432
+ ++G+ VGKSS +N+L+GE VSP R + + G G +IDT G+ +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVE 96
Query: 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464
+ +AL + + F R DV+ V
Sbjct: 97 AGYV-----NHQALELIKGFLVNRTIDVLLYV 123
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 365 VEEENRIPAIAIVGRPNVGKSSILNALVG 393
VE++ +PAIA++G + GKSS+L AL G
Sbjct: 64 VEQDLALPAIAVIGDQSSGKSSVLEALSG 92
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 365 VEEENRIPAIAIVGRPNVGKSSILNALVG 393
VE++ +PAIA++G + GKSS+L AL G
Sbjct: 39 VEQDLALPAIAVIGDQSSGKSSVLEALSG 67
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 28/126 (22%)
Query: 375 AIVGRPNVGKSSILNALVG-------------EDRTIVSPISGTTRDAIDTEFTGPE--- 418
IVG PNVGKS++ NAL E T V P+ DA+ E PE
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDAL-AEIVKPERIL 64
Query: 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQD-CR 477
+D AG + + S E L N+ IR +D + V+ C D
Sbjct: 65 PTTMEFVDIAG------LVAGASKGEGLG-NKFLANIRETDAIGHVVR---CFENDDIVH 114
Query: 478 IAERIE 483
+A +I+
Sbjct: 115 VAGKID 120
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 165 RVAIVGRPNVGKSALFNRL 183
+ IVG PNVGKS LFN L
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 369 NRIPAIAIVGRPNVGKSSILNALVGED 395
+ +PAIA+VG + GKSS+L ++VG+D
Sbjct: 32 DSLPAIAVVGGQSSGKSSVLESIVGKD 58
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432
I ++G N GK+++L L ED + ++P G ++ + +G K + D G+RK
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGLRK 60
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 366 EEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT------GPEG 419
E+ N + + ++G VGK+++L+ R + S +R I EF+ G
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLS------RFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 420 QKFRLIDTAGIRKRAAIASS 439
K ++ DTAG+ + AI S+
Sbjct: 74 VKAQIWDTAGLERYRAITSA 93
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGED-----------RTIVSPISGTTRDAIDTEFTGPEG 419
+P IA+VG + GKSS+L VG D R +V + +T + EF +G
Sbjct: 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEY--AEFLHCKG 108
Query: 420 QKF 422
+KF
Sbjct: 109 KKF 111
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432
I ++G N GK+++L L ED + ++P G ++ + +G K + D G RK
Sbjct: 20 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGQRK 73
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
R+ +VGR GKSA N ++G R + VTR G W + +VDT + +
Sbjct: 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82
Query: 224 --VSKSQPNIME 233
VSK+ P E
Sbjct: 83 SQVSKTDPGCEE 94
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432
I ++G N GK+++L L ED + ++P G ++ + +G K + D G RK
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGQRK 72
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432
I ++G N GK+++L L ED + ++P G ++ + +G K + D G RK
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGQRK 60
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGEDR------------TIVSPISGTTRDAIDTEFTGPE 418
+P IA+VG + GKSS+L VG D ++ ++ TT A EF +
Sbjct: 28 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYA---EFLHCK 84
Query: 419 GQKF 422
G+KF
Sbjct: 85 GKKF 88
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 24/122 (19%)
Query: 352 CSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID 411
++ K +E +L +E+ I ++G+ VGKSS +N+++GE +SP
Sbjct: 20 ATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF--------- 70
Query: 412 TEFTGPE---------GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVA 462
+ GP G +IDT G+ + I AL++ ++F + DV+
Sbjct: 71 -QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI-----NDMALNIIKSFLLDKTIDVLL 124
Query: 463 LV 464
V
Sbjct: 125 YV 126
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI--SGTTRDAIDTEFTGPEGQKFRLIDT 427
R P + I+G + GK+++L+ L +T V+ + G T+ + P G+K +DT
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKL---RKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDT 59
Query: 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK 487
G A S RA R + +D+V LV+ A + +Q + +
Sbjct: 60 PG-------------HAAFSAMRA-RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHV 105
Query: 488 GCLIVVNKWD 497
++ +NK D
Sbjct: 106 PIVLAINKCD 115
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 352 CSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID 411
++ K +E +L +E+ I + G+ VGKSS +N+++GE +SP +
Sbjct: 20 ATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVX 79
Query: 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464
+ G +IDT G+ + I AL++ ++F + DV+ V
Sbjct: 80 VSRS-RAGFTLNIIDTPGLIEGGYI-----NDXALNIIKSFLLDKTIDVLLYV 126
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV---VDEPGVTRDRMYGRSFWGEHEFML 215
P + R+ +VG+ GKSA N ++G R + +T+ S W E E ++
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILG--RKVFHSGTAAKSITKKCEKRSSSWKETELVV 82
Query: 216 VDTGGVLNV 224
VDT G+ +
Sbjct: 83 VDTPGIFDT 91
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 365 VEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT------GPE 418
+E+ N + + ++G VGK+++L+ R + S +R I EF+ G
Sbjct: 4 MEDYNFVFKVVLIGESGVGKTNLLS------RFTRNEFSHDSRTTIGVEFSTRTVMLGTA 57
Query: 419 GQKFRLIDTAGIRKRAAIASS 439
K ++ DTAG+ + AI S+
Sbjct: 58 AVKAQIWDTAGLERYRAITSA 78
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPN- 381
+S + G+ L +SA +G G EL+D +EG I I+ P+
Sbjct: 135 ISIYRDAGYDVLKVSAKTGEGIDELVDY-------LEG------------FICILAGPSG 175
Query: 382 VGKSSILNALVGED 395
VGKSSIL+ L GE+
Sbjct: 176 VGKSSILSRLTGEE 189
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGED 395
I G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 91 IEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 150
Query: 396 RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 151 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 183
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGED-----------RTIVSPISGTTRDAIDTEFTGPEG 419
+P IA+VG + GKSS+L VG D R +V + +T + EF +G
Sbjct: 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEY--AEFLHCKG 83
Query: 420 QKF 422
+KF
Sbjct: 84 KKF 86
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 502 KNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549
K Q +Y+ +R R LDW P + +++D + ++ DK
Sbjct: 309 KGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDK 356
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 86 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 145
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 146 DFGLARLIEDNEYTARQGAKFPIKWTA 172
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSIL--NALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 97 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAANILVGENLVCKVA 156
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 157 DFGLARLIEDNEYTARQGAKFPIKWTA 183
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 97 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 157 DFGLARLIEDNEYTARQGAKFPIKWTA 183
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 97 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 157 DFGLARLIEDNEYTARQGAKFPIKWTA 183
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 88 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 147
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 148 DFGLARLIEDNEYTARQGAKFPIKWTA 174
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 97 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 157 DFGLARLIEDNEYTARQGAKFPIKWTA 183
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 20/69 (28%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG---------PEGQK 421
+ ++ VG P+VGKS T++S ++GT +A + EFT +G K
Sbjct: 72 VASVGFVGFPSVGKS-----------TLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120
Query: 422 FRLIDTAGI 430
+++D GI
Sbjct: 121 IQMLDLPGI 129
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGED 395
+P IA+VG + GKSS+L VG D
Sbjct: 31 LPQIAVVGGQSAGKSSVLENFVGRD 55
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGED 395
+P IA+VG + GKSS+L VG D
Sbjct: 44 LPQIAVVGGQSAGKSSVLENFVGRD 68
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 371 IPAIAIVGRPNVGKSSILNALVGED 395
+P IA+VG + GKSS+L VG D
Sbjct: 31 LPQIAVVGGQSAGKSSVLENFVGRD 55
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 374 IAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDT 427
+ ++G VG+S I NAL+ ++ V P+ TTR +E +G+++ I T
Sbjct: 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE---EDGKEYHFIST 73
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 176 KSALFNRLV------GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229
K+++F+R++ GG+ + + G + +YGRSF E+ M D G+L+++ + P
Sbjct: 55 KNSIFHRIIPQFMCQGGD---ITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGP 111
Query: 230 N 230
N
Sbjct: 112 N 112
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 176 KSALFNRLV------GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229
K+++F+R++ GG+ + + G + +YGRSF E+ M D G+L+++ + P
Sbjct: 55 KNSIFHRIIPQFMCQGGD---ITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGP 111
Query: 230 N 230
N
Sbjct: 112 N 112
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 376 IVGRPNVGKSSILNALVGEDRTI----VSPISG----TTRDAIDTEFTGPEGQKFRLIDT 427
G+ VGKSS+LNAL+G I VS +SG TT A F P G +ID+
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF--PHGGD--VIDS 275
Query: 428 AGIRK 432
G+R+
Sbjct: 276 PGVRE 280
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
++ + T+ +GIPLA A+ +P +I R+ E S V I V G +
Sbjct: 130 EIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
++ + T+ +GIPLA A+ +P +I R+ E S V I V G +
Sbjct: 130 EIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E+ K LV+ +I + +A V R N + N LVGE+
Sbjct: 264 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 323
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 324 DFGLGRLIEDNEYTARQGAKFPIKWTA 350
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 589 QAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSA 648
Q V + V +A P + +++ +LR + GFS ++LL +K+ +KE +
Sbjct: 103 QXVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAXGS 162
Query: 649 SRT 651
+++
Sbjct: 163 TQS 165
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E K LV+ +I + +A V R N + N LVGE+
Sbjct: 94 GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 153
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 154 DFGLARLIEDNEYTARQGAKFPIKWTA 180
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 589 QAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSA 648
Q V + V +A P + +++ +LR + GFS ++LL +K+ +KE +
Sbjct: 103 QMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGS 162
Query: 649 SRT 651
+++
Sbjct: 163 TQS 165
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E K LV+ +I + +A V R N + N LVGE+
Sbjct: 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 322
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 323 DFGLARLIEDNEYTARQGAKFPIKWTA 349
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 345 GELLDLVCSELKKVEGTEDLVEEENRIPA-IAIVGRPNVGKSSI--LNALVGEDRTIVSP 401
G LLD + E K LV+ +I + +A V R N + N LVGE+
Sbjct: 90 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 149
Query: 402 ISGTTRDAIDTEFTGPEGQKFRLIDTA 428
G R D E+T +G KF + TA
Sbjct: 150 DFGLARLIEDNEYTARQGAKFPIKWTA 176
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 417 PEGQKFRLID-----TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI 471
PEG + R+ D + G ++R AIA RA+ R+ + L+ EA + +
Sbjct: 1204 PEGFETRVGDRGTQLSGGQKQRIAIA---------------RALVRNPKILLLDEATSAL 1248
Query: 472 -TEQDCRIAERIEQ--EGKGCLIVVNKWDTIPNKN 503
TE + + E +++ EG+ C+++ ++ +T+ N +
Sbjct: 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNAD 1283
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 589 QAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSA 648
Q V + V +A P + +++ +LR + GFS ++LL +K+ +KE +
Sbjct: 103 QMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGS 162
Query: 649 SRT 651
+++
Sbjct: 163 TQS 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,174,782
Number of Sequences: 62578
Number of extensions: 574657
Number of successful extensions: 2293
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2091
Number of HSP's gapped (non-prelim): 193
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)