Query 005979
Match_columns 666
No_of_seqs 616 out of 4630
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 16:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 5.4E-93 1.2E-97 743.1 46.9 439 164-642 4-443 (444)
2 PRK03003 GTP-binding protein D 100.0 5.8E-73 1.3E-77 627.8 53.6 431 163-639 38-469 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 5.3E-72 1.1E-76 617.0 51.8 428 165-635 1-429 (429)
4 PRK00093 GTP-binding protein D 100.0 9.8E-71 2.1E-75 607.6 53.8 430 164-638 2-432 (435)
5 PRK09518 bifunctional cytidyla 100.0 3.8E-69 8.3E-74 623.4 52.5 435 162-640 274-709 (712)
6 KOG1191 Mitochondrial GTPase [ 100.0 1.2E-36 2.6E-41 317.9 1.9 418 164-638 76-508 (531)
7 COG1160 Predicted GTPases [Gen 100.0 5.2E-28 1.1E-32 254.3 22.9 247 372-634 4-332 (444)
8 PF02421 FeoB_N: Ferrous iron 99.9 1.8E-25 3.8E-30 208.5 13.6 156 372-544 1-156 (156)
9 COG1159 Era GTPase [General fu 99.9 8.7E-25 1.9E-29 218.5 17.5 173 372-556 7-179 (298)
10 COG0486 ThdF Predicted GTPase 99.9 2.5E-24 5.4E-29 227.2 20.1 163 370-551 216-378 (454)
11 COG1159 Era GTPase [General fu 99.9 2.4E-24 5.2E-29 215.3 16.5 164 164-359 7-175 (298)
12 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-23 3.5E-28 195.3 13.6 150 165-351 2-156 (156)
13 TIGR00436 era GTP-binding prot 99.9 7E-23 1.5E-27 211.7 19.5 170 373-556 2-171 (270)
14 PF14714 KH_dom-like: KH-domai 99.9 6.1E-24 1.3E-28 175.0 8.3 80 554-635 1-80 (80)
15 COG0486 ThdF Predicted GTPase 99.9 2E-22 4.2E-27 212.9 20.4 162 163-358 217-378 (454)
16 cd01895 EngA2 EngA2 subfamily. 99.9 3.2E-22 7E-27 191.4 20.2 172 371-547 2-173 (174)
17 PRK09518 bifunctional cytidyla 99.9 5.5E-22 1.2E-26 230.5 24.6 164 370-550 274-437 (712)
18 COG2262 HflX GTPases [General 99.9 2.9E-22 6.2E-27 207.9 17.9 202 124-358 153-358 (411)
19 PRK15494 era GTPase Era; Provi 99.9 1E-21 2.2E-26 208.8 21.2 172 370-556 51-223 (339)
20 TIGR03156 GTP_HflX GTP-binding 99.9 7.3E-22 1.6E-26 210.1 19.9 191 131-354 157-350 (351)
21 KOG0092 GTPase Rab5/YPT51 and 99.9 4.1E-22 8.9E-27 185.6 14.2 158 371-549 5-167 (200)
22 KOG0084 GTPase Rab1/YPT1, smal 99.9 4.5E-22 9.7E-27 186.1 14.5 160 369-550 7-173 (205)
23 KOG1144 Translation initiation 99.9 2.5E-22 5.5E-27 217.0 13.4 208 161-430 473-740 (1064)
24 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 9.7E-22 2.1E-26 182.8 13.9 158 371-550 22-186 (221)
25 cd04171 SelB SelB subfamily. 99.9 4.9E-21 1.1E-25 181.9 18.9 157 373-546 2-163 (164)
26 PRK05291 trmE tRNA modificatio 99.9 3.7E-21 8.1E-26 211.7 19.1 158 370-550 214-371 (449)
27 TIGR03156 GTP_HflX GTP-binding 99.9 6E-21 1.3E-25 203.1 19.4 159 369-546 187-349 (351)
28 KOG0078 GTP-binding protein SE 99.9 5.1E-21 1.1E-25 181.8 16.3 160 369-550 10-175 (207)
29 PRK03003 GTP-binding protein D 99.9 7.3E-21 1.6E-25 211.5 20.2 164 370-550 37-200 (472)
30 TIGR00436 era GTP-binding prot 99.9 5.8E-21 1.3E-25 197.4 17.8 161 165-358 2-166 (270)
31 cd01858 NGP_1 NGP-1. Autoanti 99.9 4.5E-21 9.7E-26 181.9 15.5 153 266-430 2-157 (157)
32 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-20 2.4E-25 178.0 17.6 155 375-546 1-155 (157)
33 PRK00089 era GTPase Era; Revie 99.9 1.9E-20 4.1E-25 196.0 21.1 168 372-551 6-173 (292)
34 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.9E-20 4.1E-25 204.9 21.6 159 370-549 202-360 (442)
35 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-20 2.5E-25 208.5 19.7 160 373-549 1-160 (429)
36 PRK11058 GTPase HflX; Provisio 99.9 1.2E-20 2.6E-25 205.3 19.2 197 129-357 163-363 (426)
37 PRK12299 obgE GTPase CgtA; Rev 99.9 1.9E-20 4.2E-25 197.6 20.1 166 371-550 158-329 (335)
38 cd01897 NOG NOG1 is a nucleola 99.9 2E-20 4.3E-25 178.9 18.2 160 372-547 1-166 (168)
39 cd04142 RRP22 RRP22 subfamily. 99.9 2.8E-20 6E-25 183.2 18.8 167 372-551 1-176 (198)
40 PRK12296 obgE GTPase CgtA; Rev 99.9 3.6E-20 7.8E-25 202.4 21.5 175 371-561 159-352 (500)
41 PRK15494 era GTPase Era; Provi 99.8 2.1E-20 4.6E-25 198.7 18.7 164 163-358 52-218 (339)
42 cd01898 Obg Obg subfamily. Th 99.8 3.3E-20 7.1E-25 177.7 17.9 160 373-547 2-169 (170)
43 cd04120 Rab12 Rab12 subfamily. 99.8 3.1E-20 6.8E-25 183.0 17.7 156 372-549 1-163 (202)
44 cd01894 EngA1 EngA1 subfamily. 99.8 3.9E-20 8.5E-25 174.2 17.1 155 167-354 1-156 (157)
45 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.6E-20 1.2E-24 173.1 18.1 154 372-547 2-155 (157)
46 PRK12298 obgE GTPase CgtA; Rev 99.8 5.1E-20 1.1E-24 198.1 19.4 166 372-551 160-335 (390)
47 PF00009 GTP_EFTU: Elongation 99.8 1.9E-20 4.2E-25 183.0 14.7 160 371-548 3-186 (188)
48 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.7E-20 1.4E-24 179.6 18.3 150 372-538 3-172 (195)
49 KOG0394 Ras-related GTPase [Ge 99.8 1.9E-20 4.1E-25 172.5 13.1 163 369-550 7-179 (210)
50 cd04121 Rab40 Rab40 subfamily. 99.8 7.6E-20 1.6E-24 178.6 17.1 157 370-548 5-166 (189)
51 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-19 3.1E-24 172.8 18.6 159 372-549 1-166 (168)
52 PRK11058 GTPase HflX; Provisio 99.8 1E-19 2.2E-24 198.0 19.6 162 370-549 196-362 (426)
53 cd01879 FeoB Ferrous iron tran 99.8 6.2E-20 1.3E-24 173.3 15.6 154 376-548 1-156 (158)
54 cd04136 Rap_like Rap-like subf 99.8 5.2E-20 1.1E-24 174.9 15.1 153 372-547 2-161 (163)
55 cd01878 HflX HflX subfamily. 99.8 1.3E-19 2.8E-24 179.4 18.4 192 132-355 10-204 (204)
56 PRK00093 GTP-binding protein D 99.8 1E-19 2.2E-24 201.3 19.4 159 372-547 2-160 (435)
57 cd01890 LepA LepA subfamily. 99.8 1.8E-19 3.8E-24 174.3 18.6 157 372-547 1-175 (179)
58 PLN03118 Rab family protein; P 99.8 4.8E-20 1E-24 183.6 15.0 182 371-574 14-205 (211)
59 cd04145 M_R_Ras_like M-Ras/R-R 99.8 9.9E-20 2.2E-24 173.2 16.3 154 371-547 2-162 (164)
60 cd01889 SelB_euk SelB subfamil 99.8 1.9E-19 4.2E-24 176.5 18.5 162 372-547 1-184 (192)
61 COG0218 Predicted GTPase [Gene 99.8 2.4E-19 5.1E-24 170.5 18.3 172 156-357 17-198 (200)
62 cd01878 HflX HflX subfamily. 99.8 1.8E-19 4E-24 178.4 18.2 161 368-546 38-202 (204)
63 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.9E-19 4.1E-24 177.9 18.2 157 372-548 1-167 (201)
64 cd01867 Rab8_Rab10_Rab13_like 99.8 1.3E-19 2.9E-24 173.4 15.8 157 371-548 3-164 (167)
65 TIGR02729 Obg_CgtA Obg family 99.8 1.8E-19 3.8E-24 190.2 18.1 163 371-548 157-328 (329)
66 cd04166 CysN_ATPS CysN_ATPS su 99.8 9.8E-20 2.1E-24 180.9 15.0 152 373-540 1-185 (208)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.7E-19 3.7E-24 172.3 16.1 156 371-548 2-163 (166)
68 cd04175 Rap1 Rap1 subgroup. T 99.8 1.5E-19 3.4E-24 172.2 15.6 153 372-547 2-161 (164)
69 cd04109 Rab28 Rab28 subfamily. 99.8 1.6E-19 3.5E-24 180.4 16.3 157 372-549 1-166 (215)
70 cd04163 Era Era subfamily. Er 99.8 6.4E-19 1.4E-23 167.0 19.7 164 371-546 3-166 (168)
71 cd04140 ARHI_like ARHI subfami 99.8 1.4E-19 3E-24 173.0 15.1 154 372-547 2-163 (165)
72 cd04124 RabL2 RabL2 subfamily. 99.8 2.6E-19 5.7E-24 170.4 16.9 154 372-549 1-158 (161)
73 smart00173 RAS Ras subfamily o 99.8 1.9E-19 4.2E-24 171.4 15.9 155 372-549 1-162 (164)
74 TIGR03598 GTPase_YsxC ribosome 99.8 3.9E-19 8.5E-24 172.3 18.2 159 369-538 16-179 (179)
75 KOG0087 GTPase Rab11/YPT3, sma 99.8 9.8E-20 2.1E-24 172.1 13.3 159 367-547 10-174 (222)
76 cd01891 TypA_BipA TypA (tyrosi 99.8 3.5E-19 7.6E-24 175.0 17.9 151 372-541 3-174 (194)
77 cd04144 Ras2 Ras2 subfamily. 99.8 1.5E-19 3.4E-24 176.9 15.3 154 373-549 1-163 (190)
78 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.8E-19 6.1E-24 172.7 16.9 157 372-547 2-173 (175)
79 cd04133 Rop_like Rop subfamily 99.8 3.1E-19 6.7E-24 172.3 17.0 160 372-548 2-172 (176)
80 PRK12299 obgE GTPase CgtA; Rev 99.8 4.5E-19 9.7E-24 187.3 19.7 165 161-357 156-329 (335)
81 PRK05291 trmE tRNA modificatio 99.8 2.2E-19 4.8E-24 197.6 17.7 156 163-356 215-370 (449)
82 cd04138 H_N_K_Ras_like H-Ras/N 99.8 2.7E-19 5.8E-24 169.4 15.8 152 372-547 2-160 (162)
83 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.2E-19 7E-24 171.8 16.4 154 372-548 3-163 (172)
84 cd01897 NOG NOG1 is a nucleola 99.8 6E-19 1.3E-23 168.7 18.1 161 164-355 1-167 (168)
85 COG1084 Predicted GTPase [Gene 99.8 1.2E-18 2.7E-23 175.7 21.0 162 161-354 166-334 (346)
86 cd01868 Rab11_like Rab11-like. 99.8 2.8E-19 6.2E-24 170.5 15.7 155 371-547 3-163 (165)
87 PRK12297 obgE GTPase CgtA; Rev 99.8 5.9E-19 1.3E-23 190.8 19.9 162 372-551 159-329 (424)
88 cd01865 Rab3 Rab3 subfamily. 99.8 3.2E-19 6.9E-24 170.4 15.9 155 372-548 2-162 (165)
89 cd04112 Rab26 Rab26 subfamily. 99.8 6.7E-19 1.5E-23 172.6 18.5 157 372-549 1-163 (191)
90 KOG0098 GTPase Rab2, small G p 99.8 1.4E-19 3E-24 167.1 12.6 156 370-547 5-166 (216)
91 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 3.3E-19 7.1E-24 173.2 16.1 161 370-547 4-178 (182)
92 PRK00089 era GTPase Era; Revie 99.8 4.3E-19 9.4E-24 185.8 18.2 163 164-358 6-173 (292)
93 PRK04213 GTP-binding protein; 99.8 8E-19 1.7E-23 173.4 18.8 165 370-549 8-192 (201)
94 cd04176 Rap2 Rap2 subgroup. T 99.8 3E-19 6.4E-24 170.0 15.1 152 372-546 2-160 (163)
95 cd04128 Spg1 Spg1p. Spg1p (se 99.8 5.5E-19 1.2E-23 171.7 17.2 159 372-548 1-165 (182)
96 cd04127 Rab27A Rab27a subfamil 99.8 8.4E-19 1.8E-23 169.8 18.5 157 371-548 4-176 (180)
97 TIGR03596 GTPase_YlqF ribosome 99.8 3.9E-19 8.4E-24 184.1 16.9 162 263-432 12-175 (276)
98 cd04122 Rab14 Rab14 subfamily. 99.8 4.4E-19 9.5E-24 169.6 15.9 153 372-547 3-162 (166)
99 cd04134 Rho3 Rho3 subfamily. 99.8 3.4E-19 7.5E-24 174.3 15.5 160 372-548 1-173 (189)
100 cd01849 YlqF_related_GTPase Yl 99.8 2.4E-19 5.3E-24 169.6 13.6 151 274-430 1-155 (155)
101 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.3E-19 1.4E-23 169.4 16.6 158 373-550 2-166 (170)
102 cd04111 Rab39 Rab39 subfamily. 99.8 4.6E-19 9.9E-24 176.5 16.0 158 372-550 3-167 (211)
103 COG0370 FeoB Fe2+ transport sy 99.8 4.2E-19 9E-24 195.3 17.1 164 372-552 4-167 (653)
104 cd04116 Rab9 Rab9 subfamily. 99.8 6.6E-19 1.4E-23 168.9 16.3 155 370-546 4-168 (170)
105 PRK12296 obgE GTPase CgtA; Rev 99.8 5.2E-19 1.1E-23 193.4 17.4 166 161-358 157-342 (500)
106 cd04131 Rnd Rnd subfamily. Th 99.8 6.1E-19 1.3E-23 170.8 16.1 159 372-547 2-174 (178)
107 cd01864 Rab19 Rab19 subfamily. 99.8 1.8E-18 3.9E-23 165.1 19.0 155 371-546 3-163 (165)
108 PRK00454 engB GTP-binding prot 99.8 1.9E-18 4.2E-23 169.7 19.8 170 369-549 22-194 (196)
109 cd04149 Arf6 Arf6 subfamily. 99.8 3.5E-19 7.6E-24 170.9 14.1 149 371-545 9-166 (168)
110 cd00881 GTP_translation_factor 99.8 9.7E-19 2.1E-23 170.2 17.4 157 373-547 1-185 (189)
111 cd04119 RJL RJL (RabJ-Like) su 99.8 1.5E-18 3.3E-23 165.4 18.4 155 372-547 1-165 (168)
112 cd01898 Obg Obg subfamily. Th 99.8 8.1E-19 1.8E-23 168.0 16.5 158 165-354 2-169 (170)
113 cd04117 Rab15 Rab15 subfamily. 99.8 7.6E-19 1.6E-23 167.2 16.1 154 372-547 1-160 (161)
114 cd00877 Ran Ran (Ras-related n 99.8 8.3E-19 1.8E-23 167.9 16.3 154 372-548 1-158 (166)
115 PTZ00369 Ras-like protein; Pro 99.8 7.5E-19 1.6E-23 171.9 16.1 156 371-548 5-166 (189)
116 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.6E-19 1E-23 172.5 14.4 159 371-548 3-169 (183)
117 PRK12297 obgE GTPase CgtA; Rev 99.8 1.2E-18 2.6E-23 188.5 18.9 164 162-358 157-329 (424)
118 cd01859 MJ1464 MJ1464. This f 99.8 1.1E-18 2.4E-23 165.3 16.4 149 266-430 6-156 (156)
119 PRK12317 elongation factor 1-a 99.8 4.5E-19 9.8E-24 195.1 15.9 157 370-542 5-198 (425)
120 cd04143 Rhes_like Rhes_like su 99.8 7.3E-19 1.6E-23 178.7 16.2 155 372-548 1-170 (247)
121 cd01856 YlqF YlqF. Proteins o 99.8 9.9E-19 2.1E-23 168.2 16.2 159 263-430 10-170 (171)
122 cd04126 Rab20 Rab20 subfamily. 99.8 1E-18 2.2E-23 174.4 16.6 157 372-549 1-190 (220)
123 PRK09563 rbgA GTPase YlqF; Rev 99.8 8.2E-19 1.8E-23 182.6 16.5 162 264-433 16-179 (287)
124 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 8.8E-19 1.9E-23 175.8 15.9 161 371-548 13-187 (232)
125 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 7.5E-19 1.6E-23 163.5 14.3 135 264-431 3-139 (141)
126 COG0218 Predicted GTPase [Gene 99.8 4.1E-18 8.8E-23 162.1 19.4 169 370-549 23-197 (200)
127 cd04106 Rab23_lke Rab23-like s 99.8 2.8E-18 6.1E-23 162.9 18.5 154 372-546 1-160 (162)
128 TIGR02729 Obg_CgtA Obg family 99.8 1.5E-18 3.3E-23 183.1 18.4 163 161-355 155-328 (329)
129 cd01866 Rab2 Rab2 subfamily. 99.8 2.8E-18 6.1E-23 164.4 18.6 157 371-548 4-165 (168)
130 cd04132 Rho4_like Rho4-like su 99.8 7.8E-19 1.7E-23 171.3 14.9 161 372-549 1-167 (187)
131 PRK12298 obgE GTPase CgtA; Rev 99.8 1.5E-18 3.2E-23 186.8 18.4 165 162-358 158-335 (390)
132 cd01881 Obg_like The Obg-like 99.8 7.9E-19 1.7E-23 168.9 14.6 157 376-546 1-174 (176)
133 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.2E-18 9.1E-23 162.1 19.4 156 372-547 1-162 (164)
134 PLN03071 GTP-binding nuclear p 99.8 1.1E-18 2.3E-23 174.8 16.0 158 369-549 11-172 (219)
135 cd04160 Arfrp1 Arfrp1 subfamil 99.8 8.6E-19 1.9E-23 167.4 14.5 155 373-545 1-165 (167)
136 cd01861 Rab6 Rab6 subfamily. 99.8 2.3E-18 5E-23 163.3 17.4 154 372-547 1-160 (161)
137 cd04171 SelB SelB subfamily. 99.8 1.8E-18 4E-23 164.2 16.7 150 165-353 2-163 (164)
138 cd01871 Rac1_like Rac1-like su 99.8 1.6E-18 3.5E-23 167.3 16.3 158 372-546 2-172 (174)
139 PLN03110 Rab GTPase; Provision 99.8 1.3E-18 2.8E-23 173.9 16.0 158 370-549 11-174 (216)
140 smart00174 RHO Rho (Ras homolo 99.8 1.2E-18 2.5E-23 167.8 15.1 156 374-548 1-171 (174)
141 cd04110 Rab35 Rab35 subfamily. 99.8 1.6E-18 3.6E-23 171.0 16.5 157 370-548 5-166 (199)
142 KOG0080 GTPase Rab18, small G 99.8 5.6E-19 1.2E-23 158.7 11.8 156 370-547 10-172 (209)
143 TIGR02528 EutP ethanolamine ut 99.8 9.1E-19 2E-23 162.8 13.8 140 373-545 2-141 (142)
144 cd01875 RhoG RhoG subfamily. 99.8 1.7E-18 3.6E-23 169.8 16.3 161 371-548 3-176 (191)
145 cd01893 Miro1 Miro1 subfamily. 99.8 3.3E-18 7.1E-23 163.6 17.8 158 372-548 1-163 (166)
146 cd04118 Rab24 Rab24 subfamily. 99.8 1.6E-18 3.5E-23 170.0 16.0 160 372-549 1-166 (193)
147 cd01862 Rab7 Rab7 subfamily. 99.8 6.2E-18 1.4E-22 162.1 19.5 158 372-550 1-168 (172)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3E-18 6.5E-23 161.2 17.0 155 164-355 2-156 (157)
149 KOG0095 GTPase Rab30, small G 99.8 6.2E-19 1.3E-23 156.3 11.3 155 370-546 6-166 (213)
150 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-18 2.5E-23 168.0 14.3 157 372-545 1-170 (173)
151 cd04157 Arl6 Arl6 subfamily. 99.8 8.6E-19 1.9E-23 166.3 13.2 149 373-545 1-160 (162)
152 PF00009 GTP_EFTU: Elongation 99.8 1.1E-18 2.4E-23 170.6 14.3 154 163-356 3-187 (188)
153 cd04154 Arl2 Arl2 subfamily. 99.8 2.3E-18 5E-23 165.8 16.2 150 370-545 13-171 (173)
154 PRK09554 feoB ferrous iron tra 99.8 2.3E-18 4.9E-23 199.4 19.1 166 371-549 3-168 (772)
155 cd04125 RabA_like RabA-like su 99.8 3E-18 6.4E-23 167.5 16.7 156 372-549 1-162 (188)
156 cd01855 YqeH YqeH. YqeH is an 99.8 1.4E-18 3E-23 170.2 14.3 148 262-430 24-190 (190)
157 cd04113 Rab4 Rab4 subfamily. 99.8 6.1E-18 1.3E-22 160.6 18.2 154 372-546 1-159 (161)
158 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.7E-18 3.7E-23 164.5 14.3 152 372-545 1-157 (159)
159 COG1163 DRG Predicted GTPase [ 99.8 1.4E-18 3E-23 174.4 14.2 190 132-357 30-290 (365)
160 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.7E-18 1E-22 162.3 17.4 152 164-356 1-166 (168)
161 cd04146 RERG_RasL11_like RERG/ 99.8 1.6E-18 3.4E-23 165.5 14.1 154 373-548 1-163 (165)
162 TIGR00475 selB selenocysteine- 99.8 3.7E-18 8.1E-23 193.2 19.3 160 373-550 2-167 (581)
163 cd04115 Rab33B_Rab33A Rab33B/R 99.8 6E-18 1.3E-22 162.5 18.1 157 371-548 2-168 (170)
164 cd01895 EngA2 EngA2 subfamily. 99.8 9.1E-18 2E-22 160.5 19.2 163 163-354 2-173 (174)
165 KOG1423 Ras-like GTPase ERA [C 99.8 1.7E-18 3.6E-23 171.8 14.1 181 367-550 68-272 (379)
166 cd04151 Arl1 Arl1 subfamily. 99.8 1.2E-18 2.5E-23 165.2 12.6 152 373-546 1-157 (158)
167 smart00175 RAB Rab subfamily o 99.8 9.5E-18 2.1E-22 159.4 18.9 155 372-548 1-161 (164)
168 cd01860 Rab5_related Rab5-rela 99.8 8.8E-18 1.9E-22 159.6 18.3 155 372-547 2-161 (163)
169 CHL00071 tufA elongation facto 99.8 4.4E-18 9.5E-23 185.8 18.1 152 369-537 10-181 (409)
170 cd01892 Miro2 Miro2 subfamily. 99.8 3.1E-18 6.7E-23 164.5 14.8 158 370-548 3-165 (169)
171 cd04135 Tc10 TC10 subfamily. 99.8 4E-18 8.7E-23 164.0 15.5 159 372-547 1-172 (174)
172 KOG0079 GTP-binding protein H- 99.8 9.6E-19 2.1E-23 155.0 10.1 157 371-549 8-169 (198)
173 PRK10512 selenocysteinyl-tRNA- 99.8 7.5E-18 1.6E-22 191.3 20.0 160 373-549 2-166 (614)
174 smart00177 ARF ARF-like small 99.8 3.4E-18 7.3E-23 165.2 14.6 155 371-547 13-172 (175)
175 TIGR00487 IF-2 translation ini 99.8 7.4E-18 1.6E-22 189.9 19.6 159 369-546 85-247 (587)
176 cd04139 RalA_RalB RalA/RalB su 99.8 4.6E-18 1E-22 161.4 15.4 154 372-548 1-161 (164)
177 cd00880 Era_like Era (E. coli 99.8 1.3E-17 2.8E-22 156.3 18.2 162 376-547 1-162 (163)
178 cd04177 RSR1 RSR1 subgroup. R 99.8 7.2E-18 1.6E-22 161.6 16.7 155 372-547 2-162 (168)
179 cd04156 ARLTS1 ARLTS1 subfamil 99.8 6.1E-18 1.3E-22 160.3 15.6 153 373-546 1-159 (160)
180 cd01863 Rab18 Rab18 subfamily. 99.8 5.8E-18 1.2E-22 160.7 15.3 153 372-546 1-159 (161)
181 PRK04213 GTP-binding protein; 99.8 1.6E-17 3.6E-22 164.0 19.1 166 162-358 8-194 (201)
182 PRK09866 hypothetical protein; 99.8 2.2E-16 4.8E-21 172.9 29.2 118 419-546 229-350 (741)
183 cd01870 RhoA_like RhoA-like su 99.8 9.1E-18 2E-22 161.7 16.6 159 372-547 2-173 (175)
184 cd00157 Rho Rho (Ras homology) 99.8 5.4E-18 1.2E-22 162.4 14.7 159 372-546 1-170 (171)
185 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.2E-18 7E-23 162.0 13.0 152 373-546 1-157 (158)
186 PLN00223 ADP-ribosylation fact 99.8 5.1E-18 1.1E-22 164.8 14.5 153 371-549 17-178 (181)
187 cd04158 ARD1 ARD1 subfamily. 99.8 7E-18 1.5E-22 161.9 15.3 150 373-548 1-160 (169)
188 KOG1191 Mitochondrial GTPase [ 99.8 3.3E-18 7.1E-23 180.1 13.9 165 163-356 268-450 (531)
189 TIGR00231 small_GTP small GTP- 99.8 5E-18 1.1E-22 158.9 13.8 150 372-545 2-160 (161)
190 cd04147 Ras_dva Ras-dva subfam 99.8 7.8E-18 1.7E-22 166.0 15.8 156 373-549 1-163 (198)
191 COG0370 FeoB Fe2+ transport sy 99.8 6.5E-18 1.4E-22 186.0 16.6 158 163-357 3-165 (653)
192 cd04114 Rab30 Rab30 subfamily. 99.8 1.4E-17 3E-22 159.4 16.9 155 371-547 7-167 (169)
193 PTZ00133 ADP-ribosylation fact 99.8 7.7E-18 1.7E-22 163.8 15.0 157 371-549 17-178 (182)
194 TIGR00437 feoB ferrous iron tr 99.8 8.3E-18 1.8E-22 190.5 17.3 154 378-548 1-154 (591)
195 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.3E-17 2.9E-22 182.5 18.2 157 163-356 203-360 (442)
196 cd01889 SelB_euk SelB subfamil 99.8 1.5E-17 3.1E-22 163.2 16.6 153 165-357 2-187 (192)
197 PRK05306 infB translation init 99.8 1.3E-17 2.8E-22 192.0 18.7 158 369-546 288-449 (787)
198 cd01873 RhoBTB RhoBTB subfamil 99.8 1.1E-17 2.4E-22 164.3 15.6 159 372-547 3-194 (195)
199 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.5E-17 3.3E-22 160.5 16.3 153 371-545 15-172 (174)
200 cd04163 Era Era subfamily. Er 99.8 2.7E-17 5.9E-22 155.8 17.7 160 163-354 3-167 (168)
201 cd01883 EF1_alpha Eukaryotic e 99.8 8.7E-18 1.9E-22 168.3 14.9 151 373-538 1-194 (219)
202 cd04103 Centaurin_gamma Centau 99.8 1.6E-17 3.5E-22 157.6 16.0 148 372-546 1-156 (158)
203 cd04123 Rab21 Rab21 subfamily. 99.8 1.6E-17 3.4E-22 157.3 16.0 155 372-547 1-160 (162)
204 cd01879 FeoB Ferrous iron tran 99.8 1.8E-17 3.9E-22 156.5 16.2 153 168-355 1-156 (158)
205 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.2E-17 2.6E-22 166.7 15.6 160 372-548 2-175 (222)
206 PRK12736 elongation factor Tu; 99.8 1.7E-17 3.7E-22 180.2 18.1 161 370-547 11-199 (394)
207 KOG0091 GTPase Rab39, small G 99.8 3.1E-18 6.8E-23 154.3 10.1 156 372-548 9-172 (213)
208 smart00176 RAN Ran (Ras-relate 99.8 1.3E-17 2.9E-22 164.1 15.5 149 377-548 1-153 (200)
209 cd01890 LepA LepA subfamily. 99.8 2.5E-17 5.3E-22 159.3 17.1 152 165-356 2-177 (179)
210 PLN03108 Rab family protein; P 99.8 3.3E-17 7.2E-22 163.0 18.5 157 370-548 5-167 (210)
211 cd04148 RGK RGK subfamily. Th 99.8 2.4E-17 5.2E-22 165.3 17.6 155 372-549 1-163 (221)
212 PRK15467 ethanolamine utilizat 99.8 1.7E-17 3.6E-22 157.5 15.5 145 373-550 3-148 (158)
213 cd00881 GTP_translation_factor 99.8 2.4E-17 5.1E-22 160.4 16.9 152 165-356 1-187 (189)
214 cd04168 TetM_like Tet(M)-like 99.8 2.9E-17 6.4E-22 165.9 18.0 161 373-548 1-234 (237)
215 cd01881 Obg_like The Obg-like 99.8 7.8E-18 1.7E-22 161.9 13.1 155 168-354 1-175 (176)
216 cd00154 Rab Rab family. Rab G 99.7 3.2E-17 7E-22 153.9 16.7 153 372-545 1-158 (159)
217 COG2262 HflX GTPases [General 99.7 2.8E-17 6E-22 171.0 17.5 166 367-550 188-357 (411)
218 TIGR03598 GTPase_YsxC ribosome 99.7 3.8E-17 8.2E-22 158.4 17.3 159 157-345 12-179 (179)
219 cd01886 EF-G Elongation factor 99.7 3.8E-17 8.2E-22 168.0 17.8 113 373-500 1-130 (270)
220 cd04161 Arl2l1_Arl13_like Arl2 99.7 1E-17 2.2E-22 160.5 12.7 152 373-546 1-166 (167)
221 KOG1423 Ras-like GTPase ERA [C 99.7 1.6E-17 3.4E-22 165.0 13.6 168 163-357 72-272 (379)
222 cd04137 RheB Rheb (Ras Homolog 99.7 3E-17 6.5E-22 159.0 15.5 155 372-549 2-163 (180)
223 cd01888 eIF2_gamma eIF2-gamma 99.7 6.8E-17 1.5E-21 159.9 18.2 160 372-548 1-198 (203)
224 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.1E-17 6.7E-22 161.5 15.6 167 165-359 2-187 (196)
225 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2E-17 4.2E-22 158.1 13.5 152 373-545 1-162 (164)
226 PRK12735 elongation factor Tu; 99.7 4.4E-17 9.5E-22 177.2 17.7 151 369-536 10-180 (396)
227 smart00178 SAR Sar1p-like memb 99.7 3.3E-17 7.1E-22 159.6 14.9 150 371-546 17-182 (184)
228 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.9E-17 4.1E-22 164.5 13.4 144 165-347 1-185 (208)
229 TIGR00485 EF-Tu translation el 99.7 7.8E-17 1.7E-21 175.4 19.5 150 369-535 10-179 (394)
230 PRK00454 engB GTP-binding prot 99.7 1.4E-16 3.1E-21 156.4 19.5 167 160-356 21-194 (196)
231 CHL00189 infB translation init 99.7 5.4E-17 1.2E-21 185.3 18.8 161 369-548 242-409 (742)
232 PLN03127 Elongation factor Tu; 99.7 8E-17 1.7E-21 176.7 19.5 162 370-548 60-251 (447)
233 cd04178 Nucleostemin_like Nucl 99.7 2.8E-17 6.1E-22 157.5 13.9 143 274-430 1-172 (172)
234 KOG0093 GTPase Rab3, small G p 99.7 2.3E-17 5E-22 146.2 12.1 158 371-549 21-183 (193)
235 cd01891 TypA_BipA TypA (tyrosi 99.7 7.7E-17 1.7E-21 158.4 17.4 144 164-347 3-173 (194)
236 KOG0088 GTPase Rab21, small G 99.7 3.9E-18 8.5E-23 152.7 7.2 157 370-547 12-173 (218)
237 COG0532 InfB Translation initi 99.7 6.9E-17 1.5E-21 173.3 18.1 154 162-356 4-170 (509)
238 cd04165 GTPBP1_like GTPBP1-lik 99.7 7.6E-17 1.7E-21 161.4 17.3 155 373-545 1-219 (224)
239 TIGR01393 lepA GTP-binding pro 99.7 6.4E-17 1.4E-21 183.3 18.6 160 371-549 3-180 (595)
240 KOG0083 GTPase Rab26/Rab37, sm 99.7 2.6E-18 5.6E-23 149.6 5.2 156 375-551 1-162 (192)
241 PRK00049 elongation factor Tu; 99.7 7.5E-17 1.6E-21 175.3 17.9 151 369-536 10-180 (396)
242 TIGR00491 aIF-2 translation in 99.7 7.8E-17 1.7E-21 181.3 18.6 163 370-548 3-215 (590)
243 cd00876 Ras Ras family. The R 99.7 1.3E-16 2.9E-21 150.6 17.3 152 373-546 1-158 (160)
244 cd00879 Sar1 Sar1 subfamily. 99.7 7.7E-17 1.7E-21 157.6 15.9 151 371-547 19-189 (190)
245 PF01926 MMR_HSR1: 50S ribosom 99.7 5E-17 1.1E-21 145.9 13.3 116 373-495 1-116 (116)
246 cd01861 Rab6 Rab6 subfamily. 99.7 9.1E-17 2E-21 152.3 15.9 151 165-354 2-160 (161)
247 KOG0086 GTPase Rab4, small G p 99.7 5.4E-17 1.2E-21 144.6 13.0 157 369-547 7-169 (214)
248 KOG1489 Predicted GTP-binding 99.7 5.3E-17 1.2E-21 162.3 14.1 161 161-353 194-364 (366)
249 cd04155 Arl3 Arl3 subfamily. 99.7 1E-16 2.2E-21 154.1 15.8 152 371-546 14-172 (173)
250 PF01926 MMR_HSR1: 50S ribosom 99.7 4.4E-17 9.5E-22 146.2 12.2 116 165-312 1-116 (116)
251 cd04159 Arl10_like Arl10-like 99.7 1E-16 2.2E-21 150.7 15.2 152 374-546 2-158 (159)
252 cd01876 YihA_EngB The YihA (En 99.7 2.8E-16 6.1E-21 149.3 18.4 164 373-547 1-169 (170)
253 cd01884 EF_Tu EF-Tu subfamily. 99.7 1E-16 2.3E-21 157.0 15.7 141 164-344 3-171 (195)
254 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.5E-16 3.3E-21 156.5 17.0 173 372-550 1-185 (196)
255 PRK12289 GTPase RsgA; Reviewed 99.7 7.9E-17 1.7E-21 170.7 15.9 144 268-435 85-239 (352)
256 PRK05306 infB translation init 99.7 8.9E-17 1.9E-21 185.1 17.6 153 160-353 287-449 (787)
257 cd01896 DRG The developmentall 99.7 1.4E-16 3E-21 160.8 16.8 156 165-356 2-226 (233)
258 PF00071 Ras: Ras family; Int 99.7 8.6E-17 1.9E-21 152.8 14.4 154 373-548 1-160 (162)
259 PLN03126 Elongation factor Tu; 99.7 1.8E-16 3.9E-21 174.7 19.1 151 370-537 80-250 (478)
260 TIGR00483 EF-1_alpha translati 99.7 8.5E-17 1.8E-21 177.0 16.5 157 370-542 6-200 (426)
261 KOG1489 Predicted GTP-binding 99.7 6.8E-17 1.5E-21 161.6 14.0 159 372-546 197-364 (366)
262 TIGR00487 IF-2 translation ini 99.7 1.2E-16 2.5E-21 180.2 17.7 151 162-353 86-247 (587)
263 cd04124 RabL2 RabL2 subfamily. 99.7 2.1E-16 4.7E-21 150.3 17.0 153 165-356 2-158 (161)
264 PRK09554 feoB ferrous iron tra 99.7 1.3E-16 2.7E-21 184.9 18.1 160 164-356 4-168 (772)
265 cd04160 Arfrp1 Arfrp1 subfamil 99.7 9.8E-17 2.1E-21 153.2 14.3 151 165-353 1-166 (167)
266 TIGR03597 GTPase_YqeH ribosome 99.7 5.7E-17 1.2E-21 173.7 14.0 210 263-501 54-281 (360)
267 cd04142 RRP22 RRP22 subfamily. 99.7 2.2E-16 4.7E-21 155.6 17.0 161 165-356 2-174 (198)
268 cd01896 DRG The developmentall 99.7 2E-16 4.2E-21 159.7 17.0 153 373-548 2-225 (233)
269 PRK05124 cysN sulfate adenylyl 99.7 9.9E-17 2.1E-21 177.6 16.2 156 370-541 26-217 (474)
270 TIGR01394 TypA_BipA GTP-bindin 99.7 2E-16 4.4E-21 178.7 18.7 159 372-549 2-191 (594)
271 PRK10218 GTP-binding protein; 99.7 3E-16 6.6E-21 177.1 20.0 147 371-536 5-172 (607)
272 cd04154 Arl2 Arl2 subfamily. 99.7 1.8E-16 4E-21 152.6 15.5 149 163-353 14-172 (173)
273 cd04145 M_R_Ras_like M-Ras/R-R 99.7 4.1E-16 8.9E-21 148.2 17.7 152 164-355 3-163 (164)
274 cd04129 Rho2 Rho2 subfamily. 99.7 2.6E-16 5.6E-21 153.7 16.5 159 372-548 2-172 (187)
275 CHL00189 infB translation init 99.7 1.8E-16 3.8E-21 181.0 17.6 154 161-355 242-409 (742)
276 TIGR02034 CysN sulfate adenyly 99.7 1.2E-16 2.6E-21 174.2 15.5 153 372-540 1-188 (406)
277 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5.3E-16 1.1E-20 146.8 17.5 152 164-355 2-161 (162)
278 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.2E-16 6.9E-21 149.6 16.1 154 164-356 3-164 (166)
279 cd01885 EF2 EF2 (for archaea a 99.7 3.7E-16 8E-21 155.8 17.0 152 372-537 1-200 (222)
280 cd01865 Rab3 Rab3 subfamily. 99.7 4.4E-16 9.6E-21 148.7 17.0 154 164-356 2-163 (165)
281 PRK15467 ethanolamine utilizat 99.7 1.6E-16 3.5E-21 150.7 13.7 144 165-358 3-149 (158)
282 cd04106 Rab23_lke Rab23-like s 99.7 3.4E-16 7.3E-21 148.6 15.8 151 165-354 2-161 (162)
283 PRK05506 bifunctional sulfate 99.7 1.2E-16 2.6E-21 183.9 15.0 153 371-539 24-211 (632)
284 COG1084 Predicted GTPase [Gene 99.7 5.1E-16 1.1E-20 156.9 17.4 163 370-547 167-334 (346)
285 cd04169 RF3 RF3 subfamily. Pe 99.7 6E-16 1.3E-20 159.0 18.3 114 372-500 3-137 (267)
286 TIGR00491 aIF-2 translation in 99.7 8.9E-16 1.9E-20 172.8 21.3 154 162-356 3-216 (590)
287 cd04149 Arf6 Arf6 subfamily. 99.7 2.9E-16 6.2E-21 150.7 14.7 149 163-353 9-167 (168)
288 KOG0410 Predicted GTP binding 99.7 1.1E-16 2.3E-21 160.1 12.0 189 129-357 145-342 (410)
289 cd01868 Rab11_like Rab11-like. 99.7 4.5E-16 9.8E-21 148.3 15.9 153 164-355 4-164 (165)
290 smart00175 RAB Rab subfamily o 99.7 6.7E-16 1.4E-20 146.7 17.0 153 165-356 2-162 (164)
291 cd04151 Arl1 Arl1 subfamily. 99.7 4.1E-16 8.9E-21 147.7 15.5 147 165-353 1-157 (158)
292 KOG0462 Elongation factor-type 99.7 3.4E-16 7.4E-21 166.2 16.3 161 370-549 59-235 (650)
293 cd01867 Rab8_Rab10_Rab13_like 99.7 5.6E-16 1.2E-20 148.3 16.3 155 163-356 3-165 (167)
294 TIGR00475 selB selenocysteine- 99.7 6.1E-16 1.3E-20 175.2 18.8 155 165-359 2-169 (581)
295 cd01864 Rab19 Rab19 subfamily. 99.7 7.4E-16 1.6E-20 147.0 16.6 153 163-354 3-164 (165)
296 cd04119 RJL RJL (RabJ-Like) su 99.7 8.1E-16 1.7E-20 146.5 16.8 152 165-355 2-166 (168)
297 cd04167 Snu114p Snu114p subfam 99.7 4.2E-16 9E-21 155.5 15.4 153 372-538 1-192 (213)
298 cd04136 Rap_like Rap-like subf 99.7 5.2E-16 1.1E-20 147.4 15.2 152 164-355 2-162 (163)
299 PRK04004 translation initiatio 99.7 9E-16 2E-20 173.5 19.6 161 370-546 5-215 (586)
300 COG0536 Obg Predicted GTPase [ 99.7 3.4E-16 7.4E-21 158.7 14.4 164 373-550 161-334 (369)
301 cd04158 ARD1 ARD1 subfamily. 99.7 5.5E-16 1.2E-20 148.7 15.3 152 165-358 1-163 (169)
302 cd04112 Rab26 Rab26 subfamily. 99.7 7.4E-16 1.6E-20 151.0 16.4 155 165-358 2-165 (191)
303 cd01860 Rab5_related Rab5-rela 99.7 5.6E-16 1.2E-20 147.2 15.0 152 164-355 2-162 (163)
304 PRK05433 GTP-binding protein L 99.7 7.9E-16 1.7E-20 174.6 18.8 161 370-549 6-184 (600)
305 cd01866 Rab2 Rab2 subfamily. 99.7 8.6E-16 1.9E-20 147.2 16.3 153 163-356 4-166 (168)
306 cd01888 eIF2_gamma eIF2-gamma 99.7 6.2E-16 1.3E-20 153.0 15.7 154 165-357 2-200 (203)
307 smart00173 RAS Ras subfamily o 99.7 9.5E-16 2.1E-20 145.9 16.3 152 165-356 2-162 (164)
308 PTZ00141 elongation factor 1- 99.7 5.2E-16 1.1E-20 170.5 16.5 154 371-539 7-203 (446)
309 cd04175 Rap1 Rap1 subgroup. T 99.7 7.4E-16 1.6E-20 146.8 15.3 153 164-356 2-163 (164)
310 cd04157 Arl6 Arl6 subfamily. 99.7 7E-16 1.5E-20 146.3 14.9 147 165-353 1-161 (162)
311 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.7E-16 1.2E-20 146.8 14.1 147 165-353 1-159 (160)
312 cd04120 Rab12 Rab12 subfamily. 99.7 1.3E-15 2.8E-20 150.3 17.0 154 165-357 2-164 (202)
313 cd04109 Rab28 Rab28 subfamily. 99.7 1.3E-15 2.7E-20 152.3 17.1 154 165-357 2-167 (215)
314 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 8.1E-16 1.8E-20 148.4 15.2 148 164-353 16-173 (174)
315 TIGR00157 ribosome small subun 99.7 8E-16 1.7E-20 156.2 15.6 143 268-435 32-186 (245)
316 cd00877 Ran Ran (Ras-related n 99.7 9.1E-16 2E-20 146.8 15.2 153 165-356 2-159 (166)
317 cd04144 Ras2 Ras2 subfamily. 99.7 1.2E-15 2.6E-20 149.3 16.3 154 165-358 1-165 (190)
318 cd04140 ARHI_like ARHI subfami 99.7 1.2E-15 2.7E-20 145.6 16.0 150 164-353 2-162 (165)
319 cd04170 EF-G_bact Elongation f 99.7 1.6E-15 3.5E-20 156.7 17.9 113 373-500 1-130 (268)
320 cd04176 Rap2 Rap2 subgroup. T 99.7 1.1E-15 2.5E-20 145.3 15.5 152 164-355 2-162 (163)
321 smart00178 SAR Sar1p-like memb 99.7 1.1E-15 2.5E-20 148.8 15.5 150 163-354 17-183 (184)
322 cd00880 Era_like Era (E. coli 99.7 1.9E-15 4.1E-20 141.5 16.5 154 168-354 1-162 (163)
323 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.3E-15 2.8E-20 144.7 15.4 147 165-353 2-158 (159)
324 cd01862 Rab7 Rab7 subfamily. 99.7 2.3E-15 5E-20 144.2 17.1 154 165-357 2-168 (172)
325 cd04127 Rab27A Rab27a subfamil 99.7 1.6E-15 3.4E-20 146.9 16.0 155 163-356 4-177 (180)
326 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.2E-15 2.5E-20 148.5 15.1 155 164-358 4-172 (183)
327 cd04110 Rab35 Rab35 subfamily. 99.7 2E-15 4.4E-20 148.9 16.8 156 163-357 6-168 (199)
328 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.4E-15 5.3E-20 143.0 16.7 153 165-355 2-163 (164)
329 PTZ00369 Ras-like protein; Pro 99.7 1.8E-15 3.9E-20 148.0 15.9 156 163-358 5-169 (189)
330 PRK12739 elongation factor G; 99.7 1.3E-15 2.8E-20 176.8 17.5 116 370-500 7-139 (691)
331 cd04139 RalA_RalB RalA/RalB su 99.7 3.1E-15 6.7E-20 141.9 17.0 152 165-356 2-162 (164)
332 TIGR03680 eif2g_arch translati 99.7 1.7E-15 3.6E-20 165.4 17.1 161 371-548 4-195 (406)
333 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.8E-15 6.1E-20 148.1 17.2 155 165-358 2-170 (201)
334 cd04113 Rab4 Rab4 subfamily. 99.7 2.1E-15 4.6E-20 143.1 15.7 151 165-354 2-160 (161)
335 cd04121 Rab40 Rab40 subfamily. 99.7 3.2E-15 6.8E-20 146.0 17.2 156 163-357 6-168 (189)
336 COG1163 DRG Predicted GTPase [ 99.7 9.3E-16 2E-20 154.2 13.6 160 367-548 59-288 (365)
337 cd04143 Rhes_like Rhes_like su 99.7 2.7E-15 5.9E-20 152.6 17.4 176 165-385 2-196 (247)
338 smart00177 ARF ARF-like small 99.7 2.4E-15 5.1E-20 145.3 16.1 151 163-355 13-173 (175)
339 PLN03118 Rab family protein; P 99.7 1.9E-15 4E-20 150.6 15.7 155 163-357 14-178 (211)
340 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.3E-15 7.1E-20 143.9 16.9 154 164-357 3-165 (172)
341 cd04122 Rab14 Rab14 subfamily. 99.7 2.7E-15 5.9E-20 143.3 16.2 150 164-355 3-163 (166)
342 cd04118 Rab24 Rab24 subfamily. 99.7 2.5E-15 5.3E-20 147.4 16.3 154 165-357 2-167 (193)
343 PRK10512 selenocysteinyl-tRNA- 99.7 3E-15 6.5E-20 170.1 19.3 153 165-357 2-167 (614)
344 KOG0395 Ras-related GTPase [Ge 99.7 1.7E-15 3.6E-20 148.2 14.8 157 371-550 3-166 (196)
345 PRK13796 GTPase YqeH; Provisio 99.7 1.3E-15 2.9E-20 163.4 15.5 145 266-432 62-222 (365)
346 PRK12317 elongation factor 1-a 99.7 7.9E-16 1.7E-20 169.4 13.9 145 163-346 6-195 (425)
347 TIGR00231 small_GTP small GTP- 99.6 7.6E-16 1.7E-20 144.0 11.6 154 164-352 2-160 (161)
348 cd00879 Sar1 Sar1 subfamily. 99.6 2.4E-15 5.2E-20 147.0 15.5 150 163-354 19-189 (190)
349 cd01863 Rab18 Rab18 subfamily. 99.6 2.7E-15 5.9E-20 142.2 15.4 151 165-354 2-160 (161)
350 PRK00007 elongation factor G; 99.6 1.4E-15 3.1E-20 176.4 16.1 146 370-534 9-171 (693)
351 cd00876 Ras Ras family. The R 99.6 5E-15 1.1E-19 139.8 16.7 150 165-354 1-159 (160)
352 PTZ00132 GTP-binding nuclear p 99.6 5.2E-15 1.1E-19 147.8 17.5 159 370-551 8-170 (215)
353 cd00154 Rab Rab family. Rab G 99.6 3.2E-15 7E-20 140.3 15.0 150 164-352 1-158 (159)
354 TIGR00437 feoB ferrous iron tr 99.6 2.1E-15 4.5E-20 171.1 16.3 151 170-355 1-154 (591)
355 smart00174 RHO Rho (Ras homolo 99.6 2.9E-15 6.2E-20 144.1 14.8 150 166-355 1-171 (174)
356 PRK12288 GTPase RsgA; Reviewed 99.6 2.5E-15 5.4E-20 159.3 15.6 141 270-435 118-272 (347)
357 PLN00223 ADP-ribosylation fact 99.6 4.8E-15 1E-19 144.0 16.4 152 163-356 17-178 (181)
358 cd04147 Ras_dva Ras-dva subfam 99.6 3.3E-15 7.2E-20 147.2 15.4 152 165-356 1-163 (198)
359 cd01892 Miro2 Miro2 subfamily. 99.6 5.2E-15 1.1E-19 142.0 16.4 153 163-356 4-166 (169)
360 cd01874 Cdc42 Cdc42 subfamily. 99.6 3.6E-15 7.8E-20 144.0 15.2 150 164-353 2-172 (175)
361 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.8E-15 1E-19 142.4 15.9 154 165-357 2-166 (170)
362 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.2E-15 9E-20 140.6 15.2 147 165-353 1-157 (158)
363 cd01893 Miro1 Miro1 subfamily. 99.6 4.3E-15 9.4E-20 142.0 15.4 150 165-355 2-163 (166)
364 TIGR01394 TypA_BipA GTP-bindin 99.6 3.9E-15 8.4E-20 168.4 17.5 155 165-359 3-194 (594)
365 COG0532 InfB Translation initi 99.6 3.6E-15 7.9E-20 160.2 16.3 161 370-549 4-170 (509)
366 cd04132 Rho4_like Rho4-like su 99.6 5E-15 1.1E-19 144.4 16.0 155 165-359 2-170 (187)
367 KOG1145 Mitochondrial translat 99.6 5.7E-15 1.2E-19 156.8 17.4 161 368-547 150-314 (683)
368 PRK00741 prfC peptide chain re 99.6 5.8E-15 1.3E-19 164.9 18.5 117 369-500 8-145 (526)
369 PTZ00133 ADP-ribosylation fact 99.6 5.1E-15 1.1E-19 143.9 15.9 153 164-358 18-180 (182)
370 TIGR02528 EutP ethanolamine ut 99.6 2.3E-15 5.1E-20 139.8 12.8 136 165-352 2-141 (142)
371 COG1161 Predicted GTPases [Gen 99.6 1.7E-15 3.7E-20 159.5 13.1 163 263-433 25-190 (322)
372 CHL00071 tufA elongation facto 99.6 3.5E-15 7.7E-20 163.0 16.1 154 163-356 12-211 (409)
373 cd04168 TetM_like Tet(M)-like 99.6 6E-15 1.3E-19 149.1 16.5 114 165-318 1-131 (237)
374 cd04114 Rab30 Rab30 subfamily. 99.6 6.1E-15 1.3E-19 141.0 15.7 153 163-354 7-167 (169)
375 PRK04000 translation initiatio 99.6 8.8E-15 1.9E-19 159.7 18.9 164 369-549 7-201 (411)
376 PLN03071 GTP-binding nuclear p 99.6 4.3E-15 9.4E-20 148.7 15.3 156 162-357 12-173 (219)
377 TIGR01393 lepA GTP-binding pro 99.6 5.5E-15 1.2E-19 167.6 17.9 156 164-359 4-183 (595)
378 PF00025 Arf: ADP-ribosylation 99.6 4.3E-15 9.3E-20 143.5 14.7 156 370-547 13-174 (175)
379 cd04123 Rab21 Rab21 subfamily. 99.6 8.4E-15 1.8E-19 138.5 16.4 152 165-355 2-161 (162)
380 TIGR00484 EF-G translation elo 99.6 4E-15 8.7E-20 172.8 17.1 147 370-535 9-172 (689)
381 COG0536 Obg Predicted GTPase [ 99.6 3.5E-15 7.6E-20 151.4 14.4 165 163-359 159-336 (369)
382 cd04146 RERG_RasL11_like RERG/ 99.6 4.9E-15 1.1E-19 141.3 14.8 152 165-355 1-163 (165)
383 cd04125 RabA_like RabA-like su 99.6 9.8E-15 2.1E-19 142.6 17.1 155 164-357 1-163 (188)
384 KOG1145 Mitochondrial translat 99.6 2.2E-15 4.7E-20 159.9 13.3 152 161-353 151-313 (683)
385 cd00157 Rho Rho (Ras homology) 99.6 3.6E-15 7.8E-20 142.7 13.7 149 165-353 2-170 (171)
386 cd04104 p47_IIGP_like p47 (47- 99.6 8.1E-15 1.8E-19 144.3 16.4 167 372-551 2-186 (197)
387 cd04117 Rab15 Rab15 subfamily. 99.6 1.2E-14 2.6E-19 138.3 17.0 151 165-354 2-160 (161)
388 cd01899 Ygr210 Ygr210 subfamil 99.6 7.1E-15 1.5E-19 154.0 16.4 161 166-358 1-271 (318)
389 cd01886 EF-G Elongation factor 99.6 4.9E-15 1.1E-19 152.5 14.7 114 165-318 1-131 (270)
390 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.1E-14 2.4E-19 141.5 16.4 153 165-357 2-167 (182)
391 PLN03110 Rab GTPase; Provision 99.6 1.1E-14 2.3E-19 145.7 16.5 157 163-358 12-176 (216)
392 cd01899 Ygr210 Ygr210 subfamil 99.6 1.6E-14 3.5E-19 151.3 18.6 87 374-468 1-110 (318)
393 cd04102 RabL3 RabL3 (Rab-like3 99.6 5.4E-15 1.2E-19 145.6 14.1 148 372-536 1-177 (202)
394 cd01876 YihA_EngB The YihA (En 99.6 2E-14 4.3E-19 136.5 17.5 159 166-354 2-169 (170)
395 cd01883 EF1_alpha Eukaryotic e 99.6 4.5E-15 9.8E-20 148.6 13.6 142 165-345 1-194 (219)
396 KOG0097 GTPase Rab14, small G 99.6 6.7E-15 1.5E-19 129.5 12.8 156 371-549 11-174 (215)
397 PRK12736 elongation factor Tu; 99.6 1.1E-14 2.4E-19 158.3 17.7 155 163-357 12-202 (394)
398 cd04135 Tc10 TC10 subfamily. 99.6 9.2E-15 2E-19 140.6 15.1 150 165-354 2-172 (174)
399 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.4E-14 3E-19 139.1 16.1 154 164-355 3-168 (170)
400 cd00882 Ras_like_GTPase Ras-li 99.6 1E-14 2.2E-19 134.8 14.7 150 376-545 1-156 (157)
401 cd04155 Arl3 Arl3 subfamily. 99.6 1.1E-14 2.4E-19 139.9 15.4 149 163-353 14-172 (173)
402 cd04134 Rho3 Rho3 subfamily. 99.6 6.8E-15 1.5E-19 143.9 14.1 153 165-357 2-175 (189)
403 cd04126 Rab20 Rab20 subfamily. 99.6 9.2E-15 2E-19 145.9 15.2 151 165-357 2-191 (220)
404 cd04133 Rop_like Rop subfamily 99.6 1.6E-14 3.6E-19 139.4 16.4 152 164-355 2-172 (176)
405 cd04137 RheB Rheb (Ras Homolog 99.6 1.7E-14 3.6E-19 139.7 16.6 156 164-359 2-166 (180)
406 PRK05433 GTP-binding protein L 99.6 1.5E-14 3.2E-19 164.3 18.5 157 163-359 7-187 (600)
407 PRK10218 GTP-binding protein; 99.6 1.3E-14 2.8E-19 163.9 18.0 157 163-359 5-198 (607)
408 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1E-14 2.2E-19 140.4 14.7 148 165-352 2-170 (173)
409 PRK04004 translation initiatio 99.6 1.3E-14 2.8E-19 164.1 17.9 153 162-355 5-217 (586)
410 KOG0081 GTPase Rab27, small G 99.6 9.7E-16 2.1E-20 137.6 6.5 156 371-547 9-179 (219)
411 cd01871 Rac1_like Rac1-like su 99.6 1.3E-14 2.8E-19 140.1 14.9 151 164-354 2-173 (174)
412 cd04148 RGK RGK subfamily. Th 99.6 1.6E-14 3.4E-19 144.9 16.1 152 165-357 2-164 (221)
413 cd04159 Arl10_like Arl10-like 99.6 1.6E-14 3.5E-19 135.6 15.2 147 166-353 2-158 (159)
414 cd04161 Arl2l1_Arl13_like Arl2 99.6 8E-15 1.7E-19 140.4 13.3 147 165-353 1-166 (167)
415 cd04116 Rab9 Rab9 subfamily. 99.6 2.3E-14 5.1E-19 137.3 16.4 153 163-354 5-169 (170)
416 cd04177 RSR1 RSR1 subgroup. R 99.6 2.4E-14 5.1E-19 137.1 16.3 152 164-355 2-163 (168)
417 PLN03108 Rab family protein; P 99.6 2.6E-14 5.5E-19 142.3 16.7 155 163-356 6-168 (210)
418 COG5256 TEF1 Translation elong 99.6 1.6E-14 3.4E-19 150.4 15.4 154 371-540 7-202 (428)
419 PRK12735 elongation factor Tu; 99.6 1.7E-14 3.6E-19 157.1 16.4 154 163-356 12-203 (396)
420 PLN00043 elongation factor 1-a 99.6 1.5E-14 3.3E-19 158.9 16.0 154 371-539 7-203 (447)
421 COG3596 Predicted GTPase [Gene 99.6 2.2E-14 4.7E-19 142.0 15.2 178 371-558 39-231 (296)
422 cd04111 Rab39 Rab39 subfamily. 99.6 1.8E-14 3.9E-19 143.4 14.9 156 164-358 3-168 (211)
423 cd04131 Rnd Rnd subfamily. Th 99.6 2.3E-14 5.1E-19 138.7 15.2 150 164-353 2-173 (178)
424 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.4E-14 7.3E-19 142.3 16.7 149 165-353 1-220 (224)
425 cd01870 RhoA_like RhoA-like su 99.6 2.4E-14 5.3E-19 137.8 15.1 151 164-354 2-173 (175)
426 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.3E-14 5E-19 136.8 14.7 146 165-352 1-162 (164)
427 KOG0073 GTP-binding ADP-ribosy 99.6 4.9E-14 1.1E-18 128.0 15.7 156 371-547 16-176 (185)
428 PRK00098 GTPase RsgA; Reviewed 99.6 1.1E-14 2.5E-19 152.2 13.5 142 269-434 77-230 (298)
429 PLN03127 Elongation factor Tu; 99.6 3E-14 6.6E-19 156.4 17.4 155 163-357 61-253 (447)
430 KOG0092 GTPase Rab5/YPT51 and 99.6 1.3E-14 2.7E-19 135.8 12.0 157 164-359 6-170 (200)
431 KOG1424 Predicted GTP-binding 99.6 8.1E-15 1.7E-19 155.3 12.0 165 264-432 166-371 (562)
432 PRK13351 elongation factor G; 99.6 3E-14 6.5E-19 165.9 18.0 116 370-500 7-139 (687)
433 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 2.7E-14 5.8E-19 138.7 14.6 151 163-353 5-177 (182)
434 PRK00049 elongation factor Tu; 99.6 2.9E-14 6.3E-19 155.1 16.6 154 163-356 12-203 (396)
435 cd01875 RhoG RhoG subfamily. 99.6 4.2E-14 9.2E-19 138.6 16.1 153 164-356 4-177 (191)
436 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 7.2E-14 1.6E-18 140.4 18.1 154 163-356 13-188 (232)
437 TIGR00503 prfC peptide chain r 99.6 3.9E-14 8.4E-19 158.3 17.9 116 369-499 9-145 (527)
438 KOG0084 GTPase Rab1/YPT1, smal 99.6 2.8E-14 6.2E-19 134.0 14.0 156 163-359 9-175 (205)
439 COG3596 Predicted GTPase [Gene 99.6 1.7E-14 3.6E-19 142.7 12.6 164 163-357 39-223 (296)
440 TIGR02034 CysN sulfate adenyly 99.6 2.4E-14 5.2E-19 156.2 15.0 144 164-346 1-187 (406)
441 cd01854 YjeQ_engC YjeQ/EngC. 99.6 1.7E-14 3.7E-19 150.0 13.1 141 270-434 76-227 (287)
442 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 6.2E-14 1.3E-18 131.1 15.3 158 164-360 23-189 (221)
443 PRK09602 translation-associate 99.6 4.1E-14 8.8E-19 152.7 16.4 162 164-358 2-273 (396)
444 cd01882 BMS1 Bms1. Bms1 is an 99.6 9E-14 2E-18 139.6 17.8 143 370-537 38-184 (225)
445 TIGR03680 eif2g_arch translati 99.6 2.5E-14 5.4E-19 156.2 14.9 156 163-357 4-197 (406)
446 PRK09602 translation-associate 99.6 6.4E-14 1.4E-18 151.2 17.8 89 372-468 2-113 (396)
447 PRK05506 bifunctional sulfate 99.6 2E-14 4.4E-19 165.5 14.9 145 163-346 24-211 (632)
448 TIGR00485 EF-Tu translation el 99.6 6.4E-14 1.4E-18 152.6 17.3 153 163-355 12-200 (394)
449 PTZ00327 eukaryotic translatio 99.6 8E-14 1.7E-18 152.8 17.3 163 369-548 32-232 (460)
450 smart00176 RAN Ran (Ras-relate 99.6 7.7E-14 1.7E-18 137.4 15.5 150 169-357 1-155 (200)
451 PF04548 AIG1: AIG1 family; I 99.6 3.7E-14 8E-19 141.2 13.3 168 165-360 2-190 (212)
452 PF10662 PduV-EutP: Ethanolami 99.6 4.7E-14 1E-18 128.9 12.8 140 372-545 2-142 (143)
453 KOG0462 Elongation factor-type 99.5 3E-14 6.6E-19 151.5 12.9 161 161-361 58-240 (650)
454 KOG0078 GTP-binding protein SE 99.5 1.4E-13 2.9E-18 131.4 16.0 157 162-357 11-175 (207)
455 PRK04000 translation initiatio 99.5 5.5E-14 1.2E-18 153.4 15.3 156 163-357 9-202 (411)
456 COG2229 Predicted GTPase [Gene 99.5 1.1E-13 2.4E-18 129.0 14.9 154 371-545 10-174 (187)
457 PLN03126 Elongation factor Tu; 99.5 7.2E-14 1.6E-18 154.2 16.2 140 163-342 81-248 (478)
458 PRK05124 cysN sulfate adenylyl 99.5 3.2E-14 6.9E-19 157.7 13.4 147 162-347 26-216 (474)
459 TIGR02836 spore_IV_A stage IV 99.5 5.7E-14 1.2E-18 146.8 14.1 172 368-548 14-233 (492)
460 PRK12739 elongation factor G; 99.5 1.1E-13 2.4E-18 160.8 18.1 116 163-318 8-140 (691)
461 TIGR00483 EF-1_alpha translati 99.5 1.1E-13 2.4E-18 152.4 15.8 145 163-346 7-197 (426)
462 COG0481 LepA Membrane GTPase L 99.5 1E-13 2.3E-18 145.1 14.6 159 370-547 8-184 (603)
463 KOG1490 GTP-binding protein CR 99.5 7.9E-14 1.7E-18 146.9 13.7 196 369-574 166-369 (620)
464 PF10662 PduV-EutP: Ethanolami 99.5 1.1E-13 2.3E-18 126.5 12.6 137 164-352 2-142 (143)
465 cd01850 CDC_Septin CDC/Septin. 99.5 2.6E-13 5.7E-18 140.2 16.8 155 371-531 4-184 (276)
466 PTZ00258 GTP-binding protein; 99.5 3.1E-13 6.7E-18 144.3 17.7 91 370-468 20-126 (390)
467 cd04169 RF3 RF3 subfamily. Pe 99.5 3.2E-13 7E-18 138.8 17.2 116 164-319 3-139 (267)
468 KOG1490 GTP-binding protein CR 99.5 1.4E-13 3E-18 145.1 14.5 165 160-355 165-340 (620)
469 cd04129 Rho2 Rho2 subfamily. 99.5 2.9E-13 6.3E-18 132.1 15.8 153 165-357 3-174 (187)
470 COG1100 GTPase SAR1 and relate 99.5 2.3E-13 4.9E-18 136.1 15.2 163 372-549 6-185 (219)
471 cd01853 Toc34_like Toc34-like 99.5 9.4E-13 2E-17 133.6 19.8 129 369-502 29-165 (249)
472 PLN00023 GTP-binding protein; 99.5 9.2E-14 2E-18 143.6 12.3 117 370-501 20-166 (334)
473 cd04103 Centaurin_gamma Centau 99.5 3.5E-13 7.5E-18 127.9 15.4 144 165-354 2-157 (158)
474 PTZ00258 GTP-binding protein; 99.5 2.4E-13 5.2E-18 145.1 15.8 90 162-283 20-126 (390)
475 PRK12740 elongation factor G; 99.5 2.4E-13 5.1E-18 158.2 17.2 109 377-500 1-126 (668)
476 PRK00007 elongation factor G; 99.5 9.3E-14 2E-18 161.3 13.6 139 163-341 10-171 (693)
477 cd01873 RhoBTB RhoBTB subfamil 99.5 2.7E-13 5.9E-18 133.1 14.7 150 164-353 3-193 (195)
478 cd04104 p47_IIGP_like p47 (47- 99.5 2.6E-13 5.6E-18 133.6 14.5 158 164-359 2-187 (197)
479 cd00882 Ras_like_GTPase Ras-li 99.5 2.1E-13 4.5E-18 126.0 13.1 146 168-352 1-156 (157)
480 KOG1707 Predicted Ras related/ 99.5 1.5E-12 3.3E-17 140.0 21.3 155 371-551 425-585 (625)
481 cd04167 Snu114p Snu114p subfam 99.5 3.6E-13 7.8E-18 134.3 15.3 112 165-316 2-136 (213)
482 KOG0075 GTP-binding ADP-ribosy 99.5 1.9E-13 4.1E-18 121.6 11.5 157 372-549 21-182 (186)
483 KOG0098 GTPase Rab2, small G p 99.5 3.2E-13 6.9E-18 125.3 13.4 154 163-355 6-167 (216)
484 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 5.3E-13 1.2E-17 133.3 16.1 151 164-354 2-174 (222)
485 COG1217 TypA Predicted membran 99.5 7.1E-13 1.5E-17 138.6 17.1 146 371-535 5-171 (603)
486 PF00071 Ras: Ras family; Int 99.5 5E-13 1.1E-17 126.8 14.5 152 165-355 1-160 (162)
487 KOG2484 GTPase [General functi 99.5 1.9E-13 4.1E-18 141.0 12.3 162 263-432 137-309 (435)
488 PF00025 Arf: ADP-ribosylation 99.5 3E-13 6.6E-18 130.5 13.1 150 163-354 14-174 (175)
489 KOG0393 Ras-related small GTPa 99.5 1.8E-13 3.8E-18 131.2 11.1 160 371-548 4-178 (198)
490 PRK00741 prfC peptide chain re 99.5 5.9E-13 1.3E-17 148.8 17.1 115 163-317 10-145 (526)
491 TIGR00484 EF-G translation elo 99.5 3E-13 6.4E-18 157.3 15.1 139 163-341 10-171 (689)
492 PTZ00141 elongation factor 1- 99.5 3.3E-13 7.2E-18 148.4 14.6 144 163-346 7-203 (446)
493 cd04170 EF-G_bact Elongation f 99.5 7.6E-13 1.7E-17 136.8 16.3 115 165-319 1-132 (268)
494 PRK09601 GTP-binding protein Y 99.5 9.3E-13 2E-17 139.0 16.4 89 372-468 3-107 (364)
495 KOG2423 Nucleolar GTPase [Gene 99.5 2E-13 4.3E-18 139.7 10.8 156 266-433 207-365 (572)
496 PTZ00099 rab6; Provisional 99.5 7.2E-13 1.6E-17 128.0 13.9 129 402-550 10-143 (176)
497 PTZ00327 eukaryotic translatio 99.5 6E-13 1.3E-17 145.9 15.0 157 163-358 34-235 (460)
498 PTZ00132 GTP-binding nuclear p 99.5 2.3E-12 4.9E-17 128.7 17.9 174 163-389 9-193 (215)
499 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.2E-12 4.9E-17 132.6 17.8 127 369-503 36-170 (313)
500 KOG0394 Ras-related GTPase [Ge 99.5 9.1E-13 2E-17 122.1 13.3 160 161-359 7-181 (210)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.4e-93 Score=743.06 Aligned_cols=439 Identities=50% Similarity=0.799 Sum_probs=403.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
|.|||||+||||||||||+|+|++.++|+++||+|+|+.++.+.|.+.+|.||||+|+..... +
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~-------------- 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--D-------------- 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--h--------------
Confidence 789999999999999999999999999999999999999999999999999999999986321 1
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
.+...|..|+..++..||++|||+|+..|+++.|..++++|++ .++|+++|+||+|.... ....
T Consensus 68 -------------~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~-e~~~ 131 (444)
T COG1160 68 -------------ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKA-EELA 131 (444)
T ss_pred -------------HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchh-hhhH
Confidence 2455678999999999999999999999999999999999996 58999999999998843 4567
Q ss_pred HHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCC
Q 005979 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (666)
Q Consensus 324 ~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~ 402 (666)
.+||++|+ .+++|||.||.|+.+|++.+...++ ..+... .+.....++|+++|+||||||||+|+|+|+++.++++.
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~-~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~ 209 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEE-EEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI 209 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Cccccc-ccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCC
Confidence 88999999 8999999999999999999999986 322111 11113578999999999999999999999999999999
Q ss_pred CcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHH
Q 005979 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (666)
Q Consensus 403 ~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i 482 (666)
+|||||.+...+++ +++.+.++||+|++++.++. +.+|.+++.++..++..||++++|+|+++++++||++++..+
T Consensus 210 aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~---e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i 285 (444)
T COG1160 210 AGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKIT---ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLI 285 (444)
T ss_pred CCccccceeeeEEE-CCeEEEEEECCCCCcccccc---cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHH
Confidence 99999999999985 99999999999999998886 468999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHH
Q 005979 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQ 562 (666)
Q Consensus 483 ~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~ 562 (666)
.+.++++|+|+||||+.+. .....+.+.++++..+.+..++|++++||++|.|+.+||+.+.++++.+..+++|+.||+
T Consensus 286 ~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~ 364 (444)
T COG1160 286 EEAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNR 364 (444)
T ss_pred HHcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHH
Confidence 9999999999999999875 335567788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEecCcccc
Q 005979 563 VVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEM 642 (666)
Q Consensus 563 ~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~~~~ 642 (666)
||+.++..+|||. .+|+++|++|+||+.++||+|++|||.++.++.+|+|||+|+||+.|+|.|+||+|.||.+.+++.
T Consensus 365 ~l~~a~~~~pP~~-~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~~ 443 (444)
T COG1160 365 VLEDAVAKHPPPV-RYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPYA 443 (444)
T ss_pred HHHHHHHhCCCCc-cCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecCCCccC
Confidence 9999999996664 569999999999999999999999999999999999999999999999999999999999998875
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=5.8e-73 Score=627.80 Aligned_cols=431 Identities=40% Similarity=0.678 Sum_probs=367.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+|||+||||||||+|+|++...+.+.+.+|+|++...+...+++..+.+|||||+.... .
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~---~------------- 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA---K------------- 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc---h-------------
Confidence 578999999999999999999998877889999999999999999999999999999986311 1
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
.+...+..++..++..||++|||+|++.+.+..+..+.++++. .++|+++|+||+|+.... ..
T Consensus 102 --------------~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~-~~ 164 (472)
T PRK03003 102 --------------GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGE-AD 164 (472)
T ss_pred --------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccc-hh
Confidence 1223455677788999999999999999999888889999987 589999999999986532 22
Q ss_pred HHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccC
Q 005979 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (666)
Q Consensus 323 ~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~ 401 (666)
..+++.+++ .++++||++|.|+++|++.|.+.+++.... .......++|+++|+||||||||+|+|++..+..+++
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRV---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccc---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 345566777 578999999999999999999888652211 1112346899999999999999999999988778899
Q ss_pred CCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHH
Q 005979 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (666)
Q Consensus 402 ~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~ 481 (666)
.+|||+|.+...+.. ++..+.||||||+.+..... ...+.+...++..+++.||++++|+|++++.+.++..++..
T Consensus 242 ~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~ 317 (472)
T PRK03003 242 VAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSM 317 (472)
T ss_pred CCCccCCcceEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999888875 78889999999997654322 22455666677788999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHH
Q 005979 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (666)
Q Consensus 482 i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln 561 (666)
+.+.++|+|+|+||||+..... ...+...+.+.+....++|++++||++|.||+++|..+.+.++.+..+++|+.||
T Consensus 318 ~~~~~~piIiV~NK~Dl~~~~~---~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln 394 (472)
T PRK03003 318 VIEAGRALVLAFNKWDLVDEDR---RYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLN 394 (472)
T ss_pred HHHcCCCEEEEEECcccCChhH---HHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 9889999999999999975321 2223445556666667799999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEecCc
Q 005979 562 QVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRK 639 (666)
Q Consensus 562 ~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~ 639 (666)
+|+++++..+|||. .+|+++|+||+||+.++||+|++|+| +.++++|+|||+|+||++|+|.|+||+|.||++.+
T Consensus 395 ~~~~~~~~~~~~p~-~~g~~~k~~y~~q~~~~pp~f~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~ 469 (472)
T PRK03003 395 AWLGELVAATPPPV-RGGKQPRILFATQASTRPPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISVRVREK 469 (472)
T ss_pred HHHHHHHHcCCCCC-CCCeeeeEEEEECCCCCCCEEEEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEEEecCc
Confidence 99999999999986 46899999999999999999999976 67999999999999999999999999999997644
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=5.3e-72 Score=616.96 Aligned_cols=428 Identities=52% Similarity=0.831 Sum_probs=377.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|+||||||||+|+|++...+.+++.+|+|+++..+.+.+++..+.+|||||+.... .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~--------------- 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---D--------------- 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---h---------------
Confidence 4899999999999999999999888899999999999999999999999999999985311 1
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHH
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~ 324 (666)
.+...+..++..+++.+|+++||+|+..+++..+..+.+++++ .++|+++|+||+|+..... ...
T Consensus 63 ------------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~-~~~ 127 (429)
T TIGR03594 63 ------------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDA-VAA 127 (429)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccc-cHH
Confidence 1234456778889999999999999999999999999999988 5899999999999876432 345
Q ss_pred HHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC
Q 005979 325 EFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (666)
Q Consensus 325 ~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~ 403 (666)
+++.+|+ .++++||.+|.|+.+|++.+.+.++..... .......++|+++|++|+|||||+|+|++..+..+++.+
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 6778888 799999999999999999999888653321 112234579999999999999999999999888899999
Q ss_pred cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHH
Q 005979 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (666)
Q Consensus 404 gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~ 483 (666)
|||++.+...+.. ++..+.+|||||+.++..+. ...+.+...++..+++.||++|+|+|++++.+.++.+++..+.
T Consensus 205 gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR03594 205 GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVT---EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLIL 280 (429)
T ss_pred CceECcEeEEEEE-CCcEEEEEECCCccccccch---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 9999999888875 77899999999998876553 3567777888899999999999999999999999999999999
Q ss_pred HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHHH
Q 005979 484 QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQV 563 (666)
Q Consensus 484 ~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~ 563 (666)
+.++|+|+|+||||+... ....+.+.+.+...+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+|
T Consensus 281 ~~~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~ 358 (429)
T TIGR03594 281 EAGKALVIVVNKWDLVKD--EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRV 358 (429)
T ss_pred HcCCcEEEEEECcccCCC--HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 999999999999999731 233455666777777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEE
Q 005979 564 VQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWR 635 (666)
Q Consensus 564 l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~ 635 (666)
|.+++..+|||.. +|+++|++|+||+.++||+|++|+|+++.++++|+|||+|+||+.|+|.|+||+|.||
T Consensus 359 l~~~~~~~~~p~~-~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 359 LEEAVAAHPPPLV-NGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred HHHHHHcCCCCCC-CCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 9999999998864 6899999999999999999999999999999999999999999999999999999995
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=9.8e-71 Score=607.57 Aligned_cols=430 Identities=52% Similarity=0.833 Sum_probs=375.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|+++|++|||||||+|+|++...+.+.+.+++|++...+.+.+++..+.+|||||+..... .
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~------------- 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---G------------- 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---h-------------
Confidence 689999999999999999999998788899999999999999999999999999999975111 1
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
+...+..++..++..+|++|||+|+..+++..+..+.+++++ .++|+++|+||+|+.... ...
T Consensus 66 --------------~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~-~~~ 128 (435)
T PRK00093 66 --------------FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEE-ADA 128 (435)
T ss_pred --------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccch-hhH
Confidence 223355677788999999999999999999999999999988 489999999999976532 334
Q ss_pred HHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCC
Q 005979 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (666)
Q Consensus 324 ~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~ 402 (666)
.+++.+|+ .++++||.+|.|+.+|++.|......... .......++|+++|++|+|||||+|+|++..+..+++.
T Consensus 129 ~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~ 204 (435)
T PRK00093 129 YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDI 204 (435)
T ss_pred HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCC
Confidence 56777888 58999999999999999999874433111 11123468999999999999999999999998999999
Q ss_pred CcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHH
Q 005979 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (666)
Q Consensus 403 ~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i 482 (666)
+|+|++.+...+.. ++..+.+|||||+.+...+. ..++.+...++.++++.+|++|+|+|++++.+.++..++..+
T Consensus 205 ~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~ 280 (435)
T PRK00093 205 AGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLA 280 (435)
T ss_pred CCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999888774 78899999999998766553 356777888899999999999999999999999999999999
Q ss_pred HHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHH
Q 005979 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQ 562 (666)
Q Consensus 483 ~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~ 562 (666)
.+.++|+|+|+||||+.+. .....+.+.+...+....++|++++||++|.|++++++.+.+.+..+.++++|+.||+
T Consensus 281 ~~~~~~~ivv~NK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (435)
T PRK00093 281 LEAGRALVIVVNKWDLVDE---KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNR 357 (435)
T ss_pred HHcCCcEEEEEECccCCCH---HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHH
Confidence 9999999999999999743 2234556667777777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEecC
Q 005979 563 VVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRR 638 (666)
Q Consensus 563 ~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~ 638 (666)
||++++..+|||. .+|+++|++|+||+.++||+|++|+|+++.++++|+|||+|+||++|+|.|+||+|.||+++
T Consensus 358 ~l~~~~~~~~~p~-~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~~~ 432 (435)
T PRK00093 358 VLEEAVERHPPPL-VKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFREKK 432 (435)
T ss_pred HHHHHHHcCCCCC-CCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEecCC
Confidence 9999999998886 46899999999999999999999999999999999999999999999999999999998644
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=3.8e-69 Score=623.37 Aligned_cols=435 Identities=38% Similarity=0.621 Sum_probs=369.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..++|+|+|+||||||||+|+|++.+.+++++.+|+|+++..+...+++..+.+|||||+.....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--------------- 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--------------- 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---------------
Confidence 35789999999999999999999998888999999999999999999999999999999864111
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
.+...+..++..++..+|++|||+|++.+++..+..+.++|+. .++|+++|+||+|+.... .
T Consensus 339 ---------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~-~ 400 (712)
T PRK09518 339 ---------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASE-Y 400 (712)
T ss_pred ---------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccch-h
Confidence 1223456777888999999999999999999999999999987 589999999999986542 2
Q ss_pred hHHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCccccc
Q 005979 322 QVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVS 400 (666)
Q Consensus 322 ~~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~ 400 (666)
...+++.+|+ .++++||+||.|+.+|++.|.+.++........ ......++|+++|+||||||||+|+|++..+..++
T Consensus 401 ~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a-~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~ 479 (712)
T PRK09518 401 DAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGF-LTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVN 479 (712)
T ss_pred hHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccc-cCCCCCcEEEEECCCCCCHHHHHHHHhCccccccC
Confidence 3355667777 578999999999999999999888653211000 01234589999999999999999999999877889
Q ss_pred CCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHH
Q 005979 401 PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAE 480 (666)
Q Consensus 401 ~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~ 480 (666)
+.+|||++.+...+.. ++..+.||||||+.+..... ...+.+...++..+++.+|++++|+|++++.+.++..++.
T Consensus 480 ~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~ 555 (712)
T PRK09518 480 DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMS 555 (712)
T ss_pred CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHH
Confidence 9999999999887775 78889999999987643321 1235555667788899999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhH
Q 005979 481 RIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATI 560 (666)
Q Consensus 481 ~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~l 560 (666)
.+.+.++|+|+|+||||+.+... .+.+.+.+...+....+.+++++||++|.|+++|++.+.+.+.++.++++|+.|
T Consensus 556 ~~~~~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~L 632 (712)
T PRK09518 556 MAVDAGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKL 632 (712)
T ss_pred HHHHcCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHH
Confidence 88889999999999999975322 233444555566667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEecCcc
Q 005979 561 NQVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKM 640 (666)
Q Consensus 561 n~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~~ 640 (666)
|+++++++..+|||. .+|+++|++|+||+.++||+|++|+| +.++++|+|||+|+||++|+|.|+||+|.||++.+.
T Consensus 633 n~~l~~~~~~~~~p~-~~g~~~ki~y~~q~~~~Pp~f~~f~~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~~~~~ 709 (712)
T PRK09518 633 NAFLGKIQAEHPHPL-RGGKQPRILFATQASTRPPRFVIFTT--GFLEHGYRRFLERSLREEFGFEGSPIQISVNIREKK 709 (712)
T ss_pred HHHHHHHHhhCCCCc-cCCeeeeEEEEECCCCCCCEEEEEcC--CCCChHHHHHHHHHHHHHcCCccceEEEEEEecccc
Confidence 999999999999886 57899999999999999999999987 679999999999999999999999999999977543
No 6
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-36 Score=317.94 Aligned_cols=418 Identities=33% Similarity=0.358 Sum_probs=294.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
+++.+.|++|+||++|.|. ...+.+.+.+|+|+|...+...++...|+..||.|+.-+....- .......|...+.
T Consensus 76 ~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~av-v~~~l~a~~~sg~ 151 (531)
T KOG1191|consen 76 RSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAV-VVGVLTALGASGI 151 (531)
T ss_pred cccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCccc-hhhHHHHhhhccC
Confidence 4577899999999999998 23356778899999999998889999999999999976544322 1222222233568
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
||+.+....++..++..+.......+-...|+|.++.++...-...+.+...+.... ...+.++-++++-...-...+.
T Consensus 152 ~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~-~~r~~lIe~~a~l~a~idf~e~ 230 (531)
T KOG1191|consen 152 PGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCF-GWRKILIEALAGLEARIDFEEE 230 (531)
T ss_pred CCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhh-hHHHHHHHHHhccceeechhhc
Confidence 898888888888888777777777776778888888886543222221111111110 1122333333332111111122
Q ss_pred HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC
Q 005979 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (666)
Q Consensus 324 ~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~ 403 (666)
..+...+...+++ +..+|++.+...+...+..+ .-...++|+++|+||||||||+|+|..+++.+|++.+
T Consensus 231 ~~l~~~~t~~~~~------~~~~l~d~v~s~l~~~~~~e----~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~ 300 (531)
T KOG1191|consen 231 RPLEEIETVEIFI------ESLSLLDDVLSHLNKADEIE----RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP 300 (531)
T ss_pred Cchhhccchhhhh------HHHHHHHHHHHHHHhhhhHH----HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC
Confidence 2222333333333 33347777777776554321 2233589999999999999999999999999999999
Q ss_pred cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHH
Q 005979 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (666)
Q Consensus 404 gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~ 483 (666)
|||||.++..+.. +|.++.|+||+|++.. .++.+|...+.++.+.++.||++++|+|+....+.++..+.+.+.
T Consensus 301 GTTRDaiea~v~~-~G~~v~L~DTAGiRe~-----~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~ 374 (531)
T KOG1191|consen 301 GTTRDAIEAQVTV-NGVPVRLSDTAGIREE-----SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILE 374 (531)
T ss_pred CcchhhheeEeec-CCeEEEEEeccccccc-----cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHH
Confidence 9999999999995 9999999999999872 346789999999999999999999999998888899988888777
Q ss_pred Hh------------CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc--CCCCC-EEEEeCccCCCHHHHHHHHHHHH
Q 005979 484 QE------------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LDWAP-IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 484 ~~------------~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~--~~~~~-ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
.. ..|++++.||.|+..+-.... .....+... ....+ +.++|+++++|+..|..++
T Consensus 375 ~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~-----~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~al---- 445 (531)
T KOG1191|consen 375 TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT-----KIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTAL---- 445 (531)
T ss_pred HhccceEEEeccccccceEEEechhhccCcccccc-----CCceeccccccCcccceEEEeeechhhhHHHHHHHH----
Confidence 64 267888999999876411110 000001111 11233 4559999999998887766
Q ss_pred HhcccCCCchhHHHHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCc
Q 005979 549 KERSRRLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGT 628 (666)
Q Consensus 549 ~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~ 628 (666)
+|+|.+.....+.+|++..+++.+.+|.++... ..|.+|+.+++++.++|-|+
T Consensus 446 -----------l~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~----------------~l~~~~~~k~~~~D~~la~~ 498 (531)
T KOG1191|consen 446 -----------LNIVERLVVSPHSAPPTLSQKRIKELLRTCAAP----------------ELERRFLAKQLKEDIDLAGE 498 (531)
T ss_pred -----------HHHHHHhhcCCCCCchhhcchhHHHHHHhhhhh----------------hHHHHHHhhhcccchhhccc
Confidence 678888888766666655677777777666543 88999999999999999999
Q ss_pred cEEEEEEecC
Q 005979 629 PIRLLWRSRR 638 (666)
Q Consensus 629 pi~~~~~~~~ 638 (666)
|+|+.++...
T Consensus 499 ~lR~a~~~i~ 508 (531)
T KOG1191|consen 499 PLRLAQRSIA 508 (531)
T ss_pred hHHHHHhhhc
Confidence 9999886543
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=254.33 Aligned_cols=247 Identities=30% Similarity=0.435 Sum_probs=190.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
+.|+++|+||||||||+|+|+++..++|+++||+|||.++....+ .+..+.++||+|+..... +.++..+..++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~-----~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDE-----DELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCc-----hHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999885 788899999999975321 35778888999
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..++..||++|||+|+..|++.+|..++++++..++|+|+|+||+|-...+ .....+..++.-.++++||
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e----------~~~~efyslG~g~~~~ISA 147 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE----------ELAYEFYSLGFGEPVPISA 147 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh----------hhHHHHHhcCCCCceEeeh
Confidence 999999999999999999999999999999998889999999999975321 1123445566778999999
Q ss_pred ccCCCHHHHHHHHHHHHH--hc----c----cCC---------CchhHHHHHHHHHHccCC-CCC----------CCCc-
Q 005979 532 IAGQSVDKIIVAAEMVDK--ER----S----RRL---------STATINQVVQEAVAFKSP-PRT----------RGGR- 580 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~--~~----~----~~i---------~t~~ln~~l~~~~~~~~~-p~~----------~~~k- 580 (666)
.+|.|+++|++.+.+.+. +. . .++ .++.+|.++.+......+ |.+ +.|+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~ 227 (444)
T COG1160 148 EHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK 227 (444)
T ss_pred hhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE
Confidence 999999999999998851 11 1 111 267899998887665543 211 1121
Q ss_pred -----------ceeE-----EEeeec----------------CcCCC----------------eEEEEEcCCCCCcH--H
Q 005979 581 -----------RGRV-----YYCTQA----------------AVRPP----------------TFVFFVNDAKLFPE--T 610 (666)
Q Consensus 581 -----------~~ki-----~y~~q~----------------~~~pp----------------~fv~~~n~~~~~~~--~ 610 (666)
+.|+ +|+... .+.|. ..||-+|+|+.+.+ .
T Consensus 228 ~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhh
Confidence 1111 222110 11111 45556899999987 7
Q ss_pred HHHHHHHHHHhhcC-CCCccEEEEE
Q 005979 611 YRRYMEKQLRADAG-FSGTPIRLLW 634 (666)
Q Consensus 611 y~~~l~~~~r~~~~-~~g~pi~~~~ 634 (666)
++..++..|+..|+ +.+.|+.++=
T Consensus 308 ~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 308 TMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEE
Confidence 78889999999998 5688876654
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.8e-25 Score=208.45 Aligned_cols=156 Identities=28% Similarity=0.420 Sum_probs=119.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.||||||||+|+|+|.. ..++++||+|++...+.+.+ ++..+.++||||+...... ..++ .+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~-----s~ee-~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSK-----SEEE-RVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSS-----SHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCC-----CcHH-HHHHH
Confidence 489999999999999999999987 78999999999999988886 7789999999998765432 1222 23233
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
......+|++++|+|+++. ++++.+..++.+.++|+|+|+||+|+......... .+.+.+. .++|++++||
T Consensus 73 ~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id---~~~Ls~~----Lg~pvi~~sa 143 (156)
T PF02421_consen 73 YLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEID---AEKLSER----LGVPVIPVSA 143 (156)
T ss_dssp HHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE----HHHHHHH----HTS-EEEEBT
T ss_pred HHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEEC---HHHHHHH----hCCCEEEEEe
Confidence 3335789999999999874 77888999999999999999999998754332221 1222233 3689999999
Q ss_pred ccCCCHHHHHHHH
Q 005979 532 IAGQSVDKIIVAA 544 (666)
Q Consensus 532 k~g~gv~~L~~~i 544 (666)
++|.|+++|+++|
T Consensus 144 ~~~~g~~~L~~~I 156 (156)
T PF02421_consen 144 RTGEGIDELKDAI 156 (156)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHhhC
Confidence 9999999999875
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=8.7e-25 Score=218.47 Aligned_cols=173 Identities=31% Similarity=0.383 Sum_probs=147.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
-.|+++|+||||||||+|+|+|+..+++++.+.|||..+.+.+.. +..++.++||||+.+.. ..+..+++..+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk------~~l~~~m~~~a 79 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK------HALGELMNKAA 79 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc------hHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998885 67899999999998753 35688889999
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..++..+|+++||+|+.+++...|..++..+.+.+.|+|+++||+|...+... .....+ ..-....+..++++||
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l~~~~~---~~~~~~~f~~ivpiSA 154 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--LLKLIA---FLKKLLPFKEIVPISA 154 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--HHHHHH---HHHhhCCcceEEEeec
Confidence 99999999999999999999999999999999878999999999999876431 111222 2222344568999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcccCCC
Q 005979 532 IAGQSVDKIIVAAEMVDKERSRRLS 556 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~~~~~i~ 556 (666)
++|.|++.|.+.+...+.+.....|
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCC
Confidence 9999999999999999887766665
No 10
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.92 E-value=2.5e-24 Score=227.22 Aligned_cols=163 Identities=34% Similarity=0.524 Sum_probs=141.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++++++|+||||||||+|+|+++++.+|+++||||||.++..+.. +|..+.|+||+|++.. .+.+|...+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet------~d~VE~iGIe 288 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRET------DDVVERIGIE 288 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccC------ccHHHHHHHH
Confidence 35899999999999999999999999999999999999999999986 9999999999999864 3677999999
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++...+..||.+|+|+|++.+.+.++..++. ....++|+++|.||.||..+..... +.-....+++.+
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-----------~~~~~~~~~i~i 356 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELES-----------EKLANGDAIISI 356 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccch-----------hhccCCCceEEE
Confidence 9999999999999999999988888888887 5566899999999999987543211 111234579999
Q ss_pred eCccCCCHHHHHHHHHHHHHhc
Q 005979 530 TAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~~~ 551 (666)
||++|.|++.|.++|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999887654
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=215.35 Aligned_cols=164 Identities=34% Similarity=0.532 Sum_probs=141.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
..|||+|+||||||||+|+|+|.+.+++++.+.+|+....+....+..++.++||||+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----------------- 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----------------- 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch-----------------
Confidence 469999999999999999999999999999999999999999999999999999999976321
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--h
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M 321 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~ 321 (666)
.+-..|.+.+..++..+|+|+||+|+.+++...|..+++.|+. .+.|+++++||+|...... .
T Consensus 70 -------------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 70 -------------ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred -------------HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHH
Confidence 1234577889999999999999999999999999999999987 5789999999999887654 2
Q ss_pred hHHHHHh--cCC-CCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 322 QVSEFWS--LGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 322 ~~~~~~~--~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
...+++. ..| .++++||++|.|++.|++.+..++++..
T Consensus 135 ~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 135 KLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 3333333 344 6899999999999999999999998643
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=1.6e-23 Score=195.33 Aligned_cols=150 Identities=31% Similarity=0.466 Sum_probs=113.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.||||||||||+|+|.+ ..++++||+|.+...+.+.+++..+.++||||+.+......+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-------------- 66 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-------------- 66 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--------------
Confidence 69999999999999999999998 789999999999999999999999999999999875433211
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-
Q 005979 245 GIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~- 321 (666)
++.+..++ ...|++++|+|+++ ...+..+...+.+ .++|+++|+||+|...+...
T Consensus 67 ------------------e~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 67 ------------------ERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp ------------------HHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEE
T ss_pred ------------------HHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCE
Confidence 12223333 57999999999975 2344456666666 58999999999997654221
Q ss_pred -hHHH-HHhcCCCCeeecccCCCChHHHHHHH
Q 005979 322 -QVSE-FWSLGFSPLPISAISGTGTGELLDLV 351 (666)
Q Consensus 322 -~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I 351 (666)
.... ...+|.+++++||.+|.|+++|++.|
T Consensus 125 id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 1112 23468899999999999999999875
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=7e-23 Score=211.68 Aligned_cols=170 Identities=25% Similarity=0.322 Sum_probs=131.2
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|+||||||||+|+|++.....+++.++||++.+...... ++.++.+|||||+.... ..+...+...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~------~~l~~~~~~~~~ 74 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKK------HSLNRLMMKEAR 74 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCc------chHHHHHHHHHH
Confidence 68999999999999999999998888999999999987766553 56689999999986531 123444556677
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCc
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk 532 (666)
.+++.+|++++|+|+++..+.+ ..++..+...++|+++|+||+|+..... . ...+........+.+++++||+
T Consensus 75 ~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~--~----~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 75 SAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDK--L----LPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHH--H----HHHHHHHHhhcCCCceEEEecC
Confidence 8899999999999999876554 5677778888999999999999964211 1 1122222222334589999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCC
Q 005979 533 AGQSVDKIIVAAEMVDKERSRRLS 556 (666)
Q Consensus 533 ~g~gv~~L~~~i~~~~~~~~~~i~ 556 (666)
+|.|+++|++.|.+.+...+...+
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPFRYP 171 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999988766554443
No 14
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=99.90 E-value=6.1e-24 Score=175.00 Aligned_cols=80 Identities=53% Similarity=1.027 Sum_probs=64.1
Q ss_pred CCCchhHHHHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEE
Q 005979 554 RLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLL 633 (666)
Q Consensus 554 ~i~t~~ln~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~ 633 (666)
|++|+.||+||++++..+||| . +|+++|++|+||+.++||+|++|||+++.++++|+|||+|+||++|||.|+||+|.
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp-~-~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~ 78 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPP-S-KGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLI 78 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--S-E-TTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEE
T ss_pred CCCHHHHHHHHHHHHHhCCCC-C-CCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEE
Confidence 689999999999999999998 4 68999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 005979 634 WR 635 (666)
Q Consensus 634 ~~ 635 (666)
||
T Consensus 79 ~R 80 (80)
T PF14714_consen 79 FR 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 96
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2e-22 Score=212.92 Aligned_cols=162 Identities=33% Similarity=0.446 Sum_probs=135.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+|+|+||||||||+|+|++++.++|.+.||+|||.....+.++|.++.|+||.|+-.+ .+..+.++.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet----~d~VE~iGI----- 287 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET----DDVVERIGI----- 287 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC----ccHHHHHHH-----
Confidence 46899999999999999999999999999999999999999999999999999999999642 234444433
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
+.++..++.||+||||+|++.+++..+..++..+. .++|+++|+||+|+.......
T Consensus 288 ---------------------eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 288 ---------------------ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred ---------------------HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhcccccccc
Confidence 66778899999999999999988888888888333 489999999999998764322
Q ss_pred HHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 323 ~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. ....+.+.+.+||++|.|++.|.+.|.+.+...
T Consensus 344 ~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 344 SE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 21 223445789999999999999999998877643
No 16
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=3.2e-22 Score=191.40 Aligned_cols=172 Identities=53% Similarity=0.802 Sum_probs=138.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|+|||||+|+|++.......+.+++|++.....+.. ++..+.+|||||+.+..... ..++.+...+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~---~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVE---EGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchh---ccHHHHHHHH
Confidence 4789999999999999999999887677788899999988777764 67789999999987653221 2345555566
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
+..+++.+|++++|+|+.++.+.++..++..+...++|+++|+||+|+..... ...+.+.+.+.+.+....+.+++++|
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCCceEEEe
Confidence 77788999999999999999888888888888888999999999999976431 22334445555666555568999999
Q ss_pred CccCCCHHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~ 547 (666)
|++|.|++++++.+.++
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 17
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=5.5e-22 Score=230.51 Aligned_cols=164 Identities=28% Similarity=0.414 Sum_probs=132.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|+||||||||+|+|++.....+++.+|+|++.+...... ++..+.+|||||+.... ..+......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~------~~~~~~~~~ 346 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV------EGIDSAIAS 346 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC------ccHHHHHHH
Confidence 35789999999999999999999987778999999999998877764 78899999999986421 124555567
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++..+++.||++|+|+|++++++..+..+++.++..++|+|+|+||+|+..... . ..+. ...+...+++|
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~-------~~~~-~~lg~~~~~~i 416 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--D-------AAEF-WKLGLGEPYPI 416 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--h-------HHHH-HHcCCCCeEEE
Confidence 778899999999999999999999999999999999999999999999854211 1 1111 11223346899
Q ss_pred eCccCCCHHHHHHHHHHHHHh
Q 005979 530 TAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~~ 550 (666)
||++|.||++|++.|.+.+..
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECCCCCCchHHHHHHHHhccc
Confidence 999999999999999877643
No 18
>COG2262 HflX GTPases [General function prediction only]
Probab=99.89 E-value=2.9e-22 Score=207.91 Aligned_cols=202 Identities=24% Similarity=0.271 Sum_probs=162.4
Q ss_pred HHHHHhhHhhhcccchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeE
Q 005979 124 YSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMY 203 (666)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~ 203 (666)
+.-+.++|+.+.++..++++++..++.+...+..+.+...|.|+++|++|+|||||+|+|++.. ..+.+..+.|.+...
T Consensus 153 ~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdptt 231 (411)
T COG2262 153 TQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTT 231 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCce
Confidence 3344567888899999999999999999888888888999999999999999999999999887 667889999999999
Q ss_pred EEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecC
Q 005979 204 GRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (666)
Q Consensus 204 ~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~ 282 (666)
..+.+. |..++|-||-||.. ..++.+.+.| +.++..+..+|++|+|+|+
T Consensus 232 R~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AF----------------------------ksTLEE~~~aDlllhVVDa 281 (411)
T COG2262 232 RRIELGDGRKVLLTDTVGFIR--DLPHPLVEAF----------------------------KSTLEEVKEADLLLHVVDA 281 (411)
T ss_pred eEEEeCCCceEEEecCccCcc--cCChHHHHHH----------------------------HHHHHHhhcCCEEEEEeec
Confidence 999887 68999999999987 6666665554 5677888999999999999
Q ss_pred CCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccchhhHHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 283 QAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 283 ~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+++...... ...+.|.+. ...+|+|+|+||+|+..... .......+. .++++||.+|.|++.|.+.|.+.++..
T Consensus 282 Sdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 282 SDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 988444433 334455542 24689999999999876543 111222222 589999999999999999999888743
No 19
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1e-21 Score=208.78 Aligned_cols=172 Identities=24% Similarity=0.360 Sum_probs=135.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+..+|+++|+||||||||+|+|++.....+++.++||++.+...+.. ++.++.+|||||+.+.. ..+...+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~------~~l~~~~~r 123 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK------GSLEKAMVR 123 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc------ccHHHHHHH
Confidence 35699999999999999999999988778889999999988777764 77899999999986431 123445566
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC-CCCCEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAPIVY 528 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~-~~~~ii~ 528 (666)
.+..+++.||++|+|+|+.+++...+..++..+...+.|+|+|+||+|+... . .. .+.+.+... .+.++++
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~---~~----~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y---LN----DIKAFLTENHPDSLLFP 195 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c---HH----HHHHHHHhcCCCcEEEE
Confidence 6777899999999999999888888777888888888899999999998642 1 11 222233222 2467999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhcccCCC
Q 005979 529 STAIAGQSVDKIIVAAEMVDKERSRRLS 556 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~~~~i~ 556 (666)
+||++|.|+++|+++|.+.+...+...+
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999988766544443
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=7.3e-22 Score=210.12 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=137.3
Q ss_pred HhhhcccchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-c
Q 005979 131 QLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-G 209 (666)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~ 209 (666)
+..+.++..++.+++...+.+...+..+.....++|+++|+||||||||+|+|++.. +.+.+.+++|.+.....+.+ +
T Consensus 157 ~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~ 235 (351)
T TIGR03156 157 RLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPD 235 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCC
Confidence 344555555666666665555555555555667899999999999999999999987 67888999999999988888 6
Q ss_pred CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH
Q 005979 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (666)
Q Consensus 210 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~ 289 (666)
+..+.+|||||+.. ..++.+.+. + +.+...+..||++|+|+|++++....
T Consensus 236 ~~~i~l~DT~G~~~--~l~~~lie~---------------------------f-~~tle~~~~ADlil~VvD~s~~~~~~ 285 (351)
T TIGR03156 236 GGEVLLTDTVGFIR--DLPHELVAA---------------------------F-RATLEEVREADLLLHVVDASDPDREE 285 (351)
T ss_pred CceEEEEecCcccc--cCCHHHHHH---------------------------H-HHHHHHHHhCCEEEEEEECCCCchHH
Confidence 78999999999953 222222221 2 33456789999999999998876554
Q ss_pred HH-HHHHHHHhhc-CCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 290 DE-EIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 290 d~-~i~~~l~~~~-~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
+. .+.+++.... .++|+++|+||+|+...... ........+++++||++|.|+++|++.|.+.
T Consensus 286 ~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v--~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 286 QIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI--ERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH--HHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 43 2334454421 37899999999998753221 1111222357999999999999999998754
No 21
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.1e-22 Score=185.62 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=122.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+||+++|..|||||||+-++.... +.....+++...+....+...+ ..++.+|||+|++++.++.++
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM---------- 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM---------- 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc----------
Confidence 4799999999999999999999554 4443455555555655555422 347889999999999887654
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHhCCc---EEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQEGKG---CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~~~p---vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
|+|+|+++|+|||+++.-+++..+ |++.+++..-| +.||+||+||...+.....+ .+.++...+..
T Consensus 74 ----YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~e------a~~yAe~~gll 143 (200)
T KOG0092|consen 74 ----YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEE------AQAYAESQGLL 143 (200)
T ss_pred ----eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHH------HHHHHHhcCCE
Confidence 899999999999999987776655 88888876444 45699999998765544322 34556667899
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++|||+|.||+++|..|.+.+.
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhcc
Confidence 999999999999999999986544
No 22
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.5e-22 Score=186.06 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=129.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..+||+++|.+|||||.|+-+|.+. .+.-+...++..|.....+++ +|. ++++|||+|+.||+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~-~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrti---------- 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDD-TFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTI---------- 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccC-CcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhh----------
Confidence 45689999999999999999999865 466677777888888888876 555 7999999999887653
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
+..|+|+||++|+|||+++..++.... |+.++.++ ++|.++|+||+|+.+.+.... +..+.++...
T Consensus 75 ----t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~------~~a~~fa~~~ 144 (205)
T KOG0084|consen 75 ----TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST------EEAQEFADEL 144 (205)
T ss_pred ----hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH------HHHHHHHHhc
Confidence 456999999999999999988877765 66777775 679999999999977554432 2235566666
Q ss_pred CCC-EEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAP-IVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~-ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+.| ++++|||.+.||++.|..++..+..
T Consensus 145 ~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 145 GIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred CCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 777 9999999999999999999876554
No 23
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.5e-22 Score=216.97 Aligned_cols=208 Identities=25% Similarity=0.258 Sum_probs=154.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEe------------------ecCeeEEEEecCCcc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF------------------WGEHEFMLVDTGGVL 222 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~i~liDTpG~~ 222 (666)
.+.|.|||+||.++|||.|++.|.+.+ ++-+...|+|.......+. +.-..+++|||||++
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccc-cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 356899999999999999999999987 6778888888776433221 223468999999999
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC
Q 005979 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (666)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~ 302 (666)
++.+++. +....||++|+|+|++||+.++..+.+++|+. .
T Consensus 552 sFtnlRs--------------------------------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~--r 591 (1064)
T KOG1144|consen 552 SFTNLRS--------------------------------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRM--R 591 (1064)
T ss_pred hhhhhhh--------------------------------------ccccccceEEEEeehhccCCcchhHHHHHHHh--c
Confidence 8766543 55688999999999999999999999999998 6
Q ss_pred CCcEEEEeccCCCCccc-------h------------hh--------HHHHHhcC---------------CCCeeecccC
Q 005979 303 DKFIILAVNKCESPRKG-------I------------MQ--------VSEFWSLG---------------FSPLPISAIS 340 (666)
Q Consensus 303 ~~p~ilv~NK~D~~~~~-------~------------~~--------~~~~~~~~---------------~~~i~iSa~~ 340 (666)
+.|||+++||+|++... + .. ..+|...| ++++|+||.+
T Consensus 592 ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 592 KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 99999999999987410 0 00 11222222 2679999999
Q ss_pred CCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc
Q 005979 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 341 g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
|.|+.+|+.+|+++.+..+... ++.+ ..+-.+++ ...+-+..|||+|.+...-.+..|.
T Consensus 672 GeGipdLl~llv~ltQk~m~~k-----------l~y~-------~ev~cTVl---EVKvieG~GtTIDViLvNG~L~eGD 730 (1064)
T KOG1144|consen 672 GEGIPDLLLLLVQLTQKTMVEK-----------LAYV-------DEVQCTVL---EVKVIEGHGTTIDVILVNGELHEGD 730 (1064)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH-----------Hhhh-------hheeeEEE---EEEeecCCCceEEEEEEcceeccCC
Confidence 9999999999999988665321 1111 01111111 2345667799999999888878899
Q ss_pred eEEEEEcCCC
Q 005979 421 KFRLIDTAGI 430 (666)
Q Consensus 421 ~~~liDTpG~ 430 (666)
++.++-.-|-
T Consensus 731 ~IvvcG~~Gp 740 (1064)
T KOG1144|consen 731 QIVVCGLQGP 740 (1064)
T ss_pred EEEEcCCCCc
Confidence 9988777663
No 24
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.7e-22 Score=182.83 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=125.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|..+|||||||++++.. .+.....+++..|+....+.+ .|+ +++||||+|+++|+.+.+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd-~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslip---------- 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYD-KFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIP---------- 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHh-hhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhh----------
Confidence 369999999999999999999944 466777888899998888876 444 899999999999987654
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHhC----CcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG----KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~~----~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.|+|++.++|+|||.++.-+.++ .+|++.+...+ .-++||+||.||.++++....+ .+..+...+
T Consensus 90 ----sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE------g~~kAkel~ 159 (221)
T KOG0094|consen 90 ----SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE------GERKAKELN 159 (221)
T ss_pred ----hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH------HHHHHHHhC
Confidence 38999999999999999877655 45887777642 4577999999999876554433 223333345
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+-++++||+.|.||.+||..|+..+..
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhccC
Confidence 689999999999999999998876543
No 25
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=4.9e-21 Score=181.92 Aligned_cols=157 Identities=25% Similarity=0.305 Sum_probs=113.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCc--ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.|+++|++|||||||+|+|++... +.....+++|.+.....+...++..+.+|||||+.++ ...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~--------------~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF--------------IKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH--------------HHH
Confidence 589999999999999999997532 2223346788877666665433779999999998543 123
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC-cEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC--CCCCEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIV 527 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~-pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~--~~~~ii 527 (666)
+..+++.+|++++|+|++++...+....+..+...+. |+++|+||+|+.... ........+.+.+... ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED---WLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH---HHHHHHHHHHHHHHhcCcCCCcEE
Confidence 4457889999999999988665666665555555565 999999999996532 1112233344444432 457899
Q ss_pred EEeCccCCCHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~ 546 (666)
++||++|.|++++++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998853
No 26
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=3.7e-21 Score=211.69 Aligned_cols=158 Identities=38% Similarity=0.558 Sum_probs=129.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++.....+++.+|+|+|.....+.. +|..+.+|||||+.++. ..++.....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~------~~ie~~gi~ 286 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD------DEVEKIGIE 286 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc------cHHHHHHHH
Confidence 35799999999999999999999988778899999999999888875 78899999999987532 234555566
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++..+++.+|++++|+|++++.+.++..++.. ..++|+++|+||+|+.+..... .....+++++
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~i 350 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRI 350 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh--------------hccCCceEEE
Confidence 78889999999999999999888777766654 4579999999999996532110 1234679999
Q ss_pred eCccCCCHHHHHHHHHHHHHh
Q 005979 530 TAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~~ 550 (666)
||++|.|+++|++.|.+....
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999877643
No 27
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=6e-21 Score=203.13 Aligned_cols=159 Identities=25% Similarity=0.384 Sum_probs=119.9
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
...++|+++|.||||||||+|+|++.. ..+.+.+++|+|+....+...++..+.||||||+.+..+ ....+. .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~----~~lie~--f 259 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLP----HELVAA--F 259 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCC----HHHHHH--H
Confidence 355899999999999999999999876 678889999999998888776778999999999844211 011222 3
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+...++.||++|+|+|++++.+.++.. +...+.+ .++|+++|+||+|+.+... .. .. .. ...
T Consensus 260 ~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~------v~-~~---~~--~~~ 327 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR------IE-RL---EE--GYP 327 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh------HH-HH---Hh--CCC
Confidence 55677899999999999999877665543 2233333 3789999999999965311 11 11 11 134
Q ss_pred CEEEEeCccCCCHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++||++|.|+++|++.|.+
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHh
Confidence 6899999999999999998864
No 28
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.1e-21 Score=181.81 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=130.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..+||+++|++|||||+++-+|.. +.+..+.......|.....+.. +|. .+++|||+|+.++..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d-~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti---------- 77 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSD-DSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTI---------- 77 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhh-ccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHH----------
Confidence 4568999999999999999999984 4566777777888888888876 554 7899999999887543
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
+..|+++|+++++|||+++..+.++.. |++.+.++ +.|.+||+||+|+...+... .+-.+.++...
T Consensus 78 ----~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~------~e~ge~lA~e~ 147 (207)
T KOG0078|consen 78 ----TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS------KERGEALAREY 147 (207)
T ss_pred ----HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccccc------HHHHHHHHHHh
Confidence 456899999999999999877766654 77888775 68999999999997754432 23356667667
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++++|||+|.||++.|..+++....
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999876554
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.3e-21 Score=211.53 Aligned_cols=164 Identities=28% Similarity=0.441 Sum_probs=130.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++.....+.+.+|+|++.+...+.. ++..+.||||||+.... ..+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~------~~~~~~~~~ 109 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA------KGLQASVAE 109 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc------hhHHHHHHH
Confidence 35799999999999999999999887778899999999998888774 78899999999986321 123334455
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++..+++.||++|+|+|++++.+..+..++.++...++|+|+|+||+|+..... .. .+.+ ..+.-.+++|
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-~~--------~~~~-~~g~~~~~~i 179 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-DA--------AALW-SLGLGEPHPV 179 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-hh--------HHHH-hcCCCCeEEE
Confidence 677789999999999999999998888899999989999999999999854211 10 1111 1222245799
Q ss_pred eCccCCCHHHHHHHHHHHHHh
Q 005979 530 TAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~~ 550 (666)
||++|.|+++|++.|.+.+..
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999876543
No 30
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=5.8e-21 Score=197.37 Aligned_cols=161 Identities=29% Similarity=0.425 Sum_probs=125.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|+||||||||+|+|+|.+.+.+++.+++|++...+....++.++.++||||+..... .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~-------------- 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---S-------------- 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---h--------------
Confidence 68999999999999999999999888999999999988776666778899999999975211 1
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh--
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-- 322 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-- 322 (666)
+...+.+.+..++..+|+++||+|++.+.... ..+.+.+.. .+.|+++|+||+|+.......
T Consensus 65 -------------l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~ 128 (270)
T TIGR00436 65 -------------LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPL 128 (270)
T ss_pred -------------HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHH
Confidence 12234456778889999999999998765544 556666765 478999999999987432211
Q ss_pred HHHHHh-cCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 323 VSEFWS-LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 323 ~~~~~~-~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
...+.. .++ .++++||++|.|+++|++.|.+.+++.
T Consensus 129 ~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 129 IDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 112222 344 689999999999999999999988753
No 31
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.86 E-value=4.5e-21 Score=181.87 Aligned_cols=153 Identities=25% Similarity=0.385 Sum_probs=118.2
Q ss_pred HHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hHHHHHhcCC--CCeeecccCCC
Q 005979 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGF--SPLPISAISGT 342 (666)
Q Consensus 266 ~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~--~~i~iSa~~g~ 342 (666)
++++++++|+|++|+|++.+....+..+.+++.....++|+++|+||+|+.+.... .....+...+ .++++||.++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 45778999999999999988777777888888764335899999999999754322 1222333223 35789999999
Q ss_pred ChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceE
Q 005979 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF 422 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~ 422 (666)
|+++|++.|.+.+.... .....+|+++|.||||||||+|+|++.....+++++|+|++...... +..+
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~ 149 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL----MKRI 149 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc----CCCE
Confidence 99999999987654211 11246899999999999999999999998999999999998754332 3458
Q ss_pred EEEEcCCC
Q 005979 423 RLIDTAGI 430 (666)
Q Consensus 423 ~liDTpG~ 430 (666)
.|+||||+
T Consensus 150 ~liDtPGi 157 (157)
T cd01858 150 YLIDCPGV 157 (157)
T ss_pred EEEECcCC
Confidence 99999995
No 32
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.1e-20 Score=178.00 Aligned_cols=155 Identities=33% Similarity=0.457 Sum_probs=122.1
Q ss_pred EEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHH
Q 005979 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (666)
Q Consensus 375 ~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (666)
+++|.+|+|||||+|+|++......+..+++|++........ ++..+.+|||||+.+... .........+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~ 73 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE------GISKEIREQAELA 73 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh------HHHHHHHHHHHHH
Confidence 479999999999999999887666788899999888777764 678899999999976422 1223334455667
Q ss_pred HhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccC
Q 005979 455 IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAG 534 (666)
Q Consensus 455 i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g 534 (666)
++.+|++++|+|+.++.+..+..+.+++...++|+++|+||+|+...... ...+...+..+++++||++|
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE----------AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH----------HHHHHhcCCCCeEEEecccC
Confidence 89999999999999888888878888888889999999999999653211 11222333347899999999
Q ss_pred CCHHHHHHHHHH
Q 005979 535 QSVDKIIVAAEM 546 (666)
Q Consensus 535 ~gv~~L~~~i~~ 546 (666)
.|++++++.|.+
T Consensus 144 ~gv~~l~~~l~~ 155 (157)
T cd01894 144 RGIGDLLDAILE 155 (157)
T ss_pred CCHHHHHHHHHh
Confidence 999999999874
No 33
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.9e-20 Score=196.01 Aligned_cols=168 Identities=32% Similarity=0.448 Sum_probs=132.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
-.|+++|.||||||||+|+|+|.....+++.++||++.+...+.. ++..+.+|||||+.+.. ..+.......+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~------~~l~~~~~~~~ 78 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK------RALNRAMNKAA 78 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCch------hHHHHHHHHHH
Confidence 469999999999999999999998888999999999988776653 55799999999986532 12344455667
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..++..+|++++|+|++++++..+..+++.+...++|+++|+||+|+..... ......+.+. ....+.+++++||
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~--~l~~~~~~l~---~~~~~~~i~~iSA 153 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE--ELLPLLEELS---ELMDFAEIVPISA 153 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHH--HHHHHHHHHH---hhCCCCeEEEecC
Confidence 7788999999999999998888888888888877899999999999974321 1111222222 2234678999999
Q ss_pred ccCCCHHHHHHHHHHHHHhc
Q 005979 532 IAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~~ 551 (666)
++|.|+++|++.+.+.+...
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999886543
No 34
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.9e-20 Score=204.91 Aligned_cols=159 Identities=34% Similarity=0.468 Sum_probs=128.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++....++++++|||+|.+...+.+ +|..+.+|||||+.++. ...+.....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~------~~ie~~gi~ 274 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA------DFVERLGIE 274 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch------hHHHHHHHH
Confidence 45799999999999999999999988788999999999999888875 78899999999997642 223445556
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++..+++.+|++++|+|++++.+.++. |+..+...++|+|+|+||+|+... . . + .+....+.+++.+
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~--~-~--------~~~~~~~~~~~~v 341 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-S--L-E--------FFVSSKVLNSSNL 341 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-c--h-h--------hhhhhcCCceEEE
Confidence 778899999999999999998887776 777776678999999999999643 1 1 1 1112234679999
Q ss_pred eCccCCCHHHHHHHHHHHHH
Q 005979 530 TAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~ 549 (666)
||++ .||+++|+.+.+...
T Consensus 342 Sak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEec-CCHHHHHHHHHHHHH
Confidence 9998 599999988876543
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.1e-20 Score=208.54 Aligned_cols=160 Identities=31% Similarity=0.434 Sum_probs=133.7
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|+||||||||+|+|++.....+++.+|+|++.....+.. ++..+.||||||+.... ..+......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~------~~~~~~~~~~~~ 73 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDD------DGLDKQIREQAE 73 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcc------hhHHHHHHHHHH
Confidence 58999999999999999999988778999999999999888774 78899999999985321 233455567788
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCc
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk 532 (666)
.+++.+|++|+|+|+.++++..+..+++++++.++|+++|+||+|+...... . ..+...+..+++++||+
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~-~---------~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV-A---------AEFYSLGFGEPIPISAE 143 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc-H---------HHHHhcCCCCeEEEeCC
Confidence 8999999999999999999999999999999999999999999998653221 1 11233455589999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 005979 533 AGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 533 ~g~gv~~L~~~i~~~~~ 549 (666)
+|.|++++++.+.+.+.
T Consensus 144 ~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 144 HGRGIGDLLDAILELLP 160 (429)
T ss_pred cCCChHHHHHHHHHhcC
Confidence 99999999999987753
No 36
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=1.2e-20 Score=205.32 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=136.0
Q ss_pred hhHhhhcccchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee
Q 005979 129 SRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW 208 (666)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~ 208 (666)
+++..+.++......+++..+.+...+..+...+.|.|+++|+||||||||+|+|++.+.. +.+.+++|.+.....+.+
T Consensus 163 d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l 241 (426)
T PRK11058 163 DRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDV 241 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEe
Confidence 3344455555555555555444433333333446789999999999999999999998744 788999999999888877
Q ss_pred cCe-eEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC
Q 005979 209 GEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (666)
Q Consensus 209 ~~~-~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~ 287 (666)
.+. .+.++||||+.. ..+..+.+. + ..+...+..||++|+|+|++++..
T Consensus 242 ~~~~~~~l~DTaG~~r--~lp~~lve~---------------------------f-~~tl~~~~~ADlIL~VvDaS~~~~ 291 (426)
T PRK11058 242 ADVGETVLADTVGFIR--HLPHDLVAA---------------------------F-KATLQETRQATLLLHVVDAADVRV 291 (426)
T ss_pred CCCCeEEEEecCcccc--cCCHHHHHH---------------------------H-HHHHHHhhcCCEEEEEEeCCCccH
Confidence 664 899999999954 222222211 2 234566789999999999988755
Q ss_pred HHHHH-HHHHHHhh-cCCCcEEEEeccCCCCccchhhHHHHHhcCCC-CeeecccCCCChHHHHHHHHHHhhh
Q 005979 288 AADEE-IADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGFS-PLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 288 ~~d~~-i~~~l~~~-~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~-~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..+.. +.+++... ..++|+++|+||+|+..... ........+.+ ++++||++|.|+++|++.|.+.+..
T Consensus 292 ~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 292 QENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 44432 33444432 13689999999999865321 11122234454 4889999999999999999988753
No 37
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.9e-20 Score=197.59 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=124.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
...|+++|.||||||||+|+|++.. ..++++++||+++....+.+.++.++++|||||+.+... .......+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~-------~~~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS-------EGAGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC-------ccccHHHH
Confidence 3579999999999999999999765 568999999999998888765677899999999965321 11223456
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
.+++++.++++|+|+|+++..+.++.. |...+... ++|+|+|+||+|+.+.... .+ ..+...+. ....
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~---~~~~~~~~-~~~~ 303 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE--RE---KRAALELA-ALGG 303 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HH---HHHHHHHH-hcCC
Confidence 778899999999999998765555554 55556542 6899999999999654221 11 11111122 2246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|+++|++.|.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999876643
No 38
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=2e-20 Score=178.94 Aligned_cols=160 Identities=25% Similarity=0.349 Sum_probs=111.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|||||||+|+|++.. ..+++.+++|.+.....+.. ++..+++|||||+.+...... ...+ .++
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~--~~~~----~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEER--NTIE----MQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCC--chHH----HHH
Confidence 579999999999999999999875 34566778888776666553 677999999999854211100 0011 122
Q ss_pred HHHH-hhCCeEEEEeeccccCC---HHHHHHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 452 FRAI-RRSDVVALVIEAMACIT---EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 452 ~~~i-~~advvllViDa~~~~t---~~d~~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..++ ..+|++|+|+|+++..+ .....++..+... ++|+|+|+||+|+....... + .+.+......+
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~--~------~~~~~~~~~~~ 144 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS--E------IEEEEELEGEE 144 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH--H------HHHhhhhccCc
Confidence 2222 23689999999987543 2334567777665 79999999999996532211 1 12233345678
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++++++.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHH
Confidence 9999999999999999998754
No 39
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=2.8e-20 Score=183.23 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=113.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++... .....|+++.+.....+.. +|. .+.||||||+.++... ..+.+ ..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~-~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEW-MD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc-----chhHH-HH
Confidence 3899999999999999999997653 3334454444443333433 553 6789999998764311 11111 22
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+++.+|++|+|+|++++.+.+... |++.+.+ .++|+|+|+||+|+...+.... +.+........
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~-----~~~~~~~~~~~ 147 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR-----HVLSVLVRKSW 147 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH-----HHHHHHHHHhc
Confidence 3445789999999999999877666544 4455543 3589999999999965332211 11222223334
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+++++++||++|.|+++||+.+.+..-.+
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 68999999999999999999998765443
No 40
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=3.6e-20 Score=202.43 Aligned_cols=175 Identities=20% Similarity=0.214 Sum_probs=126.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
...|++||.||||||||+|+|++.. ..++++|+||+++....+.. ++.+++||||||+..... ........
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas-------~g~gLg~~ 229 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGAS-------EGKGLGLD 229 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE-CCeEEEEEECCCCccccc-------hhhHHHHH
Confidence 4689999999999999999999875 56799999999999888875 667899999999864321 12233456
Q ss_pred HHHHHhhCCeEEEEeeccccC----CHHHHH-HHHHHH--------------HhCCcEEEEEecccCCCCcchhhHHHHH
Q 005979 451 AFRAIRRSDVVALVIEAMACI----TEQDCR-IAERIE--------------QEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~----t~~d~~-i~~~i~--------------~~~~pvIlv~NK~Dl~~~~~~~~~~~~~ 511 (666)
.+++++.||++|+|+|++... ...+.. +..++. ..++|+|||+||+|+.+... . .
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e--l----~ 303 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE--L----A 303 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH--H----H
Confidence 678899999999999997421 122322 222332 23689999999999964321 1 1
Q ss_pred HHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHH
Q 005979 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (666)
Q Consensus 512 ~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln 561 (666)
+.+...+... +.++++|||+++.|+++|+.+|.+.+.....+.++...+
T Consensus 304 e~l~~~l~~~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~~~~~ 352 (500)
T PRK12296 304 EFVRPELEAR-GWPVFEVSAASREGLRELSFALAELVEEARAAEPEAEPT 352 (500)
T ss_pred HHHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCccccc
Confidence 2223333333 468999999999999999999999887765555444433
No 41
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=2.1e-20 Score=198.66 Aligned_cols=164 Identities=27% Similarity=0.415 Sum_probs=130.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|++|||||||+|+|++.+.+.+++.+++|++...+.+.+++.++.+|||||+......
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--------------- 116 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--------------- 116 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc---------------
Confidence 45899999999999999999999988888899999999888888888999999999999642111
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
+...+.+.+..++..||++|||+|+..++...+..+++.++. .+.|.++|+||+|+.......
T Consensus 117 ---------------l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~~~~ 179 (339)
T PRK15494 117 ---------------LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKYLND 179 (339)
T ss_pred ---------------HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccccHHH
Confidence 122344566677899999999999988888877778887766 467889999999986543223
Q ss_pred HHHHHh-cC--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 323 VSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 323 ~~~~~~-~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
...++. .+ ..++++||++|.|+++|++.|.+.+++.
T Consensus 180 ~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 180 IKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred HHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 333332 22 2589999999999999999999988753
No 42
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=3.3e-20 Score=177.70 Aligned_cols=160 Identities=23% Similarity=0.275 Sum_probs=114.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc-eEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ-KFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
.|+++|++|||||||+|+|.+.. ..++..+++|++.....+.. ++. .+.+|||||+.+.... .......+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-------~~~~~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASE-------GKGLGHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccc-------cCCchHHH
Confidence 58999999999999999999765 36777888888877666665 454 8999999998542111 01112344
Q ss_pred HHHHhhCCeEEEEeecccc-CCHHHH-HHHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 452 FRAIRRSDVVALVIEAMAC-ITEQDC-RIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~-~t~~d~-~i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
++.++.+|++++|+|++++ .+.++. .|.+.+.+. ++|+++|+||+|+.+..... ..+...+......
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------~~~~~~~~~~~~~ 146 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF------ELLKELLKELWGK 146 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH------HHHHHHHhhCCCC
Confidence 5567789999999999987 444443 355555443 68999999999996543211 1122233332457
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|+.|.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999998753
No 43
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.85 E-value=3.1e-20 Score=183.05 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=112.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+|+++|..|||||||+++++... +.....++++.+.....+.. ++ ..+.+|||+|+.++..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l------------- 65 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSI------------- 65 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHH-------------
Confidence 368999999999999999999654 33333445555655555554 44 47899999998665332
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh-cCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-ALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~-~~~~~ 524 (666)
...++++||++|+|+|+++..+.++.. |+..+... +.|+|+|+||+|+...+..... ..+.++ ...+.
T Consensus 66 -~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~------~~~~~a~~~~~~ 138 (202)
T cd04120 66 -TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ------QGEKFAQQITGM 138 (202)
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH------HHHHHHHhcCCC
Confidence 234789999999999999987777765 45555443 5899999999999654332211 112222 23357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++|||++|.||+++|.++.+...
T Consensus 139 ~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 139 RFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 44
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.9e-20 Score=174.24 Aligned_cols=155 Identities=56% Similarity=0.891 Sum_probs=126.5
Q ss_pred EEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005979 167 AIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (666)
Q Consensus 167 ~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (666)
+++|++|||||||+|+|++.+....+..+++|++.......+.+..+.+|||||+.....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------------------- 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-------------------- 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--------------------
Confidence 479999999999999999987667788899999998888888899999999999975321
Q ss_pred chhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHH
Q 005979 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~ 326 (666)
.+.+.+.+.+...+..+|++++|+|+.++.+..+..+.++++. .+.|+++|+||+|+...... ...+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~-~~~~ 127 (157)
T cd01894 61 ----------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE-AAEF 127 (157)
T ss_pred ----------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH-HHHH
Confidence 1122344556677889999999999998888777888888876 47999999999999765433 3344
Q ss_pred HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 327 WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 327 ~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
...++ .++++||++|.|++++++.|.+.
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 55666 78999999999999999998765
No 45
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=5.6e-20 Score=173.05 Aligned_cols=154 Identities=42% Similarity=0.599 Sum_probs=123.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|+|||||+|++++.....+.+.+++|.+.....+.. ++..+.+|||||+.+... ..+.....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~ 74 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETED------EIEKIGIERA 74 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcc------hHHHHHHHHH
Confidence 589999999999999999999887667788999999887777664 677999999999876422 2233344566
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
...+..+|++++|+|++++.+..+...+.. ..++|+++|+||+|+...... .......+++++||
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa 139 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISA 139 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEEC
Confidence 778899999999999998888877766654 567999999999999764321 22334578999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAEMV 547 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~ 547 (666)
++|.|+++|++.|.+.
T Consensus 140 ~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 140 KTGEGLDELKEALLEL 155 (157)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 46
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=5.1e-20 Score=198.12 Aligned_cols=166 Identities=22% Similarity=0.260 Sum_probs=122.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
..|+++|.||||||||+|+|++.. .+++++|+||+.+....+...++..++|+||||+.+..+. ......++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~-------~~~Lg~~~ 231 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE-------GAGLGIRF 231 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc-------hhhHHHHH
Confidence 469999999999999999999876 5899999999999999887644567999999999753221 11234556
Q ss_pred HHHHhhCCeEEEEeecc---ccCC-HHHHHHHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 452 FRAIRRSDVVALVIEAM---ACIT-EQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 452 ~~~i~~advvllViDa~---~~~t-~~d~~i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
+++++.+|++++|+|++ ..-. .+...+++++... ++|+|+|+||+|+..... . ....+.+.+ ...
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e--l-~~~l~~l~~---~~~ 305 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE--A-EERAKAIVE---ALG 305 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH--H-HHHHHHHHH---HhC
Confidence 67899999999999987 2222 2334466666653 689999999999964321 1 111222222 222
Q ss_pred C-CCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 523 W-APIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 523 ~-~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+ .+++++||+++.|+++|++.|.+.+.+.
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2 3799999999999999999998877654
No 47
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.9e-20 Score=183.04 Aligned_cols=160 Identities=28% Similarity=0.425 Sum_probs=121.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc-----------------ccCCCcceeeeEeEEEe-cCCCceEEEEEcCCCcc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------------VSPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------------~~~~~gtT~d~~~~~~~-~~~~~~~~liDTpG~~~ 432 (666)
.++|+++|+.++|||||+++|++..... .....+.|.+.....+. ...+..++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4689999999999999999999543211 11123566666555555 23678999999999854
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
+ ...+..+++.+|++|+|+|+.+++..+....+..+...++|+|+|+||+|+.. ....+..+
T Consensus 83 f--------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~----~~~~~~~~ 144 (188)
T PF00009_consen 83 F--------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE----KELEEIIE 144 (188)
T ss_dssp H--------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH----HHHHHHHH
T ss_pred e--------------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh----hhHHHHHH
Confidence 3 34566789999999999999999999999999999999999999999999973 22233334
Q ss_pred HHHHHH-h---cC--CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 513 DVREKL-R---AL--DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 513 ~l~~~l-~---~~--~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++.+.+ . .. ..+|++++||++|.|+++|++.|.+..
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444222 2 22 247899999999999999999998654
No 48
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=6.7e-20 Score=179.60 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=119.1
Q ss_pred ceEEEecCCCCChhHHHHHHhcc------Ccc---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGE------DRT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~ 436 (666)
++|+++|++++|||||+++|++. .+. ......|+|.+.....+.. ++..+.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY--- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHH---
Confidence 68999999999999999999854 111 1112568999988777764 7789999999998542
Q ss_pred ccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHHHH
Q 005979 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVR 515 (666)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~l~ 515 (666)
...+...+..+|++++|+|+..+...++..++..+.+.++| +|+|+||+|+... ....+...+++.
T Consensus 79 -----------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~--~~~~~~~~~~i~ 145 (195)
T cd01884 79 -----------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD--EELLELVEMEVR 145 (195)
T ss_pred -----------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc--HHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999997 7799999999642 233444566677
Q ss_pred HHHhcCC----CCCEEEEeCccCCCHH
Q 005979 516 EKLRALD----WAPIVYSTAIAGQSVD 538 (666)
Q Consensus 516 ~~l~~~~----~~~ii~vSAk~g~gv~ 538 (666)
+.+.+.+ ++|++++||++|.|+.
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCC
Confidence 7777654 4899999999999864
No 49
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=1.9e-20 Score=172.51 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=123.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...+||+++|.+|||||||+|++...+ +.......+..|.....+.. +++ .+++|||+|+.||.++.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg--------- 75 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLG--------- 75 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcc---------
Confidence 446899999999999999999999654 44555566677777777665 444 78999999999987653
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHH-HHHHH-h------CCcEEEEEecccCCCCcchhhHHHHHHHHHHHH
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIA-ERIEQ-E------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKL 518 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~i~-~~i~~-~------~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l 518 (666)
...+|+||++++|+|+...-+.+.+.-| ++... . .-|+||++||+|+......... .+.....+
T Consensus 76 -----~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS---~~~Aq~WC 147 (210)
T KOG0394|consen 76 -----VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS---EKKAQTWC 147 (210)
T ss_pred -----cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee---HHHHHHHH
Confidence 1268999999999999988777776644 33322 2 4689999999998653211111 23345677
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
...+++|++++|||.+.||++.|..+.+..-.
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 78889999999999999999999999876443
No 50
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=7.6e-20 Score=178.56 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=112.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...||+++|..|||||||+.++.... +.....+..+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l----------- 71 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTI----------- 71 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------
Confidence 35799999999999999999999643 32222334455554444443 44 47889999998664322
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++|+|+|+++..+.++.. |+..+.+. +.|+|||+||+||...+.... + + .+.+....+.
T Consensus 72 ---~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~-~----~-~~~~a~~~~~ 142 (189)
T cd04121 72 ---FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVAT-E----Q-AQAYAERNGM 142 (189)
T ss_pred ---HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCH-H----H-HHHHHHHcCC
Confidence 234779999999999999987777765 66666553 689999999999965433221 1 1 2223333457
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.||+++|..|.+..
T Consensus 143 ~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 143 TFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998644
No 51
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1.4e-19 Score=172.76 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=115.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC--CCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.|+++|.+|+|||||+|+|++.. ......+++|.+.....+... .+..+.+|||||+..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------------- 65 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------------- 65 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH--------------
Confidence 469999999999999999999764 334455567776654455432 367899999999754321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh-----cCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-----ALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~-----~~~~~ 524 (666)
....+++.+|++++|+|++++...+....+..+...++|+++|+||+|+...... .+...+.+... .....
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPE----RVKNELSELGLQGEDEWGGDV 141 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHH----HHHHHHHHhhccccccccCcC
Confidence 1233568999999999999887777777788888889999999999998643211 11122221111 12246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|+.+|+++|.+..+
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHhhh
Confidence 8999999999999999999986643
No 52
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=1e-19 Score=198.01 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=120.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++.... +.+.+++|+|+....+..+++..+.+|||||+.+..+. ...+. ..
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~----~lve~--f~ 268 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH----DLVAA--FK 268 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH----HHHHH--HH
Confidence 4479999999999999999999988754 78899999999887777655558999999998553111 11222 34
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH----HHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR----IAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~----i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
.+...++.||++|+|+|++++.+..+.. ++..+...++|+++|+||+|+.+... .. . . .. . .+.+
T Consensus 269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~---~-~---~~--~-~~~~ 337 (426)
T PRK11058 269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PR---I-D---RD--E-ENKP 337 (426)
T ss_pred HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-HH---H-H---HH--h-cCCC
Confidence 5677889999999999999887666653 33433334799999999999964311 10 1 0 00 1 1234
Q ss_pred -EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 -IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 -ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|+++|++.|.+.+.
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999987764
No 53
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=6.2e-20 Score=173.34 Aligned_cols=154 Identities=22% Similarity=0.354 Sum_probs=114.4
Q ss_pred EecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH
Q 005979 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (666)
Q Consensus 376 vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (666)
++|.+|||||||+|++++.. ..+++.+++|++.....+.+ ++..+.+|||||+.++.... .+.... ..++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~-----~~~~~~---~~~~ 70 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYS-----EDEKVA---RDFL 70 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCC-----hhHHHH---HHHh
Confidence 58999999999999999875 67788899999988777775 67899999999997754321 111111 2233
Q ss_pred --hhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCcc
Q 005979 456 --RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIA 533 (666)
Q Consensus 456 --~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~ 533 (666)
..+|++++|+|+.+. .....++.++.+.++|+++|+||+|+.+..... .. .. .+....+.+++++||++
T Consensus 71 ~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~--~~-~~----~~~~~~~~~~~~iSa~~ 141 (158)
T cd01879 71 LGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIK--ID-LD----KLSELLGVPVVPTSARK 141 (158)
T ss_pred cCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccch--hh-HH----HHHHhhCCCeEEEEccC
Confidence 589999999999874 344556667777899999999999996543211 11 11 22222357899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 005979 534 GQSVDKIIVAAEMVD 548 (666)
Q Consensus 534 g~gv~~L~~~i~~~~ 548 (666)
|.|+++++..+.++.
T Consensus 142 ~~~~~~l~~~l~~~~ 156 (158)
T cd01879 142 GEGIDELKDAIAELA 156 (158)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987653
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.83 E-value=5.2e-20 Score=174.91 Aligned_cols=153 Identities=20% Similarity=0.186 Sum_probs=106.8
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||++++++... ...+.+|+.+.....+.. ++ ..+.+|||||+.++..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFTAMR------------ 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccchHH------------
Confidence 5899999999999999999996542 233444555554444543 44 367889999987653321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|+++..+.++.. |+..+.+. ++|+++|+||+|+...+.... + .... +....+.
T Consensus 67 --~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~-~~~~----~~~~~~~ 138 (163)
T cd04136 67 --DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR-E-EGQA----LARQWGC 138 (163)
T ss_pred --HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH-H-HHHH----HHHHcCC
Confidence 23678999999999998866555443 55555542 689999999999965332211 1 1111 2222237
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|+.++|.++.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999998753
No 55
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.3e-19 Score=179.44 Aligned_cols=192 Identities=25% Similarity=0.276 Sum_probs=128.7
Q ss_pred hhhcccchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe
Q 005979 132 LIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH 211 (666)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 211 (666)
..++++...+++.....+.+......+.+...++|+++|++|||||||+|+|++.. ..+.+.++.|.+.....+.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~ 88 (204)
T cd01878 10 LIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDG 88 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCC
Confidence 44444555555555444444433333445567899999999999999999999976 34556667777777777777664
Q ss_pred -eEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH
Q 005979 212 -EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (666)
Q Consensus 212 -~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d 290 (666)
.+.+|||||+... ...... ..+ ......+..+|++++|+|++.+....+
T Consensus 89 ~~~~i~Dt~G~~~~--~~~~~~---------------------------~~~-~~~~~~~~~~d~ii~v~D~~~~~~~~~ 138 (204)
T cd01878 89 REVLLTDTVGFIRD--LPHQLV---------------------------EAF-RSTLEEVAEADLLLHVVDASDPDYEEQ 138 (204)
T ss_pred ceEEEeCCCccccC--CCHHHH---------------------------HHH-HHHHHHHhcCCeEEEEEECCCCChhhH
Confidence 8999999998542 111110 011 122344678999999999987755443
Q ss_pred H-HHHHHHHhhc-CCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 291 E-EIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 291 ~-~i~~~l~~~~-~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. .+.+++.... .++|+++|+||+|+....... ......+.+++++||++|.|+.++++.|...+
T Consensus 139 ~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 139 IETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 2 3445554421 368999999999987654322 12223344789999999999999999987643
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1e-19 Score=201.25 Aligned_cols=159 Identities=33% Similarity=0.431 Sum_probs=128.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|++|||||||+|+|++.....+.+.+|+|++.....+.. ++..+.+|||||+.+.. .........++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~------~~~~~~~~~~~ 74 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD------DGFEKQIREQA 74 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc------hhHHHHHHHHH
Confidence 589999999999999999999987778899999999998887775 77899999999997521 11233345566
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..+++.+|++|+|+|++++.+..+..++.++.+.++|+|+|+||+|+... ... . ..+...+...++++||
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~-~~~--------~-~~~~~lg~~~~~~iSa 144 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE-EAD--------A-YEFYSLGLGEPYPISA 144 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc-hhh--------H-HHHHhcCCCCCEEEEe
Confidence 77899999999999999999998888889999999999999999997541 111 1 1112233345899999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAEMV 547 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~ 547 (666)
++|.|++++++.|...
T Consensus 145 ~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 145 EHGRGIGDLLDAILEE 160 (435)
T ss_pred eCCCCHHHHHHHHHhh
Confidence 9999999999999873
No 57
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.8e-19 Score=174.33 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=110.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccc--------------ccCCCcceeeeEeEEEec----CCCceEEEEEcCCCccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTI--------------VSPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~--------------~~~~~gtT~d~~~~~~~~----~~~~~~~liDTpG~~~~ 433 (666)
++|+++|++|||||||+++|++..... .....|+|.......+.+ ..+..+.||||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 369999999999999999999743211 111235565544333322 13457889999998654
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
. ..+..+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+..... ....+.
T Consensus 81 ~--------------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~----~~~~~~ 142 (179)
T cd01890 81 S--------------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP----ERVKQQ 142 (179)
T ss_pred H--------------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH----HHHHHH
Confidence 2 2344578899999999999998888887777666677899999999999864221 112223
Q ss_pred HHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+.+.+. ....+++++||++|.|+++|++.|.+.
T Consensus 143 ~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 143 IEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 333332 222359999999999999999998754
No 58
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=4.8e-20 Score=183.62 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=119.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+||+++|.+|||||||+++|++....... +.++.+.....+...+ ...+.||||||+.++..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------- 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL------------- 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH-------------
Confidence 479999999999999999999977543333 3333333333333322 247899999998665322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|+++..+.++.. |...+.. .+.|+++|+||+|+...+.....+ ...+....+
T Consensus 79 -~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~------~~~~~~~~~ 151 (211)
T PLN03118 79 -TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE------GMALAKEHG 151 (211)
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH------HHHHHHHcC
Confidence 234789999999999999876666654 3333332 257899999999997543322111 111222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHhcccCC---CchhHHHHHHHHHHccCCC
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKERSRRL---STATINQVVQEAVAFKSPP 574 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i---~t~~ln~~l~~~~~~~~~p 574 (666)
++++++||++|.|++++|..|.+.+....... .+...+..+++.....+||
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPP 205 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCC
Confidence 78999999999999999999987765433222 3444555555554444444
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=9.9e-20 Score=173.16 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=108.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|.+|+|||||++++++.. .+..+.+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------------ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFSAM------------ 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchhHH------------
Confidence 3699999999999999999999754 2455555665555444443 44 36889999998664221
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++++|+|+++..+.+... |+..+.. .+.|+++|+||+|+........ + ...+. ....+
T Consensus 67 --~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~-~----~~~~~-~~~~~ 138 (164)
T cd04145 67 --REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR-E----EGQEL-ARKLK 138 (164)
T ss_pred --HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH-H----HHHHH-HHHcC
Confidence 234678999999999999865554443 4444443 3689999999999965432211 1 11222 22234
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
.+++++||++|.|++++|+.|.+.
T Consensus 139 ~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 139 IPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHh
Confidence 689999999999999999998754
No 60
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.9e-19 Score=176.55 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=115.3
Q ss_pred ceEEEecCCCCChhHHHHHHhcc------CcccccCCCcceeeeEeEEEecC-------------CCceEEEEEcCCCcc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGE------DRTIVSPISGTTRDAIDTEFTGP-------------EGQKFRLIDTAGIRK 432 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~------~~~~~~~~~gtT~d~~~~~~~~~-------------~~~~~~liDTpG~~~ 432 (666)
++|+++|++|+|||||+++|++. +.......+|+|.+.....+.+. .+..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999963 22233445678888765555432 256899999999742
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcch-hhHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ-QTATYYE 511 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~-~~~~~~~ 511 (666)
+ ...+......+|++++|+|++++.+.++...+......++|+++|+||+|+...... ...+.+.
T Consensus 81 ~--------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 81 L--------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred H--------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 1 234455677899999999999988777766555555568999999999999743221 1122233
Q ss_pred HHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 512 QDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 512 ~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+.+...+.. ..+.+++++||++|.|+++|++.+...
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 333333322 245789999999999999999988743
No 61
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=170.54 Aligned_cols=172 Identities=24% Similarity=0.299 Sum_probs=127.3
Q ss_pred cCCCCCCCCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhh
Q 005979 156 GNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (666)
Q Consensus 156 ~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~ 234 (666)
.+.+....+.||++|++|||||||+|+|++++ .+.++.+||.|+..+...+ +..+.+||.||++--.... ..
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYGyAkv~k-~~--- 89 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYGYAKVPK-EV--- 89 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcccccCCH-HH---
Confidence 34455678899999999999999999999965 5899999999999887544 2348999999997532221 11
Q ss_pred hhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCC
Q 005979 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (666)
Q Consensus 235 ~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D 314 (666)
...|...+.+..... .+-.++++++|+++++...|+++++|+.. .+.|+++|+||+|
T Consensus 90 --------------------~e~w~~~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~D 146 (200)
T COG0218 90 --------------------KEKWKKLIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKAD 146 (200)
T ss_pred --------------------HHHHHHHHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccc
Confidence 112223333222222 33678999999999999999999999998 6999999999999
Q ss_pred CCccchhhH-----HHHHhcCC--C--CeeecccCCCChHHHHHHHHHHhhh
Q 005979 315 SPRKGIMQV-----SEFWSLGF--S--PLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 315 ~~~~~~~~~-----~~~~~~~~--~--~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
......... .+...... . ++..|+..+.|+++|...|.+.+..
T Consensus 147 Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 147 KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 987543221 11112222 2 6788999999999999999887653
No 62
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.8e-19 Score=178.40 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=113.8
Q ss_pred hcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 368 ~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
.+..++|+++|.+|||||||+|++++.. ..+...+++|.+.....+...++..+.+|||||+.+.... ...+ .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~~~--~ 110 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH----QLVE--A 110 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCH----HHHH--H
Confidence 3456899999999999999999999865 3455666777777666666534448999999998543110 0111 1
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+...+..+|++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+..... .......
T Consensus 111 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----------~~~~~~~ 179 (204)
T cd01878 111 FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----------ERLEAGR 179 (204)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----------HHhhcCC
Confidence 233445678999999999999876665543 3344433 368999999999996532110 1122345
Q ss_pred CCEEEEeCccCCCHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.+++++||++|.|++++++.|.+
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 78999999999999999998864
No 63
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.9e-19 Score=177.94 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=109.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++|++.. +.....+++..+.....+...++ ..+.+|||||..++..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~------------- 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM------------- 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------------
Confidence 489999999999999999999754 33333444445554444443213 36899999998654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
...+++.+|++|+|+|++++.+.+... |+..+.. .++|+|||+||+|+.+...... +++.+.....
T Consensus 67 -~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~-----~~~~~~~~~~ 140 (201)
T cd04107 67 -TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDG-----EQMDQFCKEN 140 (201)
T ss_pred -HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCH-----HHHHHHHHHc
Confidence 234789999999999999876666654 4444432 3679999999999964322221 1223333333
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+..+++++||++|.||+++|.+|.+.+
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 446899999999999999999998654
No 64
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=1.3e-19 Score=173.39 Aligned_cols=157 Identities=18% Similarity=0.097 Sum_probs=108.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+||+++|.+|||||||++++++.. +.....++++.+.....+...+ ...+.+|||||+.++..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------------- 67 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------------- 67 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH--------------
Confidence 5799999999999999999999764 3333344444444333343322 23789999999755322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|++++.+.++.. |+..+... +.|+++|+||+|+.+...... + ...+. ......+
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~----~~~~~-~~~~~~~ 141 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSK-E----EGEAL-ADEYGIK 141 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH-H----HHHHH-HHHcCCE
Confidence 1234779999999999998876655543 55555543 689999999999975432221 1 11122 2223568
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|..+.+..
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 65
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=1.8e-19 Score=190.20 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=120.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
...|+++|.||||||||+|+|++.. ..++++++||+.+....+.+.++..++||||||+...... .......
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~-------~~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE-------GAGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc-------cccHHHH
Confidence 3579999999999999999999764 5688999999999888887644489999999998653211 1123455
Q ss_pred HHHHHhhCCeEEEEeecccc---CCHHHHH-HHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 451 AFRAIRRSDVVALVIEAMAC---ITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~---~t~~d~~-i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
++++++.+|++|+|+|+++. .+.++.. |.+++.. .++|+++|+||+|+..... .+.. .+.+...
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~----~~~l~~~ 301 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAEL----LKELKKA 301 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHH----HHHHHHH
Confidence 67788999999999999864 2333433 4455544 2689999999999965321 1222 2223222
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
.+.+++++||+++.|+++|++.|.+.+
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 246899999999999999999997643
No 66
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=9.8e-20 Score=180.92 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=113.4
Q ss_pred eEEEecCCCCChhHHHHHHhccCccccc------------------------------CCCcceeeeEeEEEecCCCceE
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQKF 422 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~------------------------------~~~gtT~d~~~~~~~~~~~~~~ 422 (666)
+|+++|++|+|||||+++|++....+.. ...|+|++.....+.. ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999865544331 1268999998888764 78899
Q ss_pred EEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC-cEEEEEecccCCCC
Q 005979 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPN 501 (666)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~-pvIlv~NK~Dl~~~ 501 (666)
.||||||+.++. ..+..+++.+|++|+|+|++.+...++..++..+...+. ++|+|+||+|+...
T Consensus 80 ~liDTpG~~~~~--------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 80 IIADTPGHEQYT--------------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEEECCcHHHHH--------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999985431 234457889999999999999888888777777777775 47889999999643
Q ss_pred cchhhHHHHHHHHHHHHhcCC--CCCEEEEeCccCCCHHHH
Q 005979 502 KNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 502 ~~~~~~~~~~~~l~~~l~~~~--~~~ii~vSAk~g~gv~~L 540 (666)
. ..........+...+...+ ..+++++||++|.|+.+.
T Consensus 146 ~-~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 146 S-EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred C-HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2 2223334444554444443 357999999999999864
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=1.7e-19 Score=172.30 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=109.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|||||||++++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~------------- 66 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT------------- 66 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHH-------------
Confidence 3689999999999999999999764 33344455555554444543 33 3789999999755422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++|+|+|+++..+..... |+..+.. .+.|+++|+||+|+........ + .. ..+....++
T Consensus 67 -~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~-~----~~-~~~~~~~~~ 139 (166)
T cd01869 67 -ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY-S----EA-QEFADELGI 139 (166)
T ss_pred -HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH-H----HH-HHHHHHcCC
Confidence 1234678999999999998865554433 4555544 3589999999999865433221 1 11 122223457
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|..|.+.+
T Consensus 140 ~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 140 PFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998654
No 68
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=1.5e-19 Score=172.22 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=107.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++++... ....+++|+.+.....+.. ++. .+.+|||||+.++..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~------------- 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAM------------- 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEE-CCEEEEEEEEECCCcccchhH-------------
Confidence 589999999999999999998543 2344555666555545554 433 5779999998665332
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|.++..+.++.. |+..+.+ .+.|+++|+||+|+........ +. ... +....+.
T Consensus 66 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~----~~~~~~~ 138 (164)
T cd04175 66 -RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK-EQ-GQN----LARQWGC 138 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH-HH-HHH----HHHHhCC
Confidence 123789999999999998765555433 5555543 3689999999999965432221 11 112 2222247
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|.+|.+.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999754
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.82 E-value=1.6e-19 Score=180.41 Aligned_cols=157 Identities=16% Similarity=0.112 Sum_probs=111.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC--CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+|+|++.. +.....+.++.|.....+...+ ...+.||||||+..+..+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l------------- 66 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM------------- 66 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH-------------
Confidence 489999999999999999999764 4444455666676555555433 347899999997543221
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh------CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~------~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
...+++.+|++|+|+|+++..+.++.. |+..+.+. +.|+++|+||+|+...+.... + . .+.+....
T Consensus 67 -~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~-~----~-~~~~~~~~ 139 (215)
T cd04109 67 -LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKD-D----K-HARFAQAN 139 (215)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCH-H----H-HHHHHHHc
Confidence 234688999999999999876665554 55666543 357999999999965433221 1 1 12223333
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++++||++|.|++++|+.|.+.+.
T Consensus 140 ~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 140 GMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 70
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=6.4e-19 Score=166.99 Aligned_cols=164 Identities=33% Similarity=0.439 Sum_probs=123.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|+|||||+|+|++.......+.+.+++......+.. .+..+.+|||||+...... ........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~------~~~~~~~~ 75 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKK------LGERMVKA 75 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHH------HHHHHHHH
Confidence 3689999999999999999999887666777777888776655543 5678999999998654321 12223344
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
....+..+|++++|+|++++.+..+..++..+...+.|+++|+||+|+..... ....... .........+++++|
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~---~~~~~~~~~~~~~~s 150 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE--DLLPLLE---KLKELGPFAEIFPIS 150 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH--HHHHHHH---HHHhccCCCceEEEE
Confidence 56678999999999999988777777778888888899999999999964221 1111222 222233357899999
Q ss_pred CccCCCHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEM 546 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~ 546 (666)
|+++.|++++++.|.+
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 9999999999999865
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=1.4e-19 Score=172.95 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=103.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|.+|||||||++++++.. +.....+.+. ......+.. .....+.+|||||+.++..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAM-------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcchHH--------------
Confidence 589999999999999999999764 2222223221 111112221 12347899999998765322
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|+++..+.+... |+..+.+ .++|+++|+||+|+...+.....+ ...+.....
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~------~~~~~~~~~ 139 (165)
T cd04140 66 QRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE------GAACATEWN 139 (165)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH------HHHHHHHhC
Confidence 223678999999999999876665543 5555554 358999999999996533322111 112222234
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++++||++|.|++++|++|...
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHhc
Confidence 789999999999999999998753
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=2.6e-19 Score=170.37 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=104.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|||||||++++++.. +.....+....+......... ....+.+|||||+.++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM-------------- 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--------------
Confidence 489999999999999999999654 222222222222222222221 2336889999998664322
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
...+++.+|++|+|+|++++.+.++. .|+..+.+. ++|+++|+||+|+... . . . .. ..+....+.+++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~-~-~----~~-~~~~~~~~~~~~ 136 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--V-T-Q----KK-FNFAEKHNLPLY 136 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--H-H-H----HH-HHHHHHcCCeEE
Confidence 23478999999999999987766554 466667654 7999999999998431 1 1 1 11 112222357899
Q ss_pred EEeCccCCCHHHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++||++|.|++++|+.+.+...
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 137 YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999986544
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.82 E-value=1.9e-19 Score=171.40 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=106.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+|++++... ...+.+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~------------- 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFSAM------------- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccchHH-------------
Confidence 3899999999999999999997652 233344555544444443 33 37889999998765321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.+... |...+.+ .++|+++|+||+|+...+.... + .. ..+....+.
T Consensus 65 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~-~----~~-~~~~~~~~~ 137 (164)
T smart00173 65 -RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST-E----EG-KELARQWGC 137 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH-H----HH-HHHHHHcCC
Confidence 123678999999999998865554433 3444433 2689999999999965432221 1 11 112222347
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|++++|+.|.+...
T Consensus 138 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 138 PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999986543
No 74
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=3.9e-19 Score=172.34 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=113.3
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...++|+++|.+|+|||||+|+|++.. ...+++.+|+|++.....+ + ..+.+|||||+...... .......
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~----~~~~~~~ 87 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVS----KEEKEKW 87 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCC----hhHHHHH
Confidence 346799999999999999999999875 4567788888887654332 2 36999999997542110 0001111
Q ss_pred HHHHHHHHh---hCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC-C
Q 005979 448 VNRAFRAIR---RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD-W 523 (666)
Q Consensus 448 ~~~~~~~i~---~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~-~ 523 (666)
......+++ .+|++++|+|++++++..+..+++.+...++|+++|+||+|+..... .+...+.+++.+.... .
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSE---LNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHH---HHHHHHHHHHHHhhccCC
Confidence 111123343 46899999999999999999888888888999999999999975321 2233445555555543 3
Q ss_pred CCEEEEeCccCCCHH
Q 005979 524 APIVYSTAIAGQSVD 538 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~ 538 (666)
.+++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 589999999999973
No 75
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.8e-20 Score=172.08 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=126.4
Q ss_pred hhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhh
Q 005979 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTE 444 (666)
Q Consensus 367 ~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e 444 (666)
+-+..+||+++|+++||||-|+.++... .+.....+++..+.....+.. +++ +.+||||+|+.|++.+..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitS------ 81 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITS------ 81 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccc------
Confidence 4456789999999999999999999954 456666666777776666664 555 679999999999876543
Q ss_pred HHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc
Q 005979 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (666)
Q Consensus 445 ~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~ 520 (666)
.|+++|.++++|||++...|.+... |+++++++ ++++++|+||+||..-+.... +-.+.+++
T Consensus 82 --------aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~t------e~~k~~Ae 147 (222)
T KOG0087|consen 82 --------AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPT------EDGKAFAE 147 (222)
T ss_pred --------hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccch------hhhHhHHH
Confidence 3899999999999999988887654 88888875 689999999999976443322 23456677
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..+..++++||..+.||++.|..+...
T Consensus 148 ~~~l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 148 KEGLFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred hcCceEEEecccccccHHHHHHHHHHH
Confidence 778899999999999999999777644
No 76
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=3.5e-19 Score=175.02 Aligned_cols=151 Identities=22% Similarity=0.236 Sum_probs=108.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccccc---------------CCCcceeeeEeEEEecCCCceEEEEEcCCCcccccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~---------------~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~ 436 (666)
++|+++|.+|||||||+++|++....... ...|+|.+.....+.. ++..+.+|||||+.++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFG-- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHH--
Confidence 58999999999999999999963211111 1246666665555553 67799999999986542
Q ss_pred ccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHH
Q 005979 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (666)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~ 516 (666)
.....+++.+|++++|+|++++...+...++..+...++|+++|+||+|+...... .....+.+
T Consensus 80 ------------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~~~ 143 (194)
T cd01891 80 ------------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPE----EVVDEVFD 143 (194)
T ss_pred ------------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHH----HHHHHHHH
Confidence 23445789999999999999877677667777777789999999999999653221 12223333
Q ss_pred HHhc------CCCCCEEEEeCccCCCHHHHH
Q 005979 517 KLRA------LDWAPIVYSTAIAGQSVDKII 541 (666)
Q Consensus 517 ~l~~------~~~~~ii~vSAk~g~gv~~L~ 541 (666)
.+.. ..+.+++++||++|.|+.++-
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred HHHHhCCccccCccCEEEeehhccccccccc
Confidence 3311 225789999999999986543
No 77
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=1.5e-19 Score=176.92 Aligned_cols=154 Identities=20% Similarity=0.228 Sum_probs=106.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
||+++|.+|||||||+++|++.. + ...+++|+.+.....+.. ++. .+.+|||||..++..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------------- 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-F-VETYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYTAL-------------- 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C-CccCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhHHH--------------
Confidence 58999999999999999999654 2 233444444443333433 444 5889999998654321
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|+++..+.++.. |+..+.. .++|+|+|+||+|+...+.....+ ...+....+
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~------~~~~~~~~~ 137 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE------GAALARRLG 137 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH------HHHHHHHhC
Confidence 234789999999999998876655543 5555543 258999999999996543322111 112222234
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..+.+...
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999986543
No 78
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=2.8e-19 Score=172.72 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=108.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++++... +. ..+..|..+.....+.. ++ ..+.||||||..++..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~-~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FP-SEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLR------------ 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CC-CCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchhhhh------------
Confidence 689999999999999999999654 32 33434444444334443 44 478899999997654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH--------HHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY--------EQDVREK 517 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~--------~~~l~~~ 517 (666)
..+++.+|++|+|+|+++..+.++.. |+..+... +.|+|||+||+|+...... .+.. .....+.
T Consensus 67 --~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~l~~~~~~~v~~~~~~~ 142 (175)
T cd01874 67 --PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPST--IEKLAKNKQKPITPETGEK 142 (175)
T ss_pred --hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhh--HHHhhhccCCCcCHHHHHH
Confidence 22678999999999999887777653 66666543 6899999999998643110 0000 0011122
Q ss_pred Hh-cCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 518 LR-ALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 518 l~-~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++ ..+..+++++||++|.|++++|+.+.++
T Consensus 143 ~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 143 LARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 22 2334689999999999999999998764
No 79
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=3.1e-19 Score=172.32 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=111.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.++||||||+.+++... +.....| |..+.....+.. ++ ..+.+|||+|..++..+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~------------ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNFSANVSV-DGNTVNLGLWDTAGQEDYNRLR------------ 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeeeEEEEEE-CCEEEEEEEEECCCCccccccc------------
Confidence 589999999999999999999654 4333334 333333334443 44 378999999998775543
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhh----HHHHHHHHHHHHhcC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQT----ATYYEQDVREKLRAL 521 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~----~~~~~~~l~~~l~~~ 521 (666)
..+++.+|++|+|+|+++..+.+.. .|+..+... +.|+|||+||+||.+.+.... ...+...-.+.++..
T Consensus 67 --~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 67 --PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred --hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 2278999999999999998888875 477777653 689999999999965321000 000011112233333
Q ss_pred CCC-CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWA-PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~-~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
.+. ++++|||++|.||+++|..+.+..
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 345 699999999999999999998654
No 80
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=4.5e-19 Score=187.27 Aligned_cols=165 Identities=27% Similarity=0.312 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...+.|+|||.||||||||+|+|++.+ ..++++|++|.+...+.+.+ ++.++.++||||+.........
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g--------- 225 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG--------- 225 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc---------
Confidence 345789999999999999999999976 56899999999999999888 5678999999999753221111
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh---cCCCcEEEEeccCCC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCES 315 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~---~~~~p~ilv~NK~D~ 315 (666)
+..++.+.+++++++++|+|++...+.++. .+.+.|... ..++|+++|+||+|+
T Consensus 226 ----------------------Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 226 ----------------------LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred ----------------------HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 235677888999999999999864333332 344444432 136899999999998
Q ss_pred Cccchhh---HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 316 PRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 316 ~~~~~~~---~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
....... ...+ ...+..++++||+++.|+++|++.|.+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 284 LDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7543211 1112 2345688999999999999999999988764
No 81
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.82 E-value=2.2e-19 Score=197.63 Aligned_cols=156 Identities=33% Similarity=0.426 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|+||||||||+|+|++...+.+.+.+|+|++.....+.+++..+.+|||||+.... ...+.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~----~~ie~~------- 283 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD----DEVEKI------- 283 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc----cHHHHH-------
Confidence 468999999999999999999998877889999999999998889999999999999986421 111110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
-.+.+...+..+|++++|+|++++.+..+..++.. ..++|+++|+||+|+.......
T Consensus 284 -------------------gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~~~~ 340 (449)
T PRK05291 284 -------------------GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEIDLE 340 (449)
T ss_pred -------------------HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccchhh
Confidence 01335567899999999999988877665444333 2578999999999987543221
Q ss_pred HHHHHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 323 ~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
...+.+++++||++|.|+++|++.|.+.+.
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 223457899999999999999999987765
No 82
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.82 E-value=2.7e-19 Score=169.45 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=104.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+|+|++... ...+.+|+.+.....+.. ++. .+.+|||||+.++..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l------------- 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------- 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEE-CCEEEEEEEEECCCCcchHHH-------------
Confidence 5899999999999999999997642 233444554444444443 443 5788999998654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.++.. |+..+.+ .++|+++|+||+|+.... ... . ...+.. ...+.
T Consensus 66 -~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~-~----~~~~~~-~~~~~ 137 (162)
T cd04138 66 -RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-VSS-R----QGQDLA-KSYGI 137 (162)
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-ecH-H----HHHHHH-HHhCC
Confidence 234788999999999998765555543 4444443 378999999999996521 111 1 111111 22246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|+.+.+.
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred eEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998753
No 83
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.82 E-value=3.2e-19 Score=171.78 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=108.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++.. +. ..+..|..+.....+.. ++ ..+.||||||..++..+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~-f~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l------------- 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS-FP-DYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAEFTAM------------- 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CC-CCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchhhHHH-------------
Confidence 689999999999999999999654 22 22333333333334443 44 36889999998654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.+... |+..+.+ .++|+++|+||+|+...+.....+ ...+....++
T Consensus 67 -~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~------~~~~a~~~~~ 139 (172)
T cd04141 67 -RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEE------GRNLAREFNC 139 (172)
T ss_pred -hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHH------HHHHHHHhCC
Confidence 234788999999999999988877765 4444443 368999999999986543322111 1222223357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++|||++|.||+++|.++.+..
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999999997543
No 84
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=6e-19 Score=168.68 Aligned_cols=161 Identities=26% Similarity=0.355 Sum_probs=113.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
|+|+++|++|||||||+|+|++.. ..+...++.|.+...+...+.+.++.+|||||+.........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------------- 66 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN------------- 66 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCc-------------
Confidence 579999999999999999999986 345667788888888777778889999999998642111110
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHH-HhccEEEEEecCCCCCC---HHHHHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAI-EESCVIIFLVDGQAGLT---AADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i-~~ad~il~VvD~~~~~~---~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.+..+....+ ..+|++|+|+|+.+... .....+.+.++....+.|+++|+||+|+....
T Consensus 67 -----------------~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 67 -----------------TIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred -----------------hHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 0111122222 23689999999976533 22234556665533478999999999986543
Q ss_pred hhh-HHHHHh-cCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 320 IMQ-VSEFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 ~~~-~~~~~~-~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ...+.. .+..++++||++|.|+.+++++|.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 130 DLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 221 222223 245789999999999999999998754
No 85
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=175.66 Aligned_cols=162 Identities=28% Similarity=0.393 Sum_probs=129.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
...|+|+++|+||||||||+++|++.+ ..+.++|++|+....|.+..++..+++|||||+.+......
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er----------- 233 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER----------- 233 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh-----------
Confidence 357899999999999999999999998 78899999999999999999999999999999987432221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHh-ccEEEEEecCCC--CCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQA--GLTAAD-EEIADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~-ad~il~VvD~~~--~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
..|++|+..++++ .++|||++|.+. |++.+. ..+++.++..+. .|+++|+||+|..
T Consensus 234 -------------------N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 234 -------------------NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIA 293 (346)
T ss_pred -------------------cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEeccccc
Confidence 2367888888866 899999999864 677555 467888887754 8999999999987
Q ss_pred ccchhhHHH--HHhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 317 RKGIMQVSE--FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 317 ~~~~~~~~~--~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
+.+...... ....|. .+..+++..+.+++.+.+.+...
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred chhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 544333222 233344 58899999999999888877655
No 86
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=2.8e-19 Score=170.48 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=108.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|.+|||||||++++++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~------------- 67 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRA------------- 67 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHH-------------
Confidence 4699999999999999999999765 33444555555555444543 34 3689999999754322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.++++|+|+|+++..+.++.. |+..+.+. ++|+++|+||+|+...+... .+ +..... ...+.
T Consensus 68 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~-~~----~~~~~~-~~~~~ 140 (165)
T cd01868 68 -ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-TE----EAKAFA-EKNGL 140 (165)
T ss_pred -HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-HH----HHHHHH-HHcCC
Confidence 1234678999999999999866655543 55555442 58999999999996543222 11 111222 22357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|+.+.+.
T Consensus 141 ~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 141 SFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998753
No 87
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.9e-19 Score=190.84 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=120.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
..|+++|.||||||||+|+|++.. ..++++|+||..+....+.+.++..+.||||||+....+. ........
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-------~~gLg~~f 230 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-------GVGLGHQF 230 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-------cchHHHHH
Confidence 479999999999999999999775 4678899999999888777644789999999998653221 12234566
Q ss_pred HHHHhhCCeEEEEeecccc---CCHHH-HHHHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 452 FRAIRRSDVVALVIEAMAC---ITEQD-CRIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~---~t~~d-~~i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
++++++++++|+|+|+++. ...++ ..|.+++.. .++|+|||+||+|+... ... .+.+.+.+.
T Consensus 231 Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~----l~~l~~~l~--- 301 (424)
T PRK12297 231 LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EEN----LEEFKEKLG--- 301 (424)
T ss_pred HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHH----HHHHHHHhC---
Confidence 7788999999999999753 22333 345566654 37899999999998432 111 122222222
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
.+++++||++|.|+++|++.|.+.+...
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 6799999999999999999998776543
No 88
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=3.2e-19 Score=170.42 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=105.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~-------------- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRT-------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHH--------------
Confidence 589999999999999999999765 22223333333332223322 33 4789999999755322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|+++..+.+... |+..+... ..|+++|+||+|+.+.+.... +. ... +....+.+
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-~~-~~~----~~~~~~~~ 139 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSS-ER-GRQ----LADQLGFE 139 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCH-HH-HHH----HHHHcCCE
Confidence 2245689999999999998765544433 55566543 578999999999975433221 11 111 22223468
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|+.+.+..
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997653
No 89
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=6.7e-19 Score=172.55 Aligned_cols=157 Identities=19% Similarity=0.175 Sum_probs=107.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++.........++++.+.....+.. ++ ..+.||||||..++..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-------------- 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRS-------------- 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHH--------------
Confidence 489999999999999999999765322233344444443333333 33 3789999999754322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++|+|+|+++..+.++.. |+..+.+. +.|+++|+||+|+...+.... + . .+.+....+.+
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~-~----~-~~~l~~~~~~~ 139 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR-E----D-GERLAKEYGVP 139 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH-H----H-HHHHHHHcCCe
Confidence 1234678999999999998865554433 55555553 679999999999965332221 1 1 11222223578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++|..|.+.+.
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999986643
No 90
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-19 Score=167.09 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=121.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+|++++|+.|||||+|+.+++... +..-.-.+...+.....+.. +++ ++++|||+|+..|.++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv----------- 71 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSV----------- 71 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHH-----------
Confidence 35799999999999999999999654 54444455666666666665 444 8899999999776544
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
+..|++.|.++|||+|+++.-++..+. |+..++.+ +.-++|++||+||...+..... -.+.++...+
T Consensus 72 ---~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~E------EGeaFA~ehg 142 (216)
T KOG0098|consen 72 ---TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKE------EGEAFAREHG 142 (216)
T ss_pred ---HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHH------HHHHHHHHcC
Confidence 445899999999999999988887765 66666654 5668899999999876654432 2456666678
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..++++||+++.||++.|......
T Consensus 143 LifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHHHH
Confidence 899999999999999999877644
No 91
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.81 E-value=3.3e-19 Score=173.17 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=109.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...||+++|.++||||||+++++... +.. .+..|..+.....+.. ++. .+.||||+|..++..+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~~-~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~~~~~----------- 69 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FPE-NYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNV----------- 69 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CCC-ccCCceeeeeEEEEEE-CCEEEEEEEEECCCchhhHhh-----------
Confidence 35799999999999999999999654 332 3333333333334443 333 7899999998655332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchh------hHHHHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQ------TATYYEQDVREK 517 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~------~~~~~~~~l~~~ 517 (666)
...+++.+|++|+|+|+++..+.+.. .|+..+.+. +.|+|||+||+||.+..... ....+...-.+.
T Consensus 70 ---~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 70 ---RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred ---hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 12378999999999999998887774 476777654 68999999999985420000 000001111333
Q ss_pred HhcCCC-CCEEEEeCccCCC-HHHHHHHHHHH
Q 005979 518 LRALDW-APIVYSTAIAGQS-VDKIIVAAEMV 547 (666)
Q Consensus 518 l~~~~~-~~ii~vSAk~g~g-v~~L~~~i~~~ 547 (666)
++...+ +++++|||++|.| |+++|..+.++
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 444445 4899999999998 99999998864
No 92
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=4.3e-19 Score=185.76 Aligned_cols=163 Identities=33% Similarity=0.516 Sum_probs=128.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
..|+++|.||||||||+|+|+|.+.+.+++.+.+|++...+....++.++.++||||+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----------------- 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----------------- 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh-----------------
Confidence 469999999999999999999999888999999999888776666668999999999865221
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc-c-hh
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-G-IM 321 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~-~-~~ 321 (666)
.+...+...+...+..+|+++||+|+..+++..+..+.+.+.. .+.|+++|+||+|+... . ..
T Consensus 69 -------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~ 133 (292)
T PRK00089 69 -------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELL 133 (292)
T ss_pred -------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHH
Confidence 1122344566778899999999999998888888888888775 47899999999999732 2 11
Q ss_pred hHHHHH-h-cCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 322 QVSEFW-S-LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 322 ~~~~~~-~-~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.....+ . .++ .++++||++|.|+++|++.|.+.+++.
T Consensus 134 ~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 134 PLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 222222 2 233 689999999999999999999988753
No 93
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=8e-19 Score=173.35 Aligned_cols=165 Identities=25% Similarity=0.342 Sum_probs=110.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.. +.++..+|+|++..... . + .+.+|||||+.....+.+ ...+.+ ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~--~-~--~~~l~Dt~G~~~~~~~~~--~~~~~~-~~ 78 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYD--W-G--DFILTDLPGFGFMSGVPK--EVQEKI-KD 78 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEe--e-c--ceEEEeCCccccccccCH--HHHHHH-HH
Confidence 45799999999999999999999875 56778889998865432 2 2 689999999743222110 001111 11
Q ss_pred HHHH----HHhhCCeEEEEeeccccC-----------CHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHH
Q 005979 450 RAFR----AIRRSDVVALVIEAMACI-----------TEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (666)
Q Consensus 450 ~~~~----~i~~advvllViDa~~~~-----------t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l 514 (666)
.... .+..++++++|+|++... ...+..++..+...++|+++|+||+|+.... .. ...++
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~----~~~~~ 153 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DE----VLDEI 153 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HH----HHHHH
Confidence 1222 334578999999986421 2244566777777799999999999996532 11 12233
Q ss_pred HHHHhcC-C----CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 515 REKLRAL-D----WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 515 ~~~l~~~-~----~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
.+.+... . +.+++++||++| |+++++++|.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 3333211 1 136899999999 99999999986543
No 94
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.81 E-value=3e-19 Score=170.00 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=105.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++++..... ..+.+|+.+.....+.. ++. .+.||||||+.++..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFASMR------------ 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEE-CCEEEEEEEEECCCcccccchH------------
Confidence 58999999999999999999965422 22333443333334443 343 57899999987764332
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|+++..+.++.. |+..+.+ .++|+++|+||+|+.........+ .. .+....+.
T Consensus 67 --~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~--~~----~~~~~~~~ 138 (163)
T cd04176 67 --DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE--GR----ALAEEWGC 138 (163)
T ss_pred --HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH--HH----HHHHHhCC
Confidence 23678999999999999876655543 5555554 369999999999986533222111 11 22222246
Q ss_pred CEEEEeCccCCCHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++||++|.|++++|..+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHH
Confidence 8999999999999999998875
No 95
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=5.5e-19 Score=171.73 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=107.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||++++++.. +.....+++..+.....+.. ++ ..+.+|||+|..++..+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~------------- 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINM------------- 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHh-------------
Confidence 489999999999999999998654 33334444444554444544 44 37899999998654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.||++++|+|+++..+.++.. |+..+... ..| |+|+||+|+.........+...+. .+.++...+++
T Consensus 66 -~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-~~~~a~~~~~~ 142 (182)
T cd04128 66 -LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQ-ARKYAKAMKAP 142 (182)
T ss_pred -hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHH-HHHHHHHcCCE
Confidence 223789999999999999877766653 55666552 345 688999999632111111111122 22233334578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|..+.+.+
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997654
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=8.4e-19 Score=169.80 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=108.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-----------CCceEEEEEcCCCccccccccC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-----------EGQKFRLIDTAGIRKRAAIASS 439 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-----------~~~~~~liDTpG~~~~~~~~~~ 439 (666)
.+||+++|.+|||||||++++++.. +.....++++.+.....+... ....+.||||||+.++..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 78 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS---- 78 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH----
Confidence 4799999999999999999998654 333334444444443333321 124789999999754322
Q ss_pred CchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHH
Q 005979 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (666)
Q Consensus 440 ~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l 514 (666)
....+++.+|++++|+|+++..+.++.. |+..+... +.|+++|+||+|+.+.+.... + ..
T Consensus 79 ----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~-~----~~ 143 (180)
T cd04127 79 ----------LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE-E----QA 143 (180)
T ss_pred ----------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH-H----HH
Confidence 2344789999999999999876666654 55555543 578999999999975433221 1 11
Q ss_pred HHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 515 REKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 515 ~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+.+....+++++++||++|.|++++|+.|.+..
T Consensus 144 -~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 144 -KALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222222357899999999999999999997643
No 97
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.81 E-value=3.9e-19 Score=184.07 Aligned_cols=162 Identities=24% Similarity=0.335 Sum_probs=122.6
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh-HHHHH-hcCCCCeeecccC
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAIS 340 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-~~~~~-~~~~~~i~iSa~~ 340 (666)
.+++...++.+|+||+|+|++.+++..+..+.+.+ .++|+++|+||+|+.+..... ...++ ..+..++++||.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 87 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKK 87 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 36677889999999999999988877766676666 268999999999996543221 12222 3456789999999
Q ss_pred CCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc
Q 005979 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 341 g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
+.|+.+|++.|.+.++................+++++|.||||||||+|+|++.....+++.||+|+......+ +.
T Consensus 88 ~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~ 163 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SD 163 (276)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CC
Confidence 99999999999888764321100000012357899999999999999999999888889999999998764433 23
Q ss_pred eEEEEEcCCCcc
Q 005979 421 KFRLIDTAGIRK 432 (666)
Q Consensus 421 ~~~liDTpG~~~ 432 (666)
.+.|+||||+..
T Consensus 164 ~~~l~DtPG~~~ 175 (276)
T TIGR03596 164 GLELLDTPGILW 175 (276)
T ss_pred CEEEEECCCccc
Confidence 689999999954
No 98
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=4.4e-19 Score=169.59 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=104.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCccee-eeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTR-DAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~-d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
+||+++|.+|||||||++++++.. + ...+++|+. +.....+.. ++ ..+.+|||||+.++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~------------- 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-F-MADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRA------------- 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHH-------------
Confidence 689999999999999999999664 2 233333332 222222332 33 3789999999755422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++|+|+|++++.+.+... |+..+... +.|+++|+||+|+...+.... + ...+ +....+.
T Consensus 67 -~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~-~----~~~~-~~~~~~~ 139 (166)
T cd04122 67 -VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTY-E----EAKQ-FADENGL 139 (166)
T ss_pred -HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCH-H----HHHH-HHHHcCC
Confidence 1234789999999999999876655543 44544432 578999999999975433221 1 1111 2222357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|..+.+.
T Consensus 140 ~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 140 LFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999888754
No 99
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=3.4e-19 Score=174.32 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=107.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++|++... .....+..... ....+.. ++ ..+.||||||..++..++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~-~~~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~----------- 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF-PQVYEPTVFEN-YVHDIFV-DGLHIELSLWDTAGQEEFDRLRS----------- 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCccCCcceee-eEEEEEE-CCEEEEEEEEECCCChhcccccc-----------
Confidence 3899999999999999999997642 22222322222 2222332 33 4789999999876544321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhH-HH-----H-HHHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-TY-----Y-EQDVREKL 518 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~-~~-----~-~~~l~~~l 518 (666)
.+++.+|++++|+|+++..+.+.. .|+..+... +.|+|+|+||+|+......... .. + .++..+..
T Consensus 67 ---~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 67 ---LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ---ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 267899999999999988777655 366666654 6899999999999654321100 00 0 11112222
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
...+.++++++||++|.||+++|.++.+..
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 233447899999999999999999998654
No 100
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.81 E-value=2.4e-19 Score=169.61 Aligned_cols=151 Identities=25% Similarity=0.356 Sum_probs=110.7
Q ss_pred cEEEEEecCCCCCCHHHHHHH-HHHHhhcCCCcEEEEeccCCCCccchhhH-H-HHHhc-CCCCeeecccCCCChHHHHH
Q 005979 274 CVIIFLVDGQAGLTAADEEIA-DWLRKNYMDKFIILAVNKCESPRKGIMQV-S-EFWSL-GFSPLPISAISGTGTGELLD 349 (666)
Q Consensus 274 d~il~VvD~~~~~~~~d~~i~-~~l~~~~~~~p~ilv~NK~D~~~~~~~~~-~-~~~~~-~~~~i~iSa~~g~Gi~eLl~ 349 (666)
|++|+|+|++.+....+..+. ..+.. .++|+++|+||+|+........ . .+... +..++++||.+|.|+.+|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999887766655555 34444 5799999999999975432211 1 23233 33679999999999999999
Q ss_pred HHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCC
Q 005979 350 LVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (666)
Q Consensus 350 ~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG 429 (666)
.|.+.+.................+++++|.||+|||||+|+|++.....+++.+|||++.....+ +..+.|+||||
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 98776542210000001123457899999999999999999999887889999999999876543 34699999999
Q ss_pred C
Q 005979 430 I 430 (666)
Q Consensus 430 ~ 430 (666)
+
T Consensus 155 ~ 155 (155)
T cd01849 155 I 155 (155)
T ss_pred C
Confidence 5
No 101
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=6.3e-19 Score=169.43 Aligned_cols=158 Identities=21% Similarity=0.172 Sum_probs=107.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
||+++|.+|||||||++++++.. +.....+.+..+.....+.. +| ..+.+|||||+.++..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCI-------------- 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhh--------------
Confidence 79999999999999999999764 33334454445554444443 33 47899999998654221
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHhC----CcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG----KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~~----~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|+++..+... ..|+..+.+.. .|+++|+||+|+.+.......+ +.. ..+....+.+
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~---~~~-~~~~~~~~~~ 141 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALME---QDA-IKLAAEMQAE 141 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccH---HHH-HHHHHHcCCe
Confidence 2346899999999999987544433 34666665432 4689999999986543211111 111 1222222468
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++||++|.|++++|..|.+.+.+
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877643
No 102
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=4.6e-19 Score=176.47 Aligned_cols=158 Identities=20% Similarity=0.124 Sum_probs=110.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++|++... .....++++.+.....+...++ ..+.+|||||+.++..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~-~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------------- 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF-AEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-------------- 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH--------------
Confidence 6999999999999999999997653 2233355555655555544334 3789999999865422
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++|+|+|+++..+.++.. |+..+.+. ..|++||+||+|+......... .. +.+....+.
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~--~~----~~~~~~~~~ 141 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTRE--EA----EKLAKDLGM 141 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHH--HH----HHHHHHhCC
Confidence 1234789999999999999876655543 55555442 4678999999999754322211 11 122222348
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|++++|+.|.+...+
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999876543
No 103
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.2e-19 Score=195.28 Aligned_cols=164 Identities=23% Similarity=0.374 Sum_probs=131.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
.+|+++|.||||||||+|+|+|.+ ..++++||+|.+..++.+.+ .++.+.++|+||........ .++. +.+-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S-----~DE~-Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS-----EDEK-VARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC-----chHH-HHHH
Confidence 579999999999999999999885 78999999999999999986 78889999999998765543 1222 2222
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
.-.-..+|+++-|+|+++- +.++.+.-++.+.|+|+|+++|++|..+.+..... .+.+.+.-++|++++||
T Consensus 76 ~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID-------~~~L~~~LGvPVv~tvA 146 (653)
T COG0370 76 FLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID-------IEKLSKLLGVPVVPTVA 146 (653)
T ss_pred HHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc-------HHHHHHHhCCCEEEEEe
Confidence 2123567999999999975 67788888899999999999999998664433221 23445555899999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcc
Q 005979 532 IAGQSVDKIIVAAEMVDKERS 552 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~~~ 552 (666)
++|.|++++++++.+..+...
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999988765543
No 104
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.81 E-value=6.6e-19 Score=168.89 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=107.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...||+++|.+|||||||++++++.. +.....+..+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~----------- 70 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSL----------- 70 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHh-----------
Confidence 35799999999999999999999654 33334444445544444443 33 36789999998554222
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
...+++.+|++++|+|+++..+.+... |...+.. .+.|+++|+||+|+... ... .+++.+.+.
T Consensus 71 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~-----~~~~~~~~~ 141 (170)
T cd04116 71 ---RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVS-----TEEAQAWCR 141 (170)
T ss_pred ---HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccC-----HHHHHHHHH
Confidence 234779999999999998876555543 4444433 25799999999998632 211 112233333
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
..+..+++++||++|.|+.++|..+.+
T Consensus 142 ~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 142 ENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 444468999999999999999998874
No 105
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.2e-19 Score=193.38 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=122.8
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
+....|+|||.||||||||+|+|++.+ ..++++|++|++.+.+.+.+.+..+.++||||+........
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~----------- 224 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK----------- 224 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh-----------
Confidence 345789999999999999999999986 56789999999999999999999999999999964221111
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC------CCHHH---HHHHHHHHh--------hcCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------LTAAD---EEIADWLRK--------NYMD 303 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~------~~~~d---~~i~~~l~~--------~~~~ 303 (666)
-+...+++.+++||+++||+|++.. +...+ .++..+... ...+
T Consensus 225 --------------------gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 225 --------------------GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred --------------------HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 1234567788999999999998641 11111 123233220 1247
Q ss_pred CcEEEEeccCCCCccchhh-H--HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 304 KFIILAVNKCESPRKGIMQ-V--SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~-~--~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+|+|+|+||+|+....... . ..+...++++++|||.++.|+.+|+.+|.+.+...
T Consensus 285 kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 285 RPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999987533211 1 12334577899999999999999999999888754
No 106
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=6.1e-19 Score=170.77 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=108.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++.. +.....| |..+.....+.. ++ ..+.+|||||..++..+.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~~~~~~------------ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVP-TVFENYTASFEI-DEQRIELSLWDTSGSPYYDNVR------------ 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCC-ceEEEEEEEEEE-CCEEEEEEEEECCCchhhhhcc------------
Confidence 589999999999999999999664 3333333 333333334443 33 378999999986654322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchh------hHHHHHHHHHHHHh
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQ------TATYYEQDVREKLR 519 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~------~~~~~~~~l~~~l~ 519 (666)
..+++.+|++|+|+|+++..+.++. .|+..+.+. ..|+|+|+||+||.+..... ....+...-.+.++
T Consensus 67 --~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 67 --PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred --hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 2368999999999999998888773 577777664 68999999999995420000 00001111223344
Q ss_pred cCCCC-CEEEEeCccCCC-HHHHHHHHHHH
Q 005979 520 ALDWA-PIVYSTAIAGQS-VDKIIVAAEMV 547 (666)
Q Consensus 520 ~~~~~-~ii~vSAk~g~g-v~~L~~~i~~~ 547 (666)
...++ ++++|||++|.| |+++|..+.++
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 44454 799999999995 99999998874
No 107
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=1.8e-18 Score=165.10 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=106.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|+|||||++++++.. +.....+..+.+.....+.. ++ ..+.+|||||+.++.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-------------- 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFR-------------- 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHH--------------
Confidence 4799999999999999999998654 22222233333443334443 44 378999999975432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
.....+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+...+.... +............
T Consensus 67 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~ 141 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLF-----EEACTLAEKNGML 141 (165)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH-----HHHHHHHHHcCCc
Confidence 1234567899999999999987665553 466666543 689999999999975433221 1122222233335
Q ss_pred CEEEEeCccCCCHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++||++|.|++++|..+.+
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 108
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=1.9e-18 Score=169.65 Aligned_cols=170 Identities=25% Similarity=0.295 Sum_probs=119.4
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH-
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~- 446 (666)
+..++|+++|.+|+|||||+|+|++.. ...+++.+|+|++.....+ +..+.||||||+.....-. ...+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~---~~~~~~~ 94 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSK---EEKEKWQ 94 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCc---hHHHHHH
Confidence 356899999999999999999999864 5567778888887543322 4689999999975421100 001111
Q ss_pred -HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 447 -SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 447 -~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
.....+.....++++++|+|++.+.+..+..+.+++...++|+++++||+|+...... +.....+.+.+... ..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~i~~~l~~~-~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGER---KKQLKKVRKALKFG-DDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHH---HHHHHHHHHHHHhc-CCc
Confidence 1112222233457899999999888887777778888889999999999999754221 22223344444333 578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++++.|.+..+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 109
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.80 E-value=3.5e-19 Score=170.88 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=100.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+++|...... ...|+++.+.. .+.. ++..+.+|||||+.++..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~-------------- 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVE--TVTY-KNVKFNVWDVGGQDKIRPL-------------- 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceE--EEEE-CCEEEEEEECCCCHHHHHH--------------
Confidence 479999999999999999999865432 23343333332 2332 5678999999998654221
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh--cC--
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--AL-- 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~--~~-- 521 (666)
...+++.||++|+|+|+++..+..+. .++..+.. .++|++||+||+|+..... .+ ++.+.+. ..
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~----~i~~~~~~~~~~~ 142 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK---PH----EIQEKLGLTRIRD 142 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC---HH----HHHHHcCCCccCC
Confidence 23478999999999999986444332 23333322 3689999999999864211 11 2222221 11
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
...+++++||++|.||+++|++|.
T Consensus 143 ~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 143 RNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CcEEEEEeeCCCCCChHHHHHHHh
Confidence 224689999999999999999885
No 110
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=9.7e-19 Score=170.16 Aligned_cols=157 Identities=21% Similarity=0.261 Sum_probs=116.4
Q ss_pred eEEEecCCCCChhHHHHHHhccCccccc---------------CCCcceeeeEeEEEecCCCceEEEEEcCCCccccccc
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIA 437 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~---------------~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 437 (666)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.. .+..+.+|||||+.++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 4899999999999999999976543221 2235566655555553 5678999999997543
Q ss_pred cCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHH
Q 005979 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (666)
Q Consensus 438 ~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~ 517 (666)
......+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...... ......+.+.
T Consensus 76 ----------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~---~~~~~~~~~~ 142 (189)
T cd00881 76 ----------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL---EEVLREIKEL 142 (189)
T ss_pred ----------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH---HHHHHHHHHH
Confidence 123455778999999999999988888888888888789999999999999763221 1122333333
Q ss_pred Hhc-------------CCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 518 LRA-------------LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 518 l~~-------------~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+.. ....+++++||++|.|+++++..+...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 333 235889999999999999999988754
No 111
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=1.5e-18 Score=165.35 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=105.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|||||||+|+|++.. +.....+.++.+.....+... ....+.+|||||..++. ..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------~~ 65 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR-FVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL--------------EV 65 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH--------------HH
Confidence 489999999999999999999765 333444555555433334331 23478999999975432 12
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH--------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~--------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
...+++.+|++|+|+|++++.+.++. .|+..+.+ .+.|+++|+||+|+.+...... + ..... ...
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~~~-~~~ 139 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE-D----EGRLW-AES 139 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH-H----HHHHH-HHH
Confidence 23467899999999999986554443 35555543 2478999999999964322221 1 11111 222
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
.+.+++++||++|.|++++|+.|.+.
T Consensus 140 ~~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 140 KGFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998754
No 112
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=8.1e-19 Score=168.01 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=113.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe-eEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.|+++|++|||||||+|+|.+.. ..++..++.|.+...+...+.+. ++.+|||||+.......+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG------------- 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-------------
Confidence 58999999999999999999876 46777888898888888877776 9999999998642211111
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-CCHHH-HHHHHHHHhhc---CCCcEEEEeccCCCCcc
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAAD-EEIADWLRKNY---MDKFIILAVNKCESPRK 318 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~-~~~~d-~~i~~~l~~~~---~~~p~ilv~NK~D~~~~ 318 (666)
+...+.+.+..+|++++|+|++.+ -.... ..+.+.+.... .++|+++|+||+|+...
T Consensus 68 ------------------~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 68 ------------------LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred ------------------chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 123445567789999999999875 22222 23444444321 36899999999998654
Q ss_pred chhh--HHHHHhc--CCCCeeecccCCCChHHHHHHHHHH
Q 005979 319 GIMQ--VSEFWSL--GFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 319 ~~~~--~~~~~~~--~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.... ...+... +.+++++||++|.|+.++++.|.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 130 EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 3221 1222332 4578999999999999999998764
No 113
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.80 E-value=7.6e-19 Score=167.25 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=108.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+|+++|.+|||||||++++++.. +.....++...+.....+.. ++ ..+.+|||||..++..+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~------------- 65 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTI------------- 65 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhh-------------
Confidence 379999999999999999999664 33344555555554445554 33 36889999998654221
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|+++.-+.++.. |+..+... +.|+++|+||+|+...+.... . ....+....+++
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--~----~~~~~~~~~~~~ 138 (161)
T cd04117 66 -TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD--E----QGNKLAKEYGMD 138 (161)
T ss_pred -HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--H----HHHHHHHHcCCE
Confidence 234678999999999999876655543 55555443 579999999999965443221 1 122223333478
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.||+++|..|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999753
No 114
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=8.3e-19 Score=167.90 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=105.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|||||||+++++... +.....+....+.....+.. .....+.+|||||+.++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR------------- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-------------
Confidence 489999999999999999998543 22222222222332222322 123478999999987653321
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
..+++.+|++|+|+|++++.+.+... |++.+.+. ++|+++|+||+|+.... ... + ...+......+++
T Consensus 67 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~~~-~------~~~~~~~~~~~~~ 137 (166)
T cd00877 67 -DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK-VKA-K------QITFHRKKNLQYY 137 (166)
T ss_pred -HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc-CCH-H------HHHHHHHcCCEEE
Confidence 12568999999999999876666554 55666554 69999999999996322 111 1 1122334567899
Q ss_pred EEeCccCCCHHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++||++|.|++++|..|.+.+
T Consensus 138 e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 138 EISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEeCCCCCChHHHHHHHHHHH
Confidence 999999999999999998654
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=7.5e-19 Score=171.92 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=105.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.+||+++|.+|||||||++++++... ...+..|+.+.....+...+ ...+.+|||||+.++..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l------------- 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM------------- 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhh-------------
Confidence 47999999999999999999997542 22233333333333343322 236789999998765432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.++.. |+..+.+. +.|+++|+||+|+.........+ ...+ ....+.
T Consensus 70 -~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~--~~~~----~~~~~~ 142 (189)
T PTZ00369 70 -RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGE--GQEL----AKSFGI 142 (189)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH--HHHH----HHHhCC
Confidence 223788999999999999876655544 44555442 67999999999986533222111 1111 122246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|+.++|.++.+..
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997554
No 116
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=4.6e-19 Score=172.49 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=102.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec--CCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|.+|||||||++++++.... ...|.++.+.....+.. ..+..+.+|||||+.++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP------------- 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-------------
Confidence 468999999999999999999876532 23333322222222321 1345899999999855422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHH----HhCCcEEEEEecccCCCCcchhhHHHHHHHHH-HHHhcCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALD 522 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~----~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~-~~l~~~~ 522 (666)
....+++.+|++++|+|+++..+.++.. ++..+. ..++|+++|+||+|+...... +.....+. ..+....
T Consensus 68 -~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~ 143 (183)
T cd04152 68 -LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLALHELSAST 143 (183)
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHhCccccCCCC
Confidence 1234678999999999998764433322 333332 347999999999998642111 11111110 0011112
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+++++||++|.|++++++.|.+..
T Consensus 144 ~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ceEEEEeecccCCCHHHHHHHHHHHH
Confidence 35689999999999999999998665
No 117
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.2e-18 Score=188.49 Aligned_cols=164 Identities=27% Similarity=0.352 Sum_probs=122.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+.|+|||.||||||||+|+|++.+ +.++++|++|..+..+.+.+. +..+.++||||+........
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----------- 224 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----------- 224 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc-----------
Confidence 35689999999999999999999987 567899999999999988887 78999999999965222111
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC--CCH-H-HHHHHHHHHhh---cCCCcEEEEeccC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTA-A-DEEIADWLRKN---YMDKFIILAVNKC 313 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~--~~~-~-d~~i~~~l~~~---~~~~p~ilv~NK~ 313 (666)
-+...+.+.++++++++||+|++.. ..+ . ...+.+.|... ..++|+++|+||+
T Consensus 225 --------------------gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 225 --------------------GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred --------------------hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 1235567888999999999998642 122 2 23445555442 2478999999999
Q ss_pred CCCccchhhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 314 ESPRKGIMQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 314 D~~~~~~~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
|+.... .....+. .++.+++++||.++.|+++|++.|.+.+.+.
T Consensus 285 DL~~~~-e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEAE-ENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCCH-HHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 975332 1222222 2346789999999999999999998887643
No 118
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.80 E-value=1.1e-18 Score=165.31 Aligned_cols=149 Identities=27% Similarity=0.345 Sum_probs=113.3
Q ss_pred HHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHH-HHH-hcCCCCeeecccCCCC
Q 005979 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFW-SLGFSPLPISAISGTG 343 (666)
Q Consensus 266 ~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~-~~~-~~~~~~i~iSa~~g~G 343 (666)
....++++|++++|+|++.+....+..+.+++.. .++|+++|+||+|+......... .+. ..+.+++++||++|.|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~g 83 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLG 83 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 3345567999999999988766666667666654 47899999999998653222111 122 2355789999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEE
Q 005979 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFR 423 (666)
Q Consensus 344 i~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~ 423 (666)
+++|++.|.+.++.. ....+++++|.+|+|||||+|++.+.....+++.+|+|++... +. -+..+.
T Consensus 84 i~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~ 149 (156)
T cd01859 84 TKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VK--ITSKIY 149 (156)
T ss_pred HHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EE--cCCCEE
Confidence 999999998887632 2346899999999999999999998777778889998876532 22 234799
Q ss_pred EEEcCCC
Q 005979 424 LIDTAGI 430 (666)
Q Consensus 424 liDTpG~ 430 (666)
+|||||+
T Consensus 150 ~~DtpGi 156 (156)
T cd01859 150 LLDTPGV 156 (156)
T ss_pred EEECcCC
Confidence 9999995
No 119
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=4.5e-19 Score=195.08 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=118.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccccc------------------------------CCCcceeeeEeEEEecCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~------------------------------~~~gtT~d~~~~~~~~~~~ 419 (666)
..++|+++|++|+|||||+++|+........ ..+|+|+|.....+.. ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 3578999999999999999999954433221 1579999999988874 78
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc--cCCHHHHHHHHHHHHhCC-cEEEEEecc
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA--CITEQDCRIAERIEQEGK-GCLIVVNKW 496 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~--~~t~~d~~i~~~i~~~~~-pvIlv~NK~ 496 (666)
..+.||||||+.++.. .+...++.+|++|+|+|+++ ++..++..++..+...++ |+++|+||+
T Consensus 84 ~~i~liDtpG~~~~~~--------------~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 84 YYFTIVDCPGHRDFVK--------------NMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred eEEEEEECCCcccchh--------------hHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 8999999999866421 23345688999999999998 777777777777777775 699999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHHH
Q 005979 497 DTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIV 542 (666)
Q Consensus 497 Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~~ 542 (666)
|+.... ........+++.+.+...+ ..+++++||++|.|++++..
T Consensus 150 Dl~~~~-~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 150 DAVNYD-EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cccccc-HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 997522 2223334455555554433 36899999999999988664
No 120
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.80 E-value=7.3e-19 Score=178.71 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=109.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++|++.. +. ..+.+|+.+.....+.. ++ ..+.||||+|..++..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~-f~-~~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~------------- 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR-FE-EQYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPAM------------- 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC-CC-CCCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhhHH-------------
Confidence 479999999999999999999654 22 23444555555445544 44 36789999998654221
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH------------hCCcEEEEEecccCCCCcchhhHHHHHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~------------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~ 516 (666)
...++..+|++|+|||+++..+.++.. |+.++.+ .++|+|+|+||+|+...+... .+++.+
T Consensus 65 -~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~-----~~ei~~ 138 (247)
T cd04143 65 -RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ-----RDEVEQ 138 (247)
T ss_pred -HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC-----HHHHHH
Confidence 122578999999999999876665543 5566643 268999999999996533322 122333
Q ss_pred HHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 517 ~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
.+.....++++++||++|.|++++|+.|....
T Consensus 139 ~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 139 LVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 33333457899999999999999999998754
No 121
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.80 E-value=9.9e-19 Score=168.23 Aligned_cols=159 Identities=26% Similarity=0.297 Sum_probs=118.2
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hHHHHHh-cCCCCeeecccC
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWS-LGFSPLPISAIS 340 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~-~~~~~i~iSa~~ 340 (666)
.++....++++|++++|+|++.+....+..+...+ .++|+++|+||+|+...... ...+++. .+..++.+||.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 35667889999999999999887766555555544 36799999999999754322 1223333 344679999999
Q ss_pred CCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc
Q 005979 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 341 g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
+.|+++|.+.+...++....... .......++++++|.+|+|||||+|+|++.....+++.+|+|++.....+. .
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~ 160 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKA-KGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----P 160 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhhh-cccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----C
Confidence 99999999999887753221000 011233468999999999999999999988777888999999987664442 4
Q ss_pred eEEEEEcCCC
Q 005979 421 KFRLIDTAGI 430 (666)
Q Consensus 421 ~~~liDTpG~ 430 (666)
.+.+|||||+
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999997
No 122
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.80 E-value=1e-18 Score=174.39 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=106.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
+||+++|.+|||||||+++|++.... ...+.+..+..... .....+.||||||+.++..+ .
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~~~~---~~~~~l~iwDt~G~e~~~~l--------------~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFYLKQ---WGPYNISIWDTAGREQFHGL--------------G 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEEEEE---eeEEEEEEEeCCCcccchhh--------------H
Confidence 48999999999999999999976532 23333333332222 23457899999998765332 1
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCC-------------------CcchhhHH
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIP-------------------NKNQQTAT 508 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~-------------------~~~~~~~~ 508 (666)
..+++.+|++|+|||+++..+.++.. ++..+.+ .+.|+|||+||+||.. .+.... +
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~-~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTL-E 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCH-H
Confidence 23688999999999999887777664 4444443 3589999999999965 111111 1
Q ss_pred HHHHHHHHHHh----------cCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 509 YYEQDVREKLR----------ALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 509 ~~~~~l~~~l~----------~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+ ...+.+.+. ...++++++|||++|.||+++|..+.+...
T Consensus 141 e-~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 141 D-AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred H-HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 111222211 122378999999999999999999986643
No 123
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.80 E-value=8.2e-19 Score=182.57 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=122.3
Q ss_pred HHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hHHHHH-hcCCCCeeecccCC
Q 005979 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (666)
Q Consensus 264 ~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~~~-~~~~~~i~iSa~~g 341 (666)
++..+.+..+|+||+|+|++.+++..+..+.+.+. ++|+++|+||+|+.+.... ....++ ..+..++++||.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~ 91 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKG 91 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 56778899999999999999887776666666552 6899999999998654221 222223 34567899999999
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCce
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~ 421 (666)
.|+.+|++.|.+.++..........-.....+++++|.||||||||+|+|++.....+++.||+|++.....+ +..
T Consensus 92 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 167 (287)
T PRK09563 92 QGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKG 167 (287)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCc
Confidence 9999999999888765321100000112457899999999999999999999888899999999999754332 346
Q ss_pred EEEEEcCCCccc
Q 005979 422 FRLIDTAGIRKR 433 (666)
Q Consensus 422 ~~liDTpG~~~~ 433 (666)
+.||||||+...
T Consensus 168 ~~l~DtPGi~~~ 179 (287)
T PRK09563 168 LELLDTPGILWP 179 (287)
T ss_pred EEEEECCCcCCC
Confidence 899999999653
No 124
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=8.8e-19 Score=175.82 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=109.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|.+|||||||+++|++.. +.....|++..+ ....+.. ++ ..+.||||||..++..+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~-~~~~i~~-~~~~v~l~iwDTaG~e~~~~~------------ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFEN-YTAGLET-EEQRVELSLWDTSGSPYYDNV------------ 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeee-eEEEEEE-CCEEEEEEEEeCCCchhhHHH------------
Confidence 4699999999999999999999654 333333433333 3333443 33 37899999998654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchh------hHHHHHHHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQ------TATYYEQDVREKL 518 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~------~~~~~~~~l~~~l 518 (666)
...++++||++|+|||+++..+.+.. .|+..+.+. +.|+|||+||+||....... ....+...-.+.+
T Consensus 78 --~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 78 --RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred --HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 22378999999999999998877763 577777653 68999999999985321000 0000111112344
Q ss_pred hcCCCC-CEEEEeCccCC-CHHHHHHHHHHHH
Q 005979 519 RALDWA-PIVYSTAIAGQ-SVDKIIVAAEMVD 548 (666)
Q Consensus 519 ~~~~~~-~ii~vSAk~g~-gv~~L~~~i~~~~ 548 (666)
+...++ ++++|||++|. ||+++|..+.+..
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 444455 69999999998 8999999988654
No 125
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.80 E-value=7.5e-19 Score=163.49 Aligned_cols=135 Identities=29% Similarity=0.383 Sum_probs=108.2
Q ss_pred HHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hHHH-HHhcCCCCeeecccCC
Q 005979 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSE-FWSLGFSPLPISAISG 341 (666)
Q Consensus 264 ~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~-~~~~~~~~i~iSa~~g 341 (666)
+++.+++.++|++++|+|++.+....+..+.+++.....++|+++|+||+|+..+... .... +...+..++++||.+|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 4677889999999999999998887777888888763347899999999998654322 1222 3345668899999987
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCce
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~ 421 (666)
.+ +++++|.+|+|||||+|+|++.....++..+|+|++.....+ + ..
T Consensus 83 ~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~ 129 (141)
T cd01857 83 NA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---T-PT 129 (141)
T ss_pred Cc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe---C-CC
Confidence 65 689999999999999999999887788899999998765443 2 26
Q ss_pred EEEEEcCCCc
Q 005979 422 FRLIDTAGIR 431 (666)
Q Consensus 422 ~~liDTpG~~ 431 (666)
+.||||||+.
T Consensus 130 ~~i~DtpG~~ 139 (141)
T cd01857 130 ITLCDCPGLV 139 (141)
T ss_pred EEEEECCCcC
Confidence 8999999974
No 126
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.1e-18 Score=162.13 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=124.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+-|+++|++|||||||+|+|+++. -+.++..||.|+-.....+. + .+.++|.||+.-- .+.+ ...+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~-~~~lVDlPGYGyA-kv~k---~~~e~w~ 94 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---D-ELRLVDLPGYGYA-KVPK---EVKEKWK 94 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec---C-cEEEEeCCCcccc-cCCH---HHHHHHH
Confidence 45789999999999999999999965 47899999999987654442 2 3899999998632 2111 1111222
Q ss_pred HHHHHHHh---hCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIR---RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~---~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
.....|++ .-.++++++|+.++....|.++++++...++|+++|+||+|.+..... ......+++.+.......
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCcc
Confidence 22334443 357789999999999999999999999999999999999999874322 122334444444333222
Q ss_pred --EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 --IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 --ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++..|+.++.|+++|...|.+.+.
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhh
Confidence 899999999999999998886654
No 127
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=2.8e-18 Score=162.88 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=106.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC---CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
+||+++|.+|+|||||++++++.. +.....++++.+.....+... .+..+.+|||||+.++..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------- 66 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA------------- 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH-------------
Confidence 489999999999999999999754 333334455555544444432 234799999999754322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|+++..+.+... |+..+.. .+.|+++|+||+|+........ + +. ..+....+.+
T Consensus 67 -~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~-~----~~-~~~~~~~~~~ 139 (162)
T cd04106 67 -ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN-E----EA-EALAKRLQLP 139 (162)
T ss_pred -hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH-H----HH-HHHHHHcCCe
Confidence 1344789999999999998865555543 4444433 2789999999999975433221 1 11 1222223568
Q ss_pred EEEEeCccCCCHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~ 546 (666)
++++||++|.|++++|+.|..
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998864
No 128
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=1.5e-18 Score=183.08 Aligned_cols=163 Identities=28% Similarity=0.357 Sum_probs=121.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...+.|+|||.||||||||+|+|++.+ ..++++|++|.....+.+.+.+ ..+.++||||+........
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~---------- 223 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA---------- 223 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccc----------
Confidence 345789999999999999999999986 5688999999999999988877 8999999999965322111
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC---CCHHH-HHHHHHHHhh---cCCCcEEEEecc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAAD-EEIADWLRKN---YMDKFIILAVNK 312 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~---~~~~d-~~i~~~l~~~---~~~~p~ilv~NK 312 (666)
.+...+.+.+++++++++|+|++.. -...+ ..+.+.|... ..++|+++|+||
T Consensus 224 ---------------------gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 224 ---------------------GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred ---------------------cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 1235667788999999999998753 11122 2333444332 247899999999
Q ss_pred CCCCccchhh-H-HHHH-hcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 313 CESPRKGIMQ-V-SEFW-SLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 313 ~D~~~~~~~~-~-~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
+|+....... . ..+. ..+.+++++||+++.|+++|++.|.+.+
T Consensus 283 ~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9987643211 1 1122 3456899999999999999999998765
No 129
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=2.8e-18 Score=164.41 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=106.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..||+++|.+|||||||++++++.... ....+.++.+.....+...+ ...+.+|||||..++. .
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------~ 68 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR--------------S 68 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH--------------H
Confidence 479999999999999999999976532 22223333333333333322 2378999999974431 1
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++|+|+|++++.+.++.. |+..+... +.|+|+|+||+|+........ + +...... ..+.+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~----~~~~~~~-~~~~~ 142 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY-E----EGEAFAK-EHGLI 142 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH-H----HHHHHHH-HcCCE
Confidence 2345778999999999999866655544 55555543 689999999999975332221 1 1112222 23578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|..+.+..
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999887654
No 130
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=7.8e-19 Score=171.26 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=106.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++|++.. +.....+ ++.+.....+...++. .+.+|||||+.++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~-t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~------------- 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVP-TVFENYVTNIQGPNGKIIELALWDTAGQEEYDRL------------- 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCC-eeeeeeEEEEEecCCcEEEEEEEECCCchhHHHH-------------
Confidence 489999999999999999999764 3333333 3333333334332233 6899999998654221
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++|+|+|+++..+.++.. |+..+.. .++|+|+|+||+|+.........- ......+.....+..+
T Consensus 66 -~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v-~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 66 -RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKV-TPAQAESVAKKQGAFA 143 (187)
T ss_pred -HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCc-CHHHHHHHHHHcCCcE
Confidence 122678999999999999877776653 5555543 368999999999996532110000 0111222222233338
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++|..+.+.+.
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999986654
No 131
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.5e-18 Score=186.83 Aligned_cols=165 Identities=23% Similarity=0.230 Sum_probs=121.5
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
....|+|||+||||||||+|+|++.+ ..++++|++|+....+.+.+.+ ..+.++||||+........
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~----------- 225 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA----------- 225 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh-----------
Confidence 35689999999999999999999987 6889999999999999988875 5699999999975221111
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC----CCCHHHHHHHHHHHhh---cCCCcEEEEeccC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA----GLTAADEEIADWLRKN---YMDKFIILAVNKC 313 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~----~~~~~d~~i~~~l~~~---~~~~p~ilv~NK~ 313 (666)
.+...+.+++.++|++++|+|+.. ........+.+.+... ..++|+++|+||+
T Consensus 226 --------------------~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 226 --------------------GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred --------------------hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 122445678999999999999862 1122223444555442 1368999999999
Q ss_pred CCCccchh-hH-HHHH-hcC--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 314 ESPRKGIM-QV-SEFW-SLG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 314 D~~~~~~~-~~-~~~~-~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
|+...... .. ..+. ..+ ..++++||+++.|+++|++.|.+.+++.
T Consensus 286 Dl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 286 DLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred ccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 98754321 11 1122 223 2689999999999999999999988753
No 132
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=7.9e-19 Score=168.87 Aligned_cols=157 Identities=25% Similarity=0.276 Sum_probs=110.5
Q ss_pred EecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH
Q 005979 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (666)
Q Consensus 376 vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (666)
++|++|||||||+|+|++... .++..+++|+++....+...++..+.+|||||+.+..... .........++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG-------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC-------CCccHHHHHHH
Confidence 589999999999999998764 6778889998887776665228899999999985422110 11112345578
Q ss_pred hhCCeEEEEeeccccC------CHHHHH-HHHHHHH----------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHH
Q 005979 456 RRSDVVALVIEAMACI------TEQDCR-IAERIEQ----------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKL 518 (666)
Q Consensus 456 ~~advvllViDa~~~~------t~~d~~-i~~~i~~----------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l 518 (666)
+.+|++++|+|+++.. +..+.. +...+.. .++|+++|+||+|+........ .. ....
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~---~~---~~~~ 146 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE---EL---VREL 146 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH---HH---HHHH
Confidence 8899999999998763 333333 3333332 3799999999999975432111 10 1223
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
......+++++||++|.|++++++.+..
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 3344678999999999999999998864
No 133
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.79 E-value=4.2e-18 Score=162.13 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=105.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCC--CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
+||+++|.+|||||||+++|.+.. .+.....+++..+.....+...+ ...+.+|||||+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------- 67 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD------------- 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH-------------
Confidence 489999999999999999998542 23333333333444333333322 34899999999744311
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|+++..+..+. .|+..+... ++|+|+|+||+|+.+........ .+.+....+.+
T Consensus 68 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~ 140 (164)
T cd04101 68 -MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ------AQAFAQANQLK 140 (164)
T ss_pred -HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHH------HHHHHHHcCCe
Confidence 123467899999999999886555443 355655554 58999999999996543322111 11222333578
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++|+.+.+.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 141 FFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred EEEEeCCCCCChHHHHHHHHHH
Confidence 9999999999999999998765
No 134
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=1.1e-18 Score=174.80 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=108.5
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...+||+++|.+|||||||+++++... +.....+++..+.....+... ....+.+|||||..++..++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------- 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---------- 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh----------
Confidence 345799999999999999999987543 222222322233332233322 23489999999987654332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++|+|+|+++..+.+... |+..+.+. +.|+++|+||+|+... ... .+ .+ .+....++
T Consensus 80 ----~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~-~~----~~--~~~~~~~~ 147 (219)
T PLN03071 80 ----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AK----QV--TFHRKKNL 147 (219)
T ss_pred ----HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-cCC-HH----HH--HHHHhcCC
Confidence 23678999999999999887666554 55656543 6899999999998532 111 11 11 22233467
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|++++|.+|.+.+.
T Consensus 148 ~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 148 QYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999986543
No 135
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=8.6e-19 Score=167.41 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=100.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcc---cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRT---IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~---~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+|+++|.+|||||||+|+|++.... .......+|.......+.+ ++..+.+|||||+.++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------------- 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRS-------------- 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHH--------------
Confidence 5899999999999999999864311 1111122333333334443 578999999999865322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh--cCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--ALD 522 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~--~~~ 522 (666)
....+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+...... ++..+.+..... ...
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV---EEIKEVFQDKAEEIGRR 142 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH---HHHHHHhccccccccCC
Confidence 233468999999999999875333322 23333332 47999999999998653221 112222221111 113
Q ss_pred CCCEEEEeCccCCCHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
..+++++||++|.|+++++++|.
T Consensus 143 ~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 143 DCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ceEEEEeeCCCCcCHHHHHHHHh
Confidence 46899999999999999999885
No 136
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.79 E-value=2.3e-18 Score=163.31 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=110.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|++|||||||+|+|++... .....++++.+.....+.. ++ ..+.+|||||..++..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~-------------- 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRS-------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHH--------------
Confidence 3799999999999999999997753 4466778888877766654 44 3689999999754321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH-h--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-E--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~-~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|++++.+.++. .|+..+.. . +.|+++|+||+|+........ +. . ..+....+++
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~-~~----~-~~~~~~~~~~ 138 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST-EE----G-EKKAKELNAM 138 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH-HH----H-HHHHHHhCCE
Confidence 234467899999999999886555443 35554433 3 389999999999954332221 11 1 1112223588
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|+++++..|.+.
T Consensus 139 ~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 139 FIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999998753
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=1.8e-18 Score=164.21 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=108.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccc--ccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.|+++|++|||||||+|+|++..... ....+++|.+.......+. +..+.+|||||+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~----------------- 64 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF----------------- 64 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------------
Confidence 58999999999999999999854221 2234577877777667776 788999999998531
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch-
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
...+...+..+|++++|+|++.+...+....+..++.. ..+|+++|+||+|+.....
T Consensus 65 ---------------------~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 65 ---------------------IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ---------------------HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHH
Confidence 12334567889999999999877666665555555442 2349999999999875421
Q ss_pred ----hhHHHHH-h---cCCCCeeecccCCCChHHHHHHHHH
Q 005979 321 ----MQVSEFW-S---LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 321 ----~~~~~~~-~---~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
......+ . .+.+++++||++|.|++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1112222 2 2457999999999999999988753
No 138
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=1.6e-18 Score=167.26 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=105.8
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+.+++... +. ..+..|..+.....+.. ++ ..+.+|||||..++..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FP-GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLR------------ 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CC-CcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhhhhhh------------
Confidence 589999999999999999999653 32 23333334433333433 44 368899999986653322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHHh--CCcEEEEEecccCCCCcch-hhHH-----HH-HHHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNKNQ-QTAT-----YY-EQDVREKL 518 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~~--~~pvIlv~NK~Dl~~~~~~-~~~~-----~~-~~~l~~~l 518 (666)
..+++.+|++|+|+|+++..+.++.. |+..+... +.|+|+|+||+|+.+.+.. .... .+ .++..+..
T Consensus 67 --~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 67 --PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred --hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 23678999999999999877777653 55555543 6899999999999643210 0000 00 11112222
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
...+..+++++||++|.|++++|+.+.+
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 2333458999999999999999998874
No 139
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=1.3e-18 Score=173.95 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=114.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||+++|.+|||||||+++|++.. +.....+++..+.....+.. ++ ..+.||||||..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~------------ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRA------------ 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHH------------
Confidence 45799999999999999999999764 33344455555655555544 33 3889999999855422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.++++|+|+|+++..+.+... |+..+... +.|+++|+||+|+...+.... ...+.+....+
T Consensus 77 --~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~------~~~~~l~~~~~ 148 (216)
T PLN03110 77 --ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE------EDGQALAEKEG 148 (216)
T ss_pred --HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH------HHHHHHHHHcC
Confidence 2234789999999999998876666543 55655543 689999999999965433221 11223333446
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|+.|.....
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999976553
No 140
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=1.2e-18 Score=167.78 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=105.5
Q ss_pred EEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 374 I~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
|+++|.+|||||||++++++.. +.....+ +..+.....+.. ++. .+.+|||||+.++..+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------------- 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYSADVEV-DGKPVELGLWDTAGQEDYDRLR-------------- 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeeeEEEEE-CCEEEEEEEEECCCCcccchhc--------------
Confidence 5899999999999999999764 3333333 333433334443 343 68999999987653322
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHH--------H-HHHHHHHH
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATY--------Y-EQDVREKL 518 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~--------~-~~~l~~~l 518 (666)
..+++.+|++|+|+|+++..+.++. .|+..+... ++|+|+|+||+|+...... .+. + .++..+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST--LRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh--hhhhhcccCCCccHHHHHHHH
Confidence 1267899999999999987666654 366666654 7999999999999653210 000 0 11111222
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
...+..+++++||++|.||+++|+.+.+..
T Consensus 142 ~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 223334899999999999999999987653
No 141
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.79 E-value=1.6e-18 Score=170.97 Aligned_cols=157 Identities=20% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+++|++.. +.....++.+.+.....+.. ++ ..+.||||||+.++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~------------ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRT------------ 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHH------------
Confidence 35799999999999999999999764 32333344444443334433 33 3789999999865422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++++|+|+++..+.++.. |+..+... ..|++||+||+|+.+...... + ...+... ..+.
T Consensus 71 --~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~-~----~~~~~~~-~~~~ 142 (199)
T cd04110 71 --ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET-E----DAYKFAG-QMGI 142 (199)
T ss_pred --HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH-H----HHHHHHH-HcCC
Confidence 2244788999999999999876655543 55555543 589999999999975432221 1 1111222 2347
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.||+++|++|.+..
T Consensus 143 ~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 143 SLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEEEECCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998664
No 142
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.79 E-value=5.6e-19 Score=158.71 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=116.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||.++|.+|||||||+-+|+... +....-..+..|+....+.. +|. ++.||||+|+++|+.+.+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTp--------- 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTP--------- 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCH---------
Confidence 35899999999999999999998443 22122223456666666665 544 789999999999987754
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
.|+|+|.++|+|||++.+.+...+. |++++.-. .+-.++|+||+|...++...+.+ ...++...
T Consensus 79 -----SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE------G~kfAr~h 147 (209)
T KOG0080|consen 79 -----SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE------GLKFARKH 147 (209)
T ss_pred -----hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH------HHHHHHhh
Confidence 3899999999999999987776666 55666554 34567999999986555544433 33455556
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
.+-++++|||+.+||...|+.+..-
T Consensus 148 ~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 148 RCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred CcEEEEcchhhhccHHHHHHHHHHH
Confidence 6789999999999999999887643
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=9.1e-19 Score=162.79 Aligned_cols=140 Identities=21% Similarity=0.184 Sum_probs=94.1
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
||+++|++|||||||+|+|++... .. ..| . .+.+ .+ .+|||||+... ... ......
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~-~~t-~-----~~~~-~~---~~iDt~G~~~~---------~~~-~~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LY-KKT-Q-----AVEY-ND---GAIDTPGEYVE---------NRR-LYSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---cc-ccc-e-----eEEE-cC---eeecCchhhhh---------hHH-HHHHHH
Confidence 799999999999999999997653 11 111 1 1111 12 68999997310 011 122233
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCc
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk 532 (666)
..++++|++++|+|++++.+.++..|... .++|+|+|+||+|+.+.. . ..+ ...+.+...+..+++++||+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~-~-~~~----~~~~~~~~~~~~~~~~~Sa~ 128 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD-V-DIE----RAKELLETAGAEPIFEISSV 128 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc-c-CHH----HHHHHHHHcCCCcEEEEecC
Confidence 46899999999999998877666545443 346999999999996421 1 111 12222333344589999999
Q ss_pred cCCCHHHHHHHHH
Q 005979 533 AGQSVDKIIVAAE 545 (666)
Q Consensus 533 ~g~gv~~L~~~i~ 545 (666)
+|.|++++|+.+.
T Consensus 129 ~~~gi~~l~~~l~ 141 (142)
T TIGR02528 129 DEQGLEALVDYLN 141 (142)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998874
No 144
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.79 E-value=1.7e-18 Score=169.76 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=108.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|||||||+++++... +.....| |..+.....+.. ++ ..+.+|||||+.++..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~l~----------- 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FPKEYIP-TVFDNYSAQTAV-DGRTVSLNLWDTAGQEEYDRLR----------- 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCcCCCC-ceEeeeEEEEEE-CCEEEEEEEEECCCchhhhhhh-----------
Confidence 3699999999999999999999653 3222233 333333333333 33 378999999987654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHH--hCCcEEEEEecccCCCCcchh-hHHH-----HHHHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQ-TATY-----YEQDVREKL 518 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~-~~~~-----~~~~l~~~l 518 (666)
..+++.+|++|+|+|+++..+.+... |...+.. .+.|++||+||.||.+..... .... +...-.+.+
T Consensus 69 ---~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 69 ---TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred ---hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 23679999999999999987777764 5555544 368999999999996432100 0000 001112233
Q ss_pred hcCCC-CCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 519 RALDW-APIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 519 ~~~~~-~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+...+ .+++++||++|.||+++|..+.+..
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 33333 6899999999999999999987543
No 145
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=3.3e-18 Score=163.64 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=104.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|.+|||||||+|+|++.... ..++.+..+ ....... ..+..+.+|||||...+. ..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------~~ 63 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDR--------------AN 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccc-eEeeeeecCCeEEEEEEeCCCchhhh--------------HH
Confidence 38999999999999999999976432 223333222 2222222 134478999999975421 12
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
...+++.+|++++|+|++++.+.++. .|...+... +.|+++|+||+|+.+.......+.....+.+.+.. ..++
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 141 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETC 141 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEE
Confidence 33457899999999999987777663 355656543 68999999999996543321111111112222221 1379
Q ss_pred EEEeCccCCCHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++||++|.|++++|+.+.++.
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEeccccccCHHHHHHHHHHHh
Confidence 9999999999999999988654
No 146
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.79 E-value=1.6e-18 Score=170.01 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=107.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeE-eEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI-DTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~-~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.||+++|.+|||||||+++|++.. +....+.+|..... ...+.. ++. .+.+|||||..++..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~------------ 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAM------------ 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhh------------
Confidence 489999999999999999999764 43333444443322 233443 444 5679999998654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|+++..+.++. .|+..+... +.|+++|+||+|+.........- ....+. .+....+.+
T Consensus 67 --~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v-~~~~~~-~~~~~~~~~ 142 (193)
T cd04118 67 --SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQV-DFHDVQ-DFADEIKAQ 142 (193)
T ss_pred --hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCcc-CHHHHH-HHHHHcCCe
Confidence 12357899999999999887555443 366666654 68999999999986432100000 001111 222233578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|+++||+.+.+.+.
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 147
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.79 E-value=6.2e-18 Score=162.08 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=107.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+|++++.. +.....+..+.+.....+.. ++. .+.+|||||+..+. .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~--------------~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQ--------------S 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHH--------------h
Confidence 489999999999999999999764 33333334444444444443 333 57799999975432 1
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
....+++.+|++|+|+|+.++.+.+... |...+.. .++|+++|+||+|+..+.... .+ .+...+...
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~----~~~~~~~~~ 139 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS-TK----KAQQWCQSN 139 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC-HH----HHHHHHHHc
Confidence 2335789999999999998765544432 3333322 168999999999997432211 11 222333444
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+..+++++||++|.|++++|+.|.+...+
T Consensus 140 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 140 GNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999876443
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=3e-18 Score=161.22 Aligned_cols=155 Identities=35% Similarity=0.447 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|++|+|||||+|+|++...+.+.+.+++|.+.......+.+..+.+|||||+........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-------------- 67 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-------------- 67 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--------------
Confidence 379999999999999999999988777788999999988888888888999999999875322110
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
..........+..+|++++|+|+..+.+..+...... ..++|+++|+||+|+......
T Consensus 68 ----------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 68 ----------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred ----------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--
Confidence 0011234456789999999999998777766555444 257999999999998765432
Q ss_pred HHHHhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 324 ~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.....+.+++++||.++.|+.+|++.|...+
T Consensus 126 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2233455899999999999999999987654
No 149
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.2e-19 Score=156.26 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=122.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||+++|..|||||.|+.++... .+.....+.+..|..-..++. +|. ++++|||+|+.+|+++
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsi----------- 72 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSI----------- 72 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHH-----------
Confidence 3579999999999999999999854 456666666777777777765 443 7899999999887654
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
+..|+|.|+.+++|+|++...++.-+- |++.|... +.--|+|+||+|+.+.++ +.+++.+.+....+
T Consensus 73 ---tqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drre------vp~qigeefs~~qd 143 (213)
T KOG0095|consen 73 ---TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRRE------VPQQIGEEFSEAQD 143 (213)
T ss_pred ---HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhh------hhHHHHHHHHHhhh
Confidence 456899999999999999877766553 77877764 344689999999965432 34556666766667
Q ss_pred CCEEEEeCccCCCHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.-++++||+...||+.||..++-
T Consensus 144 myfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 144 MYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhhcccchhhHHHHHHHHHH
Confidence 77999999999999999998864
No 150
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=1.2e-18 Score=167.96 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=108.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|+|||||++++++.. + ...+.+|+.+.....+.. ++ ..+.+|||||+.++..++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~----------- 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-Y-PTEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRP----------- 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhccccc-----------
Confidence 489999999999999999998654 2 344555666655544443 34 3788999999876544321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHH--hCCcEEEEEecccCCCCcchhh------HHHHHHHHHHHHh
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQT------ATYYEQDVREKLR 519 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~------~~~~~~~l~~~l~ 519 (666)
.+++.+|++|+|+|+++..+.+.. .|+..+.. .++|+++|+||+|+........ ...+.......++
T Consensus 67 ---~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 ---LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred ---cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 267899999999999987766654 46766665 3689999999999864311000 0000111112233
Q ss_pred cCCC-CCEEEEeCccCCCHHHHHHHHH
Q 005979 520 ALDW-APIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 520 ~~~~-~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
...+ .+++++||++|.||+++|+.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3333 4899999999999999999875
No 151
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=8.6e-19 Score=166.34 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=98.8
Q ss_pred eEEEecCCCCChhHHHHHHhccCcc--cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRT--IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~--~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+|+++|.+|||||||+++|++.... ...+..|.+.. .+. .++..+.+|||||..++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~-~~~~~~~l~Dt~G~~~~~~~-------------- 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFE-KGNLSFTAFDMSGQGKYRGL-------------- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEE-ECCEEEEEEECCCCHhhHHH--------------
Confidence 5899999999999999999975422 22333343322 222 35678999999998654322
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc--C
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--L 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~--~ 521 (666)
...+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+...... .++...+ .+.. .
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l--~~~~~~~ 136 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLL--GLENIKD 136 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHh--CCccccC
Confidence 23467899999999999986544322 23333322 47999999999999653221 1111111 1111 1
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
...+++++||++|.|++++|++|.
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHh
Confidence 124589999999999999999885
No 152
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=1.1e-18 Score=170.59 Aligned_cols=154 Identities=27% Similarity=0.436 Sum_probs=118.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-----------------ccCCCCcccceeEEEEe--ecCeeEEEEecCCccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------------VVDEPGVTRDRMYGRSF--WGEHEFMLVDTGGVLN 223 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~i~liDTpG~~~ 223 (666)
..+|+++|+.|+|||||+++|++..... .....+.|.+....... ..++.+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3579999999999999999998653111 11224677777777777 8889999999999864
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+...+.+++..+|++|+|+|+..|+..+..+.+..++. .+
T Consensus 83 --------------------------------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~ 122 (188)
T PF00009_consen 83 --------------------------------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LG 122 (188)
T ss_dssp --------------------------------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT
T ss_pred --------------------------------------eeecccceecccccceeeeecccccccccccccccccc--cc
Confidence 12445677899999999999999999999999999987 58
Q ss_pred CcEEEEeccCCCCccchhhH----H-HHH-hcC------CCCeeecccCCCChHHHHHHHHHHhh
Q 005979 304 KFIILAVNKCESPRKGIMQV----S-EFW-SLG------FSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~~----~-~~~-~~~------~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.|+++|+||+|+........ . .+. ..+ ++++++||.+|.|+.+|++.|.+.+|
T Consensus 123 ~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 89999999999985332211 1 121 111 36899999999999999999998876
No 153
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=2.3e-18 Score=165.84 Aligned_cols=150 Identities=26% Similarity=0.321 Sum_probs=102.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+++|++.......+..|.. ...+.. ++..+.+|||||+.++..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~-~~~~l~l~D~~G~~~~~~-------------- 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEY-EGYKLNIWDVGGQKTLRP-------------- 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEE-CCEEEEEEECCCCHHHHH--------------
Confidence 3579999999999999999999977433233322321 123333 567899999999854321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHH----HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh----c
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR----A 520 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~----~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~----~ 520 (666)
....+++.+|++++|+|++++.+..+. .++..+. ..++|+++|+||+|+...... + .+.+.+. .
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~----~~~~~~~~~~~~ 146 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE---E----EIREALELDKIS 146 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH---H----HHHHHhCccccC
Confidence 234478999999999999886444332 2333332 247899999999999653211 1 1222222 1
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHH
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
...++++++||++|.|++++|+++.
T Consensus 147 ~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 147 SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCceEEEeccCCCCcCHHHHHHHHh
Confidence 2356899999999999999999875
No 154
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=2.3e-18 Score=199.39 Aligned_cols=166 Identities=19% Similarity=0.336 Sum_probs=125.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|+||||||||+|+|+|.. ..+++++|+|++.....+.. ++.++.+|||||+.++...... ...++. +.+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~-~s~~E~-i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQ-TSLDEQ-IAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEc-CceEEEEEECCCcccccccccc-ccHHHH-HHH
Confidence 3689999999999999999999875 57899999999998888874 7889999999999876543211 112222 122
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
.......+|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.+.+... . ..+ .+.+..++|++++|
T Consensus 79 ~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~--i-d~~----~L~~~LG~pVvpiS 149 (772)
T PRK09554 79 HYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIR--I-DID----ALSARLGCPVIPLV 149 (772)
T ss_pred HHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcH--H-HHH----HHHHHhCCCEEEEE
Confidence 22223589999999999875 455667788888999999999999986433221 1 112 23333468999999
Q ss_pred CccCCCHHHHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~~~ 549 (666)
|++|.|++++.+.+.+..+
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999999987654
No 155
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=3e-18 Score=167.48 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=107.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++|++.. +.....+..+.+.....+.. ++ ..+.+|||||..++..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~-------------- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDE-FSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRS-------------- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHh--------------
Confidence 489999999999999999999765 32223344444443334443 33 3678999999754321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|++++.+..... |+..+... ..|+|+|+||+|+.+....... ....+....+++
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~------~~~~~~~~~~~~ 138 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSN------IAKSFCDSLNIP 138 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHH------HHHHHHHHcCCe
Confidence 2344788999999999998876555443 55555543 5799999999999754332211 111222233568
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++|..+.+...
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999886643
No 156
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.78 E-value=1.4e-18 Score=170.24 Aligned_cols=148 Identities=30% Similarity=0.335 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh--hHHHH------HhcCC--
Q 005979 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSEF------WSLGF-- 331 (666)
Q Consensus 262 i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~--~~~~~------~~~~~-- 331 (666)
+...+..+++++|+|++|+|+++........+. .. ..++|+++|+||+|+...... ....+ ...++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHH--Hh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 456677788999999999999875543333331 11 147899999999998653221 11111 12233
Q ss_pred -CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccC--------cccccCC
Q 005979 332 -SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED--------RTIVSPI 402 (666)
Q Consensus 332 -~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~--------~~~~~~~ 402 (666)
.++++||++|.|+++|++.|.+.++. ..+++++|.||||||||+|+|++.. ...++..
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI 166 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC
Confidence 57999999999999999999887752 2579999999999999999999753 2467888
Q ss_pred CcceeeeEeEEEecCCCceEEEEEcCCC
Q 005979 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (666)
Q Consensus 403 ~gtT~d~~~~~~~~~~~~~~~liDTpG~ 430 (666)
||||++.....+. ..+.||||||+
T Consensus 167 ~gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 167 PGTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred CCeeeeeEEEecC----CCCEEEeCcCC
Confidence 9999998765552 25799999995
No 157
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.78 E-value=6.1e-18 Score=160.59 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=104.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|.+|||||||+++|++... .....+..+.+.....+...+ ...+.+|||||+.++.. .
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------------~ 65 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS--------------V 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH--------------h
Confidence 4899999999999999999997642 223333333333333333322 23789999999854321 2
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
...+++.+|++++|+|++++.+.+... |+..+.. .+.|+++|+||+|+........ + ........ .+.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~----~~~~~~~~-~~~~~ 139 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTF-L----EASRFAQE-NGLLF 139 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCH-H----HHHHHHHH-cCCEE
Confidence 344678999999999999876665543 4454443 3789999999999975332221 1 11222222 34789
Q ss_pred EEEeCccCCCHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~ 546 (666)
+++||++|.|+.++|+.+.+
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 140 LETSALTGENVEEAFLKCAR 159 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
No 158
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=1.7e-18 Score=164.54 Aligned_cols=152 Identities=16% Similarity=0.075 Sum_probs=98.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
.||+++|.+|||||||++++..... ....|++..+. ..+.. ....+.+|||||+.++.. ..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~~--~~~~~-~~~~~~l~D~~G~~~~~~--------------~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRP--------------LW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcce--EEEEE-CCEEEEEEECCCCHhHHH--------------HH
Confidence 3899999999999999999974432 23334333322 22333 566899999999865422 12
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
..++++||++|+|+|+++..+..+. .++..+.. ...|++||+||+|+.+... .++....+...........+
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~ 138 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYI 138 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEE
Confidence 3478999999999999875433332 23433322 2589999999999954321 11111111100001123457
Q ss_pred EEEeCccCCCHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~ 545 (666)
+++||++|.||+++|++|.
T Consensus 139 ~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 139 QATCATSGDGLYEGLDWLS 157 (159)
T ss_pred EEeeCCCCCCHHHHHHHHh
Confidence 8999999999999999885
No 159
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=174.38 Aligned_cols=190 Identities=25% Similarity=0.263 Sum_probs=138.1
Q ss_pred hhhcccchhhhhhhhhhhc-ccc-cccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec
Q 005979 132 LIIQDETDDRKDSGKKQKK-RKT-TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG 209 (666)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~ 209 (666)
++++++++++.++...++. ... ......+.+..+|++||.|+||||||+|+|++.+ ..+.+++++|..+..+.+.++
T Consensus 30 ~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ 108 (365)
T COG1163 30 LLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYK 108 (365)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeec
Confidence 4455666677776664221 111 3455667788899999999999999999999997 788999999999999999999
Q ss_pred CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH
Q 005979 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (666)
Q Consensus 210 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~ 289 (666)
|.+|+++|+||+......... .| +++...++.||+|++|+|+..+....
T Consensus 109 ga~IQild~Pgii~gas~g~g-------------rG------------------~~vlsv~R~ADlIiiVld~~~~~~~~ 157 (365)
T COG1163 109 GAQIQLLDLPGIIEGASSGRG-------------RG------------------RQVLSVARNADLIIIVLDVFEDPHHR 157 (365)
T ss_pred CceEEEEcCcccccCcccCCC-------------Cc------------------ceeeeeeccCCEEEEEEecCCChhHH
Confidence 999999999999865443321 01 45567789999999999975433211
Q ss_pred HHHHHHHHHh--------------------------------------------h-------------------------
Q 005979 290 DEEIADWLRK--------------------------------------------N------------------------- 300 (666)
Q Consensus 290 d~~i~~~l~~--------------------------------------------~------------------------- 300 (666)
+ .+.+.|.. .
T Consensus 158 ~-~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n 236 (365)
T COG1163 158 D-IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN 236 (365)
T ss_pred H-HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc
Confidence 1 11222221 0
Q ss_pred cCCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 301 YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 301 ~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
...+|.++|+||+|+...+. .....+ -...+++||..|.|+++|.+.|++.+.-
T Consensus 237 rvY~p~l~v~NKiD~~~~e~--~~~l~~-~~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 237 RVYKPALYVVNKIDLPGLEE--LERLAR-KPNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ceeeeeEEEEecccccCHHH--HHHHHh-ccceEEEecccCCCHHHHHHHHHHhhCe
Confidence 02568999999999987332 222222 2388999999999999999999998863
No 160
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=4.7e-18 Score=162.29 Aligned_cols=152 Identities=20% Similarity=0.252 Sum_probs=113.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec---CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
|.|+++|++|+|||||+|+|++... .....+++|.+.......+. +..+.+|||||+....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~--------------- 64 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT--------------- 64 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---------------
Confidence 5799999999999999999998763 33445677777665666654 6789999999985311
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|+.++...+....+.+++. .++|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 65 -----------------------NMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANP 119 (168)
T ss_pred -----------------------HHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccH
Confidence 122345678999999999998877777777777766 5789999999999874321
Q ss_pred hhH----HHHH-------hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 MQV----SEFW-------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 ~~~----~~~~-------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ..+. ....+++++||.+|.|+.+|+++|.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 111 1111 11246899999999999999999987654
No 161
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=1.6e-18 Score=165.50 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=103.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
||+++|.+|||||||+++++... + ...+++++.......+.. ++. .+.+|||||+.+... ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------------~~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-F-IGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT-------------EQ 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-c-ccccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc-------------ch
Confidence 58999999999999999998643 2 334444443333333332 443 688999999864210 11
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++|+|+|++++.+.+... |+.++.+ .++|+++|+||+|+...+..... . ...+....+.
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~-----~-~~~~~~~~~~ 138 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTE-----E-GEKLASELGC 138 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHH-----H-HHHHHHHcCC
Confidence 334678999999999999876665543 4455544 26899999999998543322211 1 1122222347
Q ss_pred CEEEEeCccC-CCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAG-QSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g-~gv~~L~~~i~~~~ 548 (666)
+++++||++| .||+++|..+.+..
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHH
Confidence 8999999999 49999999997643
No 162
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=3.7e-18 Score=193.22 Aligned_cols=160 Identities=22% Similarity=0.231 Sum_probs=125.0
Q ss_pred eEEEecCCCCChhHHHHHHhccC--cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~--~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.|+++|++|+|||||+|+|++.. .+.....+|+|.+.....+.. ++..+.+|||||+.++ ...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f--------------~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKF--------------ISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHH--------------HHH
Confidence 68999999999999999999743 233344678999988777775 5689999999998543 334
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHHHHHHHhcC---CCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL---DWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~---~~~~i 526 (666)
+..++..+|++++|+|++++...+..+.+..+...++| +|+|+||+|+.+.. ..+...+.+.+.+... .++|+
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~---~~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE---EIKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH---HHHHHHHHHHHHHHHhCCCCCCcE
Confidence 56678899999999999998888888888878788999 99999999997532 2222333444444332 25899
Q ss_pred EEEeCccCCCHHHHHHHHHHHHHh
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++||++|.|+++++..|......
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999998877654
No 163
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=6e-18 Score=162.45 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=108.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+|+++|.+|||||||++++++.. +.....++.+.+.....+.. ++ ..+.+|||||+.++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------------- 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRK------------- 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHH-------------
Confidence 3689999999999999999998654 33333444444444444443 34 4789999999754321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.....+++.+|++++|+|++++.+.++.. |+..+... ++|+++|+||+|+........ ...+.+.....
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~------~~~~~~~~~~~ 140 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT------DLAQRFADAHS 140 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH------HHHHHHHHHcC
Confidence 11234678999999999999887766664 44555543 589999999999865433221 11222333335
Q ss_pred CCEEEEeCcc---CCCHHHHHHHHHHHH
Q 005979 524 APIVYSTAIA---GQSVDKIIVAAEMVD 548 (666)
Q Consensus 524 ~~ii~vSAk~---g~gv~~L~~~i~~~~ 548 (666)
.+++++||++ +.|++++|..+.+..
T Consensus 141 ~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 141 MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 8899999999 899999999887543
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=9.1e-18 Score=160.51 Aligned_cols=163 Identities=32% Similarity=0.469 Sum_probs=121.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~------------ 69 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG------------ 69 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc------------
Confidence 35899999999999999999999876677788899988887777888889999999999753221110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc--h
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~--~ 320 (666)
+...........+..+|++++|+|+..+.+.....+...+.. .++|+++|+||+|+.... .
T Consensus 70 ---------------~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~ 132 (174)
T cd01895 70 ---------------IEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKT 132 (174)
T ss_pred ---------------HHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHH
Confidence 001111233456788999999999998888777777776655 478999999999987652 1
Q ss_pred hh-HHH-H-Hhc----CCCCeeecccCCCChHHHHHHHHHH
Q 005979 321 MQ-VSE-F-WSL----GFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ~~-~~~-~-~~~----~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.. ... . ..+ ..+++++||++|.|+.++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 133 MKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 11 111 1 112 2478999999999999999988653
No 165
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=1.7e-18 Score=171.82 Aligned_cols=181 Identities=22% Similarity=0.294 Sum_probs=133.6
Q ss_pred hhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 367 ~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..+..+|+++|.||||||||.|.++|...+.++....||+..+.+.+.. +..++.|+||||+........ ..+...
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~--~~l~~s 144 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRR--HHLMMS 144 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhh--HHHHHH
Confidence 44567899999999999999999999999999999999999999998874 777999999999987654331 223333
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-CCcEEEEEecccCCCCcchh----------hHHHHHHHHH
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-GKGCLIVVNKWDTIPNKNQQ----------TATYYEQDVR 515 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-~~pvIlv~NK~Dl~~~~~~~----------~~~~~~~~l~ 515 (666)
.......++..||++++|+|+++.-+.-+-+++..+.+. .+|-|+|+||+|....+..- .......+++
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 344667889999999999999864334444456666654 68999999999986542210 0011122334
Q ss_pred HHHhcCC-------------CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 516 EKLRALD-------------WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 516 ~~l~~~~-------------~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+.+.... +-.+|.+||++|.||++|-++|......
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 4443332 2349999999999999999999876543
No 166
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=1.2e-18 Score=165.23 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=98.3
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
||+++|.+|||||||++++...... ...+++..+. ..+.. .+..+.+|||||+.++.. ...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~~~~--~~~~~-~~~~~~i~Dt~G~~~~~~--------------~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIGFNV--ETVTY-KNLKFQVWDLGGQTSIRP--------------YWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccCcCe--EEEEE-CCEEEEEEECCCCHHHHH--------------HHH
Confidence 6899999999999999999765432 2233222222 22332 567899999999855322 234
Q ss_pred HHHhhCCeEEEEeeccccCCHH--HHHHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 453 RAIRRSDVVALVIEAMACITEQ--DCRIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~--d~~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
.+++.+|++|+|+|+++..+.. ...+...+.. .++|+++|+||+|+..... ..++...+........+.+++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCcEEEE
Confidence 4788999999999998753322 1223333332 3799999999999964321 111222211111111235799
Q ss_pred EEeCccCCCHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~ 546 (666)
++||++|.|++++|+++.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998863
No 167
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=9.5e-18 Score=159.38 Aligned_cols=155 Identities=17% Similarity=0.110 Sum_probs=107.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|+|||||++++++... .....+.++.+.....+.. ++ ..+.+|||||..++. .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~--------------~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFR--------------S 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHH--------------H
Confidence 4899999999999999999997653 3344444454444444443 34 478999999975431 1
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
....+++.+|++++|+|++++.+.+... |+..+.. .++|+++|+||+|+........ +. ..+.. ...+++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~-~~----~~~~~-~~~~~~ 138 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSR-EE----AEAFA-EEHGLP 138 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCH-HH----HHHHH-HHcCCe
Confidence 2344678999999999999876655543 5555544 3689999999999865332211 11 11122 223578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++++.|.+..
T Consensus 139 ~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 139 FFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 168
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=8.8e-18 Score=159.64 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=103.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccc-ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|++|+|||||+|++++..... ..+..|.+.......+. ..+..+.+|||||..++.. .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~--------------~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRS--------------L 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHH--------------H
Confidence 589999999999999999999775332 22233332322222332 1234789999999754311 1
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
...+++.+|++++|+|+++..+... ..|+..+... +.|+++++||+|+........ + ......... +.++
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~----~~~~~~~~~-~~~~ 140 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVST-E----EAQEYADEN-GLLF 140 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCH-H----HHHHHHHHc-CCEE
Confidence 2346789999999999987644333 3355555554 478999999999874332221 1 112222222 3789
Q ss_pred EEEeCccCCCHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++||++|.|+.++|+.|.+.
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 141 FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998754
No 169
>CHL00071 tufA elongation factor Tu
Probab=99.78 E-value=4.4e-18 Score=185.80 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=120.0
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCc---------------ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDR---------------TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
...++|+++|++|+|||||+|+|++... .......|+|++.....+.. ++..+.|+||||+.++
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence 3457899999999999999999996421 11222379999988777763 6778999999997542
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
...+...+..+|++++|+|+..++..++..++..+...++| +|+|+||||+.+.. ...+.+.+
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~~ 152 (409)
T CHL00071 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVEL 152 (409)
T ss_pred --------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHHH
Confidence 34556788899999999999999999999999999999999 77899999997532 33445556
Q ss_pred HHHHHHhcCCC----CCEEEEeCccCCCH
Q 005979 513 DVREKLRALDW----APIVYSTAIAGQSV 537 (666)
Q Consensus 513 ~l~~~l~~~~~----~~ii~vSAk~g~gv 537 (666)
++...+....+ +|++++||++|.|+
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 77777766543 79999999999864
No 170
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=3.1e-18 Score=164.48 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=104.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceee-eEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRD-AIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+.+||+++|.+|||||||++++++.. +.+..+.+|+.. .....+.. +| ..+.+|||+|..++..+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~--------- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN--------- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc---------
Confidence 45799999999999999999999765 332344444433 22233433 44 368899999987653322
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH-hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~-~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++|+|+|++++.+.+.. .|++.+.. .++|+++|+||+|+.+....... ..+.+.+. .+..
T Consensus 72 -----~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~--~~~~~~~~---~~~~ 141 (169)
T cd01892 72 -----DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEV--QPDEFCRK---LGLP 141 (169)
T ss_pred -----hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccccccc--CHHHHHHH---cCCC
Confidence 2367999999999999886444433 34443322 36899999999999643321100 01122222 2223
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.+.+..
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHh
Confidence 469999999999999999998654
No 171
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.78 E-value=4e-18 Score=164.03 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=107.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|+|||||++++++... ...+.+++.+.....+.. ++. .+.+|||||..++..+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~----------- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRP----------- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCccccccccc-----------
Confidence 4899999999999999999997642 233444554544444443 443 578999999877644321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHH--hCCcEEEEEecccCCCCcchhh-HH-----HH-HHHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQT-AT-----YY-EQDVREKL 518 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~-~~-----~~-~~~l~~~l 518 (666)
.+++.+|++++|+|++++-+.++.. |...+.. .++|+++|+||+|+.+...... .. .+ .++.....
T Consensus 67 ---~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 67 ---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ---ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 2568999999999999876665553 5555544 4799999999999864321100 00 00 11122223
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
...+..+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 33444579999999999999999998754
No 172
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.78 E-value=9.6e-19 Score=154.97 Aligned_cols=157 Identities=19% Similarity=0.154 Sum_probs=122.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++++++|+|+||||+|+-+|... .+.-+.+.++..|..-..+.. +|. +++||||+|+++|+.+
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrti------------ 73 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTI------------ 73 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHH------------
Confidence 457889999999999999999844 466666667777877777665 444 7899999999877543
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
+..++++.+++++|||++++.++.+.+ |+..++.. ..|-|+|+||.|+.+.+.....+ .+.++...++.
T Consensus 74 --tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~d------Ar~~A~~mgie 145 (198)
T KOG0079|consen 74 --TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTED------ARAFALQMGIE 145 (198)
T ss_pred --HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHH------HHHHHHhcCch
Confidence 345889999999999999998876654 77777764 47889999999997654443222 33445555788
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+|++|||...|++..|..|.+...
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 146 LFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred heehhhhhcccchHHHHHHHHHHH
Confidence 999999999999999999987644
No 173
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=7.5e-18 Score=191.26 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=126.6
Q ss_pred eEEEecCCCCChhHHHHHHhccC--cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~--~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
-|+++|++++|||||+++|+|.+ ++......|+|.+.....+...++..+.+|||||+.++ ...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f--------------i~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF--------------LSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH--------------HHH
Confidence 58999999999999999999743 33444557999988777766556778999999998543 344
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC--CCCEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD--WAPIV 527 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~--~~~ii 527 (666)
+...+..+|++++|+|+.+++..++.+.+..+...++| +|+|+||+|+.+. ...+...+++.+.+...+ ..|++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~---~~~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE---ARIAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH---HHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 56678899999999999999999999988888888888 5799999999753 233344555666655433 47899
Q ss_pred EEeCccCCCHHHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++||++|.|+++|++.|.....
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999986643
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=3.4e-18 Score=165.16 Aligned_cols=155 Identities=16% Similarity=0.058 Sum_probs=101.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..||+++|.+|||||||++++.... + ....|++..+.. .+.. ++..+.+|||||+.++.. .
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-~-~~~~~t~~~~~~--~~~~-~~~~l~l~D~~G~~~~~~--------------~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-S-VTTIPTIGFNVE--TVTY-KNISFTVWDVGGQDKIRP--------------L 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-C-CCcCCccccceE--EEEE-CCEEEEEEECCCChhhHH--------------H
Confidence 4799999999999999999997443 2 233444443332 2332 567899999999865422 2
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.||++|+|+|+++..+..+ ..++..+.. .+.|++||+||+|+..... .+++.+.+.........+.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGLHSIRDRNWY 150 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCccccCCCcEE
Confidence 3446899999999999987644332 234444332 2589999999999964321 1122222211101112345
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++|++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7789999999999999998754
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.77 E-value=7.4e-18 Score=189.87 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=119.6
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+.++|+++|++|+|||||+++|.+.. +.....+|+|.+.....+.+.++..+.||||||+.+|..+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~------------ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM------------ 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH------------
Confidence 456899999999999999999999764 4445567888887666665434448999999999765332
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHH--H-hcC-CCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--L-RAL-DWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~--l-~~~-~~~ 524 (666)
..++++.+|++++|+|++++...+....+..+...++|+|+++||+|+..... +.....+.+. . ... ...
T Consensus 152 --r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~----e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 152 --RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANP----DRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred --HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCH----HHHHHHHHHhhhhHHhcCCCc
Confidence 22467899999999999999888998888888888999999999999964221 1112222110 1 111 235
Q ss_pred CEEEEeCccCCCHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++||++|.|+++|++.|..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999999864
No 176
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.77 E-value=4.6e-18 Score=161.44 Aligned_cols=154 Identities=21% Similarity=0.202 Sum_probs=105.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|||||||+++++... ....+.+++.+........ ++ ..+.+|||||+.++..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------------- 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDYAA-------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhhhH--------------
Confidence 489999999999999999999654 2344555555555444443 33 4789999999865421
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++++|+|++++-+..... ++..+.. .++|+++|+||+|+........ . .......+ .+.
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~-~----~~~~~~~~-~~~ 137 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSS-E----EAANLARQ-WGV 137 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCH-H----HHHHHHHH-hCC
Confidence 2334778999999999998754433322 3343333 4799999999999965222111 1 11111222 246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.+.+.+
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 138 PYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997654
No 177
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.77 E-value=1.3e-17 Score=156.26 Aligned_cols=162 Identities=30% Similarity=0.442 Sum_probs=122.5
Q ss_pred EecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH
Q 005979 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (666)
Q Consensus 376 vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (666)
++|.+|+|||||+|+|++.........+++|.+.....+....+..+.+|||||+..+.... .........++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~-------~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG-------REREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch-------hhHHHHHHHHH
Confidence 58999999999999999887666778888888887766665346789999999997754321 11123455678
Q ss_pred hhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCC
Q 005979 456 RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (666)
Q Consensus 456 ~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~ 535 (666)
+.+|++++|+|+..........+.......++|+++|+||+|+........ ...............+++++||++|.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE---LLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH---HHHHHHhhcccccCCceEEEeeeccC
Confidence 999999999999998877777666677778999999999999976432221 11111223334456899999999999
Q ss_pred CHHHHHHHHHHH
Q 005979 536 SVDKIIVAAEMV 547 (666)
Q Consensus 536 gv~~L~~~i~~~ 547 (666)
|+.++++.+.+.
T Consensus 151 ~v~~l~~~l~~~ 162 (163)
T cd00880 151 GIDELREALIEA 162 (163)
T ss_pred CHHHHHHHHHhh
Confidence 999999988753
No 178
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=7.2e-18 Score=161.57 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=105.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|||||||++++++.. + ...+..++.+.....+...+ ...+.+|||||+.++..+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV-F-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR------------- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------------
Confidence 589999999999999999999664 2 23333444444333443322 2478999999987764332
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..+++.++++++|+|++++.+.+... |...+.+ .++|+++|+||+|+...+.....+ ........+..+
T Consensus 67 -~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~ 140 (168)
T cd04177 67 -ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRED-----GVSLSQQWGNVP 140 (168)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHH-----HHHHHHHcCCce
Confidence 23578899999999998865544433 4444433 368999999999996543322111 111112233478
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++|.++.+.
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999753
No 179
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=6.1e-18 Score=160.31 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=99.6
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|.+|||||||+|+|++.......+..+.+. ..+....+..+.+|||||+.++.. ...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~--------------~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRT--------------VWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhHHH--------------HHH
Confidence 58999999999999999999876433322222222 223223456899999999854311 123
Q ss_pred HHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHH-HHHhcCCCCCE
Q 005979 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDWAPI 526 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~-~~l~~~~~~~i 526 (666)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+..... .++....+. ..+....+.++
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEE
Confidence 467899999999999886543332 23333322 4799999999999854211 111221111 11122234579
Q ss_pred EEEeCccCCCHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~ 546 (666)
+++||++|.|++++|+.|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999998863
No 180
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.77 E-value=5.8e-18 Score=160.68 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=102.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccc-ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|+|||||+|+|++..... ..+..+.+.......+. .....+.+|||||+.++...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~-------------- 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFRTL-------------- 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhhhh--------------
Confidence 489999999999999999999765322 23333333332222221 12347899999997554221
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|+++..+.+... |+..+.. .+.|+++|+||+|+.... ... ++ ..+ +.....++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~-~~----~~~-~~~~~~~~ 138 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTR-EE----GLK-FARKHNML 138 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCH-HH----HHH-HHHHcCCE
Confidence 234678999999999998866555433 4454544 368899999999997322 111 11 111 12223678
Q ss_pred EEEEeCccCCCHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~ 546 (666)
++++||++|.|++++++.+.+
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999998864
No 181
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=163.97 Aligned_cols=166 Identities=32% Similarity=0.445 Sum_probs=111.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..++|+++|.+|||||||+|+|++.. ..++..+++|.+.... .+. .+.+|||||+...........+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~-------- 74 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQE-------- 74 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHH--------
Confidence 35789999999999999999999986 5577788888876543 333 6999999997542221111000
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-----------CHHHHHHHHHHHhhcCCCcEEEEe
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----------TAADEEIADWLRKNYMDKFIILAV 310 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-----------~~~d~~i~~~l~~~~~~~p~ilv~ 310 (666)
.+...+...+...+..++++++|+|+.... ...+.++...+.. .++|+++|+
T Consensus 75 ---------------~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~ 137 (201)
T PRK04213 75 ---------------KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAV 137 (201)
T ss_pred ---------------HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEE
Confidence 111112222233456789999999986421 2234556666665 479999999
Q ss_pred ccCCCCccchhhHHHH-HhcCC---------CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 311 NKCESPRKGIMQVSEF-WSLGF---------SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 311 NK~D~~~~~~~~~~~~-~~~~~---------~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
||+|+.........++ ..++. .++++||++| |+++++++|.+.+.+.
T Consensus 138 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 138 NKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 9999865431111121 12232 4699999999 9999999999877643
No 182
>PRK09866 hypothetical protein; Provisional
Probab=99.77 E-value=2.2e-16 Score=172.86 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=86.5
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC--cEEEEEecc
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK--GCLIVVNKW 496 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~--pvIlv~NK~ 496 (666)
...++|+||||+..... ..+.. .+.+.+..+|+||||+|+..+.+..+..+++.+.+.++ |+++|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~-----~~L~k----~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ-----PHLQK----MLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccc-----hHHHH----HHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 35799999999964211 11222 23347999999999999998888999999999988885 999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHh--cCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 497 DTIPNKNQQTATYYEQDVREKLR--ALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 497 Dl~~~~~~~~~~~~~~~l~~~l~--~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
|+.+... ...+.+...+...+. ...+..+|+|||++|.|++.|++.|..
T Consensus 300 Dl~dree-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNS-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCccc-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 9864322 122334444443333 233567999999999999999999874
No 183
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=9.1e-18 Score=161.69 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=104.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++.. +. ..+.++..+.....+.. ++. .+.+|||||+.++..+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ-FP-EVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLR------------ 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCccccceEEEEEE-CCEEEEEEEEeCCCchhhhhcc------------
Confidence 589999999999999999999754 22 22333433433334443 333 68999999986653322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHH--hCCcEEEEEecccCCCCcchhhH-H-----HH-HHHHHHHH
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTA-T-----YY-EQDVREKL 518 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~-~-----~~-~~~l~~~l 518 (666)
..+++.+|++++|+|+++..+.++. .|...+.. .++|+++|+||+|+.+....... . .. .....+..
T Consensus 67 --~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 67 --PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred --ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 1256899999999999876554444 25555554 37899999999998643211000 0 00 01112222
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
...+..++++|||++|.|++++|..|.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 23344589999999999999999999754
No 184
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=5.4e-18 Score=162.38 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=104.8
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|||||||+++|++... ..... ++..+.....+... ....+.+|||||+.++..+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~------------- 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR------------- 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc-------------
Confidence 4899999999999999999997653 22222 33333333333321 23479999999987643221
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhH------HHHHHHHHHHHhc
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA------TYYEQDVREKLRA 520 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~------~~~~~~l~~~l~~ 520 (666)
...++.+|++++|+|+++..+.... .|+..+... ++|+++|+||+|+......... .-......+....
T Consensus 66 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 -PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 1245889999999999876554443 355555554 5999999999999765322100 0001122233333
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.+..+++++||++|.|+++++..|.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 44448999999999999999998864
No 185
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=3.2e-18 Score=161.96 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=102.8
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
||+++|.+|||||||++++++.......+..+.+.+ .+.. ++..+.+|||||+.++.. ...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~-~~~~~~i~D~~G~~~~~~--------------~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEY-KNVSFTVWDVGGQDKIRP--------------LWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEE-CCEEEEEEECCCChhhHH--------------HHH
Confidence 689999999999999999998763333333333332 2332 467899999999865321 123
Q ss_pred HHHhhCCeEEEEeeccccCCHHH-HHHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d-~~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
.+++.+|++++|+|++++-+... ..++..+.. .+.|+++|+||+|+..... .+++.+.+..........+++
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---VSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---HHHHHHhhChhhccCCcEEEE
Confidence 46789999999999987633322 223333322 4789999999999975431 222223222221223456899
Q ss_pred EEeCccCCCHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~ 546 (666)
++||++|.|++++|+.|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998863
No 186
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=5.1e-18 Score=164.83 Aligned_cols=153 Identities=18% Similarity=0.107 Sum_probs=102.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..||+++|.+|||||||++++...... ...|++..+.. .+.. ++..+.+|||||+.++.. .
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~~--~~~~-~~~~~~i~D~~Gq~~~~~--------------~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY-KNISFTVWDVGGQDKIRP--------------L 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeEE--EEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 479999999999999999999854322 23343333322 3333 567899999999855422 2
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC----
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL---- 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~---- 521 (666)
...+++++|++|+|+|+++..+..+.. ++..+.. .++|++||+||+|+..... .+ ++.+.+.-.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~----~~~~~l~l~~~~~ 150 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AA----EITDKLGLHSLRQ 150 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HH----HHHHHhCccccCC
Confidence 244789999999999999764443322 3333321 3689999999999865322 12 222333211
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
....++++||++|+||.++|++|.+...
T Consensus 151 ~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 151 RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 1224668999999999999999976543
No 187
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=7e-18 Score=161.93 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=100.2
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
||+++|.+|||||||+++|.+... ....|++..+. ..+.. ++..+.+|||||+.++.. ...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~T~~~~~--~~~~~-~~~~i~l~Dt~G~~~~~~--------------~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIPTIGFNV--ETVEY-KNLKFTIWDVGGKHKLRP--------------LWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCCcCceeE--EEEEE-CCEEEEEEECCCChhcch--------------HHH
Confidence 689999999999999999997632 23333322222 23443 567899999999865422 233
Q ss_pred HHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC-----C
Q 005979 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-----D 522 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~-----~ 522 (666)
.+++.+|++++|+|+++..+..+. .++..+.. .+.|+++|+||+|+..... .+ ++.+.+... .
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~----~~~~~~~~~~~~~~~ 134 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS---VE----EMTELLSLHKLCCGR 134 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC---HH----HHHHHhCCccccCCC
Confidence 467999999999999886444333 34444432 2489999999999954211 11 122222111 1
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+++++||++|.||+++|++|.+.+
T Consensus 135 ~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred cEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 23688999999999999999997654
No 188
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.3e-18 Score=180.09 Aligned_cols=165 Identities=32% Similarity=0.363 Sum_probs=129.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.+.|||+|+||||||||+|+|.....++|++.+|+|+|.....+.++|.++.|+||+|+-... .+..+.++
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~---~~~iE~~g------ 338 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES---NDGIEALG------ 338 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc---CChhHHHh------
Confidence 378999999999999999999999999999999999999999999999999999999997622 22233322
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc----------CCCcEEEEecc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----------MDKFIILAVNK 312 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~----------~~~p~ilv~NK 312 (666)
-+++...+..+|++++|+|+....+..+..+.+.|.... ...|++++.||
T Consensus 339 --------------------I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk 398 (531)
T KOG1191|consen 339 --------------------IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANK 398 (531)
T ss_pred --------------------HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEech
Confidence 267778899999999999998888888888888776532 23688999999
Q ss_pred CCCCccch-hhH--HHHHh----cCCCC-eeecccCCCChHHHHHHHHHHhh
Q 005979 313 CESPRKGI-MQV--SEFWS----LGFSP-LPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 313 ~D~~~~~~-~~~--~~~~~----~~~~~-i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.|+..... ... ..+.. ..+++ +.+|+.+++|+..|...|.+.+.
T Consensus 399 ~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 399 SDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred hhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 99876411 110 01111 12344 45999999999999998877654
No 189
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=5e-18 Score=158.92 Aligned_cols=150 Identities=31% Similarity=0.393 Sum_probs=107.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+||+++|.+|+|||||+|++++.. ......++++.+.....+.. ++ ..+.+|||||+.++..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~------------ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIR------------ 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHH------------
Confidence 689999999999999999999877 77788888999887766664 55 578999999976543221
Q ss_pred HHHHHHhhCCeEEEEeecccc-CC------HHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 450 RAFRAIRRSDVVALVIEAMAC-IT------EQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~-~t------~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+.++.++.++|.... .+ .....+.... ..+.|+++|+||+|+.... ........+....
T Consensus 68 --~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~ 137 (161)
T TIGR00231 68 --RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-------LKTHVAFLFAKLN 137 (161)
T ss_pred --HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-------hhHHHHHHHhhcc
Confidence 1234556666666666543 11 1222222222 2278999999999996532 1233445555666
Q ss_pred CCCEEEEeCccCCCHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
..+++++||++|.|+.++++.|.
T Consensus 138 ~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 138 GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCceEEeecCCCCCHHHHHHHhh
Confidence 78899999999999999998874
No 190
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=7.8e-18 Score=165.99 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=105.4
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
||+++|.+|||||||+++|++... ...+..++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-------------- 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAM-------------- 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhhHH--------------
Confidence 689999999999999999997642 233334444433334443 44 47899999998654221
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++|+|+|++++.+.++.. |+..+.+ .++|+|+|+||+|+.........+ ...+......+.+
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~----~~~~~~~~~~~~~ 139 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK----DALSTVELDWNCG 139 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH----HHHHHHHhhcCCc
Confidence 123678999999999999876655443 3344443 479999999999996531111111 1111222122468
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++|+++.+...
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987553
No 191
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=6.5e-18 Score=185.96 Aligned_cols=158 Identities=29% Similarity=0.363 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+||++|.||||||||||+|+|.+ ..++++||+|.+...+...+.+..+.++|.||..+...-..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------------ 69 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------------ 69 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------------
Confidence 3469999999999999999999998 789999999999999999999999999999999875433211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~- 319 (666)
++.+++++ ..+|+|+.|+|+. ..++.+.-.++-...+.|+++++|++|...+.
T Consensus 70 --------------------E~Var~~ll~~~~D~ivnVvDAt----nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 70 --------------------EKVARDFLLEGKPDLIVNVVDAT----NLERNLYLTLQLLELGIPMILALNMIDEAKKRG 125 (653)
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEcccc----hHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcC
Confidence 13334444 4589999999986 44444444333333689999999999976542
Q ss_pred --hhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 --IMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 --~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.....-...+|.+++++||.+|.|+++|++.+.+..+.
T Consensus 126 i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 126 IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 11122234579999999999999999999999865543
No 192
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.4e-17 Score=159.40 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=107.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||++++++.. ......++++.+.....+.. ++ ..+.+|||||+.++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-------------- 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFR-------------- 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHH--------------
Confidence 4799999999999999999998543 23334455555655555554 44 368899999975431
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
.....+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+...+... . .+.+.+......
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~--~----~~~~~~~~~~~~ 144 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS--Q----QRAEEFSDAQDM 144 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC--H----HHHHHHHHHcCC
Confidence 1224578999999999999876554433 24444433 368999999999996543321 1 122233333347
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999754
No 193
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=7.7e-18 Score=163.76 Aligned_cols=157 Identities=18% Similarity=0.070 Sum_probs=100.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..||+++|.+|||||||++++...... ...|++..+. ..+.. ++..+.+|||||+.++.. .
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~--------------~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIGFNV--ETVEY-KNLKFTMWDVGGQDKLRP--------------L 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccccce--EEEEE-CCEEEEEEECCCCHhHHH--------------H
Confidence 379999999999999999999754322 2233322222 23333 567899999999854322 2
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHH-H---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIE-Q---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~-~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++|+|+|+++..+..+.. ++..+. . ..+|++||+||.|+.+.... +++...+..........+
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQRNWY 154 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCCcEE
Confidence 345789999999999998754333322 333332 2 25899999999998543211 112222111000111235
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|++++|++|.+...
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHH
Confidence 778999999999999999986543
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.76 E-value=8.3e-18 Score=190.53 Aligned_cols=154 Identities=25% Similarity=0.379 Sum_probs=116.2
Q ss_pred cCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhh
Q 005979 378 GRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR 457 (666)
Q Consensus 378 G~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~ 457 (666)
|.||||||||+|+++|.. ..+++++|+|++.....+.+ ++.++.+|||||+.++.... .++ .+.+.....+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s-----~~e-~v~~~~l~~~~ 72 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFS-----LEE-EVARDYLLNEK 72 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccc-----hHH-HHHHHHHhhcC
Confidence 899999999999999875 57899999999998888775 77889999999998764432 111 12222223357
Q ss_pred CCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCH
Q 005979 458 SDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSV 537 (666)
Q Consensus 458 advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv 537 (666)
+|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.+...... + . +.+.+..++|++++||++|.|+
T Consensus 73 aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~--d-~----~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 73 PDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRI--D-E----EKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChh--h-H----HHHHHHcCCCEEEEECCCCCCH
Confidence 9999999999873 4456666777788999999999999864332211 1 1 2233334689999999999999
Q ss_pred HHHHHHHHHHH
Q 005979 538 DKIIVAAEMVD 548 (666)
Q Consensus 538 ~~L~~~i~~~~ 548 (666)
+++++.+.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 195
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=1.3e-17 Score=182.52 Aligned_cols=157 Identities=32% Similarity=0.373 Sum_probs=120.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.||||||||+|+|++...+++.+.+|+|++.....+.++|..+.+|||||+..... ..+.+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~------- 271 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERL------- 271 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHH-------
Confidence 4689999999999999999999988788999999999999999999999999999999964221 11100
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
-...+..++..+|++++|+|++.+.+..+. ++..+.. .++|+++|+||+|+.....
T Consensus 272 -------------------gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~~-- 327 (442)
T TIGR00450 272 -------------------GIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINSL-- 327 (442)
T ss_pred -------------------HHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcch--
Confidence 012345678899999999999888776655 4444433 4789999999999865421
Q ss_pred HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 323 VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 323 ~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..+ ..++.+++.+||++ .|+.++++.+.+.+.
T Consensus 328 -~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -EFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -hhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 111 23455779999998 699999988876554
No 196
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=1.5e-17 Score=163.23 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=111.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcC------CcccccCCCCcccceeEEEEeec--------------CeeEEEEecCCcccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPGVTRDRMYGRSFWG--------------EHEFMLVDTGGVLNV 224 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~------~~~~~~~~~~~t~~~~~~~~~~~--------------~~~i~liDTpG~~~~ 224 (666)
+|+++|++|+|||||+++|++. ........+|+|.+.......+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6999999999999999999973 12233445678887776666655 67899999999842
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCC
Q 005979 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~ 304 (666)
+.+.+...+..+|++++|+|+..+.+.++.+...+... .+.
T Consensus 81 -------------------------------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~ 121 (192)
T cd01889 81 -------------------------------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCK 121 (192)
T ss_pred -------------------------------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCC
Confidence 11334466788999999999998877776555554443 367
Q ss_pred cEEEEeccCCCCccchh-----hHHH-----HH---hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 305 FIILAVNKCESPRKGIM-----QVSE-----FW---SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 305 p~ilv~NK~D~~~~~~~-----~~~~-----~~---~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
|+++|+||+|+...... .... +. ..+++++++||++|.|+.+|++.|...++.
T Consensus 122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 99999999998743211 1111 11 124578999999999999999999887763
No 197
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.3e-17 Score=192.00 Aligned_cols=158 Identities=22% Similarity=0.318 Sum_probs=121.0
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+.+.|+++|++|+|||||+++|.+.. +......|+|.+.....+.+ ++..++||||||+.+|..+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m------------ 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAM------------ 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEE-CCEEEEEEECCCCccchhH------------
Confidence 456899999999999999999998754 34455677887776666664 6789999999999776332
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHH--HHh-cC-CCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE--KLR-AL-DWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~--~l~-~~-~~~ 524 (666)
..++++.+|++|||||++++...+....+..+...++|+|+|+||+|+..... +.+...+.+ .+. .. ..+
T Consensus 354 --~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~----e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 354 --RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANP----DRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred --HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCH----HHHHHHHHHhcccHHHhCCCc
Confidence 23467889999999999999989998888888889999999999999964321 112222211 111 11 247
Q ss_pred CEEEEeCccCCCHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++||++|.|+++|++.|..
T Consensus 428 p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhh
Confidence 8999999999999999999874
No 198
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1.1e-17 Score=164.26 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=102.6
Q ss_pred ceEEEecCCCCChhHHHH-HHhccC----cccccCCCcce-eeeEeEEE--------ecCCC--ceEEEEEcCCCccccc
Q 005979 372 PAIAIVGRPNVGKSSILN-ALVGED----RTIVSPISGTT-RDAIDTEF--------TGPEG--QKFRLIDTAGIRKRAA 435 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin-~ll~~~----~~~~~~~~gtT-~d~~~~~~--------~~~~~--~~~~liDTpG~~~~~~ 435 (666)
.||+++|.+|||||||++ ++.+.. .+.....|++. .+...... .. +| ..+.||||||+.+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh--
Confidence 699999999999999996 554321 12222233221 12211111 11 33 37899999998531
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHHh--CCcEEEEEecccCCCCcchh------
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNKNQQ------ 505 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~------ 505 (666)
+ ...+++.||++|+|+|+++..+.++.. |+..+... +.|+|+|+||+||.......
T Consensus 80 ~--------------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 80 D--------------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred h--------------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccc
Confidence 0 112679999999999999988877763 66666653 68999999999986421000
Q ss_pred -------hHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 506 -------TATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 506 -------~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
....+...-.+.++...++++++|||++|.||+++|+.+.++
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 000011112334444456799999999999999999988753
No 199
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.76 E-value=1.5e-17 Score=160.45 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=100.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|+|||||++++++.......+..|.+. ..+.. ++..+.+|||||+.++.. .
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~l~D~~G~~~~~~--------------~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVY-KNIRFLMWDIGGQESLRS--------------S 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEE-CCeEEEEEECCCCHHHHH--------------H
Confidence 4699999999999999999998654332222222222 23333 567899999999854321 2
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|++++.+.... .++..+.. .++|+++++||+|+..... .+++.+.+.........++
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~ 152 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWH 152 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceE
Confidence 23467899999999999876443322 23333322 2589999999999864211 1112222211001122457
Q ss_pred EEEEeCccCCCHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~ 545 (666)
++++||++|.|++++|++|.
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred EEecccCCCCCHHHHHHHHh
Confidence 99999999999999999986
No 200
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=2.7e-17 Score=155.78 Aligned_cols=160 Identities=34% Similarity=0.492 Sum_probs=119.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|+|||||+|+|++...+.+...+.+++..........+..+.+|||||+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------------- 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG------------- 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-------------
Confidence 3579999999999999999999998777777777787777766666678899999999875322111
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc-c-h
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-G-I 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~-~-~ 320 (666)
..+.......+..+|++++|+|+.++.+..+..+.+.+.. .+.|+++|+||+|+... . .
T Consensus 70 -----------------~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 70 -----------------ERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred -----------------HHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHH
Confidence 1123344566788999999999998867677777777765 36899999999998732 1 1
Q ss_pred hhHHH-HHhcC--CCCeeecccCCCChHHHHHHHHHH
Q 005979 321 MQVSE-FWSLG--FSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ~~~~~-~~~~~--~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
..... +.... .+++++|++++.|+.+|++.|.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 11111 22222 378999999999999999998764
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=8.7e-18 Score=168.27 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=109.9
Q ss_pred eEEEecCCCCChhHHHHHHhccCcc------------------------------cccCCCcceeeeEeEEEecCCCceE
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEGQKF 422 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~~~~ 422 (666)
.|+++|++++|||||+.+|+..... ......|+|++.....+.. ++..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999999732111 0112348999999888875 88899
Q ss_pred EEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-------CCHHHHHHHHHHHHhC-CcEEEEEe
Q 005979 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEG-KGCLIVVN 494 (666)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-------~t~~d~~i~~~i~~~~-~pvIlv~N 494 (666)
.+|||||+.++ ...+..+++.+|++|+|+|++++ ...+....+..+...+ +|+|+|+|
T Consensus 80 ~liDtpG~~~~--------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 80 TILDAPGHRDF--------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred EEEECCChHHH--------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 99999998543 23445677889999999999883 4445566666566666 68999999
Q ss_pred cccCCCC-cchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHH
Q 005979 495 KWDTIPN-KNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVD 538 (666)
Q Consensus 495 K~Dl~~~-~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~ 538 (666)
|+|+... ......+.+.+.+...+...+ .++++++||++|.|++
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999742 112334445556655555543 3789999999999987
No 202
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.76 E-value=1.6e-17 Score=157.61 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=102.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++++... +. ..++.+..+ ....+.. +| ..+.+|||+|..+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~-~~~~~~~~~-~~~~i~~-~~~~~~l~i~D~~g~~~----------------- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YV-QLESPEGGR-FKKEVLV-DGQSHLLLIRDEGGAPD----------------- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CC-CCCCCCccc-eEEEEEE-CCEEEEEEEEECCCCCc-----------------
Confidence 379999999999999999998653 21 222222222 2234443 55 3689999999742
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh-cCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-ALDW 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~-~~~~ 523 (666)
..+++.+|++++|+|+++..+.+.. .|+..+... +.|+++|+||+|+.........+ ...+.+. ....
T Consensus 60 --~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~----~~~~~~~~~~~~ 133 (158)
T cd04103 60 --AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDD----ARARQLCADMKR 133 (158)
T ss_pred --hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCH----HHHHHHHHHhCC
Confidence 1256789999999999998888774 466666653 47999999999985321111111 1112232 3345
Q ss_pred CCEEEEeCccCCCHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+++++|||++|.||+++|..+.+
T Consensus 134 ~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 134 CSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CcEEEEecCCCCCHHHHHHHHHh
Confidence 78999999999999999998864
No 203
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.76 E-value=1.6e-17 Score=157.28 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=103.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|.+|+|||||+|+|++.... ....+.++.+.....+...+ ...+.+|||||...+.. .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------~ 65 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA--------------L 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH--------------h
Confidence 38999999999999999999976532 22333343444333444322 23689999999754322 1
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
...+++.+|++++|+|++++.+.++.. |+..+... ++|+++|+||+|+........ + .+.+. ....+.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~-~----~~~~~-~~~~~~~~ 139 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK-S----EAEEY-AKSVGAKH 139 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH-H----HHHHH-HHHcCCEE
Confidence 223568899999999998875554443 44444442 689999999999975432211 1 11111 22235789
Q ss_pred EEEeCccCCCHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++||++|.|++++++++.+.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999998753
No 204
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=1.8e-17 Score=156.45 Aligned_cols=153 Identities=29% Similarity=0.391 Sum_probs=111.2
Q ss_pred EEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCc
Q 005979 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIP 247 (666)
Q Consensus 168 ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~ 247 (666)
|+|++|||||||+|+|++.. ..++.++++|.+.....+.+++..+.+|||||+.........
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~----------------- 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED----------------- 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-----------------
Confidence 58999999999999999986 667888999999988888888899999999999764322110
Q ss_pred hhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh--hHHH
Q 005979 248 LATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSE 325 (666)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~--~~~~ 325 (666)
..+...+... ..+|++++|+|+.... ....+...+.. .++|+++|+||+|+...... ....
T Consensus 63 ------------~~~~~~~~~~-~~~d~vi~v~d~~~~~--~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~ 125 (158)
T cd01879 63 ------------EKVARDFLLG-EKPDLIVNVVDATNLE--RNLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDK 125 (158)
T ss_pred ------------HHHHHHHhcC-CCCcEEEEEeeCCcch--hHHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHH
Confidence 0111121222 5899999999998642 22334444544 47999999999998654211 1112
Q ss_pred H-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 326 F-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 326 ~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
+ ..++.+++++||.+|.|+.++++.+.+..
T Consensus 126 ~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 126 LSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred HHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 2 23467899999999999999999987654
No 205
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.76 E-value=1.2e-17 Score=166.69 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=106.4
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++|++.. +.....| |..+.....+.. ++. .+.||||+|...+..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~p-Ti~~~~~~~~~~-~~~~v~L~iwDt~G~e~~~~l------------- 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVP-TVFENYTASFEI-DKRRIELNMWDTSGSSYYDNV------------- 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCccCC-ccccceEEEEEE-CCEEEEEEEEeCCCcHHHHHH-------------
Confidence 589999999999999999999654 3333334 333333334443 443 6889999998554222
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-H-HHHHHHH--hCCcEEEEEecccCCCCcchhhH--H----HHHHHHHHHHh
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-R-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTA--T----YYEQDVREKLR 519 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~-i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~--~----~~~~~l~~~l~ 519 (666)
...+++.+|++|+|||+++..+.+.. . |...+.. .+.|+|||+||+||......... + -+..+-.+.++
T Consensus 66 -~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 66 -RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred -hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 12368999999999999988776665 2 4444443 36899999999999642110000 0 01111233344
Q ss_pred cCCC-CCEEEEeCccCCC-HHHHHHHHHHHH
Q 005979 520 ALDW-APIVYSTAIAGQS-VDKIIVAAEMVD 548 (666)
Q Consensus 520 ~~~~-~~ii~vSAk~g~g-v~~L~~~i~~~~ 548 (666)
...+ ++++++||+++.| |+++|..+..+.
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 3334 5899999999985 999999987653
No 206
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.7e-17 Score=180.25 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC------cc---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED------RT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~------~~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~ 434 (666)
..++|+++|++++|||||+++|++.. .+ ......|+|++.....+.. ++..+.+|||||+.++
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f- 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADY- 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHH-
Confidence 45789999999999999999998631 11 1112569999988777653 6778999999997543
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHH
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
...+...+..+|++++|+|+.+++..++..++..+...++| +|+|+||+|+.+.. ...+.+.++
T Consensus 89 -------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~~~ 153 (394)
T PRK12736 89 -------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVEME 153 (394)
T ss_pred -------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHHHH
Confidence 24456677899999999999999999999999999999999 67899999997422 233334456
Q ss_pred HHHHHhcCC----CCCEEEEeCccCC--------CHHHHHHHHHHH
Q 005979 514 VREKLRALD----WAPIVYSTAIAGQ--------SVDKIIVAAEMV 547 (666)
Q Consensus 514 l~~~l~~~~----~~~ii~vSAk~g~--------gv~~L~~~i~~~ 547 (666)
+.+.+.... .+|++++||++|. ++..|++.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 666665544 3799999999983 455666655543
No 207
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=3.1e-18 Score=154.35 Aligned_cols=156 Identities=21% Similarity=0.140 Sum_probs=121.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+++.++|++.||||+|+..++..... .-.-|++..|.....++..+|. +++||||+|+.+|+++
T Consensus 9 frlivigdstvgkssll~~ft~gkfa-elsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi------------- 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFA-ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI------------- 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccc-ccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH-------------
Confidence 68999999999999999999965433 3335667777766666666676 7899999999887654
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
+..|+|++-++++|+|.++.-++++.. |+.+.... ++-+.+|+.|+||...+.....+ .++++...+
T Consensus 75 -tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE------aEklAa~hg 147 (213)
T KOG0091|consen 75 -TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE------AEKLAASHG 147 (213)
T ss_pred -HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH------HHHHHHhcC
Confidence 456899999999999999988877766 55554432 23367899999998766554322 466777778
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+|++||++|.||++.|+.|.+..
T Consensus 148 M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred ceEEEecccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999887653
No 208
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=1.3e-17 Score=164.09 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=103.9
Q ss_pred ecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH
Q 005979 377 VGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (666)
Q Consensus 377 vG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (666)
+|.+|||||||+++++... +.....+++..+.....+... ....+.||||||..++..+ ...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--------------~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--------------RDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--------------hHHHh
Confidence 6999999999999999543 322223333334333333331 2348999999998665432 23478
Q ss_pred hhCCeEEEEeeccccCCHHHHH-HHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCc
Q 005979 456 RRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (666)
Q Consensus 456 ~~advvllViDa~~~~t~~d~~-i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk 532 (666)
+++|++|+|||++++.+.+... |+..+.+ .+.|+|||+||+|+... ... .+ .+ .+....++++++|||+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~-~~----~~--~~~~~~~~~~~e~SAk 137 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-KVK-AK----SI--TFHRKKNLQYYDISAK 137 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-cCC-HH----HH--HHHHHcCCEEEEEeCC
Confidence 9999999999999987766654 6666766 36899999999998542 221 11 11 1223346789999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 005979 533 AGQSVDKIIVAAEMVD 548 (666)
Q Consensus 533 ~g~gv~~L~~~i~~~~ 548 (666)
+|.||.++|.+|.+.+
T Consensus 138 ~~~~v~~~F~~l~~~i 153 (200)
T smart00176 138 SNYNFEKPFLWLARKL 153 (200)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 209
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.75 E-value=2.5e-17 Score=159.29 Aligned_cols=152 Identities=22% Similarity=0.285 Sum_probs=104.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccc--------------cCCCCcccceeEEEEee-----cCeeEEEEecCCccccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIV--------------VDEPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~--------------~~~~~~t~~~~~~~~~~-----~~~~i~liDTpG~~~~~ 225 (666)
.|+++|++|+|||||+++|++...++. ....|+|.........+ .+..+.+|||||+..+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 589999999999999999987431111 11224454443333333 3456889999999642
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
...+..++..+|++|+|+|++.+.+..+...+..+.. .++|
T Consensus 81 -------------------------------------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~ 121 (179)
T cd01890 81 -------------------------------------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLE 121 (179)
T ss_pred -------------------------------------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCC
Confidence 1234466788999999999998877666555544443 4789
Q ss_pred EEEEeccCCCCccchhh-HHHHH-hcCC---CCeeecccCCCChHHHHHHHHHHhh
Q 005979 306 IILAVNKCESPRKGIMQ-VSEFW-SLGF---SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 306 ~ilv~NK~D~~~~~~~~-~~~~~-~~~~---~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
+++|+||+|+....... ..++. .+++ .++++||++|.|+++|++.|.+.++
T Consensus 122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999986432111 11121 2343 4799999999999999999987765
No 210
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=3.3e-17 Score=163.04 Aligned_cols=157 Identities=17% Similarity=0.090 Sum_probs=107.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||+++|.+|||||||+|+|++... .....++++.+.....+.. ++ ..+.+|||||..++..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~------------ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRS------------ 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH------------
Confidence 357999999999999999999997642 2333344444443333443 33 3688999999754321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++|+|+|+++..+.+.. .|+..+... ..|+++|+||+|+...+.... + .. +.+....+
T Consensus 71 --~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-~----~~-~~~~~~~~ 142 (210)
T PLN03108 71 --ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-E----EG-EQFAKEHG 142 (210)
T ss_pred --HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCH-H----HH-HHHHHHcC
Confidence 234577899999999999987666554 355544432 689999999999965433221 1 11 12222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++++||++|.||+++|.++.+..
T Consensus 143 ~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 143 LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998887543
No 211
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.75 E-value=2.4e-17 Score=165.26 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=103.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcce-eeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT-~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||+++|++.... ...+..+. .+.....+... ....+.+|||||+... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--------------~- 64 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--------------T- 64 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--------------H-
Confidence 48999999999999999999855422 12222221 13333333321 2347899999997410 0
Q ss_pred HHHHHHh-hCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 450 RAFRAIR-RSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 450 ~~~~~i~-~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++ .+|++++|||+++..+.+.. .|+..+.+ .++|+|+|+||+|+.........+ .+.++...+
T Consensus 65 -~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~------~~~~a~~~~ 137 (221)
T cd04148 65 -EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE------GRACAVVFD 137 (221)
T ss_pred -HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHH------HHHHHHHcC
Confidence 112455 89999999999987655543 35555555 368999999999996644322111 122233335
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.||+++|+.+.+...
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986653
No 212
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.75 E-value=1.7e-17 Score=157.48 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=96.1
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|++|+|||||+|+|.|.... . ..|. ...+ .+. .+|||||+..... .......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~---~v~~---~~~--~~iDtpG~~~~~~----------~~~~~~~ 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ---AVEF---NDK--GDIDTPGEYFSHP----------RWYHALI 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce---EEEE---CCC--CcccCCccccCCH----------HHHHHHH
Confidence 7999999999999999999876421 1 1111 1122 122 2699999753211 1123334
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC-CCEEEEeC
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW-APIVYSTA 531 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~-~~ii~vSA 531 (666)
.+++.+|++|+|+|++++.+.....++. + ..++|+++++||+|+... .. + .+.+.+..... .|++++||
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~-~~---~----~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDA-DV---A----ATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCcc-cH---H----HHHHHHHHcCCCCCEEEEEC
Confidence 5688999999999999875543332222 1 246899999999998542 11 1 12233333332 59999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 005979 532 IAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~ 550 (666)
++|.|+++||+.+.+...+
T Consensus 130 ~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCccCHHHHHHHHHHhchh
Confidence 9999999999999876543
No 213
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=2.4e-17 Score=160.38 Aligned_cols=152 Identities=26% Similarity=0.324 Sum_probs=114.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccc---------------cCCCCcccceeEEEEeecCeeEEEEecCCcccccCCch
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 229 (666)
+|+++|.+|+|||||+|+|++...... ....++|.+.......+.+..+.+|||||+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 489999999999999999988753321 122456666666666777889999999998541
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEE
Q 005979 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (666)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv 309 (666)
...+..++..+|++++|+|+.++.......++..++. .++|+++|
T Consensus 76 ---------------------------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv 120 (189)
T cd00881 76 ---------------------------------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVA 120 (189)
T ss_pred ---------------------------------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEE
Confidence 1334566789999999999999888877777777766 58999999
Q ss_pred eccCCCCccch-h----hHHHHHh---------------cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 310 VNKCESPRKGI-M----QVSEFWS---------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 310 ~NK~D~~~~~~-~----~~~~~~~---------------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
+||+|+..... . ....... ...+++++||++|.|+.++++.|.+.++
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 99999875221 1 1111111 2347899999999999999999988875
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=2.9e-17 Score=165.92 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=117.8
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccc-----------------cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIV-----------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~-----------------~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
+|+++|++|+|||||+++|+....... ....|+|.......+. +++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchH-
Confidence 489999999999999999986432211 1122445555555565 377899999999986642
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhh---------
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQT--------- 506 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~--------- 506 (666)
..+..+++.+|++++|+|++++...+...+++.+.+.++|+++++||+|+........
T Consensus 79 -------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~ 145 (237)
T cd04168 79 -------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLS 145 (237)
T ss_pred -------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHC
Confidence 2355688999999999999999998888999999999999999999999864221111
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHH
Q 005979 507 -----------------------------------------------ATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 507 -----------------------------------------------~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~ 539 (666)
.+++...+++.+.....+|++..||.++.|+..
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ 225 (237)
T cd04168 146 SDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEE 225 (237)
T ss_pred CCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHH
Confidence 111222223333334557889999999999999
Q ss_pred HHHHHHHHH
Q 005979 540 IIVAAEMVD 548 (666)
Q Consensus 540 L~~~i~~~~ 548 (666)
|++.|..++
T Consensus 226 ll~~~~~~~ 234 (237)
T cd04168 226 LLEGITKLF 234 (237)
T ss_pred HHHHHHHhc
Confidence 999998654
No 215
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=7.8e-18 Score=161.93 Aligned_cols=155 Identities=25% Similarity=0.278 Sum_probs=110.0
Q ss_pred EEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005979 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (666)
Q Consensus 168 ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (666)
++|.+|||||||+|+|++... .++.++++|.++..+...+. +..+.+|||||+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~---------------- 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRG---------------- 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCC----------------
Confidence 589999999999999999874 66788899999988888888 899999999998642211110
Q ss_pred chhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-----C-HHHH-HHHHHHHhh--------cCCCcEEEEec
Q 005979 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----T-AADE-EIADWLRKN--------YMDKFIILAVN 311 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-----~-~~d~-~i~~~l~~~--------~~~~p~ilv~N 311 (666)
+...+...+..+|++++|+|+.... . ..+. .+...+... ..++|+++|+|
T Consensus 64 ---------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 64 ---------------LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred ---------------ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 1123445678899999999998763 2 2221 222222211 13789999999
Q ss_pred cCCCCccchhhHH---HH-HhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 312 KCESPRKGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 312 K~D~~~~~~~~~~---~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
|+|+......... .. ...+..++++||.+|.|++++++.+...
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 129 KIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred chhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9998764332221 11 2234478999999999999999988754
No 216
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=3.2e-17 Score=153.92 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=104.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+||+++|.+|+|||||+|++++...... ..++++.+.....+... ....+.+|||||+..+. ..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR--------------SI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH--------------HH
Confidence 4799999999999999999997654332 33333434333334321 23578999999974421 23
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
...+++.+|++++|+|+++..+... ..|+..+... ++|+++++||+|+....... .+ .+.+... ....++
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~----~~~~~~~-~~~~~~ 139 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS-TE----EAQQFAK-ENGLLF 139 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc-HH----HHHHHHH-HcCCeE
Confidence 4557789999999999987533333 2356666654 49999999999996322211 12 2222222 246889
Q ss_pred EEEeCccCCCHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~ 545 (666)
+++||++|.|+++++..|.
T Consensus 140 ~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEecCCCCCHHHHHHHHh
Confidence 9999999999999999875
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=2.8e-17 Score=171.00 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=125.5
Q ss_pred hhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 367 ~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
.++..+.|+++|.+|+|||||+|+|++.. ..+.+....|-|+....+.+.+|..+.|.||-|+.+.-+-+ --.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~------LV~ 260 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP------LVE 260 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH------HHH
Confidence 34667899999999999999999999775 45778888889988888888778999999999998754321 222
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHH-HHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIA-ERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~i~-~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
..+.++.....||++|+|+|++++...+..... +.+.+ ..+|+|+|+||+|+..... . ...+ ....
T Consensus 261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~----~~~~----~~~~ 330 (411)
T COG2262 261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--I----LAEL----ERGS 330 (411)
T ss_pred HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--h----hhhh----hhcC
Confidence 356788888999999999999998544444433 23333 4689999999999876432 0 1111 1111
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+.+++||++|.|++.|...|.+....
T Consensus 331 -~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 331 -PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred -CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 158999999999999999999877653
No 218
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=3.8e-17 Score=158.44 Aligned_cols=159 Identities=25% Similarity=0.326 Sum_probs=110.1
Q ss_pred CCCCCCCCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhh
Q 005979 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (666)
Q Consensus 157 ~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 235 (666)
+.+....++|+|+|++|+|||||+|+|++.. ...+++.+++|.++..... + ..+.+|||||+......... ..
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~-~~-- 85 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEE-KE-- 85 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhH-HH--
Confidence 3444567899999999999999999999975 4566778888888765443 2 47999999998653221110 00
Q ss_pred hhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCC
Q 005979 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (666)
Q Consensus 236 ~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~ 315 (666)
.+...+ ..+.+....++++++|+|++.+++..+..+.+++.. .++|+++|+||+|+
T Consensus 86 ---------------------~~~~~~-~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~ 141 (179)
T TIGR03598 86 ---------------------KWQKLI-EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADK 141 (179)
T ss_pred ---------------------HHHHHH-HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 011111 122233345789999999999999988888888876 57999999999998
Q ss_pred Cccchh-----hHHHHH-hcC--CCCeeecccCCCChH
Q 005979 316 PRKGIM-----QVSEFW-SLG--FSPLPISAISGTGTG 345 (666)
Q Consensus 316 ~~~~~~-----~~~~~~-~~~--~~~i~iSa~~g~Gi~ 345 (666)
...... ...... ..+ ..++++||++|+|++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 753211 111122 222 378999999999974
No 219
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=3.8e-17 Score=168.04 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=93.2
Q ss_pred eEEEecCCCCChhHHHHHHhccCcc-----cc------------cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRT-----IV------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~-----~~------------~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
+|+++|++|+|||||+++|+..... .+ ....|+|++.....+.+ ++..+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 4899999999999999999742211 01 12448888888888874 7889999999998653
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
...+..+++.+|++++|+|+..+...++..+++.+...++|+++++||+|+..
T Consensus 78 ------------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 78 ------------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ------------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 23466788999999999999999999999999999999999999999999864
No 220
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.74 E-value=1e-17 Score=160.48 Aligned_cols=152 Identities=22% Similarity=0.194 Sum_probs=102.6
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|.+|||||||+++|.+.......+..|.++ ..+.. ++..+.+|||||..++.. ...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~----~~~~~-~~~~~~i~D~~G~~~~~~--------------~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRL-DKYEVCIFDLGGGANFRG--------------IWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE----EEEEE-CCEEEEEEECCCcHHHHH--------------HHH
Confidence 48999999999999999999763223333334432 23433 567899999999754322 234
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHH-HHHHh-cCC-CC
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDV-REKLR-ALD-WA 524 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l-~~~l~-~~~-~~ 524 (666)
.+++.||++++|+|+++..+.++.. ++..+.. .++|+++|+||+|+....... ++.+.+ .+.+. ... ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~---~i~~~~~l~~~~~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGA---DVIEYLSLEKLVNENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH---HHHHhcCcccccCCCCceE
Confidence 5889999999999998865544433 4554443 378999999999996543221 111211 11222 122 35
Q ss_pred CEEEEeCccC------CCHHHHHHHHHH
Q 005979 525 PIVYSTAIAG------QSVDKIIVAAEM 546 (666)
Q Consensus 525 ~ii~vSAk~g------~gv~~L~~~i~~ 546 (666)
+++++||++| .|+.+.|++|.+
T Consensus 139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 7888999998 899999999864
No 221
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-17 Score=165.00 Aligned_cols=168 Identities=24% Similarity=0.356 Sum_probs=128.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
...||++|.||||||||.|.++|.+.+.++....+|+....+.+.-+..++.++||||+.....-... .
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~-~---------- 140 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH-H---------- 140 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH-H----------
Confidence 46899999999999999999999999999999999999999999888999999999999864322211 0
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~- 321 (666)
+...+.+..+.++.+||+|++|+|++..-.+....+++.|++. ...|-++|+||+|...+...
T Consensus 141 ---------------l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 141 ---------------LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred ---------------HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHH
Confidence 1111334567889999999999999854444444577777665 57899999999997643110
Q ss_pred -----------------hHH-HHHhc-------------CC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 322 -----------------QVS-EFWSL-------------GF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 322 -----------------~~~-~~~~~-------------~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .|... +| .+|++||++|.|+++|.+.|....+.
T Consensus 205 l~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 205 LNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 000 11111 23 47999999999999999999987764
No 222
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.74 E-value=3e-17 Score=158.98 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=104.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|||||||++++++.. + ...+.+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~------------- 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEYSIL------------- 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEE-CCEEEEEEEEECCChHhhHHH-------------
Confidence 589999999999999999999654 3 233333443333333433 33 35789999998654221
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...++..+|++++|+|+++..+.+... ++..+.+ .+.|+|+|+||+|+...+.... +. ...+ ....+.
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~-~~~~----~~~~~~ 138 (180)
T cd04137 66 -PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST-EE-GKEL----AESWGA 138 (180)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH-HH-HHHH----HHHcCC
Confidence 223678899999999999865554443 3344433 3679999999999864322211 11 1111 122236
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|+.+++.++.+.+.
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 139 AFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999986543
No 223
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=6.8e-17 Score=159.89 Aligned_cols=160 Identities=19% Similarity=0.125 Sum_probs=104.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCc--ccccCCCcceeeeEeEEEecC--------------------------CC----
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP--------------------------EG---- 419 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~--~~~~~~~gtT~d~~~~~~~~~--------------------------~~---- 419 (666)
++|+++|+.++|||||+.+|.+... .......|.|...-...+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3689999999999999999976421 111111122222211111110 02
Q ss_pred --ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-CCHHHHHHHHHHHHhCC-cEEEEEec
Q 005979 420 --QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIVVNK 495 (666)
Q Consensus 420 --~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-~t~~d~~i~~~i~~~~~-pvIlv~NK 495 (666)
..+.||||||+.++ ...+..++..+|++++|+|++++ ...+....+..+...+. |+|+|+||
T Consensus 81 ~~~~i~~iDtPG~~~~--------------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK 146 (203)
T cd01888 81 LVRHVSFVDCPGHEIL--------------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNK 146 (203)
T ss_pred cccEEEEEECCChHHH--------------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEc
Confidence 68999999997432 34566778889999999999974 44555555655555554 79999999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHhcC--CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 496 WDTIPNKNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~l~~~l~~~--~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+|+.... ......+.+.+.+... .+.+++++||++|.|+++|++.|.+..
T Consensus 147 ~Dl~~~~---~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 147 IDLVKEE---QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred hhccCHH---HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 9996532 1122233444444332 357899999999999999999987543
No 224
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=3.1e-17 Score=161.47 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=120.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccC-CCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
+|+++|++|+|||||+|+|+|...+.... .+++|++++.+...+.+..+.||||||+.+.......+..+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~--------- 72 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKE--------- 72 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHH---------
Confidence 69999999999999999999987554443 56899999999989999999999999998754333222222
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC---CCcEEEEeccCCCCccch
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKGI 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~---~~p~ilv~NK~D~~~~~~ 320 (666)
+.+.+.......|++|||+++.+ ++..+..+++.+++.+. ..++++|+|++|......
T Consensus 73 ------------------i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 73 ------------------IVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT 133 (196)
T ss_pred ------------------HHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCc
Confidence 23333334456799999999987 89999999998877432 368899999999765321
Q ss_pred h---------hHHHH-HhcCCCCeee-----cccCCCChHHHHHHHHHHhhhhc
Q 005979 321 M---------QVSEF-WSLGFSPLPI-----SAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 321 ~---------~~~~~-~~~~~~~i~i-----Sa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
. ..... ...+-.++.. |+..+.++.+|++.|.+.++++.
T Consensus 134 ~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 134 LEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred HHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 1 01111 1112222222 56788999999999999888644
No 225
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=2e-17 Score=158.08 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=102.3
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
.|+++|.+|||||||+++|++.. +.....|.+..+. ..+. ..+..+.+|||||..++..+ ..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~~--~~i~-~~~~~l~i~Dt~G~~~~~~~--------------~~ 62 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFNS--VAIP-TQDAIMELLEIGGSQNLRKY--------------WK 62 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CcccccccCCcce--EEEe-eCCeEEEEEECCCCcchhHH--------------HH
Confidence 48999999999999999999663 3223333333332 2233 25678999999998665332 23
Q ss_pred HHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHH-HHHHhcCCCCCEEE
Q 005979 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDV-REKLRALDWAPIVY 528 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~-~i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l-~~~l~~~~~~~ii~ 528 (666)
.+++.+|++|+|+|+++..+.... .++..+.. .++|+++|+||+|+....... .+...+ ...+....+.++++
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ---EIHKELELEPIARGRRWILQG 139 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH---HHHHHhCChhhcCCCceEEEE
Confidence 478999999999999886543332 34444432 479999999999996543221 111111 12333334577899
Q ss_pred EeCcc------CCCHHHHHHHHH
Q 005979 529 STAIA------GQSVDKIIVAAE 545 (666)
Q Consensus 529 vSAk~------g~gv~~L~~~i~ 545 (666)
+||++ ++||.++|+.+.
T Consensus 140 ~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 140 TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eeecCCCChhHHHHHHHHHHHHh
Confidence 99999 999999998875
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=4.4e-17 Score=177.20 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=114.3
Q ss_pred cCCceEEEecCCCCChhHHHHHHhcc------Ccc---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
.+.++|+++|++|+|||||+++|++. ..+ ......|+|.+.....+.. ++..+.|+||||+.++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHH
Confidence 34578999999999999999999962 111 1122568999987777663 6778999999998432
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEE-EEEecccCCCCcchhhHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvI-lv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
...+...+..+|++++|+|+.++...++.+++..+...++|.+ +|+||+|+... ....+....
T Consensus 89 --------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~ 152 (396)
T PRK12735 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEM 152 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHH
Confidence 3455667889999999999999888898888888888899966 57999999742 123334445
Q ss_pred HHHHHHhcCC----CCCEEEEeCccCCC
Q 005979 513 DVREKLRALD----WAPIVYSTAIAGQS 536 (666)
Q Consensus 513 ~l~~~l~~~~----~~~ii~vSAk~g~g 536 (666)
++...+.... .++++++||++|.|
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhcccc
Confidence 5666665543 37899999999965
No 227
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=3.3e-17 Score=159.61 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=100.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|++.+.....+.+ |.......+.. ++..+.+|||||+.++.. .
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~--------------~ 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAI-GNIKFTTFDLGGHQQARR--------------L 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 4799999999999999999999764332222 22222223332 567899999999854322 1
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh--c---
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--A--- 520 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~--~--- 520 (666)
...+++.+|++++|+|+++..+.... .++..+.+ .++|+++|+||+|+...... ++ +.+.+. .
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~----i~~~l~l~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DE----LRYALGLTNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HH----HHHHcCCCcccc
Confidence 23578999999999999875332222 23333322 47999999999998542211 22 222221 1
Q ss_pred ------CCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 521 ------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 521 ------~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.....++++||++|.|+++++++|.+
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 12345999999999999999999864
No 228
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=1.9e-17 Score=164.52 Aligned_cols=144 Identities=25% Similarity=0.295 Sum_probs=105.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccccc------------------------------CCCCcccceeEEEEeecCeeEE
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGEHEFM 214 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~i~ 214 (666)
+|+|+|++|+|||||+++|++...++.. ...|+|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865433321 1268899988888889999999
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHH
Q 005979 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (666)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~ 294 (666)
+|||||+..+ ...+..++..+|++|+|+|+..+...++..+.
T Consensus 81 liDTpG~~~~--------------------------------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~ 122 (208)
T cd04166 81 IADTPGHEQY--------------------------------------TRNMVTGASTADLAILLVDARKGVLEQTRRHS 122 (208)
T ss_pred EEECCcHHHH--------------------------------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHH
Confidence 9999998531 12234567899999999999998877777766
Q ss_pred HHHHhhcCCCcEEEEeccCCCCccchh-------hHHH-HHhcCC---CCeeecccCCCChHHH
Q 005979 295 DWLRKNYMDKFIILAVNKCESPRKGIM-------QVSE-FWSLGF---SPLPISAISGTGTGEL 347 (666)
Q Consensus 295 ~~l~~~~~~~p~ilv~NK~D~~~~~~~-------~~~~-~~~~~~---~~i~iSa~~g~Gi~eL 347 (666)
.++... ..+++|+|+||+|+...... .... +..+++ +++++||++|.|+.+.
T Consensus 123 ~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 123 YILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 666552 12457889999998642211 1111 123454 4799999999999854
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.8e-17 Score=175.35 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=113.9
Q ss_pred cCCceEEEecCCCCChhHHHHHHhcc------Ccc---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
.+.++|+++|++++|||||+++|++. ... ......|+|++.....+.. ++..+.||||||+.+|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 34578999999999999999999842 111 1122369999988777753 6678999999998654
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEE-EEEecccCCCCcchhhHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvI-lv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
...+...+..+|++++|+|+.++...++.+++..+...++|.+ +|+||+|+.+.. ...+...+
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~~ 152 (394)
T TIGR00485 89 --------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM 152 (394)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHHH
Confidence 2344556788999999999999999999999999988899866 689999997532 23333445
Q ss_pred HHHHHHhcCCC----CCEEEEeCccCC
Q 005979 513 DVREKLRALDW----APIVYSTAIAGQ 535 (666)
Q Consensus 513 ~l~~~l~~~~~----~~ii~vSAk~g~ 535 (666)
++.+.+....+ +|++++||++|.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 56666665543 899999999985
No 230
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1.4e-16 Score=156.40 Aligned_cols=167 Identities=23% Similarity=0.285 Sum_probs=117.1
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 160 EHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 160 ~~~~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
....++|+++|++|+|||||+|+|++.. .+.+++.+|+|+...... + +.++.+|||||+........ ..+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~-~~~----- 91 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKE-EKE----- 91 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCch-HHH-----
Confidence 3456899999999999999999999875 466777888887765533 2 47899999999864221111 000
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
.+.. +.....+....++++++|+|+..+.+..+..+.+++.. .+.|+++++||+|+...
T Consensus 92 ------------------~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 92 ------------------KWQK-LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKK 150 (196)
T ss_pred ------------------HHHH-HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCH
Confidence 0111 11122233345678999999988888777777788765 47899999999998764
Q ss_pred chhh-----HHHHHh-cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIMQ-----VSEFWS-LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~~-----~~~~~~-~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
...+ ...... ....++++||++|.|+.++++.|.+.+.
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3221 111222 2457899999999999999999987765
No 231
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=5.4e-17 Score=185.26 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=117.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC---CCceEEEEEcCCCccccccccCCchhhH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~e~ 445 (666)
.+.+.|+++|++|+|||||+++|++... .....+|+|.+.....+.+. .+..+.||||||+..|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~---------- 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS---------- 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH----------
Confidence 4568999999999999999999997643 33445667765433332221 357899999999855422
Q ss_pred HHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHH--Hh-cC-
Q 005979 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--LR-AL- 521 (666)
Q Consensus 446 ~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~--l~-~~- 521 (666)
...++++.+|++|||+|+.++...+....+..+...++|+|+|+||+|+..... +.....+... +. ..
T Consensus 311 ----mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~----e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 311 ----MRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANT----ERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred ----HHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCH----HHHHHHHHHhccchHhhC
Confidence 233578899999999999999888888888888888999999999999965321 1122222111 11 11
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+|++++||++|.|+++|++.|....
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 247899999999999999999987654
No 232
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=8e-17 Score=176.65 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=120.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhcc------Cccc---------ccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~------~~~~---------~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~ 434 (666)
..++|+++|++++|||||+++|++. .... .....|+|++.....+.. ++.++.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch-
Confidence 3578999999999999999999732 1111 122369999998888764 6778999999998653
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHH
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
+..+...+..+|++++|+|+.+++..++.+++..+...++| +|+|+||||+.+.. ...+.+.++
T Consensus 138 -------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~~ 202 (447)
T PLN03127 138 -------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEME 202 (447)
T ss_pred -------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHHH
Confidence 23444566789999999999999999999999999999999 57899999997522 233444445
Q ss_pred HHHHHhcCC----CCCEEEEeCc---cCCC-------HHHHHHHHHHHH
Q 005979 514 VREKLRALD----WAPIVYSTAI---AGQS-------VDKIIVAAEMVD 548 (666)
Q Consensus 514 l~~~l~~~~----~~~ii~vSAk---~g~g-------v~~L~~~i~~~~ 548 (666)
+.+.+.... .+|++++||. +|.| +..|++.+....
T Consensus 203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 656665433 3789999886 4555 566777666543
No 233
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.73 E-value=2.8e-17 Score=157.51 Aligned_cols=143 Identities=23% Similarity=0.335 Sum_probs=98.8
Q ss_pred cEEEEEecCCCCCCHHHHHHHHH--HHhhcCCCcEEEEeccCCCCccchhh-HHHHHhcCCCCee---------------
Q 005979 274 CVIIFLVDGQAGLTAADEEIADW--LRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGFSPLP--------------- 335 (666)
Q Consensus 274 d~il~VvD~~~~~~~~d~~i~~~--l~~~~~~~p~ilv~NK~D~~~~~~~~-~~~~~~~~~~~i~--------------- 335 (666)
|+|++|+|++.++...+..+.+. +.. .++|+++|+||+|+.+..... ...++...+..+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQK 78 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhc
Confidence 79999999999888777777777 333 478999999999997644322 2222322222221
Q ss_pred -----------ecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCc
Q 005979 336 -----------ISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG 404 (666)
Q Consensus 336 -----------iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g 404 (666)
+|+.++.|...|+..+.+..... ......+++++|.||||||||+|+|++...+.+++.||
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg 150 (172)
T cd04178 79 SVKVEAASADLLRSSVCFGADCLLKLLKNYSRNK--------DIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPG 150 (172)
T ss_pred ccccchhhhhhhhhccccCHHHHHHHHHHHhhcc--------ccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC
Confidence 23333444445544443322211 11234799999999999999999999988889999999
Q ss_pred ceeeeEeEEEecCCCceEEEEEcCCC
Q 005979 405 TTRDAIDTEFTGPEGQKFRLIDTAGI 430 (666)
Q Consensus 405 tT~d~~~~~~~~~~~~~~~liDTpG~ 430 (666)
+|+......+ +..+.|+||||+
T Consensus 151 ~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 151 VTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred eEcceEEEEe----CCCEEEEECcCC
Confidence 9998765443 246899999995
No 234
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.3e-17 Score=146.21 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=114.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC-ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG-QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..|+.++|.+.+||||++-+.++.. +...-+.++..|.....+...+. .++++|||+|+++++.+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti------------- 86 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI------------- 86 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH-------------
Confidence 4699999999999999999999764 44455555666655444432222 27899999999775443
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
+-.++|+|+++|+++|+++..+....+ |..+|.. .+.|+|+|+||||+.+++.... + . ...+.+..+..
T Consensus 87 -TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~-e----~-g~~l~~~LGfe 159 (193)
T KOG0093|consen 87 -TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH-E----R-GRQLADQLGFE 159 (193)
T ss_pred -HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH-H----H-HHHHHHHhChH
Confidence 334899999999999999876655554 4444443 3799999999999977654332 1 1 12233333568
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++|||.+.||.++|..+.....
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 160 FFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred HhhhcccccccHHHHHHHHHHHHH
Confidence 999999999999999999886653
No 235
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=7.7e-17 Score=158.36 Aligned_cols=144 Identities=20% Similarity=0.249 Sum_probs=103.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccccc---------------CCCCcccceeEEEEeecCeeEEEEecCCcccccCCc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 228 (666)
.+|+++|++|||||||+++|++....... ...|+|.......+.+.+..+.+|||||+..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 47999999999999999999963211111 12466666666667778889999999998642
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEE
Q 005979 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (666)
Q Consensus 229 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~il 308 (666)
......++..+|++++|+|+..+.......++..+.. .+.|+++
T Consensus 79 ----------------------------------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~ii 122 (194)
T cd01891 79 ----------------------------------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIV 122 (194)
T ss_pred ----------------------------------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEE
Confidence 1334467789999999999988766666666665544 4789999
Q ss_pred EeccCCCCccchh----hHHHHH--------hcCCCCeeecccCCCChHHH
Q 005979 309 AVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGTGTGEL 347 (666)
Q Consensus 309 v~NK~D~~~~~~~----~~~~~~--------~~~~~~i~iSa~~g~Gi~eL 347 (666)
|+||+|+...... ....++ ..+++++++||++|.|+.++
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 9999998643221 112222 12567899999999777443
No 236
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=3.9e-18 Score=152.74 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=113.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+||+++|..-||||||+-+++.. .+......+.-..++...+...+ ...+.+|||+|+.+|..+.+.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~En-kFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI--------- 81 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVEN-KFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI--------- 81 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHh-hcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce---------
Confidence 3579999999999999999999843 34333222222222223333322 237899999999998776542
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
|+|+++++|+|+|+++.-++|..+ |+..++.. .+.++||+||+||.+.+.....+ .+..+..-++
T Consensus 82 -----YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qe------Ae~YAesvGA 150 (218)
T KOG0088|consen 82 -----YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQE------AEAYAESVGA 150 (218)
T ss_pred -----EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHH------HHHHHHhhch
Confidence 889999999999999988887765 66776664 46789999999997655443222 2344455578
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
.++.+||+.+.||.+||..+...
T Consensus 151 ~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 151 LYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hheecccccccCHHHHHHHHHHH
Confidence 89999999999999999988654
No 237
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.9e-17 Score=173.32 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=126.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec---CeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
+.|.|+++||.+.|||||+++|++.+ .......|+|++...+.+.++ ...++++||||+..|...+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR---------- 72 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR---------- 72 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH----------
Confidence 46899999999999999999999998 445677899999999988884 4789999999998654332
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
.+..+-+|++++|||+.+|+.+++.+..+.++. .+.|+++++||+|+...
T Consensus 73 ----------------------------aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 73 ----------------------------ARGASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEA 122 (509)
T ss_pred ----------------------------hcCCccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCC
Confidence 145577999999999999999999999999988 69999999999999865
Q ss_pred chhh-HHHHHhcCC---------CCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIMQ-VSEFWSLGF---------SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~~-~~~~~~~~~---------~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.... ..+....|+ .++++||++|.|+++|++.|.-.-+
T Consensus 123 np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 123 NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 4322 223333343 4799999999999999998865443
No 238
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=7.6e-17 Score=161.41 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=108.9
Q ss_pred eEEEecCCCCChhHHHHHHhccCccc-------------ccCCCcceeeeE------------------------eEEEe
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTI-------------VSPISGTTRDAI------------------------DTEFT 415 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~-------------~~~~~gtT~d~~------------------------~~~~~ 415 (666)
||+++|+.++|||||+++|....... ..-..|.|.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998422100 000012221100 01122
Q ss_pred cCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHh--hCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEE
Q 005979 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIR--RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493 (666)
Q Consensus 416 ~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~--~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~ 493 (666)
..++.+.++||||+.++. ..+...+. .+|++++|+|+..+.+.++..++.++...++|+++|+
T Consensus 81 -~~~~~i~liDtpG~~~~~--------------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvv 145 (224)
T cd04165 81 -KSSKLVTFIDLAGHERYL--------------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVV 145 (224)
T ss_pred -eCCcEEEEEECCCcHHHH--------------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 346789999999986542 23344453 6899999999999999999999999999999999999
Q ss_pred ecccCCCCcchhhHHHHHHHHHHHHh-------------------------cCCCCCEEEEeCccCCCHHHHHHHHH
Q 005979 494 NKWDTIPNKNQQTATYYEQDVREKLR-------------------------ALDWAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~l~~~l~-------------------------~~~~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
||+|+.+.. ........+.+.+. ....+|+|.+||.+|.|+++|...|.
T Consensus 146 NK~D~~~~~---~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 146 TKIDLAPAN---ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ECccccCHH---HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 999986532 23333444444443 12246999999999999999988775
No 239
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.73 E-value=6.4e-17 Score=183.26 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=115.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc--------cc------CCCcceeeeEeEEEecC--CC--ceEEEEEcCCCcc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--------VS------PISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRK 432 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~--------~~------~~~gtT~d~~~~~~~~~--~~--~~~~liDTpG~~~ 432 (666)
.++|+++|++++|||||+++|+...... +. ...|+|.+.....+.+. ++ ..++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998643211 11 12377777655444431 23 4789999999976
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
|. ..+.++++.||++|+|+|++++.+.++...+..+.+.++|+|+|+||+|+..... +...+
T Consensus 83 F~--------------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~----~~~~~ 144 (595)
T TIGR01393 83 FS--------------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP----ERVKK 144 (595)
T ss_pred HH--------------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH----HHHHH
Confidence 52 2345678999999999999999998888776666677999999999999864321 12223
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++.+.+. ....+++++||++|.|+++||+.|.+...
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 3333332 22235899999999999999999987654
No 240
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=2.6e-18 Score=149.55 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=116.6
Q ss_pred EEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 375 ~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+++|.+++|||.|+-++-......-.-+..+.+|.....+.. +++ ++++|||+|+.+|+++ +.
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsv--------------t~ 65 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSV--------------TH 65 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhh--------------hH
Confidence 368999999999987765332222223345556666555554 443 7899999999888665 34
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHhC---CcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCR-IAERIEQEG---KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~~---~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
.|+|.||.+++++|+.+.-++++.+ |+.+|.+.+ ..+.+++||+|+..++.... +-.+.+++..++|+++
T Consensus 66 ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~------ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 66 AYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR------DDGEKLAEAYGIPFME 139 (192)
T ss_pred hhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcccc------chHHHHHHHHCCCcee
Confidence 5899999999999999988887766 778888764 56889999999976544332 2245566666899999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhc
Q 005979 529 STAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+|||+|.||+..|-.|.+.....
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHh
Confidence 99999999999999998766543
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=7.5e-17 Score=175.28 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=115.8
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccC------cc---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGED------RT---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~------~~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
...++|+++|++++|||||+++|++.. .. ......|+|++.....+.. ++..+.++||||+.++
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHH
Confidence 345789999999999999999999621 10 1112569999988777763 6778999999998543
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEE-EEEecccCCCCcchhhHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvI-lv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
...+...+..+|++++|+|+..++..++..++..+...++|++ +++||+|+... ....+....
T Consensus 89 --------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~--~~~~~~~~~ 152 (396)
T PRK00049 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEM 152 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch--HHHHHHHHH
Confidence 3345567789999999999999999999999999999999976 58999999742 223344455
Q ss_pred HHHHHHhcCC----CCCEEEEeCccCCC
Q 005979 513 DVREKLRALD----WAPIVYSTAIAGQS 536 (666)
Q Consensus 513 ~l~~~l~~~~----~~~ii~vSAk~g~g 536 (666)
++...+...+ ++|++++||++|.+
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccC
Confidence 6666666543 48999999999863
No 242
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.73 E-value=7.8e-17 Score=181.25 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=110.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCc-ceeeeEeEEEec--C---------------CCceEEEEEcCCCc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEFTG--P---------------EGQKFRLIDTAGIR 431 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-tT~d~~~~~~~~--~---------------~~~~~~liDTpG~~ 431 (666)
+.+.|+++|++|+|||||+|+|++... ....+| +|++.-...+.. . ....+.||||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 357899999999999999999997742 233333 444321111110 0 01248999999986
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcch----hhH
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ----QTA 507 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~----~~~ 507 (666)
++..+ ...+++.+|++++|+|++++.+.++...+..+...++|+|+|+||+|+...... ...
T Consensus 81 ~f~~l--------------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 81 AFTNL--------------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred hHHHH--------------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence 55321 234678999999999999999899988888888889999999999999642110 000
Q ss_pred -----------HHH---HHHHHHHHh--------------cCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 508 -----------TYY---EQDVREKLR--------------ALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 508 -----------~~~---~~~l~~~l~--------------~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+ ...+...+. .....+++++||++|+|+++|+.+|..+.
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 000111111 12357999999999999999999886543
No 243
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.73 E-value=1.3e-16 Score=150.58 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=105.1
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
||+++|.+|||||||++++++.. ....+..++.+.....+...+ ...+.+|||||+.++. ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS--------------AMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH--------------HHH
Confidence 68999999999999999999765 344555555565555554421 3478999999975421 122
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
..+++.+|++++|+|+++..+..+.. ++..+.. .++|+++|+||+|+....... . +......... +.++
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~----~~~~~~~~~~-~~~~ 138 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS-K----EEGKALAKEW-GCPF 138 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-H----HHHHHHHHHc-CCcE
Confidence 34678999999999998765444433 4444433 369999999999997632221 1 1122222222 3789
Q ss_pred EEEeCccCCCHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~ 546 (666)
+++||++|.|++++++.|.+
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred EEeccCCCCCHHHHHHHHHh
Confidence 99999999999999999874
No 244
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=7.7e-17 Score=157.58 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=101.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|||||||++++.+....... + |.......+.. ++..+.+|||||+.++. ..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~--~--T~~~~~~~i~~-~~~~~~l~D~~G~~~~~--------------~~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV--P--TLHPTSEELTI-GNIKFKTFDLGGHEQAR--------------RL 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC--C--ccCcceEEEEE-CCEEEEEEECCCCHHHH--------------HH
Confidence 579999999999999999999976532222 2 22222234443 67789999999975431 12
Q ss_pred HHHHHhhCCeEEEEeeccccCCHH-HHHHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-----
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQ-DCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~-d~~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~----- 520 (666)
...+++.+|++++|+|+++..+.. ...++..+.. .+.|+++++||+|+...... + ++.+.+..
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~----~~~~~~~~~~~~~ 152 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---E----ELRQALGLYGTTT 152 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---H----HHHHHhCcccccc
Confidence 345779999999999998753322 2234433332 46999999999998642111 1 22222221
Q ss_pred ----------CCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 521 ----------LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 521 ----------~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
....+++++||++|+|++++|++|.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 153 GKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 123569999999999999999999753
No 245
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=5e-17 Score=145.86 Aligned_cols=116 Identities=38% Similarity=0.609 Sum_probs=95.1
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|.+|+|||||+|+|++.....++..+++|+......+.+ ++..+.++||||+.+..... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~-----~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQD-----NDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHH-----HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhh-----HHHHHHHHHH
Confidence 68999999999999999999977778999999999997766664 77888999999987542211 1111345577
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEec
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK 495 (666)
+.+..+|++++|+|+.++....+..+++++. .++|+++|+||
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 7889999999999998866677888889886 89999999998
No 246
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=9.1e-17 Score=152.32 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=107.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|++|||||||+|+|++.+. .....++.+.+.....+.+++ ..+.+|||||....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~------------------ 62 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF------------------ 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 699999999999999999999874 345667777777776666666 45899999996431
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHH-hhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLR-KNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~-~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
.......+..+|++++|+|...+-+..+. .++..+. ....+.|+++|+||+|+.....
T Consensus 63 --------------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 63 --------------------RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred --------------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 12233557889999999999865333321 2333332 2223589999999999854321
Q ss_pred ---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 321 ---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.....+ ...+..++++||.+|.|++++++.|.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 123 VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 111222 2346788999999999999999999764
No 247
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.4e-17 Score=144.58 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=113.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..+|++++|..|.|||.|+.+|+... +.-.....+..+.-...+.. +++ ++++|||+|+.+|+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~k-fkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSV---------- 74 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENK-FKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSV---------- 74 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhh-hcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHH----------
Confidence 346799999999999999999999543 33222233344444444443 444 7899999999877553
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
+..|+|+|-++++|+|++...+...+. |+.-++.. ++-+|+++||.||-..++....+ ...+.+.+
T Consensus 75 ----tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflE------As~FaqEn 144 (214)
T KOG0086|consen 75 ----TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE------ASRFAQEN 144 (214)
T ss_pred ----HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHH------HHhhhccc
Confidence 456899999999999999887766654 55544443 56688999999997655443222 23455556
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..-++++||++|.||++.|-...+.
T Consensus 145 el~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 145 ELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred ceeeeeecccccccHHHHHHHHHHH
Confidence 6789999999999999998777644
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=5.3e-17 Score=162.32 Aligned_cols=161 Identities=23% Similarity=0.291 Sum_probs=123.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee-EEEEecCCcccccCCchhhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
+..+.|++||.||+|||||+|+|...+ ..+.+++++|..+..+...+++.. +.+-|.||+.........+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl-------- 264 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL-------- 264 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCcc--------
Confidence 345789999999999999999999987 688999999999999999888754 9999999998765555432
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC--CCHHH-HH-H---HHHHHhhcCCCcEEEEecc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAAD-EE-I---ADWLRKNYMDKFIILAVNK 312 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~--~~~~d-~~-i---~~~l~~~~~~~p~ilv~NK 312 (666)
-..+++.+++|++++||+|.+.+ .++.+ .. + ++...+...++|.++|+||
T Consensus 265 -----------------------G~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNK 321 (366)
T KOG1489|consen 265 -----------------------GYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANK 321 (366)
T ss_pred -----------------------cHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEec
Confidence 25678999999999999999876 23322 11 2 2233344578999999999
Q ss_pred CCCCccchhhHHHHH-hcCC-CCeeecccCCCChHHHHHHHHH
Q 005979 313 CESPRKGIMQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 313 ~D~~~~~~~~~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
+|..+.+.....++. ++.- .++++||++++|+.+|+..|..
T Consensus 322 iD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 322 IDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 998644332222332 2332 4899999999999999988754
No 249
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=1e-16 Score=154.10 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=100.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||++++.+.......+..|.+.. .+.. ++..+.+|||||..++. ..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~----~i~~-~~~~~~~~D~~G~~~~~--------------~~ 74 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK----TVQS-DGFKLNVWDIGGQRAIR--------------PY 74 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE----EEEE-CCEEEEEEECCCCHHHH--------------HH
Confidence 57999999999999999999998654334444444332 2222 57789999999975431 12
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHH-HHHHHHH----HHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC--CC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERI----EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DW 523 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d-~~i~~~i----~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~--~~ 523 (666)
...+++.+|++++|+|+++..+..+ ..++..+ ...++|+++++||+|+...... +.+.+.+. +... ..
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~i~~~l~--~~~~~~~~ 149 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA---EEIAEALN--LHDLRDRT 149 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH---HHHHHHcC--CcccCCCe
Confidence 3346789999999999987433222 1222222 2347999999999998653221 11222111 1111 12
Q ss_pred CCEEEEeCccCCCHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.+++++||++|.|++++|++|.+
T Consensus 150 ~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCCCHHHHHHHHhc
Confidence 35789999999999999999863
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=4.4e-17 Score=146.24 Aligned_cols=116 Identities=41% Similarity=0.582 Sum_probs=94.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|+|||||+|+|++.+.+.++..+++|++...+...+++..+.++||||+........
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~--------------- 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN--------------- 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH---------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH---------------
Confidence 58999999999999999999987788999999999998888888999999999999975221110
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEecc
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK 312 (666)
... ....+.+.+..+|+++||+|+..+....+..++++|+ .++|+++|+||
T Consensus 66 -------------~~~-~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 66 -------------DGK-EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp -------------HHH-HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred -------------HHH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 001 2234666678999999999988755666778888885 48999999998
No 251
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.72 E-value=1e-16 Score=150.74 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=100.3
Q ss_pred EEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHH
Q 005979 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (666)
Q Consensus 374 I~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (666)
|+++|.+|||||||+|+|.+.. +.....+++..+.. .+.. ++..+.+|||||+.++.. ....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~--~~~~-~~~~~~~~D~~g~~~~~~--------------~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMR--KVTK-GNVTLKVWDLGGQPRFRS--------------MWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceE--EEEE-CCEEEEEEECCCCHhHHH--------------HHHH
Confidence 7999999999999999999764 33444444444333 2332 457899999999754321 2345
Q ss_pred HHhhCCeEEEEeeccccCCHHH-HHHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 454 AIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 454 ~i~~advvllViDa~~~~t~~d-~~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
+++.+|++++|+|+++..+... ..++..+.. .++|+++|+||+|+...... ......+..........++++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEE
Confidence 6789999999999987433222 223333322 47899999999998654221 111111111111123467999
Q ss_pred EeCccCCCHHHHHHHHHH
Q 005979 529 STAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~ 546 (666)
+||++|.|+++++++|.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999999864
No 252
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=2.8e-16 Score=149.25 Aligned_cols=164 Identities=25% Similarity=0.314 Sum_probs=113.1
Q ss_pred eEEEecCCCCChhHHHHHHhc-cCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH---H
Q 005979 373 AIAIVGRPNVGKSSILNALVG-EDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS---V 448 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~-~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~---~ 448 (666)
.|+++|.+|+|||||+|+|++ ......+..+++|........ ...+.+|||||+.....- ....... .
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~D~~g~~~~~~~----~~~~~~~~~~~ 72 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV----NDKFRLVDLPGYGYAKVS----KEVKEKWGKLI 72 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc----cCeEEEecCCCccccccC----HHHHHHHHHHH
Confidence 389999999999999999994 333446666677765533222 238999999998543110 0011111 1
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh-cCCCCCEE
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-ALDWAPIV 527 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~-~~~~~~ii 527 (666)
..........+++++|+|.....+..+..+++++...+.|+++|+||+|+...... ......+...+. .....+++
T Consensus 73 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 149 (170)
T cd01876 73 EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSEL---AKALKEIKKELKLFEIDPPII 149 (170)
T ss_pred HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHH---HHHHHHHHHHHHhccCCCceE
Confidence 22222334568899999998877777778888888889999999999999654221 122333344443 34567899
Q ss_pred EEeCccCCCHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~ 547 (666)
++||+++.|+.++++.|.+.
T Consensus 150 ~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 253
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=1e-16 Score=157.02 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCC------cc---------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGN------RA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~------~~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 228 (666)
.+|+++||+|+|||||+++|++.. .. ......|+|.+.....+.+++.++.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 469999999999999999998641 00 1112457888877767777888999999999853
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005979 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (666)
Q Consensus 229 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~i 307 (666)
+...+..++..+|++++|+|+..+...++.+++.++.. .++| +|
T Consensus 78 ---------------------------------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iI 122 (195)
T cd01884 78 ---------------------------------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIV 122 (195)
T ss_pred ---------------------------------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEE
Confidence 12445677889999999999999999999999998887 4666 78
Q ss_pred EEeccCCCCccch-hh-----HHHH-HhcC-----CCCeeecccCCCCh
Q 005979 308 LAVNKCESPRKGI-MQ-----VSEF-WSLG-----FSPLPISAISGTGT 344 (666)
Q Consensus 308 lv~NK~D~~~~~~-~~-----~~~~-~~~~-----~~~i~iSa~~g~Gi 344 (666)
+|+||+|+..... .. ...+ ...| .+++++||.+|.++
T Consensus 123 vviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 123 VFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 9999999864221 11 1111 1233 36899999999985
No 254
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=1.5e-16 Score=156.50 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=121.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccC-CCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~-~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
++|+++|+||+|||||+|+|+|...+.... .+++|++........ +|..+.||||||+.+.... ...........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~---~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVS---PEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCC---hHHHHHHHHHH
Confidence 479999999999999999999988765553 457888877666654 7889999999999875321 01223333333
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-C----CcEEEEEecccCCCCcchhhH-HHHHHHHHHHHhcCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-G----KGCLIVVNKWDTIPNKNQQTA-TYYEQDVREKLRALDWA 524 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-~----~pvIlv~NK~Dl~~~~~~~~~-~~~~~~l~~~l~~~~~~ 524 (666)
...+..++|++|+|+|+.+ ++..+..+++.+.+. | .++|+|+|++|.......... ......++..+..+++.
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 4444578999999999987 899999999888774 3 789999999998764322111 11113344445554433
Q ss_pred CEEEE-----eCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYS-----TAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~v-----SAk~g~gv~~L~~~i~~~~~~ 550 (666)
++.. |+..+.++.+|++.|.+...+
T Consensus 156 -~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 -YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred -EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2233 356788899999999888765
No 255
>PRK12289 GTPase RsgA; Reviewed
Probab=99.72 E-value=7.9e-17 Score=170.67 Aligned_cols=144 Identities=27% Similarity=0.370 Sum_probs=107.0
Q ss_pred HHHHhccEEEEEecCCCC-CCHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccchh-hH-HHHHhcCCCCeeecccCCCC
Q 005979 268 AAIEESCVIIFLVDGQAG-LTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM-QV-SEFWSLGFSPLPISAISGTG 343 (666)
Q Consensus 268 ~~i~~ad~il~VvD~~~~-~~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~~-~~-~~~~~~~~~~i~iSa~~g~G 343 (666)
.++.++|.+++|+|+..+ +... .+.++|.. ...+.|+++|+||+|+...... .. ..+..+|+.++++||.+|.|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~--~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPW--QLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHH--HHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 457899999999998754 2332 23333332 1257899999999999754322 11 22346788999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCc-------ceeeeEeEEEec
Q 005979 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (666)
Q Consensus 344 i~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-------tT~d~~~~~~~~ 416 (666)
+++|++.+.. ..++++|.||||||||+|+|++.....++..++ ||++.....+
T Consensus 163 I~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l-- 222 (352)
T PRK12289 163 LEALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL-- 222 (352)
T ss_pred HHHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--
Confidence 9999888731 137999999999999999999988888888888 8888754433
Q ss_pred CCCceEEEEEcCCCccccc
Q 005979 417 PEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~ 435 (666)
.+|. .|+||||+..+..
T Consensus 223 ~~g~--~liDTPG~~~~~l 239 (352)
T PRK12289 223 PNGG--LLADTPGFNQPDL 239 (352)
T ss_pred CCCc--EEEeCCCcccccc
Confidence 3333 8999999977643
No 256
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.72 E-value=8.9e-17 Score=185.13 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=120.7
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 160 ~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..+.|+|+++||+|+|||||+++|++.+. .....+|+|.+.....+.+++..+.+|||||+..+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------------- 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------------- 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccch--------------
Confidence 34568999999999999999999998763 345677889888888888888999999999997532
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
....+.+..+|++|+|+|+.++..++..+.+..+.. .+.|+|+|+||+|+....
T Consensus 352 ------------------------~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 352 ------------------------AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGAN 405 (787)
T ss_pred ------------------------hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccC
Confidence 122356788999999999999998988888887766 589999999999986532
Q ss_pred hhhH-HHHH-------hcC--CCCeeecccCCCChHHHHHHHHH
Q 005979 320 IMQV-SEFW-------SLG--FSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~~~~-~~~~-------~~~--~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
.... .++. .++ ++++++||++|.|+++|++.|..
T Consensus 406 ~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 2111 1111 112 47899999999999999999875
No 257
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.72 E-value=1.4e-16 Score=160.79 Aligned_cols=156 Identities=23% Similarity=0.222 Sum_probs=114.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|+|||||+|+|+|.. ..+..++++|.++..+.+.+++..+++|||||+........
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~--------------- 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK--------------- 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch---------------
Confidence 68999999999999999999986 55788999999999999899999999999999865322111
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHH---------------------------
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL--------------------------- 297 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l--------------------------- 297 (666)
.+..++...++++|++++|+|+..... +...+.+.|
T Consensus 66 ----------------~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~ 128 (233)
T cd01896 66 ----------------GRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINIT 128 (233)
T ss_pred ----------------hHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEe
Confidence 012445667889999999999865322 111122222
Q ss_pred -----------------Hh-------------------------hcCCCcEEEEeccCCCCccchhhHHHHHhcCCCCee
Q 005979 298 -----------------RK-------------------------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLP 335 (666)
Q Consensus 298 -----------------~~-------------------------~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~ 335 (666)
++ +....|+++|+||+|+....... .+ .....+++
T Consensus 129 ~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~--~~-~~~~~~~~ 205 (233)
T cd01896 129 STVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD--LL-ARQPNSVV 205 (233)
T ss_pred ccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH--HH-hcCCCEEE
Confidence 11 11235899999999987644322 22 22346899
Q ss_pred ecccCCCChHHHHHHHHHHhh
Q 005979 336 ISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 336 iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
+||.+|.|+++|++.|.+.+.
T Consensus 206 ~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 206 ISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EcCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999988765
No 258
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.72 E-value=8.6e-17 Score=152.76 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=109.6
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
||+++|.++||||||+++|.+.. +.....+....+.....+.. ++. .+.+|||+|..++..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~-------------- 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSL-------------- 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHH--------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccccc-ccccccccccccccccccccc--------------
Confidence 79999999999999999999764 33333333335666666654 343 6899999998554211
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
....++.+|++++|+|.++..+.+... |+..+... +.|++||+||.|+.+.+.... ++..+.....+ .++
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~-----~~~~~~~~~~~-~~~ 138 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV-----EEAQEFAKELG-VPY 138 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH-----HHHHHHHHHTT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchh-----hHHHHHHHHhC-CEE
Confidence 123689999999999999876655554 55655553 479999999999976333322 12223333344 899
Q ss_pred EEEeCccCCCHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++||++|.||.++|..+.+.+
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987654
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=1.8e-16 Score=174.71 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=118.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc---------------ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR---------------TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~ 434 (666)
..++|+++|++++|||||+++|++... .......|+|.+.....+.. ++..+.||||||+.++
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f- 157 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY- 157 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH-
Confidence 357899999999999999999995221 11233458999888777764 7789999999998553
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHH
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
...+...+..+|++++|+|+.++...+..+++..+...++| +|+++||+|+.+. ....+.+.++
T Consensus 158 -------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~ 222 (478)
T PLN03126 158 -------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVELE 222 (478)
T ss_pred -------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHHHH
Confidence 34556778899999999999999999999999999999999 7889999999753 2334555566
Q ss_pred HHHHHhcC----CCCCEEEEeCccCCCH
Q 005979 514 VREKLRAL----DWAPIVYSTAIAGQSV 537 (666)
Q Consensus 514 l~~~l~~~----~~~~ii~vSAk~g~gv 537 (666)
+...+... .++|++++||.+|.++
T Consensus 223 i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 223 VRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHhcCCCcCcceEEEEEccccccc
Confidence 77777654 3579999999998654
No 260
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=8.5e-17 Score=177.03 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=112.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc------------------------------ccCCCcceeeeEeEEEecCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 419 (666)
..++|+++|++++|||||+++|+...... .....|+|+|.....+.. ++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence 45789999999999999999998532111 112448999998888774 77
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc---CCHHHHHHHHHHHHhC-CcEEEEEec
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC---ITEQDCRIAERIEQEG-KGCLIVVNK 495 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~---~t~~d~~i~~~i~~~~-~pvIlv~NK 495 (666)
..+.||||||+.++ ...+..+++.+|++++|+|++++ ...+....+..+...+ .|+|+|+||
T Consensus 85 ~~i~iiDtpGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK 150 (426)
T TIGR00483 85 YEVTIVDCPGHRDF--------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINK 150 (426)
T ss_pred eEEEEEECCCHHHH--------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEC
Confidence 89999999998543 23345567899999999999988 4444444444444455 469999999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHHH
Q 005979 496 WDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIV 542 (666)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~~ 542 (666)
+|+..... ...+...+++.+.+...+ ..+++++||++|.|+.+++.
T Consensus 151 ~Dl~~~~~-~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 151 MDSVNYDE-EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred hhccCccH-HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 99974222 233344555555555443 37899999999999988654
No 261
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=6.8e-17 Score=161.58 Aligned_cols=159 Identities=22% Similarity=0.246 Sum_probs=121.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
..|++||.||+|||||+|+|.... ..+.+++.||..+....+.+.+...+.+-|.||+.+-.++ ..-.....
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~-------nkGlG~~F 268 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM-------NKGLGYKF 268 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccc-------cCcccHHH
Confidence 468999999999999999999775 4899999999999888877645556999999999875444 33445678
Q ss_pred HHHHhhCCeEEEEeecccc---CCHHHHHH-HHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 452 FRAIRRSDVVALVIEAMAC---ITEQDCRI-AERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~---~t~~d~~i-~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
++++++|++++||+|.+.+ -..++.++ +.++..+ .+|.++|+||+|+.+.+. .....+.+. ..
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-----~~l~~L~~~---lq 340 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-----NLLSSLAKR---LQ 340 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-----HHHHHHHHH---cC
Confidence 8999999999999999876 33444443 3444432 689999999999953211 112333333 33
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
+..++++||++|+|+.+|++.+..
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhh
Confidence 446999999999999999988764
No 262
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=1.2e-16 Score=180.20 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=116.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe-eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
+.|+|+++|++|+|||||+++|++.+. .....+|+|.+.....+.+.+. .+.+|||||+..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------------- 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------------- 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------------
Confidence 468999999999999999999998763 3455678898887777777554 89999999997532
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
....+.+..+|++++|+|+.++..++..+.++.++. .+.|+++++||+|+.....
T Consensus 150 -----------------------~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~ 204 (587)
T TIGR00487 150 -----------------------SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANP 204 (587)
T ss_pred -----------------------hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCH
Confidence 122356788999999999999998888888777765 5789999999999865322
Q ss_pred hhHHH-HHhcC---------CCCeeecccCCCChHHHHHHHHH
Q 005979 321 MQVSE-FWSLG---------FSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 321 ~~~~~-~~~~~---------~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
..... +...+ .+++++||++|.|+++|++.|..
T Consensus 205 e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 205 DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 11111 11111 35799999999999999998864
No 263
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=2.1e-16 Score=150.30 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=102.5
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++..... ...+....+.......+++ ..+.+|||||...+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------------- 63 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-----------------
Confidence 69999999999999999998765321 1112111122222233344 467899999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
......+..+|++|+|+|..++.+..+ ..++..+++...+.|+++|+||+|+......
T Consensus 64 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (161)
T cd04124 64 ---------------------TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQ 122 (161)
T ss_pred ---------------------hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHH
Confidence 223356789999999999987654433 2344555554457899999999998543222
Q ss_pred hHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 322 QVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 322 ~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
....+. ..+.+++++||++|.|++++++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 123 KKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 34567899999999999999999987654
No 264
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=1.3e-16 Score=184.94 Aligned_cols=160 Identities=23% Similarity=0.282 Sum_probs=118.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|+||||||||+|+|+|.+ ..+++.+|+|.+...+...+++.++.+|||||+.+........
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~------------ 70 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT------------ 70 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccc------------
Confidence 579999999999999999999987 5789999999999999988989999999999998754321100
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHH--HHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~--i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
...+ +.+... ...+|++++|+|++... ....+...+.+ .++|+++|+||+|+.++..
T Consensus 71 -------------s~~E---~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i 130 (772)
T PRK09554 71 -------------SLDE---QIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNI 130 (772)
T ss_pred -------------cHHH---HHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHH--cCCCEEEEEEchhhhhccCc
Confidence 0001 111222 24799999999997632 22334455555 5899999999999864321
Q ss_pred h-hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 M-QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 ~-~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .... ...+|.+++++||.+|.|+++|.+.+.+..+
T Consensus 131 ~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 131 RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 1 1111 2346889999999999999999999877653
No 265
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=9.8e-17 Score=153.16 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=100.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcc---cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|++|||||||+|+|++.... ........|.....+.+.+++..+.+|||||+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL----------------- 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-----------------
Confidence 4889999999999999999875321 11122234555555667778899999999998641
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
...+...+..+|+++||+|+...-+... ..+..+++. ...+.|+++|+||+|+...
T Consensus 64 ---------------------~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 64 ---------------------RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ---------------------HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 1233456788999999999875422111 122222221 1247899999999998654
Q ss_pred ch-hhHHHHHh--------cCCCCeeecccCCCChHHHHHHHHH
Q 005979 319 GI-MQVSEFWS--------LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 319 ~~-~~~~~~~~--------~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
.. .....+.. .+.+++++||++|.|+++++++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 21 11222221 1236899999999999999999864
No 266
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.71 E-value=5.7e-17 Score=173.70 Aligned_cols=210 Identities=21% Similarity=0.254 Sum_probs=138.4
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--hhHH----H-HHhcCC---C
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS----E-FWSLGF---S 332 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~~~----~-~~~~~~---~ 332 (666)
..........+++|++|+|+.+.......++.+.+ .++|+++|+||+|+..... .... + +...++ .
T Consensus 54 ~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 54 LNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 34444455688999999998765444334444443 3689999999999875321 1111 1 233565 4
Q ss_pred CeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccC-----cccccCCCccee
Q 005979 333 PLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTTR 407 (666)
Q Consensus 333 ~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~-----~~~~~~~~gtT~ 407 (666)
++.+||++|.|+++|++.|.+... ..+++++|.+|||||||+|+|++.. ...++..||||+
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~ 195 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTL 195 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEe
Confidence 789999999999999999865421 2589999999999999999999753 356889999999
Q ss_pred eeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH---hhCCeEEEEeeccccCCHHHHHHHHHHHH
Q 005979 408 DAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI---RRSDVVALVIEAMACITEQDCRIAERIEQ 484 (666)
Q Consensus 408 d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i---~~advvllViDa~~~~t~~d~~i~~~i~~ 484 (666)
+.....+ +..+.|+||||+.....+. .+...+.+.++ +......+.+|..+.+....+..+..+..
T Consensus 196 ~~~~~~~----~~~~~l~DtPG~~~~~~~~-------~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~ 264 (360)
T TIGR03597 196 DLIEIPL----DDGHSLYDTPGIINSHQMA-------HYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG 264 (360)
T ss_pred eEEEEEe----CCCCEEEECCCCCChhHhh-------hhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC
Confidence 9875543 2346899999997643221 11111122222 34567778788766544444444444444
Q ss_pred hCCcEEEEEecccCCCC
Q 005979 485 EGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 485 ~~~pvIlv~NK~Dl~~~ 501 (666)
.+..+.+.++|.+....
T Consensus 265 ~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 265 EKTSFTFYVSNELNIHR 281 (360)
T ss_pred CceEEEEEccCCceeEe
Confidence 45566777777765543
No 267
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.71 E-value=2.2e-16 Score=155.58 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=105.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++..... ...|.++.+.....+.+++ ..+.+|||||.........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~------------- 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG------------- 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccch-------------
Confidence 69999999999999999999876322 2334444344333445666 4678999999864321110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh----cCCCcEEEEeccCCCCc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESPR 317 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~----~~~~p~ilv~NK~D~~~ 317 (666)
+........++..+|++++|+|+..+.+.+. ..+.+.+... ..+.|+++|+||+|+..
T Consensus 68 -----------------~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 68 -----------------QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred -----------------hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 0001223455788999999999986543332 2233333321 24689999999999965
Q ss_pred cchhh---HHHHH--hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 318 KGIMQ---VSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 318 ~~~~~---~~~~~--~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..... ...+. ..+.+++++||++|.|+++|++.+.+.+-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 131 HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 32211 11221 24567899999999999999999886554
No 268
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.71 E-value=2e-16 Score=159.70 Aligned_cols=153 Identities=25% Similarity=0.255 Sum_probs=109.5
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|.||+|||||+|+|++.. ..+..++++|.+.....+.+ ++..+++|||||+.+.... ......+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~-------~~~~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAAD-------GKGRGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEE-CCeEEEEEECCCccccccc-------chhHHHHHH
Confidence 68999999999999999999875 45788899999888777765 7889999999998653211 111234456
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHH--------------------------------------------H----
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIE--------------------------------------------Q---- 484 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~--------------------------------------------~---- 484 (666)
.+++.+|++++|+|+++... +-..+.+.+. +
T Consensus 73 ~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~ 151 (233)
T cd01896 73 AVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIH 151 (233)
T ss_pred HhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCee
Confidence 68899999999999876421 1111111111 1
Q ss_pred -----------------------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHH
Q 005979 485 -----------------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKII 541 (666)
Q Consensus 485 -----------------------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~ 541 (666)
..+|+++|+||+|+...... . .+.. ..+++++||++|.|+++|+
T Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~----------~-~~~~--~~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 152 NADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEEL----------D-LLAR--QPNSVVISAEKGLNLDELK 218 (233)
T ss_pred eEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHH----------H-HHhc--CCCEEEEcCCCCCCHHHHH
Confidence 12589999999999653211 1 1222 2468999999999999999
Q ss_pred HHHHHHH
Q 005979 542 VAAEMVD 548 (666)
Q Consensus 542 ~~i~~~~ 548 (666)
+.|.+.+
T Consensus 219 ~~i~~~L 225 (233)
T cd01896 219 ERIWDKL 225 (233)
T ss_pred HHHHHHh
Confidence 9987643
No 269
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=9.9e-17 Score=177.57 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=113.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccccc--------------------------------CCCcceeeeEeEEEecC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTGP 417 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~--------------------------------~~~gtT~d~~~~~~~~~ 417 (666)
..++|+++|++++|||||+++|+.....+.. ...|+|.+.....+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~- 104 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST- 104 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-
Confidence 4589999999999999999999865433221 0126677777666664
Q ss_pred CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhC-CcEEEEEecc
Q 005979 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKW 496 (666)
Q Consensus 418 ~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~-~pvIlv~NK~ 496 (666)
++..+.||||||+.++ ...+...+..+|++|+|+|+..++..++...+..+...+ +|+|+|+||+
T Consensus 105 ~~~~i~~iDTPGh~~f--------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKi 170 (474)
T PRK05124 105 EKRKFIIADTPGHEQY--------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKM 170 (474)
T ss_pred CCcEEEEEECCCcHHH--------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEee
Confidence 7789999999997543 223445679999999999999998877776666666666 5789999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhc---CCCCCEEEEeCccCCCHHHHH
Q 005979 497 DTIPNKNQQTATYYEQDVREKLRA---LDWAPIVYSTAIAGQSVDKII 541 (666)
Q Consensus 497 Dl~~~~~~~~~~~~~~~l~~~l~~---~~~~~ii~vSAk~g~gv~~L~ 541 (666)
|+.... ....+...+.+...+.. ..+.+++++||++|.|++++-
T Consensus 171 D~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 171 DLVDYS-EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred ccccch-hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 997532 23344444555444433 235889999999999998753
No 270
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.71 E-value=2e-16 Score=178.75 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=120.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccc---------------ccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTI---------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~---------------~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~ 436 (666)
++|+++|+.++|||||+++|+...... .....|+|.......+.+ ++..++||||||+.+|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence 579999999999999999998532111 112347888877767764 78899999999986652
Q ss_pred ccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHH
Q 005979 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (666)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~ 516 (666)
....++++.+|++|+|+|+.++...+...++..+...++|+|+|+||+|+...+.. ...+++.+
T Consensus 79 ------------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~----~v~~ei~~ 142 (594)
T TIGR01394 79 ------------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPD----EVVDEVFD 142 (594)
T ss_pred ------------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHH----HHHHHHHH
Confidence 23566889999999999999999899999999999999999999999998653222 22333444
Q ss_pred HHhc------CCCCCEEEEeCccCC----------CHHHHHHHHHHHHH
Q 005979 517 KLRA------LDWAPIVYSTAIAGQ----------SVDKIIVAAEMVDK 549 (666)
Q Consensus 517 ~l~~------~~~~~ii~vSAk~g~----------gv~~L~~~i~~~~~ 549 (666)
.+.. ...+|++++||++|. |+..||+.|.+...
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 4421 224689999999996 67777777765543
No 271
>PRK10218 GTP-binding protein; Provisional
Probab=99.71 E-value=3e-16 Score=177.06 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=112.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccc---------------cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV---------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~---------------~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
.++|+++|+.++|||||+++|+....... ....|+|.......+.+ ++..+++|||||+.+|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence 56899999999999999999996322111 12357888877777764 788999999999977532
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHH
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~ 515 (666)
.+..+++.+|++|+|+|++++...+...++..+...++|+|+|+||+|+....... ..+++.
T Consensus 84 --------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~----vl~ei~ 145 (607)
T PRK10218 84 --------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDW----VVDQVF 145 (607)
T ss_pred --------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhH----HHHHHH
Confidence 34557899999999999999998999999999999999999999999986543222 233344
Q ss_pred HHHhc------CCCCCEEEEeCccCCC
Q 005979 516 EKLRA------LDWAPIVYSTAIAGQS 536 (666)
Q Consensus 516 ~~l~~------~~~~~ii~vSAk~g~g 536 (666)
+.+.. ...+|++++||++|.|
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcc
Confidence 44322 1247899999999984
No 272
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=1.8e-16 Score=152.60 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|||||||+++|++.......++.+ .....+.+++..+.+|||||....
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~l~D~~G~~~~------------------ 71 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLG----FQIKTLEYEGYKLNIWDVGGQKTL------------------ 71 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc----cceEEEEECCEEEEEEECCCCHHH------------------
Confidence 4689999999999999999999875333222222 223345566788999999998541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
.......+..+|++++|+|+..+.+.. ...+..++.. ...+.|+++|+||+|+....
T Consensus 72 --------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 72 --------------------RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 122335678899999999998653222 2223333322 22578999999999986532
Q ss_pred h-hhHHHHHh------cCCCCeeecccCCCChHHHHHHHHH
Q 005979 320 I-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~-~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
. .....+.. .+++++++||++|.|+.++++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 132 SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 1 12222221 2346899999999999999998753
No 273
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.71 E-value=4.1e-16 Score=148.19 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=103.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++.. .+..+.+++.+.......+++ ..+.+|||||.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 64 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS---------------- 64 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------------
Confidence 479999999999999999999865 234455555544444445655 458899999986421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~--~~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|....-+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 65 ----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 65 ----------------------AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred ----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 1223556789999999999864332221 22222222 1246899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.. .....+ ...+++++++||++|.|++++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 21 122222 23567899999999999999999998754
No 274
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.71 E-value=2.6e-16 Score=153.70 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=103.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.||+++|.+|+|||||+++|+... +. .....++.+.....+.. ++ ..+.+|||||+.++....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~-~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~------------ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE-FP-EEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR------------ 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CC-cccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccccc------------
Confidence 489999999999999999998443 22 22223334433334443 33 357899999986543211
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchh------hHHHHHHHHHHHHh
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQ------TATYYEQDVREKLR 519 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~------~~~~~~~~l~~~l~ 519 (666)
..+++.+|++++|+|+++..+.++. .|+..+... ..|+|+|+||+|+....... .... .+.......
T Consensus 67 --~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 67 --PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred --hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 1246889999999999876666554 366666553 68999999999985421100 0000 011111122
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+..++++|||++|.||+++|+.+.+..
T Consensus 144 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 144 EIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 23335799999999999999999998543
No 275
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.71 E-value=1.8e-16 Score=181.03 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=117.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec----CeeEEEEecCCcccccCCchhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~i~liDTpG~~~~~~~~~~~~~~~~ 236 (666)
...|+|+++|++|+|||||+++|++... .....+|+|.+.......+. +..+.+|||||+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F------------ 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF------------ 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH------------
Confidence 3568999999999999999999998763 33455778877665555442 478999999998642
Q ss_pred hhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCC
Q 005979 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
.....+++..+|++|+|+|+.++..++..+.+..+.. .+.|+|+|+||+|+.
T Consensus 309 --------------------------~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~ 360 (742)
T CHL00189 309 --------------------------SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKA 360 (742)
T ss_pred --------------------------HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCcc
Confidence 1333467789999999999999998888888887766 578999999999987
Q ss_pred ccchhhHH-HHH-------hcC--CCCeeecccCCCChHHHHHHHHHHh
Q 005979 317 RKGIMQVS-EFW-------SLG--FSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 317 ~~~~~~~~-~~~-------~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
........ .+. .+| ++++++||.+|.|+++|++.|....
T Consensus 361 ~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 361 NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 54321111 111 122 4689999999999999999987654
No 276
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=1.2e-16 Score=174.21 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=113.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccccc--------------------------------CCCcceeeeEeEEEecCCC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~--------------------------------~~~gtT~d~~~~~~~~~~~ 419 (666)
++|+++|++++|||||+++|+........ ...|+|++.....+.. ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 47999999999999999999854322111 1227788888777764 77
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC-cEEEEEecccC
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDT 498 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~-pvIlv~NK~Dl 498 (666)
.++.||||||+.+| ...+...+..+|++|+|+|+..++..++.+.+..+...++ ++|+|+||+|+
T Consensus 80 ~~~~liDtPGh~~f--------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 80 RKFIVADTPGHEQY--------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred eEEEEEeCCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 89999999998554 2234457889999999999999998888887777777666 48889999999
Q ss_pred CCCcchhhHHHHHHHHHHHHhcC--CCCCEEEEeCccCCCHHHH
Q 005979 499 IPNKNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~ii~vSAk~g~gv~~L 540 (666)
.... ....+...+.+...+... ..++++++||++|.|++++
T Consensus 146 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 146 VDYD-EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred ccch-HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 7532 233334444444444333 3468999999999999863
No 277
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.70 E-value=5.3e-16 Score=146.82 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|++++... ...+.+++.+.......+++. .+.+|||||.....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 63 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------------- 63 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH----------------
Confidence 4799999999999999999998753 233444444433444455553 47789999975421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|..+.-+..+. .+...+.+. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 64 ----------------------AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred ----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2233567789999999998764332221 122222221 247899999999998653
Q ss_pred ch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.. .....+ ...+.+++++||++|.|++++++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 21 112222 23566889999999999999999987654
No 278
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.70 E-value=3.2e-16 Score=149.63 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++... .....++.+.+.....+.+++ ..+.+|||||....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------------- 64 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------------- 64 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-----------------
Confidence 5799999999999999999998763 223344444444444555555 46899999997541
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
.......++.+|++++|+|+.+.-+... ..++..+.+.. .+.|+++|+||+|+....
T Consensus 65 ---------------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 65 ---------------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred ---------------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 1223355688999999999976432221 12223233222 368999999999986532
Q ss_pred hh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. ....+ ...+.+++++||++|.|++++++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 21 11222 234668999999999999999999987664
No 279
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=3.7e-16 Score=155.82 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=104.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCC---------------CcceeeeEeEEEecC---------CCceEEEEEc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPI---------------SGTTRDAIDTEFTGP---------EGQKFRLIDT 427 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~---------------~gtT~d~~~~~~~~~---------~~~~~~liDT 427 (666)
++|+++|+.++|||||+++|+.......... .|+|.......+.+. .+..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3699999999999999999986543222111 244444322222221 1557899999
Q ss_pred CCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC------
Q 005979 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN------ 501 (666)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~------ 501 (666)
||+.++. ..+..+++.+|++++|+|++++.+.+...+++.+...++|+|+|+||+|+...
T Consensus 81 PG~~~f~--------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 81 PGHVDFS--------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CCccccH--------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCH
Confidence 9997652 34567889999999999999999999999999888889999999999998521
Q ss_pred c-chhhHHHHHHHHHHHHhcC-------------CCCC----EEEEeCccCCCH
Q 005979 502 K-NQQTATYYEQDVREKLRAL-------------DWAP----IVYSTAIAGQSV 537 (666)
Q Consensus 502 ~-~~~~~~~~~~~l~~~l~~~-------------~~~~----ii~vSAk~g~gv 537 (666)
. .........+++...+... ...| +++.||+.|+..
T Consensus 147 ~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 147 EEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred HHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 1 1112222333333322221 1225 899999999977
No 280
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.70 E-value=4.4e-16 Score=148.67 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++|++.+.. ....+.++.+.....+..++ ..+.+|||||.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~---------------- 64 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR---------------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 47999999999999999999987632 12223332222222333333 568999999975411
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
......++.+|++++|+|..+.-+... ..+.+.+.... ...|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 65 ----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ----------------------HHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 223456789999999999875422221 12233333322 367899999999986543
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .....+ ..++++++++||++|.|+.+|++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 123 VVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 111222 345678999999999999999999987654
No 281
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.6e-16 Score=150.71 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=97.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|++|||||||+|+|.|... .. ..| ....+.+. .+|||||+..... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~----~~~-----~~v~~~~~--~~iDtpG~~~~~~---~-------------- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA----RKT-----QAVEFNDK--GDIDTPGEYFSHP---R-------------- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC----ccc-----eEEEECCC--CcccCCccccCCH---H--------------
Confidence 699999999999999999998642 11 111 12233332 2699999864211 1
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHH
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~ 324 (666)
+.+....++..+|++++|+|+..+.+.....+.. ...++|+++++||+|+.........
T Consensus 54 -----------------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~----~~~~~~ii~v~nK~Dl~~~~~~~~~ 112 (158)
T PRK15467 54 -----------------WYHALITTLQDVDMLIYVHGANDPESRLPAGLLD----IGVSKRQIAVISKTDMPDADVAATR 112 (158)
T ss_pred -----------------HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHh----ccCCCCeEEEEEccccCcccHHHHH
Confidence 1123345578999999999998765443332222 1246899999999998654333322
Q ss_pred H-HHhcCC--CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 325 E-FWSLGF--SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 325 ~-~~~~~~--~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+ ....++ +++++||++|.|+.+|++.+.+.+...
T Consensus 113 ~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 113 KLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 3 234554 789999999999999999998877643
No 282
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=3.4e-16 Score=148.58 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=101.5
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec----CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
+|+++|.+|+|||||++++++... .....+..+.+.....+.+. ...+.+|||||....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------- 64 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------------- 64 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH----------------
Confidence 699999999999999999998752 22223333344333333343 357999999997531
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.......++.+|++++|+|....-+.... .+...+.....+.|+++|+||+|+..+.
T Consensus 65 ----------------------~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 65 ----------------------DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred ----------------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 12234567899999999998764332221 2233333334578999999999986532
Q ss_pred hh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.. +...+ ...+++++++||++|.|++++++.|...
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 123 VITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 21 12222 3457788999999999999999988653
No 283
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=183.95 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=111.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccC----------CC----------------------cceeeeEeEEEecCC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP----------IS----------------------GTTRDAIDTEFTGPE 418 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~----------~~----------------------gtT~d~~~~~~~~~~ 418 (666)
.++|+++|++|+|||||+|+|+.....+... .. |+|++.....+. ++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-~~ 102 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-TP 102 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc-cC
Confidence 4689999999999999999999755443311 23 455555555565 36
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhC-CcEEEEEeccc
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWD 497 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~-~pvIlv~NK~D 497 (666)
+.++.|+||||+.++ ...+...+..+|++|+|+|+..++..++...+..+...+ +++|+|+||+|
T Consensus 103 ~~~~~liDtPG~~~f--------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 103 KRKFIVADTPGHEQY--------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CceEEEEECCChHHH--------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 778999999998543 223445688999999999999998888777777777777 57889999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhcCC--CCCEEEEeCccCCCHHH
Q 005979 498 TIPNKNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 498 l~~~~~~~~~~~~~~~l~~~l~~~~--~~~ii~vSAk~g~gv~~ 539 (666)
+.... ....+....++.+.+...+ ..+++++||++|.|+++
T Consensus 169 ~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYD-QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccch-hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 97522 2233444455554444333 46799999999999975
No 284
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.1e-16 Score=156.90 Aligned_cols=163 Identities=23% Similarity=0.333 Sum_probs=121.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..+.|+|.|.||||||||++++.+.. ..+.++|.||....-+.+.. ++.++++|||||+.+...-. . +.+| .
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E-r-N~IE----~ 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE-R-NEIE----R 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH-h-cHHH----H
Confidence 46899999999999999999999875 67999999999998888875 77899999999998753211 1 2223 4
Q ss_pred HHHHHHhh-CCeEEEEeeccc--cCC-HHHHHHHHHHHHh-CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRR-SDVVALVIEAMA--CIT-EQDCRIAERIEQE-GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~-advvllViDa~~--~~t-~~d~~i~~~i~~~-~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
++..+++. .+++||++|.+. |.+ +.+..+++.+... ..|+++|+||+|+...... +++...+...+..
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~-------~~~~~~~~~~~~~ 311 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKL-------EEIEASVLEEGGE 311 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHH-------HHHHHHHHhhccc
Confidence 55556654 588999999875 555 4556688888764 6799999999999754322 1222333444445
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..+.+|+..+.+++.+-..+...
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccceeeeehhhHHHHHHHHHHH
Confidence 56789999999999887777654
No 285
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=6e-16 Score=159.04 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=86.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccccc---------------CC------CcceeeeEeEEEecCCCceEEEEEcCCC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS---------------PI------SGTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~---------------~~------~gtT~d~~~~~~~~~~~~~~~liDTpG~ 430 (666)
++|+++|++|+|||||+++|+.....+.. ++ .|.+.......+. +++..+++|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCCc
Confidence 57999999999999999999854322111 11 1233333334555 47889999999998
Q ss_pred ccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
.++. ..+..+++.+|++++|+|++.++..+...+++.+...++|+++++||+|+..
T Consensus 82 ~df~--------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFS--------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred hHHH--------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 6542 2356678999999999999998888888888888888999999999999753
No 286
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=8.9e-16 Score=172.76 Aligned_cols=154 Identities=22% Similarity=0.288 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec------------------CeeEEEEecCCccc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------------EHEFMLVDTGGVLN 223 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~i~liDTpG~~~ 223 (666)
+.|.|+++|++|+|||||+|+|++... .....+++|++.....+.+. ...+.+|||||+..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v-~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV-AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc-ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 368999999999999999999999853 22333446665433322221 12489999999864
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+. ....+.+..+|+++||+|++++..+++.+.+++++. .+
T Consensus 82 f~--------------------------------------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~ 121 (590)
T TIGR00491 82 FT--------------------------------------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--YK 121 (590)
T ss_pred HH--------------------------------------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cC
Confidence 21 223346688999999999999999998888888876 48
Q ss_pred CcEEEEeccCCCCccc---------------hhhH------------HHHHhc---------------CCCCeeecccCC
Q 005979 304 KFIILAVNKCESPRKG---------------IMQV------------SEFWSL---------------GFSPLPISAISG 341 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~---------------~~~~------------~~~~~~---------------~~~~i~iSa~~g 341 (666)
.|+++|+||+|+.... .... ..+... ..+++++||.+|
T Consensus 122 vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred CCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 8999999999986310 0000 011111 236799999999
Q ss_pred CChHHHHHHHHHHhh
Q 005979 342 TGTGELLDLVCSELK 356 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~ 356 (666)
.|+++|+++|....+
T Consensus 202 eGideLl~~l~~l~~ 216 (590)
T TIGR00491 202 EGIPELLTMLAGLAQ 216 (590)
T ss_pred CChhHHHHHHHHHHH
Confidence 999999998876544
No 287
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=2.9e-16 Score=150.65 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+++|...... ...|+++.+. ......+..+.+|||||....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~------------------ 66 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKI------------------ 66 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHH------------------
Confidence 468999999999999999999865432 2223332222 234456788999999998541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC--HHHHHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--~~d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.......+..+|+++||+|+....+ .....+.+.+... ..+.|+++|+||+|+....
T Consensus 67 --------------------~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 67 --------------------RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred --------------------HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 1223356788999999999986432 2222333444321 2468999999999986421
Q ss_pred -hhhHHHHHhc------CCCCeeecccCCCChHHHHHHHHH
Q 005979 320 -IMQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 -~~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
..+...+... .+.++++||++|.|+.+++++|.+
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 127 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1222222221 235789999999999999998854
No 288
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=160.11 Aligned_cols=189 Identities=21% Similarity=0.233 Sum_probs=141.1
Q ss_pred hhHhhhcccchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee
Q 005979 129 SRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW 208 (666)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~ 208 (666)
.+++.+.++..++++++...+++ ..+..+.....|.|++||++|+|||||+++|++.. ....+..+.|.|.......+
T Consensus 145 ~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~L 222 (410)
T KOG0410|consen 145 IRRLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHL 222 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccC
Confidence 34677888888999998888877 33344555668999999999999999999999765 44566678888877666544
Q ss_pred -cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC
Q 005979 209 -GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (666)
Q Consensus 209 -~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~ 287 (666)
.|..+++.||-||.+ .++..+.+.| +.++..+..+|++|+|+|.+++.-
T Consensus 223 psg~~vlltDTvGFis--dLP~~LvaAF----------------------------~ATLeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 223 PSGNFVLLTDTVGFIS--DLPIQLVAAF----------------------------QATLEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred CCCcEEEEeechhhhh--hCcHHHHHHH----------------------------HHHHHHHhhcceEEEEeecCCccH
Confidence 678899999999986 5555555443 567788999999999999999876
Q ss_pred HHHH-HHHHHHHhhcCCCc-------EEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 288 AADE-EIADWLRKNYMDKF-------IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 288 ~~d~-~i~~~l~~~~~~~p-------~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.+.+ .++..|+. .+.| ++-|-||+|......... ....+++||.+|.|+++++..+...+..
T Consensus 273 e~q~e~Vl~vL~~--igv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 273 EEQRETVLHVLNQ--IGVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHhHHHhhccccccccccCccc------cCCccccccccCccHHHHHHHHHHHhhh
Confidence 6555 45566665 3443 567888888655332111 1126899999999999999998766653
No 289
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=4.5e-16 Score=148.34 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++|++... .....+.++.+.....+..++ ..+.+|||||.....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------- 66 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR---------------- 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH----------------
Confidence 5799999999999999999998763 333445555555555555666 468899999975311
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
......+..++++++|+|.++..+..+. .++..++... .+.|+++|+||+|+....
T Consensus 67 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 67 ----------------------AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred ----------------------HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 1223456789999999999754333221 2223333322 258999999999986532
Q ss_pred h---hhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 320 I---MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 ~---~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. .....+. ..+..++++||++|.|+.++++.|...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1 1112222 3456789999999999999999987653
No 290
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=6.7e-16 Score=146.65 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=104.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|+|||||+++|++... .....+..+.+.......+.+ ..+.+|||||.....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR----------------- 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-----------------
Confidence 699999999999999999998763 333334444444444455655 468899999975311
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|..++-+.+.. .++..+... ..+.|+++|+||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 64 ---------------------SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC
Confidence 2233556789999999999865443321 122222222 14689999999999865221
Q ss_pred ---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 ---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 ---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.....+ ...+++++++||.+|.|+.++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 123 VSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 112222 235678999999999999999999988764
No 291
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=4.1e-16 Score=147.73 Aligned_cols=147 Identities=25% Similarity=0.320 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|++|||||||+++|...... ...+ |.......+.+.+..+.+|||||...+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------------------- 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSI-------------------- 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHH--------------------
Confidence 4899999999999999999776532 2222 222223344566788999999998641
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEeccCCCCccc-h
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG-I 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~--~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~-~ 320 (666)
...+..++..+|++++|+|+....+. ....+...++. ...++|+++|+||+|+.... .
T Consensus 57 ------------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 57 ------------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred ------------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 13344667899999999998764221 12334444432 12478999999999986532 1
Q ss_pred hhHHHHHhc------CCCCeeecccCCCChHHHHHHHHH
Q 005979 321 MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 321 ~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
......... +++++++||++|.|+++++++|.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 112111111 235899999999999999998863
No 292
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.4e-16 Score=166.17 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=128.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc--------------ccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR--------------TIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKR 433 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~--------------~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~ 433 (666)
+.++++|+.+...|||||..+|+.... ..+....|+|.......+.+.+| ..++||||||+.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 457899999999999999999984322 12445569999988887776443 47899999999998
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
+.- ..+.+..||++|||+||.+|+..|...-+....+.+..+|.|+||+|+...+. +.+..+
T Consensus 139 s~E--------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp----e~V~~q 200 (650)
T KOG0462|consen 139 SGE--------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP----ERVENQ 200 (650)
T ss_pred cce--------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH----HHHHHH
Confidence 541 33467889999999999999999999988888899999999999999976533 334555
Q ss_pred HHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+.+.|.. ...+++.+|||+|.|+.+++++|.+...
T Consensus 201 ~~~lF~~-~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 201 LFELFDI-PPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHhcC-CccceEEEEeccCccHHHHHHHHHhhCC
Confidence 5555543 4468999999999999999999986543
No 293
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=5.6e-16 Score=148.27 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||++++++.+. .....+..+.+.....+.+++ ..+.+|||||.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------------- 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR--------------- 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH---------------
Confidence 35899999999999999999998762 222233333344444445555 468999999975311
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
......++.+|++++|+|+.++.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 67 -----------------------TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 223356788999999999876533222 1223323222 246799999999999753
Q ss_pred ch---hhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. ..... ...++.+++++||.+|.|++++++.+.+.+-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 124 RVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 11112 2234567899999999999999999987653
No 294
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.69 E-value=6.1e-16 Score=175.24 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=120.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc--ccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.|+++|++|+|||||+++|+|... ......+|+|.+.....+.+.+..+.+|||||+..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------------ 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------------ 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------------
Confidence 689999999999999999998531 122345688988888778888889999999998541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-EEEEeccCCCCccchh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIM 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~~~ 321 (666)
...+...+..+|++++|+|+..+..+++.+.+.++.. .+.| +++|+||+|+.+....
T Consensus 64 --------------------~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 64 --------------------ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred --------------------HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHH
Confidence 2344567788999999999999988888888877765 4677 9999999999764321
Q ss_pred -----hHHHHH-hc----CCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 322 -----QVSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 322 -----~~~~~~-~~----~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
....+. .. +.+++++||.+|.|++++++.|...+....
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 111221 12 357899999999999999999887776543
No 295
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=7.4e-16 Score=147.01 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|+|||||++++.+..... ...+..+.+.....+.+++ ..+.+|||||....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------- 65 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------------- 65 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECCEEEEEEEEECCChHHH----------------
Confidence 3589999999999999999998765322 1222333344444556666 46899999997531
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++++|+|+..+-+... ..++..+.. ...+.|+++|+||+|+...
T Consensus 66 ----------------------~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 66 ----------------------RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred ----------------------HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1223456788999999999986533322 233333333 2246899999999998654
Q ss_pred ch---hhHHHHH-hcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 319 GI---MQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 319 ~~---~~~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.. .....+. ..+. .++++||++|.|++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 21 1222222 3344 57999999999999999998764
No 296
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=8.1e-16 Score=146.46 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=101.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+|+|++... .....+.++.+.....+.+.+ ..+.+|||||.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL----------------- 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-----------------
Confidence 699999999999999999998863 223333344343333444444 568899999985311
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc------CCCcEEEEeccCCC
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY------MDKFIILAVNKCES 315 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~------~~~p~ilv~NK~D~ 315 (666)
......+..+|++|+|+|.+...+... ..+...+.+.. .+.|+++|+||+|+
T Consensus 64 ---------------------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 64 ---------------------EVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 122345678999999999886533222 12233332221 35899999999998
Q ss_pred Cccc---hhhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 316 PRKG---IMQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 316 ~~~~---~~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.... ...... ....+++++++||++|.|+.++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 123 TKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6321 111212 233567889999999999999999998654
No 297
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.69 E-value=4.2e-16 Score=155.50 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=103.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccc------------------cCCCcceeeeEeEEEecC----CCceEEEEEcCC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIV------------------SPISGTTRDAIDTEFTGP----EGQKFRLIDTAG 429 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~------------------~~~~gtT~d~~~~~~~~~----~~~~~~liDTpG 429 (666)
++|+++|++++|||||+++|++...... ....|+|.......+.+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3699999999999999999986432221 011234443333333221 235789999999
Q ss_pred CccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC-------c
Q 005979 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN-------K 502 (666)
Q Consensus 430 ~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~-------~ 502 (666)
+.++. ..+..+++.+|++|+|+|++++.+.+...+++.+...++|+++|+||+|+... .
T Consensus 81 ~~~f~--------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~ 146 (213)
T cd04167 81 HVNFM--------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPND 146 (213)
T ss_pred CcchH--------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHH
Confidence 86642 23456789999999999999988888878888777778999999999998621 1
Q ss_pred chhhHHHHHHHHHHHHhcCC------CCC----EEEEeCccCCCHH
Q 005979 503 NQQTATYYEQDVREKLRALD------WAP----IVYSTAIAGQSVD 538 (666)
Q Consensus 503 ~~~~~~~~~~~l~~~l~~~~------~~~----ii~vSAk~g~gv~ 538 (666)
......+..+.+...+.... +.| +++.||+.|+++.
T Consensus 147 ~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 147 AYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 11223333444444443332 134 8899999999874
No 298
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=5.2e-16 Score=147.35 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=102.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++.+... ...+.+++.+.....+.+++. .+.+|||||...+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA--------------- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch---------------
Confidence 4799999999999999999997652 233444444444444555654 567899999864221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
.....++.+|++++|+|..+.-+..+ ..+.+.+... ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 65 -----------------------MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12245678999999999876433322 2233334321 246899999999998643
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ....+ ...+.+++++||++|.|+.++++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 211 11112 23456789999999999999999987643
No 299
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=9e-16 Score=173.45 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=108.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCc-ceeeeEeEEEecC-----CC------------ceEEEEEcCCCc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEFTGP-----EG------------QKFRLIDTAGIR 431 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-tT~d~~~~~~~~~-----~~------------~~~~liDTpG~~ 431 (666)
+.+.|+++|++|+|||||+|+|.+.. .....+| +|.+.-...+... .+ ..+.||||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46789999999999999999998764 3333333 3332211110000 00 127899999996
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcch-------
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ------- 504 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~------- 504 (666)
+|..+ ..+.++.+|++++|+|+++++..++...+..+...++|+++|+||+|+......
T Consensus 83 ~f~~~--------------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 83 AFTNL--------------RKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred HHHHH--------------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHH
Confidence 65321 224678899999999999998888888888888889999999999998532110
Q ss_pred --------hhHHHH---HHHHHHHHhc--------------CCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 505 --------QTATYY---EQDVREKLRA--------------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 505 --------~~~~~~---~~~l~~~l~~--------------~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
...+.+ ..++...+.. ....+++++||++|.|+++|+..+..
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 001111 1112222221 13478999999999999999988754
No 300
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.4e-16 Score=158.69 Aligned_cols=164 Identities=23% Similarity=0.295 Sum_probs=122.9
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
-|++||.||+|||||++++.... .++.+||.||..+....+....+..+++-|.||+..-. +...-...+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA-------s~G~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA-------SEGVGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccccccc-------ccCCCccHHHH
Confidence 58999999999999999999664 78999999999999888876567789999999997643 22334456789
Q ss_pred HHHhhCCeEEEEeeccccC---CHHHHH-HHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-CC
Q 005979 453 RAIRRSDVVALVIEAMACI---TEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-LD 522 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~---t~~d~~-i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~-~~ 522 (666)
+++.+|-++++|+|++..- ..++.. +..++..+ .+|.+||+||+|+.... +..+.+ .+.+.. ..
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~--e~~~~~----~~~l~~~~~ 306 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE--EELEEL----KKALAEALG 306 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH--HHHHHH----HHHHHHhcC
Confidence 9999999999999997532 134443 44556554 79999999999965432 222222 333332 33
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+.+.+++||.+++|+++|+..+.+.+..
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 4444449999999999999999877654
No 301
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=5.5e-16 Score=148.75 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=102.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||+++|.+... .. ...|.........+.+..+.+|||||.....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~------------------- 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR------------------- 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEEECCEEEEEEECCCChhcc-------------------
Confidence 589999999999999999998742 22 2233444444556678899999999985421
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHhh-cCCCcEEEEeccCCCCccc-h
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRKN-YMDKFIILAVNKCESPRKG-I 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~-~ 320 (666)
..+...+..+|+++||+|.+..- ......+...++.. ..+.|+++|+||+|+.... .
T Consensus 58 -------------------~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 58 -------------------PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred -------------------hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 22335568899999999987642 22222333333321 2357999999999986431 1
Q ss_pred hhHHHHHh---cC----CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 MQVSEFWS---LG----FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 ~~~~~~~~---~~----~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.....+.. .+ +.++++||++|.|+.+++++|.+.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 22222222 11 1466889999999999999998776543
No 302
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=7.4e-16 Score=151.01 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=103.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCC-CCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||++++++... ....+ +.++.+.....+.+++ ..+.||||||....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF----------------- 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 699999999999999999998763 22222 3333333332344555 46889999996431
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
.......+..+|++++|+|+....+... ..+...+.... .+.|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 64 ---------------------RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred ---------------------HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 1223345678999999999976533322 22334444322 367999999999986422
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
. .....+ ...+.+++++||++|.|+.+|+..|.+.+...
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 111122 23566889999999999999999999887654
No 303
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=5.6e-16 Score=147.20 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccc-ccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|++|+|||||+|+|++.+... ..+..+. +.....+.+++ ..+.+|||||.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~v~~~~~~~~~~i~D~~G~~~~~--------------- 64 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGA--AFLTQTVNLDDTTVKFEIWDTAGQERYR--------------- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEeCCchHHHH---------------
Confidence 479999999999999999999886432 2222222 22222334444 568899999975311
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~ 318 (666)
......++.+|++++|+|+..+-+... ..++..+.... ...|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 65 -----------------------SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 122345678999999999975432221 23334443322 45789999999998742
Q ss_pred c---hhhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 G---IMQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~---~~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. ...... ....++.++++||++|.|+.++++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 122 RQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 2 111112 234567899999999999999999998765
No 304
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.68 E-value=7.9e-16 Score=174.59 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=115.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc--------------ccCCCcceeeeEeEEEecC--C--CceEEEEEcCCCc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI--------------VSPISGTTRDAIDTEFTGP--E--GQKFRLIDTAGIR 431 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~--------------~~~~~gtT~d~~~~~~~~~--~--~~~~~liDTpG~~ 431 (666)
..++|+++|+.++|||||+.+|+...... .....|+|.......+.+. + +..++||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 35789999999999999999998532111 1112367766544444321 2 4579999999997
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHH
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~ 511 (666)
+|. ....++++.||++|+|+|++++...++...+..+...++|+|+|+||+|+..... +...
T Consensus 86 dF~--------------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~----~~v~ 147 (600)
T PRK05433 86 DFS--------------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP----ERVK 147 (600)
T ss_pred HHH--------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH----HHHH
Confidence 652 2345678999999999999999988888777777778999999999999864321 1122
Q ss_pred HHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 512 ~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++.+.+. .....++++||++|.|+++|+++|.....
T Consensus 148 ~ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 148 QEIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 33333322 12234899999999999999999987654
No 305
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=8.6e-16 Score=147.16 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||++++++..... ...+..+.+.....+.+.+ ..+.+|||||....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF---------------- 66 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 3589999999999999999999876322 2223333333333344444 56899999996431
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHH---Hhh-cCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL---RKN-YMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l---~~~-~~~~p~ilv~NK~D~~ 316 (666)
.......++.+|+++||+|...+-+.. .+..|+ +.. ..+.|+++|+||+|+.
T Consensus 67 ----------------------~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 67 ----------------------RSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred ----------------------HHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 123346678899999999988543322 333343 221 2468999999999987
Q ss_pred ccch---hhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 317 RKGI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 317 ~~~~---~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.... ..... ....+..++++||.+|.|+++++..+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4321 11222 2345678999999999999999999887653
No 306
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.68 E-value=6.2e-16 Score=153.02 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=103.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc--ccccCCCCcccceeEEEEeec---------------------------C-----
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWG---------------------------E----- 210 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~---------------------------~----- 210 (666)
.|+++||.|+|||||+.+|.+... .......+.|..+....+.|. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 589999999999999999987621 111112233333332222221 3
Q ss_pred -eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-CCH
Q 005979 211 -HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTA 288 (666)
Q Consensus 211 -~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~-~~~ 288 (666)
..+.+|||||+.. +...+..++..+|++++|+|+..+ ...
T Consensus 82 ~~~i~~iDtPG~~~--------------------------------------~~~~~~~~~~~~D~~llVvd~~~~~~~~ 123 (203)
T cd01888 82 VRHVSFVDCPGHEI--------------------------------------LMATMLSGAAVMDGALLLIAANEPCPQP 123 (203)
T ss_pred ccEEEEEECCChHH--------------------------------------HHHHHHHhhhcCCEEEEEEECCCCCCCc
Confidence 6799999999743 224556778889999999999874 445
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-h----HHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 289 ~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~----~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+....+..+... ..+|+++|+||+|+...... . ...+.. .+.+++++||++|.|+++|++.|.+.+++
T Consensus 124 ~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 124 QTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 555555555442 23579999999998753211 1 111221 24578999999999999999999987764
No 307
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=9.5e-16 Score=145.88 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=102.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+|++++... ...+.+++.+.......+++ ..+.+|||||.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------------- 62 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----------------- 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-----------------
Confidence 699999999999999999998753 23334444444444445555 467899999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh--hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~--~~~~~p~ilv~NK~D~~~~~ 319 (666)
......+..+|++++|+|+.+.-+... ..+...+.. ...+.|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 63 ---------------------AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred ---------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 112245678999999999976433222 122222322 11368999999999986532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .....+ ...+.+++++||++|.|++++++.|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 111122 234567899999999999999999987664
No 308
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=5.2e-16 Score=170.54 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=117.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcc------------------------------cccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
..+|+++|+.++|||||+.+|+..... ......|+|.+.....+.. ++.
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~~ 85 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CCe
Confidence 468999999999999999999842110 1112348888887777764 788
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-------CHHHHHHHHHHHHhCCc-EEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-------TEQDCRIAERIEQEGKG-CLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-------t~~d~~i~~~i~~~~~p-vIlv 492 (666)
.+.|+||||+.+| ...+...+..+|++++|+|+..+. ..|..+.+..+...++| +|++
T Consensus 86 ~i~lIDtPGh~~f--------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 86 YFTIIDAPGHRDF--------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred EEEEEECCChHHH--------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 9999999998654 345666789999999999999886 36788888888888987 6789
Q ss_pred EecccCCC-CcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHH
Q 005979 493 VNKWDTIP-NKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 493 ~NK~Dl~~-~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~ 539 (666)
+||+|... ......+++..+++...+...+ .+|+|++||.+|.|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99999532 1223456667777777776554 37899999999999864
No 309
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=7.4e-16 Score=146.76 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++++... .+..+++++.+.....+.+++. .+.+|||||.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------------- 63 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch----------------
Confidence 479999999999999999998654 2344455555444444556554 46799999986422
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh--hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~--~~~~~p~ilv~NK~D~~~~ 318 (666)
......++.+|++++|+|....-+... ..+...+.. ...+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 64 ----------------------AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred ----------------------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 122345788999999999875433322 123333322 2246899999999998653
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ....+ ...+.+++++||++|.|+.+++.+|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 211 11222 245668899999999999999999987653
No 310
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.68 E-value=7e-16 Score=146.29 Aligned_cols=147 Identities=21% Similarity=0.264 Sum_probs=97.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc--ccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++|++... ....++.+.+ .......+..+.+|||||.....
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~----------------- 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYR----------------- 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhhH-----------------
Confidence 488999999999999999998642 1222333332 22334567889999999986411
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhh---cCCCcEEEEeccCCCCc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN---YMDKFIILAVNKCESPR 317 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~---~~~~p~ilv~NK~D~~~ 317 (666)
.....++..+|+++||+|++++.+... ..+..+++.. ..+.|+++|+||+|+..
T Consensus 60 ---------------------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 60 ---------------------GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred ---------------------HHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 223355788999999999987543221 2222232211 14689999999999865
Q ss_pred cch-hhHHHHHhc------CCCCeeecccCCCChHHHHHHHHH
Q 005979 318 KGI-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 318 ~~~-~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
... ......... .+.++++||++|.|+++++++|.+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 119 ALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 421 112222211 124689999999999999998853
No 311
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=5.7e-16 Score=146.77 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=96.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
+|+++|.+|||||||+++|++.......+..+. ....+.+ ....+.+|||||....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~l~i~D~~G~~~~------------------- 57 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGF----NVEMLQLEKHLSLTVWDVGGQEKM------------------- 57 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCc----ceEEEEeCCceEEEEEECCCCHhH-------------------
Confidence 489999999999999999998864332222222 2223333 3468999999998531
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC--HHHHHHHHHHHh-hcCCCcEEEEeccCCCCccc-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~- 319 (666)
...+...+..+|+++||+|+.++.+ .....+...++. ...+.|+++|+||+|+....
T Consensus 58 -------------------~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 58 -------------------RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred -------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 1233456788999999999986532 222233344432 12478999999999986421
Q ss_pred hhhHHHHHh-------cCCCCeeecccCCCChHHHHHHHHH
Q 005979 320 IMQVSEFWS-------LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~~~~~~~~~-------~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
......... .+++++++||++|.|++++++.|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 111111111 1235789999999999999998854
No 312
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.67 E-value=1.3e-15 Score=150.27 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=106.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.|+++|..|||||||++++..... .....+.++.+.....+.+++ ..+.+|||+|...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~----------------- 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN----------------- 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH-----------------
Confidence 589999999999999999997653 222223344455445566666 568999999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~~ 320 (666)
..+..+++.+|++++|+|..+.-+.... .+.+.++.. ..+.|+++|+||+|+.....
T Consensus 64 ---------------------~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 64 ---------------------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 2334667899999999999876444332 233444432 24689999999999864322
Q ss_pred h---hHHHHH-h-cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 321 M---QVSEFW-S-LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 321 ~---~~~~~~-~-~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ....+. . .++.++++||++|.|+++++++|.+.+..
T Consensus 123 v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 123 ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 122222 2 25678999999999999999999876653
No 313
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.67 E-value=1.3e-15 Score=152.30 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=104.3
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC---eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||+++|++... .....+..+.+.....+.+.+ ..+.+|||||.....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~---------------- 64 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG---------------- 64 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----------------
Confidence 699999999999999999998752 223334444555444555543 578999999974311
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc----CCCcEEEEeccCCCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY----MDKFIILAVNKCESP 316 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~----~~~p~ilv~NK~D~~ 316 (666)
......+..+|++|||+|....-+.... .+...+.+.. .+.|+++|+||+|+.
T Consensus 65 ----------------------~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 65 ----------------------KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 2223457889999999998865333322 2334444321 235789999999986
Q ss_pred ccchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..... ....+ ...++..+++||++|.|++++++.|.+.+..
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 123 HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 43211 11122 2346678999999999999999999887654
No 314
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=8.1e-16 Score=148.36 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|.+|+|||||+++|++...... .+ |.........+.+..+.++||||...+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~------------------- 72 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQESL------------------- 72 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCHHH-------------------
Confidence 5799999999999999999987654322 22 223334455677889999999998541
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH--HHHHHHHHHHhh-cCCCcEEEEeccCCCCccc-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKN-YMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~--~d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~- 319 (666)
.......+..+|+++||+|++.+-.. ....+.+.+... ..+.|+++++||+|+....
T Consensus 73 -------------------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~ 133 (174)
T cd04153 73 -------------------RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT 133 (174)
T ss_pred -------------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC
Confidence 12334567899999999999765222 222333443321 2368999999999986431
Q ss_pred hhhHHHHH------hcCCCCeeecccCCCChHHHHHHHHH
Q 005979 320 IMQVSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
..+..... ..++.++++||++|.|+++++++|.+
T Consensus 134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 11111211 12235789999999999999999853
No 315
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.67 E-value=8e-16 Score=156.19 Aligned_cols=143 Identities=22% Similarity=0.230 Sum_probs=103.8
Q ss_pred HHHHhccEEEEEecCCCCC-CHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchh---hHHHHHhcCCCCeeecccCCC
Q 005979 268 AAIEESCVIIFLVDGQAGL-TAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM---QVSEFWSLGFSPLPISAISGT 342 (666)
Q Consensus 268 ~~i~~ad~il~VvD~~~~~-~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~i~iSa~~g~ 342 (666)
..++++|.+++|+|+..+. +.... .++..+.. .+.|+++|+||+|+...... ....+...|+.++.+||++|.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 3578999999999998654 33221 12223333 57899999999999653322 122344567889999999999
Q ss_pred ChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC-------cceeeeEeEEEe
Q 005979 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFT 415 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~-------gtT~d~~~~~~~ 415 (666)
|+++|++.+.. ..++++|.||||||||+|+|++.....+++.+ +||+......+
T Consensus 110 gi~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l- 170 (245)
T TIGR00157 110 GLKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF- 170 (245)
T ss_pred hHHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-
Confidence 99999987631 26899999999999999999987766666554 38887765554
Q ss_pred cCCCceEEEEEcCCCccccc
Q 005979 416 GPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 416 ~~~~~~~~liDTpG~~~~~~ 435 (666)
.++ .|+||||+..+..
T Consensus 171 -~~~---~liDtPG~~~~~l 186 (245)
T TIGR00157 171 -HGG---LIADTPGFNEFGL 186 (245)
T ss_pred -CCc---EEEeCCCccccCC
Confidence 222 8999999987643
No 316
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.67 E-value=9.1e-16 Score=146.84 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++++..... ....+....+.....+.. ....+.+|||||........
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------------- 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR-------------- 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--------------
Confidence 6999999999999999999865421 111121111221111222 23578999999986532211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
...+..+|++++|+|...+.+.... .+.+.+.+...+.|+++|+||+|+......
T Consensus 67 ------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 67 ------------------------DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK 122 (166)
T ss_pred ------------------------HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC
Confidence 1345679999999999865443322 233444443347999999999998743321
Q ss_pred -hHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 322 -QVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 322 -~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
....+. ..+..++++||++|.|+.++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 123 AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 122232 23457899999999999999999987764
No 317
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=1.2e-15 Score=149.33 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=104.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++|++... ...+++++.+.......+++. .+.+|||||.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 61 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT----------------- 61 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-----------------
Confidence 489999999999999999997653 233444444443334455554 47889999975421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh----cCCCcEEEEeccCCCCc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESPR 317 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~----~~~~p~ilv~NK~D~~~ 317 (666)
.....++..+|++|+|+|.....+... ..+.+.+... ..+.|+++|+||+|+..
T Consensus 62 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 62 ---------------------ALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred ---------------------HHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 122356788999999999876543332 2333334321 14689999999999864
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... ....+ ...+..++++||++|.|++++++.+.+.+...
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 2211 11222 23466789999999999999999998876543
No 318
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=1.2e-15 Score=145.55 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++.... ....+. ........... ....+.+|||||...+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPT-IEDTYRQVISCSKNICTLQITDTTGSHQFP---------------- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCc-chheEEEEEEECCEEEEEEEEECCCCCcch----------------
Confidence 47999999999999999999987532 111221 11111111222 33568899999986421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh----cCCCcEEEEeccCCCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESP 316 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~----~~~~p~ilv~NK~D~~ 316 (666)
.....++..+|++++|+|.....+... ..+...++.. ..+.|+++|+||+|+.
T Consensus 64 ----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 64 ----------------------AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 112245678999999999986544332 2344444432 1468999999999986
Q ss_pred ccchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHH
Q 005979 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
..... .... ....+..++++||++|.|+++++++|..
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 52211 1111 2234557899999999999999999874
No 319
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=1.6e-15 Score=156.66 Aligned_cols=113 Identities=26% Similarity=0.326 Sum_probs=85.7
Q ss_pred eEEEecCCCCChhHHHHHHhccCccc-----ccC------------CCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~-----~~~------------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
+|+++|++|+|||||+|+|++..... +.. ..+.+.......+. +++..+++|||||+.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHH--
Confidence 48999999999999999998543211 100 01333333334454 36789999999997543
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
...+..+++.+|++++|+|++.+...+...+++++...++|+++++||+|+..
T Consensus 78 ------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 78 ------------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred ------------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 23456688999999999999999888888888888889999999999999764
No 320
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.67 E-value=1.1e-15 Score=145.26 Aligned_cols=152 Identities=21% Similarity=0.170 Sum_probs=101.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++++..... ..+.++..+.....+.+++. .+.+|||||...+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccch--------------
Confidence 47999999999999999999876532 22333333444444555553 4778999998653221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
....+..+|++++|+|..+.-+..+ ..+...+... ..+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 66 ------------------------RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred ------------------------HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2245678999999999976533222 2333334332 147899999999998543
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ....+ ...+.+++++||++|.|+.+++..+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 211 11222 23456789999999999999999987654
No 321
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=1.1e-15 Score=148.78 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|.+.....+.+ |.......+.+++.++.++||||....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~------------------ 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQA------------------ 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHH------------------
Confidence 3689999999999999999999875433222 333344556677889999999998541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
......++..+|+++||+|+++.- ......+.+.+.. ...+.|+++|+||+|+....
T Consensus 75 --------------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 134 (184)
T smart00178 75 --------------------RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134 (184)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence 123345678999999999997642 2222233333322 12478999999999986421
Q ss_pred -hhhHHHHHhc-------------CCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 -IMQVSEFWSL-------------GFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 -~~~~~~~~~~-------------~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
..+......+ ...++++||++|.|+++++++|...
T Consensus 135 ~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 135 SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1122222111 1147999999999999999999754
No 322
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.67 E-value=1.9e-15 Score=141.46 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=114.3
Q ss_pred EEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005979 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (666)
Q Consensus 168 ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (666)
++|++|+|||||+|+|++.........+++|.........+. +..+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---------------- 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---------------- 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh----------------
Confidence 589999999999999999876657777888888777666655 678999999999764332211
Q ss_pred chhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHH-
Q 005979 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE- 325 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~- 325 (666)
....+...+..+|++++|+|+..+.......+...... .+.|+++|+||+|+..........
T Consensus 65 ---------------~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 65 ---------------REELARRVLERADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred ---------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHH
Confidence 01344567788999999999998877766653444444 589999999999987643222210
Q ss_pred ------HHhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 326 ------FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 326 ------~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
....+.+++++||.++.|+.++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 128 LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 11224478999999999999999998754
No 323
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.67 E-value=1.3e-15 Score=144.73 Aligned_cols=147 Identities=22% Similarity=0.290 Sum_probs=96.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||++++...... ...|.+. ............+.+|||||....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g--~~~~~~~~~~~~~~l~D~~G~~~~-------------------- 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKI-------------------- 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCC--cceEEEEECCEEEEEEECCCCHhH--------------------
Confidence 6999999999999999999655432 2233222 222344566788999999998531
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC--HHHHHHHHHHHh-hcCCCcEEEEeccCCCCccc-h
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPRKG-I 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~-~ 320 (666)
...+..+++.+|+++||+|+....+ .....+.+.+.. .....|+++|+||+|+.... .
T Consensus 58 ------------------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 119 (159)
T cd04150 58 ------------------RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119 (159)
T ss_pred ------------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH
Confidence 1233456799999999999976422 222223333332 12358999999999986432 1
Q ss_pred hhHHHHHhc------CCCCeeecccCCCChHHHHHHHHH
Q 005979 321 MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 321 ~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
.+....... .+.++++||++|.|+++++++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 121122211 223578999999999999998853
No 324
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=2.3e-15 Score=144.20 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=102.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|++|||||||+|+|++... .....+..+.+.......+.+. .+.+|||||....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------------ 62 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF------------------ 62 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH------------------
Confidence 699999999999999999998763 2222333333444444455553 4679999997531
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-----cCCCcEEEEeccCCCC
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCESP 316 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-----~~~~p~ilv~NK~D~~ 316 (666)
.......++.+|++|+|+|+.++.+.... .+.+.+... ..+.|+++|+||+|+.
T Consensus 63 --------------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 63 --------------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred --------------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 12233567889999999999865432222 222222221 1278999999999997
Q ss_pred ccc---hhhHHHH-HhcC-CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 317 RKG---IMQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 317 ~~~---~~~~~~~-~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... ......+ ...+ .+++++||.+|.|+.++++.|.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred cccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 321 1111222 2344 479999999999999999999876553
No 325
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.66 E-value=1.6e-15 Score=146.87 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec------------CeeEEEEecCCcccccCCchh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPN 230 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~i~liDTpG~~~~~~~~~~ 230 (666)
..+|+++|.+|||||||++++.+... .....+.++.+.....+.+. ...+.+|||||....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------ 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH------
Confidence 35799999999999999999998752 22223333333333333332 256899999997541
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEE
Q 005979 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFII 307 (666)
Q Consensus 231 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~i 307 (666)
.......++.+|++++|+|....-+..+. .++..+... ..+.|++
T Consensus 77 --------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 77 --------------------------------RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV 124 (180)
T ss_pred --------------------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 12334567889999999999764333321 222333321 1367899
Q ss_pred EEeccCCCCccch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 308 LAVNKCESPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 308 lv~NK~D~~~~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
+|+||+|+..... ....++ ...+++++++||++|.|+.++++.|.+.+-
T Consensus 125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 125 LCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred EEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999865321 112222 235678899999999999999999987553
No 326
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=1.2e-15 Score=148.54 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=99.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee---cCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|.+|||||||++++.+.... ...|..+.+........ .+..+.+|||||...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 65 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------------- 65 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH----------------
Confidence 47999999999999999999886532 22333222222222222 4578999999997531
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~ 317 (666)
...+...+..+|++++|+|+.++-+... ..+...+.. ...++|+++|+||+|+..
T Consensus 66 ----------------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 66 ----------------------RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred ----------------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 1223345788999999999876422221 111222211 114789999999999864
Q ss_pred cc-hhhHHHHHh---c----CCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 318 KG-IMQVSEFWS---L----GFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 ~~-~~~~~~~~~---~----~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. ......+.. . +..++++||++|.|+.+|++.|.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 124 ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 21 111222221 1 12468999999999999999999877543
No 327
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=2e-15 Score=148.94 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||++++++... .....+..+.+.....+.+++ ..+.||||||.....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------------- 69 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR--------------- 69 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---------------
Confidence 46899999999999999999998753 212223333333333344445 468899999975421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
......+..+|++++|+|+...-+... ..+++.++......|+++|+||+|+....
T Consensus 70 -----------------------~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 70 -----------------------TITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred -----------------------HHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 223356788999999999976533322 22344444444568999999999986532
Q ss_pred h---hhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+. ..+..++++||.+|.|+.++++.|.+.+-.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 2 1222222 346688999999999999999999877653
No 328
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=2.4e-15 Score=143.03 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=99.3
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcc-cceeEEEEee---cCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
+|+++|.+|||||||+++|.+........+..++ .+.....+.+ ....+.+|||||.....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 66 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS--------------- 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH---------------
Confidence 6999999999999999999864222223332222 2332222333 22679999999974311
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
......+.++|++++|+|.+...+... ..++..+.....+.|+++|+||+|+....
T Consensus 67 -----------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 67 -----------------------DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 223355788999999999876433221 22333333332468999999999986542
Q ss_pred hhh---HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 320 IMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 ~~~---~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ...+ ...+.+++++||.+|.|+.++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 124 EVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 211 1112 23456789999999999999999987653
No 329
>PTZ00369 Ras-like protein; Provisional
Probab=99.66 E-value=1.8e-15 Score=147.99 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=103.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||++++.+.... ..+..+..+.....+.+++ ..+.+|||||......
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 68 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-------------- 68 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh--------------
Confidence 468999999999999999999987532 2222222222233344444 4577899999865221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
....++..+|++++|+|..+.-+.... .+...+... ..+.|+++|+||+|+..
T Consensus 69 ------------------------l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 69 ------------------------MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred ------------------------hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 122456789999999999865432221 223333221 13679999999999854
Q ss_pred cch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
... .....+ ...+.+++++||++|.|+.+++++|.+.+.+.
T Consensus 125 ~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 321 112222 23456789999999999999999998877644
No 330
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=1.3e-15 Score=176.77 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=97.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-----ccc------------CCCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-----~~~------------~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
+.++|+++|++|+|||||+++|+..... .+. ...|+|++.....+.+ ++..+++|||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 4578999999999999999999843211 112 2558999988888874 888999999999854
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
+ ...+.++++.+|++|+|+|+.+++..++..++..+.+.++|+|+++||||+..
T Consensus 86 f--------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 F--------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred H--------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3 23577889999999999999999999999999999999999999999999875
No 331
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.66 E-value=3.1e-15 Score=141.95 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=103.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++... +....+++.+.......+++ ..+.+|||||.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------------- 62 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------------- 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-----------------
Confidence 699999999999999999997652 33445555554444444554 468999999975421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~--~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
......++.++.+++|+|...+-+. ....+..+++. ...+.|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 121 (164)
T cd04139 63 ---------------------AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR 121 (164)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence 2233567889999999998754221 12222233322 12479999999999986521
Q ss_pred ---hhhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 ---IMQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ---~~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
...... ...++++++++||++|.|+.+|++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 122 QVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111112 2235678999999999999999999987653
No 332
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.66 E-value=1.7e-15 Score=165.42 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=109.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccC--cccccCCCcceeeeEeEEEe--------------c-----------CCCceEE
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFT--------------G-----------PEGQKFR 423 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~--~~~~~~~~gtT~d~~~~~~~--------------~-----------~~~~~~~ 423 (666)
..+|+++|++++|||||+++|.+.. ........|+|.+.-...+. . ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 4689999999999999999997642 11111223445443211110 0 0145899
Q ss_pred EEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-CHHHHHHHHHHHHhC-CcEEEEEecccCCCC
Q 005979 424 LIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPN 501 (666)
Q Consensus 424 liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-t~~d~~i~~~i~~~~-~pvIlv~NK~Dl~~~ 501 (666)
+|||||+.++ ...+...+..+|++++|+|++++. ..+..+.+..+...+ +|+|+|+||+|+.+.
T Consensus 84 liDtPGh~~f--------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 84 FVDAPGHETL--------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEECCCHHHH--------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 9999998543 234566778899999999999876 666666666666665 469999999999753
Q ss_pred cchhhHHHHHHHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 502 KNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 502 ~~~~~~~~~~~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
... ....+++.+.+.. ..+++++++||++|.|+++|++.|....
T Consensus 150 ~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 150 EKA---LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHH---HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 211 1112233333322 2357899999999999999999998654
No 333
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=2.8e-15 Score=148.11 Aligned_cols=155 Identities=18% Similarity=0.164 Sum_probs=102.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-C--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||++++++... .....+.+..+.....+.++ + ..+.+|||||...+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---------------- 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---------------- 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----------------
Confidence 699999999999999999998752 22223333334433344454 3 568999999985421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-----cCCCcEEEEeccCCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCES 315 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-----~~~~p~ilv~NK~D~ 315 (666)
......+..+|++++|+|.....+.... .+...+... ..+.|+++|+||+|+
T Consensus 65 ----------------------~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 65 ----------------------GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred ----------------------hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 2233567899999999998765333322 122222211 246799999999998
Q ss_pred Cccc---hhhHHHH-HhcC-CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 316 PRKG---IMQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 316 ~~~~---~~~~~~~-~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... ......+ ...+ ..++++||++|.|+.++++.|.+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 123 KKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred ccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6321 1122222 2345 3789999999999999999998877543
No 334
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=2.1e-15 Score=143.06 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=101.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++|++.... ....+..+.+.......+++ ..+.+|||||.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------------- 63 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH-----------------
Confidence 6999999999999999999987632 22233333333333344444 468899999985421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHh-hcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|...+.+.... .++..++. ...+.|+++|+||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 64 ---------------------SVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE 122 (161)
T ss_pred ---------------------HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence 2233556789999999999875443321 22222222 124789999999999865321
Q ss_pred h---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 321 M---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. .... ....++.++++||++|.|+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 123 VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 1 1122 23456789999999999999999998764
No 335
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.66 E-value=3.2e-15 Score=146.03 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|..|||||||+.++...... ....+..+.+.....+.+++ ..+.+|||+|.....
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--------------- 69 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC--------------- 69 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH---------------
Confidence 358999999999999999999976421 11123334444444455566 568899999986421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
......++.+|++|+|+|.+...+.... .+++.+.....+.|+++|+||+|+....
T Consensus 70 -----------------------~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~ 126 (189)
T cd04121 70 -----------------------TIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126 (189)
T ss_pred -----------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc
Confidence 2233556899999999999876544432 3444454444678999999999986532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .+...+ ...+..++++||++|.|++++++.|.+.+..
T Consensus 127 ~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred CCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 122222 2356789999999999999999999876653
No 336
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=9.3e-16 Score=154.23 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=118.0
Q ss_pred hhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 367 ~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
.+...-+|+++|.|+||||||+|.|++.. ..+..++.||..++...+.+ +|..++++|+||+..-.+. ...
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~-------g~g 129 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASS-------GRG 129 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEee-cCceEEEEcCcccccCccc-------CCC
Confidence 34455799999999999999999999875 78999999999999999986 8999999999999764332 222
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccC------------------------------------------CHHHHHHHHHHH-
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACI------------------------------------------TEQDCRIAERIE- 483 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~------------------------------------------t~~d~~i~~~i~- 483 (666)
...+.+..+|.||.+++|+|+.... +.-|...++.+.
T Consensus 130 rG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~ 209 (365)
T COG1163 130 RGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILR 209 (365)
T ss_pred CcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHH
Confidence 2345677889999999999986321 111222222111
Q ss_pred Hh---------------------------CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCC
Q 005979 484 QE---------------------------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQS 536 (666)
Q Consensus 484 ~~---------------------------~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~g 536 (666)
++ .+|+++|+||+|+..... ...+.+. .+++++||++|.|
T Consensus 210 Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-------~~~l~~~------~~~v~isa~~~~n 276 (365)
T COG1163 210 EYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-------LERLARK------PNSVPISAKKGIN 276 (365)
T ss_pred HhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-------HHHHHhc------cceEEEecccCCC
Confidence 11 479999999999976311 1122222 2799999999999
Q ss_pred HHHHHHHHHHHH
Q 005979 537 VDKIIVAAEMVD 548 (666)
Q Consensus 537 v~~L~~~i~~~~ 548 (666)
+++|.+.|.+.+
T Consensus 277 ld~L~e~i~~~L 288 (365)
T COG1163 277 LDELKERIWDVL 288 (365)
T ss_pred HHHHHHHHHHhh
Confidence 999999887553
No 337
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=2.7e-15 Score=152.56 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=112.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++.... ..+.+++.+.......+++ ..+.+|||+|...+..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~---------------- 63 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA---------------- 63 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----------------
Confidence 6999999999999999999876532 2344444455444555666 5678999999864211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh----------hcCCCcEEEEec
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK----------NYMDKFIILAVN 311 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~----------~~~~~p~ilv~N 311 (666)
.....+..+|++|+|+|....-+.+. ..+.+.+.. ...+.|+++|+|
T Consensus 64 ----------------------~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 64 ----------------------MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred ----------------------HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 11234578999999999986533222 223333322 124689999999
Q ss_pred cCCCCccchh---hHHHHHh--cCCCCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEe-cCCCCChh
Q 005979 312 KCESPRKGIM---QVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIV-GRPNVGKS 385 (666)
Q Consensus 312 K~D~~~~~~~---~~~~~~~--~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vv-G~~nvGKS 385 (666)
|+|+...... +...+.. .+..++++||++|.|+++|++.|........+ ...+...+|.++ |.+..+|+
T Consensus 122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~e-----~~~~~~~~~~~~~~~~~~~~~ 196 (247)
T cd04143 122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNE-----MSPSLHRKISVQYGDALHKKS 196 (247)
T ss_pred CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccccc-----cCccccceeeeeecccccccc
Confidence 9998642211 2222222 23568999999999999999999886543221 122333455554 66655554
No 338
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.66 E-value=2.4e-15 Score=145.28 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||++++...... ...|.+. .......+.+..+.+|||||....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~--~~~~~~~~~~~~l~l~D~~G~~~~------------------ 70 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIG--FNVETVTYKNISFTVWDVGGQDKI------------------ 70 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccc--cceEEEEECCEEEEEEECCCChhh------------------
Confidence 368999999999999999999654422 2223222 222344567788999999998541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC--HHHHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
.......++.+|++|||+|++...+ .....+...+.. ...+.|+++|+||+|+....
T Consensus 71 --------------------~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 71 --------------------RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 1233456789999999999876432 222233333332 12468999999999986432
Q ss_pred -hhhHHHHHhc------CCCCeeecccCCCChHHHHHHHHHHh
Q 005979 320 -IMQVSEFWSL------GFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 -~~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
..+....... .+.++++||++|.|+.+++++|.+.+
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1112121111 12356899999999999999997654
No 339
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=1.9e-15 Score=150.60 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++....... +..+.+.....+.+++ ..+.||||||...+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------------- 76 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--------------- 76 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 468999999999999999999987643322 2233333333344544 468999999986421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHH--HHHHHHhh--cCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKN--YMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~--i~~~l~~~--~~~~p~ilv~NK~D~~ 316 (666)
......++.+|++++|+|.....+..... +...+... ..+.|+++|+||+|+.
T Consensus 77 -----------------------~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 77 -----------------------TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22335678899999999998654333321 22223221 2357899999999986
Q ss_pred ccchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..... .... ....+..++++||++|.|++++++.|.+.+..
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred ccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 43221 1111 22356678999999999999999999987754
No 340
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.65 E-value=3.3e-15 Score=143.87 Aligned_cols=154 Identities=12% Similarity=0.107 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++.... ..+..+..+.....+.+++ ..+.+|||||.....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 64 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT---------------- 64 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH----------------
Confidence 47999999999999999999976532 2222333333333455566 458899999986421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
.....++..+|++++|+|..+..+.... .+...+... ..+.|+++|+||+|+...
T Consensus 65 ----------------------~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 65 ----------------------AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred ----------------------HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 2223556789999999999877655543 233344331 246899999999998643
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... ....+ ...+.+++++||++|.|+++++++|...+-.
T Consensus 123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 211 12222 2356788999999999999999999876653
No 341
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.65 E-value=2.7e-15 Score=143.32 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=100.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcc-cceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|.+|||||||++++.+... ....+.++ .+.......+++ ..+.+|||||...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 64 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF---------------- 64 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 5799999999999999999998753 22333322 222222334554 46799999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHH---hh-cCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KN-YMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~---~~-~~~~p~ilv~NK~D~~ 316 (666)
.......++.+|++++|+|...+-+.. .+..|+. .. ..+.|+++|+||+|+.
T Consensus 65 ----------------------~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 65 ----------------------RAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred ----------------------HHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 122345678899999999998653322 2333332 21 2467899999999986
Q ss_pred ccch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 317 RKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 317 ~~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.... .....+ ...++.++++||++|.|+.+++..+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5432 122222 23466889999999999999998887654
No 342
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=2.5e-15 Score=147.38 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=102.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccc-eeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD-RMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||++++++... ....+.++... .....+.+++. .+.+|||||......
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------------- 65 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA--------------- 65 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 699999999999999999998763 22233333322 22234455654 466999999754211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc-
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~- 319 (666)
.....+..+|++++|+|..+.-+... ..+++.++....+.|+++|+||+|+....
T Consensus 66 -----------------------~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 122 (193)
T cd04118 66 -----------------------MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR 122 (193)
T ss_pred -----------------------hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc
Confidence 11234578999999999876533222 23444454433478999999999985421
Q ss_pred ---h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 ---I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ---~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+.+++++||++|.|+.+|++.|.+.+-+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 123 SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 111222 2345678999999999999999999877643
No 343
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.65 E-value=3e-15 Score=170.10 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=115.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc--ccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.|+++|++|+|||||+++|+|.+. .......|+|.+..+..... ++..+.+|||||+..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f----------------- 64 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF----------------- 64 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH-----------------
Confidence 689999999999999999998542 22234468888876655544 5677999999998641
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-EEEEeccCCCCccch
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~~ 320 (666)
.+.....+..+|++++|+|+..+..+++.+.+.++.. .+.| +++|+||+|+.+...
T Consensus 65 ---------------------i~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 65 ---------------------LSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEAR 121 (614)
T ss_pred ---------------------HHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHH
Confidence 2344567888999999999999999999999888876 3556 579999999975322
Q ss_pred h-----hHHHHH-hcC---CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 321 M-----QVSEFW-SLG---FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 321 ~-----~~~~~~-~~~---~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. +...+. ..+ .+++++||.+|.|+++|++.|......
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1 111222 233 368999999999999999999876654
No 344
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.65 E-value=1.7e-15 Score=148.21 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=119.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..||+++|.+|||||+|+.++++.. .+..+.+|.-|.....+.. ++. .+.++||+|+..+..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~------------ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEFSAM------------ 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEE-CCEEEEEEEEcCCCcccChHH------------
Confidence 4699999999999999999999764 3455666777877777776 343 7889999996554322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
+ ..+++.+|++++|+++++..++++.. +...|.+ ...|+|+|+||+|+...+.....+ .+.++....
T Consensus 68 -~-~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee------g~~la~~~~ 139 (196)
T KOG0395|consen 68 -R-DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE------GKALARSWG 139 (196)
T ss_pred -H-HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH------HHHHHHhcC
Confidence 1 23789999999999999988887776 4445533 257999999999997655443322 344456667
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||+.+.||+++|..+.+....
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 889999999999999999999865543
No 345
>PRK13796 GTPase YqeH; Provisional
Probab=99.65 E-value=1.3e-15 Score=163.35 Aligned_cols=145 Identities=28% Similarity=0.316 Sum_probs=104.0
Q ss_pred HHHHHHhcc-EEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--hhHH----H-HHhcCC---CCe
Q 005979 266 ATAAIEESC-VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS----E-FWSLGF---SPL 334 (666)
Q Consensus 266 ~~~~i~~ad-~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~~~----~-~~~~~~---~~i 334 (666)
..+.+..++ +|++|+|+.+........+.++. .++|+++|+||+|+..... .... . ....|+ .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 455566666 99999999764433323333332 3789999999999975321 1111 1 223455 578
Q ss_pred eecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccC-----cccccCCCcceeee
Q 005979 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTTRDA 409 (666)
Q Consensus 335 ~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~-----~~~~~~~~gtT~d~ 409 (666)
.+||++|.|+.+|++.|.+..+ ..+++++|.||||||||+|+|++.. ...++..||||++.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 9999999999999999876532 2479999999999999999998542 34578999999998
Q ss_pred EeEEEecCCCceEEEEEcCCCcc
Q 005979 410 IDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 410 ~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
+...+. ++ ..|+||||+..
T Consensus 204 ~~~~l~--~~--~~l~DTPGi~~ 222 (365)
T PRK13796 204 IEIPLD--DG--SFLYDTPGIIH 222 (365)
T ss_pred EEEEcC--CC--cEEEECCCccc
Confidence 765542 33 48999999864
No 346
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.65 E-value=7.9e-16 Score=169.42 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccc------------------------------cCCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++||+|+|||||+++|+.....+. ...+|+|++.....+.+++..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 45799999999999999999985432221 115799999999988899999
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC--CCCHHH
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAAD 290 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~--~~~~~d 290 (666)
+.+|||||+..+. ......+..+|++|+|+|+.. ++..++
T Consensus 86 i~liDtpG~~~~~--------------------------------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~ 127 (425)
T PRK12317 86 FTIVDCPGHRDFV--------------------------------------KNMITGASQADAAVLVVAADDAGGVMPQT 127 (425)
T ss_pred EEEEECCCcccch--------------------------------------hhHhhchhcCCEEEEEEEcccCCCCCcch
Confidence 9999999985421 122344678999999999998 777777
Q ss_pred HHHHHHHHhhcCCCcEEEEeccCCCCccchh-------hHHHHH-hcCC-----CCeeecccCCCChHH
Q 005979 291 EEIADWLRKNYMDKFIILAVNKCESPRKGIM-------QVSEFW-SLGF-----SPLPISAISGTGTGE 346 (666)
Q Consensus 291 ~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-------~~~~~~-~~~~-----~~i~iSa~~g~Gi~e 346 (666)
.+.+.++... ...|+++|+||+|+...... +...+. ..++ +++++||.+|.|+.+
T Consensus 128 ~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 128 REHVFLARTL-GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHc-CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 7777776653 22469999999998752111 111222 2343 579999999999986
No 347
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=7.6e-16 Score=144.03 Aligned_cols=154 Identities=28% Similarity=0.355 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
++|+++|.+|+|||||+|+|++.. ......+++|.+.......+++ ..+.+|||||........
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------------- 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR------------- 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH-------------
Confidence 479999999999999999999987 6677778888888877777777 778999999965421110
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
....+.+...+..+|++++|++...........+.+.+. .+.|+++|+||+|+......
T Consensus 68 ------------------~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~ 126 (161)
T TIGR00231 68 ------------------RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLK 126 (161)
T ss_pred ------------------HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhh
Confidence 001112222233345555544444332222222333222 27899999999998764321
Q ss_pred h--HHHHHhc-CCCCeeecccCCCChHHHHHHHH
Q 005979 322 Q--VSEFWSL-GFSPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 322 ~--~~~~~~~-~~~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
. ...+... ..+++++||.+|.|+.++++.|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 127 THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 1 1122223 33789999999999999998863
No 348
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=2.4e-15 Score=147.04 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=101.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+++|.+....... .|.....+.+.+++..+.++||||....
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~----~T~~~~~~~i~~~~~~~~l~D~~G~~~~------------------ 76 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV----PTLHPTSEELTIGNIKFKTFDLGGHEQA------------------ 76 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccCcceEEEEECCEEEEEEECCCCHHH------------------
Confidence 467999999999999999999987632221 2333445566778889999999997531
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH--HHHHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~--~d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..++..+|++++|+|+...-+. ....+...+... ..+.|+++|+||+|+....
T Consensus 77 --------------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~ 136 (190)
T cd00879 77 --------------------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV 136 (190)
T ss_pred --------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc
Confidence 12334567889999999998754221 222233333211 2468999999999986421
Q ss_pred -hhhHHHHHh-----------------cCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 -IMQVSEFWS-----------------LGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 -~~~~~~~~~-----------------~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
......+.. ....++++||++|.|+.+++++|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 111222221 11247999999999999999999764
No 349
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.65 E-value=2.7e-15 Score=142.23 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 63 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-----------------
Confidence 69999999999999999999876322 2223333333223334444 568999999975421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~~ 319 (666)
......++.+|++++|+|...+-+.... .+++.+... ..+.|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 64 ---------------------TLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred ---------------------hhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc
Confidence 1223456789999999998765433321 233333332 2468899999999987332
Q ss_pred h--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 I--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. .....+ ...+++++++||++|.|+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 123 VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 1 112222 2346789999999999999999998764
No 350
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=1.4e-15 Score=176.39 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=117.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhc---cCcc--ccc------------CCCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVG---EDRT--IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~---~~~~--~~~------------~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
+.++|+++|++|+|||||+|+|+. .... .+. ...|+|++.....+.+ ++..++|+||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 457999999999999999999973 2111 122 3568999998888874 788999999999854
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
+ ...+.++++.+|++|+|+|+..+++.++..++..+.+.++|+|+++||||+.... .....+
T Consensus 88 f--------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~----~~~~~~ 149 (693)
T PRK00007 88 F--------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD----FYRVVE 149 (693)
T ss_pred H--------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHH
Confidence 3 2246778899999999999999999999999999999999999999999997532 334556
Q ss_pred HHHHHHhcCCCCCEEEEeCccC
Q 005979 513 DVREKLRALDWAPIVYSTAIAG 534 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g 534 (666)
.+++.+......+++++||..+
T Consensus 150 ~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 150 QIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHhCCCeeeEEecCccCCc
Confidence 7777777766677889998877
No 351
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=5e-15 Score=139.77 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=103.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++|++.. ......+++.+.......+.+ ..+.+|||||....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------ 60 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF------------------ 60 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 48999999999999999999875 344555555565555555654 56889999997541
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~~~ 319 (666)
.......+..+|++++|+|....-+..+ ..+...+.... ...|+++|+||+|+....
T Consensus 61 --------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 61 --------------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred --------------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 1223356788999999999875432222 22333333221 379999999999987522
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. .....+ ...+.+++++||.+|.|+.++++.|.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 1 122222 2345688999999999999999998764
No 352
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=5.2e-15 Score=147.79 Aligned_cols=159 Identities=15% Similarity=0.076 Sum_probs=105.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+||+++|.+|||||||+++++... +.....++...+.....+.. .+...+.+|||+|..++..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~------------ 74 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE-FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL------------ 74 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh------------
Confidence 35799999999999999998876433 22222233333333333322 13348899999998654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.++++++|+|+++..+.++.. |+..+.. .+.|+++|+||+|+..... . .+. . . +....+..
T Consensus 75 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-~-~~~-~----~-~~~~~~~~ 144 (215)
T PTZ00132 75 --RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV-K-ARQ-I----T-FHRKKNLQ 144 (215)
T ss_pred --hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC-C-HHH-H----H-HHHHcCCE
Confidence 123678899999999999877766554 4444443 3689999999999854221 1 111 1 1 22223567
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
++++||++|.|++++|.+|.+.+...
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999998776543
No 353
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=3.2e-15 Score=140.29 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|+|||||+|+|++...... ..+..+.+........ ....+.+|||||....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------------- 62 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF----------------- 62 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH-----------------
Confidence 3699999999999999999998864332 2233333333333333 3467899999998531
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
.......++.+|++++|+|+.+.-+... ..+...+.... ...|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 63 ---------------------RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred ---------------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 1234456788999999999976322222 22333343322 468999999999996221
Q ss_pred ---hhhHHHHH-hcCCCCeeecccCCCChHHHHHHHH
Q 005979 320 ---IMQVSEFW-SLGFSPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 320 ---~~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
......+. ..+.+++.+||.+|.|+.++++.|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 11222222 3466899999999999999999875
No 354
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=2.1e-15 Score=171.07 Aligned_cols=151 Identities=27% Similarity=0.364 Sum_probs=109.6
Q ss_pred cCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchh
Q 005979 170 GRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLA 249 (666)
Q Consensus 170 G~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 249 (666)
|.||||||||+|+|+|.+ ..+++++|+|.+...+...+++.++.+|||||+.+......+
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~------------------- 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE------------------- 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-------------------
Confidence 899999999999999987 578999999999999888898999999999999764332110
Q ss_pred hHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh--hHHH-H
Q 005979 250 TREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSE-F 326 (666)
Q Consensus 250 ~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~--~~~~-~ 326 (666)
+.+.+.+. ....+|++++|+|+++. . ....+...+.+ .++|+++|+||+|+.++... .... .
T Consensus 61 ----------e~v~~~~l-~~~~aDvvI~VvDat~l-e-r~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~ 125 (591)
T TIGR00437 61 ----------EEVARDYL-LNEKPDLVVNVVDASNL-E-RNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLE 125 (591)
T ss_pred ----------HHHHHHHH-hhcCCCEEEEEecCCcc-h-hhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHH
Confidence 00111111 12468999999999752 2 22233333434 47999999999998643211 1111 2
Q ss_pred HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 327 WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 327 ~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
..+|.+++++||++|.|++++++.+.+..
T Consensus 126 ~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 126 ERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34577899999999999999999998754
No 355
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=2.9e-15 Score=144.09 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=99.4
Q ss_pred EEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 166 V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
|+++|.+|||||||++++++... . ..+..+..+.......+++. .+.+|||||.......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------------- 62 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-P-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRL---------------- 62 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-C-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchh----------------
Confidence 57999999999999999998763 2 22222222222333445553 5899999998643221
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccch-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
....+..+|++|+|+|....-+.... .+...+.....+.|+++|+||+|+.....
T Consensus 63 ----------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 120 (174)
T smart00174 63 ----------------------RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST 120 (174)
T ss_pred ----------------------chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh
Confidence 11345789999999998765333322 24444544446899999999999865211
Q ss_pred --------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHh
Q 005979 321 --------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 321 --------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
.+...+ ...+. .++++||++|.|++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 011112 23454 789999999999999999987654
No 356
>PRK12288 GTPase RsgA; Reviewed
Probab=99.64 E-value=2.5e-15 Score=159.33 Aligned_cols=141 Identities=25% Similarity=0.307 Sum_probs=102.6
Q ss_pred HHhccEEEEEecCCCCCCHH--HHHHHHHHHhhcCCCcEEEEeccCCCCccch----hhH-HHHHhcCCCCeeecccCCC
Q 005979 270 IEESCVIIFLVDGQAGLTAA--DEEIADWLRKNYMDKFIILAVNKCESPRKGI----MQV-SEFWSLGFSPLPISAISGT 342 (666)
Q Consensus 270 i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~----~~~-~~~~~~~~~~i~iSa~~g~ 342 (666)
+.++|.+++|.+........ +..+. .... .+.|+++|+||+|+..... ... ..+...|++++++||.+|.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 47799999999876555443 22222 2222 5789999999999976431 111 2233568899999999999
Q ss_pred ChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCc-------ceeeeEeEEEe
Q 005979 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFT 415 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-------tT~d~~~~~~~ 415 (666)
|+++|++.|.. ..++++|.||||||||+|+|++.....++..++ ||+......+.
T Consensus 195 GideL~~~L~~------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~ 256 (347)
T PRK12288 195 GLEELEAALTG------------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP 256 (347)
T ss_pred CHHHHHHHHhh------------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence 99999988742 137899999999999999999988888777764 67766554442
Q ss_pred cCCCceEEEEEcCCCccccc
Q 005979 416 GPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 416 ~~~~~~~~liDTpG~~~~~~ 435 (666)
.| ..|+||||+..+..
T Consensus 257 --~~--~~liDTPGir~~~l 272 (347)
T PRK12288 257 --HG--GDLIDSPGVREFGL 272 (347)
T ss_pred --CC--CEEEECCCCCcccC
Confidence 23 26999999988754
No 357
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=4.8e-15 Score=143.96 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||++++....... ..|.+. .....+.+.+..+.+|||||....
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~~~------------------ 74 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG--FNVETVEYKNISFTVWDVGGQDKI------------------ 74 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcc--eeEEEEEECCEEEEEEECCCCHHH------------------
Confidence 3589999999999999999998654322 223222 223345667788999999997531
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+...++.+|+++||+|+++..+.. ..++.+++.. ...+.|+++|+||+|+....
T Consensus 75 --------------------~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 75 --------------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred --------------------HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 233445678899999999998643222 1223333322 12468999999999986542
Q ss_pred hh-hHHHHHhcC------CCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 IM-QVSEFWSLG------FSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~~-~~~~~~~~~------~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .......+. +.++++||++|.|+.+++++|.+.+.
T Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 21 112222211 12457999999999999999987664
No 358
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=3.3e-15 Score=147.25 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=102.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++... ...+..++.+.....+.+.+ ..+.+|||||...+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------------- 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP----------------- 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-----------------
Confidence 489999999999999999998753 23344444444444556666 578899999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCcc-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK- 318 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~- 318 (666)
.....++..+|+++||+|+.++.+.+.. .+...+... ..+.|+++|+||+|+...
T Consensus 62 ---------------------~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 62 ---------------------AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 1122456889999999999765433322 222222221 146899999999998652
Q ss_pred chh---hHHHHH--hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIM---QVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~---~~~~~~--~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ...... ..+..++++||++|.|+.++++.|.+.+.
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 211 111121 23456799999999999999999988765
No 359
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=5.2e-15 Score=142.02 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcc-cceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..+|+++|.+|||||||++++++.... +..+.+++ .+.....+.+++ ..+.+|||+|.......
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------------ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL------------ 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc------------
Confidence 467999999999999999999987632 13344433 333333455566 46789999998653221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
...++..+|++|+|+|+..+.+. ..+..++... ..+.|+++|+||+|+..
T Consensus 71 --------------------------~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 71 --------------------------NDAELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred --------------------------chhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 12446899999999999764222 2233333321 13689999999999864
Q ss_pred cch---hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 318 KGI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ....++ ..+++ .++++||.+|.|+.++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 123 QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 321 112223 23455 4699999999999999999987653
No 360
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.64 E-value=3.6e-15 Score=144.02 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++..... ...+.++..+.....+.+++ ..+.+|||+|.......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-------------- 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh--------------
Confidence 3699999999999999999998653 23333333332222445556 56889999999753221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|..+.-+.... .+...++....+.|+++|+||+|+....
T Consensus 66 ------------------------~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 66 ------------------------RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred ------------------------hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 12356789999999999876444332 2444454443578999999999985431
Q ss_pred hh---------------hHHHHH-hcC-CCCeeecccCCCChHHHHHHHHH
Q 005979 320 IM---------------QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~~---------------~~~~~~-~~~-~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
.. +...+. ..+ ..++++||++|.|+.++++.+..
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 10 111121 234 46899999999999999998875
No 361
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=4.8e-15 Score=142.42 Aligned_cols=154 Identities=19% Similarity=0.112 Sum_probs=101.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++... .....|.+..+.....+.+++ ..+.+|||||...+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK----------------- 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-----------------
Confidence 689999999999999999998752 222223333344334444555 468999999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hc-CCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~-~~~p~ilv~NK~D~~~~~ 319 (666)
......++.+|++++|+|+...-+... ..+...+.+ .. ...|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 64 ---------------------CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred ---------------------hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 222355789999999999976322221 223333322 21 235689999999985432
Q ss_pred hh-----hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 IM-----QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~~-----~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. ....+ ..++..++++||++|.|+.++++.|.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 11112 2345678999999999999999999887654
No 362
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=4.2e-15 Score=140.60 Aligned_cols=147 Identities=23% Similarity=0.287 Sum_probs=98.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||++++++..........+ .......+.+..+.+|||||....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~~~~-------------------- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIG----FNVETVEYKNVSFTVWDVGGQDKI-------------------- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcC----cceEEEEECCEEEEEEECCCChhh--------------------
Confidence 48999999999999999999986322222222 233345566788999999998642
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC--HHHHHHHHHHHh-hcCCCcEEEEeccCCCCccchh
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
.......+..+|++++|+|+..+-+ .....+...+.. ...+.|+++|+||+|+......
T Consensus 57 ------------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 57 ------------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred ------------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 1223356688999999999986522 111222222221 1247899999999998754311
Q ss_pred -hHHHHHh------cCCCCeeecccCCCChHHHHHHHHH
Q 005979 322 -QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 322 -~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
....... ...+++++||++|.|+.++++.|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 1222221 1236899999999999999998864
No 363
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=4.3e-15 Score=142.01 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=99.5
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+|+|++.... ...+.+..+. .....+ ....+.+|||||.....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----------------- 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDR----------------- 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhh-----------------
Confidence 6899999999999999999987632 2233322221 111122 34678999999986411
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
..+...+..+|++++|+|...+.+... ..+...++....+.|+++|+||+|+.....
T Consensus 62 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 62 ---------------------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ---------------------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 122344688999999999886554443 234455554445789999999999875432
Q ss_pred h----hHH-HH-Hhc-CC-CCeeecccCCCChHHHHHHHHHHh
Q 005979 321 M----QVS-EF-WSL-GF-SPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 321 ~----~~~-~~-~~~-~~-~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. ... .+ ... ++ .++++||++|.|++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 111 11 111 22 688999999999999999887654
No 364
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.64 E-value=3.9e-15 Score=168.39 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=119.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccc---------------ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCch
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAI---------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 229 (666)
.|+|+||.++|||||+++|+.....+ .....|+|.......+.|.+..+.+|||||+.++.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 69999999999999999998532111 11234778777777889999999999999996521
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEE
Q 005979 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (666)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv 309 (666)
..+.+++..+|++++|+|+..+...+...++..+.. .+.|+++|
T Consensus 79 ----------------------------------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVv 122 (594)
T TIGR01394 79 ----------------------------------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVV 122 (594)
T ss_pred ----------------------------------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEE
Confidence 344577889999999999999988888888888876 57899999
Q ss_pred eccCCCCccchhh----HHHHH--------hcCCCCeeecccCCC----------ChHHHHHHHHHHhhhhc
Q 005979 310 VNKCESPRKGIMQ----VSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKVE 359 (666)
Q Consensus 310 ~NK~D~~~~~~~~----~~~~~--------~~~~~~i~iSa~~g~----------Gi~eLl~~I~~~l~~~~ 359 (666)
+||+|+....... ...++ .+.++++++||.+|. |+..|++.|.+.++...
T Consensus 123 iNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 123 INKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 9999986543211 11222 124578999999996 79999999999988553
No 365
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.6e-15 Score=160.18 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=120.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC--CCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
+.|-|+++|+...|||||+..+-+.+ .....--|+|...--..+... +...++++||||+.-|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt------------- 69 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT------------- 69 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH-------------
Confidence 46789999999999999999998665 334455578887766666654 34789999999985443
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHH-H--h-cCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK-L--R-ALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~-l--~-~~~~ 523 (666)
.+|+. ...-+|+++||+|+.+++.+|..+-++.++..+.|+|+++||+|.++..... ...++.+. + . .-+.
T Consensus 70 ~mRaR-Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~----v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 70 AMRAR-GASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDK----VKQELQEYGLVPEEWGGD 144 (509)
T ss_pred HHHhc-CCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHH----HHHHHHHcCCCHhhcCCc
Confidence 33333 3356899999999999999999999999999999999999999997542211 11111110 0 0 1123
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
..++++||++|.|+++|+..|.-..+
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998875543
No 366
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=5e-15 Score=144.36 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=102.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-C--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||++++++... . ..+..++.......+... + ..+.+|||||.....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD---------------- 63 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH----------------
Confidence 699999999999999999998753 2 222222222222223333 2 468999999975421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
......+..+|++++|+|..+..+..+. .+...+.....+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 64 ----------------------RLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred ----------------------HHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 1122346789999999999875444332 1233333333578999999999986532
Q ss_pred -------hhhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 320 -------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 320 -------~~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
......+ ...+. .++++||++|.|+.+++..+.+.+....
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 1122222 23565 7899999999999999999988776443
No 367
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.7e-15 Score=156.79 Aligned_cols=161 Identities=22% Similarity=0.298 Sum_probs=123.9
Q ss_pred hcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 368 ~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|-|.++|+...|||||+.+|-+... .....-|+|...--..+..+.|.+++|.||||+.- ++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~V-AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-------------F~ 215 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSV-AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-------------FS 215 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCce-ehhhcCCccceeceEEEecCCCCEEEEecCCcHHH-------------HH
Confidence 45678999999999999999999987653 34455688887766677777899999999999843 33
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHH---HHHhcC-CC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR---EKLRAL-DW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~---~~l~~~-~~ 523 (666)
.+|+. ..+.+|++++|+-+.+|+.+|..+.++.+...+.|+|+++||+|...... +...+++. -.+..+ +.
T Consensus 216 aMRaR-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p----ekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 216 AMRAR-GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP----EKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred HHHhc-cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH----HHHHHHHHHcCccHHHcCCc
Confidence 33332 44678999999999999999999999999999999999999999764322 11222211 112223 35
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++++||++|.|++.|-+++.-.
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHH
Confidence 789999999999999999988733
No 368
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.63 E-value=5.8e-15 Score=164.89 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=89.6
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCccc--c-------------cC------CCcceeeeEeEEEecCCCceEEEEEc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI--V-------------SP------ISGTTRDAIDTEFTGPEGQKFRLIDT 427 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~--~-------------~~------~~gtT~d~~~~~~~~~~~~~~~liDT 427 (666)
.+.++|+++|++|+|||||+++|+.....+ . ++ ..|++.......+.+ ++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 346799999999999999999997321110 0 11 114444444445553 7889999999
Q ss_pred CCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
||+.++. ..+.++++.+|++|+|+|+++++..+...+++.....++|+++++||+|+..
T Consensus 87 PG~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFS--------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhH--------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 9986642 2356688999999999999999988888899888889999999999999864
No 369
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=5.1e-15 Score=143.88 Aligned_cols=153 Identities=23% Similarity=0.266 Sum_probs=101.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|.+|||||||++++....... ..| |.......+.+.+..+.+|||||....
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~------------------- 74 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYKNLKFTMWDVGGQDKL------------------- 74 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--ccccceEEEEECCEEEEEEECCCCHhH-------------------
Confidence 579999999999999999997554322 222 222333445567788999999998531
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccch
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~ 320 (666)
...+...+..+|++|||+|+.+.- ......+.+.+.. .....|+++|+||+|+.....
T Consensus 75 -------------------~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~ 135 (182)
T PTZ00133 75 -------------------RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS 135 (182)
T ss_pred -------------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC
Confidence 233446678999999999987532 2222234444432 124689999999999864321
Q ss_pred -hhHHHHHhcC------CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 -MQVSEFWSLG------FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 -~~~~~~~~~~------~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.......... +.++++||++|.|+.+++++|.+.+.+.
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 1111211111 1245789999999999999998877653
No 370
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.63 E-value=2.3e-15 Score=139.79 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=90.3
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|++|||||||+|+|++.... +.. |. ...+.+ .+|||||.... ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~-----~~~~~~---~~iDt~G~~~~---~~--------------- 50 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ-----AVEYND---GAIDTPGEYVE---NR--------------- 50 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce-----eEEEcC---eeecCchhhhh---hH---------------
Confidence 6999999999999999999987531 111 11 122322 68999997420 00
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--hh
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ 322 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~ 322 (666)
..+ +.....++++|++++|+|+..+.+..+..+.+. ..+|+++|+||+|+..... ..
T Consensus 51 ---------------~~~-~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~ 109 (142)
T TIGR02528 51 ---------------RLY-SALIVTAADADVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIER 109 (142)
T ss_pred ---------------HHH-HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHH
Confidence 001 122235789999999999987766544333322 2459999999999864321 11
Q ss_pred HHHHH-hcCC-CCeeecccCCCChHHHHHHHH
Q 005979 323 VSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 323 ~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
...+. ..+. +++++||++|.|+++|++.|.
T Consensus 110 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 110 AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 22222 3455 689999999999999998874
No 371
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=159.54 Aligned_cols=163 Identities=25% Similarity=0.313 Sum_probs=120.4
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHH--HHhc-CCCCeeeccc
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE--FWSL-GFSPLPISAI 339 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~--~~~~-~~~~i~iSa~ 339 (666)
.++..+.+...|+|+.|+|++.+.......+.+++. +++.++|+||+|+.+......+. +... +..++.+++.
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~ 100 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAK 100 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEee
Confidence 456777888999999999999998877777777775 45669999999999865433322 2223 5678999999
Q ss_pred CCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC
Q 005979 340 SGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 340 ~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~ 419 (666)
++.+...+...+.......-......-......+++++|.||||||||||+|++.....+++.||+|.......+.
T Consensus 101 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---- 176 (322)
T COG1161 101 SRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---- 176 (322)
T ss_pred cccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC----
Confidence 9999988885544332211000000001123468999999999999999999999999999999999998876654
Q ss_pred ceEEEEEcCCCccc
Q 005979 420 QKFRLIDTAGIRKR 433 (666)
Q Consensus 420 ~~~~liDTpG~~~~ 433 (666)
..+.|+||||+.-.
T Consensus 177 ~~i~LlDtPGii~~ 190 (322)
T COG1161 177 DGIYLLDTPGIIPP 190 (322)
T ss_pred CCeEEecCCCcCCC
Confidence 24899999998653
No 372
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=3.5e-15 Score=162.99 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=113.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc---------------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+|+|++.... ......|+|.+.....+.+++.++.++||||+..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~---- 87 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD---- 87 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH----
Confidence 357999999999999999999975211 1122368888877666667788999999999753
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ 306 (666)
+...+.+++..+|++++|+|+..++..++.+++.++.. .+.| +
T Consensus 88 ----------------------------------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~i 131 (409)
T CHL00071 88 ----------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNI 131 (409)
T ss_pred ----------------------------------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEE
Confidence 12444677889999999999999999999999988876 4778 7
Q ss_pred EEEeccCCCCccchh------hHHHH-HhcC-----CCCeeecccCCCC------------------hHHHHHHHHHHhh
Q 005979 307 ILAVNKCESPRKGIM------QVSEF-WSLG-----FSPLPISAISGTG------------------TGELLDLVCSELK 356 (666)
Q Consensus 307 ilv~NK~D~~~~~~~------~~~~~-~~~~-----~~~i~iSa~~g~G------------------i~eLl~~I~~~l~ 356 (666)
|+|+||+|+...... +...+ ...+ .+++++||.+|.+ +..|++.|...++
T Consensus 132 IvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 132 VVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 789999999753221 11112 1223 3679999999863 4566777666553
No 373
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=6e-15 Score=149.10 Aligned_cols=114 Identities=21% Similarity=0.288 Sum_probs=89.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccc-----------------cCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-----------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
.|+++|++|+|||||+++|+.....+. ....++|.......+.+.+.++.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999986432211 112244555566677888999999999999652
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
...+..+++.+|.+++|+|+..+...+...+++.+.+ .++|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~i 120 (237)
T cd04168 78 -----------------------------------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTI 120 (237)
T ss_pred -----------------------------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 1334567889999999999999998888888888876 489999
Q ss_pred EEeccCCCCcc
Q 005979 308 LAVNKCESPRK 318 (666)
Q Consensus 308 lv~NK~D~~~~ 318 (666)
+++||+|+...
T Consensus 121 ivvNK~D~~~a 131 (237)
T cd04168 121 IFVNKIDRAGA 131 (237)
T ss_pred EEEECccccCC
Confidence 99999998753
No 374
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=6.1e-15 Score=141.01 Aligned_cols=153 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+++|++... .....+.++.+.....+.+.+ ..+.+|||||....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------------- 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF---------------- 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 46899999999999999999997642 223334444555555566666 45788999997531
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++++|+|...+.+... ..+...++... .+.|+++|+||+|+...
T Consensus 70 ----------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 70 ----------------------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred ----------------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 1233456788999999999876533221 12232233221 36889999999998643
Q ss_pred chh---hHHHHHh-cCCCCeeecccCCCChHHHHHHHHHH
Q 005979 319 GIM---QVSEFWS-LGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 319 ~~~---~~~~~~~-~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
... ....+.. ....++++||++|.|+.++++.|.+.
T Consensus 128 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 211 1122322 23468999999999999999998764
No 375
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=8.8e-15 Score=159.65 Aligned_cols=164 Identities=22% Similarity=0.212 Sum_probs=111.8
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccC--cccccCCCcceeeeEeEEEec------------------C--C-----Cce
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTG------------------P--E-----GQK 421 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~--~~~~~~~~gtT~d~~~~~~~~------------------~--~-----~~~ 421 (666)
...++|+++|+.++|||||+.+|.+.. ........|+|.+.-...+.+ . + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 345789999999999999999997631 111222346666543211110 0 0 257
Q ss_pred EEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-CHHHHHHHHHHHHhCC-cEEEEEecccCC
Q 005979 422 FRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEGK-GCLIVVNKWDTI 499 (666)
Q Consensus 422 ~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-t~~d~~i~~~i~~~~~-pvIlv~NK~Dl~ 499 (666)
+.||||||+.++ ...+...+..+|++++|+|++++. ..+....+..+...+. |+++|+||+|+.
T Consensus 87 i~liDtPG~~~f--------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 87 VSFVDAPGHETL--------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEEEECCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 999999997443 234556677889999999999886 6777777777766664 699999999997
Q ss_pred CCcchhhHHHHHHHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 500 PNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+.... ....+.+...+.. ..+.+++++||++|.|+++|++.|...+.
T Consensus 153 ~~~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 153 SKERA---LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cchhH---HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 53221 1112233333332 23578999999999999999999986543
No 376
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.63 E-value=4.3e-15 Score=148.73 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcc-cccCCCCcccceeEEEEeec--CeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
...+|+++|.+|||||||+++++..... ...++.|++.. ...+..+ ...+.+|||||...+..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 77 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGG------------ 77 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhhhh------------
Confidence 3468999999999999999998765421 12222232222 2222222 36789999999865321
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCc
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~ 317 (666)
.....+..+|++|+|+|.....+.... .+++.+++...+.|+++|+||+|+..
T Consensus 78 --------------------------~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 78 --------------------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred --------------------------hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 122456789999999999876443322 33444444445789999999999864
Q ss_pred cch-hhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGI-MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~-~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .....+. ..++.++++||++|.|+.+++++|.+.+.+
T Consensus 132 ~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred ccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 321 1111222 345678999999999999999999877753
No 377
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.63 E-value=5.5e-15 Score=167.60 Aligned_cols=156 Identities=25% Similarity=0.306 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccc--------cc------CCCCcccceeEEEEeec---C--eeEEEEecCCcccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAI--------VV------DEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLNV 224 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~--------~~------~~~~~t~~~~~~~~~~~---~--~~i~liDTpG~~~~ 224 (666)
..|+|+|++|+|||||+++|+.....+ +. ...|+|.......+.|. + ..+.+|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998653111 11 12367766655555553 3 57899999999752
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCC
Q 005979 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~ 304 (666)
. ..+.+++..||++|+|+|+..+.+.++...+..+.. .+.
T Consensus 84 ~--------------------------------------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~i 123 (595)
T TIGR01393 84 S--------------------------------------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDL 123 (595)
T ss_pred H--------------------------------------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCC
Confidence 1 234467889999999999999988877655544444 478
Q ss_pred cEEEEeccCCCCccchhhH-HHHH-hcCC---CCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 305 FIILAVNKCESPRKGIMQV-SEFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 305 p~ilv~NK~D~~~~~~~~~-~~~~-~~~~---~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
|+++|+||+|+........ .++. .+++ .++++||++|.|+.+|++.|.+.++...
T Consensus 124 piIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 124 EIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred CEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999864322111 1111 2344 3799999999999999999999887553
No 378
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.63 E-value=4.3e-15 Score=143.45 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=106.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+..+|+++|..|+||||++++|.......+.++.|... ..+.+ ++..+.+||.+|...+..+|+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~----~~i~~-~~~~~~~~d~gG~~~~~~~w~----------- 76 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI----EEIKY-KGYSLTIWDLGGQESFRPLWK----------- 76 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE----EEEEE-TTEEEEEEEESSSGGGGGGGG-----------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCccccccc----ceeee-CcEEEEEEeccccccccccce-----------
Confidence 45799999999999999999998654333333333332 23443 678999999999877666653
Q ss_pred HHHHHHhhCCeEEEEeeccccCCH-HHHHHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHH-HHHhcCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITE-QDCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDW 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~-~d~~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~-~~l~~~~~ 523 (666)
.++..+|++|||+|+++.-.. +....+..+.. .++|+++++||.|+...... +++...+. ..+.....
T Consensus 77 ---~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~l~~l~~~~~ 150 (175)
T PF00025_consen 77 ---SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLGLEKLKNKRP 150 (175)
T ss_dssp ---GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTTGGGTTSSSC
T ss_pred ---eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhhhhhcccCCc
Confidence 267899999999999875332 22223333332 37999999999998654222 22222221 11221234
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..++.+||++|.|+.+.+++|.+.
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhc
Confidence 679999999999999999999753
No 379
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=8.4e-15 Score=138.54 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=100.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|+|||||+|+|++..... ...+.++.+.......+.+ ..+.+|||||.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------------- 63 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH----------------- 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH-----------------
Confidence 69999999999999999999876422 2223333333333444444 468999999964311
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|..++-+.... .+...++.. ..+.|+++|+||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 64 ---------------------ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV 122 (162)
T ss_pred ---------------------HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 1122345789999999998765433322 222233322 12689999999999874321
Q ss_pred ---hhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 321 ---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 321 ---~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
..... ....+..++++||.+|.|+.+++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 123 VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11111 223566789999999999999999987654
No 380
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=4e-15 Score=172.84 Aligned_cols=147 Identities=19% Similarity=0.164 Sum_probs=114.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc-----ccC------------CCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----~~~------------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
+.++|+++|++|+|||||+|+|+...... +.+ ..|+|++.....+.+ ++..+++|||||+.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 45789999999999999999998533221 111 358888888888874 788999999999966
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
+. ..+..+++.+|++|+|+|++++...++..++..+.+.++|+++|+||+|+.... .....+
T Consensus 88 ~~--------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~----~~~~~~ 149 (689)
T TIGR00484 88 FT--------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN----FLRVVN 149 (689)
T ss_pred hh--------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHH
Confidence 42 235668899999999999999999999999999999999999999999997532 233455
Q ss_pred HHHHHHhcCCCCCEEEEeCccCC
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQ 535 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~ 535 (666)
.+...+......-++++||..+.
T Consensus 150 ~i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 150 QIKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHhCCCceeEEeccccCCCc
Confidence 66666665444457888887763
No 381
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.5e-15 Score=151.41 Aligned_cols=165 Identities=25% Similarity=0.331 Sum_probs=121.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..-|++||.||+|||||+++++.++ ..+.+||++|..+..+.+.. .+..|++-|.||+.........
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G----------- 226 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG----------- 226 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC-----------
Confidence 4579999999999999999999987 78899999999999999987 4466999999999874433222
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--C-HHHH-HHHHHHHh---hcCCCcEEEEeccCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--T-AADE-EIADWLRK---NYMDKFIILAVNKCE 314 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~-~~d~-~i~~~l~~---~~~~~p~ilv~NK~D 314 (666)
+-.++++.+++|.++++|+|.+..- . .++. .+...|.+ ...++|.++|+||+|
T Consensus 227 --------------------LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 227 --------------------LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred --------------------ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 1256789999999999999987432 1 2222 33334433 236899999999999
Q ss_pred CCccc-hhh-HHHHH--hcCCCC-eeecccCCCChHHHHHHHHHHhhhhc
Q 005979 315 SPRKG-IMQ-VSEFW--SLGFSP-LPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 315 ~~~~~-~~~-~~~~~--~~~~~~-i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
..... ..+ ..... ..+... ++|||.++.|+++|+..+.+.+....
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 54432 211 11121 223332 33999999999999999988887653
No 382
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=4.9e-15 Score=141.30 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=101.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++++.... ...+++++.........+++. .+.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------------- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------------- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----------------
Confidence 489999999999999999987542 334444443333344455554 578999999874110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh---cCCCcEEEEeccCCCCcc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~---~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|...+-+... ..+..++... ..+.|+++|+||+|+...
T Consensus 63 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 63 ---------------------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ---------------------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 112345788999999999986533322 2334444432 247899999999998543
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCC-ChHHHHHHHHHHh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGT-GTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~-Gi~eLl~~I~~~l 355 (666)
.. .....+ ...+..++++||++|. |+++++..+.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 122 RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 21 111222 2356678999999995 9999999998755
No 383
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=9.8e-15 Score=142.58 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=103.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
++|+++|.+|||||||++++++.... ....+..+.+.....+.+++ ..+.+|||||.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---------------- 63 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---------------- 63 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------------
Confidence 36999999999999999999987632 22233333344334445554 457899999975411
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
......+..+|++++|+|..++-+.... .++..+... ....|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 64 ----------------------SLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred ----------------------hhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 2234567889999999999765332221 222333322 2357899999999987432
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+++++++||++|.|++++++.+.+.+..
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 111222 2356789999999999999999999887754
No 384
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.2e-15 Score=159.92 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
.+.|.|-|+||.+-|||||+++|++...+ .....|+|++.....+.+ .|..+++.||||+.-++.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a------------- 216 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA------------- 216 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-------------
Confidence 46789999999999999999999998743 466789999987776654 678999999999965332
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.-.+...-+|++++||-+.+|+.+++.+..+..+. .+.|+++++||||.+...
T Consensus 217 -------------------------MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 217 -------------------------MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGAN 269 (683)
T ss_pred -------------------------HHhccCccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCC
Confidence 12245567999999999999999999999998887 699999999999988755
Q ss_pred hhhH-HHHHhcC---------CCCeeecccCCCChHHHHHHHHH
Q 005979 320 IMQV-SEFWSLG---------FSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~~~~-~~~~~~~---------~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
.... .++...| ..+++|||++|.|++.|.+.+.-
T Consensus 270 pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 4332 2333333 26799999999999999988764
No 385
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=3.6e-15 Score=142.72 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=98.5
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+++|++... ..... .+..+.........+ ..+.+|||||+.......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-------------- 65 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-------------- 65 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc--------------
Confidence 699999999999999999998763 22222 222222222333333 569999999987532211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
...+..+|++++|+|.....+... ..+...+.....+.|+++|+||+|+.....
T Consensus 66 ------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 66 ------------------------PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred ------------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 123477999999999876433222 233444444335799999999999865432
Q ss_pred h--------------hHHH-HHhcCC-CCeeecccCCCChHHHHHHHHH
Q 005979 321 M--------------QVSE-FWSLGF-SPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 321 ~--------------~~~~-~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
. .... ....+. .++++||++|.|+.++++.|.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1 1111 123455 7899999999999999998864
No 386
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=8.1e-15 Score=144.33 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=110.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccc-ccCCCc---ceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~-~~~~~g---tT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
++|+++|.+|+|||||+|+|+|..... .....+ +|+... .+.......+.+|||||+.+... ..+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~------~~~~~l 73 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF------PPDDYL 73 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC------CHHHHH
Confidence 589999999999999999999854221 111112 233221 12212234789999999875321 112221
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcc----------hhhHHHHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN----------QQTATYYEQDVREK 517 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~----------~~~~~~~~~~l~~~ 517 (666)
. ...+..+|++++|.| .+++..+..+++.+.+.++|+++|+||||+..... ....+.+.+.+...
T Consensus 74 -~--~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 74 -E--EMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred -H--HhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 1 113567899888854 45889999999999999999999999999854211 12223333344444
Q ss_pred Hhc--CCCCCEEEEeCc--cCCCHHHHHHHHHHHHHhc
Q 005979 518 LRA--LDWAPIVYSTAI--AGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 518 l~~--~~~~~ii~vSAk--~g~gv~~L~~~i~~~~~~~ 551 (666)
+.. ....+++.+|+. .++|+..|.+.+...+...
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 443 334689999999 6899999999998776543
No 387
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.62 E-value=1.2e-14 Score=138.30 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=100.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++... .....+.+..+.....+.+.+ ..+.+|||||.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------------- 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------------- 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-----------------
Confidence 689999999999999999998763 222234444444444455555 467899999975421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~-~~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|....-+.... .+++.+.... .+.|+++|+||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 64 ---------------------TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ---------------------hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 1223456889999999998764332221 2222232322 3579999999999865331
Q ss_pred ---hhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 321 ---MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ---~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.+...+. ..+.+++++||++|.|+++++..|.+.
T Consensus 123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1222222 345678999999999999999998754
No 388
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=7.1e-15 Score=154.00 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=111.3
Q ss_pred EEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee------------------------cCeeEEEEecCCc
Q 005979 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------------GEHEFMLVDTGGV 221 (666)
Q Consensus 166 V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~i~liDTpG~ 221 (666)
|+|+|.||||||||||+|++.. +.++++|++|.++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999987 68899999999998876654 2257999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC------------CCHH
Q 005979 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------------LTAA 289 (666)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~------------~~~~ 289 (666)
........ -+..+++..+++||++++|+|+... ..+.
T Consensus 80 v~ga~~~~-------------------------------glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~ 128 (318)
T cd01899 80 VPGAHEGK-------------------------------GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPL 128 (318)
T ss_pred CCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHH
Confidence 64221111 1346677889999999999998631 1111
Q ss_pred -HH-----HHHH--------------------------------------------HHHh--------------------
Q 005979 290 -DE-----EIAD--------------------------------------------WLRK-------------------- 299 (666)
Q Consensus 290 -d~-----~i~~--------------------------------------------~l~~-------------------- 299 (666)
+. ++.. .|+.
T Consensus 129 ~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T cd01899 129 EDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLAR 208 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHH
Confidence 11 1111 0100
Q ss_pred --hcCCCcEEEEeccCCCCccchhhHHHHHhc-CCCCeeecccCCCChHHHHH-HHHHHhhhh
Q 005979 300 --NYMDKFIILAVNKCESPRKGIMQVSEFWSL-GFSPLPISAISGTGTGELLD-LVCSELKKV 358 (666)
Q Consensus 300 --~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~-~~~~i~iSa~~g~Gi~eLl~-~I~~~l~~~ 358 (666)
....+|+|+|+||+|+.............. ...++++||..+.|+.+|.+ .+.+++++.
T Consensus 209 ~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 209 ALRKRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HHHhcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 013579999999999754322111111122 23689999999999999998 699999853
No 389
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.62 E-value=4.9e-15 Score=152.46 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=93.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcc-----c------------ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRA-----I------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~-----~------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
.|+++||+|+|||||+++|+..... . .....|+|.+.....+.|.+.++.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 4899999999999999999742111 1 1234578888888889999999999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
...+.++++.+|++++|+|+..+...++..+++.++. .++|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~i 120 (270)
T cd01886 78 -----------------------------------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRI 120 (270)
T ss_pred -----------------------------------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 2345678899999999999999999998888888877 578999
Q ss_pred EEeccCCCCcc
Q 005979 308 LAVNKCESPRK 318 (666)
Q Consensus 308 lv~NK~D~~~~ 318 (666)
+++||+|+...
T Consensus 121 vviNK~D~~~a 131 (270)
T cd01886 121 AFVNKMDRTGA 131 (270)
T ss_pred EEEECCCCCCC
Confidence 99999998753
No 390
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1.1e-14 Score=141.48 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=100.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++.... ....|.+..+.....+.+++ ..+.+|||+|...+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~----------------- 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI----------------- 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-----------------
Confidence 6899999999999999999887532 12233333334334455565 468999999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEeccCCCCcc--
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK-- 318 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~-~~~p~ilv~NK~D~~~~-- 318 (666)
......+..+|++++|+|..+..+..+. .++..++... ...| ++|+||+|+...
T Consensus 64 ---------------------~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~ 121 (182)
T cd04128 64 ---------------------NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP 121 (182)
T ss_pred ---------------------HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccccc
Confidence 1122456889999999999765443331 2333343321 2345 688999998521
Q ss_pred --ch---h-hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 --GI---M-QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 --~~---~-~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. . ....+ ...+..++++||++|.|++++++.+.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 122 PEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred chhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 10 1 11122 2345678999999999999999999877653
No 391
>PLN03110 Rab GTPase; Provisional
Probab=99.62 E-value=1.1e-14 Score=145.68 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=108.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++... .....+.+..+.....+.+++ ..+.||||||...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~---------------- 74 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY---------------- 74 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 45899999999999999999998763 223344444455455556655 47899999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.......++.++++|+|+|....-+.... .++..++.. ..+.|+++|+||+|+...
T Consensus 75 ----------------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 75 ----------------------RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred ----------------------HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 12334567889999999998765333321 233333332 136899999999998543
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
... ....+ ...+++++++||++|.|++++++.|...+...
T Consensus 133 ~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 11111 23467899999999999999999998877653
No 392
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.6e-14 Score=151.29 Aligned_cols=87 Identities=29% Similarity=0.274 Sum_probs=67.3
Q ss_pred EEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-----------------------CCCceEEEEEcCCC
Q 005979 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-----------------------PEGQKFRLIDTAGI 430 (666)
Q Consensus 374 I~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-----------------------~~~~~~~liDTpG~ 430 (666)
|+++|.||||||||+|+|++.. ..++++|++|+++....... ..+..+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999775 57899999998887654332 12247999999999
Q ss_pred ccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc
Q 005979 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (666)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~ 468 (666)
.... ........+.+.+++.||++++|+|++
T Consensus 80 v~ga-------~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGA-------HEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 6421 112223456788999999999999996
No 393
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.62 E-value=5.4e-15 Score=145.58 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=98.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC----CC--ceEEEEEcCCCccccccccCCchhhH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP----EG--QKFRLIDTAGIRKRAAIASSGSTTEA 445 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~----~~--~~~~liDTpG~~~~~~~~~~~~~~e~ 445 (666)
.||+++|.++||||||++++++.. +.....+++..+.....+.+. ++ ..+.||||+|..++..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--------- 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--------- 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH---------
Confidence 389999999999999999999764 333333333333322233321 12 36899999998654221
Q ss_pred HHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----------------------hCCcEEEEEecccCCCCc
Q 005979 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----------------------EGKGCLIVVNKWDTIPNK 502 (666)
Q Consensus 446 ~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----------------------~~~pvIlv~NK~Dl~~~~ 502 (666)
...+++.+|++|+|+|++++.+.+.+. |+..+.. .+.|+|||+||+|+.+.+
T Consensus 71 -----~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 71 -----RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -----HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 234789999999999999988877765 6666654 257999999999997643
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCC
Q 005979 503 NQQTATYYEQDVREKLRALDWAPIVYSTAIAGQS 536 (666)
Q Consensus 503 ~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~g 536 (666)
...... ...-...++...++|.+..+++.+..
T Consensus 146 ~~~~~~--~~~~~~~ia~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 146 ESSGNL--VLTARGFVAEQGNAEEINLNCTNGRL 177 (202)
T ss_pred ccchHH--HhhHhhhHHHhcCCceEEEecCCccc
Confidence 222111 11113344555678899999887643
No 394
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=2e-14 Score=136.50 Aligned_cols=159 Identities=26% Similarity=0.358 Sum_probs=107.4
Q ss_pred EEEEcCCCCchhHHHHHHhc-CCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 166 VAIVGRPNVGKSALFNRLVG-GNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 166 V~ivG~~n~GKSsL~n~l~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
|+++|.+|+|||||+|+|++ ......+..+++|...... .++ ..+.++||||+....... ...+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~-~~~~----------- 66 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSK-EVKE----------- 66 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCH-HHHH-----------
Confidence 78999999999999999994 3334566667777655442 222 389999999986532211 0000
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh--
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-- 322 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-- 322 (666)
.+...+ ..+......++++++++|........+..+.+++.. .+.|+++|+||+|+.......
T Consensus 67 ------------~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~ 131 (170)
T cd01876 67 ------------KWGKLI-EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKA 131 (170)
T ss_pred ------------HHHHHH-HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHH
Confidence 011111 122233356789999999988777777788888877 478999999999986432211
Q ss_pred ---HHHHH---hcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 323 ---VSEFW---SLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 323 ---~~~~~---~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
..... ....+++++||+++.|+.++++.|.+.
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 11111 122368899999999999999998765
No 395
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.61 E-value=4.5e-15 Score=148.63 Aligned_cols=142 Identities=23% Similarity=0.230 Sum_probs=99.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc------------------------------ccccCCCCcccceeEEEEeecCeeEE
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEHEFM 214 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~~i~ 214 (666)
.|+++||+|+|||||+++|+.... .......|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 01122457888988888899999999
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-------CC
Q 005979 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-------LT 287 (666)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~-------~~ 287 (666)
+|||||+..+ ...+..++..+|++++|+|+..+ ..
T Consensus 81 liDtpG~~~~--------------------------------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 81 ILDAPGHRDF--------------------------------------VPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred EEECCChHHH--------------------------------------HHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 9999998531 12344667889999999999873 44
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEeccCCCCcc----c-hhhH----HH-HHhcC-----CCCeeecccCCCChH
Q 005979 288 AADEEIADWLRKNYMDKFIILAVNKCESPRK----G-IMQV----SE-FWSLG-----FSPLPISAISGTGTG 345 (666)
Q Consensus 288 ~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~----~-~~~~----~~-~~~~~-----~~~i~iSa~~g~Gi~ 345 (666)
.+.......+... ..+|+++|+||+|+... . .... .. +...+ .+++++||.+|.|+.
T Consensus 123 ~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 123 GQTREHALLARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cchHHHHHHHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 4555555555432 23789999999999731 1 1111 11 22333 358999999999987
No 396
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.7e-15 Score=129.48 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=110.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcc-eeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGT-TRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gt-T~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
.+|-.++|+-|||||.|+..+.... ...+.|.| ....-...++. .|. ++++|||+|+.+|+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriiev-sgqkiklqiwdtagqerfra------------ 75 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRA------------ 75 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHH------------
Confidence 4788999999999999999998543 24444432 22332333333 344 789999999977643
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
-+..++|++.++++|+|++.+.+..++. |+...+.. +..+++++||.||...+.....+ .+.+++.++
T Consensus 76 --vtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yee------ak~faeeng 147 (215)
T KOG0097|consen 76 --VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEE------AKEFAEENG 147 (215)
T ss_pred --HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHH------HHHHHhhcC
Confidence 3456899999999999999887766654 44444443 34588999999997665543322 456677788
Q ss_pred CCEEEEeCccCCCHHHHHHHHH-HHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAE-MVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~-~~~~ 549 (666)
..++++|||+|.||++.|-... ++++
T Consensus 148 l~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred eEEEEecccccCcHHHHHHHHHHHHHH
Confidence 8999999999999998775443 4444
No 397
>PRK12736 elongation factor Tu; Reviewed
Probab=99.61 E-value=1.1e-14 Score=158.32 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=114.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc------c---------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++... . ......|+|.+.....+..++..+.+|||||+.++
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f--- 88 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY--- 88 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH---
Confidence 45799999999999999999987310 0 11125588888766555566788999999998531
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ 306 (666)
.......+..+|++++|+|+..+...++.+++.++.. .+.| +
T Consensus 89 -----------------------------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~ 131 (394)
T PRK12736 89 -----------------------------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYL 131 (394)
T ss_pred -----------------------------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEE
Confidence 1334566788999999999999999999999998877 4777 6
Q ss_pred EEEeccCCCCccch-hh-----HHHH-HhcC-----CCCeeecccCCC--------ChHHHHHHHHHHhhh
Q 005979 307 ILAVNKCESPRKGI-MQ-----VSEF-WSLG-----FSPLPISAISGT--------GTGELLDLVCSELKK 357 (666)
Q Consensus 307 ilv~NK~D~~~~~~-~~-----~~~~-~~~~-----~~~i~iSa~~g~--------Gi~eLl~~I~~~l~~ 357 (666)
|+|+||+|+..... .. ...+ ...+ .+++++||.+|. ++.+|++.|.+.++.
T Consensus 132 IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 132 VVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 78999999874321 11 1111 1233 368999999983 678888888887763
No 398
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=9.2e-15 Score=140.58 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=100.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|+|||||++++++... ...+.++..+.......+++. .+.+|||||.........
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------- 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------- 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc-------------
Confidence 699999999999999999998763 222333333333334455554 467999999865322211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
..+..+|++++|+|..+.-+..+. .+...++....+.|+++|+||+|+.+...
T Consensus 67 -------------------------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 67 -------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred -------------------------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 235778999999998765443332 34455554446799999999999854321
Q ss_pred h---------------hHHH-HHhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 321 M---------------QVSE-FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 321 ~---------------~~~~-~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. .... ....+. .++++||++|.|++++++.+...
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 0 0111 123454 57899999999999999988764
No 399
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.4e-14 Score=139.12 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=102.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++... .....+..+.+.....+.+++ ..+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK--------------- 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---------------
Confidence 5799999999999999999987652 222233333333344445555 5789999999754110
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
......++.+|++++|+|...+.+.... .+.+.+... ..+.|+++|+||+|+...
T Consensus 67 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 67 ----------------------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred ----------------------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 1123456789999999999865444432 233333332 146899999999998643
Q ss_pred chh---hHHHHH-hcCCCCeeecccC---CCChHHHHHHHHHHh
Q 005979 319 GIM---QVSEFW-SLGFSPLPISAIS---GTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~---~~~~~~-~~~~~~i~iSa~~---g~Gi~eLl~~I~~~l 355 (666)
... ....+. ..+.+++++||++ +.++.+++..+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 125 IQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 221 112222 2456789999999 889999998887655
No 400
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.61 E-value=1e-14 Score=134.81 Aligned_cols=150 Identities=22% Similarity=0.226 Sum_probs=100.8
Q ss_pred EecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHH
Q 005979 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (666)
Q Consensus 376 vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (666)
++|.+|+|||||+|++++..... .....+..+......... .+..+.+|||||+.... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR--------------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHH--------------hHHHHH
Confidence 58999999999999999765421 222222233333333321 25589999999975421 122457
Q ss_pred HhhCCeEEEEeeccccCCHHHHHHH-----HHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 455 IRRSDVVALVIEAMACITEQDCRIA-----ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 455 i~~advvllViDa~~~~t~~d~~i~-----~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++.+|++++|+|++++.+..+...+ ......++|+++|+||+|+......... ............+++++
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE-----ELAEQLAKELGVPYFET 140 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH-----HHHHHHHhhcCCcEEEE
Confidence 7899999999999987655554432 2233458999999999999754332111 01223334456899999
Q ss_pred eCccCCCHHHHHHHHH
Q 005979 530 TAIAGQSVDKIIVAAE 545 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~ 545 (666)
||++|.|+.+++++|.
T Consensus 141 s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 141 SAKTGENVEELFEELA 156 (157)
T ss_pred ecCCCCChHHHHHHHh
Confidence 9999999999999875
No 401
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=1.1e-14 Score=139.86 Aligned_cols=149 Identities=19% Similarity=0.295 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|++|||||||+++|.+.......+..|. ....+.+.+..+.+|||||....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~----~~~~i~~~~~~~~~~D~~G~~~~------------------ 71 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQSDGFKLNVWDIGGQRAI------------------ 71 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCc----ceEEEEECCEEEEEEECCCCHHH------------------
Confidence 56899999999999999999999754333333332 23345667889999999997531
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~--~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+...++.+|++++|+|+...-.. ....+...+.. ...+.|+++++||+|+....
T Consensus 72 --------------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 72 --------------------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred --------------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 12233556889999999998753211 11222222221 11468999999999986532
Q ss_pred h-hhHHHHHhcC------CCCeeecccCCCChHHHHHHHHH
Q 005979 320 I-MQVSEFWSLG------FSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 320 ~-~~~~~~~~~~------~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
. .......... +.++++||++|.|+.+++++|.+
T Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1 1122222111 13679999999999999999864
No 402
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=6.8e-15 Score=143.93 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=100.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++++..... ...|..... .......++ ..+.+|||||...+....
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~-------------- 65 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFEN-YVHDIFVDGLHIELSLWDTAGQEEFDRLR-------------- 65 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceee-eEEEEEECCEEEEEEEEECCCChhccccc--------------
Confidence 68999999999999999999875322 112222222 122233444 568999999986532211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
...+..+|++++|+|..+.-+.... .++..+.....+.|+++|+||+|+.....
T Consensus 66 ------------------------~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 66 ------------------------SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred ------------------------cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 1245789999999998765443322 24445554445789999999999865321
Q ss_pred hh---------------HHHHH-hcC-CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 321 MQ---------------VSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 321 ~~---------------~~~~~-~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. ...+. ..+ ..++++||++|.|++++++.|.+.+..
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 10 11121 233 468999999999999999999876653
No 403
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.61 E-value=9.2e-15 Score=145.91 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=100.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||++++++..... ..+ |.........+....+.+|||||...+..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~------------------ 59 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVS--TVGGAFYLKQWGPYNISIWDTAGREQFHG------------------ 59 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCC--ccceEEEEEEeeEEEEEEEeCCCcccchh------------------
Confidence 68999999999999999999876422 222 22222223344567799999999864221
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCc-----
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR----- 317 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~----- 317 (666)
.....+..+|++|+|+|..+.-+.... .+....+....+.|+|+|+||+|+..
T Consensus 60 --------------------l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 60 --------------------LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALA 119 (220)
T ss_pred --------------------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccc
Confidence 122456889999999999875443332 22233332224679999999999864
Q ss_pred --------------cch---hhHHHHH-hcC--------------CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 --------------KGI---MQVSEFW-SLG--------------FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 --------------~~~---~~~~~~~-~~~--------------~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .+...+. +.+ .+++++||++|.|+.+++..+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 111 1111222 222 468999999999999999999876653
No 404
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.61 E-value=1.6e-14 Score=139.37 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=103.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+.+++.... ...+..+..+.....+.+++ .++.+|||+|...+....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~------------- 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR------------- 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccc-------------
Confidence 4799999999999999999997653 22222222222233344555 568999999987643322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
...++.+|++|+|+|..+.-+.+.. .+...++....+.|+++|+||+|+..+.
T Consensus 67 -------------------------~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 67 -------------------------PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred -------------------------hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 2356889999999999876555442 3444454434578999999999985431
Q ss_pred -----------h--hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHh
Q 005979 320 -----------I--MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 -----------~--~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. .+...+ ...+. .++++||++|.|+.++++.+.+.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1 111222 23455 479999999999999999998755
No 405
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=1.7e-14 Score=139.68 Aligned_cols=156 Identities=22% Similarity=0.150 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++++... +....+++.........+.+ ..+.+|||||.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------- 63 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS---------------- 63 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH----------------
Confidence 3699999999999999999998752 23333344333344445554 457899999985421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHH-Hhh-cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL-RKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l-~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
......+..++.+++|+|.....+.+.. .+...+ +.. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 64 ----------------------ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred ----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 1222456789999999998864332221 222222 221 146799999999998643
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
... ....+ ...+.+++++||++|.|+.+++.++.+.+....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 211 11112 234567899999999999999999998776543
No 406
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.61 E-value=1.5e-14 Score=164.29 Aligned_cols=157 Identities=23% Similarity=0.293 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc--------c------cCCCCcccceeEEEEeec-----CeeEEEEecCCccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~--------~------~~~~~~t~~~~~~~~~~~-----~~~i~liDTpG~~~ 223 (666)
...|+|+||.++|||||+++|+.....+ + ....|+|.......+.|. +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4579999999999999999997632111 1 123466766655555553 46799999999975
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+. ..+.+++..||++|+|+|+..+...++...+.++.. .+
T Consensus 87 F~--------------------------------------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~ 126 (600)
T PRK05433 87 FS--------------------------------------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--ND 126 (600)
T ss_pred HH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CC
Confidence 21 234467889999999999999988887766655544 47
Q ss_pred CcEEEEeccCCCCccchhhH-HHHH-hcCC---CCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 304 KFIILAVNKCESPRKGIMQV-SEFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~~-~~~~-~~~~---~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.|+++|+||+|+........ .++. .+++ .++++||++|.|+.+|++.|.+.++...
T Consensus 127 lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 127 LEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 89999999999865332211 1221 1344 3799999999999999999999887553
No 407
>PRK10218 GTP-binding protein; Provisional
Probab=99.61 E-value=1.3e-14 Score=163.89 Aligned_cols=157 Identities=19% Similarity=0.269 Sum_probs=120.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccc---------------cCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+|+|++|+|||||+++|+.....+. ....|+|.......+.|++..+.+|||||+.++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 45799999999999999999986422211 2245777777777788899999999999987521
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
..+..+++.+|++++|+|+..+...++..++..+.. .+.|++
T Consensus 83 ------------------------------------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~I 124 (607)
T PRK10218 83 ------------------------------------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPI 124 (607)
T ss_pred ------------------------------------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEE
Confidence 234567899999999999999988888888887766 588999
Q ss_pred EEeccCCCCccchh----hHHHHH-h-------cCCCCeeecccCCC----------ChHHHHHHHHHHhhhhc
Q 005979 308 LAVNKCESPRKGIM----QVSEFW-S-------LGFSPLPISAISGT----------GTGELLDLVCSELKKVE 359 (666)
Q Consensus 308 lv~NK~D~~~~~~~----~~~~~~-~-------~~~~~i~iSa~~g~----------Gi~eLl~~I~~~l~~~~ 359 (666)
+|+||+|+...... +..+++ . ..++++++||.+|. |+..|++.|...++...
T Consensus 125 VviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 125 VVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred EEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 99999998654321 112221 1 24578999999998 68899999999988553
No 408
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=1e-14 Score=140.38 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=101.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|+|||||++++.+.. ....+.+++.+.....+.+++ ..+.+|||||........
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 65 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR-------------- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc--------------
Confidence 68999999999999999998764 233455555444444455555 467899999986532221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccc-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~- 319 (666)
...++.+|++++|+|..+..+... ..+...++....+.|+++|+||+|+....
T Consensus 66 ------------------------~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 66 ------------------------PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred ------------------------ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 134578999999999986544333 23444444433468999999999986421
Q ss_pred --------------hhhHHHHH-hcCC-CCeeecccCCCChHHHHHHHH
Q 005979 320 --------------IMQVSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 320 --------------~~~~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
......+. ..+. .++++||++|.|+++|++.+.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 01112222 3455 789999999999999998764
No 409
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.61 E-value=1.3e-14 Score=164.08 Aligned_cols=153 Identities=21% Similarity=0.281 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec------------------CeeEEEEecCCccc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------------EHEFMLVDTGGVLN 223 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~i~liDTpG~~~ 223 (666)
+.|.|+++||+|+|||||+|+|++.... .....+.|++.......+. -..+.+|||||+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA-AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc-cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4689999999999999999999987522 2222344444322111110 11378999999975
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+. ....+.+..+|++++|+|+..++.+++.+.+.+++. .+
T Consensus 84 f~--------------------------------------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~ 123 (586)
T PRK04004 84 FT--------------------------------------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKR--RK 123 (586)
T ss_pred HH--------------------------------------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cC
Confidence 32 122356688999999999999998998888888876 58
Q ss_pred CcEEEEeccCCCCccch------------------hh--------H-HHHHhcC---------------CCCeeecccCC
Q 005979 304 KFIILAVNKCESPRKGI------------------MQ--------V-SEFWSLG---------------FSPLPISAISG 341 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~------------------~~--------~-~~~~~~~---------------~~~i~iSa~~g 341 (666)
.|+++|+||+|+..... .. . ..+...| .+++++||.+|
T Consensus 124 vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG 203 (586)
T PRK04004 124 TPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG 203 (586)
T ss_pred CCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC
Confidence 89999999999852100 00 0 0111112 35799999999
Q ss_pred CChHHHHHHHHHHh
Q 005979 342 TGTGELLDLVCSEL 355 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l 355 (666)
.|+.+|++.+....
T Consensus 204 eGi~dLl~~i~~~~ 217 (586)
T PRK04004 204 EGIPDLLMVLAGLA 217 (586)
T ss_pred CChHHHHHHHHHHH
Confidence 99999999886544
No 410
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.7e-16 Score=137.58 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=111.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC------Cc----eEEEEEcCCCccccccccCC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE------GQ----KFRLIDTAGIRKRAAIASSG 440 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~------~~----~~~liDTpG~~~~~~~~~~~ 440 (666)
.+|...+|++||||||++-++... .+...-+..+.+|.....+.+.. |+ .++||||+|+++|.++.
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~-~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT--- 84 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDG-KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT--- 84 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCC-cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH---
Confidence 457788999999999999888743 34444455566666655554411 11 68999999998876542
Q ss_pred chhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHH
Q 005979 441 STTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (666)
Q Consensus 441 ~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~ 515 (666)
-..+|.|=++|+++|.++..++.+.+ |+.+++.+ +.-+|+++||+||.+.+... +.-.
T Consensus 85 -----------TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs------~~qa 147 (219)
T KOG0081|consen 85 -----------TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS------EDQA 147 (219)
T ss_pred -----------HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh------HHHH
Confidence 33678999999999998866655543 66776654 45599999999997654332 1223
Q ss_pred HHHhcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 516 EKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 516 ~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..++...++|+|++||-+|.||++..+.+...
T Consensus 148 ~~La~kyglPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence 34555567999999999999999877766544
No 411
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.60 E-value=1.3e-14 Score=140.05 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+.++++... ...+..+..+.....+.+++ ..+.+|||||......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR--------------- 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 3699999999999999999997652 22333333232222334455 5688999999764221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++|+|+|..+.-+.... .+...+.....+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 65 -----------------------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred -----------------------hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 112356789999999999865443332 2344444433578999999999985421
Q ss_pred h------------h---hHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 320 I------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~------------~---~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. . +...+ ...+. .++++||++|.|++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 1 0 11112 13443 67999999999999999988753
No 412
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=1.6e-14 Score=144.89 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=99.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcc-cceeEEEEeec--CeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
+|+++|.+|||||||++++++.... ...+..+. .+.....+.++ ...+.+|||||... ..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~-------------- 64 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WT-------------- 64 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HH--------------
Confidence 6999999999999999999765532 11222111 13333334443 36689999999861 00
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHH-hccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~-~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
.. ..+. .+|++++|+|+.+.-+... ..+...+... ..+.|+++|+||+|+..
T Consensus 65 ---------------------~~---~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 65 ---------------------ED---SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred ---------------------Hh---HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 01 2234 8999999999987533322 2344444442 24689999999999865
Q ss_pred cchhh---HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..... ...+ ...+..++++||.+|.|++++++.|...+..
T Consensus 121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 32211 1112 2345678999999999999999999987753
No 413
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.60 E-value=1.6e-14 Score=135.63 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=97.3
Q ss_pred EEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCC
Q 005979 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (666)
Q Consensus 166 V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G 245 (666)
|+++|++|||||||+|+|.+... .....+.+. ........++..+.+|||||....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~--------------------- 57 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVG--FNMRKVTKGNVTLKVWDLGGQPRF--------------------- 57 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCC--cceEEEEECCEEEEEEECCCCHhH---------------------
Confidence 78999999999999999999753 223333333 222344566788999999997531
Q ss_pred CchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEeccCCCCccchh-
Q 005979 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGIM- 321 (666)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~~- 321 (666)
.......+..+|++++|+|+....... ...+.+++.. ...++|+++|+||+|+......
T Consensus 58 -----------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 58 -----------------RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred -----------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 133445678899999999987532211 1122232221 1246899999999998654321
Q ss_pred hHHHHHh------cCCCCeeecccCCCChHHHHHHHHH
Q 005979 322 QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 322 ~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
....... ...+++++||++|.|+.+++++|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1122221 1235799999999999999998864
No 414
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.60 E-value=8e-15 Score=140.43 Aligned_cols=147 Identities=24% Similarity=0.214 Sum_probs=97.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||+++|.+.......++.|.+ ...+.+.+..+.++||||...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~--------------------- 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN--------------------- 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHH---------------------
Confidence 4889999999999999999986322223333332 334566788999999999753
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCccc-h
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG-I 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~~~-~ 320 (666)
+...+..++..+|+++||+|++...+... ...+..+... ..++|+++|+||+|+.... .
T Consensus 56 -----------------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 56 -----------------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred -----------------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 12334567889999999999986533222 1222222221 2478999999999987543 1
Q ss_pred hhHHHH---Hh----cC--CCCeeecccCC------CChHHHHHHHHH
Q 005979 321 MQVSEF---WS----LG--FSPLPISAISG------TGTGELLDLVCS 353 (666)
Q Consensus 321 ~~~~~~---~~----~~--~~~i~iSa~~g------~Gi~eLl~~I~~ 353 (666)
...... .. .+ +.++++||.+| .|+.+.+++|..
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 111111 11 12 25678999998 899999999863
No 415
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.60 E-value=2.3e-14 Score=137.27 Aligned_cols=153 Identities=15% Similarity=0.071 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||++++++... .....+..+.+.....+.+++ ..+.+|||||.....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------------- 68 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR--------------- 68 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH---------------
Confidence 45899999999999999999997653 222233333333333445555 457889999975421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-----cCCCcEEEEeccCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCE 314 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-----~~~~p~ilv~NK~D 314 (666)
......++.+|++++|+|..+.-+.... .+...+... ..+.|+++|+||+|
T Consensus 69 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 69 -----------------------SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred -----------------------HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 2233456889999999998765322221 122222111 13579999999999
Q ss_pred CCccch--hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 315 SPRKGI--MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 315 ~~~~~~--~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
+..... .+...+ ...+. .++++||++|.|+.++++.+.+.
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 864321 122223 23454 68999999999999999998754
No 416
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=2.4e-14 Score=137.13 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++.+... ...+..++.+.....+.+++ ..+.+|||||...+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA--------------- 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh---------------
Confidence 4699999999999999999997652 22333333333333344544 5678999999865322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~--~~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..++.+++|+|...+-+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 65 -----------------------MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -----------------------hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 122446779999999998764332221 22333322 1247899999999998653
Q ss_pred chh---hHHHH-HhcC-CCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GIM---QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~---~~~~~-~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ....+ ...+ .+++++||++|.|++++++.+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 221 11111 2344 5789999999999999999998654
No 417
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=2.6e-14 Score=142.29 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++.... ....+.+..+.....+.+++ ..+.+|||||....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~-~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~---------------- 68 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------------- 68 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999987532 22333444444444555655 45789999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++++|+|....-+.... .+...+.. .....|+++|+||+|+...
T Consensus 69 ----------------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 69 ----------------------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred ----------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 12234556789999999999764332221 22222222 2246899999999998653
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ....+ ...+++++++||++|.|+.++++++.+.+-
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 211 11222 235678899999999999999988876654
No 418
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.6e-14 Score=150.39 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=117.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCc------------------------------ccccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDR------------------------------TIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~------------------------------~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
..+++++|++++|||||+-+|+-.-. .......|.|.+.....++. +..
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~ 85 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKY 85 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCc
Confidence 46899999999999999999983221 11222348999998888875 677
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-------CCHHHHHHHHHHHHhCC-cEEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-------~t~~d~~i~~~i~~~~~-pvIlv 492 (666)
.+.|+|+||+++| +..+...+..||+++||+|+..+ ..-|..+.+-.++-.|+ .+|++
T Consensus 86 ~~tIiDaPGHrdF--------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 86 NFTIIDAPGHRDF--------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred eEEEeeCCchHHH--------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 8999999998775 44556677889999999999887 45566665555555665 58999
Q ss_pred EecccCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHH
Q 005979 493 VNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L 540 (666)
+||+|+++ ....+++++...+...+..++ .+++++|||.+|.|+.+.
T Consensus 152 vNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 99999987 556777777777766554443 367999999999998764
No 419
>PRK12735 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.7e-14 Score=157.06 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=112.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC------Ccc---------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++. ... ......|+|.+.....+..++.++.++||||+..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~---- 87 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD---- 87 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH----
Confidence 357999999999999999999862 111 1122457888876666666778899999999853
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
+...+...+..+|++++|+|+..+...++.+++..+.. .+.|.+
T Consensus 88 ----------------------------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~i 131 (396)
T PRK12735 88 ----------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYI 131 (396)
T ss_pred ----------------------------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeE
Confidence 12445577789999999999999888888888888776 477865
Q ss_pred -EEeccCCCCccch-h-----hHHHHH-hcC-----CCCeeecccCCC----------ChHHHHHHHHHHhh
Q 005979 308 -LAVNKCESPRKGI-M-----QVSEFW-SLG-----FSPLPISAISGT----------GTGELLDLVCSELK 356 (666)
Q Consensus 308 -lv~NK~D~~~~~~-~-----~~~~~~-~~~-----~~~i~iSa~~g~----------Gi~eLl~~I~~~l~ 356 (666)
+|+||+|+..... . +...+. ..+ ++++++||.+|. |+.+|++.|...++
T Consensus 132 ivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5799999874321 1 111121 222 467999999984 67889998887765
No 420
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.59 E-value=1.5e-14 Score=158.88 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=114.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcc------------------------------cccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
.++|+++|+.++|||||+.+|+..... ......|+|.+.....+.. +++
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~~ 85 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TKY 85 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CCE
Confidence 468999999999999999999732110 0111238888887777764 788
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCC-------HHHHHHHHHHHHhCCc-EEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT-------EQDCRIAERIEQEGKG-CLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t-------~~d~~i~~~i~~~~~p-vIlv 492 (666)
.++++||||+.+| ...+..+++.+|++|+|+|+.++.- .+..+.+..+...++| +|++
T Consensus 86 ~i~liDtPGh~df--------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 86 YCTVIDAPGHRDF--------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred EEEEEECCCHHHH--------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 9999999998654 3445667899999999999988621 4666777777778885 6889
Q ss_pred EecccCCCC-cchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHH
Q 005979 493 VNKWDTIPN-KNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 493 ~NK~Dl~~~-~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~ 539 (666)
+||+|+... .....+++..+++...+...+ .++++++||++|.|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999998631 222445556677777776654 47899999999999854
No 421
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=141.96 Aligned_cols=178 Identities=18% Similarity=0.156 Sum_probs=121.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
+.+|.++|.+|+|||||+|+|++.+...++..+-+++........ .++..++||||||+.+... -.......
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~-~~~~~l~lwDtPG~gdg~~-------~D~~~r~~ 110 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS-YDGENLVLWDTPGLGDGKD-------KDAEHRQL 110 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh-ccccceEEecCCCcccchh-------hhHHHHHH
Confidence 467889999999999999999977666666555444333322222 4678999999999976321 12223445
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH--hCCcEEEEEecccCCCCc----------chhh---HHHHHHHHH
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ--EGKGCLIVVNKWDTIPNK----------NQQT---ATYYEQDVR 515 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~--~~~pvIlv~NK~Dl~~~~----------~~~~---~~~~~~~l~ 515 (666)
...++...|.+++++|+.++.-.-|.++++.+.- .++++++|+|.+|...+. .... .++-.+.+.
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 6678899999999999988765556666665544 358999999999976431 0111 111122233
Q ss_pred HHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCch
Q 005979 516 EKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTA 558 (666)
Q Consensus 516 ~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~ 558 (666)
+.+.. --|++++|+..++|++.|...+.++.....+..-..
T Consensus 191 ~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~ 231 (296)
T COG3596 191 RLFQE--VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAA 231 (296)
T ss_pred HHHhh--cCCeEEeccccCccHHHHHHHHHHhCcccccchhhh
Confidence 44433 358999999999999999999998876544444333
No 422
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=1.8e-14 Score=143.44 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=103.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|.+|||||||+++|++...... ..+.++.+.....+.+ ++ ..+.+|||||.....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------------- 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR--------------- 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH---------------
Confidence 5799999999999999999998764332 2334444444434444 23 468899999975411
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|....-+.... .+...+... ....|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 67 -----------------------SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred -----------------------HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 2233567889999999998764332221 222222221 12467899999999865
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... ....+ ..++..++++||++|.|++++++.|.+.+.+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 124 QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3211 11222 23567899999999999999999999877644
No 423
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=2.3e-14 Score=138.71 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++.+... . ..+.++..+.....+.+++ ..+.+|||+|...+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~-------------- 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-P-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV-------------- 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-C-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc--------------
Confidence 3699999999999999999998752 2 2232222222222344555 45889999998643221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc-
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK- 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~- 318 (666)
....++.+|++|+|+|..+.-+... ..+...+++...+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 66 ------------------------RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred ------------------------chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 1135688999999999987655443 2345555554457899999999998531
Q ss_pred --------------chhhHHHH-HhcCC-CCeeecccCCCC-hHHHHHHHHH
Q 005979 319 --------------GIMQVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (666)
Q Consensus 319 --------------~~~~~~~~-~~~~~-~~i~iSa~~g~G-i~eLl~~I~~ 353 (666)
...+...+ ...+. .++++||++|.| +.+++..+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 01112222 23565 689999999995 9999998876
No 424
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.59 E-value=3.4e-14 Score=142.34 Aligned_cols=149 Identities=18% Similarity=0.218 Sum_probs=102.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccc------c-------cCCCCcccc------------------------eeEEEEe
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAI------V-------VDEPGVTRD------------------------RMYGRSF 207 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~------~-------~~~~~~t~~------------------------~~~~~~~ 207 (666)
+|+++|+.++|||||+++|+...... . ....|.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999998532100 0 000111110 0012234
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHH--hccEEEEEecCCCC
Q 005979 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAG 285 (666)
Q Consensus 208 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~--~ad~il~VvD~~~~ 285 (666)
..++.+.++||||+..+ .+.+..++. .+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~--------------------------------------~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERY--------------------------------------LKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHH--------------------------------------HHHHHHhhcccCCCEEEEEEECCCC
Confidence 45778999999998641 123334443 68999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hH----HHHHh-------------------------c--CCCC
Q 005979 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV----SEFWS-------------------------L--GFSP 333 (666)
Q Consensus 286 ~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~----~~~~~-------------------------~--~~~~ 333 (666)
...++..++.++.. .+.|+++|+||+|+...... .. ..+.. . ..++
T Consensus 123 ~~~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi 200 (224)
T cd04165 123 IIGMTKEHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI 200 (224)
T ss_pred CcHHHHHHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE
Confidence 99999999999987 57899999999998654321 11 11111 0 1267
Q ss_pred eeecccCCCChHHHHHHHHH
Q 005979 334 LPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 334 i~iSa~~g~Gi~eLl~~I~~ 353 (666)
+++||.+|.|+++|+..|..
T Consensus 201 ~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 201 FQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEeeCCCccCHHHHHHHHHh
Confidence 89999999999999988743
No 425
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.59 E-value=2.4e-14 Score=137.76 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||++++.+.... ..+.++..+.....+.+++ ..+.+|||||........
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR------------- 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcc-------------
Confidence 46999999999999999999987532 2232333333334445555 357899999986422111
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|....-+.... .+...++....+.|+++|+||+|+....
T Consensus 67 -------------------------~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 67 -------------------------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred -------------------------ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 1245789999999998754322221 2333344433578999999999986432
Q ss_pred hh---------------hHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 320 IM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~~---------------~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.. ....+ ...+. .++++||++|.|++++++.|.+.
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 10 01111 12233 68999999999999999998754
No 426
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=2.3e-14 Score=136.82 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
.|+++|.+|||||||++++.+... .....|.... ....+...+..+.+|||||...+.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~~~~------------------- 58 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGF--NSVAIPTQDAIMELLEIGGSQNLR------------------- 58 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCc--ceEEEeeCCeEEEEEECCCCcchh-------------------
Confidence 378999999999999999998742 2121222222 223345667889999999986421
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
..+..+++.+|+++||+|+.+..+... ..+.+++.. ..++|+++|+||+|+.......
T Consensus 59 -------------------~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-~~~~piilv~NK~Dl~~~~~~~ 118 (164)
T cd04162 59 -------------------KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-PPDLPLVVLANKQDLPAARSVQ 118 (164)
T ss_pred -------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-CCCCcEEEEEeCcCCcCCCCHH
Confidence 233466889999999999876532221 122333322 2579999999999986543211
Q ss_pred H-------HHH-HhcCCCCeeecccC------CCChHHHHHHHH
Q 005979 323 V-------SEF-WSLGFSPLPISAIS------GTGTGELLDLVC 352 (666)
Q Consensus 323 ~-------~~~-~~~~~~~i~iSa~~------g~Gi~eLl~~I~ 352 (666)
. ..+ ...++.++++||++ ++|+.++++.+.
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 1 111 12345567888887 999999998875
No 427
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.58 E-value=4.9e-14 Score=127.97 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=111.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|.++|-.|+||||++++|++.....+++..|.... .+.+ ++.++++||..|+......|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik----tl~~-~~~~L~iwDvGGq~~lr~~W------------- 77 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK----TLEY-KGYTLNIWDVGGQKTLRSYW------------- 77 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE----EEEe-cceEEEEEEcCCcchhHHHH-------------
Confidence 58999999999999999999999886556665544433 3333 78899999999986654443
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHH-HH---HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAER-IE---QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~-i~---~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..|+..+|++|+|+|.++....++.. .++. +. -.|.|+++++||.|+...-...... +.-.+.+ +......+
T Consensus 78 -~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~-~~~~L~~-l~ks~~~~ 154 (185)
T KOG0073|consen 78 -KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEIS-KALDLEE-LAKSHHWR 154 (185)
T ss_pred -HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHH-HhhCHHH-hccccCce
Confidence 34889999999999998876555533 2222 22 2489999999999996432211111 1122333 32445688
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++-|||.+|.++.+-|+++..-
T Consensus 155 l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 155 LVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred EEEEeccccccHHHHHHHHHHH
Confidence 9999999999998888887643
No 428
>PRK00098 GTPase RsgA; Reviewed
Probab=99.58 E-value=1.1e-14 Score=152.18 Aligned_cols=142 Identities=23% Similarity=0.245 Sum_probs=100.1
Q ss_pred HHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccch--hhHHH-HHhcCCCCeeecccCCCC
Q 005979 269 AIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSE-FWSLGFSPLPISAISGTG 343 (666)
Q Consensus 269 ~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~~~~-~~~~~~~~i~iSa~~g~G 343 (666)
.+.++|++++|+|+..+..... ..++..+.. .++|+++|+||+|+..... ..... +...+++++++||.+|.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3688999999999975532221 122223333 5789999999999963221 11222 235678899999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCc-------ceeeeEeEEEec
Q 005979 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (666)
Q Consensus 344 i~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-------tT~d~~~~~~~~ 416 (666)
+++|++.+. ...++++|.+|||||||+|+|++.....++..++ ||+......+.
T Consensus 155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~- 215 (298)
T PRK00098 155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP- 215 (298)
T ss_pred HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-
Confidence 999988762 1368999999999999999999877666665553 67665443332
Q ss_pred CCCceEEEEEcCCCcccc
Q 005979 417 PEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~ 434 (666)
++ ..|+||||+..+.
T Consensus 216 -~~--~~~~DtpG~~~~~ 230 (298)
T PRK00098 216 -GG--GLLIDTPGFSSFG 230 (298)
T ss_pred -CC--cEEEECCCcCccC
Confidence 22 4899999998653
No 429
>PLN03127 Elongation factor Tu; Provisional
Probab=99.58 E-value=3e-14 Score=156.38 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC------Cccc---------ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++. .... ....+|+|.+.....+..++.++.++||||+..
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~---- 136 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD---- 136 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc----
Confidence 457999999999999999999732 1111 123378999987777777788999999999853
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ 306 (666)
+ .......+..+|++++|+|+..+...++.+++.++.. .+.| +
T Consensus 137 ---f-------------------------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~i 180 (447)
T PLN03127 137 ---Y-------------------------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSL 180 (447)
T ss_pred ---h-------------------------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeE
Confidence 1 1333456677999999999999999999999999887 4788 5
Q ss_pred EEEeccCCCCccch-hhH-----HHHH-hcC-----CCCeeeccc---CCCC-------hHHHHHHHHHHhhh
Q 005979 307 ILAVNKCESPRKGI-MQV-----SEFW-SLG-----FSPLPISAI---SGTG-------TGELLDLVCSELKK 357 (666)
Q Consensus 307 ilv~NK~D~~~~~~-~~~-----~~~~-~~~-----~~~i~iSa~---~g~G-------i~eLl~~I~~~l~~ 357 (666)
|+|+||+|+..... ... ..+. ..+ ++++++||. +|.| +.+|++.|.+.++.
T Consensus 181 IvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 181 VVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 78899999975321 111 1111 112 356788776 4544 67888888877653
No 430
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.3e-14 Score=135.79 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|..|||||||+-++...+... ...+.+..-.....+.+++ .++.+|||+|.+.....-+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap------------ 72 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP------------ 72 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc------------
Confidence 579999999999999999998765221 1223333333333344444 6788999999987544322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~~ 319 (666)
.+++.|+++|+|+|+.+.-+... ..+++-|++.. .+.-+.+|+||+|+....
T Consensus 73 --------------------------MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 73 --------------------------MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred --------------------------ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 56789999999999986533322 23444444432 223356699999998743
Q ss_pred hhhH---HHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 320 IMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 320 ~~~~---~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.... ..+ ...|+.++++||++|.|+++++..|.+.++...
T Consensus 127 ~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 127 EVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 3222 223 346889999999999999999999999998654
No 431
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=155.26 Aligned_cols=165 Identities=26% Similarity=0.292 Sum_probs=117.0
Q ss_pred HHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHH--HHHhcCCCCeeecccC-
Q 005979 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAIS- 340 (666)
Q Consensus 264 ~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~--~~~~~~~~~i~iSa~~- 340 (666)
+|.++.++++|+|+.+||++.++......+.+++......+..++++||+|+........+ +|...+++++..||.-
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~a 245 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAA 245 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccc
Confidence 7899999999999999999999877667788888775555778999999999987655554 4555677888888876
Q ss_pred -----CCChHHHHHH---HHHHhh------------hhcC--Ccc--hh--------------hhhcCCceEEEecCCCC
Q 005979 341 -----GTGTGELLDL---VCSELK------------KVEG--TED--LV--------------EEENRIPAIAIVGRPNV 382 (666)
Q Consensus 341 -----g~Gi~eLl~~---I~~~l~------------~~~~--~~~--~~--------------~~~~~~~kI~vvG~~nv 382 (666)
+.++.+-+.. +..... +... .+. .+ +.......|++||.|||
T Consensus 246 t~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNV 325 (562)
T KOG1424|consen 246 TEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNV 325 (562)
T ss_pred cccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCC
Confidence 1111111110 000000 0000 000 00 00111367999999999
Q ss_pred ChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 383 GKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 383 GKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
||||+||+|.|..+..|+.+||-|+.+.+..+. ..+.|+|+||+.-
T Consensus 326 GKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLVf 371 (562)
T KOG1424|consen 326 GKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLVF 371 (562)
T ss_pred chhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCccc
Confidence 999999999999999999999999998876554 2579999999863
No 432
>PRK13351 elongation factor G; Reviewed
Probab=99.58 E-value=3e-14 Score=165.94 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=90.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc-----c------cC------CCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----V------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----~------~~------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
..++|+++|+.|+|||||+++|+...... + .+ ..+.|.......+. +++..+++|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence 35799999999999999999998532110 0 00 13455555555555 4788999999999865
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
+. ..+..+++.+|++++|+|++++...+...++..+...++|+++|+||+|+..
T Consensus 86 f~--------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FT--------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred HH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 42 3456688999999999999999998988899988888999999999999875
No 433
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.58 E-value=2.7e-14 Score=138.73 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++++.... ...+..+..+.....+.+++ ..+.+|||+|...+.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------------- 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------------- 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 35799999999999999999998753 22232222222222344454 468999999986422
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
......++.+|++|+|+|.....+... ..+...++....+.|+++|+||+|+...
T Consensus 68 -----------------------~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 124 (182)
T cd04172 68 -----------------------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124 (182)
T ss_pred -----------------------hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC
Confidence 112245788999999999987644443 2344455554457899999999998531
Q ss_pred ------------c-h--hhHHHH-HhcCC-CCeeecccCCCC-hHHHHHHHHH
Q 005979 319 ------------G-I--MQVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (666)
Q Consensus 319 ------------~-~--~~~~~~-~~~~~-~~i~iSa~~g~G-i~eLl~~I~~ 353 (666)
. . .+...+ ...+. .++++||++|.| +.+++..+.+
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 0 1 112222 24564 789999999998 9999988775
No 434
>PRK00049 elongation factor Tu; Reviewed
Probab=99.58 E-value=2.9e-14 Score=155.06 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=113.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc------c---------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++... . ......|+|.+.....+.+++..+.++||||+..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 87 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD---- 87 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH----
Confidence 35799999999999999999987310 0 1112568888877666666778899999999853
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
+...+...+..+|++++|+|+..+...++.+++.++.. .+.|++
T Consensus 88 ----------------------------------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~i 131 (396)
T PRK00049 88 ----------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYI 131 (396)
T ss_pred ----------------------------------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEE
Confidence 12344566789999999999999999999999998877 478876
Q ss_pred -EEeccCCCCccch-h-----hHHHHH-hcC-----CCCeeecccCCC----------ChHHHHHHHHHHhh
Q 005979 308 -LAVNKCESPRKGI-M-----QVSEFW-SLG-----FSPLPISAISGT----------GTGELLDLVCSELK 356 (666)
Q Consensus 308 -lv~NK~D~~~~~~-~-----~~~~~~-~~~-----~~~i~iSa~~g~----------Gi~eLl~~I~~~l~ 356 (666)
+++||+|+..... . +...+. ..+ .+++++||.+|. |+..|++.|...++
T Consensus 132 iVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5899999974221 1 111111 223 367899999875 56788888887665
No 435
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.58 E-value=4.2e-14 Score=138.56 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|..|||||||+.++..... . ..+..+..+.......+++ ..+.+|||+|...+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~--------------- 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR--------------- 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 5799999999999999999987652 1 2222222222222234455 4688999999865321
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++|+|+|..+.-+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 -----------------------l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 67 -----------------------LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred -----------------------hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 122456789999999999865443332 2333344333578999999999986431
Q ss_pred h---------------hhHHHHH-hcC-CCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 I---------------MQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~---------------~~~~~~~-~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .+...+. ..+ ..++++||++|.|+.++++.+.+.+-
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 1 0111222 245 47899999999999999999987664
No 436
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=7.2e-14 Score=140.38 Aligned_cols=154 Identities=16% Similarity=0.054 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||+|++++++... . ..+..+........+.+++ ..+.||||+|...+.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F-~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~--------------- 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD--------------- 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC-C-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH---------------
Confidence 35799999999999999999997752 2 2222222122222334444 568999999975421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
.....++..+|++++|+|.+...+... ..+...++....+.|+++|+||+|+...
T Consensus 76 -----------------------~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 76 -----------------------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred -----------------------HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 222346789999999999987654433 2344455544457899999999998531
Q ss_pred ------------c---hhhHHHHH-hcCC-CCeeecccCCC-ChHHHHHHHHHHhh
Q 005979 319 ------------G---IMQVSEFW-SLGF-SPLPISAISGT-GTGELLDLVCSELK 356 (666)
Q Consensus 319 ------------~---~~~~~~~~-~~~~-~~i~iSa~~g~-Gi~eLl~~I~~~l~ 356 (666)
. ..+...+. ..+. .++++||++|. |+++++..+...+.
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 1 11222232 3566 48899999998 89999999877654
No 437
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=3.9e-14 Score=158.35 Aligned_cols=116 Identities=21% Similarity=0.293 Sum_probs=89.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCccc-----c----------cC------CCcceeeeEeEEEecCCCceEEEEEc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SP------ISGTTRDAIDTEFTGPEGQKFRLIDT 427 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----~----------~~------~~gtT~d~~~~~~~~~~~~~~~liDT 427 (666)
.+.++|+++|++++|||||+++|+.....+ + .+ ..|++.......+. +++..+++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence 346799999999999999999987322111 0 00 11455555555565 47889999999
Q ss_pred CCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCC
Q 005979 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (666)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~ 499 (666)
||+.++ ...+.++++.+|++|+|+|++.++..+...+++.+...++|+++++||+|+.
T Consensus 88 PG~~df--------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDF--------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhH--------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 998554 2345668899999999999999988888888888888899999999999985
No 438
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.8e-14 Score=133.95 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|.|+|..|||||.|+-++.+... .......+..|.....+.++| .+++||||.|.+.+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF---------------- 71 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF---------------- 71 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHH----------------
Confidence 56899999999999999999998763 323333455666667777777 46899999999753
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHH---hh-cCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KN-YMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~---~~-~~~~p~ilv~NK~D~~ 316 (666)
+..+..+++.|+.||+|+|.+..-+.. .+.+|+. +. ..+.|.++|+||||+.
T Consensus 72 ----------------------rtit~syYR~ahGii~vyDiT~~~SF~--~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 72 ----------------------RTITSSYYRGAHGIIFVYDITKQESFN--NVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred ----------------------hhhhHhhccCCCeEEEEEEcccHHHhh--hHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 244567889999999999998643322 3334443 32 2456999999999998
Q ss_pred ccchh---hHHHH-HhcCCC-CeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 317 RKGIM---QVSEF-WSLGFS-PLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~-~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
..... +...| ..++.+ ++++||+.+.++.+.+..|...+....
T Consensus 128 ~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 128 EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 75432 22233 346777 899999999999999999887776544
No 439
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=142.74 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=120.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
...|.|+|.+|+|||||+|+|++.....++..+-.|....+....+++..+.||||||+++....+.+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~------------ 106 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE------------ 106 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH------------
Confidence 34677999999999999999998776666666655555555555677889999999999985443321
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc---
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--- 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~--- 319 (666)
..+..+..+.+.|++|+++|+.++.-..|..+++-+.....++++++|+|.+|.....
T Consensus 107 -------------------~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W 167 (296)
T COG3596 107 -------------------HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREW 167 (296)
T ss_pred -------------------HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccccc
Confidence 2345667788899999999999887777777777665555679999999999975321
Q ss_pred ----------hhhH--------HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 ----------IMQV--------SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ----------~~~~--------~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..+. ..+.+.-.+++.+|+..++|+..|...++..++.
T Consensus 168 ~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 168 DSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111 1122222367788889999999999999988873
No 440
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.57 E-value=2.4e-14 Score=156.24 Aligned_cols=144 Identities=25% Similarity=0.318 Sum_probs=105.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccc--------------------------------cCCCCcccceeEEEEeecCe
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIV--------------------------------VDEPGVTRDRMYGRSFWGEH 211 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~ 211 (666)
.+|+++||+|+|||||+++|+.....+. ....|+|.+.....+.+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3699999999999999999964321111 11236778888888888889
Q ss_pred eEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH
Q 005979 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (666)
Q Consensus 212 ~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~ 291 (666)
++.++||||+..+ ......++..+|++|+|+|+..|+.+++.
T Consensus 81 ~~~liDtPGh~~f--------------------------------------~~~~~~~~~~aD~allVVda~~G~~~qt~ 122 (406)
T TIGR02034 81 KFIVADTPGHEQY--------------------------------------TRNMATGASTADLAVLLVDARKGVLEQTR 122 (406)
T ss_pred EEEEEeCCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCCccccH
Confidence 9999999998641 12334577899999999999999998888
Q ss_pred HHHHHHHhhcCCCcEEEEeccCCCCccchh-------hHHHH-HhcCC---CCeeecccCCCChHH
Q 005979 292 EIADWLRKNYMDKFIILAVNKCESPRKGIM-------QVSEF-WSLGF---SPLPISAISGTGTGE 346 (666)
Q Consensus 292 ~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-------~~~~~-~~~~~---~~i~iSa~~g~Gi~e 346 (666)
+.+..+... ..+++++|+||+|+...... ....+ ...++ +++++||.+|.|+.+
T Consensus 123 ~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 123 RHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 887777663 23468899999998742211 11111 22344 589999999999986
No 441
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.57 E-value=1.7e-14 Score=150.03 Aligned_cols=141 Identities=22% Similarity=0.238 Sum_probs=99.8
Q ss_pred HHhccEEEEEecCCCCC-CHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchhh--HHHHHhcCCCCeeecccCCCChH
Q 005979 270 IEESCVIIFLVDGQAGL-TAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSEFWSLGFSPLPISAISGTGTG 345 (666)
Q Consensus 270 i~~ad~il~VvD~~~~~-~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~--~~~~~~~~~~~i~iSa~~g~Gi~ 345 (666)
+.++|++++|+|+..+. +.... ..+..+.. .++|+++|+||+|+....... ...+...+++++++||.+|.|++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLD 153 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHH
Confidence 57899999999998775 33321 12222333 478999999999997542211 12233467889999999999999
Q ss_pred HHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCC-------CcceeeeEeEEEecCC
Q 005979 346 ELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI-------SGTTRDAIDTEFTGPE 418 (666)
Q Consensus 346 eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~-------~gtT~d~~~~~~~~~~ 418 (666)
+|...|.. ..++++|.+|||||||+|+|++.....++.. .+||++.....+. .
T Consensus 154 ~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~ 213 (287)
T cd01854 154 ELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G 213 (287)
T ss_pred HHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C
Confidence 98877631 3689999999999999999998765544433 2477776544432 2
Q ss_pred CceEEEEEcCCCcccc
Q 005979 419 GQKFRLIDTAGIRKRA 434 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~ 434 (666)
+ ..++||||+.++.
T Consensus 214 ~--~~liDtPG~~~~~ 227 (287)
T cd01854 214 G--GLLIDTPGFREFG 227 (287)
T ss_pred C--CEEEECCCCCccC
Confidence 2 3799999997764
No 442
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.2e-14 Score=131.05 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=117.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|..+||||||+++++-.. ....-.+.+..|.....+.+.|+ .++||||+|++.+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr---------------- 85 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------------- 85 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh----------------
Confidence 689999999999999999998664 22233445667777777888775 58999999998643
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHhhcC-CCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRKNYM-DKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~~~~-~~p~ilv~NK~D~~~~ 318 (666)
-.+-.+++++.+++.|+|....- ...+.++-+..+.... +.-+++|.||.|+.+.
T Consensus 86 ----------------------slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 86 ----------------------SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred ----------------------hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 33447789999999999987653 3334445555555433 2557889999999886
Q ss_pred chhhHHH----HHhcCCCCeeecccCCCChHHHHHHHHHHhhhhcC
Q 005979 319 GIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (666)
Q Consensus 319 ~~~~~~~----~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~ 360 (666)
......+ ...++..++.+||+.|.|+..|+..|...++..+.
T Consensus 144 rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 144 RQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 5433222 23456678999999999999999999998887654
No 443
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=4.1e-14 Score=152.72 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=113.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee---------------------c---CeeEEEEecC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTG 219 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~i~liDTp 219 (666)
.+|+|||.||||||||||+|++.. +.++++|++|.++..+.... + ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 479999999999999999999987 56789999999999886542 1 2458899999
Q ss_pred CcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC------------CC
Q 005979 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------------LT 287 (666)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~------------~~ 287 (666)
|+........ -+..+++..+++||++++|+|+... ..
T Consensus 81 Gl~~ga~~g~-------------------------------glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~d 129 (396)
T PRK09602 81 GLVPGAHEGR-------------------------------GLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHD 129 (396)
T ss_pred CcCCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCC
Confidence 9975322111 1345777889999999999998621 11
Q ss_pred HH-HH-----H--------------------------------------------HHHHHHhh-----------------
Q 005979 288 AA-DE-----E--------------------------------------------IADWLRKN----------------- 300 (666)
Q Consensus 288 ~~-d~-----~--------------------------------------------i~~~l~~~----------------- 300 (666)
+. +. + +...|+..
T Consensus 130 p~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I 209 (396)
T PRK09602 130 PVEDIKFLEEELDMWIYGILEKNWEKFSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLEL 209 (396)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHH
Confidence 11 00 0 00111100
Q ss_pred -----cCCCcEEEEeccCCCCccchhhHHHHHhcCC-CCeeecccCCCChHH-HHHHHHHHhhhh
Q 005979 301 -----YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGE-LLDLVCSELKKV 358 (666)
Q Consensus 301 -----~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~-~~i~iSa~~g~Gi~e-Ll~~I~~~l~~~ 358 (666)
...+|+++|+||+|...... ....+...++ .++++||.++.++.+ |++.+.++++..
T Consensus 210 ~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 210 ARELRKISKPMVIAANKADLPPAEE-NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred HHhhhhcCCCEEEEEEchhcccchH-HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 03489999999999764221 1223333344 689999999999999 788888888753
No 444
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=9e-14 Score=139.62 Aligned_cols=143 Identities=19% Similarity=0.282 Sum_probs=104.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
....|+++|.+|+|||||+|.|++.. ...+....|+. . .+. ..+.++.++||||..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i----~-i~~-~~~~~i~~vDtPg~~----------------- 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI----T-VVT-GKKRRLTFIECPNDI----------------- 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE----E-EEe-cCCceEEEEeCCchH-----------------
Confidence 34679999999999999999998652 22233334431 1 122 367789999999842
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEE-EEEecccCCCCcchhhHHHHHHHHHHHHh--cCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQDVREKLR--ALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvI-lv~NK~Dl~~~~~~~~~~~~~~~l~~~l~--~~~~~~ 525 (666)
..+...++.+|++++|+|++.++..++..++..+...++|.+ +|+||+|+.... ...+.+.+.+++.+. ...+.+
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~--~~~~~~~~~l~~~~~~~~~~~~k 172 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKN--KTLRKTKKRLKHRFWTEVYQGAK 172 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcH--HHHHHHHHHHHHHHHHhhCCCCc
Confidence 234456788999999999999999999999999988899955 599999997532 223445556655444 456789
Q ss_pred EEEEeCccCCCH
Q 005979 526 IVYSTAIAGQSV 537 (666)
Q Consensus 526 ii~vSAk~g~gv 537 (666)
++++||++.-.+
T Consensus 173 i~~iSa~~~~~~ 184 (225)
T cd01882 173 LFYLSGIVHGRY 184 (225)
T ss_pred EEEEeeccCCCC
Confidence 999999987443
No 445
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.57 E-value=2.5e-14 Score=156.18 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc--ccccCCCCcccceeEEEEe--------------------------ecCeeEE
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSF--------------------------WGEHEFM 214 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~--~~~~~~~~~t~~~~~~~~~--------------------------~~~~~i~ 214 (666)
..+|+++|++|+|||||+++|++... .......|+|.+....... ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 34799999999999999999987421 0111122344333211110 0146799
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-CHHHHHH
Q 005979 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEI 293 (666)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-~~~d~~i 293 (666)
+|||||+..+ ...+...+..+|++++|+|+..+. ..+..+.
T Consensus 84 liDtPGh~~f--------------------------------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~ 125 (406)
T TIGR03680 84 FVDAPGHETL--------------------------------------MATMLSGAALMDGALLVIAANEPCPQPQTKEH 125 (406)
T ss_pred EEECCCHHHH--------------------------------------HHHHHHHHHHCCEEEEEEECCCCccccchHHH
Confidence 9999998641 234456678899999999999887 6666666
Q ss_pred HHHHHhhcCCCcEEEEeccCCCCccchh-----hHHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 294 ADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 294 ~~~l~~~~~~~p~ilv~NK~D~~~~~~~-----~~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+..+... ..+|+++|+||+|+...... ....+.. .+.+++++||.+|.|+++|++.|...++.
T Consensus 126 l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 126 LMALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 6666542 23579999999998753221 1111111 13468999999999999999999887663
No 446
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=6.4e-14 Score=151.19 Aligned_cols=89 Identities=30% Similarity=0.322 Sum_probs=69.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec--------------------CCC---ceEEEEEcC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PEG---QKFRLIDTA 428 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~--------------------~~~---~~~~liDTp 428 (666)
++|+++|.||||||||+|+|++.. ..++++|++|+++..+.... .++ ..+++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999999999999875 56789999999988765431 122 368899999
Q ss_pred CCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc
Q 005979 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (666)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~ 468 (666)
|+.+... .......+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga~-------~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-------EGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-------chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9865321 12234567788899999999999996
No 447
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.57 E-value=2e-14 Score=165.51 Aligned_cols=145 Identities=26% Similarity=0.325 Sum_probs=105.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccccc--------------------------------CCCCcccceeEEEEeecC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWGE 210 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~ 210 (666)
..+|+++||+|+|||||+|+|+.....++. ...|+|.+.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 357999999999999999999865433321 113566777777778888
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH
Q 005979 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (666)
Q Consensus 211 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d 290 (666)
.++.++||||+..+ .......+..+|++++|+|+..|...++
T Consensus 104 ~~~~liDtPG~~~f--------------------------------------~~~~~~~~~~aD~~llVvda~~g~~~~t 145 (632)
T PRK05506 104 RKFIVADTPGHEQY--------------------------------------TRNMVTGASTADLAIILVDARKGVLTQT 145 (632)
T ss_pred ceEEEEECCChHHH--------------------------------------HHHHHHHHHhCCEEEEEEECCCCccccC
Confidence 99999999998531 1223346789999999999999988888
Q ss_pred HHHHHHHHhhcCCCcEEEEeccCCCCccchh---hH----HHH-HhcCC---CCeeecccCCCChHH
Q 005979 291 EEIADWLRKNYMDKFIILAVNKCESPRKGIM---QV----SEF-WSLGF---SPLPISAISGTGTGE 346 (666)
Q Consensus 291 ~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~---~~----~~~-~~~~~---~~i~iSa~~g~Gi~e 346 (666)
.+...++... ..+++++|+||+|+...... .. ..+ ...++ +++++||++|.|+.+
T Consensus 146 ~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 146 RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 7777777653 23678899999998742111 11 111 23454 489999999999874
No 448
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=6.4e-14 Score=152.57 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=107.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC------Ccc---------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++. ... ......|+|.+.....+...+..+.+|||||+..+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f--- 88 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY--- 88 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH---
Confidence 457999999999999999999843 111 11223688888766666666788999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
.......+..+|++++|+|+..+...++.+++.++.. .+.|.+
T Consensus 89 -----------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~i 131 (394)
T TIGR00485 89 -----------------------------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYI 131 (394)
T ss_pred -----------------------------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEE
Confidence 1334566788999999999999999999988888876 467755
Q ss_pred -EEeccCCCCccch-hh-----HHHHH-hcC-----CCCeeecccCCC-C-------hHHHHHHHHHHh
Q 005979 308 -LAVNKCESPRKGI-MQ-----VSEFW-SLG-----FSPLPISAISGT-G-------TGELLDLVCSEL 355 (666)
Q Consensus 308 -lv~NK~D~~~~~~-~~-----~~~~~-~~~-----~~~i~iSa~~g~-G-------i~eLl~~I~~~l 355 (666)
+|+||+|+..... .+ ...+. ..+ ++++++||.+|. | +.+|++.|...+
T Consensus 132 IvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 132 VVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 6899999875321 11 11121 223 468999999885 3 345555554443
No 449
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.55 E-value=8e-14 Score=152.80 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=113.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCc--ccccCCCcceeeeEeEEE---------------ecCC-------------
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEF---------------TGPE------------- 418 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~--~~~~~~~gtT~d~~~~~~---------------~~~~------------- 418 (666)
.....|+++|+...|||||+.+|++... ....-..|.|.+.-...+ .+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3457899999999999999999997542 222233355544322211 0101
Q ss_pred ----CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-CCHHHHHHHHHHHHhCC-cEEEE
Q 005979 419 ----GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIV 492 (666)
Q Consensus 419 ----~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-~t~~d~~i~~~i~~~~~-pvIlv 492 (666)
.+.+.|+||||+.++ ...+...+..+|++++|+|+.++ ...|..+.+..+...++ ++|+|
T Consensus 112 ~~~~~~~i~~IDtPGH~~f--------------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDIL--------------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred cccccceEeeeeCCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 247899999997443 44566778899999999999986 56777676666666665 58899
Q ss_pred EecccCCCCcchhhHHHHHHHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 493 VNKWDTIPNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+||+|+.+.. ..++..+++.+.+.. ..+.|+|++||++|.|++.|++.|.+..
T Consensus 178 lNKiDlv~~~---~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 178 QNKIDLVKEA---QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred EecccccCHH---HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 9999997532 222333444444432 2468999999999999999999998543
No 450
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=7.7e-14 Score=137.42 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=100.2
Q ss_pred EcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005979 169 VGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (666)
Q Consensus 169 vG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (666)
+|.+|||||||+++++.... .....+.+..+.....+.+++ ..+.+|||+|...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~--------------------- 58 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG--------------------- 58 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhh---------------------
Confidence 69999999999999986542 111122222233223333433 678999999986532
Q ss_pred chhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchh-hHH
Q 005979 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM-QVS 324 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~ 324 (666)
.....+++.+|++++|+|...+.+.... .+...+++...+.|+++|+||+|+...... ...
T Consensus 59 -----------------~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~ 121 (200)
T smart00176 59 -----------------GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI 121 (200)
T ss_pred -----------------hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH
Confidence 2223567889999999999876444332 344445444457899999999998543211 111
Q ss_pred HH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 325 EF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 325 ~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.+ ...++.++++||++|.|+.+++.+|.+.+.+
T Consensus 122 ~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 122 TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22 2356689999999999999999999877653
No 451
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.55 E-value=3.7e-14 Score=141.22 Aligned_cols=168 Identities=17% Similarity=0.246 Sum_probs=117.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccccc-CCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
+|+++|.+|+||||++|.|+|...+... ....+|..+......++|+.+.||||||+.+......++++++..|+.++.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999865544 345789999999889999999999999998866666666777777776666
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc---CCCcEEEEeccCCCCccch
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~---~~~p~ilv~NK~D~~~~~~ 320 (666)
||+ +++|||+... .++..+...++.+...+ ..+.+++|++.+|......
T Consensus 82 ~g~---------------------------ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 82 PGP---------------------------HAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp T-E---------------------------SEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred CCC---------------------------eEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 665 6899999988 88999999988887743 2357899999998665321
Q ss_pred h-h---------HHHH-HhcCCCCeeeccc------CCCChHHHHHHHHHHhhhhcC
Q 005979 321 M-Q---------VSEF-WSLGFSPLPISAI------SGTGTGELLDLVCSELKKVEG 360 (666)
Q Consensus 321 ~-~---------~~~~-~~~~~~~i~iSa~------~g~Gi~eLl~~I~~~l~~~~~ 360 (666)
. . ...+ ...+-.++.+... ....+.+|++.|.+.+.+...
T Consensus 134 ~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 134 LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 1 0 0111 1234344444444 345788899998888877653
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=4.7e-14 Score=128.86 Aligned_cols=140 Identities=21% Similarity=0.212 Sum_probs=92.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH-HHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL-SVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~-~~~~ 450 (666)
.||+++|++++|||||+++|.+.... . .-|.. +.+ .+ .+|||||=. +|.- ....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~----~KTq~-----i~~-~~---~~IDTPGEy-----------iE~~~~y~a 56 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-Y----KKTQA-----IEY-YD---NTIDTPGEY-----------IENPRFYHA 56 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-c----Cccce-----eEe-cc---cEEECChhh-----------eeCHHHHHH
Confidence 48999999999999999999976521 1 11222 112 11 459999932 1211 1222
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
.......||++++|.|++++.+.---.+. .-.++|+|-|+||+|+..... . .+..++.|...+.-.+|++|
T Consensus 57 Li~ta~dad~V~ll~dat~~~~~~pP~fa---~~f~~pvIGVITK~Dl~~~~~--~----i~~a~~~L~~aG~~~if~vS 127 (143)
T PF10662_consen 57 LIVTAQDADVVLLLQDATEPRSVFPPGFA---SMFNKPVIGVITKIDLPSDDA--N----IERAKKWLKNAGVKEIFEVS 127 (143)
T ss_pred HHHHHhhCCEEEEEecCCCCCccCCchhh---cccCCCEEEEEECccCccchh--h----HHHHHHHHHHcCCCCeEEEE
Confidence 33445689999999999986432221122 234699999999999973211 1 22334555555666789999
Q ss_pred CccCCCHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAE 545 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~ 545 (666)
|.+|+|+++|.+.|.
T Consensus 128 ~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 128 AVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998875
No 453
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3e-14 Score=151.50 Aligned_cols=161 Identities=21% Similarity=0.268 Sum_probs=123.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCc--------------ccccCCCCcccceeEEEEeecC---eeEEEEecCCccc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR--------------AIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLN 223 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~ 223 (666)
.+...++||-|.+-|||||.++|+.... -.+....|+|...+...+.|.+ ..+.+|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3455789999999999999999864322 1244566899999988888877 7899999999998
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
++.. ..+.+.-|+.+|+|||+.+|...++..-+...-+ .+
T Consensus 138 Fs~E--------------------------------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~ 177 (650)
T KOG0462|consen 138 FSGE--------------------------------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AG 177 (650)
T ss_pred ccce--------------------------------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cC
Confidence 6542 2366788999999999999998887543333222 47
Q ss_pred CcEEEEeccCCCCccchhhHHH----HHhc-CCCCeeecccCCCChHHHHHHHHHHhhhhcCC
Q 005979 304 KFIILAVNKCESPRKGIMQVSE----FWSL-GFSPLPISAISGTGTGELLDLVCSELKKVEGT 361 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~~~~----~~~~-~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~ 361 (666)
..+|.|+||+|+...+...... .+.. +-+++.+||++|.|+.+|++.|++.+|.....
T Consensus 178 L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 178 LAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 8899999999998765433322 2222 22689999999999999999999999876543
No 454
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.4e-13 Score=131.40 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=116.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...+|+++|.+|||||+++-++.... +..........|.....+.++|. .+++|||.|.+.+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~-f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf--------------- 74 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDS-FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF--------------- 74 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhcc-CcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhH---------------
Confidence 35689999999999999999998765 22233334555666666777774 5799999999752
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~ 317 (666)
...+..+++.|+.+++|+|....-+.+. ..+++.+.+.. .+.|.++|.||+|+..
T Consensus 75 -----------------------~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 75 -----------------------RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred -----------------------HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 3556788899999999999986544332 23556666543 3788999999999876
Q ss_pred cchhhH----HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~~~----~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+..... .-...+|+.++++||++|.|+.+.+-.+.+.+..
T Consensus 132 ~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 132 KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 432211 1123568999999999999999999888877664
No 455
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=5.5e-14 Score=153.40 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCC--cccccCCCCcccceeEEEEeec--------------------------CeeEE
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFWG--------------------------EHEFM 214 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~--~~~~~~~~~~t~~~~~~~~~~~--------------------------~~~i~ 214 (666)
..+|+++|+.++|||||+.+|++.. ........|.|.+.......+. ...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 3589999999999999999997641 1111223456655433221110 25799
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-CHHHHHH
Q 005979 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEI 293 (666)
Q Consensus 215 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-~~~d~~i 293 (666)
+|||||+.. +...+...+..+|++++|+|+.++. ..++.+.
T Consensus 89 liDtPG~~~--------------------------------------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~ 130 (411)
T PRK04000 89 FVDAPGHET--------------------------------------LMATMLSGAALMDGAILVIAANEPCPQPQTKEH 130 (411)
T ss_pred EEECCCHHH--------------------------------------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH
Confidence 999999754 1234556677899999999999887 6776667
Q ss_pred HHHHHhhcCCCcEEEEeccCCCCccchh-----hHHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 294 ADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 294 ~~~l~~~~~~~p~ilv~NK~D~~~~~~~-----~~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+.++... ..+|+++|+||+|+...... ....+.. .+.+++++||++|.|+++|++.|...++.
T Consensus 131 l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 131 LMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 7766552 23578999999998764321 1111221 13468999999999999999999887764
No 456
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=129.02 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=118.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccc------cCCCc---ceeeeEeEEEecCCCceEEEEEcCCCccccccccCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV------SPISG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGS 441 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~------~~~~g---tT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 441 (666)
..||++.|.-++||||++.++.......+ ...-+ ||...-...+.+.++..+.|+|||||.||.-++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~---- 85 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW---- 85 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH----
Confidence 46999999999999999999985542221 11123 666666667776566899999999998875443
Q ss_pred hhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhC-CcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc
Q 005979 442 TTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (666)
Q Consensus 442 ~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~-~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~ 520 (666)
.-+.+++..+++++|.+.+.+.....+++.+.... .|++|+.||.||.+....+ .+++.+..
T Consensus 86 ----------~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe-------~i~e~l~~ 148 (187)
T COG2229 86 ----------EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPE-------KIREALKL 148 (187)
T ss_pred ----------HHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHH-------HHHHHHHh
Confidence 12568899999999999999887888888888776 9999999999997754432 33444444
Q ss_pred C-CCCCEEEEeCccCCCHHHHHHHHH
Q 005979 521 L-DWAPIVYSTAIAGQSVDKIIVAAE 545 (666)
Q Consensus 521 ~-~~~~ii~vSAk~g~gv~~L~~~i~ 545 (666)
. ...|+|.++|..++++.+.+..+.
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHH
Confidence 3 478999999999999988777665
No 457
>PLN03126 Elongation factor Tu; Provisional
Probab=99.55 E-value=7.2e-14 Score=154.23 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=103.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc---------------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++||+|+|||||+++|++.... ......|+|.+.....+.+++..+.+|||||+.++
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f--- 157 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 157 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH---
Confidence 457999999999999999999853211 11334577887777667778899999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ 306 (666)
......++..+|++++|+|+..|...++.+++..+.. .++| +
T Consensus 158 -----------------------------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~i 200 (478)
T PLN03126 158 -----------------------------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNM 200 (478)
T ss_pred -----------------------------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeE
Confidence 1344577789999999999999999999998888876 4777 7
Q ss_pred EEEeccCCCCccch-h-----hHHHHH-hcC-----CCCeeecccCCC
Q 005979 307 ILAVNKCESPRKGI-M-----QVSEFW-SLG-----FSPLPISAISGT 342 (666)
Q Consensus 307 ilv~NK~D~~~~~~-~-----~~~~~~-~~~-----~~~i~iSa~~g~ 342 (666)
++++||+|+..... . +...+. ..| ++++++||.+|.
T Consensus 201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 201 VVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 78999999875321 1 111121 223 367899999884
No 458
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.55 E-value=3.2e-14 Score=157.68 Aligned_cols=147 Identities=24% Similarity=0.276 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCccccc--------------------------------CCCCcccceeEEEEeec
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWG 209 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 209 (666)
...+|+++||+|+|||||+++|+.....+.. ...|+|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 3578999999999999999999755322211 11356677777777788
Q ss_pred CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH
Q 005979 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (666)
Q Consensus 210 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~ 289 (666)
+.++.+|||||+..+ .......+..+|++++|+|+..|+..+
T Consensus 106 ~~~i~~iDTPGh~~f--------------------------------------~~~~~~~l~~aD~allVVDa~~G~~~q 147 (474)
T PRK05124 106 KRKFIIADTPGHEQY--------------------------------------TRNMATGASTCDLAILLIDARKGVLDQ 147 (474)
T ss_pred CcEEEEEECCCcHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCcccc
Confidence 889999999997531 123345578999999999999998887
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccCCCCccchh---hH----HHHH-hcC----CCCeeecccCCCChHHH
Q 005979 290 DEEIADWLRKNYMDKFIILAVNKCESPRKGIM---QV----SEFW-SLG----FSPLPISAISGTGTGEL 347 (666)
Q Consensus 290 d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~---~~----~~~~-~~~----~~~i~iSa~~g~Gi~eL 347 (666)
+.+....+.... .+|+++|+||+|+...... .. ..+. ..+ .+++++||++|.|+.++
T Consensus 148 t~~~~~l~~~lg-~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 148 TRRHSFIATLLG-IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred chHHHHHHHHhC-CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 777666665532 3578999999998742211 11 1111 223 36899999999999764
No 459
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.54 E-value=5.7e-14 Score=146.79 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=118.1
Q ss_pred hcCCceEEEecCCCCChhHHHHHHhcc----Ccc-----------cccCCCc---ceeeeEe---EEEecCCC----ceE
Q 005979 368 ENRIPAIAIVGRPNVGKSSILNALVGE----DRT-----------IVSPISG---TTRDAID---TEFTGPEG----QKF 422 (666)
Q Consensus 368 ~~~~~kI~vvG~~nvGKSSLin~ll~~----~~~-----------~~~~~~g---tT~d~~~---~~~~~~~~----~~~ 422 (666)
.+..+.|+++|+.|+|||||+|+|.+. +.. .+++.+| +|.++.. ..++.... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345689999999999999999999988 555 6888899 9999987 33333223 589
Q ss_pred EEEEcCCCccccccccCCc---------------hhhHHHHHHHHHHHh-hCCeEEEEe-ecc------ccCCHHHHHHH
Q 005979 423 RLIDTAGIRKRAAIASSGS---------------TTEALSVNRAFRAIR-RSDVVALVI-EAM------ACITEQDCRIA 479 (666)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~---------------~~e~~~~~~~~~~i~-~advvllVi-Da~------~~~t~~d~~i~ 479 (666)
.|+||+|+.+.+.+..... ..+...---+.+.+. .+|+.|+|. |++ +.....+.+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999999987644321100 001111122777888 999999999 886 45678888999
Q ss_pred HHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 480 ~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+.+.++|+|+|+||.|-..+... .+.+.+....++|++++|+.. ..-+++..-+.+++
T Consensus 174 ~eLk~~~kPfiivlN~~dp~~~et~--------~l~~~l~eky~vpvl~v~c~~-l~~~DI~~il~~vL 233 (492)
T TIGR02836 174 EELKELNKPFIILLNSTHPYHPETE--------ALRQELEEKYDVPVLAMDVES-MRESDILSVLEEVL 233 (492)
T ss_pred HHHHhcCCCEEEEEECcCCCCchhH--------HHHHHHHHHhCCceEEEEHHH-cCHHHHHHHHHHHH
Confidence 9999999999999999994332221 112223333358899998765 23344444444443
No 460
>PRK12739 elongation factor G; Reviewed
Probab=99.54 E-value=1.1e-13 Score=160.83 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc-----ccc------------CCCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----IVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~-----~~~------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+||+|+|||||+|+|+..... .+. ...|+|.+.....+.|++.++.+|||||+.++
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 457999999999999999999753211 122 25688999988899999999999999998541
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
...+.+++..+|++++|+|+..+...++..+++++.+ .++|
T Consensus 87 -------------------------------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p 127 (691)
T PRK12739 87 -------------------------------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVP 127 (691)
T ss_pred -------------------------------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCC
Confidence 1246688899999999999999999999999998877 5789
Q ss_pred EEEEeccCCCCcc
Q 005979 306 IILAVNKCESPRK 318 (666)
Q Consensus 306 ~ilv~NK~D~~~~ 318 (666)
+++++||+|+...
T Consensus 128 ~iv~iNK~D~~~~ 140 (691)
T PRK12739 128 RIVFVNKMDRIGA 140 (691)
T ss_pred EEEEEECCCCCCC
Confidence 9999999998753
No 461
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.53 E-value=1.1e-13 Score=152.38 Aligned_cols=145 Identities=25% Similarity=0.223 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc------------------------------ccCCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++||+|+|||||+++|+.....+ .....|+|.+.....+.+++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 4579999999999999999998421111 1124588888888888888899
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC---CCHH
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAA 289 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~---~~~~ 289 (666)
+.+|||||+..+ ...+...+..+|++++|+|+..+ ...+
T Consensus 87 i~iiDtpGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~ 128 (426)
T TIGR00483 87 VTIVDCPGHRDF--------------------------------------IKNMITGASQADAAVLVVAVGDGEFEVQPQ 128 (426)
T ss_pred EEEEECCCHHHH--------------------------------------HHHHHhhhhhCCEEEEEEECCCCCcccCCc
Confidence 999999997531 12334567889999999999987 4444
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccCCCCccchh-------hHHHHH-hcC-----CCCeeecccCCCChHH
Q 005979 290 DEEIADWLRKNYMDKFIILAVNKCESPRKGIM-------QVSEFW-SLG-----FSPLPISAISGTGTGE 346 (666)
Q Consensus 290 d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-------~~~~~~-~~~-----~~~i~iSa~~g~Gi~e 346 (666)
..+...+++.. ...|+++|+||+|+...... +...+. ..+ .+++++||++|.|+.+
T Consensus 129 t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 129 TREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 44444444432 23578999999998642111 111222 233 3579999999999986
No 462
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1e-13 Score=145.14 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=119.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc--------------ccccCCCcceeeeEeEEEecC--CC--ceEEEEEcCCCc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR--------------TIVSPISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIR 431 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~--------------~~~~~~~gtT~d~~~~~~~~~--~~--~~~~liDTpG~~ 431 (666)
+.++.+++.+-..|||||..+|+.... +......|+|.......+.+. +| ..++||||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 346789999999999999999984321 113344589988877766653 23 378999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHH
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~ 511 (666)
+|.-- ..+.+..|.++|||+||++|+..|.+.-+-...+.+.-+|-|+||+||...+.. .+.
T Consensus 88 DFsYE--------------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpe----rvk 149 (603)
T COG0481 88 DFSYE--------------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPE----RVK 149 (603)
T ss_pred ceEEE--------------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHH----HHH
Confidence 98532 234677899999999999999999988777777889999999999999764332 233
Q ss_pred HHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 512 ~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++.+.+. +.-...+.+|||+|.||++++++|.+.
T Consensus 150 ~eIe~~iG-id~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 150 QEIEDIIG-IDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHhC-CCcchheeEecccCCCHHHHHHHHHhh
Confidence 44443332 222458899999999999999988744
No 463
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=7.9e-14 Score=146.88 Aligned_cols=196 Identities=18% Similarity=0.248 Sum_probs=135.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
...+.++++|.|||||||++|.+...+ ..+.+++.||.....+.+.+ .-.+++++||||+.+...-.. ..+| +..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdr--N~IE-mqs 240 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDR--NIIE-MQI 240 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhh--hHHH-HHH
Confidence 345789999999999999999988554 67899999999877666654 566899999999987532111 1222 223
Q ss_pred HHHHHHHhhCCeEEEEeeccc--cCC-HHHHHHHHHHHH--hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMA--CIT-EQDCRIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~--~~t-~~d~~i~~~i~~--~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
--++.+++.| |||+.|.+. |.+ .+..+++..|.. .++|+|+|+||+|+......... .+++-+.+...++
T Consensus 241 ITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~---~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 241 ITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQK---NQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHH---HHHHHHHHHhccC
Confidence 3445566655 899999875 444 455667777776 48999999999999876554322 2345556666777
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH-HHh-cccCCCchhHH-HHHHHHHHccCCC
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV-DKE-RSRRLSTATIN-QVVQEAVAFKSPP 574 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~-~~~-~~~~i~t~~ln-~~l~~~~~~~~~p 574 (666)
++++.+|..+..||..+-....+. +.+ ...++.+...+ ..+.......|.|
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~ 369 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAA 369 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Confidence 999999999999999877655443 222 23444443333 5555544444443
No 464
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=1.1e-13 Score=126.54 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|.+|+|||||+++|.+... ....|....+ .+ ..|||||-+-.. +
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~-----~~---~~IDTPGEyiE~---~-------------- 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY-----YD---NTIDTPGEYIEN---P-------------- 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe-----cc---cEEECChhheeC---H--------------
Confidence 3799999999999999999999752 1223443322 22 249999965311 1
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCC--ccchh
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP--RKGIM 321 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~--~~~~~ 321 (666)
.+.........+||+|++|.|+..+.......+...+ .+|+|=|+||+|+. ..+..
T Consensus 52 -----------------~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 52 -----------------RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred -----------------HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHH
Confidence 1234555667899999999999876544333444433 68999999999998 33333
Q ss_pred hHHHH-HhcCC-CCeeecccCCCChHHHHHHHH
Q 005979 322 QVSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 322 ~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
....+ ...|. .++.+|+.+|+|+++|.+.|.
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 33333 34566 689999999999999998874
No 465
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.52 E-value=2.6e-13 Score=140.16 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=102.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccC--------CCcc-eeeeEeEEEecCCCc--eEEEEEcCCCccccccccC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP--------ISGT-TRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASS 439 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~--------~~gt-T~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~ 439 (666)
.++|+++|.+|+|||||+|+|++........ ...| ........+.. +|. ++.+|||||+.++......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhh
Confidence 3689999999999999999999876544322 2233 33444444443 453 6999999999876432222
Q ss_pred CchhhHHHHHHHHHHH-------h-------hCCeEEEEeeccc-cCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcch
Q 005979 440 GSTTEALSVNRAFRAI-------R-------RSDVVALVIEAMA-CITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ 504 (666)
Q Consensus 440 ~~~~e~~~~~~~~~~i-------~-------~advvllViDa~~-~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~ 504 (666)
...+..+...+...++ + .+|++|++++.+. +++..|..+++++.+ ++|+|+|+||+|+.....
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e- 160 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEE- 160 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHH-
Confidence 2222322222222211 2 4889999999874 788899999999986 899999999999975322
Q ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 505 QTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 505 ~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
.....+.+.+.+... +++++....
T Consensus 161 --~~~~k~~i~~~l~~~-~i~~~~~~~ 184 (276)
T cd01850 161 --LKEFKQRIMEDIEEH-NIKIYKFPE 184 (276)
T ss_pred --HHHHHHHHHHHHHHc-CCceECCCC
Confidence 223455566666554 467776654
No 466
>PTZ00258 GTP-binding protein; Provisional
Probab=99.52 E-value=3.1e-13 Score=144.26 Aligned_cols=91 Identities=29% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC----------------ceEEEEEcCCCccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKR 433 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~~~liDTpG~~~~ 433 (666)
...+|+++|.||||||||+|+|++.. ..++++|+||+++..+.+...+. .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35799999999999999999998775 68999999999999888765332 25899999999753
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~ 468 (666)
.. .......+++..++.+|++++|+|+.
T Consensus 99 a~-------~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 AS-------EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Cc-------chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22 12344567888999999999999984
No 467
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.52 E-value=3.2e-13 Score=138.83 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=85.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccc---------------cCC------CCcccceeEEEEeecCeeEEEEecCCcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDE------PGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~---------------~~~------~~~t~~~~~~~~~~~~~~i~liDTpG~~ 222 (666)
..|+|+||+|+|||||+++|+.....+. .++ .+.+.......+.|.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4699999999999999999985422211 111 1223333344678889999999999986
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC
Q 005979 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (666)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~ 302 (666)
++. ..+..+++.+|++++|+|+..++..+...+++++.. .
T Consensus 83 df~--------------------------------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~ 122 (267)
T cd04169 83 DFS--------------------------------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--R 122 (267)
T ss_pred HHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--c
Confidence 421 234567789999999999998888777777777665 4
Q ss_pred CCcEEEEeccCCCCccc
Q 005979 303 DKFIILAVNKCESPRKG 319 (666)
Q Consensus 303 ~~p~ilv~NK~D~~~~~ 319 (666)
++|+++++||+|+....
T Consensus 123 ~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 123 GIPIITFINKLDREGRD 139 (267)
T ss_pred CCCEEEEEECCccCCCC
Confidence 78999999999986543
No 468
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=145.09 Aligned_cols=165 Identities=21% Similarity=0.332 Sum_probs=126.1
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 160 ~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
....+++++||+|||||||++|.++... ..+.+++++|+....|.+.+.-..++++||||+.+....+..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN--------- 234 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN--------- 234 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh---------
Confidence 4456799999999999999999999887 678999999999999999998899999999999874332222
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHh-ccEEEEEecCC--CCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQ--AGLTAAD-EEIADWLRKNYMDKFIILAVNKCES 315 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~-ad~il~VvD~~--~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~ 315 (666)
.|+.++..++.+ -.+|||++|.+ .|.+..+ ..++..++..+.++|+|+|+||+|.
T Consensus 235 ---------------------~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 235 ---------------------IIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred ---------------------HHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 245566555544 45688999975 4677555 4788889988999999999999997
Q ss_pred Cccchhh------HHHHHhcC-CCCeeecccCCCChHHHHHHHHHHh
Q 005979 316 PRKGIMQ------VSEFWSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 316 ~~~~~~~------~~~~~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
...+... ......-| ++++.+|+.+.+|+-++....++.+
T Consensus 294 m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred cCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 6533211 11222333 6789999999999988876665544
No 469
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.51 E-value=2.9e-13 Score=132.12 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=99.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|+|||||+++|...... .....+..+.......+++ ..+.+|||||........
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------------- 66 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR-------------- 66 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc--------------
Confidence 6999999999999999999855422 1222222222233444555 457899999986432111
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG- 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~- 319 (666)
...+..+|++++++|....-+.... .+...++....+.|+++|+||+|+....
T Consensus 67 ------------------------~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 67 ------------------------PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred ------------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 0235788999999998654333222 3445554444579999999999985311
Q ss_pred ---------h---hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 ---------I---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ---------~---~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+. .++++||++|.|++++++.+.+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 123 AKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 0 111111 23454 68999999999999999999876653
No 470
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=136.12 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=103.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.||+++|.+|||||||+++|.+... .....++++............ ...+.+|||+|+.++.. .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~--------------~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS--------------L 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH--------------H
Confidence 7999999999999999999997653 222333333333332322211 34689999999865432 2
Q ss_pred HHHHHhhCCeEEEEeeccccCC--HHHHHHHHHHHHh---CCcEEEEEecccCCCCcchhhH--------HHHHHHHHHH
Q 005979 451 AFRAIRRSDVVALVIEAMACIT--EQDCRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTA--------TYYEQDVREK 517 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t--~~d~~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~--------~~~~~~l~~~ 517 (666)
...++++++++++|+|.+.... .-...|...+... ..|+++|+||+|+......... ..+.......
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 3347899999999999986322 2233466666664 4899999999999765321110 0001101111
Q ss_pred -HhcCCCCCEEEEeCc--cCCCHHHHHHHHHHHHH
Q 005979 518 -LRALDWAPIVYSTAI--AGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 518 -l~~~~~~~ii~vSAk--~g~gv~~L~~~i~~~~~ 549 (666)
........++.+||+ ++.|+.++|..+.....
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 111112338999999 99999999998876543
No 471
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=9.4e-13 Score=133.64 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=94.6
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
+..++|+++|.+|||||||+|+|+|...+.++...++|+........ .+|..+.+|||||+.+...- ........
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~----~~~~~~~~ 103 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMD----QRVNRKIL 103 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhh----HHHHHHHH
Confidence 45689999999999999999999999888888887788877666555 47889999999999764210 01112222
Q ss_pred HHHHHHHh--hCCeEEEEeeccc-cCCHHHHHHHHHHHH-hC----CcEEEEEecccCCCCc
Q 005979 449 NRAFRAIR--RSDVVALVIEAMA-CITEQDCRIAERIEQ-EG----KGCLIVVNKWDTIPNK 502 (666)
Q Consensus 449 ~~~~~~i~--~advvllViDa~~-~~t~~d~~i~~~i~~-~~----~pvIlv~NK~Dl~~~~ 502 (666)
....+++. ..|++++|..+.. +.+..+..+++.+.+ .+ .++++|+||+|...+.
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 33334443 5789999875543 567788888888876 34 5799999999987543
No 472
>PLN00023 GTP-binding protein; Provisional
Probab=99.51 E-value=9.2e-14 Score=143.56 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=83.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC--------------CCceEEEEEcCCCccccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--------------EGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~--------------~~~~~~liDTpG~~~~~~ 435 (666)
..+||+++|..|||||||+++|++.. +.....+++..+.....+.+. ....+.||||+|+.++..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~-F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS-SIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC-cccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 35799999999999999999999654 333333433333332333321 123689999999876643
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---------------CCcEEEEEecccCC
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---------------GKGCLIVVNKWDTI 499 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---------------~~pvIlv~NK~Dl~ 499 (666)
++ ..+++.+|++|+|+|+++..+.+++. |++.+... ++|+|||+||+||.
T Consensus 99 L~--------------~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 99 CR--------------SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hh--------------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 32 23689999999999999877776654 66767653 37899999999996
Q ss_pred CC
Q 005979 500 PN 501 (666)
Q Consensus 500 ~~ 501 (666)
..
T Consensus 165 ~~ 166 (334)
T PLN00023 165 PK 166 (334)
T ss_pred cc
Confidence 53
No 473
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.51 E-value=3.5e-13 Score=127.90 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=96.9
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||+.+++...... ..+.+ .......+.+++ ..+.+|||+|... .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----A------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----h-------------
Confidence 68999999999999999987654221 22222 222233456666 4588999999853 0
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCcc-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK- 318 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~~- 318 (666)
..++.+|++++|+|..+.-+.+. ..++..+.... .+.|+++|+||+|+...
T Consensus 61 -------------------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 61 -------------------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred -------------------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 23467999999999987655444 23444444332 45799999999997421
Q ss_pred -chh---hHHHHH-hc-CCCCeeecccCCCChHHHHHHHHHH
Q 005979 319 -GIM---QVSEFW-SL-GFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 319 -~~~---~~~~~~-~~-~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
... ....+. .. +..++++||++|.|+++++..+.+.
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 111 112232 22 3688999999999999999988753
No 474
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=2.4e-13 Score=145.10 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe-----------------eEEEEecCCcccc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNV 224 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~ 224 (666)
...+|+|||.||||||||||+|++.+ +.++++|++|++++.+.+.+.+. ++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34589999999999999999999987 78999999999999998877532 4899999999753
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCC
Q 005979 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~ 283 (666)
..... -+..+++..++++|++++|+|+.
T Consensus 99 a~~g~-------------------------------gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGE-------------------------------GLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccchh-------------------------------HHHHHHHHHHHHCCEEEEEEeCC
Confidence 22111 13467788899999999999974
No 475
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=2.4e-13 Score=158.16 Aligned_cols=109 Identities=27% Similarity=0.295 Sum_probs=86.5
Q ss_pred ecCCCCChhHHHHHHhccCccccc-----------------CCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccC
Q 005979 377 VGRPNVGKSSILNALVGEDRTIVS-----------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASS 439 (666)
Q Consensus 377 vG~~nvGKSSLin~ll~~~~~~~~-----------------~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~ 439 (666)
+|++|+|||||+++|+.....+.. ...|+|.......+.+ ++..+++|||||+.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999754322111 1246677666666664 7889999999998543
Q ss_pred CchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 440 ~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
...+..+++.+|++++|+|++.+.+.+...++..+...++|+++|+||+|+..
T Consensus 74 --------~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 74 --------TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred --------HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 23455678999999999999999999998888888888999999999999864
No 476
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=9.3e-14 Score=161.31 Aligned_cols=139 Identities=22% Similarity=0.286 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhc---CCcc--ccc------------CCCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVG---GNRA--IVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~---~~~~--~~~------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+||+|+|||||+|+|+. .... .+. ...|+|.+.....+.|.+..+.++||||+.++
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f- 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF- 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence 45899999999999999999973 2111 122 35688999888889999999999999998641
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
...+.+++..+|++++|+|+..|+..++..++.++.+ .++|
T Consensus 89 -------------------------------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p 129 (693)
T PRK00007 89 -------------------------------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVP 129 (693)
T ss_pred -------------------------------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCC
Confidence 1235678899999999999999999999999999887 5789
Q ss_pred EEEEeccCCCCccchhhHHHHH--hcCC----CCeeecccCC
Q 005979 306 IILAVNKCESPRKGIMQVSEFW--SLGF----SPLPISAISG 341 (666)
Q Consensus 306 ~ilv~NK~D~~~~~~~~~~~~~--~~~~----~~i~iSa~~g 341 (666)
+++++||+|+............ .+++ ..+|+|+..+
T Consensus 130 ~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 130 RIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 9999999999865432222211 2232 3467787766
No 477
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=2.7e-13 Score=133.12 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=95.2
Q ss_pred CeEEEEcCCCCchhHHHH-HHhcCCcc---cccCCCCccc--ceeE-E-------EEeecC--eeEEEEecCCcccccCC
Q 005979 164 PRVAIVGRPNVGKSALFN-RLVGGNRA---IVVDEPGVTR--DRMY-G-------RSFWGE--HEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n-~l~~~~~~---~~~~~~~~t~--~~~~-~-------~~~~~~--~~i~liDTpG~~~~~~~ 227 (666)
.+|+++|.+|||||||+. ++.+.... ....+..+.. +... . ...++| ..+.+|||+|.... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 479999999999999996 55543210 1112222211 1111 0 012344 56899999998531 0
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCc
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKF 305 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p 305 (666)
. ...++.+|++++|+|..+..+.... .+...++....+.|
T Consensus 81 ~--------------------------------------~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p 122 (195)
T cd01873 81 R--------------------------------------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122 (195)
T ss_pred h--------------------------------------cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC
Confidence 0 1246789999999999876554433 24455554445789
Q ss_pred EEEEeccCCCCcc-------------------ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHH
Q 005979 306 IILAVNKCESPRK-------------------GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCS 353 (666)
Q Consensus 306 ~ilv~NK~D~~~~-------------------~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~ 353 (666)
+++|+||+|+... .. .+...+ ...|..++++||++|.|++++++.+.+
T Consensus 123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 9999999998531 11 111222 235678899999999999999998875
No 478
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.50 E-value=2.6e-13 Score=133.65 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccc-ccCCCC---cccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPG---VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
.+|+++|.+|+|||||+|+|+|..... .....+ +|........ -....+.+|||||+.........+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~-------- 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDY-------- 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHH--------
Confidence 479999999999999999999864221 111111 2333322111 113578999999997532221111
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
+. ...+..+|++++|.+. +++..+..+++.+++ .++|+++|+||+|+....
T Consensus 73 ----------------------l~---~~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 73 ----------------------LE---EMKFSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSN 123 (197)
T ss_pred ----------------------HH---HhCccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhh
Confidence 11 1124678999998654 478888889998887 478999999999984311
Q ss_pred ----------hhhHH--------HHH-hcC--C-CCeeeccc--CCCChHHHHHHHHHHhhhhc
Q 005979 320 ----------IMQVS--------EFW-SLG--F-SPLPISAI--SGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 320 ----------~~~~~--------~~~-~~~--~-~~i~iSa~--~g~Gi~eLl~~I~~~l~~~~ 359 (666)
..+.. ... ..+ . .++.+|+. .++|+..|.+.|...|++..
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 11111 011 112 2 57889998 68999999999999888643
No 479
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.50 E-value=2.1e-13 Score=125.95 Aligned_cols=146 Identities=22% Similarity=0.214 Sum_probs=95.7
Q ss_pred EEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCC
Q 005979 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (666)
Q Consensus 168 ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G 245 (666)
++|++|+|||||+|+|++..... .....+..+........ .+..+.+|||||.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------------------- 59 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------------------- 59 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHH--------------------
Confidence 57999999999999999876321 11222222222222222 25779999999986521
Q ss_pred CchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHH---HHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA---DWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~---~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
......+..+|++++|+|+..+....+.... ........++|+++|+||+|+.......
T Consensus 60 ------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 60 ------------------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred ------------------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 1123556889999999999876544443322 1122233689999999999987643222
Q ss_pred HH----HH-HhcCCCCeeecccCCCChHHHHHHHH
Q 005979 323 VS----EF-WSLGFSPLPISAISGTGTGELLDLVC 352 (666)
Q Consensus 323 ~~----~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~ 352 (666)
.. .. .....+++++|+.++.|+.+++++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 21 11 22345789999999999999999875
No 480
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.50 E-value=1.5e-12 Score=140.02 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=89.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCC----cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS----GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~----gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
.+++-++|..|+|||.+++.++|+.... ++.. ..+...+... ...+.+.|-|.+-. ....+. +
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~k~LiL~ei~~~-~~~~l~------~-- 491 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQKYLILREIGED-DQDFLT------S-- 491 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec---cccceEEEeecCcc-cccccc------C--
Confidence 4678899999999999999999865433 2222 2222222211 12234555555433 111110 0
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHH--HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE--QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~--~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
. . ..||+++++||.+++.+..-+..+.... ....||++|+.|+|+-+..+..... . .+.+.+.+-.
T Consensus 492 -----k-e-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iq--p---de~~~~~~i~ 559 (625)
T KOG1707|consen 492 -----K-E-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQ--P---DEFCRQLGLP 559 (625)
T ss_pred -----c-c-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCC--h---HHHHHhcCCC
Confidence 0 1 5799999999999776555544332221 2579999999999995432111000 1 2222333334
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+.+.+|.++ .+=.++|..|.......
T Consensus 560 ~P~~~S~~~-~~s~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 560 PPIHISSKT-LSSNELFIKLATMAQYP 585 (625)
T ss_pred CCeeeccCC-CCCchHHHHHHHhhhCC
Confidence 456677664 22278999998776543
No 481
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.50 E-value=3.6e-13 Score=134.34 Aligned_cols=112 Identities=24% Similarity=0.296 Sum_probs=79.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccc------------------cCCCCcccceeEEEEeec-----CeeEEEEecCCc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIV------------------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGV 221 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~------------------~~~~~~t~~~~~~~~~~~-----~~~i~liDTpG~ 221 (666)
.|+++|++|+|||||+++|++...... ....|+|.......+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987542221 011233433333333332 267899999998
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc
Q 005979 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (666)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~ 301 (666)
.++ ...+..++..+|++++|+|+..+....+..+++.+..
T Consensus 82 ~~f--------------------------------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-- 121 (213)
T cd04167 82 VNF--------------------------------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-- 121 (213)
T ss_pred cch--------------------------------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--
Confidence 752 1334577889999999999998887776666666654
Q ss_pred CCCcEEEEeccCCCC
Q 005979 302 MDKFIILAVNKCESP 316 (666)
Q Consensus 302 ~~~p~ilv~NK~D~~ 316 (666)
.+.|+++|+||+|+.
T Consensus 122 ~~~p~iiviNK~D~~ 136 (213)
T cd04167 122 EGLPIVLVINKIDRL 136 (213)
T ss_pred cCCCEEEEEECcccC
Confidence 368999999999985
No 482
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=121.61 Aligned_cols=157 Identities=14% Similarity=0.051 Sum_probs=103.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
..+.++|--|+|||||+|.+..... ....+-|+-+....++ .+...+.+||.||+.+|..+|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~t-kgnvtiklwD~gGq~rfrsmW-------------- 82 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRSMW-------------- 82 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEec-cCceEEEEEecCCCccHHHHH--------------
Confidence 5799999999999999999874321 1222223333333443 356799999999999987655
Q ss_pred HHHHhhCCeEEEEeeccccC--CHHHHHHHHHHH---HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 452 FRAIRRSDVVALVIEAMACI--TEQDCRIAERIE---QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~--t~~d~~i~~~i~---~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
.+|.|+++++++|+|+.++- +-.-.++...+. -.++|+++.+||.|+...- .. ....+++.-.--....+.+
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~-~~li~rmgL~sitdREvcC 159 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SK-IALIERMGLSSITDREVCC 159 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cH-HHHHHHhCccccccceEEE
Confidence 35889999999999998742 111111222222 2489999999999996532 11 1122222111011123669
Q ss_pred EEEeCccCCCHHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+.+|++...|++.+.++|.+..+
T Consensus 160 ~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHhh
Confidence 99999999999999999986543
No 483
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.2e-13 Score=125.30 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+++.++|..|||||.|+-+++......+.+ .....+.....+.+++ .++++|||.|++.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~----------------- 67 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES----------------- 67 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-----------------
Confidence 4578999999999999999999987443333 3334444455566666 4689999999975
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
+...+..+++.|-.+|+|+|....- ...+.++.+.-+....+..++++.||+|+...
T Consensus 68 ---------------------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 68 ---------------------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred ---------------------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 2355668889999999999987542 22333333322222356678899999999765
Q ss_pred chhhH---HHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~~~---~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
..... ..| .++|+....+||+++.|+.+.+..+...+
T Consensus 127 R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 127 REVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 43222 223 34788888999999999999987765544
No 484
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.49 E-value=5.3e-13 Score=133.34 Aligned_cols=151 Identities=14% Similarity=0.073 Sum_probs=98.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|++||.+|||||||++++++... ...+.++..+.....+.+++ ..+.+|||+|...+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~--------------- 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN--------------- 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH---------------
Confidence 3699999999999999999998653 22232222222223345555 4578899999864221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++|+|+|....-+.... .+...++....+.|+++|+||+|+....
T Consensus 65 -----------------------l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 65 -----------------------VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred -----------------------HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 122456899999999999876333322 2333344444578999999999985421
Q ss_pred -------------h--hhHHHHH-hcCC-CCeeecccCCC-ChHHHHHHHHHH
Q 005979 320 -------------I--MQVSEFW-SLGF-SPLPISAISGT-GTGELLDLVCSE 354 (666)
Q Consensus 320 -------------~--~~~~~~~-~~~~-~~i~iSa~~g~-Gi~eLl~~I~~~ 354 (666)
. .+...+. ..|. .++++||+++. |+.++++.....
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 0 0111122 3454 78999999988 499999887664
No 485
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=7.1e-13 Score=138.57 Aligned_cols=146 Identities=25% Similarity=0.315 Sum_probs=113.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc---------------ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI---------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~---------------~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
.++|+++.+...|||||+..|+.+.... .....|+|.-.....+. |++.+++++||||+-+|..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCccc
Confidence 4689999999999999999999644221 11233888877777776 5899999999999998853
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHH
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~ 515 (666)
...+.+...|.+|+++||.+|..+|....++...+.+.+-|+|+||+|....+..... ++.-
T Consensus 84 --------------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vv----d~vf 145 (603)
T COG1217 84 --------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVV----DEVF 145 (603)
T ss_pred --------------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHH----HHHH
Confidence 2345678899999999999999999999999999999999999999999776543333 3333
Q ss_pred HHHhcC------CCCCEEEEeCccCC
Q 005979 516 EKLRAL------DWAPIVYSTAIAGQ 535 (666)
Q Consensus 516 ~~l~~~------~~~~ii~vSAk~g~ 535 (666)
+.|..+ ...|+++.||+.|.
T Consensus 146 DLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 146 DLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred HHHHHhCCChhhCCCcEEEeeccCce
Confidence 333222 35799999999986
No 486
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.49 E-value=5e-13 Score=126.80 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=102.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
+|+++|.+|||||||++++.+... .....+....+.....+..++ ..+.+|||+|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------------- 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD----------------- 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH-----------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccccccccccccccccccccccccccccccccccc-----------------
Confidence 589999999999999999998752 222222222444445555555 458999999975421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcC-CCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYM-DKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~-~~p~ilv~NK~D~~~~~~ 320 (666)
......+..+|++++|+|....-+... ..+...+..... +.|+++|+||+|+.....
T Consensus 63 ---------------------~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 63 ---------------------SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp ---------------------HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred ---------------------ccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 112245788999999999875422221 133444444433 589999999999876322
Q ss_pred h---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 321 M---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 321 ~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. +...+ ..++..++.+||+++.|+.+++..+.+.+
T Consensus 122 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 122 VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 12222 34567899999999999999999988765
No 487
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=140.96 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=111.4
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH-HHHHhcCC-CCeeecccC
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEFWSLGF-SPLPISAIS 340 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~-~~~~~~~~-~~i~iSa~~ 340 (666)
.+.+...++.+|+||.|+||++++..-..++-+++.....++..|+|+||+|+.+.+..+. ..++...+ .+++..+..
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 4667778899999999999999987777777777765445689999999999998765543 33334334 333333332
Q ss_pred CCChH--H-------HHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEe
Q 005979 341 GTGTG--E-------LLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID 411 (666)
Q Consensus 341 g~Gi~--e-------Ll~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~ 411 (666)
..+.. . -.+.+.+.+..... .-+-...++++|+|.|||||||+||+|.....+.+++.||.|+....
T Consensus 217 ~~~~~~~~~~~s~c~gae~l~~~lgny~~----~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe 292 (435)
T KOG2484|consen 217 MQNSNSKNLQSSVCFGAETLMKVLGNYCR----KGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE 292 (435)
T ss_pred cccccccccccchhhhHHHHHHHhcCccc----ccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh
Confidence 22210 0 01112222221110 00113458999999999999999999999988999999999998765
Q ss_pred EEEecCCCceEEEEEcCCCcc
Q 005979 412 TEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~ 432 (666)
+.+ +..+.|+|.||+.-
T Consensus 293 V~L----dk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 293 VKL----DKKIRLLDSPGIVP 309 (435)
T ss_pred eec----cCCceeccCCceee
Confidence 443 55799999999864
No 488
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.48 E-value=3e-13 Score=130.54 Aligned_cols=150 Identities=24% Similarity=0.303 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|..|+|||||+++|.......+.+ |.......+.+.+..+.++|.+|.......+
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w-------------- 75 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRPLW-------------- 75 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESSSGGGGGGG--------------
T ss_pred EEEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccccccccccc--------------
Confidence 3579999999999999999999765333222 3445555667789999999999986533222
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
..++..+|+++||+|+++.- ......+.+.+.. ...++|+++++||+|+....
T Consensus 76 ------------------------~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 76 ------------------------KSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp ------------------------GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred ------------------------eeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 24467899999999987532 2222334444432 23579999999999987532
Q ss_pred h-hhHHHHH---hc----CCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 I-MQVSEFW---SL----GFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 ~-~~~~~~~---~~----~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
. .+..... .+ .+.++.+||.+|.|+.+.+++|.+.
T Consensus 132 ~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 132 SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 1 1222221 11 2357899999999999999999865
No 489
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=131.22 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=114.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+|+++||..++|||+|+..+... .+.....| |..|.....+...+|+ .+.||||+|+.++..+.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvP-TVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp---------- 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVP-TVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP---------- 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccC-eEEccceEEEEecCCCEEEEeeeecCCCcccccccc----------
Confidence 479999999999999999888744 45555555 4446666666542355 678999999987744332
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHH--------HHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYE--------QDVRE 516 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~--------~~l~~ 516 (666)
+ .+..+|++|+++++.++.+..+. +|+.++..+ +.|+|+|++|.||.... ...+... ..-..
T Consensus 72 ---l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~--~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 72 ---L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP--STLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred ---c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH--HHHHHHHhccCCcccHHHHH
Confidence 2 67899999999999988777654 488888876 59999999999997432 1111111 11122
Q ss_pred HH-hcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 517 KL-RALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 517 ~l-~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
.+ .+++-..++++||++..|+.++|+....+.
T Consensus 146 ~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 146 ELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 22 234447799999999999999999887554
No 490
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.48 E-value=5.9e-13 Score=148.84 Aligned_cols=115 Identities=21% Similarity=0.276 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-----c----------cC------CCCcccceeEEEEeecCeeEEEEecCCc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----V----------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----~----------~~------~~~~t~~~~~~~~~~~~~~i~liDTpG~ 221 (666)
..+|+|+||+|+|||||.++|+....++ + .+ ..|.|.......+.|++..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4579999999999999999996321110 1 11 1133333444556788999999999998
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc
Q 005979 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (666)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~ 301 (666)
.++. ..+.+++..+|++++|+|+..++..+...+++..+.
T Consensus 90 ~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-- 129 (526)
T PRK00741 90 EDFS--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-- 129 (526)
T ss_pred hhhH--------------------------------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--
Confidence 6521 234567789999999999999998888888887766
Q ss_pred CCCcEEEEeccCCCCc
Q 005979 302 MDKFIILAVNKCESPR 317 (666)
Q Consensus 302 ~~~p~ilv~NK~D~~~ 317 (666)
.+.|+++++||+|+..
T Consensus 130 ~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 130 RDTPIFTFINKLDRDG 145 (526)
T ss_pred cCCCEEEEEECCcccc
Confidence 5899999999999753
No 491
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.48 E-value=3e-13 Score=157.31 Aligned_cols=139 Identities=21% Similarity=0.299 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-----cc------------CCCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----VV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+||+|+|||||+|+|+.....+ +. ...|+|.+.....+.|++.++.+|||||+.++.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 5589999999999999999997432111 11 135788888888999999999999999996521
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
..+..+++.+|+++||+|+..+...++..+++++.+ .+.|
T Consensus 90 --------------------------------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p 129 (689)
T TIGR00484 90 --------------------------------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVP 129 (689)
T ss_pred --------------------------------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCC
Confidence 234577889999999999999999988888888876 5789
Q ss_pred EEEEeccCCCCccchhhHHH-H-HhcCC----CCeeecccCC
Q 005979 306 IILAVNKCESPRKGIMQVSE-F-WSLGF----SPLPISAISG 341 (666)
Q Consensus 306 ~ilv~NK~D~~~~~~~~~~~-~-~~~~~----~~i~iSa~~g 341 (666)
+++|+||+|+.......... + ..+++ ..+|+|+.++
T Consensus 130 ~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 130 RIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 99999999988644222211 1 12233 2477777766
No 492
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.48 E-value=3.3e-13 Score=148.45 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=103.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc------------------------------cccCCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++||.++|||||+.+|+..... ......|+|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 357999999999999999998742100 01123477888877778888899
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC------
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------ 286 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~------ 286 (666)
+.++||||+.++ .......+..+|++++|+|+..|.
T Consensus 87 i~lIDtPGh~~f--------------------------------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~ 128 (446)
T PTZ00141 87 FTIIDAPGHRDF--------------------------------------IKNMITGTSQADVAILVVASTAGEFEAGIS 128 (446)
T ss_pred EEEEECCChHHH--------------------------------------HHHHHHhhhhcCEEEEEEEcCCCceecccC
Confidence 999999998641 244567788999999999999886
Q ss_pred -CHHHHHHHHHHHhhcCCCc-EEEEeccCCCCc-----cchh----hHHH-HHhcC-----CCCeeecccCCCChHH
Q 005979 287 -TAADEEIADWLRKNYMDKF-IILAVNKCESPR-----KGIM----QVSE-FWSLG-----FSPLPISAISGTGTGE 346 (666)
Q Consensus 287 -~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~-----~~~~----~~~~-~~~~~-----~~~i~iSa~~g~Gi~e 346 (666)
..+..+.+..+.. .+.| +|+++||+|... .... +... +...| ++++++||.+|.|+.+
T Consensus 129 ~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 129 KDGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCccHHHHHHHHHH--cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 3677888887776 4666 678999999532 1111 1111 12233 3579999999999964
No 493
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.48 E-value=7.6e-13 Score=136.77 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=87.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCccc-----cc------C------CCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAI-----VV------D------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~-----~~------~------~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
+|+++|++|+|||||+|+|++..... +. + ..+.|.......+.|.+..+.+|||||+.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 48999999999999999997543211 10 0 1133444455567788899999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~i 307 (666)
...+..++..+|++++|+|+..+.......+++++.. .+.|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~i 120 (268)
T cd04170 78 -----------------------------------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRI 120 (268)
T ss_pred -----------------------------------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 1345577889999999999999888887778877766 578999
Q ss_pred EEeccCCCCccc
Q 005979 308 LAVNKCESPRKG 319 (666)
Q Consensus 308 lv~NK~D~~~~~ 319 (666)
+|+||+|+....
T Consensus 121 ivvNK~D~~~~~ 132 (268)
T cd04170 121 IFINKMDRERAD 132 (268)
T ss_pred EEEECCccCCCC
Confidence 999999987653
No 494
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.47 E-value=9.3e-13 Score=138.96 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=73.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC----------------ceEEEEEcCCCccccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKRAA 435 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~~~liDTpG~~~~~~ 435 (666)
++|+++|.||||||||+|+|++.. ..++++|+||+++..+.+...+. ..+.++||||+.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a- 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA- 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC-
Confidence 689999999999999999999887 78999999999998777665332 258999999997532
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeecc
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~ 468 (666)
........+++..++.||++++|+|+.
T Consensus 81 ------~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 ------SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ------ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 223345678888999999999999984
No 495
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.47 E-value=2e-13 Score=139.69 Aligned_cols=156 Identities=24% Similarity=0.336 Sum_probs=118.0
Q ss_pred HHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHH-HHHhcCCC--CeeecccCCC
Q 005979 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFWSLGFS--PLPISAISGT 342 (666)
Q Consensus 266 ~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~-~~~~~~~~--~i~iSa~~g~ 342 (666)
....+..+|+|+.|+|+++++..--..+..+|++....+.+|+|+||||+........+ ......++ .|.-|-.+..
T Consensus 207 LyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 207 LYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSF 286 (572)
T ss_pred HHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCcc
Confidence 33456779999999999999887778899999997778889999999999876433222 12233343 2444656677
Q ss_pred ChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceE
Q 005979 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF 422 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~ 422 (666)
|-..|+..+.++-.-.. ..+.+.|+++|.||+||||+||+|-....+.+.++||-|.-..+..+. +++
T Consensus 287 GKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm----krI 354 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM----KRI 354 (572)
T ss_pred chhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH----hce
Confidence 88888877654433111 123578999999999999999999999999999999999866654443 479
Q ss_pred EEEEcCCCccc
Q 005979 423 RLIDTAGIRKR 433 (666)
Q Consensus 423 ~liDTpG~~~~ 433 (666)
.|||+||+...
T Consensus 355 fLIDcPGvVyp 365 (572)
T KOG2423|consen 355 FLIDCPGVVYP 365 (572)
T ss_pred eEecCCCccCC
Confidence 99999998754
No 496
>PTZ00099 rab6; Provisional
Probab=99.46 E-value=7.2e-13 Score=127.96 Aligned_cols=129 Identities=17% Similarity=0.062 Sum_probs=85.9
Q ss_pred CCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHH
Q 005979 402 ISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIA 479 (666)
Q Consensus 402 ~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~ 479 (666)
.|++..+.....+...+ ...+.||||||+.++..+. ..+++.||++|+|+|++++.+.++. .|+
T Consensus 10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~--------------~~~~~~ad~~ilv~D~t~~~sf~~~~~w~ 75 (176)
T PTZ00099 10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI--------------PSYIRDSAAAIVVYDITNRQSFENTTKWI 75 (176)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhcc--------------HHHhCCCcEEEEEEECCCHHHHHHHHHHH
Confidence 34444555544444322 2478999999987654322 2478999999999999987665554 366
Q ss_pred HHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 480 ERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 480 ~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..+... +.|+|||+||+||...+.....+ .... ....+..++++||++|.||+++|++|.+.+.+
T Consensus 76 ~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e-----~~~~-~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 76 QDILNERGKDVIIALVGNKTDLGDLRKVTYEE-----GMQK-AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHhcCCCCeEEEEEECcccccccCCCHHH-----HHHH-HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 555442 57889999999996533322111 1112 22224578999999999999999999866543
No 497
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.46 E-value=6e-13 Score=145.93 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=107.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc--ccCCCCcccceeEEEEe---------------e-----------------
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSF---------------W----------------- 208 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~--~~~~~~~t~~~~~~~~~---------------~----------------- 208 (666)
..+|+++||.+.|||||+.+|+|..... -+...|.|.+..+.... +
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 3589999999999999999999864211 12223555443332110 0
Q ss_pred -cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-C
Q 005979 209 -GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-L 286 (666)
Q Consensus 209 -~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~-~ 286 (666)
..+.+.++||||+.. +.+.+...+..+|++++|+|+..+ .
T Consensus 114 ~~~~~i~~IDtPGH~~--------------------------------------fi~~m~~g~~~~D~alLVVda~~g~~ 155 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDI--------------------------------------LMATMLNGAAVMDAALLLIAANESCP 155 (460)
T ss_pred cccceEeeeeCCCHHH--------------------------------------HHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 024689999999854 224556778899999999999986 6
Q ss_pred CHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-h----HHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 287 TAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 287 ~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~----~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.++..+.+..+... .-+++|+|+||+|+.+.... . ...+.. .+.+++++||.+|.|++.|++.|.+.++.
T Consensus 156 ~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 156 QPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred chhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 77776666655542 23568999999998753221 1 111111 24578999999999999999999877764
Q ss_pred h
Q 005979 358 V 358 (666)
Q Consensus 358 ~ 358 (666)
.
T Consensus 235 ~ 235 (460)
T PTZ00327 235 P 235 (460)
T ss_pred C
Confidence 3
No 498
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=2.3e-12 Score=128.74 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=110.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc-ccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..+|+++|.+|||||||+++++.... ....++.+. +.....+.. +...+.+|||+|.....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~i~~~Dt~g~~~~~-------------- 72 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV--EVHPLKFYTNCGPICFNVWDTAGQEKFG-------------- 72 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--EEEEEEEEECCeEEEEEEEECCCchhhh--------------
Confidence 46899999999999999987654432 111122222 222222222 33678999999975421
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
......+..++++++|+|.....+.... .+...+.....+.|+++|+||+|+...
T Consensus 73 ------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 73 ------------------------GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR 128 (215)
T ss_pred ------------------------hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 1122345678999999999865443322 233333333357899999999998643
Q ss_pred ch-hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCC-----CChhHHHH
Q 005979 319 GI-MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPN-----VGKSSILN 389 (666)
Q Consensus 319 ~~-~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~n-----vGKSSLin 389 (666)
.. .....+ ...++.++++||++|.|+.+++..|.+.+.. .+++.++..|- +|-.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~-------------~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 129 QVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN-------------DPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred cCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh-------------cccceecCCcccCCCccccCHHHH
Confidence 21 111222 2345678999999999999999998876642 25677777777 66654433
No 499
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=2.2e-12 Score=132.62 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=89.9
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
...++|+++|.+||||||++|+|+|+..+.++...+++......... .+|.++.+|||||+.+.... .....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~-------~e~~~ 107 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYI-------NDQAV 107 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEECCCCCchHHH-------HHHHH
Confidence 34689999999999999999999999877777776665555444443 37889999999999764221 11111
Q ss_pred HHHHHHH--hhCCeEEEEeecc-ccCCHHHHHHHHHHHHh-----CCcEEEEEecccCCCCcc
Q 005979 449 NRAFRAI--RRSDVVALVIEAM-ACITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKN 503 (666)
Q Consensus 449 ~~~~~~i--~~advvllViDa~-~~~t~~d~~i~~~i~~~-----~~pvIlv~NK~Dl~~~~~ 503 (666)
.....++ ...|++|||.... ..++..|..+++.+.+. -.++|+|++++|..+++.
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~ 170 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG 170 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC
Confidence 1111112 3699999995443 25777888888887764 267999999999875433
No 500
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.46 E-value=9.1e-13 Score=122.08 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
..+.+|.|+|.+|||||||.|++...+.. ......+..+.....+.++++ .+++|||+|.+.+..+.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~-~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~--------- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV--------- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHH-HHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc---------
Confidence 45678999999999999999999887632 222334444555555566664 578999999987544321
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC--CCHHHHHHHHHHHhhc----CCCcEEEEecc
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRKNY----MDKFIILAVNK 312 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~--~~~~d~~i~~~l~~~~----~~~p~ilv~NK 312 (666)
..++.+|..++|.|.... +...+..--++|.... ..-|+|+++||
T Consensus 77 -----------------------------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 77 -----------------------------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred -----------------------------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 345789999999887654 3333344445565422 24589999999
Q ss_pred CCCCccc--h---hhHHHH--HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 313 CESPRKG--I---MQVSEF--WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 313 ~D~~~~~--~---~~~~~~--~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
+|..... . ..+..+ ....++++++||+.+.++.+.++.+.+..-..+
T Consensus 128 iD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 128 IDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 9986521 1 112223 234568999999999999999999887665444
Done!