Query 005979
Match_columns 666
No_of_seqs 616 out of 4630
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 3.5E-75 1.2E-79 641.4 37.3 432 163-637 3-435 (436)
2 1mky_A Probable GTP-binding pr 100.0 4.6E-72 1.6E-76 617.1 44.3 435 164-638 2-439 (439)
3 4dcu_A GTP-binding protein ENG 100.0 8.9E-73 3E-77 625.7 38.0 434 161-637 21-455 (456)
4 3qq5_A Small GTP-binding prote 99.9 7.8E-29 2.7E-33 268.8 1.3 269 369-666 32-326 (423)
5 4djt_A GTP-binding nuclear pro 99.9 4.9E-26 1.7E-30 225.8 7.5 201 370-596 10-217 (218)
6 3iev_A GTP-binding protein ERA 99.9 1.8E-22 6.3E-27 211.3 19.8 174 371-553 10-185 (308)
7 2gj8_A MNME, tRNA modification 99.9 3.9E-23 1.3E-27 197.5 13.3 159 371-549 4-165 (172)
8 4dhe_A Probable GTP-binding pr 99.9 1.7E-22 5.7E-27 200.8 17.1 175 370-550 28-211 (223)
9 1wf3_A GTP-binding protein; GT 99.9 9.9E-23 3.4E-27 212.3 15.5 164 371-549 7-172 (301)
10 1mky_A Probable GTP-binding pr 99.9 2.6E-22 8.8E-27 220.6 19.3 165 372-550 2-166 (439)
11 1xzp_A Probable tRNA modificat 99.9 3.2E-22 1.1E-26 220.6 17.5 160 371-548 243-403 (482)
12 1svi_A GTP-binding protein YSX 99.9 2.1E-21 7E-26 188.5 19.9 169 369-548 21-193 (195)
13 2dyk_A GTP-binding protein; GT 99.9 7.2E-22 2.5E-26 185.1 15.4 158 372-547 2-159 (161)
14 3pqc_A Probable GTP-binding pr 99.9 4.8E-21 1.6E-25 185.4 20.7 169 370-549 22-193 (195)
15 4dkx_A RAS-related protein RAB 99.9 5E-22 1.7E-26 197.0 13.8 157 371-549 13-175 (216)
16 3gee_A MNME, tRNA modification 99.9 1.2E-22 4E-27 224.0 10.2 162 370-549 232-397 (476)
17 2g6b_A RAS-related protein RAB 99.9 1.5E-21 5E-26 186.7 15.0 165 370-555 9-179 (180)
18 2lkc_A Translation initiation 99.9 1.5E-21 5.2E-26 186.2 14.7 163 370-552 7-173 (178)
19 3i8s_A Ferrous iron transport 99.9 6.3E-22 2.1E-26 203.8 12.4 186 371-569 3-190 (274)
20 2qu8_A Putative nucleolar GTP- 99.9 4.9E-21 1.7E-25 191.4 18.2 187 370-567 28-223 (228)
21 3iby_A Ferrous iron transport 99.9 7.6E-22 2.6E-26 200.9 11.7 163 372-547 2-164 (256)
22 2e87_A Hypothetical protein PH 99.9 3.3E-22 1.1E-26 213.8 9.4 264 286-567 74-353 (357)
23 2wji_A Ferrous iron transport 99.9 1.5E-21 5.1E-26 184.9 12.8 158 372-548 4-163 (165)
24 3q72_A GTP-binding protein RAD 99.9 2.9E-21 9.9E-26 182.1 14.8 158 371-550 2-164 (166)
25 2dyk_A GTP-binding protein; GT 99.9 5.7E-21 1.9E-25 179.0 16.0 159 164-356 2-161 (161)
26 3a1s_A Iron(II) transport prot 99.9 2.3E-21 7.9E-26 197.6 14.0 162 371-549 5-166 (258)
27 4bas_A ADP-ribosylation factor 99.9 6.5E-21 2.2E-25 185.4 16.5 161 369-551 15-190 (199)
28 3ec1_A YQEH GTPase; atnos1, at 99.9 4.2E-23 1.4E-27 221.2 0.9 235 267-537 66-318 (369)
29 2hjg_A GTP-binding protein ENG 99.9 1.3E-21 4.3E-26 214.9 12.7 179 372-567 4-199 (436)
30 3tw8_B RAS-related protein RAB 99.9 3.7E-21 1.3E-25 183.8 14.2 160 369-550 7-171 (181)
31 1wf3_A GTP-binding protein; GT 99.9 4.2E-21 1.4E-25 200.0 15.4 163 164-357 8-173 (301)
32 2nzj_A GTP-binding protein REM 99.8 3.4E-21 1.2E-25 183.1 12.5 159 371-550 4-169 (175)
33 3tkl_A RAS-related protein RAB 99.8 1.1E-20 3.9E-25 183.3 16.5 159 370-550 15-179 (196)
34 3geh_A MNME, tRNA modification 99.8 2.5E-21 8.7E-26 212.6 12.9 162 370-551 223-385 (462)
35 3h2y_A GTPase family protein; 99.8 1.2E-22 4E-27 217.5 2.0 209 265-502 62-289 (368)
36 3iev_A GTP-binding protein ERA 99.8 2.6E-20 9E-25 194.9 19.6 165 164-358 11-183 (308)
37 3b1v_A Ferrous iron uptake tra 99.8 4.5E-21 1.5E-25 196.8 12.9 159 371-549 3-163 (272)
38 2aka_B Dynamin-1; fusion prote 99.8 3.5E-21 1.2E-25 200.4 12.2 216 344-570 4-282 (299)
39 1c1y_A RAS-related protein RAP 99.8 1.6E-20 5.5E-25 176.8 15.6 157 371-548 3-165 (167)
40 1upt_A ARL1, ADP-ribosylation 99.8 2.4E-20 8.1E-25 176.6 16.7 159 370-550 6-169 (171)
41 1z08_A RAS-related protein RAB 99.8 1.7E-20 5.6E-25 177.5 14.7 158 370-549 5-168 (170)
42 3k53_A Ferrous iron transport 99.8 2.9E-20 9.7E-25 191.1 17.5 165 371-552 3-168 (271)
43 1zj6_A ADP-ribosylation factor 99.8 3.6E-20 1.2E-24 178.8 17.1 157 371-549 16-177 (187)
44 2fu5_C RAS-related protein RAB 99.8 6.2E-21 2.1E-25 183.1 11.4 158 370-549 7-170 (183)
45 2il1_A RAB12; G-protein, GDP, 99.8 3.4E-20 1.2E-24 180.1 16.7 159 370-549 25-189 (192)
46 4dhe_A Probable GTP-binding pr 99.8 3.7E-20 1.2E-24 183.9 17.0 174 159-359 25-213 (223)
47 3t5g_A GTP-binding protein RHE 99.8 2.1E-20 7.1E-25 179.1 14.6 158 371-551 6-170 (181)
48 2hxs_A RAB-26, RAS-related pro 99.8 9.5E-21 3.3E-25 180.7 12.1 159 370-549 5-172 (178)
49 3cbq_A GTP-binding protein REM 99.8 3E-20 1E-24 181.2 15.9 161 369-550 21-188 (195)
50 2fg5_A RAB-22B, RAS-related pr 99.8 2.4E-20 8.1E-25 181.1 15.0 158 370-548 22-184 (192)
51 1ky3_A GTP-binding protein YPT 99.8 2.6E-20 9E-25 177.9 14.9 162 370-550 7-178 (182)
52 1g16_A RAS-related protein SEC 99.8 1.9E-20 6.6E-25 176.8 13.7 157 371-550 3-165 (170)
53 4gzl_A RAS-related C3 botulinu 99.8 2.4E-20 8.2E-25 183.1 14.8 158 370-546 29-201 (204)
54 3reg_A RHO-like small GTPase; 99.8 3.7E-20 1.3E-24 179.8 15.9 161 370-550 22-188 (194)
55 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.3E-20 1.5E-24 176.0 16.1 158 370-549 6-173 (177)
56 2q3h_A RAS homolog gene family 99.8 3.5E-20 1.2E-24 180.9 15.7 162 369-550 18-195 (201)
57 1z0j_A RAB-22, RAS-related pro 99.8 3.3E-20 1.1E-24 175.2 14.7 156 371-547 6-166 (170)
58 2bcg_Y Protein YP2, GTP-bindin 99.8 4E-20 1.4E-24 181.4 15.8 159 370-550 7-171 (206)
59 1r8s_A ADP-ribosylation factor 99.8 5.4E-20 1.8E-24 173.0 15.9 155 372-548 1-160 (164)
60 1kao_A RAP2A; GTP-binding prot 99.8 4.7E-20 1.6E-24 173.3 15.5 157 371-550 3-166 (167)
61 2hup_A RAS-related protein RAB 99.8 5.4E-20 1.8E-24 180.1 16.3 161 369-550 27-193 (201)
62 1fzq_A ADP-ribosylation factor 99.8 3E-20 1E-24 178.7 14.2 157 370-548 15-176 (181)
63 2fn4_A P23, RAS-related protei 99.8 3.4E-20 1.1E-24 177.0 14.4 158 370-550 8-172 (181)
64 2erx_A GTP-binding protein DI- 99.8 2.5E-20 8.7E-25 176.2 13.2 158 371-550 3-167 (172)
65 1ksh_A ARF-like protein 2; sma 99.8 4.1E-20 1.4E-24 178.0 14.9 159 370-550 17-180 (186)
66 1vg8_A RAS-related protein RAB 99.8 9.3E-20 3.2E-24 178.5 17.5 158 370-549 7-174 (207)
67 3clv_A RAB5 protein, putative; 99.8 1.2E-19 4.1E-24 176.6 18.1 157 370-549 6-203 (208)
68 2efe_B Small GTP-binding prote 99.8 5.6E-20 1.9E-24 175.8 15.5 158 370-548 11-173 (181)
69 2g3y_A GTP-binding protein GEM 99.8 2.4E-20 8.1E-25 184.3 13.2 160 370-549 36-202 (211)
70 3j2k_7 ERF3, eukaryotic polype 99.8 5.8E-20 2E-24 201.4 17.6 158 370-542 16-217 (439)
71 2ew1_A RAS-related protein RAB 99.8 2.6E-20 9.1E-25 182.6 13.4 158 370-549 25-188 (201)
72 1u8z_A RAS-related protein RAL 99.8 8.3E-20 2.8E-24 171.8 16.2 156 371-549 4-166 (168)
73 2h17_A ADP-ribosylation factor 99.8 4.3E-20 1.5E-24 177.4 14.5 156 369-546 19-179 (181)
74 2gf9_A RAS-related protein RAB 99.8 3.3E-20 1.1E-24 179.4 13.7 160 369-549 20-184 (189)
75 3q85_A GTP-binding protein REM 99.8 3.8E-20 1.3E-24 174.9 13.9 158 371-549 2-166 (169)
76 2cjw_A GTP-binding protein GEM 99.8 5E-20 1.7E-24 179.1 15.0 158 371-549 6-171 (192)
77 3t1o_A Gliding protein MGLA; G 99.8 3.1E-20 1E-24 180.0 13.4 160 370-550 13-192 (198)
78 1puj_A YLQF, conserved hypothe 99.8 2.5E-20 8.4E-25 192.2 13.3 163 263-433 14-178 (282)
79 2a5j_A RAS-related protein RAB 99.8 2.9E-20 1E-24 180.2 13.1 159 369-549 19-183 (191)
80 3llu_A RAS-related GTP-binding 99.8 8.9E-20 3E-24 177.7 16.6 167 369-547 18-194 (196)
81 1r2q_A RAS-related protein RAB 99.8 4.9E-20 1.7E-24 173.9 14.3 156 371-547 6-166 (170)
82 2x77_A ADP-ribosylation factor 99.8 5.8E-20 2E-24 177.6 15.0 159 370-550 21-184 (189)
83 2oil_A CATX-8, RAS-related pro 99.8 3.2E-20 1.1E-24 179.9 13.2 160 369-549 23-187 (193)
84 4dcu_A GTP-binding protein ENG 99.8 1.7E-20 5.8E-25 207.1 12.6 162 371-549 23-184 (456)
85 2h57_A ADP-ribosylation factor 99.8 6E-20 2.1E-24 177.7 15.1 156 370-549 20-186 (190)
86 2p5s_A RAS and EF-hand domain 99.8 9.5E-21 3.2E-25 185.0 9.2 158 370-549 27-196 (199)
87 3kkq_A RAS-related protein M-R 99.8 1E-19 3.5E-24 174.6 16.2 157 370-549 17-181 (183)
88 3oes_A GTPase rhebl1; small GT 99.8 2.7E-20 9.3E-25 182.0 12.4 159 370-550 23-187 (201)
89 4dsu_A GTPase KRAS, isoform 2B 99.8 6E-20 2.1E-24 176.7 14.6 156 371-550 4-166 (189)
90 1f6b_A SAR1; gtpases, N-termin 99.8 6.5E-20 2.2E-24 179.2 15.0 150 371-546 25-195 (198)
91 2wjg_A FEOB, ferrous iron tran 99.8 3.9E-20 1.3E-24 178.4 13.0 163 371-552 7-171 (188)
92 3bc1_A RAS-related protein RAB 99.8 7.6E-20 2.6E-24 176.6 15.1 160 370-550 10-185 (195)
93 3ihw_A Centg3; RAS, centaurin, 99.8 1.2E-19 4.1E-24 175.2 16.4 155 370-550 19-180 (184)
94 2atx_A Small GTP binding prote 99.8 8.7E-20 3E-24 177.1 15.5 159 370-548 17-191 (194)
95 1z2a_A RAS-related protein RAB 99.8 3.6E-20 1.2E-24 174.6 12.4 158 370-548 4-165 (168)
96 2a9k_A RAS-related protein RAL 99.8 1.6E-19 5.5E-24 173.2 17.1 158 370-550 17-181 (187)
97 2y8e_A RAB-protein 6, GH09086P 99.8 7E-20 2.4E-24 174.5 14.4 156 371-548 14-175 (179)
98 1ega_A Protein (GTP-binding pr 99.8 2.1E-20 7.2E-25 194.9 11.6 166 372-550 9-175 (301)
99 2bme_A RAB4A, RAS-related prot 99.8 5.7E-20 2E-24 176.7 13.8 158 370-549 9-172 (186)
100 3iby_A Ferrous iron transport 99.8 3.4E-20 1.2E-24 188.8 12.8 158 164-354 2-164 (256)
101 1m2o_B GTP-binding protein SAR 99.8 1.2E-19 4.2E-24 175.9 16.2 150 371-546 23-188 (190)
102 2iwr_A Centaurin gamma 1; ANK 99.8 1.1E-19 3.7E-24 173.6 15.5 151 371-549 7-168 (178)
103 1z0f_A RAB14, member RAS oncog 99.8 7.6E-20 2.6E-24 174.2 14.4 158 370-548 14-176 (179)
104 2j0v_A RAC-like GTP-binding pr 99.8 4.4E-20 1.5E-24 181.9 13.1 160 370-550 8-180 (212)
105 3cph_A RAS-related protein SEC 99.8 7.4E-20 2.5E-24 180.1 14.6 157 370-549 19-181 (213)
106 2o52_A RAS-related protein RAB 99.8 4.1E-20 1.4E-24 180.8 12.6 159 369-549 23-187 (200)
107 1mh1_A RAC1; GTP-binding, GTPa 99.8 7.7E-20 2.6E-24 175.5 14.2 160 371-549 5-179 (186)
108 1zbd_A Rabphilin-3A; G protein 99.8 7.7E-20 2.6E-24 178.8 14.4 159 370-549 7-170 (203)
109 3cpj_B GTP-binding protein YPT 99.8 4.7E-20 1.6E-24 183.6 13.1 160 369-550 11-176 (223)
110 2gj8_A MNME, tRNA modification 99.8 2.8E-20 9.6E-25 177.5 10.9 161 164-357 5-166 (172)
111 1ek0_A Protein (GTP-binding pr 99.8 1.2E-19 4.1E-24 171.2 15.1 158 371-547 3-166 (170)
112 2bov_A RAla, RAS-related prote 99.8 2.2E-19 7.4E-24 175.6 17.4 157 370-549 13-176 (206)
113 3c5c_A RAS-like protein 12; GD 99.8 5.7E-20 2E-24 177.7 13.0 156 369-548 19-184 (187)
114 1moz_A ARL1, ADP-ribosylation 99.8 4.8E-20 1.7E-24 176.7 12.4 159 370-550 17-180 (183)
115 2b6h_A ADP-ribosylation factor 99.8 8.2E-20 2.8E-24 177.5 13.9 157 370-548 28-189 (192)
116 3bwd_D RAC-like GTP-binding pr 99.8 3.5E-20 1.2E-24 177.4 10.9 162 370-548 7-179 (182)
117 3q3j_B RHO-related GTP-binding 99.8 7.8E-20 2.7E-24 181.0 13.7 159 370-550 26-203 (214)
118 1zd9_A ADP-ribosylation factor 99.8 6.4E-20 2.2E-24 177.4 12.7 157 371-548 22-183 (188)
119 2j1l_A RHO-related GTP-binding 99.8 1.1E-19 3.9E-24 179.6 14.8 163 370-551 33-210 (214)
120 2gco_A H9, RHO-related GTP-bin 99.8 1.3E-19 4.5E-24 177.2 14.8 159 371-548 25-198 (201)
121 2fh5_B SR-beta, signal recogni 99.8 3.1E-19 1.1E-23 176.0 17.5 158 370-547 6-213 (214)
122 3dz8_A RAS-related protein RAB 99.8 5.6E-20 1.9E-24 178.1 11.6 162 368-550 20-186 (191)
123 1xzp_A Probable tRNA modificat 99.8 1.2E-19 4.1E-24 200.1 15.4 159 164-356 244-404 (482)
124 1x3s_A RAS-related protein RAB 99.8 1.7E-19 5.8E-24 174.6 14.5 159 370-550 14-178 (195)
125 3gj0_A GTP-binding nuclear pro 99.8 5.6E-20 1.9E-24 182.6 11.1 156 370-548 14-173 (221)
126 1z06_A RAS-related protein RAB 99.8 1.8E-19 6.2E-24 174.2 14.3 158 370-548 19-186 (189)
127 1svi_A GTP-binding protein YSX 99.8 7.5E-19 2.6E-23 170.3 18.7 164 160-356 20-194 (195)
128 2xtp_A GTPase IMAP family memb 99.8 2.5E-19 8.7E-24 182.7 16.0 175 370-551 21-209 (260)
129 2ce2_X GTPase HRAS; signaling 99.8 3.7E-19 1.2E-23 166.8 15.5 154 372-549 4-164 (166)
130 1f60_A Elongation factor EEF1A 99.8 1E-20 3.5E-25 208.5 5.5 197 371-584 7-246 (458)
131 2lkc_A Translation initiation 99.8 2.1E-19 7.3E-24 171.3 13.9 157 161-358 6-172 (178)
132 3r7w_A Gtpase1, GTP-binding pr 99.8 3E-19 1E-23 186.8 16.1 166 371-546 3-177 (307)
133 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-19 4.5E-24 202.4 14.2 168 370-559 321-493 (497)
134 3con_A GTPase NRAS; structural 99.8 7.3E-19 2.5E-23 169.8 17.5 156 371-550 21-183 (190)
135 2f7s_A C25KG, RAS-related prot 99.8 1.8E-19 6.3E-24 178.1 13.2 160 369-549 23-198 (217)
136 2cxx_A Probable GTP-binding pr 99.8 5E-19 1.7E-23 170.5 16.0 165 372-550 2-184 (190)
137 2yc2_C IFT27, small RAB-relate 99.8 5.2E-20 1.8E-24 180.2 8.9 160 370-549 19-191 (208)
138 2qtf_A Protein HFLX, GTP-bindi 99.8 4.4E-19 1.5E-23 189.3 16.7 191 137-358 153-355 (364)
139 2fv8_A H6, RHO-related GTP-bin 99.8 3.2E-19 1.1E-23 175.3 14.4 160 371-549 25-199 (207)
140 3pqc_A Probable GTP-binding pr 99.8 2.1E-18 7.3E-23 166.7 19.9 169 159-357 19-194 (195)
141 3gee_A MNME, tRNA modification 99.8 2.6E-19 8.9E-24 197.3 15.1 162 164-356 234-397 (476)
142 1m7b_A RND3/RHOE small GTP-bin 99.8 2.2E-19 7.4E-24 172.9 12.8 158 370-548 6-181 (184)
143 1ega_A Protein (GTP-binding pr 99.8 1.6E-19 5.5E-24 188.2 12.6 161 164-357 9-175 (301)
144 3tr5_A RF-3, peptide chain rel 99.8 1.8E-19 6.1E-24 201.1 13.2 117 370-501 12-149 (528)
145 3t5d_A Septin-7; GTP-binding p 99.8 4.6E-19 1.6E-23 182.4 15.2 170 371-546 8-200 (274)
146 2gf0_A GTP-binding protein DI- 99.8 3.8E-19 1.3E-23 172.8 13.7 160 370-552 7-173 (199)
147 2wji_A Ferrous iron transport 99.8 8.1E-19 2.8E-23 166.0 15.5 156 164-356 4-164 (165)
148 3lxw_A GTPase IMAP family memb 99.8 5.4E-19 1.8E-23 179.0 15.2 180 370-554 20-212 (247)
149 1jwy_B Dynamin A GTPase domain 99.8 4.2E-19 1.4E-23 186.2 14.8 214 345-570 4-288 (315)
150 3l0i_B RAS-related protein RAB 99.8 6.3E-21 2.2E-25 186.2 0.4 157 370-548 32-194 (199)
151 3i8s_A Ferrous iron transport 99.8 1.8E-19 6.1E-24 185.4 10.9 163 163-356 3-168 (274)
152 2atv_A RERG, RAS-like estrogen 99.8 6.4E-19 2.2E-23 171.4 14.1 157 370-549 27-190 (196)
153 1gwn_A RHO-related GTP-binding 99.8 4.3E-19 1.5E-23 174.5 12.9 160 370-548 27-202 (205)
154 3izy_P Translation initiation 99.8 1.8E-20 6.3E-25 208.2 3.4 164 370-549 3-167 (537)
155 2xtp_A GTPase IMAP family memb 99.8 9E-19 3.1E-23 178.6 15.2 169 162-358 21-209 (260)
156 2c78_A Elongation factor TU-A; 99.8 8.5E-19 2.9E-23 190.5 15.3 151 370-537 10-181 (405)
157 2zej_A Dardarin, leucine-rich 99.8 8.2E-19 2.8E-23 169.0 13.5 162 372-550 3-178 (184)
158 1wb1_A Translation elongation 99.8 1.2E-18 4.1E-23 193.0 16.5 161 371-549 19-188 (482)
159 3a1s_A Iron(II) transport prot 99.8 1.4E-18 4.9E-23 177.0 15.8 156 164-356 6-166 (258)
160 2qu8_A Putative nucleolar GTP- 99.8 2.2E-18 7.4E-23 172.1 16.6 167 162-358 28-206 (228)
161 3tw8_B RAS-related protein RAB 99.8 1.6E-18 5.4E-23 165.4 14.9 157 163-358 9-172 (181)
162 1lnz_A SPO0B-associated GTP-bi 99.8 2.5E-19 8.5E-24 189.3 10.0 164 371-550 158-330 (342)
163 1x3s_A RAS-related protein RAB 99.8 1.2E-18 4.2E-23 168.5 14.0 171 164-386 16-194 (195)
164 3o47_A ADP-ribosylation factor 99.8 6.6E-19 2.3E-23 185.9 12.2 158 370-549 164-326 (329)
165 3t5g_A GTP-binding protein RHE 99.8 8.5E-19 2.9E-23 167.8 11.3 155 163-357 6-169 (181)
166 3p26_A Elongation factor 1 alp 99.8 1.7E-18 5.9E-23 192.2 15.1 155 371-541 33-229 (483)
167 3sjy_A Translation initiation 99.8 4E-18 1.4E-22 185.0 17.2 164 369-549 6-191 (403)
168 2elf_A Protein translation elo 99.8 6E-18 2E-22 181.0 18.3 149 373-550 23-180 (370)
169 3b1v_A Ferrous iron uptake tra 99.8 1.4E-18 5E-23 178.1 12.8 156 163-356 3-163 (272)
170 3geh_A MNME, tRNA modification 99.8 2.6E-19 9E-24 196.5 7.7 160 164-357 225-384 (462)
171 2x2e_A Dynamin-1; nitration, h 99.8 6.8E-19 2.3E-23 187.8 10.6 218 342-570 7-287 (353)
172 1d2e_A Elongation factor TU (E 99.8 2.5E-18 8.5E-23 186.3 15.1 161 371-548 3-193 (397)
173 3th5_A RAS-related C3 botulinu 99.6 3.5E-20 1.2E-24 181.6 0.0 161 370-547 29-202 (204)
174 3qq5_A Small GTP-binding prote 99.8 1.7E-18 5.7E-23 187.8 13.0 162 161-357 32-196 (423)
175 1zun_B Sulfate adenylate trans 99.8 4.9E-18 1.7E-22 186.1 16.4 157 371-543 24-217 (434)
176 1lnz_A SPO0B-associated GTP-bi 99.8 2.9E-18 9.9E-23 181.2 14.0 164 163-359 158-332 (342)
177 3lxx_A GTPase IMAP family memb 99.8 4.8E-18 1.7E-22 171.0 14.7 177 370-553 28-217 (239)
178 2qtf_A Protein HFLX, GTP-bindi 99.8 2.1E-17 7.3E-22 176.2 20.2 169 371-549 179-353 (364)
179 2wkq_A NPH1-1, RAS-related C3 99.8 4.4E-18 1.5E-22 179.2 14.7 161 369-548 153-328 (332)
180 3cph_A RAS-related protein SEC 99.8 8.3E-18 2.8E-22 165.3 15.6 157 163-358 20-183 (213)
181 4a9a_A Ribosome-interacting GT 99.8 6.5E-18 2.2E-22 179.7 15.4 151 133-316 38-195 (376)
182 3k53_A Ferrous iron transport 99.8 6.5E-18 2.2E-22 173.5 14.9 158 163-357 3-166 (271)
183 3t5d_A Septin-7; GTP-binding p 99.7 9.3E-18 3.2E-22 172.6 15.2 167 163-356 8-203 (274)
184 3mca_A HBS1, elongation factor 99.7 6.6E-19 2.2E-23 199.5 7.2 153 370-538 176-371 (592)
185 2g6b_A RAS-related protein RAB 99.7 8.5E-18 2.9E-22 160.4 13.9 157 163-357 10-174 (180)
186 2wjg_A FEOB, ferrous iron tran 99.7 1.1E-17 3.7E-22 161.1 14.8 159 163-358 7-170 (188)
187 1r8s_A ADP-ribosylation factor 99.7 9.9E-18 3.4E-22 157.4 14.0 150 165-356 2-161 (164)
188 3izq_1 HBS1P, elongation facto 99.7 2E-18 6.8E-23 196.1 10.9 155 370-540 166-362 (611)
189 1jny_A EF-1-alpha, elongation 99.7 1.2E-18 4.2E-23 190.9 8.9 157 371-542 6-205 (435)
190 3cb4_D GTP-binding protein LEP 99.7 1.3E-17 4.4E-22 188.1 17.4 160 371-549 4-181 (599)
191 3tkl_A RAS-related protein RAB 99.7 2.4E-17 8.1E-22 159.7 16.9 158 163-359 16-181 (196)
192 3zvr_A Dynamin-1; hydrolase, D 99.7 4.6E-18 1.6E-22 194.6 13.2 229 334-570 16-307 (772)
193 1upt_A ARL1, ADP-ribosylation 99.7 1.3E-17 4.4E-22 157.6 14.2 153 163-357 7-169 (171)
194 2h57_A ADP-ribosylation factor 99.7 8.3E-18 2.8E-22 162.5 13.1 155 163-357 21-187 (190)
195 1z0j_A RAB-22, RAS-related pro 99.7 1.3E-17 4.6E-22 157.2 14.2 153 164-356 7-168 (170)
196 2e87_A Hypothetical protein PH 99.7 7.7E-17 2.6E-21 172.1 21.4 167 161-358 165-337 (357)
197 1r2q_A RAS-related protein RAB 99.7 7.9E-18 2.7E-22 158.6 12.1 153 164-356 7-168 (170)
198 2y8e_A RAB-protein 6, GH09086P 99.7 1.7E-17 5.7E-22 157.9 14.4 155 164-357 15-177 (179)
199 1zj6_A ADP-ribosylation factor 99.7 1.5E-17 5.3E-22 160.2 14.2 154 163-358 16-179 (187)
200 2il1_A RAB12; G-protein, GDP, 99.7 2.3E-17 7.9E-22 160.0 15.5 155 163-356 26-189 (192)
201 1g7s_A Translation initiation 99.7 1.2E-17 4E-22 188.6 15.4 165 370-550 4-218 (594)
202 1g16_A RAS-related protein SEC 99.7 2.1E-17 7.2E-22 155.8 14.8 155 164-357 4-165 (170)
203 3lxw_A GTPase IMAP family memb 99.7 1.2E-17 4.2E-22 169.0 13.8 170 163-359 21-210 (247)
204 3q72_A GTP-binding protein RAD 99.7 1.1E-17 3.6E-22 157.5 12.4 154 163-357 2-164 (166)
205 1fzq_A ADP-ribosylation factor 99.7 1.7E-17 5.9E-22 159.3 14.1 153 163-357 16-178 (181)
206 2ywe_A GTP-binding protein LEP 99.7 1.4E-17 4.7E-22 187.5 15.4 160 371-549 6-183 (600)
207 2h17_A ADP-ribosylation factor 99.7 1.2E-17 4.3E-22 160.1 12.8 150 163-354 21-180 (181)
208 2efe_B Small GTP-binding prote 99.7 2.9E-17 9.9E-22 156.8 15.1 156 164-358 13-176 (181)
209 1u8z_A RAS-related protein RAL 99.7 3E-17 1E-21 154.2 15.0 153 164-356 5-166 (168)
210 1z2a_A RAS-related protein RAB 99.7 2.6E-17 8.8E-22 154.9 14.6 155 163-356 5-166 (168)
211 2nzj_A GTP-binding protein REM 99.7 1.2E-17 4.2E-22 158.4 12.4 158 163-358 4-170 (175)
212 2cxx_A Probable GTP-binding pr 99.7 7.5E-17 2.6E-21 155.2 18.0 166 164-359 2-186 (190)
213 1zo1_I IF2, translation initia 99.7 1.2E-18 4.1E-23 192.1 6.0 159 370-546 3-163 (501)
214 3clv_A RAB5 protein, putative; 99.7 2.9E-17 1E-21 159.5 15.2 155 163-357 7-204 (208)
215 3bc1_A RAS-related protein RAB 99.7 2.8E-17 9.6E-22 158.5 14.9 156 163-357 11-185 (195)
216 1f6b_A SAR1; gtpases, N-termin 99.7 1.4E-17 4.8E-22 162.5 12.7 151 163-355 25-197 (198)
217 4bas_A ADP-ribosylation factor 99.7 2.9E-17 1E-21 159.4 14.8 158 162-359 16-191 (199)
218 1ek0_A Protein (GTP-binding pr 99.7 2.5E-17 8.5E-22 155.2 13.9 154 164-356 4-168 (170)
219 1ksh_A ARF-like protein 2; sma 99.7 2.2E-17 7.4E-22 158.8 13.6 153 163-357 18-180 (186)
220 3q85_A GTP-binding protein REM 99.7 2.8E-17 9.6E-22 155.1 14.1 157 163-357 2-167 (169)
221 1kk1_A EIF2gamma; initiation o 99.7 5.8E-17 2E-21 176.4 18.5 162 370-548 9-198 (410)
222 3izq_1 HBS1P, elongation facto 99.7 5.1E-18 1.7E-22 192.7 10.3 147 161-347 165-362 (611)
223 2bcg_Y Protein YP2, GTP-bindin 99.7 3.9E-17 1.4E-21 159.9 15.2 158 163-359 8-173 (206)
224 1kao_A RAP2A; GTP-binding prot 99.7 3.4E-17 1.2E-21 153.6 14.1 153 164-356 4-165 (167)
225 2bov_A RAla, RAS-related prote 99.7 5.4E-17 1.8E-21 158.5 15.9 155 163-357 14-177 (206)
226 1z0f_A RAB14, member RAS oncog 99.7 4.6E-17 1.6E-21 154.8 15.1 155 163-356 15-177 (179)
227 2fn4_A P23, RAS-related protei 99.7 3.9E-17 1.3E-21 155.7 14.5 157 163-359 9-174 (181)
228 3avx_A Elongation factor TS, e 99.7 2.2E-17 7.6E-22 193.7 15.1 161 370-547 295-483 (1289)
229 2fg5_A RAB-22B, RAS-related pr 99.7 3.4E-17 1.2E-21 158.7 13.9 157 163-357 23-186 (192)
230 4dsu_A GTPase KRAS, isoform 2B 99.7 5.7E-17 2E-21 155.8 15.4 155 164-358 5-167 (189)
231 3reg_A RHO-like small GTPase; 99.7 3.8E-17 1.3E-21 158.4 14.2 155 163-357 23-188 (194)
232 2j69_A Bacterial dynamin-like 99.7 1.7E-17 5.9E-22 191.4 13.8 170 370-550 68-325 (695)
233 3j2k_7 ERF3, eukaryotic polype 99.7 4.3E-17 1.5E-21 178.6 16.3 149 161-349 15-217 (439)
234 1zd9_A ADP-ribosylation factor 99.7 4.3E-17 1.5E-21 157.4 14.4 154 163-357 22-185 (188)
235 2q3h_A RAS homolog gene family 99.7 3.9E-17 1.3E-21 159.2 14.2 156 163-358 20-196 (201)
236 2hxs_A RAB-26, RAS-related pro 99.7 1.5E-17 5.1E-22 158.4 10.9 157 163-358 6-174 (178)
237 2a9k_A RAS-related protein RAL 99.7 6.8E-17 2.3E-21 154.8 15.6 155 163-357 18-181 (187)
238 1m2o_B GTP-binding protein SAR 99.7 3.6E-17 1.2E-21 158.5 13.6 150 163-354 23-189 (190)
239 3dpu_A RAB family protein; roc 99.7 2.5E-17 8.4E-22 185.5 14.3 186 341-551 13-209 (535)
240 3c5h_A Glucocorticoid receptor 99.7 1.2E-17 4E-22 170.0 10.6 168 369-548 17-253 (255)
241 3kkq_A RAS-related protein M-R 99.7 7.8E-17 2.7E-21 154.4 15.8 154 163-356 18-181 (183)
242 2gf9_A RAS-related protein RAB 99.7 4.7E-17 1.6E-21 157.1 14.2 156 163-357 22-185 (189)
243 2hup_A RAS-related protein RAB 99.7 5.6E-17 1.9E-21 158.6 14.9 157 163-358 29-194 (201)
244 1moz_A ARL1, ADP-ribosylation 99.7 4.5E-17 1.5E-21 155.9 13.8 153 163-357 18-180 (183)
245 2bme_A RAB4A, RAS-related prot 99.7 3.8E-17 1.3E-21 156.9 13.2 156 163-357 10-173 (186)
246 2j0v_A RAC-like GTP-binding pr 99.7 2.2E-17 7.5E-22 162.5 11.8 156 163-358 9-181 (212)
247 2a5j_A RAS-related protein RAB 99.7 6.3E-17 2.2E-21 156.6 14.9 156 163-357 21-184 (191)
248 1z08_A RAS-related protein RAB 99.7 2.2E-17 7.4E-22 155.9 11.3 154 164-356 7-168 (170)
249 1c1y_A RAS-related protein RAP 99.7 5.5E-17 1.9E-21 152.5 14.1 153 164-356 4-166 (167)
250 1s0u_A EIF-2-gamma, translatio 99.7 7.3E-17 2.5E-21 175.4 16.9 162 370-548 7-196 (408)
251 2fu5_C RAS-related protein RAB 99.7 1E-17 3.6E-22 160.5 9.0 157 163-358 8-172 (183)
252 2x77_A ADP-ribosylation factor 99.7 3.5E-17 1.2E-21 157.9 12.7 153 163-357 22-184 (189)
253 2atx_A Small GTP binding prote 99.7 6.1E-17 2.1E-21 156.9 14.5 154 163-356 18-192 (194)
254 2b6h_A ADP-ribosylation factor 99.7 7E-17 2.4E-21 156.7 14.9 153 162-356 28-190 (192)
255 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.1E-17 2.4E-21 153.5 14.5 156 163-357 7-174 (177)
256 1zbd_A Rabphilin-3A; G protein 99.7 7.8E-17 2.7E-21 157.3 15.1 156 163-357 8-171 (203)
257 2o52_A RAS-related protein RAB 99.7 4.4E-17 1.5E-21 159.1 13.2 156 163-357 25-188 (200)
258 2ew1_A RAS-related protein RAB 99.7 5.1E-17 1.7E-21 159.1 13.6 156 163-357 26-189 (201)
259 3cnl_A YLQF, putative uncharac 99.7 3.7E-18 1.3E-22 174.0 5.6 143 264-433 13-157 (262)
260 3gj0_A GTP-binding nuclear pro 99.7 1.6E-17 5.5E-22 164.7 10.0 158 163-358 15-176 (221)
261 3izy_P Translation initiation 99.7 1.9E-18 6.5E-23 192.0 3.6 184 163-387 4-210 (537)
262 1mh1_A RAC1; GTP-binding, GTPa 99.7 4.9E-17 1.7E-21 155.8 13.1 154 164-357 6-180 (186)
263 4gzl_A RAS-related C3 botulinu 99.7 3.5E-17 1.2E-21 160.4 12.3 152 163-354 30-202 (204)
264 1vg8_A RAS-related protein RAB 99.7 7.6E-17 2.6E-21 157.7 14.4 157 163-358 8-176 (207)
265 3cbq_A GTP-binding protein REM 99.7 6.5E-17 2.2E-21 157.4 13.7 159 162-358 22-189 (195)
266 1z06_A RAS-related protein RAB 99.7 7.5E-17 2.6E-21 155.7 13.9 156 163-356 20-187 (189)
267 1wb1_A Translation elongation 99.7 5.2E-17 1.8E-21 179.8 14.4 155 163-357 19-189 (482)
268 1ky3_A GTP-binding protein YPT 99.7 4.8E-17 1.6E-21 155.2 12.3 156 163-357 8-178 (182)
269 3cb4_D GTP-binding protein LEP 99.7 4.6E-17 1.6E-21 183.6 14.1 185 163-393 4-215 (599)
270 3t1o_A Gliding protein MGLA; G 99.7 4.9E-17 1.7E-21 157.3 12.4 158 163-358 14-193 (198)
271 3mca_A HBS1, elongation factor 99.7 1.8E-18 6E-23 196.0 2.3 156 161-356 175-396 (592)
272 2f7s_A C25KG, RAS-related prot 99.7 6.4E-17 2.2E-21 159.7 13.2 154 163-357 25-199 (217)
273 2erx_A GTP-binding protein DI- 99.7 7E-17 2.4E-21 152.4 12.8 154 164-357 4-167 (172)
274 2oil_A CATX-8, RAS-related pro 99.7 1.3E-16 4.5E-21 154.4 15.0 156 163-357 25-188 (193)
275 2p5s_A RAS and EF-hand domain 99.7 5.3E-17 1.8E-21 158.3 12.0 155 162-356 27-196 (199)
276 2ce2_X GTPase HRAS; signaling 99.7 4E-16 1.4E-20 145.9 17.6 153 164-356 4-164 (166)
277 3con_A GTPase NRAS; structural 99.7 1.7E-16 5.8E-21 153.1 15.4 155 164-358 22-184 (190)
278 3bwd_D RAC-like GTP-binding pr 99.7 2.7E-17 9.1E-22 157.2 9.4 154 163-356 8-180 (182)
279 2f9l_A RAB11B, member RAS onco 99.7 1.5E-16 5.2E-21 155.1 14.9 157 371-549 5-167 (199)
280 3dz8_A RAS-related protein RAB 99.7 3E-17 1E-21 158.9 9.6 158 163-358 23-187 (191)
281 3lxx_A GTPase IMAP family memb 99.7 9.3E-17 3.2E-21 161.6 13.5 168 162-358 28-215 (239)
282 2j1l_A RHO-related GTP-binding 99.7 1.1E-16 3.9E-21 158.0 13.8 155 163-357 34-209 (214)
283 4dkx_A RAS-related protein RAB 99.7 9.1E-17 3.1E-21 159.1 12.9 156 164-358 14-177 (216)
284 2h5e_A Peptide chain release f 99.7 9.6E-17 3.3E-21 179.2 14.7 117 370-501 12-149 (529)
285 1r5b_A Eukaryotic peptide chai 99.7 1.3E-17 4.5E-22 184.1 7.2 156 371-541 43-243 (467)
286 2gco_A H9, RHO-related GTP-bin 99.7 1.6E-16 5.3E-21 155.3 14.0 152 164-355 26-198 (201)
287 3cpj_B GTP-binding protein YPT 99.7 1.1E-16 3.7E-21 159.2 12.9 157 163-358 13-177 (223)
288 3r7w_B Gtpase2, GTP-binding pr 99.7 1.2E-16 4E-21 166.0 13.1 159 373-546 1-170 (331)
289 4djt_A GTP-binding nuclear pro 99.7 7.5E-17 2.5E-21 159.4 11.0 157 163-359 11-177 (218)
290 3tr5_A RF-3, peptide chain rel 99.7 5.5E-17 1.9E-21 181.0 11.2 116 163-318 13-149 (528)
291 3q3j_B RHO-related GTP-binding 99.7 1.2E-16 4.2E-21 157.9 12.5 156 162-357 26-203 (214)
292 2fv8_A H6, RHO-related GTP-bin 99.7 1.8E-16 6.1E-21 155.6 13.6 153 164-356 26-199 (207)
293 3vqt_A RF-3, peptide chain rel 99.7 2.5E-16 8.6E-21 176.6 16.5 118 369-501 29-167 (548)
294 3llu_A RAS-related GTP-binding 99.7 3.6E-16 1.2E-20 152.0 15.6 157 161-355 18-195 (196)
295 3def_A T7I23.11 protein; chlor 99.7 5.4E-16 1.9E-20 158.3 17.5 124 370-501 35-166 (262)
296 3oes_A GTPase rhebl1; small GT 99.7 8.4E-17 2.9E-21 157.1 10.6 157 163-359 24-189 (201)
297 2fh5_B SR-beta, signal recogni 99.7 3.6E-16 1.2E-20 154.0 15.0 150 163-354 7-213 (214)
298 2xex_A Elongation factor G; GT 99.7 3.2E-16 1.1E-20 180.7 16.6 117 370-501 9-142 (693)
299 2yc2_C IFT27, small RAB-relate 99.7 4.9E-17 1.7E-21 158.9 8.5 157 163-357 20-192 (208)
300 1zo1_I IF2, translation initia 99.7 7.7E-18 2.6E-22 185.7 2.7 152 162-354 3-164 (501)
301 3l0i_B RAS-related protein RAB 99.7 1.3E-17 4.4E-22 162.7 4.0 156 163-357 33-196 (199)
302 1pui_A ENGB, probable GTP-bind 99.7 6.8E-16 2.3E-20 151.4 16.4 169 371-549 26-198 (210)
303 2iwr_A Centaurin gamma 1; ANK 99.7 5.2E-16 1.8E-20 147.9 15.0 148 164-357 8-169 (178)
304 2gf0_A GTP-binding protein DI- 99.7 2.8E-16 9.7E-21 152.4 13.4 156 163-358 8-172 (199)
305 1kk1_A EIF2gamma; initiation o 99.7 4E-16 1.4E-20 169.7 16.0 157 163-358 10-201 (410)
306 3sjy_A Translation initiation 99.7 4.6E-16 1.6E-20 168.8 16.3 158 162-358 7-193 (403)
307 1oix_A RAS-related protein RAB 99.7 6.3E-16 2.2E-20 149.9 14.8 156 370-547 28-189 (191)
308 3c5c_A RAS-like protein 12; GD 99.7 3.8E-16 1.3E-20 150.7 13.2 153 163-356 21-185 (187)
309 1wxq_A GTP-binding protein; st 99.7 6.1E-17 2.1E-21 174.6 8.4 91 372-470 1-114 (397)
310 1g7s_A Translation initiation 99.7 1.8E-16 6.2E-21 178.9 12.5 155 163-358 5-219 (594)
311 1dar_A EF-G, elongation factor 99.7 7.4E-16 2.5E-20 177.6 17.9 117 370-501 11-144 (691)
312 2atv_A RERG, RAS-like estrogen 99.7 5.9E-16 2E-20 150.4 14.5 154 163-357 28-191 (196)
313 3o47_A ADP-ribosylation factor 99.7 4.5E-16 1.5E-20 164.2 14.2 153 163-357 165-327 (329)
314 1s0u_A EIF-2-gamma, translatio 99.7 7.6E-16 2.6E-20 167.4 16.3 157 163-358 8-199 (408)
315 2rdo_7 EF-G, elongation factor 99.7 1.9E-15 6.5E-20 174.5 20.2 117 370-501 9-149 (704)
316 2aka_B Dynamin-1; fusion prote 99.7 5.8E-16 2E-20 160.8 14.3 167 161-356 24-252 (299)
317 2elf_A Protein translation elo 99.7 5.2E-16 1.8E-20 166.0 14.2 143 165-358 23-181 (370)
318 2cjw_A GTP-binding protein GEM 99.7 8.6E-16 2.9E-20 149.1 14.3 158 163-357 6-172 (192)
319 1nrj_B SR-beta, signal recogni 99.7 1.4E-16 4.9E-21 157.3 8.9 145 369-536 10-170 (218)
320 3r7w_A Gtpase1, GTP-binding pr 99.7 9.5E-16 3.2E-20 160.2 15.5 158 164-355 4-179 (307)
321 1h65_A Chloroplast outer envel 99.7 1.1E-15 3.8E-20 156.7 15.7 125 370-502 38-170 (270)
322 3ihw_A Centg3; RAS, centaurin, 99.7 1.7E-15 5.7E-20 146.0 16.0 149 163-357 20-180 (184)
323 2ywe_A GTP-binding protein LEP 99.6 9.2E-16 3.1E-20 172.6 16.1 157 163-359 6-186 (600)
324 2g3y_A GTP-binding protein GEM 99.6 7.9E-16 2.7E-20 151.8 13.7 158 163-357 37-203 (211)
325 3lvq_E ARF-GAP with SH3 domain 99.6 6.8E-16 2.3E-20 172.2 14.6 154 164-359 323-486 (497)
326 3p26_A Elongation factor 1 alp 99.6 4.9E-16 1.7E-20 172.5 13.2 145 163-346 33-227 (483)
327 1jwy_B Dynamin A GTPase domain 99.6 8.5E-16 2.9E-20 160.9 14.2 170 161-357 22-262 (315)
328 1m7b_A RND3/RHOE small GTP-bin 99.6 5.2E-16 1.8E-20 149.1 11.5 153 163-355 7-181 (184)
329 3t34_A Dynamin-related protein 99.6 6.2E-16 2.1E-20 165.3 13.2 167 370-544 33-255 (360)
330 2c78_A Elongation factor TU-A; 99.6 3.9E-16 1.3E-20 169.5 11.3 155 163-357 11-212 (405)
331 2dy1_A Elongation factor G; tr 99.6 3E-15 1E-19 171.9 18.7 114 371-499 9-139 (665)
332 1zun_B Sulfate adenylate trans 99.6 1.1E-15 3.9E-20 167.3 14.4 145 163-347 24-214 (434)
333 2qm8_A GTPase/ATPase; G protei 99.6 4.1E-17 1.4E-21 172.5 2.5 203 371-598 55-319 (337)
334 1gwn_A RHO-related GTP-binding 99.6 9.2E-16 3.2E-20 150.6 11.4 153 163-355 28-202 (205)
335 3th5_A RAS-related C3 botulinu 99.4 2.9E-17 1E-21 160.7 0.0 153 162-354 29-202 (204)
336 2zej_A Dardarin, leucine-rich 99.6 1.5E-15 5.2E-20 146.0 11.8 156 164-357 3-178 (184)
337 3j25_A Tetracycline resistance 99.6 5.6E-16 1.9E-20 177.2 10.1 164 371-549 2-238 (638)
338 1d2e_A Elongation factor TU (E 99.6 1.2E-15 4.2E-20 165.1 12.2 155 164-358 4-196 (397)
339 1wxq_A GTP-binding protein; st 99.6 6.3E-17 2.2E-21 174.5 1.8 89 165-285 2-114 (397)
340 2wkq_A NPH1-1, RAS-related C3 99.6 1.8E-15 6.3E-20 159.1 12.7 154 163-356 155-329 (332)
341 2qag_A Septin-2, protein NEDD5 99.6 2.4E-15 8.4E-20 160.4 12.8 173 369-548 35-231 (361)
342 2www_A Methylmalonic aciduria 99.6 2.7E-15 9.2E-20 159.4 10.1 157 370-550 73-279 (349)
343 2ged_A SR-beta, signal recogni 99.6 1.3E-14 4.4E-19 140.1 14.0 142 339-503 21-173 (193)
344 2h5e_A Peptide chain release f 99.6 1.5E-14 5.3E-19 161.4 16.1 115 164-318 14-149 (529)
345 1h65_A Chloroplast outer envel 99.6 1.7E-14 5.7E-19 147.9 14.9 125 163-318 39-169 (270)
346 4a9a_A Ribosome-interacting GT 99.6 1.4E-14 4.9E-19 153.9 14.5 122 367-499 68-195 (376)
347 3def_A T7I23.11 protein; chlor 99.6 2.2E-14 7.6E-19 146.3 15.0 124 163-317 36-165 (262)
348 2xex_A Elongation factor G; GT 99.6 1.3E-14 4.5E-19 167.3 14.9 116 163-318 10-142 (693)
349 3vqt_A RF-3, peptide chain rel 99.6 1.8E-14 6.1E-19 161.6 15.2 113 165-317 33-166 (548)
350 2j69_A Bacterial dynamin-like 99.6 2.9E-15 1E-19 172.8 9.1 158 163-357 69-325 (695)
351 1pui_A ENGB, probable GTP-bind 99.6 3.2E-14 1.1E-18 139.4 14.7 165 163-357 26-199 (210)
352 1f60_A Elongation factor EEF1A 99.6 2.1E-15 7.2E-20 166.1 6.8 144 164-347 8-202 (458)
353 3dpu_A RAB family protein; roc 99.6 1.1E-14 3.7E-19 163.8 12.5 155 163-358 41-209 (535)
354 3zvr_A Dynamin-1; hydrolase, D 99.6 1.5E-14 5.1E-19 165.7 13.4 162 162-353 50-274 (772)
355 3avx_A Elongation factor TS, e 99.5 9.7E-15 3.3E-19 171.5 12.0 155 163-357 296-486 (1289)
356 1udx_A The GTP-binding protein 99.5 2.9E-14 1E-18 154.0 14.8 164 371-551 157-326 (416)
357 1dar_A EF-G, elongation factor 99.5 3.2E-14 1.1E-18 164.0 16.1 116 163-318 12-144 (691)
358 3p32_A Probable GTPase RV1496/ 99.5 9.1E-15 3.1E-19 155.8 10.6 155 370-550 78-284 (355)
359 2www_A Methylmalonic aciduria 99.5 1.1E-14 3.6E-19 154.8 10.8 150 161-357 72-279 (349)
360 2f9l_A RAB11B, member RAS onco 99.5 6.1E-14 2.1E-18 136.5 15.2 155 164-357 6-168 (199)
361 1jny_A EF-1-alpha, elongation 99.5 6.7E-15 2.3E-19 161.2 9.0 144 163-346 6-202 (435)
362 2x2e_A Dynamin-1; nitration, h 99.5 1.4E-14 5E-19 154.2 11.1 163 162-353 30-254 (353)
363 4fn5_A EF-G 1, elongation fact 99.5 6.9E-14 2.4E-18 162.0 17.6 117 370-500 12-151 (709)
364 2rdo_7 EF-G, elongation factor 99.5 7.9E-14 2.7E-18 160.9 17.4 116 162-317 9-148 (704)
365 1n0u_A EF-2, elongation factor 99.5 1.1E-14 3.7E-19 171.4 10.3 153 371-537 19-220 (842)
366 2qag_A Septin-2, protein NEDD5 99.5 3.5E-14 1.2E-18 151.5 12.6 165 164-356 38-232 (361)
367 1r5b_A Eukaryotic peptide chai 99.5 9.7E-15 3.3E-19 161.1 8.4 146 163-348 43-243 (467)
368 1jal_A YCHF protein; nucleotid 99.5 4E-14 1.4E-18 149.7 12.7 90 372-469 3-108 (363)
369 1udx_A The GTP-binding protein 99.5 1.2E-13 4E-18 149.3 16.3 164 163-359 157-327 (416)
370 2dby_A GTP-binding protein; GD 99.5 4.2E-14 1.4E-18 150.5 12.2 184 372-569 2-280 (368)
371 2dy1_A Elongation factor G; tr 99.5 1.9E-13 6.5E-18 157.0 16.9 114 163-316 9-139 (665)
372 2p67_A LAO/AO transport system 99.5 4E-14 1.4E-18 150.0 10.0 156 370-549 55-260 (341)
373 1oix_A RAS-related protein RAB 99.5 2.4E-13 8.2E-18 131.6 14.3 154 163-355 29-190 (191)
374 1jal_A YCHF protein; nucleotid 99.5 1.1E-13 3.8E-18 146.3 12.7 90 163-284 2-108 (363)
375 1nrj_B SR-beta, signal recogni 99.5 6.7E-14 2.3E-18 138.1 10.0 142 161-343 10-170 (218)
376 2wsm_A Hydrogenase expression/ 99.5 5.8E-14 2E-18 138.9 9.3 156 370-550 29-214 (221)
377 3c5h_A Glucocorticoid receptor 99.5 5.4E-14 1.9E-18 142.8 8.6 85 272-356 162-254 (255)
378 3p32_A Probable GTPase RV1496/ 99.5 2.3E-14 7.8E-19 152.8 5.9 148 162-357 78-284 (355)
379 3j25_A Tetracycline resistance 99.5 4.3E-14 1.5E-18 161.7 8.3 156 164-359 3-241 (638)
380 1u0l_A Probable GTPase ENGC; p 99.5 2.7E-13 9.3E-18 141.0 13.5 142 268-433 80-234 (301)
381 2qag_C Septin-7; cell cycle, c 99.5 2.1E-13 7.3E-18 147.3 13.1 170 371-546 31-223 (418)
382 1yrb_A ATP(GTP)binding protein 99.5 1.2E-13 3.9E-18 140.5 9.9 171 371-550 14-257 (262)
383 3t34_A Dynamin-related protein 99.5 2.1E-13 7.3E-18 145.6 12.0 162 162-351 33-255 (360)
384 2qnr_A Septin-2, protein NEDD5 99.4 3.9E-13 1.3E-17 139.8 13.2 173 370-549 17-213 (301)
385 2qpt_A EH domain-containing pr 99.4 2.5E-13 8.5E-18 152.5 11.6 127 369-501 63-233 (550)
386 2dby_A GTP-binding protein; GD 99.4 5E-13 1.7E-17 142.2 12.9 89 164-284 2-111 (368)
387 2yv5_A YJEQ protein; hydrolase 99.4 5.3E-13 1.8E-17 138.8 12.5 140 269-433 76-229 (302)
388 3r7w_B Gtpase2, GTP-binding pr 99.4 1.1E-12 3.8E-17 136.2 12.2 155 165-356 1-173 (331)
389 2p67_A LAO/AO transport system 99.4 2E-13 7E-18 144.5 6.8 148 162-356 55-260 (341)
390 1t9h_A YLOQ, probable GTPase E 99.4 1.3E-13 4.4E-18 142.8 4.9 142 269-434 83-238 (307)
391 2ged_A SR-beta, signal recogni 99.4 8.6E-13 3E-17 127.2 8.3 116 162-318 47-171 (193)
392 4fn5_A EF-G 1, elongation fact 99.4 3.5E-12 1.2E-16 147.7 14.8 115 163-317 13-151 (709)
393 2qpt_A EH domain-containing pr 99.3 3.4E-12 1.2E-16 143.3 13.5 129 161-318 63-233 (550)
394 2wsm_A Hydrogenase expression/ 99.3 1.8E-13 6.1E-18 135.3 1.9 148 163-357 30-214 (221)
395 2qnr_A Septin-2, protein NEDD5 99.3 9.1E-12 3.1E-16 129.4 14.1 166 163-356 18-213 (301)
396 1yrb_A ATP(GTP)binding protein 99.3 2.3E-12 7.9E-17 130.9 9.4 161 163-358 14-258 (262)
397 1n0u_A EF-2, elongation factor 99.3 2.5E-12 8.5E-17 151.3 9.1 113 164-316 20-163 (842)
398 2qag_C Septin-7; cell cycle, c 99.3 1.3E-11 4.4E-16 133.4 12.9 167 162-356 30-226 (418)
399 2qm8_A GTPase/ATPase; G protei 99.2 2.6E-12 8.7E-17 135.7 4.5 147 163-356 55-260 (337)
400 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 6.6E-11 2.3E-15 126.6 14.1 62 163-224 20-98 (392)
401 2rcn_A Probable GTPase ENGC; Y 99.2 3E-11 1E-15 127.5 10.7 140 270-433 128-281 (358)
402 2hf9_A Probable hydrogenase ni 99.2 2.4E-11 8.2E-16 120.3 9.4 155 370-550 37-224 (226)
403 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 3.2E-11 1.1E-15 129.1 9.7 92 371-469 20-127 (392)
404 2qag_B Septin-6, protein NEDD5 99.2 1.2E-10 4.1E-15 125.3 13.1 154 372-531 43-217 (427)
405 2ohf_A Protein OLA1, GTP-bindi 99.2 2.2E-11 7.6E-16 129.9 7.0 158 370-551 21-196 (396)
406 3ec1_A YQEH GTPase; atnos1, at 99.2 2.4E-12 8.1E-17 137.6 -1.3 146 164-345 163-319 (369)
407 2j37_W Signal recognition part 99.1 3.5E-11 1.2E-15 132.7 7.5 189 370-571 100-340 (504)
408 3h2y_A GTPase family protein; 99.1 2.9E-12 1E-16 136.8 -4.4 142 164-341 161-314 (368)
409 2qag_B Septin-6, protein NEDD5 99.1 6.6E-10 2.2E-14 119.6 13.3 149 163-338 42-217 (427)
410 2j37_W Signal recognition part 99.1 3.7E-10 1.2E-14 124.6 11.0 155 163-354 101-310 (504)
411 2hf9_A Probable hydrogenase ni 99.1 9.6E-11 3.3E-15 116.0 5.6 54 303-356 164-223 (226)
412 4fid_A G protein alpha subunit 99.0 2.5E-10 8.5E-15 119.6 8.5 122 412-548 154-326 (340)
413 3sop_A Neuronal-specific septi 99.0 1.5E-09 5.2E-14 110.7 14.0 145 372-521 3-172 (270)
414 1u0l_A Probable GTPase ENGC; p 99.0 9.1E-10 3.1E-14 114.3 12.3 134 386-545 32-168 (301)
415 2ohf_A Protein OLA1, GTP-bindi 99.0 2E-10 6.7E-15 122.6 7.1 90 163-284 22-128 (396)
416 1cip_A Protein (guanine nucleo 99.0 3E-10 1E-14 120.2 7.7 123 412-549 186-343 (353)
417 1tq4_A IIGP1, interferon-induc 98.9 1.1E-08 3.9E-13 110.0 16.7 169 370-551 68-254 (413)
418 1zcb_A G alpha I/13; GTP-bindi 98.9 8.9E-10 3E-14 117.0 7.3 123 412-549 194-352 (362)
419 1azs_C GS-alpha; complex (lyas 98.9 1.2E-09 4E-14 117.1 7.4 122 413-549 211-384 (402)
420 2xtz_A Guanine nucleotide-bind 98.9 1.4E-09 4.9E-14 115.0 6.5 117 419-549 182-344 (354)
421 3sop_A Neuronal-specific septi 98.8 1.1E-08 3.9E-13 104.2 11.6 129 164-319 3-156 (270)
422 1tq4_A IIGP1, interferon-induc 98.8 3E-08 1E-12 106.7 14.8 156 164-358 70-254 (413)
423 2v3c_C SRP54, signal recogniti 98.8 1.9E-10 6.6E-15 124.9 -2.9 183 371-570 99-337 (432)
424 1f5n_A Interferon-induced guan 98.8 4.9E-09 1.7E-13 117.4 7.7 104 371-484 38-147 (592)
425 3ohm_A Guanine nucleotide-bind 98.8 5.8E-09 2E-13 108.8 7.3 124 412-550 160-318 (327)
426 3dm5_A SRP54, signal recogniti 98.7 1.2E-07 4E-12 102.6 15.2 146 370-538 99-279 (443)
427 1f5n_A Interferon-induced guan 98.7 1.5E-08 5.2E-13 113.5 8.6 103 163-299 38-147 (592)
428 2v3c_C SRP54, signal recogniti 98.7 1.6E-08 5.3E-13 109.9 6.4 157 163-356 99-310 (432)
429 3dm5_A SRP54, signal recogniti 98.6 1.8E-07 6E-12 101.2 13.0 147 163-347 100-281 (443)
430 1puj_A YLQF, conserved hypothe 98.5 1.9E-07 6.5E-12 95.7 8.6 92 448-549 14-105 (282)
431 2yv5_A YJEQ protein; hydrolase 98.5 1.4E-07 4.9E-12 97.7 7.5 87 454-545 76-164 (302)
432 3cnl_A YLQF, putative uncharac 98.5 7.3E-08 2.5E-12 97.8 4.3 58 164-224 100-157 (262)
433 3kl4_A SRP54, signal recogniti 98.4 3.3E-07 1.1E-11 99.1 8.0 148 163-346 97-279 (433)
434 3kl4_A SRP54, signal recogniti 98.3 3.2E-06 1.1E-10 91.4 12.9 148 371-538 97-278 (433)
435 1cip_A Protein (guanine nucleo 98.3 4.3E-07 1.5E-11 95.9 5.5 122 198-357 180-344 (353)
436 1zcb_A G alpha I/13; GTP-bindi 98.3 4.6E-07 1.6E-11 96.1 5.7 118 201-356 191-352 (362)
437 1j8m_F SRP54, signal recogniti 98.2 1.9E-06 6.5E-11 88.9 6.8 147 164-347 99-281 (297)
438 1j8m_F SRP54, signal recogniti 98.1 1.3E-05 4.3E-10 82.7 12.1 147 371-540 98-281 (297)
439 3szr_A Interferon-induced GTP- 98.1 8.7E-06 3E-10 92.4 11.5 81 420-501 147-229 (608)
440 3szr_A Interferon-induced GTP- 98.1 1.4E-05 4.9E-10 90.6 11.9 27 161-187 43-69 (608)
441 1azs_C GS-alpha; complex (lyas 98.0 7E-06 2.4E-10 87.8 6.7 119 201-357 207-385 (402)
442 3l82_B F-box only protein 4; T 98.0 7.5E-06 2.6E-10 78.8 6.2 92 452-548 120-221 (227)
443 3q5d_A Atlastin-1; G protein, 98.0 1.8E-05 6E-10 85.8 9.7 60 163-223 67-152 (447)
444 3ohm_A Guanine nucleotide-bind 97.9 1.1E-05 3.8E-10 84.0 6.5 119 200-357 156-318 (327)
445 2xtz_A Guanine nucleotide-bind 97.9 1.1E-05 3.7E-10 85.2 5.8 109 210-356 182-344 (354)
446 2xxa_A Signal recognition part 97.8 3.9E-05 1.3E-09 83.1 8.2 119 163-318 100-255 (433)
447 3e70_C DPA, signal recognition 97.8 0.00012 4E-09 76.5 11.5 148 371-540 129-310 (328)
448 3q5d_A Atlastin-1; G protein, 97.7 0.0001 3.5E-09 79.8 10.2 103 372-484 68-195 (447)
449 3l82_B F-box only protein 4; T 97.7 5E-05 1.7E-09 73.1 6.8 98 260-357 113-223 (227)
450 3l2o_B F-box only protein 4; s 97.7 4.4E-05 1.5E-09 77.1 6.4 92 452-548 205-306 (312)
451 3e70_C DPA, signal recognition 97.7 5E-05 1.7E-09 79.3 6.7 70 272-347 241-310 (328)
452 4fid_A G protein alpha subunit 97.6 3E-05 1E-09 81.0 4.8 121 198-356 148-327 (340)
453 2xxa_A Signal recognition part 97.6 0.00031 1E-08 76.1 11.7 120 370-500 99-254 (433)
454 2yhs_A FTSY, cell division pro 97.6 0.00019 6.5E-09 78.3 10.1 69 273-347 412-480 (503)
455 1t9h_A YLOQ, probable GTPase E 97.5 6.1E-05 2.1E-09 77.7 4.6 86 454-544 83-171 (307)
456 1zu4_A FTSY; GTPase, signal re 97.4 0.00066 2.3E-08 70.5 11.4 22 164-185 106-127 (320)
457 1vma_A Cell division protein F 97.4 0.00028 9.5E-09 72.8 7.8 22 164-185 105-126 (306)
458 2px0_A Flagellar biosynthesis 97.3 0.0004 1.4E-08 71.4 8.5 23 163-185 105-127 (296)
459 1rj9_A FTSY, signal recognitio 97.3 0.0002 6.8E-09 73.9 6.1 23 163-185 102-124 (304)
460 2rcn_A Probable GTPase ENGC; Y 97.3 0.00058 2E-08 71.8 8.9 84 455-544 128-213 (358)
461 2yhs_A FTSY, cell division pro 97.2 0.0016 5.6E-08 70.9 12.0 148 371-540 293-480 (503)
462 2ffh_A Protein (FFH); SRP54, s 97.2 0.00052 1.8E-08 73.9 7.9 22 164-185 99-120 (425)
463 3l2o_B F-box only protein 4; s 97.2 0.00062 2.1E-08 68.7 7.2 95 262-357 200-308 (312)
464 1vma_A Cell division protein F 97.1 0.00097 3.3E-08 68.8 8.6 100 419-539 186-290 (306)
465 4dzz_A Plasmid partitioning pr 97.1 0.002 7E-08 61.7 10.4 50 267-317 92-144 (206)
466 1zu4_A FTSY; GTPase, signal re 97.0 0.0025 8.7E-08 66.1 11.0 23 371-393 105-127 (320)
467 1rj9_A FTSY, signal recognitio 97.0 0.0013 4.4E-08 67.8 8.4 147 371-539 102-288 (304)
468 2ffh_A Protein (FFH); SRP54, s 96.8 0.0023 7.7E-08 68.9 8.1 101 418-540 179-279 (425)
469 2px0_A Flagellar biosynthesis 96.7 0.0011 3.7E-08 68.1 4.9 23 371-393 105-127 (296)
470 2og2_A Putative signal recogni 96.7 0.006 2.1E-07 64.2 10.6 22 165-186 159-180 (359)
471 1ls1_A Signal recognition part 96.7 0.0025 8.7E-08 65.3 7.2 22 164-185 99-120 (295)
472 3ney_A 55 kDa erythrocyte memb 96.6 0.00049 1.7E-08 66.2 1.0 59 163-223 19-78 (197)
473 4dzz_A Plasmid partitioning pr 96.5 0.021 7.1E-07 54.4 12.4 64 419-499 75-143 (206)
474 2og2_A Putative signal recogni 96.4 0.0095 3.2E-07 62.6 9.8 23 371-393 157-179 (359)
475 3ney_A 55 kDa erythrocyte memb 96.4 0.0005 1.7E-08 66.1 -0.4 57 372-431 20-77 (197)
476 3cwq_A Para family chromosome 96.3 0.0051 1.8E-07 59.5 6.4 49 268-317 86-134 (209)
477 3b9q_A Chloroplast SRP recepto 96.2 0.01 3.6E-07 60.9 8.7 23 371-393 100-122 (302)
478 3b9q_A Chloroplast SRP recepto 96.1 0.0099 3.4E-07 61.1 7.9 23 164-186 101-123 (302)
479 1ls1_A Signal recognition part 96.1 0.0089 3.1E-07 61.2 7.4 99 419-539 180-278 (295)
480 4ido_A Atlastin-1; GTPase, GTP 96.0 0.04 1.4E-06 59.3 12.2 22 163-184 67-88 (457)
481 4ido_A Atlastin-1; GTPase, GTP 95.9 0.033 1.1E-06 60.0 10.8 104 371-484 67-195 (457)
482 3cwq_A Para family chromosome 95.8 0.012 4E-07 57.0 6.5 66 418-499 66-133 (209)
483 1bif_A 6-phosphofructo-2-kinas 95.8 0.0021 7.1E-08 70.5 1.2 113 371-493 39-156 (469)
484 3end_A Light-independent proto 95.6 0.022 7.7E-07 58.3 7.8 66 418-498 155-225 (307)
485 3cf2_A TER ATPase, transitiona 95.5 0.16 5.4E-06 58.9 15.1 24 372-395 512-535 (806)
486 3end_A Light-independent proto 95.3 0.03 1E-06 57.4 7.8 47 269-315 176-225 (307)
487 1ko7_A HPR kinase/phosphatase; 95.1 0.015 5.1E-07 59.7 4.5 89 303-395 80-168 (314)
488 3kjh_A CO dehydrogenase/acetyl 94.9 0.012 4.2E-07 57.9 3.3 109 165-314 2-194 (254)
489 1ye8_A Protein THEP1, hypothet 94.9 0.012 4.3E-07 55.3 2.9 23 165-187 2-24 (178)
490 1ex7_A Guanylate kinase; subst 94.8 0.0066 2.2E-07 57.7 1.0 51 373-426 3-54 (186)
491 1kgd_A CASK, peripheral plasma 94.7 0.011 3.7E-07 55.6 2.0 38 372-409 6-44 (180)
492 1kgd_A CASK, peripheral plasma 94.6 0.016 5.5E-07 54.4 2.9 23 164-186 6-28 (180)
493 1lvg_A Guanylate kinase, GMP k 94.5 0.015 5.1E-07 55.6 2.7 22 165-186 6-27 (198)
494 3q9l_A Septum site-determining 94.5 0.082 2.8E-06 52.3 8.0 111 162-314 1-184 (260)
495 1znw_A Guanylate kinase, GMP k 94.3 0.019 6.6E-07 55.2 2.9 23 165-187 22-44 (207)
496 1ihu_A Arsenical pump-driving 94.1 0.12 3.9E-06 58.2 9.3 20 164-183 9-28 (589)
497 3c8u_A Fructokinase; YP_612366 94.1 0.047 1.6E-06 52.4 5.3 41 345-394 5-45 (208)
498 1np6_A Molybdopterin-guanine d 94.1 0.028 9.4E-07 52.7 3.4 25 162-186 5-29 (174)
499 3ea0_A ATPase, para family; al 94.0 0.064 2.2E-06 52.5 6.1 50 268-317 136-186 (245)
500 1zp6_A Hypothetical protein AT 94.0 0.028 9.7E-07 52.8 3.2 22 165-186 11-32 (191)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=3.5e-75 Score=641.39 Aligned_cols=432 Identities=44% Similarity=0.757 Sum_probs=350.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+|+|+||||||||+|+|++...+.+.+.+|+|++..++.+.+++..+.+|||||+.....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---------------- 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---------------- 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch----------------
Confidence 4789999999999999999999998888999999999999999999999999999999974211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
.+...+..++..++..||++|||+|++.+++..+.++.+++++ .++|+++|+||+|+..... .
T Consensus 67 --------------~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~-~ 129 (436)
T 2hjg_A 67 --------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-N 129 (436)
T ss_dssp --------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC------C
T ss_pred --------------hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh-h
Confidence 1223456777889999999999999999999999999998877 5899999999999875421 2
Q ss_pred HHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccC
Q 005979 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (666)
Q Consensus 323 ~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~ 401 (666)
..+++.+|+ .++++||.+|.|+.+|++.|.+.+++.... ......++|+++|+||||||||+|+|++..+..+++
T Consensus 130 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~----~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~ 205 (436)
T 2hjg_A 130 IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 205 (436)
T ss_dssp CCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS----CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-
T ss_pred HHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc----cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecC
Confidence 234556777 799999999999999999999988753211 112346899999999999999999999998888999
Q ss_pred CCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHH
Q 005979 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (666)
Q Consensus 402 ~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~ 481 (666)
++|||++.+...+.. ++..+.||||||+.++..+. ..++.+...++..+++.||++|+|+|++++.+.++..|+..
T Consensus 206 ~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~ 281 (436)
T 2hjg_A 206 VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGY 281 (436)
T ss_dssp --------CCEEEEE-TTEEEEETTHHHHTCBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCceeeeeEEEEEE-CCeEEEEEECCCcCcCcccc---chHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHH
Confidence 999999998888875 78899999999998876543 34577878888889999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHH
Q 005979 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (666)
Q Consensus 482 i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln 561 (666)
+.+.++|+|+|+||||+.+... ...+++.+.+.+.+....++|++++||++|.|++++|+.+.+.+.++..+++|+.||
T Consensus 282 ~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln 360 (436)
T 2hjg_A 282 AHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLN 360 (436)
T ss_dssp HHHTTCEEEEEEECGGGSCCCT-THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHcCCcEEEEEECccCCCcch-HHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999999999999999986443 223445666777888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEec
Q 005979 562 QVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSR 637 (666)
Q Consensus 562 ~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~ 637 (666)
+++.+++..+|||.. +|+++|++|+||+.++||+||+|||+++.++++|+|||+|+||++|||.|+||+|.||++
T Consensus 361 ~~l~~~~~~~~pp~~-~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 435 (436)
T 2hjg_A 361 DVIMDAVAMNPTPTH-NGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 435 (436)
T ss_dssp HHHHHHHHHSCCCEE-TTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEEC
T ss_pred HHHHHHHHhCCCCcc-CCcceeEEeEecCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEecC
Confidence 999999999998864 689999999999999999999999999999999999999999999999999999999965
No 2
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=4.6e-72 Score=617.07 Aligned_cols=435 Identities=36% Similarity=0.622 Sum_probs=346.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
|+|+|||+||||||||+|+|++.+.+++++.+|+|++...+.+.|++..+.+|||||+..... .
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~-------------- 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--D-------------- 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG--G--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--c--------------
Confidence 689999999999999999999998788999999999999999999999999999999974211 1
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
.+...+..++..+++.||++|||+|++.+++..+..+.+++++ .++|+++|+||+|+........
T Consensus 66 -------------~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~ 130 (439)
T 1mky_A 66 -------------IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREV 130 (439)
T ss_dssp -------------CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHT
T ss_pred -------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHH
Confidence 1223456778889999999999999999999999999999987 4899999999999864312223
Q ss_pred -HHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccC
Q 005979 324 -SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (666)
Q Consensus 324 -~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~ 401 (666)
.+++.+|+ .++++||.||.|+.+|++.|.+.+++..............++|+++|+||||||||+|+|+|.....+++
T Consensus 131 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~ 210 (439)
T 1mky_A 131 KPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP 210 (439)
T ss_dssp HHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECC
T ss_pred HHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCC
Confidence 56677888 7999999999999999999999887543110000012346899999999999999999999998888999
Q ss_pred CCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHH
Q 005979 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (666)
Q Consensus 402 ~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~ 481 (666)
.+|+|++.....+.. +|..+.+|||||+.++..+.. ...+.+...++..+++.+|++++|+|++++.+.++..+...
T Consensus 211 ~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~--~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~ 287 (439)
T 1mky_A 211 IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEP--RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGL 287 (439)
T ss_dssp CC------CCEEEEE-TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCCcCCceEEEEEE-CCEEEEEEECCCCccccccch--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999888875 788999999999976544321 11233344556778999999999999999999999888888
Q ss_pred HHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHH
Q 005979 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (666)
Q Consensus 482 i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln 561 (666)
+...++|+++|+||||+.+.+. ...+++.+.+.+.+....++|++++||++|.|+++||+.+.+.+.++..+++|+.||
T Consensus 288 l~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln 366 (439)
T 1mky_A 288 MERRGRASVVVFNKWDLVVHRE-KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAIN 366 (439)
T ss_dssp HHHTTCEEEEEEECGGGSTTGG-GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHcCCCEEEEEECccCCCchh-hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHH
Confidence 8889999999999999976432 223445556667777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHh-hcCCCCccEEEEEEecC
Q 005979 562 QVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRA-DAGFSGTPIRLLWRSRR 638 (666)
Q Consensus 562 ~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~-~~~~~g~pi~~~~~~~~ 638 (666)
+++++++..+||| |+.|++|+||+.++||+||+|+|+|+.++++|+|||+|+||+ .|+|.|+||++.||+++
T Consensus 367 ~~l~~~~~~~~~~-----~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~~~ 439 (439)
T 1mky_A 367 SALQKVLAFTNLP-----RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR 439 (439)
T ss_dssp HHHHHHHTTCCCS-----TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEECC
T ss_pred HHHHHHHHcCCCC-----CCcEEEEEEecCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 9999999988887 778999999999999999999999999999999999999999 99999999999999653
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=8.9e-73 Score=625.70 Aligned_cols=434 Identities=44% Similarity=0.747 Sum_probs=355.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
...++|+|+|++|||||||+|+|+|.+.+.+.+.+|+|++...+.+.+.+..+.+|||||+.... .
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~---~----------- 86 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD---E----------- 86 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC--------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc---h-----------
Confidence 34689999999999999999999999888899999999999999999999999999999986311 1
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
.+...+..++..++..+|++|||+|+..+++..+.++.+++++ .++|+++|+||+|+....
T Consensus 87 ----------------~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~- 147 (456)
T 4dcu_A 87 ----------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR- 147 (456)
T ss_dssp ----------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-------
T ss_pred ----------------HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh-
Confidence 1234456778889999999999999999999999999999987 689999999999987532
Q ss_pred hhHHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccc
Q 005979 321 MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIV 399 (666)
Q Consensus 321 ~~~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~ 399 (666)
....+++.+++ .++++||.+|.|+.+|++.+.+.++.... .......++|+++|.+|||||||+|+|++..+..+
T Consensus 148 ~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~----~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~ 223 (456)
T 4dcu_A 148 ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE----TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV 223 (456)
T ss_dssp ---CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS----SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE
T ss_pred hhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccc----cccccccceeEEecCCCCCHHHHHHHHhCCCcccc
Confidence 22334566777 67899999999999999999988764321 11223468999999999999999999999888889
Q ss_pred cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHH
Q 005979 400 SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA 479 (666)
Q Consensus 400 ~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~ 479 (666)
++++|||++.....+.. ++..+.||||||+.+...+. ...+.+...++..+++.||++|+|+|++++++.++..++
T Consensus 224 ~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~ 299 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 299 (456)
T ss_dssp CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccc---hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHH
Confidence 99999999998888875 78899999999998765543 345777788888899999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchh
Q 005979 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTAT 559 (666)
Q Consensus 480 ~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ 559 (666)
.++.+.++|+|+|+||||+.+.+. ...+++.+.+.+.+....++|+++|||++|.|+++||+.|.+.+.++..+++|+.
T Consensus 300 ~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ 378 (456)
T 4dcu_A 300 GYAHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNV 378 (456)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCCS-SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHcCCCEEEEEEChhcCCCch-HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHH
Confidence 999999999999999999986543 3345566677778888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEec
Q 005979 560 INQVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSR 637 (666)
Q Consensus 560 ln~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~ 637 (666)
||+++.+++..+|||. .+|+++|++|+||+.++||+|++|+|+++.++++|+|||+|+||+.|||.|+||+|.||.+
T Consensus 379 ln~~l~~~~~~~~pp~-~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 455 (456)
T 4dcu_A 379 LNDVIMDAVAMNPTPT-HNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 455 (456)
T ss_dssp HHHHHHHHHHHSCCCE-ETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC-
T ss_pred HHHHHHHHHHhCCCCC-CCCceeeEEEEecCCCCCCEEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEecC
Confidence 9999999999998886 4689999999999999999999999999999999999999999999999999999999865
No 4
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.94 E-value=7.8e-29 Score=268.80 Aligned_cols=269 Identities=21% Similarity=0.235 Sum_probs=192.8
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
...++|+++|.+|+|||||+|+|++.....++..+|+|.+.....+...+...+.||||||+.++..+. ....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-------~~~~ 104 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-------RLRV 104 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-------CCCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-------HHHH
Confidence 345799999999999999999999887767889999999999888886444489999999998875432 2234
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
.++..+++.+|++|+|+|+ +...++..|+.++.+.++|+|+|+||+|+...... ...+.+....++++++
T Consensus 105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------~~~~~l~~~~g~~v~~ 174 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------ELKGLYESRYEAKVLL 174 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------HHHHHSSCCTTCCCCC
T ss_pred HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--------HHHHHHHHHcCCCEEE
Confidence 5677789999999999999 67788899999999999999999999999765432 2234455555689999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhcc-cC---------------------CC--chh--HHHHHHHHHHccCCCCCCCCcce
Q 005979 529 STAIAGQSVDKIIVAAEMVDKERS-RR---------------------LS--TAT--INQVVQEAVAFKSPPRTRGGRRG 582 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~~-~~---------------------i~--t~~--ln~~l~~~~~~~~~p~~~~~k~~ 582 (666)
+||++|.|++++|+.|.+...+.. .. .+ ... .-+++++.+........ .+.-
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~~~--~~~~ 252 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALV--VKER 252 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEEEE--CCST
T ss_pred EECCCCCCHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHHHH--hhHH
Confidence 999999999999999998874321 11 11 112 34588888765432211 1112
Q ss_pred eEEEeeecCcCCCeEEEEEcCCCCCcHHHHHHHHHHHHhhcCCCCccEEEEEEecCccccccccchhhhhhccCCCCcee
Q 005979 583 RVYYCTQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSASRTQANLVPRDRKV 662 (666)
Q Consensus 583 ki~y~~q~~~~pp~fv~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (666)
.+..+......+|.+| .++.+.+.+.+. -.-....-+++.+.| +|++++.+...+|++++..|++||+||
T Consensus 253 ~l~~~l~~l~~~~~lv--~tdsq~~~~v~~-------~~p~~~~~t~~s~l~-a~~kG~~~~~~~g~~~~~~~~~gd~v~ 322 (423)
T 3qq5_A 253 ELRYVMENIGMKPKLV--ITDSQVAMKVAS-------DVPEDVELTTFSIVE-SRYRGDLAYFVESVRKIEELEDGDTVV 322 (423)
T ss_dssp THHHHHHHCSSCCSCC--CBCTTHHHHHHH-------TCCCSSSCCCBHHHH-HHHSSCSHHHHHHHHTTTTCCTTCEEE
T ss_pred HHHHHHHhcCCCccEE--EeccHHHHHHhc-------cCCCCCCcccHHHHh-hccCCCHHHHHHHHHHHHhCCCCCEEE
Confidence 2333444456889998 578875544443 233346678888888 899999999999999999999999999
Q ss_pred cccC
Q 005979 663 ASST 666 (666)
Q Consensus 663 ~~~~ 666 (666)
||+.
T Consensus 323 ~~e~ 326 (423)
T 3qq5_A 323 IMEG 326 (423)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9973
No 5
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=4.9e-26 Score=225.77 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=133.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-cccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
..++|+++|.+|||||||+|+|++.... ......+++.... .+...++ ..+.+|||||+.++..+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 4579999999999999999999965422 2233334333333 2222233 479999999987765432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
..+++.+|++|+|+|++++.+.++.. |+..+... ++|+++|+||+|+........ .....+....
T Consensus 79 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~------~~~~~~~~~~ 147 (218)
T 4djt_A 79 -----DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK------KLVMEVLKGK 147 (218)
T ss_dssp -----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH------HHHHHHTTTC
T ss_pred -----HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH------HHHHHHHHHc
Confidence 23678999999999999876655543 44555443 689999999999975432221 1223444556
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHccCCCCCCCCcceeEEEeeecCcCCCe
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQAAVRPPT 596 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~k~~ki~y~~q~~~~pp~ 596 (666)
+++++++||++|.|++++|..|.+.+.....++.++.+|.++.+++...++|.. ..+++|++|+.++||+
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEE----SKYIDYMEQASKMAPE 217 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC----------------------
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCcCCCccccCccCchh----hhhHHHHHHHhccCCC
Confidence 789999999999999999999999999999999999999988887777776652 2379999999999997
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=1.8e-22 Score=211.26 Aligned_cols=174 Identities=27% Similarity=0.360 Sum_probs=139.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.-.|+++|.||||||||+|+|++.....+++.+++|++.+...+.. + +..+.||||||+.++.. ...+...+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~----~~~l~~~~~~ 84 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKK----SDVLGHSMVE 84 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCT----TCHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCcccc----chhHHHHHHH
Confidence 4589999999999999999999998888899999999998887775 5 78999999999987541 1244566677
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHH-HHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRI-AERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i-~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
.+..+++.+|++|+|+|++++.+.++..+ +..+...++|+++|+||+|+..... ......+.+.+.+. ...++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~--~~~~~~~~l~~~~~--~~~~i~~ 160 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAK--NVLPLIDEIHKKHP--ELTEIVP 160 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGG--GGHHHHHHHHHHCT--TCCCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHH--HHHHHHHHHHHhcc--CCCeEEE
Confidence 78889999999999999999999999887 7888888999999999999973222 11222333333321 3578999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhccc
Q 005979 529 STAIAGQSVDKIIVAAEMVDKERSR 553 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~~~ 553 (666)
+||++|.|+++|++.|.+.+.+...
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCC
Confidence 9999999999999999988765433
No 7
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=3.9e-23 Score=197.49 Aligned_cols=159 Identities=28% Similarity=0.401 Sum_probs=125.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|||||||+|+|++.....+++.+++|++.....+.. ++..+.+|||||+.++. ...+.....+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~ 76 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS------DEVERIGIER 76 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS------SHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccch------hHHHHHHHHH
Confidence 4689999999999999999999876666788999999988777775 67789999999997632 1223333455
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
+..+++.+|++++|+|++++.+.++..|+..+.+. ++|+|+|+||+|+..... . +....+.+++
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~------------~~~~~~~~~~ 143 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-G------------MSEVNGHALI 143 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-E------------EEEETTEEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-h------------hhhccCCceE
Confidence 66788999999999999988776677777777664 689999999999854211 1 1122357899
Q ss_pred EEeCccCCCHHHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++||++|.|++++|+.|.+.+.
T Consensus 144 ~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 144 RLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999986543
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=1.7e-22 Score=200.82 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=129.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH--
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL-- 446 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~-- 446 (666)
..++|+++|.+|||||||+|+|++.. ...++..+|+|++.....+...++..+.||||||+....... ...+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~~~~ 104 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG---AAKAHWEQ 104 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS---THHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh---hhHHHHHH
Confidence 46899999999999999999999886 457888999999877666653467899999999986532110 111111
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc------
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA------ 520 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~------ 520 (666)
.....++....+|++|+|+|++++++..+..++.++...++|+|+|+||+|+..... .......+.+.+..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQE---SINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHH---HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhh---HHHHHHHHHHHHHhhhhccc
Confidence 122223333448889999999999999999999999889999999999999976422 12223333444443
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
....+++++||++|.|+++|++.|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 356889999999999999999999876543
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=9.9e-23 Score=212.30 Aligned_cols=164 Identities=24% Similarity=0.292 Sum_probs=133.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|+||||||||+|+|++.....+++.++||++.+...+. .++.+++||||||+.+.. ..+...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~-~~~~~l~l~DTpG~~~~~------~~l~~~~~~~ 79 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPM------DALGEFMDQE 79 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCC------SHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE-eCCcEEEEecCccccchh------hHHHHHHHHH
Confidence 357999999999999999999999887888999999998876665 367899999999997642 2345566677
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
+..+++.+|++|+|+|++++++..+..+++.+.+. ++|+|+|+||+|+..... . ..+.+ +.+ ..+.++++
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~----~~~~~-~~~--~~~~~~~~ 151 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-E----AMKAY-HEL--LPEAEPRM 151 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-H----HHHHH-HHT--STTSEEEE
T ss_pred HHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-H----HHHHH-HHh--cCcCcEEE
Confidence 88899999999999999999998888777888877 899999999999975422 0 11122 222 34568999
Q ss_pred EeCccCCCHHHHHHHHHHHHH
Q 005979 529 STAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+||++|.|+++|++.|.+...
T Consensus 152 iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 152 LSALDERQVAELKADLLALMP 172 (301)
T ss_dssp CCTTCHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCHHHHHHHHHHhcc
Confidence 999999999999999987643
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.6e-22 Score=220.56 Aligned_cols=165 Identities=27% Similarity=0.429 Sum_probs=121.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|+||||||||+|+|++.....+++.+|+|+|.....+.+ ++..+.||||||+..... ..++.....++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~-----~~~~~~~~~~~ 75 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQ-----DIISQKMKEVT 75 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGG-----GCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCcccccc-----chHHHHHHHHH
Confidence 589999999999999999999987778899999999999888875 888999999999875321 12234445677
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..+++.||++|+|+|++++++..+..+..++.+.++|+++|+||+|+... . .......+...+..+++++||
T Consensus 76 ~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~----~~~~~~~~~~lg~~~~~~iSA 147 (439)
T 1mky_A 76 LNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----F----EREVKPELYSLGFGEPIPVSA 147 (439)
T ss_dssp HHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----H----HHHTHHHHGGGSSCSCEECBT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----c----HHHHHHHHHhcCCCCEEEEec
Confidence 88999999999999999999999988888888889999999999998421 0 011111223344447899999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 005979 532 IAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~ 550 (666)
++|.|+++|++.|.+.+.+
T Consensus 148 ~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhccc
Confidence 9999999999999887754
No 11
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=3.2e-22 Score=220.60 Aligned_cols=160 Identities=38% Similarity=0.595 Sum_probs=130.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCc-cccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.||||||||+|+|++....++++++|||+|.....+.. +|..+.||||||+. ++.. ..+.+...
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~------~ve~~gi~ 315 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETND------LVERLGIE 315 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCT------TCCCCCHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchh------hHHHHHHH
Confidence 4799999999999999999999988788999999999999888876 78899999999997 5421 22334456
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
++..+++.+|++|+|+|++++.+.++..+++.+ .++|+|+|+||+|+..... .+ .+.+.+. ...++++|
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~----~~~~~~~--~~~~~i~i 384 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EE----EIKNKLG--TDRHMVKI 384 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HH----HHHHHHT--CSTTEEEE
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HH----HHHHHhc--CCCcEEEE
Confidence 677899999999999999998888888877665 4799999999999965311 11 2222222 23689999
Q ss_pred eCccCCCHHHHHHHHHHHH
Q 005979 530 TAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~ 548 (666)
||++|.|+++|++.|.+.+
T Consensus 385 SAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998863
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=2.1e-21 Score=188.48 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=117.5
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
...++|+++|.+|||||||+|+|++.. ...+.+.+|+|++.....+ +..+.+|||||+.+..... ...+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~---~~~~~~- 92 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSK---SEREAW- 92 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCH---HHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCH---HHHHHH-
Confidence 346899999999999999999999875 4556778888887654433 3379999999975432110 001111
Q ss_pred HHHHHHHHhhC---CeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 448 VNRAFRAIRRS---DVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 448 ~~~~~~~i~~a---dvvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
......+++.+ |++++|+|++++.+..+..+++++...++|+++|+||+|+...... ....+.+.+.+....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCC
Confidence 12233455555 9999999999999999988888888889999999999999764322 22334555556655678
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++++.|.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999999998654
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=7.2e-22 Score=185.13 Aligned_cols=158 Identities=26% Similarity=0.405 Sum_probs=116.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|+|||||+|+|++.........+++|.+.....+.. ++..+.+|||||+.+... .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK-------WEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSS-------CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc-------hHHHHHHHH
Confidence 589999999999999999999877556778889999888777765 677999999999876421 122223445
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..+++.+|++++|+|++++.+..+..+..++.+.++|+++|+||+|+.+... . +. .+...+..+++++||
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~--------~~-~~~~~~~~~~~~~Sa 143 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL-Y--------LG-PLYGLGFGDPIPTSS 143 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG-G--------CG-GGGGGSSCSCEECBT
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH-h--------HH-HHHhCCCCCeEEEec
Confidence 5678999999999999998888888888888888999999999999965321 1 11 122333348999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAEMV 547 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~ 547 (666)
++|.|++++|+.|.+.
T Consensus 144 ~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 144 EHARGLEELLEAIWER 159 (161)
T ss_dssp TTTBSHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHh
Confidence 9999999999998754
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=4.8e-21 Score=185.41 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=126.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.......+.+++|++...... +..+.+|||||+.....- .........
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~~~----~~~~~~~~~ 93 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVS----KKERMLWKR 93 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSCCC----HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCccccCC----hhhHHHHHH
Confidence 457999999999999999999998876777888888887654332 447899999997542110 000111111
Q ss_pred HHHHHHhh---CCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 450 RAFRAIRR---SDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 450 ~~~~~i~~---advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
....+++. +|++++|+|++.+.+..+..++.++...++|+++|+||+|+.+... .....+.+.+.+......++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSE---RAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG---HHHHHHHHHHHHHSSCCSCE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHH---HHHHHHHHHHHHhhcCCCce
Confidence 12234444 4999999999998888888889999999999999999999975432 23334455666666677899
Q ss_pred EEEeCccCCCHHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++||++|.|++++|++|.+...
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999987654
No 15
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=5e-22 Score=197.00 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=110.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|||||||+++|+... +.....|++..+.....+.. ++. .+.||||||+.++..+.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~----------- 79 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLI----------- 79 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGH-----------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHH-----------
Confidence 4799999999999999999999653 44455565666666655554 443 78899999998875542
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|+++..+.+... |+..+.. .+.|+|||+||+|+...+.....+ .+.++...++
T Consensus 80 ---~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e------~~~~a~~~~~ 150 (216)
T 4dkx_A 80 ---PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE------GERKAKELNV 150 (216)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHH------HHHHHHHHTC
T ss_pred ---HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHH------HhhHHHHhCC
Confidence 24789999999999999876666654 5555554 368999999999997654433221 1222333357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++|||++|.||+++|..|.+.+.
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999987643
No 16
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=1.2e-22 Score=223.95 Aligned_cols=162 Identities=27% Similarity=0.395 Sum_probs=101.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++.....+++++|||++.....+.. +|..+.||||||+.++.. ..+.+.+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~------~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE------EIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh------HHHHHHHH
Confidence 35789999999999999999999988788999999999999888875 788999999999976432 23444456
Q ss_pred HHHHHHhhCCeEEEEeeccccCCH----HHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITE----QDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~----~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
++..+++.+|++|+|+|++++.+. ....++..+. ++|+|+|+||+|+....... .+.+.+. ++.+
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~-----~~~l~~~----~~~~ 373 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL-----IRAIADG----TGTE 373 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH-----HHHHHHH----HTSC
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh-----HHHHHhc----CCCc
Confidence 677788999999999999998877 5555555544 79999999999997653221 1122221 2368
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++|||++|.|+++|++.|.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998876
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.5e-21 Score=186.74 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.........++++.+.....+.. ++. .+.+|||||+.++..+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----------- 76 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSV----------- 76 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------
Confidence 35799999999999999999999876444455566666665555444 443 7899999998765332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++++|+|++++.+.++. .|+..+.. .++|+++|+||+|+...+.... +. ...+.+ ..+
T Consensus 77 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~~~~----~~~ 147 (180)
T 2g6b_A 77 ---THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR-ED-GEKLAK----EYG 147 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH-HH-HHHHHH----HHT
T ss_pred ---HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH-HH-HHHHHH----HcC
Confidence 23367899999999999986554443 35555555 4789999999999976443221 11 111222 124
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHhcccCC
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKERSRRL 555 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i 555 (666)
++++++||++|.|++++|+.|.+.+.+...++
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 179 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHC-----
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhccC
Confidence 68999999999999999999988776554443
No 18
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=1.5e-21 Score=186.22 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=122.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|.+|||||||+|+|++.. +.....+++|.+.....+.. ++..+.+|||||+.++..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~----------- 73 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRA----------- 73 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHH-----------
Confidence 46899999999999999999999765 44555667777666555654 678899999999987755432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHH--HHhcCC--CCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE--KLRALD--WAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~--~l~~~~--~~~ 525 (666)
.+++.+|++++|+|++++...+....+..+...++|+++|+||+|+..... +.....+.. .+.... .++
T Consensus 74 ---~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 74 ---RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP----DRVMQELMEYNLVPEEWGGDTI 146 (178)
T ss_dssp ---SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH----HHHHHHHTTTTCCBTTTTSSEE
T ss_pred ---HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH----HHHHHHHHhcCcChhHcCCccc
Confidence 256789999999999998888888888877777999999999999975321 111111111 011111 258
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHHhcc
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDKERS 552 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~~~~ 552 (666)
++++||++|.|++++|+.|.+.+....
T Consensus 147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 147 FCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999999999988776543
No 19
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=6.3e-22 Score=203.77 Aligned_cols=186 Identities=17% Similarity=0.307 Sum_probs=134.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|+|.. ..+++++|+|++.....+.. ++..+.+|||||+.++....... ..+. .+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~-~~~e-~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQT-SLDE-QIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----C-CHHH-HHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccC-CHHH-HHHH
Confidence 4799999999999999999999886 68899999999999888885 67899999999998875432211 1222 2333
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
.+...+.+|++|+|+|+++. .....+..++.+.++|+|+|+||+|+.+....... .+.+.+.+ ++|++++|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~~i~~S 149 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIE---IDALSARL----GCPVIPLV 149 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEEC---HHHHHHHH----TSCEEECC
T ss_pred HHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHH---HHHHHHhc----CCCEEEEE
Confidence 44455899999999999874 56677888888899999999999998643221110 11222222 57999999
Q ss_pred CccCCCHHHHHHHHHHHHHhcc--cCCCchhHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEMVDKERS--RRLSTATINQVVQEAVA 569 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~~~~~~--~~i~t~~ln~~l~~~~~ 569 (666)
|++|.|+++|++.|.+...... ...-...+...+.....
T Consensus 150 A~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~ 190 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAK 190 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHHHHHHH
Confidence 9999999999999987654321 11123445555544443
No 20
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=4.9e-21 Score=191.40 Aligned_cols=187 Identities=20% Similarity=0.201 Sum_probs=123.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.. +.+.+.+++|++.....+.. ++..+.||||||+.+...... ...+. .
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~~~~~---~ 100 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENR--NTIEM---T 100 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGC--CHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchh--hhHHH---H
Confidence 35799999999999999999999875 44677888888877666654 677899999999965321100 01111 1
Q ss_pred HHHHHHhhCCeEEEEeeccccCC---HHHHHHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC-
Q 005979 450 RAFRAIRRSDVVALVIEAMACIT---EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW- 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t---~~d~~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~- 523 (666)
....++..+|++|+|+|++++.+ .....++..+... ++|+++|+||+|+......... ....+. .+....+
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~-~~~~~~~~ 177 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSID--NKLLIK-QILDNVKN 177 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHH--HHHHHH-HHHHHCCS
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHH--HHHHHH-HHHHhcCC
Confidence 11234678899999999998755 3344566666665 8999999999999765433211 111222 2222233
Q ss_pred -CCEEEEeCccCCCHHHHHHHHHHHHHhc--ccCCCchhHHHHHHHH
Q 005979 524 -APIVYSTAIAGQSVDKIIVAAEMVDKER--SRRLSTATINQVVQEA 567 (666)
Q Consensus 524 -~~ii~vSAk~g~gv~~L~~~i~~~~~~~--~~~i~t~~ln~~l~~~ 567 (666)
++++++||++|.||+++|+.|.+.+... ..++++.. ++++..+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~~~~~-~~~~~~~ 223 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQE-QLLNTKL 223 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcccc
Confidence 7899999999999999999998876432 45555555 6665543
No 21
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=7.6e-22 Score=200.95 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=122.7
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|||||||+|+|+|.. ..+++++|+|++.....+.. ++..+.||||||+.++...... ...++. +.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~-~~~~e~-i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEG-ISQDEQ-IAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC-------CHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccC-CCHHHH-HHHH
Confidence 589999999999999999999875 67899999999999888875 7789999999999876432100 011221 2222
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
....+.+|++|+|+|+++. .....+..++.+.++|+|+|+||+|+......... ...+.+.+ ++|++++||
T Consensus 78 ~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~vi~~SA 148 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISID---TEKLESLL----GCSVIPIQA 148 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEEC---HHHHHHHH----CSCEEECBG
T ss_pred HHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHH---HHHHHHHc----CCCEEEEEC
Confidence 2223889999999999984 56667888888889999999999998643222110 11223332 589999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAEMV 547 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~ 547 (666)
++|.|+++|++.|.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999876
No 22
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=3.3e-22 Score=213.78 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=165.9
Q ss_pred CCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHH----hcCCCCeeecccCCCChHHHHHHHHHHhhhh---
Q 005979 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFW----SLGFSPLPISAISGTGTGELLDLVCSELKKV--- 358 (666)
Q Consensus 286 ~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~----~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~--- 358 (666)
+.+.-.++.+.+. ..+|.++++||+|+........+..+ ..+.....+++..+.+...+...+...-...
T Consensus 74 ~~p~~~~l~~~~~---~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l 150 (357)
T 2e87_A 74 LPKFYQELVDVLV---DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYL 150 (357)
T ss_dssp SCHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554443 35677899999998776544333322 2244455556555555555544332211110
Q ss_pred cCC----cchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccc
Q 005979 359 EGT----EDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 359 ~~~----~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~ 434 (666)
... ..........++|+++|.+|||||||+|+|++.. ..+...+++|.+.....+.. ++..+.+|||||+.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 151 NKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp HHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSC
T ss_pred HHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccc
Confidence 000 0000012346799999999999999999999876 55677888888877666654 57789999999997642
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC--CHHH-HHHHHHHHH-h-CCcEEEEEecccCCCCcchhhHHH
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI--TEQD-CRIAERIEQ-E-GKGCLIVVNKWDTIPNKNQQTATY 509 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~--t~~d-~~i~~~i~~-~-~~pvIlv~NK~Dl~~~~~~~~~~~ 509 (666)
.... ...+ ..........+|++|+|+|++.+. +.++ ..++..+.. . ++|+|+|+||+|+...... +
T Consensus 229 ~~~~--~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~---~- 299 (357)
T 2e87_A 229 ISER--NEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI---K- 299 (357)
T ss_dssp STTS--CHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHH---H-
T ss_pred hhhh--hHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHH---H-
Confidence 2110 1111 111122234699999999987643 4443 456666655 2 7999999999999653211 1
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHHHHHHH
Q 005979 510 YEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEA 567 (666)
Q Consensus 510 ~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~l~~~ 567 (666)
.+...+. ..+.++++|||++|.|+++|++.|.+.+.....++....++.+++..
T Consensus 300 ---~~~~~~~-~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~l~r~ 353 (357)
T 2e87_A 300 ---RLEKFVK-EKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELRRY 353 (357)
T ss_dssp ---HHHHHHH-HTTCCCEECBTTTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHH-hcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHHhhhcchhHHHHHHhh
Confidence 1112222 23578999999999999999999998887665566666666666543
No 23
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=1.5e-21 Score=184.89 Aligned_cols=158 Identities=26% Similarity=0.402 Sum_probs=110.5
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|||||||+|+|++.. +.++..+|+|++.....+.. ++..+.+|||||+.++.... ... .+ .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~-----~~~-~~--~ 73 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS-----IDE-II--A 73 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS-----HHH-HH--H
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc-----hhH-HH--H
Confidence 689999999999999999999764 45677888888877766664 67899999999998753211 111 11 1
Q ss_pred HHHH--hhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 452 FRAI--RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 452 ~~~i--~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
..++ ..+|++++|+|+++. .....|+..+.+.++|+|+|+||+|+........ + .+.+.+.+ +++++++
T Consensus 74 ~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~--~~~~~~~~----~~~~~~~ 144 (165)
T 2wji_A 74 RDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI-D--VDKLEKIL----GVKVVPL 144 (165)
T ss_dssp HHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCC-C--HHHHHHHH----TSCEEEC
T ss_pred HHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhh-H--HHHHHHHh----CCCEEEE
Confidence 2233 489999999999863 3345577777778999999999999853221111 0 11222222 4689999
Q ss_pred eCccCCCHHHHHHHHHHHH
Q 005979 530 TAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~ 548 (666)
||++|.|++++|+.|.+..
T Consensus 145 SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp BGGGTBSHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 9999999999999987643
No 24
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=2.9e-21 Score=182.10 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=99.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.+||+++|.+|||||||+|+|++.......+.++++..... .+. .....+.+|||||+.++..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~D~~g~~~~~~~~------------- 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVD-GEEASLMVYDIWEQDGGRWLP------------- 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EET-TEEEEEEEEECC----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EEC-CEEEEEEEEECCCCccchhhh-------------
Confidence 47999999999999999999998776667777777775322 221 123478999999987654322
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..+++.+|++++|+|++++.+.+... |+..+... ++|+++|+||+|+.+.+.....+ .+.+....+++
T Consensus 67 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~ 139 (166)
T 3q72_A 67 -GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE------GRACAVVFDCK 139 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH------HHHHHHHTTCE
T ss_pred -hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH------HHHHHHHhCCc
Confidence 23678999999999999865544433 55555543 78999999999997654432211 12233334579
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++||++|.|++++|+.|.+....
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999876543
No 25
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=5.7e-21 Score=178.97 Aligned_cols=159 Identities=42% Similarity=0.683 Sum_probs=120.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|+++|.+|+|||||+|+|++.....+...+++|.+.......+.+..+.+|||||+.......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------------- 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE--------------- 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH---------------
Confidence 57999999999999999999998766677888999998888888889999999999997532211
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
..+...+...+..+|++++|+|+..+++..+..+.++++. .+.|+++|+||+|+.... ...
T Consensus 67 ----------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-~~~ 127 (161)
T 2dyk_A 67 ----------------KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHE-LYL 127 (161)
T ss_dssp ----------------HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGG-GGC
T ss_pred ----------------HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccch-HhH
Confidence 1233455667889999999999999888888888888876 478999999999997653 222
Q ss_pred HHHHhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 324 ~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.++...++ .++++||++|.|++++++.|.+.++
T Consensus 128 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 128 GPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp GGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 33446677 7899999999999999999987653
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=2.3e-21 Score=197.64 Aligned_cols=162 Identities=22% Similarity=0.364 Sum_probs=122.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|++.. ..+++++|+|.+.....+.. ++..+.||||||+.++...+ .++. +.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~-----~~e~-v~~ 76 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSS-----IDEK-IAR 76 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSS-----HHHH-HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCC-----HHHH-HHH
Confidence 4789999999999999999999875 55888999999988888775 67899999999998764432 1221 112
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
..-....+|++++|+|+++. .....++.++.+.++|+++|+||+|+......... .+.+.+.+ ++|++++|
T Consensus 77 ~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~---~~~l~~~l----g~~vi~~S 147 (258)
T 3a1s_A 77 DYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKID---RYELQKHL----GIPVVFTS 147 (258)
T ss_dssp HHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBC---HHHHHHHH----CSCEEECC
T ss_pred HHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHH---HHHHHHHc----CCCEEEEE
Confidence 22122689999999999874 45566788888889999999999998543222110 12222222 57999999
Q ss_pred CccCCCHHHHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~~~ 549 (666)
|++|.|+++||+.|.+...
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988765
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=6.5e-21 Score=185.41 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=113.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccc--cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~--~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|||||||+|+|++.....+ .+..|.+. ..+. ..+..+.||||||+.++..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~----~~~~-~~~~~~~i~Dt~G~~~~~~~~~-------- 81 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV----ETFE-KGRVAFTVFDMGGAKKFRGLWE-------- 81 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE----EEEE-ETTEEEEEEEECCSGGGGGGGG--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE----EEEE-eCCEEEEEEECCCCHhHHHHHH--------
Confidence 3457999999999999999999998764443 33333222 2333 3677999999999987654431
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh-----------CCcEEEEEecccCCCCcchhhHHHHHHHH
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE-----------GKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~-----------~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l 514 (666)
.+++.+|++|+|+|++++.+.... .++..+... ++|+|+|+||+|+...... +++.+.+
T Consensus 82 ------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~ 152 (199)
T 4bas_A 82 ------TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEIL 152 (199)
T ss_dssp ------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHH
T ss_pred ------HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHh
Confidence 257899999999999988765554 455555443 8999999999999765322 2222222
Q ss_pred HH-HHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 515 RE-KLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 515 ~~-~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
.. .+....++++++|||++|.||+++|+.|.+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 153 DLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp THHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 21 12133567899999999999999999998876554
No 28
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.85 E-value=4.2e-23 Score=221.16 Aligned_cols=235 Identities=18% Similarity=0.163 Sum_probs=156.8
Q ss_pred HHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--h---hH-H-HHHhcCC---CCeee
Q 005979 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M---QV-S-EFWSLGF---SPLPI 336 (666)
Q Consensus 267 ~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~---~~-~-~~~~~~~---~~i~i 336 (666)
......++++++|+|+.+.......++.++ ..++|+++|+||+|+..... . .. . .+...|+ .++.+
T Consensus 66 ~~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 141 (369)
T 3ec1_A 66 HRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLV 141 (369)
T ss_dssp HHHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEEC
T ss_pred HHhhccCcEEEEEEECCCCCCchhhHHHHH----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 344578899999999987543222223333 24789999999999976421 1 11 1 1334566 57899
Q ss_pred cccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhcc-----CcccccCCCcceeeeEe
Q 005979 337 SAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDAID 411 (666)
Q Consensus 337 Sa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~-----~~~~~~~~~gtT~d~~~ 411 (666)
||++|.|+++|++.|.+... ..+|+++|.||+|||||+|+|++. ....+++.+|||++...
T Consensus 142 SA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~ 207 (369)
T 3ec1_A 142 SAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE 207 (369)
T ss_dssp BTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE
T ss_pred ECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE
Confidence 99999999999999876553 247999999999999999999987 56778999999999876
Q ss_pred EEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHH---hhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc
Q 005979 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI---RRSDVVALVIEAMACITEQDCRIAERIEQEGKG 488 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i---~~advvllViDa~~~~t~~d~~i~~~i~~~~~p 488 (666)
..+. ..+.++||||+.+...+. .+........+ +..|.+++++|+.+.+....+..+..+...+.|
T Consensus 208 ~~~~----~~~~liDtPG~~~~~~~~-------~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~ 276 (369)
T 3ec1_A 208 IPLE----SGATLYDTPGIINHHQMA-------HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS 276 (369)
T ss_dssp EECS----TTCEEEECCSCCCCSSGG-------GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE
T ss_pred EEeC----CCeEEEeCCCcCcHHHHH-------HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce
Confidence 4432 248999999997653221 11111233344 788999999998533211122223444455789
Q ss_pred EEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCH
Q 005979 489 CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSV 537 (666)
Q Consensus 489 vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv 537 (666)
+++++||+|........... +.+.+.+ +..+.+.++....++
T Consensus 277 ~~~v~~k~d~~~~~~~~~~~---~~~~~~~----g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 277 FVCYMANELTVHRTKLEKAD---SLYANQL----GELLSPPSKRYAAEF 318 (369)
T ss_dssp EEEEECTTSCEEEEEGGGHH---HHHHHHB----TTTBCSSCGGGTTTC
T ss_pred EEEEecCCcccccccHHHHH---HHHHHhc----CCccCCCCchhhhhc
Confidence 99999999987644333222 2222222 345666667665554
No 29
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.3e-21 Score=214.88 Aligned_cols=179 Identities=27% Similarity=0.363 Sum_probs=123.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|+||||||||+|+|++.....+.+.+|+|+|.....+.. ++..+.||||||+.... ..+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~------~~~~~~~~~~~ 76 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD------EPFLAQIRQQA 76 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc------hhHHHHHHHHH
Confidence 689999999999999999999988778999999999998888764 78899999999986321 12344456677
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
..+++.||++|+|+|++++.+..+..+.+.+.+.++|+++|+||+|+...... . . .+...+..+++++||
T Consensus 77 ~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~-~--------~-~~~~lg~~~~~~iSA 146 (436)
T 2hjg_A 77 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN-I--------Y-DFYSLGFGEPYPISG 146 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C-C--------C-SSGGGSSCCCEECBT
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh-H--------H-HHHHcCCCCeEEEeC
Confidence 88999999999999999999999988888888889999999999998653211 0 0 112233347899999
Q ss_pred ccCCCHHHHHHHHHHHHHhcc--------cCC---------CchhHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAEMVDKERS--------RRL---------STATINQVVQEA 567 (666)
Q Consensus 532 k~g~gv~~L~~~i~~~~~~~~--------~~i---------~t~~ln~~l~~~ 567 (666)
++|.|+++|++.+.+.+.+.. .++ .|+.+|+++...
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 999999999999988765321 122 267788887654
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=183.77 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=116.4
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||..++..+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------- 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITS-------- 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCG--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHH--------
Confidence 345899999999999999999999765 33566677777776666664 55 5799999999877654432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++++|+|++++.+.+... |+..+... ++|+|+|+||+|+.+.......+ . ..+....+
T Consensus 77 ------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~--~----~~~~~~~~ 144 (181)
T 3tw8_B 77 ------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETED--A----YKFAGQMG 144 (181)
T ss_dssp ------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHH--H----HHHHHHHT
T ss_pred ------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHH--H----HHHHHHcC
Confidence 2678999999999999875555543 55555554 58999999999986543322111 1 11222225
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|+.|.+.+..
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877544
No 31
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=4.2e-21 Score=200.03 Aligned_cols=163 Identities=28% Similarity=0.339 Sum_probs=131.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
..|+|+|+||||||||+|+|++.+.+++++.+++|++...+...+++.++.+|||||+..... .
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~------------- 71 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---A------------- 71 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---H-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---H-------------
Confidence 469999999999999999999998888888999999988887778889999999999975221 1
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--h
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M 321 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~ 321 (666)
+...+...+..++..+|++|||+|+.++++..+..+.+.++....+.|+++|+||+|+..... .
T Consensus 72 --------------l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 137 (301)
T 1wf3_A 72 --------------LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM 137 (301)
T ss_dssp --------------HHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHH
Confidence 222345667788899999999999999999888888888876433789999999999875432 1
Q ss_pred hHHHHHhcCC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 322 QVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 322 ~~~~~~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.....+ .++ +++++||++|.|+++|++.|.+.+++
T Consensus 138 ~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 138 KAYHEL-LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 111122 343 57999999999999999999987764
No 32
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=183.08 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=104.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.......+.+|++.... .+.. ++ ..+.+|||||+.+.. ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~D~~g~~~~~----------~~-- 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYER--TLTV-DGEDTTLVVVDTWEAEKLD----------KS-- 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEE--EEEE-TTEEEEEEEECCC-----------------C--
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEE--EEEE-CCEEEEEEEEecCCCCccc----------hh--
Confidence 4799999999999999999999877655556666655433 3333 33 378999999986521 00
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.....+++.+|++++|+|+++..+.+.. .|+..+.+. ++|+++|+||+|+.+.+.....+ ... +....+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~--~~~----~~~~~~ 142 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE--GRA----CAVVFD 142 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH--HHH----HHHHHT
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHH--HHH----HHHHcC
Confidence 1123357889999999999886554443 355556553 79999999999997654332211 111 111224
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|+.|.+....
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999876543
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=183.25 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=117.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 81 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI----------- 81 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh-----------
Confidence 45799999999999999999999764 44555677777776666664 44 47999999998765332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+...+.....+ .+.+....+
T Consensus 82 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~ 152 (196)
T 3tkl_A 82 ---TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT------AKEFADSLG 152 (196)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHH------HHHHHHHTT
T ss_pred ---HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHH------HHHHHHHcC
Confidence 23478999999999999986554443 355555554 78999999999997654432211 122233335
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|..|.+.+.+
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999876654
No 34
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=2.5e-21 Score=212.56 Aligned_cols=162 Identities=34% Similarity=0.474 Sum_probs=119.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.||||||||+|+|++.....+++.+|||+|.....+.. +|..+.||||||+.++.. ..+...+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~------~ve~~gi~ 295 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSD------QVEKIGVE 295 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchh------HHHHHHHH
Confidence 35789999999999999999999987778899999999998777775 788999999999976432 23444456
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-CCCCCEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-LDWAPIVY 528 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~-~~~~~ii~ 528 (666)
++..+++.+|++|+|+|++++.+.++..+++.+.. +|+|+|+||+|+....... .+.. ....++++
T Consensus 296 ~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~-----------~~~~~~~~~~~i~ 362 (462)
T 3geh_A 296 RSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT-----------SLEYPENITQIVH 362 (462)
T ss_dssp ---CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST-----------TCCCCTTCCCEEE
T ss_pred HHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH-----------HHHHhccCCcEEE
Confidence 67778899999999999999999988888877654 7999999999997643221 1111 13578999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhc
Q 005979 529 STAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+||++|.|+++|++.|.+.....
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887553
No 35
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.85 E-value=1.2e-22 Score=217.48 Aligned_cols=209 Identities=21% Similarity=0.200 Sum_probs=138.6
Q ss_pred HHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch--hhHH-----HHHhcCC---CCe
Q 005979 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS-----EFWSLGF---SPL 334 (666)
Q Consensus 265 ~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~~~-----~~~~~~~---~~i 334 (666)
......+.++++++|+|+.+. +..+...+.+...++|+++|+||+|+..... .... .+...|+ .++
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~ 137 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVF 137 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEE
Confidence 333444567799999999753 2233333444335899999999999975431 1111 1334576 578
Q ss_pred eecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccC------cccccCCCcceee
Q 005979 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTRD 408 (666)
Q Consensus 335 ~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~------~~~~~~~~gtT~d 408 (666)
.+||++|.|+++|++.|.+... ..+|+++|.+|+|||||+|+|++.. ...++..+|||++
T Consensus 138 ~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~ 203 (368)
T 3h2y_A 138 LISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD 203 (368)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C
T ss_pred EEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc
Confidence 9999999999999999876542 2579999999999999999999863 3457899999998
Q ss_pred eEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHH---HhhCCeEEEEeeccccCCHHHHHHHHHHHHh
Q 005979 409 AIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA---IRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (666)
Q Consensus 409 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~---i~~advvllViDa~~~~t~~d~~i~~~i~~~ 485 (666)
.....+. + .+.++||||+.+...+.. .+. ...+.. ....+.+++++|+...+....+..+..+...
T Consensus 204 ~~~~~~~--~--~~~liDtPG~~~~~~~~~---~l~----~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~ 272 (368)
T 3h2y_A 204 LIDIPLD--E--ESSLYDTPGIINHHQMAH---YVG----KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGG 272 (368)
T ss_dssp EEEEESS--S--SCEEEECCCBCCTTSGGG---GSC----HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS
T ss_pred eEEEEec--C--CeEEEeCCCcCcHHHHHH---Hhh----HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCC
Confidence 8765432 2 389999999976532211 111 122222 3678999999998432211222223444455
Q ss_pred CCcEEEEEecccCCCCc
Q 005979 486 GKGCLIVVNKWDTIPNK 502 (666)
Q Consensus 486 ~~pvIlv~NK~Dl~~~~ 502 (666)
+.|+++++||+|.....
T Consensus 273 ~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 273 RRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp SEEEEEEECTTSCEEEE
T ss_pred CceEEEEecCccccccc
Confidence 78999999999987643
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=2.6e-20 Score=194.86 Aligned_cols=165 Identities=31% Similarity=0.488 Sum_probs=133.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..|+++|+||||||||+|+|+|.+.+.+++.+++|++...+....+ +.++.+|||||+..... ...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~------------ 77 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDV------------ 77 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCH------------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chh------------
Confidence 3899999999999999999999998888999999999999888888 89999999999976331 111
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHH-HHHHHhhcCCCcEEEEeccCCCC-ccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI-ADWLRKNYMDKFIILAVNKCESP-RKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i-~~~l~~~~~~~p~ilv~NK~D~~-~~~~ 320 (666)
+...+...+..++..+|+++||+|+..+.+..+..+ ++.++. .+.|+++|+||+|+. ....
T Consensus 78 ---------------l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~ 140 (308)
T 3iev_A 78 ---------------LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKN 140 (308)
T ss_dssp ---------------HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGG
T ss_pred ---------------HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHH
Confidence 223355667788899999999999999989888877 777776 478999999999987 3322
Q ss_pred -hhH-HHHH-hcC--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 -MQV-SEFW-SLG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 -~~~-~~~~-~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
... ..+. .++ ..++++||.+|.|+++|++.|.+.+++.
T Consensus 141 ~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 141 VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 111 1222 233 4789999999999999999999988753
No 37
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=4.5e-21 Score=196.77 Aligned_cols=159 Identities=23% Similarity=0.357 Sum_probs=119.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.||||||||+|+|+|.. ..++++||+|++.....+.. +..+.+|||||+.++.... .+.. +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~-----~~e~-v-- 71 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS-----PEAK-V-- 71 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS-----HHHH-H--
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC-----hHHH-H--
Confidence 4689999999999999999999875 56889999999987777653 7789999999998764321 1111 1
Q ss_pred HHHHHh--hCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 451 AFRAIR--RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 451 ~~~~i~--~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
+..++. .+|++++|+|+++. .....|..++.+.++|+|+|+||+|+........ ....+.+.+ ++|+++
T Consensus 72 ~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~~l----g~~vi~ 142 (272)
T 3b1v_A 72 ARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKI---NVDKLSYHL----GVPVVA 142 (272)
T ss_dssp HHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCC---CHHHHHHHH----TSCEEE
T ss_pred HHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHH---HHHHHHHHc----CCCEEE
Confidence 122343 69999999999874 4456677888888999999999999854221110 011222222 579999
Q ss_pred EeCccCCCHHHHHHHHHHHHH
Q 005979 529 STAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+||++|.|+++||+.|.+.+.
T Consensus 143 ~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSCT
T ss_pred EEccCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 38
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.84 E-value=3.5e-21 Score=200.42 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcc-----cccCCCc--------------
Q 005979 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG-------------- 404 (666)
Q Consensus 344 i~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~-----~~~~~~g-------------- 404 (666)
+-++++.+.+.+...... .....++|+++|.+|||||||+|+|+|.... .++..|+
T Consensus 4 ~~~~~~~l~~~l~~~~~~-----~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~ 78 (299)
T 2aka_B 4 LIPLVNRLQDAFSAIGQN-----ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEF 78 (299)
T ss_dssp HHHHHHHHHHHHTTSCCC-----TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-----CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchh
Confidence 344555565555543211 1234689999999999999999999988754 4445554
Q ss_pred --------ceeeeE-----------------------eEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHH
Q 005979 405 --------TTRDAI-----------------------DTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (666)
Q Consensus 405 --------tT~d~~-----------------------~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (666)
+|++.+ ...+..+++..+.||||||+.+...-. .....+......+..
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~-~~~~~~~~~~~~~~~ 157 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGD-QPPDIEFQIRDMLMQ 157 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSS-SCTTHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCC-CCchHHHHHHHHHHH
Confidence 444311 111111224689999999986522100 001223344566777
Q ss_pred HHhhCCeEE-EEeeccccCCHHHH-HHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC--CCCCEEEE
Q 005979 454 AIRRSDVVA-LVIEAMACITEQDC-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIVYS 529 (666)
Q Consensus 454 ~i~~advvl-lViDa~~~~t~~d~-~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~--~~~~ii~v 529 (666)
+++.++.++ +|+|++++++.++. .+++.+...++|+++|+||+|+.+.... ..+ .+...+... ++.+++++
T Consensus 158 ~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~----~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 158 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD-ARD----VLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC-CHH----HHTTCSSCCTTCEEECCCC
T ss_pred HHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch-HHH----HHhCCcCcCCCCcEEEECC
Confidence 888888776 79999988777664 5777777778999999999999764331 111 111111111 34578999
Q ss_pred eCccCCCHHHHHHHHHHHH---------HhcccCCCchhHHHHHHHHHHc
Q 005979 530 TAIAGQSVDKIIVAAEMVD---------KERSRRLSTATINQVVQEAVAF 570 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~---------~~~~~~i~t~~ln~~l~~~~~~ 570 (666)
||++|.|+++|++.|.+.. ..+..+++|..++.++++.+..
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~ 282 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 282 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHH
Confidence 9999999999999987642 2345678889999999988754
No 39
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=1.6e-20 Score=176.82 Aligned_cols=157 Identities=20% Similarity=0.133 Sum_probs=108.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+...+ +..+.+|||||+.++..+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------------- 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM------------- 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH-------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHH-------------
Confidence 36899999999999999999997542 23333444444444444322 337899999998765322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.+.. .|+..+... ++|+++|+||+|+...+.... +...+......+.
T Consensus 68 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~ 141 (167)
T 1c1y_A 68 -RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK-----EQGQNLARQWCNC 141 (167)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH-----HHHHHHHHHTTSC
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCH-----HHHHHHHHHccCC
Confidence 23467889999999999876444443 355555442 799999999999965433221 1122223334468
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++++.|.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997654
No 40
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=2.4e-20 Score=176.56 Aligned_cols=159 Identities=16% Similarity=0.059 Sum_probs=110.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|.+|||||||+|+|++..... ..+++ ......+.. ++..+.+|||||+.++..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~------------ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT--TIPTI--GFNVETVTY-KNLKFQVWDLGGLTSIRPYW------------ 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCCCS--SEEEEEEEE-TTEEEEEEEECCCGGGGGGG------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC--cCCcC--ccceEEEEE-CCEEEEEEECCCChhhhHHH------------
Confidence 35799999999999999999999765432 22222 222334443 57899999999997764432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+...... .++.+.+........++
T Consensus 69 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 69 --RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKW 143 (171)
T ss_dssp --GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCE
T ss_pred --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCce
Confidence 2257899999999999987665443 24444433 47999999999999764321 22222222222223346
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|++++|+.|.+...+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999876643
No 41
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=1.7e-20 Score=177.46 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=108.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++. .+.+|||||+.++..+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~--------- 73 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGP--------- 73 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------C---------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHH---------
Confidence 35799999999999999999999764 33344555555555555554 443 789999999876543321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++++|+|++++.+.++.. |+..+.. .++|+++|+||+|+.+.+.... + ...+ +....+
T Consensus 74 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~~-~~~~~~ 142 (170)
T 1z08_A 74 -----IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI-Q----EAES-YAESVG 142 (170)
T ss_dssp -----CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH-H----HHHH-HHHHTT
T ss_pred -----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCH-H----HHHH-HHHHcC
Confidence 2568999999999998865544443 5555544 4789999999999975433221 1 1112 222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|+.|.+...
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999986543
No 42
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=2.9e-20 Score=191.10 Aligned_cols=165 Identities=22% Similarity=0.383 Sum_probs=126.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|+|.. ..+++.+|+|.+.....+.. ++..+.+|||||+.++.... .+. ...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~-----~~~-~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHS-----IDE-LIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSC-----HHH-HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCC-----HHH-HHHH
Confidence 4789999999999999999999875 47889999999998888875 77889999999998764321 121 1222
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhC-CcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEE
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~-~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~v 529 (666)
.......+|++++|+|+++. .....++..+.+.+ +|+++|+||+|+......... ...+.+.+ ++|++++
T Consensus 75 ~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~l----g~~~~~~ 145 (271)
T 3k53_A 75 NFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID---IKKMRKEL----GVPVIPT 145 (271)
T ss_dssp HHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC---HHHHHHHH----SSCEEEC
T ss_pred HhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH---HHHHHHHc----CCcEEEE
Confidence 22223789999999999986 56677778888888 999999999998542221110 22233333 5899999
Q ss_pred eCccCCCHHHHHHHHHHHHHhcc
Q 005979 530 TAIAGQSVDKIIVAAEMVDKERS 552 (666)
Q Consensus 530 SAk~g~gv~~L~~~i~~~~~~~~ 552 (666)
||++|.|++++++.|.+......
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHTCC
T ss_pred EeCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999998876643
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.6e-20 Score=178.82 Aligned_cols=157 Identities=18% Similarity=0.115 Sum_probs=107.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|++.......+..|.+. ..+.. ++..+.+|||||+.++..+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~~~------------- 77 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVI-NNTRFLMWDIGGQESLRSSW------------- 77 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEE-TTEEEEEEECCC----CGGG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEE-CCEEEEEEECCCCHhHHHHH-------------
Confidence 5799999999999999999999765443333333322 23333 67899999999997654332
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..+++.+|++|+|+|++++.+.+... ++..+.. .++|+++|+||+|+...... +++.+.+........+.+
T Consensus 78 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 78 -NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp -HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEE
T ss_pred -HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhhcCCCcE
Confidence 23678999999999999876655443 5555543 47999999999999753221 122222211111223468
Q ss_pred EEEEeCccCCCHHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++||++|.|+++++++|.+...
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999986653
No 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=6.2e-21 Score=183.14 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=90.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTIT---------- 74 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------C----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhH----------
Confidence 35799999999999999999999653 34445566777766555554 44 589999999987654432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
..+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+...+.... +.. ..+.+ ..+
T Consensus 75 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~-~~~~~----~~~ 144 (183)
T 2fu5_C 75 ----TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSK-ERG-EKLAL----DYG 144 (183)
T ss_dssp ----CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCH-HHH-HHHHH----HHT
T ss_pred ----HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCH-HHH-HHHHH----HcC
Confidence 2267899999999999986554443 356666653 689999999999976433221 111 11222 124
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..|.+...
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986643
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=180.08 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=109.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~------------ 90 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNS------------ 90 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHH------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHH------------
Confidence 457999999999999999999997653 2333445555555555554 44 4789999999865422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++|+|+|++++.+.++.. |+..+... ++|+++|+||+|+...+.... + ...+......+
T Consensus 91 --~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~-~----~~~~~~~~~~~ 163 (192)
T 2il1_A 91 --ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR-Q----QGEKFAQQITG 163 (192)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-H----HHHHHHHTSTT
T ss_pred --HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-H----HHHHHHHhcCC
Confidence 2345789999999999999876655543 44555543 789999999999965433221 1 12223333456
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
.+++++||++|.|++++|+.|.+...
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999986543
No 46
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=3.7e-20 Score=183.86 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=127.0
Q ss_pred CCCCCCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEe-ecCeeEEEEecCCcccccCCchhhhhhhh
Q 005979 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (666)
Q Consensus 159 ~~~~~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 236 (666)
.....++|+++|.+|||||||+|+|++.. .+.+...+++|.+....... +.+..+.+|||||+........ ..+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~--- 100 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA-AKA--- 100 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST-HHH---
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh-hHH---
Confidence 34456899999999999999999999987 46788899999988776665 5678999999999865322211 000
Q ss_pred hhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCC
Q 005979 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
.+.. +...+.+....+|+++||+|+.++++..+..++++++. .+.|+++|+||+|+.
T Consensus 101 --------------------~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 101 --------------------HWEQ-LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKL 157 (223)
T ss_dssp --------------------HHHH-HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGS
T ss_pred --------------------HHHH-HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccC
Confidence 0111 11222233444899999999999999988899999887 578999999999987
Q ss_pred ccchhh-----H-HHHHh-------cCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 317 RKGIMQ-----V-SEFWS-------LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 317 ~~~~~~-----~-~~~~~-------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
...... . ..+.. .+.+++++||++|.|+.+|++.|.+.++...
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 158 TRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 643211 1 11111 3347899999999999999999999887543
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=2.1e-20 Score=179.12 Aligned_cols=158 Identities=20% Similarity=0.149 Sum_probs=111.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.. ++ ..+.+|||||+.++..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~---------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ---------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHH----------
Confidence 5799999999999999999999654 2444445555555444443 44 3679999999987754432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++++|+|+++..+.+... |+..+.+ .++|+++|+||+|+...+..... .. +.+....+
T Consensus 73 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-----~~-~~~~~~~~ 142 (181)
T 3t5g_A 73 ----TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE-----EG-KALAESWN 142 (181)
T ss_dssp ----GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH-----HH-HHHHHHTT
T ss_pred ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH-----HH-HHHHHHhC
Confidence 2578899999999998865544433 4444433 37899999999999755443221 11 12222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
++++++||++|.|++++|..|.+.+...
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999998766543
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=9.5e-21 Score=180.68 Aligned_cols=159 Identities=15% Similarity=0.056 Sum_probs=110.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++... .....++++.+.....+...++ ..+.+|||||+.++..+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM----------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch-----------
Confidence 357999999999999999999997652 2233344445555555554332 58999999998765332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh-----CCc-EEEEEecccCCCCcchhhHHHHHHHHHHHHhc
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE-----GKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~-----~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~ 520 (666)
...+++.+|++++|+|++++.+.++. .|+..+... +.| +++|+||+|+...+.... +. ...+.+
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~-~~-~~~~~~---- 143 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP-EK-HLRFCQ---- 143 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH-HH-HHHHHH----
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH-HH-HHHHHH----
Confidence 23468999999999999987555444 355555542 566 899999999965332221 11 111222
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
..+++++++||++|.|++++|+.|.+.+.
T Consensus 144 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp HHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22478999999999999999999987654
No 49
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=181.17 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=113.1
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|||||||+|+|++... .....++++.+.....+.. ++. .+.+|||||+.++.. .
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~----------~ 88 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGG----------W 88 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGH----------H
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchh----------h
Confidence 3457999999999999999999986542 2345566677666655554 443 678999999865321 1
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
....+++.+|++|+|+|+++..+.... .|+..+.. .++|+|+|+||+|+...+.... ++. +.+...
T Consensus 89 ---~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~-----~~~a~~ 159 (195)
T 3cbq_A 89 ---LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL-EEG-----RHLAGT 159 (195)
T ss_dssp ---HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH-HHH-----HHHHHH
T ss_pred ---hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH-HHH-----HHHHHH
Confidence 122467899999999999886554443 35555554 2789999999999976443321 111 112222
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+++++++||++|.|++++|..|.+.+..
T Consensus 160 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 160 LSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred hCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999876644
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.4e-20 Score=181.05 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=112.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ...+..|++.......+. ..+..+.+|||||+.++..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~------------ 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSL------------ 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGG------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhh------------
Confidence 4579999999999999999999976532 345556666555443332 13458999999998765432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++|+|+|++++.+.+... |+..+.+. ++|+++|+||+|+.+.+.... + .+.+. ....++
T Consensus 89 --~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~-~----~~~~~-~~~~~~ 160 (192)
T 2fg5_A 89 --APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPL-K----DAKEY-AESIGA 160 (192)
T ss_dssp --THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-H----HHHHH-HHTTTC
T ss_pred --hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH-H----HHHHH-HHHcCC
Confidence 234788999999999998875544433 55666554 789999999999964332221 1 12222 223357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999997643
No 51
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=2.6e-20 Score=177.94 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=105.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC--CceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+...+ ...+.+|||||+.++..+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL----------- 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh-----------
Confidence 45799999999999999999999765 2333444555555555555422 247899999998665332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
...+++.+|++|+|+|++++.+.++.. |+..+.. .++|+++|+||+|+.........+ ...+...
T Consensus 75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~----~~~~~~~ 147 (182)
T 1ky3_A 75 ---GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK----SAQELAK 147 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH----HHHHHHH
T ss_pred ---hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH----HHHHHHH
Confidence 223678999999999998875544433 4444443 468999999999996432211111 1222222
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.....+++++||++|.|++++|+.|.+.+.+
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2456889999999999999999999876543
No 52
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.9e-20 Score=176.82 Aligned_cols=157 Identities=22% Similarity=0.191 Sum_probs=108.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~----------- 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT----------- 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhH-----------
Confidence 4799999999999999999999765 33445566666665555554 44 378999999987654332
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+... .... +. ...+.+. .++
T Consensus 70 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~-~~-~~~~~~~----~~~ 139 (170)
T 1g16_A 70 ---TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTA-DQ-GEALAKE----LGI 139 (170)
T ss_dssp ---HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSCH-HH-HHHHHHH----HTC
T ss_pred ---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccCH-HH-HHHHHHH----cCC
Confidence 3367899999999999886554443 355555553 7899999999999432 2211 11 1122222 246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|++++|..|.+...+
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999877654
No 53
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.83 E-value=2.4e-20 Score=183.10 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=113.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+++|++.. ......+++.+.....+.. ++. .+.+|||||+.++..+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~--------- 96 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRP--------- 96 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGG---------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhHHHHH---------
Confidence 35899999999999999999999654 2445556666666666654 555 456999999977654321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDV 514 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~l 514 (666)
.+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+...... .+.. ....
T Consensus 97 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~ 169 (204)
T 4gzl_A 97 -----LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT--IEKLKEKKLTPITYPQG 169 (204)
T ss_dssp -----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHH--HHHHHHTTCCCCCHHHH
T ss_pred -----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhh--hhhhhccccccccHHHH
Confidence 267899999999999987766665 366777766 8999999999999754321 1100 1122
Q ss_pred HHHHhcCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 515 REKLRALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 515 ~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.......+..+++++||++|.|++++|+.|.+
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 23333445567999999999999999999875
No 54
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=3.7e-20 Score=179.77 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=112.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. + ...+.+|+.+.....+.. ++. .+.+|||||+.++..+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 89 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE-I-PTAYVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYDRLRP--------- 89 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGG---------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC-C-CCccCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHHHHhH---------
Confidence 45799999999999999999999765 2 334444555544444443 443 569999999877654331
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++++|+|++++.+..+. .|+..+... ++|+++|+||+|+.......... +...+.....+.
T Consensus 90 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~ 161 (194)
T 3reg_A 90 -----LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTK---QEGDDLCQKLGC 161 (194)
T ss_dssp -----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCH---HHHHHHHHHHTC
T ss_pred -----hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccH---HHHHHHHHhcCC
Confidence 267899999999999987666663 466666655 68999999999997532111111 111222222233
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+++++||++|.|++++|+.|.+.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 339999999999999999999876543
No 55
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=4.3e-20 Score=175.96 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=110.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 72 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSL----------- 72 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHH-----------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhh-----------
Confidence 35799999999999999999999764 33444555556655555554 44 38999999998654321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
...+++.+|++++|+|++++.+.++.. |+..+.. .++|+++|+||+|+... ... .+ .+.+...
T Consensus 73 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~-~~----~~~~~~~ 143 (177)
T 1wms_A 73 ---RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVS-TE----EAQAWCR 143 (177)
T ss_dssp ---HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSC-HH----HHHHHHH
T ss_pred ---HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-ccC-HH----HHHHHHH
Confidence 234678999999999999875544433 4555443 46899999999999632 221 11 2222333
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+.+++++||++|.|++++|+.|.+.+.
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 144 DNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 355689999999999999999999987654
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=180.88 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=110.8
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+.. ++. .+.+|||||+.++..+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------- 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRP-------- 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGG--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhH--------
Confidence 346899999999999999999999765 3455556666666555554 454 677999999987654431
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcc----------hhhHHHHHH
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQ 512 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~----------~~~~~~~~~ 512 (666)
.+++.+|++++|+|++++.+..+. .|+..+... ++|+++|+||+|+..... ..... +
T Consensus 87 ------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~---~ 157 (201)
T 2q3h_A 87 ------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPE---E 157 (201)
T ss_dssp ------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCH---H
T ss_pred ------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCH---H
Confidence 267899999999999987666665 366666664 799999999999965310 00000 1
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.........+..+++++||++|.|++++|+.|.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 158 AAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 11112222233489999999999999999999876544
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.83 E-value=3.3e-20 Score=175.23 Aligned_cols=156 Identities=20% Similarity=0.192 Sum_probs=109.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCc-ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.+|||||||+|+|++... ....+..|++.......+. ..+..+.+|||||+.++..+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~------------- 71 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRAL------------- 71 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcc-------------
Confidence 47999999999999999999997652 2234445555544433332 12358999999998765332
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|++++.+.++. .|+..+... ..|+++|+||+|+.+.+.... + .. ..+....+.+
T Consensus 72 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~-~-~~----~~~~~~~~~~ 144 (170)
T 1z0j_A 72 -APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME-R-DA----KDYADSIHAI 144 (170)
T ss_dssp -THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH-H-HH----HHHHHHTTCE
T ss_pred -cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH-H-HH----HHHHHHcCCE
Confidence 23478999999999999987655553 466666654 578999999999975433221 1 11 1222223578
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRR 166 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEeCCCCcCHHHHHHHHHHH
Confidence 9999999999999999998754
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=4e-20 Score=181.36 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=114.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~--------- 75 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITS--------- 75 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCG---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHH---------
Confidence 35799999999999999999999765 33444556666655555554 44 3799999999887654431
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++|+|+|++++.+.++.. |+..+... +.|+++|+||+|+...+.... + .. ..+....+
T Consensus 76 -----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~-~~~~~~~~ 144 (206)
T 2bcg_Y 76 -----SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY-D----VA-KEFADANK 144 (206)
T ss_dssp -----GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH-H----HH-HHHHHHTT
T ss_pred -----HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH-H----HH-HHHHHHcC
Confidence 2678999999999999876555543 55555543 589999999999976443221 1 11 12222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|..|.+.+.+
T Consensus 145 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877654
No 59
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=5.4e-20 Score=173.00 Aligned_cols=155 Identities=16% Similarity=0.046 Sum_probs=107.1
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
+||+++|.+|||||||+|+|++.... ...| |.......+.. ++..+.+|||||+.++.. ..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------------~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRP--------------LW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEEC-SSCEEEEEECCCCGGGHH--------------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEE-CCEEEEEEEcCCChhhHH--------------HH
Confidence 48999999999999999999976532 2333 22233334443 678999999999865321 23
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCE
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 526 (666)
..+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+..... .+++...+..........++
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcccccCccEEE
Confidence 3478999999999999987555443 34444443 2789999999999965422 12222222211122234679
Q ss_pred EEEeCccCCCHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++||++|.|++++|+.|.+..
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC
T ss_pred EEcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.83 E-value=4.7e-20 Score=173.28 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=108.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.... ....+++.+.....+.. ++. .+.+|||||+.++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~------------- 66 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFAS------------- 66 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHH-------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhhHH-------------
Confidence 368999999999999999999976532 23334444444444443 333 589999999865422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++++|+|++++.+.++. .++..+.+ .++|+++|+||+|+...+.... +. ...+.+. .+
T Consensus 67 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~~~~~----~~ 139 (167)
T 1kao_A 67 -MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS-SE-GRALAEE----WG 139 (167)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH-HH-HHHHHHH----HT
T ss_pred -HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH-HH-HHHHHHH----hC
Confidence 123467899999999999986554443 34444444 3799999999999965433221 11 1112222 25
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++++.|.+...+
T Consensus 140 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 140 CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 689999999999999999999876543
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=180.13 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=108.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----------- 93 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRT----------- 93 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHH-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHH-----------
Confidence 345799999999999999999999765 22333444445555555554 44 4899999999865422
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+++.+|++|+|+|++++.+.++. .|+..+.. .++|+++|+||+|+...+.... + ++.+.....+
T Consensus 94 ---~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~-~----~~~~~~~~~~ 165 (201)
T 2hup_A 94 ---ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSL-A----EAQSLAEHYD 165 (201)
T ss_dssp ---HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-H----HHHHHHHHTT
T ss_pred ---HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCH-H----HHHHHHHHcC
Confidence 234578999999999999886554443 35566655 3689999999999965333221 1 1222222233
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..+++++||++|.|++++|..|.+.+..
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2389999999999999999999876543
No 62
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=3e-20 Score=178.70 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=110.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.....+.+..|.+.. .+.. ++..+.+|||||+.++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~-~~~~l~i~Dt~G~~~~~~-------------- 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQS-QGFKLNVWDIGGQRKIRP-------------- 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEE-TTEEEEEEECSSCGGGHH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEE-CCEEEEEEECCCCHHHHH--------------
Confidence 457999999999999999999998765445555554432 2333 577999999999865422
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++++|+|++++.+.++. .++..+.. .++|+++|+||+|+...... +++.+.+..........
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 152 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVW 152 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCE
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCce
Confidence 234578999999999999987665543 24444432 47899999999999764321 11222111111122346
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++|||++|.|++++|++|.+..
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 153 QIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999997654
No 63
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=3.4e-20 Score=177.05 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=112.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~---------- 74 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR---------- 74 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH----------
Confidence 35799999999999999999999764 3445556666655555554 44 378899999987654321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
..+++.+|++++|+|+++..+.... .|+..+.. .++|+++|+||+|+...+.....+ ...+....
T Consensus 75 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~------~~~~~~~~ 144 (181)
T 2fn4_A 75 ----EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSE------ASAFGASH 144 (181)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHH------HHHHHHHT
T ss_pred ----HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH------HHHHHHHc
Confidence 2367889999999999886544433 34444422 378999999999996543322111 11222233
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 145 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 145 HVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999877654
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.5e-20 Score=176.19 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=105.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.+|||||||+|+|++... .....+.+... ....+.. .....+.+|||||+.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~-~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------------- 66 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPA-------------- 66 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHH--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcccc-EEEEEEECCEEEEEEEEECCCchhhHH--------------
Confidence 47999999999999999999997542 22222222211 1122222 1234789999999876422
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh-----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++++|+|++++.+.++. .++..+.+. ++|+++|+||+|+.+.+.....+ ...+.. ..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~--~~~~~~----~~~ 140 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE--AEALAR----TWK 140 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHH--HHHHHH----HHT
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHH--HHHHHH----HhC
Confidence 233467889999999999876444332 355555542 68999999999996543322111 111212 224
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|+.|.+....
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 789999999999999999999876543
No 65
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=4.1e-20 Score=177.98 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=110.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.......+..+. ....+.. ++..+.+|||||+.++....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~----~~~~~~~-~~~~~~~~Dt~G~~~~~~~~------------ 79 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGF----NIKTLEH-RGFKLNIWDVGGQKSLRSYW------------ 79 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSE----EEEEEEE-TTEEEEEEEECCSHHHHTTG------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCcc----ceEEEEE-CCEEEEEEECCCCHhHHHHH------------
Confidence 357999999999999999999997762222222222 2233443 67899999999986653322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|++++.+.++. .++..+.. .++|+++|+||+|+...... +++.+.+........+.
T Consensus 80 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 80 --RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHW 154 (186)
T ss_dssp --GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCE
T ss_pred --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCce
Confidence 2357899999999999987665553 35554443 37999999999999764321 11222211111123456
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|++++|+.|.+...+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 155 RIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999876654
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=9.3e-20 Score=178.51 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=113.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~--------- 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGV--------- 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCC---------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHH---------
Confidence 45799999999999999999999765 33344555566666556654 33 4789999999877654432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
.+++.+|++|+|+|++++.+.++.. |+..+.. .++|+++|+||+|+... .... + .......
T Consensus 76 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~-~----~~~~~~~ 144 (207)
T 1vg8_A 76 -----AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVAT-K----RAQAWCY 144 (207)
T ss_dssp -----GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCH-H----HHHHHHH
T ss_pred -----HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCH-H----HHHHHHH
Confidence 2578999999999998875544433 4444433 36899999999999742 2211 1 1222222
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+.+++++||++|.|++++|+.|.+...
T Consensus 145 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 145 SKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 255689999999999999999999987654
No 67
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=1.2e-19 Score=176.56 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC------------------------------
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG------------------------------ 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~------------------------------ 419 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSCEEEEEEEET-TC------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-CCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 46899999999999999999999875 33333444444544444443 22
Q ss_pred ---------ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-hCCc
Q 005979 420 ---------QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-EGKG 488 (666)
Q Consensus 420 ---------~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-~~~p 488 (666)
..+.||||||+.++..+ ...+++.+|++|+|+|++++.+.++.. |+..+.. .++|
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~--------------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p 149 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASI--------------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI 149 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTT--------------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE
T ss_pred ccccCccceeEEEEEECCCcHHHHHH--------------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc
Confidence 67999999998665322 334789999999999999876655543 5555554 4699
Q ss_pred EEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 489 CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 489 vIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++|+||+|+ ...... .+ .+.+.+.. .+++++++||++|.|++++|++|.+...
T Consensus 150 iilv~NK~D~-~~~~~~-~~----~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 150 IILVANKIDK-NKFQVD-IL----EVQKYAQD-NNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEEEECTTC-C-CCSC-HH----HHHHHHHH-TTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEECCCc-ccccCC-HH----HHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999993 322222 12 12222222 3579999999999999999999987654
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=5.6e-20 Score=175.79 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=110.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+...+ +..+.+|||||+.++..+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 77 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------------ 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh------------
Confidence 3479999999999999999999976532 23334344333333333322 348999999998765432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++|+|+|++++.+.+. ..|+..+... ++|+++|+||+|+...+.... + .+.+ +....++
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~----~~~~-~~~~~~~ 149 (181)
T 2efe_B 78 --APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA-E----DAQT-YAQENGL 149 (181)
T ss_dssp --THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH-H----HHHH-HHHHTTC
T ss_pred --hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH-H----HHHH-HHHHcCC
Confidence 2346789999999999988765443 3466666654 688999999999976443221 1 1122 2222357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|..|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997643
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.4e-20 Score=184.33 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=109.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||+++|.+|||||||+|+|++........+++++.+.....+.. ++. .+.+|||+|.... ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~----------~~-- 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGE----------NE-- 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHH----------HH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcch----------hh--
Confidence 35799999999999999999999765544555566666665555554 554 5688999997431 11
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
.....+++.+|++|+|||+++..+.+... |+..+.+ .++|+|||+||+||...+.....+ .+.++...
T Consensus 103 -~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e------~~~~a~~~ 175 (211)
T 2g3y_A 103 -WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE------GRACAVVF 175 (211)
T ss_dssp -HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH------HHHHHHHH
T ss_pred -hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHH------HHHHHHHc
Confidence 11223567899999999999865555543 5555543 278999999999996533332211 11222222
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++|||++|.||+++|+.|.+...
T Consensus 176 ~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 176 DCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987653
No 70
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=5.8e-20 Score=201.40 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=120.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccc------------------------------cCCCcceeeeEeEEEecCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV------------------------------SPISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~------------------------------~~~~gtT~d~~~~~~~~~~~ 419 (666)
..++|+++|++|+|||||+|+|++...... ...+|+|++.....+.. ++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence 457999999999999999999975432221 12368999988888875 77
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCC-------HHHHHHHHHHHHhCCc-EEE
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT-------EQDCRIAERIEQEGKG-CLI 491 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t-------~~d~~i~~~i~~~~~p-vIl 491 (666)
..+.||||||+.++ ...+..+++.||++|+|+|++++.. .+..+.+..+...++| +|+
T Consensus 95 ~~~~iiDTPGh~~f--------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKSF--------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHHH--------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 89999999998654 3345667899999999999999865 5777788888888998 999
Q ss_pred EEecccCCCCc-chhhHHHHHHHHHHHHhcCC-----CCCEEEEeCccCCCHHHHHH
Q 005979 492 VVNKWDTIPNK-NQQTATYYEQDVREKLRALD-----WAPIVYSTAIAGQSVDKIIV 542 (666)
Q Consensus 492 v~NK~Dl~~~~-~~~~~~~~~~~l~~~l~~~~-----~~~ii~vSAk~g~gv~~L~~ 542 (666)
|+||+|+.... .....+...+++...+...+ .++++++||++|.|++++++
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999996421 12233444555555554433 46899999999999999765
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.6e-20 Score=182.59 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=112.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~----------- 91 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSI----------- 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHH-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-----------
Confidence 45799999999999999999999764 33445556666666555554 44 37899999998654321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+...+.... ++ ... +....+
T Consensus 92 ---~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~-~~-~~~----~~~~~~ 162 (201)
T 2ew1_A 92 ---TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ-QR-AEE----FSEAQD 162 (201)
T ss_dssp ---HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH-HH-HHH----HHHHHT
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH-HH-HHH----HHHHcC
Confidence 33467899999999999886554443 355555543 689999999999965333221 11 111 222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..|.+.+.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 163 MYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986654
No 72
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.83 E-value=8.3e-20 Score=171.76 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=107.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|+|||||+|+|++... ...+.+++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~------------- 67 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAA------------- 67 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CHH-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhHH-------------
Confidence 47999999999999999999997652 334445555555444443 33 3789999999865422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++++|+|+++..+.... .|+..+... ++|+++|+||+|+...+.... ++. .+.... .+
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~----~~~~~~-~~ 140 (168)
T 1u8z_A 68 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV-EEA----KNRADQ-WN 140 (168)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH-HHH----HHHHHH-HT
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCH-HHH----HHHHHH-cC
Confidence 233478899999999999976544433 344555442 789999999999965433221 111 111111 24
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|++|.+...
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999986653
No 73
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=4.3e-20 Score=177.39 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=109.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+.++|+++|.+|||||||+|+|++.......+..|.+.. .+.. ++..+.+|||||+.++..+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~-~~~~~~i~Dt~G~~~~~~~~----------- 82 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVI-NNTRFLMWDIGGQESLRSSW----------- 82 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEE-TTEEEEEEEESSSGGGTCGG-----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEE-CCEEEEEEECCCCHhHHHHH-----------
Confidence 3457999999999999999999998765445555554432 3333 67899999999997764432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
..+++.+|++++|+|++++.+.++. .++..+.. .++|+++|+||+|+...... +++.+.+........+
T Consensus 83 ---~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~ 156 (181)
T 2h17_A 83 ---NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQ 156 (181)
T ss_dssp ---GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSC
T ss_pred ---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhCcccccCCc
Confidence 2367899999999999987666554 34544443 57999999999999653221 1122211111112234
Q ss_pred CCEEEEeCccCCCHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
++++++||++|.|++++|+.|.+
T Consensus 157 ~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 157 WHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHT
T ss_pred eEEEEccCCCCcCHHHHHHHHHh
Confidence 58999999999999999998863
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=3.3e-20 Score=179.41 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=109.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
+..++|+++|.+|||||||+|+|++.... ....++.+.+.....+... .+..+.||||||+.++..+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 88 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT---------- 88 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH----------
Confidence 34579999999999999999999976532 2222333333222233321 23489999999987765432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
..+++.+|++|+|+|++++.+.++. .|+..+... ++|+++|+||+|+...+.... +. ...+.+. .+
T Consensus 89 ----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~~~~~----~~ 158 (189)
T 2gf9_A 89 ----TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA-ED-GRRLADD----LG 158 (189)
T ss_dssp ----GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-HH-HHHHHHH----HT
T ss_pred ----HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCH-HH-HHHHHHH----cC
Confidence 2367899999999999886554443 366666664 789999999999965433221 11 1222222 24
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|+.|.+.+.
T Consensus 159 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 159 FEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 75
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=3.8e-20 Score=174.91 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=102.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|||||||+|+|++..... ...+.++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~------------ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW------------ 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh------------
Confidence 3689999999999999999998654332 23334455555555554 44 47889999998765321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++++|+|+++..+.+.. .|+..+... ++|+++|+||+|+.+.+..... . ...+....+
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-----~-~~~~~~~~~ 140 (169)
T 3q85_A 68 -LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLE-----E-GRHLAGTLS 140 (169)
T ss_dssp ---CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHH-----H-HHHHHHHTT
T ss_pred -hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHH-----H-HHHHHHHcC
Confidence 112257889999999999886544443 355555543 7899999999999654333221 1 122223335
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|+.+.+...
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 141 CKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEecCccCCCHHHHHHHHHHHHH
Confidence 79999999999999999999987654
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=5e-20 Score=179.14 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=108.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccc-cccccCCchhhHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKR-AAIASSGSTTEALS 447 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~-~~~~~~~~~~e~~~ 447 (666)
.+||+++|.+|||||||+|+|++........+++++.+.....+.. ++. .+.+|||+|.... ..+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~----------- 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWL----------- 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTT-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhH-----------
Confidence 4799999999999999999999765444555666666665555554 554 5688999997542 111
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
...+++.+|++++|+|+++..+.+... |+..+.+. ++|+|+|+||+|+...+.....+ ...++...
T Consensus 74 ---~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~------~~~~a~~~ 144 (192)
T 2cjw_A 74 ---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSE------GRAXAVVF 144 (192)
T ss_dssp ---GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHH------HHHHHHHT
T ss_pred ---HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHH------HHHHHHHh
Confidence 122678899999999999865555443 44555442 68999999999996533322111 12222233
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++|||++|.||+++|+.|.+...
T Consensus 145 ~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 145 DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.83 E-value=3.1e-20 Score=180.01 Aligned_cols=160 Identities=16% Similarity=0.066 Sum_probs=106.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccC---------CCcceeeeEeEEE-ec-CCCceEEEEEcCCCcccccccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSP---------ISGTTRDAIDTEF-TG-PEGQKFRLIDTAGIRKRAAIAS 438 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~---------~~gtT~d~~~~~~-~~-~~~~~~~liDTpG~~~~~~~~~ 438 (666)
..+||+++|.+|||||||++.+.+........ .+....+.....+ .. .....+.+|||||+.++..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-- 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS-- 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH--
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH--
Confidence 45799999999999999998887654322111 1111122221112 11 12337999999998765432
Q ss_pred CCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHH----HHHHH-----hCCcEEEEEecccCCCCcchhhHHH
Q 005979 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA----ERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATY 509 (666)
Q Consensus 439 ~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~----~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~ 509 (666)
...+++.+|++|+|+|++++.+.++...+ .++.+ .++|+++|+||+|+.....
T Consensus 91 ------------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~------ 152 (198)
T 3t1o_A 91 ------------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP------ 152 (198)
T ss_dssp ------------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC------
T ss_pred ------------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC------
Confidence 23478999999999999976555544433 33333 4789999999999965422
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 510 YEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 510 ~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+++.+.+...+..+++++||++|.|++++|+.|.+...+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 153 -VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 1223334444443399999999999999999999876543
No 78
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.83 E-value=2.5e-20 Score=192.22 Aligned_cols=163 Identities=24% Similarity=0.338 Sum_probs=114.4
Q ss_pred HHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh-HHHHH-hcCCCCeeecccC
Q 005979 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAIS 340 (666)
Q Consensus 263 ~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-~~~~~-~~~~~~i~iSa~~ 340 (666)
.+++.+.+.++|+|++|+|++.+.+.....+.+++ .++|+++|+||+|+.+..... ..+++ ..|++++++||.+
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~ 89 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVN 89 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTT
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 47788999999999999999998776655566655 479999999999998743322 23444 4578899999999
Q ss_pred CCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc
Q 005979 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 341 g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
|.|+.+|++.+.+.++...............++|+++|.||||||||+|+|++.....+++.||+|++.....+ +.
T Consensus 90 ~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~ 165 (282)
T 1puj_A 90 GQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GK 165 (282)
T ss_dssp CTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CC
Confidence 99999999998887764321000000123457899999999999999999999988899999999998754322 45
Q ss_pred eEEEEEcCCCccc
Q 005979 421 KFRLIDTAGIRKR 433 (666)
Q Consensus 421 ~~~liDTpG~~~~ 433 (666)
.+.||||||+...
T Consensus 166 ~~~l~DtpG~~~~ 178 (282)
T 1puj_A 166 ELELLDTPGILWP 178 (282)
T ss_dssp TEEEEECCCCCCS
T ss_pred CEEEEECcCcCCC
Confidence 7999999999754
No 79
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=2.9e-20 Score=180.17 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=109.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|||||||+|+|++.... ....++++.+.....+.. ++ ..+.||||||+.++..+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 87 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSIT--------- 87 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCC---------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhH---------
Confidence 44579999999999999999999976532 233333444444344443 33 478999999987764432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
..+++.+|++|+|+|++++.+.++. .|+..+... ++|+++|+||+|+...+.... ++ ...+ ....
T Consensus 88 -----~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-~~-~~~~----~~~~ 156 (191)
T 2a5j_A 88 -----RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR-EE-GEAF----AREH 156 (191)
T ss_dssp -----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-HH-HHHH----HHHH
T ss_pred -----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH-HH-HHHH----HHHc
Confidence 2477899999999999886555443 355666553 789999999999965333221 11 1111 1222
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++++||++|.|++++|..|.+...
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 157 GLIFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999976543
No 80
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=8.9e-20 Score=177.69 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=108.5
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+.+||+++|.+|||||||+|++.+............+.......+.......+.+|||||+.++....-
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 87 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF---------- 87 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh----------
Confidence 4568999999999999999999887533221111122222222222212345899999999977543210
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-----CCcEEEEEecccCCCCcch-hhHHHHHHHHHHHHhc--
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQ-QTATYYEQDVREKLRA-- 520 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~-~~~~~~~~~l~~~l~~-- 520 (666)
....+++.+|++|+|+|+++++......+..++.+. +.|+++|+||+|+...... .....+.....+.+..
T Consensus 88 -~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 88 -DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp -CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 003478899999999999987333334455555543 7899999999999763211 1112233333444444
Q ss_pred --CCCCCEEEEeCccCCCHHHHHHHHHHH
Q 005979 521 --LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 521 --~~~~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
..+++++++||++ .||+++|..|.+.
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp CTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 4567899999999 9999999998753
No 81
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=4.9e-20 Score=173.86 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=106.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc-ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.+|||||||+|+|++..... ..+..+++.......+. ..+..+.+|||||+.++..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~------------- 71 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSL------------- 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGG-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhhhh-------------
Confidence 4799999999999999999999754322 22333444433332221 12458999999998765322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++++|+|++++.+.++. .|+..+... +.|+++|+||+|+...+.... + ...+ +....+++
T Consensus 72 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~-~----~~~~-~~~~~~~~ 144 (170)
T 1r2q_A 72 -APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF-Q----EAQS-YADDNSLL 144 (170)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-H----HHHH-HHHHTTCE
T ss_pred -hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCH-H----HHHH-HHHHcCCe
Confidence 23478899999999999886554443 355555553 688999999999965433221 1 1111 22224578
Q ss_pred EEEEeCccCCCHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998754
No 82
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=5.8e-20 Score=177.55 Aligned_cols=159 Identities=18% Similarity=0.077 Sum_probs=110.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|.+|||||||+|+|++.......+..+. ....+.. ++..+.+|||||+.++..+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~----------- 84 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV----NLETLQY-KNISFEVWDLGGQTGVRPYWR----------- 84 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTC----CEEEEEE-TTEEEEEEEECCSSSSCCCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCce----EEEEEEE-CCEEEEEEECCCCHhHHHHHH-----------
Confidence 357999999999999999999987654332232222 2223443 577999999999987655432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
.+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+...... +++.+.+........+.
T Consensus 85 ---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 85 ---CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTW 158 (189)
T ss_dssp ---SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCE
T ss_pred ---HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCce
Confidence 2568999999999999876655433 4444433 37999999999999764321 12222222112222345
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|++++++.|.+...+
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 159 TIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCccCHHHHHHHHHHHHHh
Confidence 89999999999999999999877654
No 83
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=179.94 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=108.6
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec-CCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
+..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.. ..+..+.||||||+.++..+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI----------- 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Confidence 345799999999999999999999765332 22222222222222322 12457899999999765332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|++++.+.... .|+..+... ++|+++|+||+|+...+.... + ... .+....+
T Consensus 91 ---~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~-~~~~~~~ 161 (193)
T 2oil_A 91 ---TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT-E----EAR-MFAENNG 161 (193)
T ss_dssp ---HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH-H----HHH-HHHHHTT
T ss_pred ---hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH-H----HHH-HHHHHcC
Confidence 23468999999999999886554332 355555543 789999999999965433221 1 111 2222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..|.+...
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986643
No 84
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.7e-20 Score=207.08 Aligned_cols=162 Identities=29% Similarity=0.377 Sum_probs=116.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|+||||||||+|+|++.....+.+.+|+|++.....+. +.+..+.||||||+... ..........+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~------~~~~~~~~~~~ 95 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIG------DEPFLAQIRQQ 95 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECT-TCSSCCEEECCCC------------CCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEE-ECCceEEEEECCCCCCc------chHHHHHHHHH
Confidence 479999999999999999999998877889999999999888876 47889999999998632 12234555667
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
+..+++.||++|+|+|+.++++..+..+++++.+.++|+|+|+||+|+..... ... .+...+...++++|
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~---------~~~-e~~~lg~~~~~~iS 165 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NIY-DFYSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------------------C-CSGGGSSSSEEECC
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh---------hHH-HHHHcCCCceEEee
Confidence 78899999999999999999999999999999889999999999999864311 011 11223344678999
Q ss_pred CccCCCHHHHHHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~~~ 549 (666)
|++|.|+.+|++.+.+...
T Consensus 166 A~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGG
T ss_pred cccccchHHHHHHHHhhcc
Confidence 9999999999999987654
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=177.67 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=109.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++...+..... .|.......+.. ++..+.+|||||+.++..+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~------------ 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLW------------ 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEEC-SSCEEEEEEECCSTTTGGGG------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEE-CCEEEEEEECCCCHHHHHHH------------
Confidence 457999999999999999999997753332222 233334445554 67899999999987764432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHH--hc
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKL--RA 520 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l--~~ 520 (666)
..+++.+|++|+|+|++++.+.++. .++..+.. .++|+++|+||+|+...... ++ +.+.+ ..
T Consensus 85 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~----~~~~~~~~~ 155 (190)
T 2h57_A 85 --EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS---VK----VSQLLCLEN 155 (190)
T ss_dssp --GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH---HH----HHHHHTGGG
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH---HH----HHHHhChhh
Confidence 2367899999999999886444443 34444444 37899999999999753221 11 22222 22
Q ss_pred --CCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 521 --LDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 521 --~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
..+.+++++||++|.|++++|+.|.+.+.
T Consensus 156 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 156 IKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 13568999999999999999999987654
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=9.5e-21 Score=184.99 Aligned_cols=158 Identities=23% Similarity=0.195 Sum_probs=102.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-cccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.... ...+..|++... ..+... ....+.||||||+.++..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQERFRS------------ 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEETTEEEEEEEEECTTCTTCHH------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEECCEEEEEEEEECCCCcchhh------------
Confidence 4589999999999999999999976521 223333333332 233321 234799999999865422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCC------CcchhhHHHHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIP------NKNQQTATYYEQDVREK 517 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~------~~~~~~~~~~~~~l~~~ 517 (666)
....+++.+|++|+|+|++++.+.++.. |+..+... ++|+++|+||+|+.. .+... ..... .
T Consensus 93 --~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~--~~~~~----~ 164 (199)
T 2p5s_A 93 --IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP--GHFGE----K 164 (199)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCC--HHHHH----H
T ss_pred --hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccC--HHHHH----H
Confidence 2345788999999999998876555433 55555543 789999999999952 11111 11111 1
Q ss_pred HhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 518 LRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 518 l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+....+++++++||++|.|++++|..|.+...
T Consensus 165 ~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 165 LAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22222578999999999999999999986543
No 87
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=1e-19 Score=174.61 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=108.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. + .....+++.+.....+.. ++. .+.+|||||+.++..+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----------- 82 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI-F-VDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----------- 82 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC-C-CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH-----------
Confidence 45799999999999999999999653 2 233333444444444443 444 4667999998765432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
...+++.+|++++|+|++++.+.+... |+..+.. .++|+++|+||+|+...+.....+ ...+.+. .
T Consensus 83 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~--~~~~~~~----~ 153 (183)
T 3kkq_A 83 ---REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ--GKEMATK----Y 153 (183)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHH--HHHHHHH----H
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHH--HHHHHHH----h
Confidence 124678999999999999865544332 4444443 478999999999997644332211 1122222 2
Q ss_pred CCCEEEEeCc-cCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAI-AGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk-~g~gv~~L~~~i~~~~~ 549 (666)
+++++++||+ +|.|++++|+.|.+.+.
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 4789999999 99999999999987654
No 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=182.01 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=109.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ..+..++.+.....+... .+..+.||||||+.++..+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 90 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY---------- 90 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG----------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH----------
Confidence 3579999999999999999999976533 333344444433333321 245789999999887655432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++++|+|+++..+.+... |+..+.. .++|+++|+||+|+...+.....+ .. .+....+
T Consensus 91 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~--~~----~~~~~~~ 160 (201)
T 3oes_A 91 ----SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE--GK----KLAESWG 160 (201)
T ss_dssp ----GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH--HH----HHHHHHT
T ss_pred ----HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHH--HH----HHHHHhC
Confidence 2678999999999999765544433 4444443 378999999999997544332211 11 2222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|..|.+.+..
T Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 161 ATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999876654
No 89
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.82 E-value=6e-20 Score=176.72 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=110.1
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.. ....+++++.+.....+.. ++. .+.+|||||+.++..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------------ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------ 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH------------
Confidence 4799999999999999999999765 3455566666666555554 444 5778999998765432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++++|+|+++..+.++.. |+..+.. .++|+++|+||+|+..... . .+ ....+.+. .+
T Consensus 69 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~-~~-~~~~~~~~----~~ 139 (189)
T 4dsu_A 69 --RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV-D-TK-QAQDLARS----YG 139 (189)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS-C-HH-HHHHHHHH----HT
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc-C-HH-HHHHHHHH----cC
Confidence 223678899999999999865544433 4455544 2789999999999974321 1 11 11222222 24
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+++++||++|.|++++|..|.+.+..
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877653
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.82 E-value=6.5e-20 Score=179.19 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=101.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|||||||+|+|++.......+..+.+ ...+.. ++..+.+|||||+.++..++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~-~~~~l~i~Dt~G~~~~~~~~~------------ 87 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTI-AGMTFTTFDLGGHIQARRVWK------------ 87 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEE-TTEEEEEEEECC----CCGGG------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEE-CCEEEEEEECCCcHhhHHHHH------------
Confidence 469999999999999999999976543333333333 234443 568999999999987654431
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-----
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~----- 520 (666)
.+++.+|++++|+|++++.+.++. .++..+.+ .++|+++|+||+|+..... .+ ++.+.+..
T Consensus 88 --~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~----~~~~~~~~~~~~~ 158 (198)
T 1f6b_A 88 --NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS---EE----RLREMFGLYGQTT 158 (198)
T ss_dssp --GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC---HH----HHHHHHTCTTTCC
T ss_pred --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC---HH----HHHHHhCcccccc
Confidence 267899999999999987655543 34554443 4799999999999965211 11 22333321
Q ss_pred -----------CCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 521 -----------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 521 -----------~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
....++++|||++|.|++++|++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 159 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 23468999999999999999999864
No 91
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=3.9e-20 Score=178.36 Aligned_cols=163 Identities=26% Similarity=0.407 Sum_probs=118.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|++.. +.+...+++|.+.....+.. ++..+.+|||||+.++.... .... .
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~-----~~~~-~-- 76 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS-----IDEI-I-- 76 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS-----HHHH-H--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCcccccc-----HHHH-H--
Confidence 4699999999999999999999764 56778899999888777775 67899999999998763211 1111 1
Q ss_pred HHHHH--hhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEE
Q 005979 451 AFRAI--RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (666)
Q Consensus 451 ~~~~i--~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 528 (666)
...++ ..+|++++|+|+++. .....|+..+.+.++|+++|+||+|+........ ..+.+.+.+ ++++++
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~----~~~~~~ 147 (188)
T 2wjg_A 77 ARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEI---DVDKLEKIL----GVKVVP 147 (188)
T ss_dssp HHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCC---CHHHHHHHH----TSCEEE
T ss_pred HHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchH---HHHHHHHHh----CCCeEE
Confidence 12233 359999999999863 4445577777778999999999999854221110 011222222 468999
Q ss_pred EeCccCCCHHHHHHHHHHHHHhcc
Q 005979 529 STAIAGQSVDKIIVAAEMVDKERS 552 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~~~~ 552 (666)
+||++|.|++++|+.|.+......
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EEecCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999988776543
No 92
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=7.6e-20 Score=176.60 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=110.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeE-eEEEecCC----------CceEEEEEcCCCcccccccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI-DTEFTGPE----------GQKFRLIDTAGIRKRAAIAS 438 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~-~~~~~~~~----------~~~~~liDTpG~~~~~~~~~ 438 (666)
..++|+++|.+|||||||+|+|++... .....++++.+.. ...+...+ ...+.+|||||+.++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--- 85 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS--- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH---
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH---
Confidence 357999999999999999999997642 2233344444443 23333322 23899999999865422
Q ss_pred CCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHH
Q 005979 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 439 ~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
....+++.+|++|+|+|++++.+.++. .|+..+.. .++|+++|+||+|+...+.... +. ...
T Consensus 86 -----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~ 152 (195)
T 3bc1_A 86 -----------LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE-EE-ARE 152 (195)
T ss_dssp -----------HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH-HH-HHH
T ss_pred -----------HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH-HH-HHH
Confidence 244578999999999999887655553 35555554 4789999999999965333221 11 111
Q ss_pred HHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+.+ ..+++++++||++|.|++++|..|.+.+.+
T Consensus 153 ~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 153 LAE----KYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHH----HHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHH----HcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 222 124689999999999999999999876543
No 93
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=1.2e-19 Score=175.15 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=108.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..+||+++|.+|||||||+|+|++.... ....+ | .+.....+.. ++. .+.+|||||+.++ .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~-t-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------~--- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP-E-GGRFKKEIVV-DGQSYLLLIRDEGGPPEL----------Q--- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT-T-CEEEEEEEEE-TTEEEEEEEEECSSSCCH----------H---
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC-C-cceEEEEEEE-CCEEEEEEEEECCCChhh----------h---
Confidence 4579999999999999999999976532 22222 2 2333344443 453 6788999998542 1
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHH-HHHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d-~~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
+++.+|++++|+|+++..+.++ ..|+..+... +.|+++|+||+|+......... .+...+.....+
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~---~~~~~~~~~~~~ 152 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID---DSRARKLSTDLK 152 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSC---HHHHHHHHHHTT
T ss_pred ------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccC---HHHHHHHHHHcC
Confidence 6788999999999998776666 4466666653 6899999999999532111111 112223333444
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.++++++||++|.||+++|..|.+...+
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999876544
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.7e-20 Score=177.07 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=112.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. + ...+.+|+.+.....+.. ++ ..+.+|||||+.++..+..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~--------- 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA-F-PEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRP--------- 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-C-CCSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTTTGG---------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhHHHH---------
Confidence 35799999999999999999999764 2 344455555555555554 44 4789999999987654321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcch----------hhHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ----------QTATYYEQD 513 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~----------~~~~~~~~~ 513 (666)
.+++.+|++++|+|++++.+.+.. .|+..+.+. ++|+++|+||+|+...... ... .++
T Consensus 85 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~ 156 (194)
T 2atx_A 85 -----LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPIC---VEQ 156 (194)
T ss_dssp -----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCC---HHH
T ss_pred -----HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccC---HHH
Confidence 257899999999999987655554 467777776 8999999999999753210 000 111
Q ss_pred HHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+.....+..+++++||++|.|++++|+.|.+..
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 12222222334899999999999999999997654
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.82 E-value=3.6e-20 Score=174.60 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=110.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+...+ ...+.+|||||+.++..+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT----------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH-----------
Confidence 35799999999999999999999764 3333445555555555554422 3389999999987654332
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..+++.+|++++|+|++++.+.++. .|+..+... +.|+++|+||+|+...+.... ++. ..+.+. .+++
T Consensus 72 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~-~~~-~~~~~~----~~~~ 142 (168)
T 1z2a_A 72 ---KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN-EEA-EGLAKR----LKLR 142 (168)
T ss_dssp ---HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH-HHH-HHHHHH----HTCE
T ss_pred ---HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCH-HHH-HHHHHH----cCCe
Confidence 2367899999999999886544443 245555443 799999999999975433211 111 112221 2468
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++++.|.+.+
T Consensus 143 ~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 143 FYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997654
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=1.6e-19 Score=173.23 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.. ++ ..+.||||||+.++..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------------ 81 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAA------------ 81 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHH------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEE-CCEEEEEEEEECCCCcccHH------------
Confidence 34799999999999999999999765 2344555555555554543 44 3789999999865422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+++.+|++++|+|+++..+.+.. .|+..+... ++|+++|+||+|+...+.... + ++.+.+.. .
T Consensus 82 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~~~~~~-~ 153 (187)
T 2a9k_A 82 --IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV-E----EAKNRAEQ-W 153 (187)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCH-H----HHHHHHHH-T
T ss_pred --HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH-H----HHHHHHHH-c
Confidence 233478899999999999876544333 344555442 789999999999965433221 1 12222222 3
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++++||++|.|++++|+.|.+...+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999876543
No 97
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=7e-20 Score=174.47 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=111.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~----------- 80 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLI----------- 80 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGS-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHH-----------
Confidence 3799999999999999999999664 33445566666766666654 44 379999999987654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|++++.+.+.. .|+..+.. .++|+++|+||+|+...+.... +... .... ..++
T Consensus 81 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~----~~~~-~~~~ 151 (179)
T 2y8e_A 81 ---PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-EEGE----RKAK-ELNV 151 (179)
T ss_dssp ---HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH-HHHH----HHHH-HHTC
T ss_pred ---HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH-HHHH----HHHH-HcCC
Confidence 2467899999999999876443333 34454444 3789999999999975433221 1111 1111 1247
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.|.+.+
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987543
No 98
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=2.1e-20 Score=194.93 Aligned_cols=166 Identities=28% Similarity=0.349 Sum_probs=125.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCc-cccccccCCchhhHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~e~~~~~~ 450 (666)
.+|+++|+||||||||+|+|++.....+++.+++|++.....+. .++..+.+|||||+. +... .+...+...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~~~------~l~~~~~~~ 81 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEKR------AINRLMNKA 81 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHHH------HHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE-ECCeeEEEEECcCCCccchh------hHHHHHHHH
Confidence 57999999999999999999998877788899999988776665 367799999999986 3210 112222223
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
+..+++.+|++++|+|+++ ++..+..+++.+...++|+|+|+||+|+.... .. +.+.+.+.....+..+++++|
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~--~~---~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK--AD---LLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH--HH---HHHHHHHHHTTSCCSEEEECC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccH--HH---HHHHHHHHHHhcCcCceEEEE
Confidence 3456788999999999988 89888888888777789999999999996521 11 122222222333445799999
Q ss_pred CccCCCHHHHHHHHHHHHHh
Q 005979 531 AIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 531 Ak~g~gv~~L~~~i~~~~~~ 550 (666)
|++|.|+++|++.|.+...+
T Consensus 156 A~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCCB
T ss_pred CCCCCCHHHHHHHHHHhCCc
Confidence 99999999999999876543
No 99
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.82 E-value=5.7e-20 Score=176.71 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=112.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.+|||||+.++..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------------ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRS------------ 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHH------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHH------------
Confidence 35799999999999999999999765 33444555666655555554 44 4789999999865422
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
....+++.+|++|+|+|++++.+.++.. |+..+.. .++|+++|+||+|+...+.... + +.. .+....+
T Consensus 75 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~-~~~~~~~ 146 (186)
T 2bme_A 75 --VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF-L----EAS-RFAQENE 146 (186)
T ss_dssp --HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-H----HHH-HHHHHTT
T ss_pred --HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-H----HHH-HHHHHcC
Confidence 2344678999999999999865544433 4444444 4789999999999965333221 1 111 1222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..|.+...
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986543
No 100
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=3.4e-20 Score=188.76 Aligned_cols=158 Identities=25% Similarity=0.324 Sum_probs=118.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|+++|.+|||||||+|+|+|.+ ..+++.||+|.+...+.+.+++..+.+|||||+..........
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~------------ 68 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGI------------ 68 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCC------------
Confidence 689999999999999999999987 6788999999999999999999999999999998644310000
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
.... ..+...+ ..+|++++|+|++. ......+..++.. .+.|+++|+||+|+......
T Consensus 69 -------------~~~e---~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 69 -------------SQDE---QIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp -------------CHHH---HHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTC
T ss_pred -------------CHHH---HHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCc
Confidence 0001 1222333 78999999999985 2333455666665 58999999999997643211
Q ss_pred --hHH-HHHhcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 322 --QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 322 --~~~-~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
... -...+|.+++++||++|.|+++|++.|.+.
T Consensus 129 ~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 SIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 111 123467899999999999999999999765
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.82 E-value=1.2e-19 Score=175.93 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=107.5
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
..+|+++|.+|||||||+|+|++.......+..+.+ ...+.. ++..+.+|||||+.++..+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~~------------- 84 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAI-GNIKFTTFDLGGHIQARRLW------------- 84 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEE-TTEEEEEEECCCSGGGTTSG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEE-CCEEEEEEECCCCHHHHHHH-------------
Confidence 469999999999999999999976644333333332 334444 67899999999997764432
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-----
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~----- 520 (666)
..+++.+|++++|+|++++.+.+... ++..+.+ .++|+++|+||+|+..... .+ ++.+.+..
T Consensus 85 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~----~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 85 -KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS---EA----ELRSALGLLNTTG 156 (190)
T ss_dssp -GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HH----HHHHHTTCSSCCC
T ss_pred -HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC---HH----HHHHHhCCccccc
Confidence 12568999999999999876655433 4444443 4799999999999965211 11 23333322
Q ss_pred ------CCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 521 ------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 521 ------~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
...++++++||++|.|++++|+.|.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp ---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 24568999999999999999999864
No 102
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=1.1e-19 Score=173.61 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=105.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.+||+++|.+|||||||+|+|++..... ..+ |+.+.....+.. ++ ..+.+|||||+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKKEMLV-DGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEEEEEE-TTEEEEEEEEECSSSCC----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEE-CCEEEEEEEEECCCCch----------------
Confidence 4799999999999999999999765432 222 333333344443 44 3689999999743
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh------CCcEEEEEecccCCC--CcchhhHHHHHHHHHHHHh
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE------GKGCLIVVNKWDTIP--NKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~------~~pvIlv~NK~Dl~~--~~~~~~~~~~~~~l~~~l~ 519 (666)
..+++.+|++|+|+|++++.+.++.. |+.++... ++|+++|+||+|+.. .+.... + ...+...
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-~----~~~~~~~ 138 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-A----RARALXA 138 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH-H----HHHHHHH
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH-H----HHHHHHH
Confidence 23678999999999999876655554 44445442 689999999999942 222211 1 1122222
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+.+++++||++|.|++++|+.|.+...
T Consensus 139 ~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 139 DMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred hhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 334578999999999999999999986643
No 103
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=7.6e-20 Score=174.24 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=107.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+... ....+.+|||||+.++..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 79 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------------- 79 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh-------------
Confidence 3579999999999999999999976532 2222222223222233321 234789999999865422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++++|+|++++.+.++.. |+..+.. .++|+++|+||+|+...+.... + .+.+.+. ..++
T Consensus 80 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~----~~~~~~~-~~~~ 152 (179)
T 1z0f_A 80 -VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY-E----EAKQFAE-ENGL 152 (179)
T ss_dssp -HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-H----HHHHHHH-HTTC
T ss_pred -hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-H----HHHHHHH-HcCC
Confidence 2345789999999999999875554443 5555554 4789999999999965433221 1 1122222 2357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.|.+..
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 153 LFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987654
No 104
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=4.4e-20 Score=181.90 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=113.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+++|++.. + ...+.+|+.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK-F-PTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSRLRP--------- 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC--C---------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHHHHH---------
Confidence 35799999999999999999999664 2 334445555555545544 44 3899999999987654432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcch-------hhHHHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ-------QTATYYEQDVRE 516 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~-------~~~~~~~~~l~~ 516 (666)
.+++.+|++|+|+|++++.+.++. .|+..+... ++|+++|+||+|+...... ...+ ...+
T Consensus 76 -----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~----~~~~ 146 (212)
T 2j0v_A 76 -----LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITST----QGEE 146 (212)
T ss_dssp -----GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHH----HHHH
T ss_pred -----hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHH----HHHH
Confidence 267899999999999987665554 466777665 8999999999999654221 0011 1122
Q ss_pred HHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 517 ~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.....+..+++++||++|.|++++|+.|.+.+..
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 2222233589999999999999999999877654
No 105
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=7.4e-20 Score=180.07 Aligned_cols=157 Identities=22% Similarity=0.193 Sum_probs=112.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------- 85 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI----------- 85 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------
Confidence 45799999999999999999999764 34455666666666556654 45 47999999998765432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+.. +.... +. ...+.+. .+
T Consensus 86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~-~~-~~~~~~~----~~ 155 (213)
T 3cph_A 86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTA-DQ-GEALAKE----LG 155 (213)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSCH-HH-HHHHHHH----HT
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-cccCH-HH-HHHHHHH----cC
Confidence 23477899999999999886544443 355555553 789999999999943 22211 11 1122222 24
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++++||++|.|++++|..|.+.+.
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999986543
No 106
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=180.80 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=106.5
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~---------- 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSV---------- 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHH----------
Confidence 345899999999999999999999765 33344455555554445544 44 48999999998665332
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
...+++.+|++|+|+|++++.+.++.. |+..+.. .++|+++|+||+|+...+.... .+ .. .+....
T Consensus 91 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~----~~-~~~~~~ 160 (200)
T 2o52_A 91 ----TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF-LE----AS-RFAQEN 160 (200)
T ss_dssp ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH-HH----HH-HHHHHT
T ss_pred ----HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH-HH----HH-HHHHHc
Confidence 234788999999999999865544433 5555544 3789999999999965433221 11 11 122223
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++++||++|.|++++|..|.+...
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999986543
No 107
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=7.7e-20 Score=175.51 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=110.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+.. ++. .+.+|||||+.++..+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~---------- 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRP---------- 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTTGG----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHHHHHH----------
Confidence 47999999999999999999996542 233444554444444443 443 677999999977644321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDVR 515 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~l~ 515 (666)
.+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+.+.... .+.+ .....
T Consensus 72 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~ 145 (186)
T 1mh1_A 72 ----LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT--IEKLKEKKLTPITYPQGL 145 (186)
T ss_dssp ----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHH--HHHHHHTTCCCCCHHHHH
T ss_pred ----HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchh--hhhhcccccccCCHHHHH
Confidence 257899999999999987666665 366777665 8999999999999653210 0000 01111
Q ss_pred HHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 516 EKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 516 ~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
......+..+++++||++|.|++++|+.|.+...
T Consensus 146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 2222233348999999999999999999986653
No 108
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=7.7e-20 Score=178.78 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=108.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+... .+..+.||||||+.++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT------------- 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc-------------
Confidence 3579999999999999999999976532 2222333333332333321 234899999999865422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
....+++.+|++|+|+|++++.+.+.. .|+..+.. .++|+++|+||+|+...+.... +. ...+.+. .++
T Consensus 73 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~-~~~~~~~----~~~ 145 (203)
T 1zbd_A 73 -ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS-ER-GRQLADH----LGF 145 (203)
T ss_dssp -HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH-HH-HHHHHHH----HTC
T ss_pred -hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH-HH-HHHHHHH----CCC
Confidence 234478899999999999886554443 35566655 3789999999999976443221 11 1122222 246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|++++|..|.+.+.
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 146 EFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987643
No 109
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.7e-20 Score=183.56 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=108.9
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------- 80 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEF-NMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITS-------- 80 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCC-CC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCG--------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHH--------
Confidence 3457999999999999999999997653 2333344555544444544 44 4889999999987655432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
.+++.+|++|+|+|++++.+.++. .|+..+... ++|++||+||+|+...+.... + ... .+....
T Consensus 81 ------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-~----~~~-~~~~~~ 148 (223)
T 3cpj_B 81 ------AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT-E----ESK-TFAQEN 148 (223)
T ss_dssp ------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH-H----HHH-HHHHHT
T ss_pred ------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH-H----HHH-HHHHHc
Confidence 267899999999999987665553 355666554 789999999999965433221 1 111 122223
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++++||++|.||+++|+.|.+.+..
T Consensus 149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 149 QLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp TCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999877644
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=2.8e-20 Score=177.55 Aligned_cols=161 Identities=27% Similarity=0.323 Sum_probs=119.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|.+|||||||+|+|++.....+.+.+++|++.....+.+++..+.+|||||+..... . .+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~-~~---------- 70 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD---E-VE---------- 70 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS---H-HH----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh---H-HH----------
Confidence 479999999999999999999987666788899999998888889998999999999964211 0 00
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhh-cCCCcEEEEeccCCCCccchhh
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN-YMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
......+...+..+|++++|+|+..+.+..+..++..+... ..+.|+++|+||+|+.......
T Consensus 71 ----------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~ 134 (172)
T 2gj8_A 71 ----------------RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 134 (172)
T ss_dssp ----------------HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE
T ss_pred ----------------HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh
Confidence 00012234567899999999999887665555565555543 2368999999999985422110
Q ss_pred HHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 323 ~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
....+.+++++||++|.|+++|++.|.+.+..
T Consensus 135 ---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 ---SEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---EEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ---hhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 00124478999999999999999999887753
No 111
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.2e-19 Score=171.16 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=106.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
.++|+++|.+|||||||+|+|++... .....++++.+.....+... ....+.+|||||+.++..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------------- 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL------------- 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh-------------
Confidence 36899999999999999999997652 22333433444333334331 2337999999998664322
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcc-hhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKN-QQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~-~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|++++.+.++.. |+..+... +.|+++|+||+|+..... ......... .+....++
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~~~~~ 143 (170)
T 1ek0_A 69 -APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE----KLAEEKGL 143 (170)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH----HHHHHHTC
T ss_pred -hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH----HHHHHcCC
Confidence 334789999999999999875554443 55555543 789999999999965411 111111111 22222357
Q ss_pred CEEEEeCccCCCHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+++++||++|.|++++|+.|.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998743
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=175.60 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=111.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.. ++. .+.||||||+.++..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------------ 77 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAA------------ 77 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHH------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhHH------------
Confidence 35799999999999999999999765 2345555665555555554 443 789999999866432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+++.+|++++|+|+++..+.... .|+..+... ++|+++|+||+|+........ ++ +.+.... .
T Consensus 78 --~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~----~~~~~~~-~ 149 (206)
T 2bov_A 78 --IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV-EE----AKNRAEQ-W 149 (206)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCH-HH----HHHHHHH-H
T ss_pred --HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccH-HH----HHHHHHH-h
Confidence 233477899999999999886544443 355555543 789999999999975433221 11 1112221 2
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++++||++|.|++++|..|.+...
T Consensus 150 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 150 NVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 113
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=177.73 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=107.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...+||+++|.+|||||||+|+|++.. + ...+.+|+.+.....+.. ++ ..+.||||||+.++..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~---------- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR-F-ISEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC---------- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS-C-CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT----------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH----------
Confidence 345799999999999999999999765 2 344445555544444443 33 47889999998765321
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH------hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~------~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
..+++.+|++++|+|+++..+.++.. |+..+.. .++|+++|+||+|+...+.... ++ ...+.+.
T Consensus 86 -----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~-~~~~~~~-- 156 (187)
T 3c5c_A 86 -----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK-AE-GVALAGR-- 156 (187)
T ss_dssp -----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH-HH-HHHHHHH--
T ss_pred -----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH-HH-HHHHHHH--
Confidence 13778999999999999865555443 5565554 3799999999999965333221 11 1112222
Q ss_pred cCCCCCEEEEeC-ccCCCHHHHHHHHHHHH
Q 005979 520 ALDWAPIVYSTA-IAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 520 ~~~~~~ii~vSA-k~g~gv~~L~~~i~~~~ 548 (666)
.+++++++|| ++|.||+++|+.|.+.+
T Consensus 157 --~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 --FGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp --HTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred --cCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 2468999999 89999999999998654
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=4.8e-20 Score=176.74 Aligned_cols=159 Identities=18% Similarity=0.104 Sum_probs=107.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.......+..|.+. ..+.. ++..+.+|||||+.++....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~~~------------ 79 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSY-KNLKLNVWDLGGQTSIRPYW------------ 79 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEE-TTEEEEEEEEC----CCTTG------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEE-CCEEEEEEECCCCHhHHHHH------------
Confidence 35799999999999999999999765444444444332 23333 56899999999997754432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+...... +++.+.+........+.
T Consensus 80 --~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 154 (183)
T 1moz_A 80 --RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSW 154 (183)
T ss_dssp --GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCE
T ss_pred --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCce
Confidence 12578999999999999876655433 4444443 47899999999999654221 11211111111112345
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++||++|.|+++++++|.+...+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 155 SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 79999999999999999999876643
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=8.2e-20 Score=177.48 Aligned_cols=157 Identities=15% Similarity=0.049 Sum_probs=105.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|.+|||||||+|+|++.... ...| |.......+.. ++..+.+|||||+.++..+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~------------- 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEY-KNICFTVWDVGGQDKIRPL------------- 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE--EEEE--ETTEEEEEEEE-TTEEEEEEECC-----CTT-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc--ccCC--cCceeEEEEEE-CCEEEEEEECCCCHhHHHH-------------
Confidence 3579999999999999999999876533 2222 33333334443 6779999999998765332
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+..... .+++.+.+........+.
T Consensus 90 -~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~ 165 (192)
T 2b6h_A 90 -WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQHLRSRTW 165 (192)
T ss_dssp -HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCSSCCE
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccccCCce
Confidence 23467899999999999987655543 34444443 2799999999999965422 122222222222223456
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+++++||++|.|++++|+.|.+..
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHH
Confidence 799999999999999999997654
No 116
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=3.5e-20 Score=177.40 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=102.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. + ...+.+|+.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------- 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT-F-PTDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDYNRLR---------- 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC-C-C----------CBCCCC--------CEEECCCC-CTTTTTG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCeeeeeEEEEEEE-CCEEEEEEEEECCCChhhhhhH----------
Confidence 35799999999999999999999764 2 334444554444333332 33 356799999998765432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH--HHHHHHHh--CCcEEEEEecccCCCCcchhhH----H-HHHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQE--GKGCLIVVNKWDTIPNKNQQTA----T-YYEQDVREKL 518 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~--i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~----~-~~~~~l~~~l 518 (666)
..+++.+|++++|+|++++.+.++.. |+..+... ++|+++|+||+|+.+....... . ...++..+..
T Consensus 74 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 74 ----PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp ----GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred ----HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 12678999999999999876665553 66666664 7999999999999654321000 0 0011111122
Q ss_pred hcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 519 ~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
...+..+++++||++|.|++++|+.|.+..
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 222334899999999999999999997653
No 117
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=7.8e-20 Score=180.96 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=111.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+||+++|.+|||||||+|+|++... ...+..|+.+.....+...+ ...+.||||||+.++..+..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP---------- 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH----------
Confidence 457999999999999999999997652 23333344443444444322 24789999999987654432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHH--HHHHHHHHHh--CCcEEEEEecccCCCC------------cchhhHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQD--CRIAERIEQE--GKGCLIVVNKWDTIPN------------KNQQTATYYEQ 512 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d--~~i~~~i~~~--~~pvIlv~NK~Dl~~~------------~~~~~~~~~~~ 512 (666)
.+++.+|++|+|+|+++..+..+ ..|+..+... +.|+++|+||+|+... +.... +
T Consensus 94 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-----~ 164 (214)
T 3q3j_B 94 ----LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISY-----E 164 (214)
T ss_dssp ----GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-----H
T ss_pred ----HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCH-----H
Confidence 26789999999999998766665 3466777765 7899999999999642 11111 1
Q ss_pred HHHHHHhcCCCC-CEEEEeCccCCC-HHHHHHHHHHHHHh
Q 005979 513 DVREKLRALDWA-PIVYSTAIAGQS-VDKIIVAAEMVDKE 550 (666)
Q Consensus 513 ~l~~~l~~~~~~-~ii~vSAk~g~g-v~~L~~~i~~~~~~ 550 (666)
...+..... ++ ++++|||++|.| |+++|+.|.+.+..
T Consensus 165 ~~~~~~~~~-~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 165 QGCAIAKQL-GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHH-TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc-CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 111222222 45 899999999998 99999999876544
No 118
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=6.4e-20 Score=177.38 Aligned_cols=157 Identities=12% Similarity=0.067 Sum_probs=107.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.+|||||||+|+|++.... ....+++..+. ..+. .++..+.||||||+.++..+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~-~~~~~~~l~Dt~G~~~~~~~-------------- 83 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFNM--RKIT-KGNVTIKLWDIGGQPRFRSM-------------- 83 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEE--EEEE-ETTEEEEEEEECCSHHHHTT--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCceeE--EEEE-eCCEEEEEEECCCCHhHHHH--------------
Confidence 579999999999999999999976532 22223222222 2333 36779999999998654321
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
...+++.+|++|+|+|+++..+.+.. .++..+.. .++|+++|+||+|+...... +++.+.+........+.+
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREIC 160 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEE
T ss_pred HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCee
Confidence 23467999999999999887555443 34444443 47999999999999754221 122222222222234568
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 119
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=179.62 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=101.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++... ...+.+++.+.....+.. ++. .+.||||||+.++..+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~---------- 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYDRLR---------- 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEE-CCEEEEEEEEECCCchhhhHHH----------
Confidence 357999999999999999999997642 233334444444444443 343 78999999987653322
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDV 514 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~l 514 (666)
..+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+...... .+.+ .++.
T Consensus 100 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 100 ----PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL--VNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH--HHHHHHTTCCCCCHHHH
T ss_pred ----HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh--hhhhcccccCcccHHHH
Confidence 2367899999999999987665554 366666654 7899999999999764211 0000 0112
Q ss_pred HHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 515 REKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 515 ~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
.+.....+..+++++||++|.|++++|+.|.+.+.+.
T Consensus 174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 2222233334899999999999999999998776543
No 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=1.3e-19 Score=177.25 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=109.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++... .....++++.+.. ..+.. ++ ..+.+|||||+.++..+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~---------- 91 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYDRLRP---------- 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGTTTGG----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHHHHHH----------
Confidence 47999999999999999999997653 2233344443332 23333 34 3789999999877644321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDVR 515 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~l~ 515 (666)
.+++.+|++|+|+|+++..+.++. .|+..+... ++|+++|+||+|+...... .+.+ .+...
T Consensus 92 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 92 ----LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHT--RRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp ----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHH--HHHHHTTTCCCCCHHHHH
T ss_pred ----HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccc--hhhhcccccCcCCHHHHH
Confidence 267899999999999886555554 466667665 8999999999999764211 0000 11122
Q ss_pred HHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 516 EKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 516 ~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
+.....+..+++++||++|.|++++|+.|.+..
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222333444899999999999999999998654
No 121
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=3.1e-19 Score=176.02 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC--CceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+++|++.. ....+++++.+... +...+ +..+.+|||||+.++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~------------ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRF------------ 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHH------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHH------------
Confidence 45799999999999999999999765 23444555555443 33322 56899999999854321
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCC--HHHHHHH-HHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACIT--EQDCRIA-ERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t--~~d~~i~-~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~ 519 (666)
.....+++.+|++|+|+|+++... .....++ ..+.. .++|+++|+||+|+...... +...+.+.+.+.
T Consensus 70 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~ 145 (214)
T 2fh5_B 70 -QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELN 145 (214)
T ss_dssp -HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHH
T ss_pred -HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHH
Confidence 123346899999999999986211 1122222 22222 26899999999999765332 222333333332
Q ss_pred ---------------------cCC-------------CCCEEEEeCccC------CCHHHHHHHHHHH
Q 005979 520 ---------------------ALD-------------WAPIVYSTAIAG------QSVDKIIVAAEMV 547 (666)
Q Consensus 520 ---------------------~~~-------------~~~ii~vSAk~g------~gv~~L~~~i~~~ 547 (666)
... .+++++|||++| .||+++|++|.+.
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 567999999999 9999999998753
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=5.6e-20 Score=178.15 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=111.0
Q ss_pred hcCCceEEEecCCCCChhHHHHHHhccCcc-cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 368 ~~~~~kI~vvG~~nvGKSSLin~ll~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
.+..+||+++|.+|||||||+|+|++.... ...+..|++.......+. ..+..+.||||||+.++.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~------------ 86 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQERYR------------ 86 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHHHCH------------
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChHHHH------------
Confidence 345689999999999999999999976421 122233444444333332 245589999999975432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
.....+++.+|++|+|+|++++.+.+.. .|+..+.. .++|+++|+||+|+...+.....+ ...+ ....
T Consensus 87 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~~----~~~~ 158 (191)
T 3dz8_A 87 --TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEK--GQLL----AEQL 158 (191)
T ss_dssp --HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH--HHHH----HHHH
T ss_pred --HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHH--HHHH----HHHc
Confidence 2234578999999999999876544433 35566655 478999999999996543322111 1112 2222
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999876543
No 123
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=1.2e-19 Score=200.12 Aligned_cols=159 Identities=31% Similarity=0.474 Sum_probs=126.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcc-cccCCchhhhhhhhhhhccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~-~~~~~~~~~~~~~~~~~~~~ 242 (666)
++|+|+|+||||||||+|+|++...+++.+++++|++.....+.+++..+.+|||||+. .....-+. +
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~----~------- 312 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER----L------- 312 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC----C-------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHH----H-------
Confidence 68999999999999999999998778899999999999999999999999999999997 43211110 0
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc-chh
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GIM 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~-~~~ 321 (666)
| .+.+..++..+|++|+|+|++.+.+..+.++++.+ .++|+++|+||+|+... ...
T Consensus 313 --g-----------------i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~ 369 (482)
T 1xzp_A 313 --G-----------------IERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEE 369 (482)
T ss_dssp --C-----------------HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHH
T ss_pred --H-----------------HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHH
Confidence 0 13455778999999999999988888777776655 37899999999999653 111
Q ss_pred hHHHHHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 322 ~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
....+...+.+++++||++|.|+++|++.|.+.+.
T Consensus 370 ~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 370 EIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 22223333457899999999999999999987654
No 124
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.7e-19 Score=174.63 Aligned_cols=159 Identities=17% Similarity=0.066 Sum_probs=108.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++... .....+.++.+.....+... .+..+.||||||+.++..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL------------ 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh------------
Confidence 347999999999999999999997652 22333333333333333332 2357999999998765432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++|+|+|++++.+..+. .|+..+.. .++|+++|+||+|+... .... +. ..+ +....+
T Consensus 81 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~-~~----~~~-~~~~~~ 151 (195)
T 1x3s_A 81 --TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVDR-NE----GLK-FARKHS 151 (195)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSCH-HH----HHH-HHHHTT
T ss_pred --hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc-ccCH-HH----HHH-HHHHcC
Confidence 23478999999999999886554443 34555554 36899999999999542 2211 11 111 222235
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|++++|+.|.+.+.+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999877654
No 125
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=5.6e-20 Score=182.56 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=114.2
Q ss_pred CCceEEEecCCCCChhHHHHHHh-ccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALV-GEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll-~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+||+++|.+|||||||+|+|+ +.......+..|++.......+.. .+..+.+|||||+.++..+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~----------- 81 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLR----------- 81 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHH-----------
Confidence 45799999999999999999965 433445677788888877655532 45589999999987765432
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ 525 (666)
..+++.+|++|+|+|++++.+.++.. |+..+... ++|+++|+||+|+.+......... + ....+++
T Consensus 82 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~----~----~~~~~~~ 150 (221)
T 3gj0_A 82 ---DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV----F----HRKKNLQ 150 (221)
T ss_dssp ---HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCC----H----HHHHTCE
T ss_pred ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHH----H----HHHcCCE
Confidence 23678999999999999876555543 55555553 789999999999975432211111 1 1112578
Q ss_pred EEEEeCccCCCHHHHHHHHHHHH
Q 005979 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 526 ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++||++|.|++++|..|.+.+
T Consensus 151 ~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 151 YYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EEECBGGGTBTTTHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997654
No 126
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=1.8e-19 Score=174.16 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=107.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.. ++ ..+.||||||+.++..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------------ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRK------------ 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHT------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhh------------
Confidence 457999999999999999999997643 2333444444444444443 33 4899999999755320
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
.....+++.+|++|+|+|+++..+.+.. .|+..+.+ .++|+++|+||+|+...+.... + . .+.+....
T Consensus 85 -~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~----~-~~~~~~~~ 157 (189)
T 1z06_A 85 -SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT-D----L-AQKFADTH 157 (189)
T ss_dssp -TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH-H----H-HHHHHHHT
T ss_pred -hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH-H----H-HHHHHHHc
Confidence 1234478899999999999886554443 35555554 3689999999999965433221 1 1 12222333
Q ss_pred CCCEEEEeCccC---CCHHHHHHHHHHHH
Q 005979 523 WAPIVYSTAIAG---QSVDKIIVAAEMVD 548 (666)
Q Consensus 523 ~~~ii~vSAk~g---~gv~~L~~~i~~~~ 548 (666)
+++++++||++| .|++++|..|.+.+
T Consensus 158 ~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 SMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp TCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 578999999999 99999999987544
No 127
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=7.5e-19 Score=170.31 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=110.8
Q ss_pred CCCCCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 160 EHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 160 ~~~~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
....++|+++|.+|||||||+|+|++.. ...+.+.+++|.+...... +.++.+|||||+........ ..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~-~~------ 89 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKS-ER------ 89 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHH-HH------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHH-HH------
Confidence 3456899999999999999999999886 4556778888887765433 44799999999865322111 00
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHh---ccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCC
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEE---SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~---ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~ 315 (666)
..+.......+.. +|++++|+|+..+.+..+..+.+++.. .+.|+++|+||+|+
T Consensus 90 ---------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 90 ---------------------EAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADK 146 (195)
T ss_dssp ---------------------HHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred ---------------------HHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 0111222333444 499999999999999888888888876 58899999999999
Q ss_pred Cccchhh-----HHHHHh--cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 316 PRKGIMQ-----VSEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 316 ~~~~~~~-----~~~~~~--~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
....... ....+. .+.+++++||++|.|+++|++.|.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 147 IPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 7643221 111122 2347899999999999999999987764
No 128
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=2.5e-19 Score=182.67 Aligned_cols=175 Identities=14% Similarity=0.064 Sum_probs=123.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCc-ceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-tT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++...+..+..++ +|++.....+.. ++..+.||||||+.++.... ........
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~---~~~~~~i~ 96 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHC---EALYKEVQ 96 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCC---HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCH---HHHHHHHH
Confidence 45799999999999999999999887666666665 788877666664 78899999999998753211 01111123
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-----CCcEEEEEe-cccCCCCcchhh-HH----HHHHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVVN-KWDTIPNKNQQT-AT----YYEQDVREK 517 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-----~~pvIlv~N-K~Dl~~~~~~~~-~~----~~~~~l~~~ 517 (666)
..+..+++.+|++|+|+|++. ++.++..+++++.+. ++|+|+|+| |+|+... .... .. .....+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 344557789999999999986 788888888888775 678888887 9999743 1111 00 001112222
Q ss_pred HhcCC--CCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 518 LRALD--WAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 518 l~~~~--~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+.... +.+ +++||++|.|++++|..|.+.....
T Consensus 175 ~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhC
Confidence 22211 223 8899999999999999998876653
No 129
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=3.7e-19 Score=166.79 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=107.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
++|+++|.+|||||||+|+|++... .....+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~------------- 67 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------- 67 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCHH-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhhHH-------------
Confidence 6899999999999999999997642 233444554544444443 33 36889999998664321
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHHh----CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~~----~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++++|+|+++..+.++. .|+..+... ++|+++|+||+|+.+.. .. .+. ...+.+. .++
T Consensus 68 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~-~~~-~~~~~~~----~~~ 139 (166)
T 2ce2_X 68 -RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VE-SRQ-AQDLARS----YGI 139 (166)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SC-HHH-HHHHHHH----HTC
T ss_pred -HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cC-HHH-HHHHHHH----cCC
Confidence 23467899999999999876544443 355555543 79999999999997632 11 111 1222222 246
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|+++++..|.+...
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 130
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=1e-20 Score=208.46 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=135.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcc------------------------------cccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
.++|+++|++|+|||||+|+|++.... ......|+|++.....+.. ++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCc
Confidence 479999999999999999999864100 0111357888877777764 677
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCH-------HHHHHHHHHHHhCCc-EEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE-------QDCRIAERIEQEGKG-CLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~-------~d~~i~~~i~~~~~p-vIlv 492 (666)
.+.||||||+.++. ..+..+++.+|++|+|+|++++..+ +..+.+..+...++| +|+|
T Consensus 86 ~~~iiDtPGh~~f~--------------~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivv 151 (458)
T 1f60_A 86 QVTVIDAPGHRDFI--------------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151 (458)
T ss_dssp EEEEEECCCCTTHH--------------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCcHHHH--------------HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEE
Confidence 99999999986542 3355678899999999999987544 677777777777886 9999
Q ss_pred EecccCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhH-HHHHHHH
Q 005979 493 VNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATI-NQVVQEA 567 (666)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~l-n~~l~~~ 567 (666)
+||+|+... .....+...+++.+.+...+ .++++++||++|.|+.++...+ .++..|..+++|+.+ +..|.++
T Consensus 152 iNK~Dl~~~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~-~~~~~~~~~~~tg~~~~~~Ll~~ 229 (458)
T 1f60_A 152 VNKMDSVKW-DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNA-PWYKGWEKETKAGVVKGKTLLEA 229 (458)
T ss_dssp EECGGGGTT-CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSC-TTCCCEEEECSSSEEEESSHHHH
T ss_pred EEccccccC-CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccC-chhhcccccccccccchHHHHHH
Confidence 999999742 12233344555555555444 3789999999999998765331 234445556666544 3445555
Q ss_pred HHccCCCCCCCCcceeE
Q 005979 568 VAFKSPPRTRGGRRGRV 584 (666)
Q Consensus 568 ~~~~~~p~~~~~k~~ki 584 (666)
+...+||.....+++++
T Consensus 230 l~~~~~p~~~~~~p~r~ 246 (458)
T 1f60_A 230 IDAIEQPSRPTDKPLRL 246 (458)
T ss_dssp HHTSCCCCCCTTSCCEE
T ss_pred hhccCCCcccCCCCcEE
Confidence 66666664333444443
No 131
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=2.1e-19 Score=171.27 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=120.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
...++|+++|.+|||||||+|+|++.. ......+++|.+.....+.+++..+.+|||||+........
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA----------- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-----------
Confidence 346789999999999999999999876 34456677888877777788899999999999875433221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
..+..+|++++|+|+..+......+.+..+.. .+.|+++|+||+|+.....
T Consensus 74 ---------------------------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 74 ---------------------------RGAQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp ---------------------------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH
T ss_pred ---------------------------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH
Confidence 23467999999999988887877777776655 4789999999999976432
Q ss_pred hhHHHHH-hc-------C--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 MQVSEFW-SL-------G--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 ~~~~~~~-~~-------~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
....... .. + .+++++||++|.|+++|++.|.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 2222211 11 1 3678999999999999999998877643
No 132
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=3e-19 Score=186.78 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=120.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.+||+++|.+|||||||+|+|++.....+.+.+++|++.....+...++..+.+|||||+.++. +.+....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM---------ENYFTKQ 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH---------HHHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh---------hhhhhhH
Confidence 4699999999999999999999876566777888999888777765456799999999986541 1111223
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh-----CCcEEEEEecccCCCCcchh-hHHHHHHHHHHHHhcCC-
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQ-TATYYEQDVREKLRALD- 522 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~-----~~pvIlv~NK~Dl~~~~~~~-~~~~~~~~l~~~l~~~~- 522 (666)
...+++.+|++|+|+|+++..+.++.. |..++.+. ++|+++|+||+|+....... ........+.+.....+
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 455789999999999999987777764 33444332 79999999999997522111 11112233444444444
Q ss_pred -CCCEEEEeCccCCCHHHHHHHHHH
Q 005979 523 -WAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 523 -~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.++++++||++ .|+.++|..+..
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHH
Confidence 38999999999 788888888764
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.3e-19 Score=202.37 Aligned_cols=168 Identities=17% Similarity=0.061 Sum_probs=114.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++.... ...+ |++.....+.. ++..+.||||||+.++..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~------------ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLW------------ 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEES-SSCEEEEEEECCCGGGSGGG------------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEe-CCEEEEEEECCCcHHHHHHH------------
Confidence 3579999999999999999999987633 3333 44444445554 67899999999987765432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++|+|||++++.+.++.. ++..+.+ .++|+|||+||+|+...... +++...+........+.
T Consensus 384 --~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 384 --RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRDRNW 458 (497)
T ss_dssp --GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH---HHHHHHTTCTTCCSSCE
T ss_pred --HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH---HHHHHHhchhhhhcCCe
Confidence 23689999999999999876665543 4444433 37999999999999654221 22222222222223456
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchh
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTAT 559 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ 559 (666)
++++|||++|.||+++|++|.+.++.+..+++|..
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC----------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 79999999999999999999988877777776654
No 134
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=7.3e-19 Score=169.78 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=105.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++... .....+++.+.....+.. ++ ..+.||||||+.++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------------ 85 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------ 85 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEE-CCEEEEEEEEECCChHHHHHH------------
Confidence 47999999999999999999997642 334455555555555543 44 35899999998654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
...+++.+|++++|+|+++..+.++.. |+..+.. .++|+++|+||+|+... ... .+.. ..+.+. .+
T Consensus 86 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~-~~~~-~~~~~~----~~ 156 (190)
T 3con_A 86 --RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVD-TKQA-HELAKS----YG 156 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSC-HHHH-HHHHHH----HT
T ss_pred --HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCC-HHHH-HHHHHH----cC
Confidence 234678999999999998865544443 4455544 27899999999999752 211 1111 122222 24
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
++++++||++|.|+++++..|.+.+.+
T Consensus 157 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 157 IPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999877654
No 135
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=1.8e-19 Score=178.11 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-----------CceEEEEEcCCCccccccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-----------GQKFRLIDTAGIRKRAAIA 437 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-----------~~~~~liDTpG~~~~~~~~ 437 (666)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.+.+ ...+.||||||+.++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--- 98 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR--- 98 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH---
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH---
Confidence 3457999999999999999999997642 233334444444433343322 3579999999974431
Q ss_pred cCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 438 ~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
.....+++.+|++|+|+|++++.+.++.. |+..+.. .++|+++|+||+|+...+.... +
T Consensus 99 -----------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~-~---- 162 (217)
T 2f7s_A 99 -----------SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE-R---- 162 (217)
T ss_dssp -----------HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH-H----
T ss_pred -----------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH-H----
Confidence 23455789999999999998865544433 3333332 4689999999999965333221 1
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
.. +.+....+++++++||++|.|++++|+.|.+.+.
T Consensus 163 ~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 QA-RELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HH-HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HH-HHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11 1222223578999999999999999999986543
No 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.80 E-value=5e-19 Score=170.54 Aligned_cols=165 Identities=24% Similarity=0.300 Sum_probs=106.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
++|+++|.+|||||||+|+|++.. +.....+|+|++.....+ + .+.+|||||+.....+.. ...+.+ ....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~--~~~~~~-~~~~ 72 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW---K--NHKIIDMPGFGFMMGLPK--EVQERI-KDEI 72 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE---T--TEEEEECCCBSCCTTSCH--HHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec---C--CEEEEECCCccccccCCH--HHHHHH-HHHH
Confidence 589999999999999999999775 667778888887655433 2 689999999754322110 001111 1222
Q ss_pred HHHHh----hCCeEEEEeecccc-----------CCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHH
Q 005979 452 FRAIR----RSDVVALVIEAMAC-----------ITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (666)
Q Consensus 452 ~~~i~----~advvllViDa~~~-----------~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~ 516 (666)
..+++ .++++++|+|.... ...++..++..+...++|+++|+||+|+.... . ...+.+.+
T Consensus 73 ~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~----~~~~~~~~ 147 (190)
T 2cxx_A 73 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-Q----EVINFLAE 147 (190)
T ss_dssp HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-H----HHHHHHHH
T ss_pred HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-H----HHHHHHHH
Confidence 33444 45566666665431 11122334455556789999999999997643 1 11223333
Q ss_pred HHhcCC---CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 517 KLRALD---WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 517 ~l~~~~---~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
.+.... ..+++++||++|.|++++|+.|.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 332100 1358999999999999999999877654
No 137
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.80 E-value=5.2e-20 Score=180.19 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=79.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcce-eeeEeEEEecCC---CceEEEEEcCCCccccccccCCchhhH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGPE---GQKFRLIDTAGIRKRAAIASSGSTTEA 445 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT-~d~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~e~ 445 (666)
..++|+++|.+|||||||+|+|++........+.+|+ .+.....+...+ ...+.||||||+.++..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKE---------- 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHH----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHH----------
Confidence 3479999999999999999999977333334444444 355555665533 34799999999855422
Q ss_pred HHHHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH------hCCcEEEEEecccCCC-CcchhhHHHHHHHHHHH
Q 005979 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIP-NKNQQTATYYEQDVREK 517 (666)
Q Consensus 446 ~~~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~------~~~pvIlv~NK~Dl~~-~~~~~~~~~~~~~l~~~ 517 (666)
....+++.+|++|+|+|++++.+.+.. .|+..+.. .++|+++|+||+|+.. .+.... + .+.+.
T Consensus 89 ----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~-~----~~~~~ 159 (208)
T 2yc2_C 89 ----QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL-D----MAQDW 159 (208)
T ss_dssp ----HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCH-H----HHHHH
T ss_pred ----HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCH-H----HHHHH
Confidence 233467899999999999987654443 36666665 4789999999999976 333221 1 11222
Q ss_pred HhcCCCCCEEEEeCcc-CCCHHHHHHHHHHHHH
Q 005979 518 LRALDWAPIVYSTAIA-GQSVDKIIVAAEMVDK 549 (666)
Q Consensus 518 l~~~~~~~ii~vSAk~-g~gv~~L~~~i~~~~~ 549 (666)
... .+++++++||++ |.|++++|+.|.+.+.
T Consensus 160 ~~~-~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 160 ATT-NTLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHH-TTCEEEECCC-------CHHHHHHHHHHH
T ss_pred HHH-cCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 222 247899999999 9999999999987654
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=4.4e-19 Score=189.27 Aligned_cols=191 Identities=22% Similarity=0.237 Sum_probs=116.4
Q ss_pred cchhhhhhhhhhhcccccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEE
Q 005979 137 ETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLV 216 (666)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~li 216 (666)
+..++.++....+.+...+..+.....++|+|+|++|||||||+|+|++.. ..+.+.+++|++...+.+.+++..+.++
T Consensus 153 i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~ 231 (364)
T 2qtf_A 153 INKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLV 231 (364)
T ss_dssp HHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEE
Confidence 333444444443333333444444556789999999999999999999987 5778889999999999999999999999
Q ss_pred ecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC--CHHH-HHH
Q 005979 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAAD-EEI 293 (666)
Q Consensus 217 DTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~--~~~d-~~i 293 (666)
||||+.. ..+..+.+. + +.+...+..+|++++|+|++++. .... ..+
T Consensus 232 DT~G~i~--~lp~~lve~---------------------------f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~ 281 (364)
T 2qtf_A 232 DTVGFIR--GIPPQIVDA---------------------------F-FVTLSEAKYSDALILVIDSTFSENLLIETLQSS 281 (364)
T ss_dssp ECCCBCS--SCCGGGHHH---------------------------H-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHH
T ss_pred eCCCchh--cCCHHHHHH---------------------------H-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHH
Confidence 9999864 222222211 1 33445678999999999998754 1111 123
Q ss_pred HHHHHhh-cCCCcEEEEeccCCCCccchhhHHH----H-Hhc---CCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 294 ADWLRKN-YMDKFIILAVNKCESPRKGIMQVSE----F-WSL---GFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 294 ~~~l~~~-~~~~p~ilv~NK~D~~~~~~~~~~~----~-~~~---~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.+.+... ..++|+++|+||+|+.......... + ..+ +..++++||++|.|+++|++.|.+.+...
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3444432 2478999999999987643221111 1 122 22579999999999999999998877654
No 139
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.2e-19 Score=175.31 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=106.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+|+|++.... ..+.+++.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~---------- 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRP---------- 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTTTGG----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHHHHH----------
Confidence 469999999999999999999976532 22233333333333443 44 3789999999977644321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDVR 515 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~l~ 515 (666)
.+++.+|++|+|+|+++..+.+.. .|+..+... ++|+++|+||+|+...... .+.+ .....
T Consensus 92 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 92 ----LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHV--RTELARMKQEPVRTDDGR 165 (207)
T ss_dssp ----GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHH--HHHHHHTTCCCCCHHHHH
T ss_pred ----hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccc--hhhhhhcccCCCCHHHHH
Confidence 257899999999999886554444 466667665 8999999999999653211 0000 01111
Q ss_pred HHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 516 EKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 516 ~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
......+..+++++||++|.|++++|+.|.+...
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2222233348999999999999999999987643
No 140
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=2.1e-18 Score=166.69 Aligned_cols=169 Identities=27% Similarity=0.398 Sum_probs=121.8
Q ss_pred CCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 159 ~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
+....++|+++|.+|||||||+|+|++.......+.+++|.+..... .+.++.+|||||+......... .
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~-~------ 88 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKE-R------ 88 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHH-H------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhh-H------
Confidence 34456899999999999999999999988677788888888766533 2557899999997542211110 0
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+ ..+...+.+....+|++++|+|+..+....+..+.+++.. .+.|+++|+||+|+...
T Consensus 89 -----------------~~~-~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 89 -----------------MLW-KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp -----------------HHH-HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCG
T ss_pred -----------------HHH-HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCCh
Confidence 001 1112223333455699999999998888888888888887 48999999999998754
Q ss_pred chhh-----HHHHHhc-C-CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GIMQ-----VSEFWSL-G-FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~~~-----~~~~~~~-~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... ...+... + ++++++||++|.|+++|++.|.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 149 SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3211 1222222 3 488999999999999999999887753
No 141
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=2.6e-19 Score=197.29 Aligned_cols=162 Identities=26% Similarity=0.333 Sum_probs=98.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|+||||||||+|+|++...+.+.+.+|+|++.....+.+++..+.+|||||+..+....+ .
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve----~--------- 300 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE----H--------- 300 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH----H---------
Confidence 469999999999999999999987788999999999999999999999999999999975322111 0
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchhh
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~ 322 (666)
...+.+..++..+|++|+|+|++.+.+.... ....++... .++|+++|+||+|+.......
T Consensus 301 -----------------~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~ 362 (476)
T 3gee_A 301 -----------------EGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADAL 362 (476)
T ss_dssp ------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHH
T ss_pred -----------------HHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchh
Confidence 0112344567889999999999988776221 222333332 378999999999997654332
Q ss_pred HHHHHhc-CCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 323 VSEFWSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 323 ~~~~~~~-~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
...+... ..+++++||++|.|+++|++.|.+.+.
T Consensus 363 ~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 363 IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 2223332 247899999999999999999988776
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=2.2e-19 Score=172.91 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=108.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++... . ..+..|+.+.....+...+ ...+.+|||||+.++..+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP---------- 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG----------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH----------
Confidence 457999999999999999999997642 2 2222233333333444322 34789999999877644321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCc------------chhhHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNK------------NQQTATYYEQ 512 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~------------~~~~~~~~~~ 512 (666)
.+++.+|++|+|+|++++.+.++. .|+..+.+. ++|+++|+||+|+.... ... . +
T Consensus 74 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-~----~ 144 (184)
T 1m7b_A 74 ----LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS-Y----D 144 (184)
T ss_dssp ----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC-H----H
T ss_pred ----hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCC-H----H
Confidence 257899999999999987666654 366666653 78999999999996421 111 1 1
Q ss_pred HHHHHHhcCCCCCEEEEeCc-cCCCHHHHHHHHHHHH
Q 005979 513 DVREKLRALDWAPIVYSTAI-AGQSVDKIIVAAEMVD 548 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk-~g~gv~~L~~~i~~~~ 548 (666)
+..+.....+..+++++||+ +|.|++++|..|.+..
T Consensus 145 ~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 145 QGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 12222222334689999999 6899999999998654
No 143
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=1.6e-19 Score=188.21 Aligned_cols=161 Identities=32% Similarity=0.489 Sum_probs=126.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcc-cccCCchhhhhhhhhhhccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~-~~~~~~~~~~~~~~~~~~~~ 242 (666)
..|+|+|++|||||||+|+|+|...+++++.+++|++...+.+.+++.++.++||||+. ... ..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~------------ 73 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RA------------ 73 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HH------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hh------------
Confidence 47999999999999999999999877788889999988888888888999999999986 210 00
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCc-cc-h
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-KG-I 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~-~~-~ 320 (666)
+...+...+..++..+|++++|+|+.. ++..+..+++.+.. .+.|+++|+||+|+.. .. .
T Consensus 74 ---------------l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~ 135 (301)
T 1ega_A 74 ---------------INRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADL 135 (301)
T ss_dssp ---------------HHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHH
Confidence 011122233456788999999999987 89888888888875 5799999999999976 22 1
Q ss_pred hhH-HHHHh-cCC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 321 MQV-SEFWS-LGF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 321 ~~~-~~~~~-~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... ..+.. +++ .++++||++|.|+.+|++.|...+++
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 122 22322 465 58999999999999999999988764
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=1.8e-19 Score=201.06 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=94.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc---------------------ccCCCcceeeeEeEEEecCCCceEEEEEcC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI---------------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~---------------------~~~~~gtT~d~~~~~~~~~~~~~~~liDTp 428 (666)
+.++|+++|++|+|||||+|+|++....+ ....+|+|.......+.+ ++..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 35799999999999999999997322111 111246777766666764 78899999999
Q ss_pred CCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
|+.++.. .+.++++.+|++|+|+|++++.+.++..++..+...++|+|+|+||+|+...
T Consensus 91 G~~df~~--------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTE--------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCH--------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CchhHHH--------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 9987632 3566889999999999999999999999999999999999999999999654
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.79 E-value=4.6e-19 Score=182.36 Aligned_cols=170 Identities=12% Similarity=0.145 Sum_probs=107.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccC-------CCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP-------ISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGS 441 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~-------~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~ 441 (666)
.++|+++|.+|+|||||+|+|++...+.... .++++.+.....+.. +|. .+.||||||+.+.........
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHH
Confidence 4799999999999999999999887665543 455666665555543 454 899999999976533222222
Q ss_pred hhhHHHHHHHHHHHhh-------------CCeEEEEeeccc-cCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhH
Q 005979 442 TTEALSVNRAFRAIRR-------------SDVVALVIEAMA-CITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA 507 (666)
Q Consensus 442 ~~e~~~~~~~~~~i~~-------------advvllViDa~~-~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~ 507 (666)
.+..+...+...+++. +|+++++++.+. ++...+..+++.+.. ++|+|+|+||+|+..... .
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e---~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE---C 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHH---H
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHH---H
Confidence 3333444455556655 789999996654 788999999998887 899999999999975322 2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 508 TYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 508 ~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
..+.+.+.+.+... +++++++||++|.|++++++.|.+
T Consensus 163 ~~~~~~i~~~l~~~-~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 163 QQFKKQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHHHHT-TCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHc-CCeEEcCCCCCChhHHHHHHHHhc
Confidence 33344455555443 577899999999999999888864
No 146
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.8e-19 Score=172.84 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=105.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC-CCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++... .....+.+. ......+... ....+.||||||+.++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPA------------- 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSCCCC-EEEEEEEEETTEEEEEEEEECCGGGSCHH-------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CCcccCccc-cceeEEEEECCEEEEEEEEeCCChHHhHH-------------
Confidence 457999999999999999999997542 222222222 2222222221 233789999999865422
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
....+++.+|++++|+|++++.+.+... ++..+.+ .++|+++|+||+|+... .... +. ...+... .
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~~~-~~-~~~~~~~----~ 143 (199)
T 2gf0_A 72 -MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDT-RE-AQAVAQE----W 143 (199)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-SSCH-HH-HHHHHHH----H
T ss_pred -HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc-ccCH-HH-HHHHHHH----h
Confidence 2234678999999999998764443332 4444444 26899999999999753 2211 11 1112221 2
Q ss_pred CCCEEEEeCccCCCHHHHHHHHHHHHHhcc
Q 005979 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKERS 552 (666)
Q Consensus 523 ~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~ 552 (666)
+++++++||++|.|++++|++|.+.+.++.
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 468999999999999999999987765543
No 147
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=8.1e-19 Score=165.98 Aligned_cols=156 Identities=29% Similarity=0.399 Sum_probs=108.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|++|||||||+|+|++.. ..++..+++|.+...+.+.+++..+.+|||||+..+..... .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~----------- 69 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--D----------- 69 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH--H-----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch--h-----------
Confidence 579999999999999999999876 45677888898888888888889999999999876432210 0
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
. .....++ ..+|++++|+|+... .....+...+.+ .+.|+++|+||+|+.....
T Consensus 70 ----------------~---~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 70 ----------------E---IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLME--MGANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp ----------------H---HHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHH--TTCCEEEEEECHHHHHHTTC
T ss_pred ----------------H---HHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHh--cCCCEEEEEEchHhccccCh
Confidence 0 1111222 479999999998752 122234444444 4799999999999754211
Q ss_pred -hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 -MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 -~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.....+ ..++.+++++||++|.|++++++.|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 127 EIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp CCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 111222 235678999999999999999999987653
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=5.4e-19 Score=179.00 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=118.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCC-cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~-gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++...+.....+ ++|+......+.. ++..+.||||||+.+..... +........
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~--~~~~~~~i~ 96 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSK--TDPGCEERG 96 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHH--HSTTSHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCc--HHHHHHHHH
Confidence 4579999999999999999999998766655444 5888877766664 78899999999986542210 000011111
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh------CCcEEEEEecccCCCCcchhhHHHH-HHHHHHHHhcC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE------GKGCLIVVNKWDTIPNKNQQTATYY-EQDVREKLRAL 521 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~------~~pvIlv~NK~Dl~~~~~~~~~~~~-~~~l~~~l~~~ 521 (666)
.....+.+.+|++|+|+|++. ++..+..+++++.+. +.|+|||+||+|+............ ...+...+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 112233499999999999985 888888888888774 7899999999999653211111000 02244444444
Q ss_pred CCCCEEEEeCcc-----CCCHHHHHHHHHHHHHhcccC
Q 005979 522 DWAPIVYSTAIA-----GQSVDKIIVAAEMVDKERSRR 554 (666)
Q Consensus 522 ~~~~ii~vSAk~-----g~gv~~L~~~i~~~~~~~~~~ 554 (666)
+ ..++.+++.. +.||.+|+..|.+...+....
T Consensus 176 g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~ 212 (247)
T 3lxw_A 176 G-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGA 212 (247)
T ss_dssp T-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred C-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCC
Confidence 4 3455565444 689999999999888764433
No 149
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=4.2e-19 Score=186.23 Aligned_cols=214 Identities=18% Similarity=0.293 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCc-----ccccCCC---cceeee-------
Q 005979 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR-----TIVSPIS---GTTRDA------- 409 (666)
Q Consensus 345 ~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~-----~~~~~~~---gtT~d~------- 409 (666)
-.++..+.+.+...... ....++|+|+|.+|+|||||+|+|+|... ..+...| .++++.
T Consensus 4 ~~~~~~l~~~~~~~~~~------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~ 77 (315)
T 1jwy_B 4 IPVINKLQDVFNTLGSD------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQ 77 (315)
T ss_dssp HHHHHHHHHHTTTSSSC------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCC
T ss_pred HHHHHHHHHHHHHcCCC------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccc
Confidence 34555555555433211 23468999999999999999999998875 2233344 233320
Q ss_pred -------------------------------------------EeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 410 -------------------------------------------IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 410 -------------------------------------------~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+...+..+++..+.||||||+.+..... ....+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~-~~~~~~~~ 156 (315)
T 1jwy_B 78 TQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGD-QPTDIEQQ 156 (315)
T ss_dssp CCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------CSHHH
T ss_pred hhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCC-CchhHHHH
Confidence 0111122345689999999996522100 00123455
Q ss_pred HHHHHHHHHhhCCeEEEEeec-cccCCHHH-HHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc--CC
Q 005979 447 SVNRAFRAIRRSDVVALVIEA-MACITEQD-CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa-~~~~t~~d-~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~--~~ 522 (666)
....+..+++.+|++++|+|+ +.+++..+ ..+++++...++|+++|+||+|+...... .. +.+...+.. ..
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~~----~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-AM----EVLTGRVIPLTLG 231 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-CH----HHHTTSSSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-HH----HHHhCCCccCCCC
Confidence 667788899999999999997 45555334 46778877789999999999999764331 11 112211112 23
Q ss_pred CCCEEEEeCcc---CCCHHHHHHHHHHHHHh------cccCCCchhHHHHHHHHHHc
Q 005979 523 WAPIVYSTAIA---GQSVDKIIVAAEMVDKE------RSRRLSTATINQVVQEAVAF 570 (666)
Q Consensus 523 ~~~ii~vSAk~---g~gv~~L~~~i~~~~~~------~~~~i~t~~ln~~l~~~~~~ 570 (666)
+.+++.+||++ +.|+.+++..+.+.+.. ...+.++..|+.++++.+..
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~ 288 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHH
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHH
Confidence 34455556666 89999999998877653 23455677788888777653
No 150
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.79 E-value=6.3e-21 Score=186.24 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=106.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++.. +.....++++.+.....+.. ++ ..+.||||||+.++..+..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------- 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITS--------- 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHH---------
Confidence 45899999999999999999999754 33444566666666556654 44 4799999999887755432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.+++.+|++|+|+|+++..+.+... |+..+... ++|+++|+||+|+...+.....+ .+.+....+
T Consensus 101 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~------~~~~~~~~~ 169 (199)
T 3l0i_B 101 -----SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTT------AKEFADSLG 169 (199)
T ss_dssp -----C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-------CHHHHTTT
T ss_pred -----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHH------HHHHHHHcC
Confidence 2678999999999999876554443 55555443 78999999999997543221100 112233345
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
++++++||++|.|++++|..|.+.+
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987543
No 151
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=1.8e-19 Score=185.38 Aligned_cols=163 Identities=22% Similarity=0.289 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|||||||+|+|+|.. ..+++.+|+|.+...+.+.+.+..+.+|||||+.........
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~------------ 69 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQ------------ 69 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccccccc------------
Confidence 3589999999999999999999987 688999999999999999998999999999999874421100
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~- 321 (666)
..+...+.+. ......+|++++|+|+.. ......+..++.. .+.|+++|+||+|+......
T Consensus 70 -------------~~~~e~i~~~-~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~ 131 (274)
T 3i8s_A 70 -------------TSLDEQIACH-YILSGDADLLINVVDASN--LERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIR 131 (274)
T ss_dssp -------------CCHHHHHHHH-HHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEE
T ss_pred -------------CCHHHHHHHH-HHhhcCCCEEEEEecCCC--hHHHHHHHHHHHh--cCCCEEEEEECccchhhhhHH
Confidence 0001111111 112368999999999975 2333455566665 38999999999997643211
Q ss_pred -hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 322 -QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 322 -~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.... ...+|++++++||++|.|+++|++.|.+.++
T Consensus 132 ~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 132 IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 1112 2346789999999999999999999987665
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=6.4e-19 Score=171.41 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..++|+++|.+|||||||+|+|++.... ..+.+++.+.....+...+ ...+.+|||||+.+ .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-------------- 89 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-------------- 89 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c--------------
Confidence 3579999999999999999999976532 2223333333333343312 34799999999864 1
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
.....+++.+|++++|+|+++..+..+.. |+..+.. .++|+++|+||+|+...+.... ++ ...+.+. .+
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~-~~-~~~~~~~----~~ 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST-EE-GEKLATE----LA 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCH-HH-HHHHHHH----HT
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCH-HH-HHHHHHH----hC
Confidence 12345788999999999998865444332 4555544 3789999999999965433221 11 1112222 25
Q ss_pred CCEEEEeCccCC-CHHHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQ-SVDKIIVAAEMVDK 549 (666)
Q Consensus 524 ~~ii~vSAk~g~-gv~~L~~~i~~~~~ 549 (666)
++++++||++|. |++++|+.|.+...
T Consensus 164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 164 CAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 789999999999 99999999987654
No 153
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=4.3e-19 Score=174.49 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=108.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC-CceEEEEEcCCCccccccccCCchhhHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
..+||+++|.+|||||||+|+|++... .....+ |+.......+...+ ...+.||||||+.++..+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP---------- 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG----------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC-ccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH----------
Confidence 457999999999999999999997643 222233 33333333444322 24789999999877644321
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcc----------hhhHHHHHHHH
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQDV 514 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~----------~~~~~~~~~~l 514 (666)
.+++.+|++|+|+|+++..+.++. .|+..+.+. +.|+++|+||+|+..... .... .++.
T Consensus 95 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~ 167 (205)
T 1gwn_A 95 ----LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS---YDQG 167 (205)
T ss_dssp ----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC---HHHH
T ss_pred ----hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCC---HHHH
Confidence 257899999999999987666654 466666663 789999999999964210 0000 0111
Q ss_pred HHHHhcCCCCCEEEEeCc-cCCCHHHHHHHHHHHH
Q 005979 515 REKLRALDWAPIVYSTAI-AGQSVDKIIVAAEMVD 548 (666)
Q Consensus 515 ~~~l~~~~~~~ii~vSAk-~g~gv~~L~~~i~~~~ 548 (666)
.+.....+..++++|||+ +|.|++++|..|.+..
T Consensus 168 ~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 ANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 222222334689999999 6899999999998654
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.8e-20 Score=208.21 Aligned_cols=164 Identities=19% Similarity=0.258 Sum_probs=126.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|++|+|||||+|+|++.. +.....+|+|.+.....+...++..++||||||+.+|..+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence 35799999999999999999999765 445577889998877666654677999999999988866542
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC-CCCCEEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAPIVY 528 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~-~~~~ii~ 528 (666)
++++.+|++|+|+|++++...+....+..+...++|+|+|+||+|+............. .....+... ..+++++
T Consensus 71 ---~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 71 ---RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELL-AYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp ---SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCCCCSSSSEEECC
T ss_pred ---HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHH-hhhhhHHhcCCCceEEE
Confidence 25678999999999999999999999999998999999999999997532211111110 000001111 2358999
Q ss_pred EeCccCCCHHHHHHHHHHHHH
Q 005979 529 STAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 529 vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+||++|.|+++|++.|....+
T Consensus 147 vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHT
T ss_pred EECCCCCCchhHHHHHHHhhh
Confidence 999999999999999987654
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=9e-19 Score=178.60 Aligned_cols=169 Identities=16% Similarity=0.187 Sum_probs=124.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCC-cccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
...+|+|+|++|||||||+|+|++.........++ +|+++..+.+.+.+..+.||||||+.+.......+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~-------- 92 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALY-------- 92 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHH--------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHH--------
Confidence 35689999999999999999999987555555555 889998888899999999999999987544332221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC---CCcEEEEec-cCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVN-KCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~---~~p~ilv~N-K~D~~ 316 (666)
..+.+.+...+..+|++|+|+|+.. ++..+..+.+++.+.+. ..|+++|+| |+|+.
T Consensus 93 -------------------~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 93 -------------------KEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp -------------------HHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred -------------------HHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 1223445556788999999999985 78887778777766321 467777777 99987
Q ss_pred ccchhh------------HHHHHhc--C-CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 317 RKGIMQ------------VSEFWSL--G-FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 317 ~~~~~~------------~~~~~~~--~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
...... ....... + +..+++||.+|.|+.+|++.|.+.++..
T Consensus 153 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 153 GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 543221 1111111 1 4448999999999999999999888753
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=8.5e-19 Score=190.54 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=114.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhcc---C----cc-c--------ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGE---D----RT-I--------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~---~----~~-~--------~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
..++|+++|++|+|||||+|+|++. . .+ . .....|+|.+.....+.. ++..+.||||||+.++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence 3579999999999999999999973 1 00 0 011457888876666653 6789999999999764
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
...+..+++.+|++|+|+|++++...+..+++..+...++| +|+|+||+|+... ....+....
T Consensus 89 --------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~--~~~~~~~~~ 152 (405)
T 2c78_A 89 --------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD--PELLDLVEM 152 (405)
T ss_dssp --------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC--HHHHHHHHH
T ss_pred --------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc--HHHHHHHHH
Confidence 23456678999999999999999999999999988888999 8999999999752 122333344
Q ss_pred HHHHHHhcCC----CCCEEEEeCccCCCH
Q 005979 513 DVREKLRALD----WAPIVYSTAIAGQSV 537 (666)
Q Consensus 513 ~l~~~l~~~~----~~~ii~vSAk~g~gv 537 (666)
++.+.+...+ ..|++++||++|.|+
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhh
Confidence 5555555544 379999999999873
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.78 E-value=8.2e-19 Score=169.03 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=104.2
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccccc-CCCcceeeeEeEEEec----CCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS-PISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~-~~~gtT~d~~~~~~~~----~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
+||+++|.+|||||||+|+|++....... ..++++.+.....+.. .....+.+|||||+.++..+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--------- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS---------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh---------
Confidence 69999999999999999999975322222 3344445544433321 134589999999986653321
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccC-CHHHH-HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACI-TEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~-t~~d~-~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~ 522 (666)
..+++.+|++++|+|++++. +.... .|+..+... +.|+++|+||+|+...... ........+.+....
T Consensus 74 -----~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 145 (184)
T 2zej_A 74 -----PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR---KACMSKITKELLNKR 145 (184)
T ss_dssp -----HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH---HHHHHHHHHHTTTCT
T ss_pred -----HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh---HHHHHHHHHHHHHhc
Confidence 23678899999999998863 23322 355555442 7899999999999653211 111123334455444
Q ss_pred CCC----EEEEeCccCC-CHHHHHHHHHHHHHh
Q 005979 523 WAP----IVYSTAIAGQ-SVDKIIVAAEMVDKE 550 (666)
Q Consensus 523 ~~~----ii~vSAk~g~-gv~~L~~~i~~~~~~ 550 (666)
+++ ++++||++|. |+++|++.|.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 555 9999999997 999999999876543
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=1.2e-18 Score=192.97 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=120.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccC------cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhh
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~------~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e 444 (666)
.++|+++|++|+|||||+|+|++.. .......+|+|.+.....+.+ ++..+.||||||+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~----------- 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADL----------- 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHH-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHH-----------
Confidence 4799999999999999999999765 134456678898887767765 7789999999998543
Q ss_pred HHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC---
Q 005979 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--- 521 (666)
Q Consensus 445 ~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~--- 521 (666)
...+..+++.+|++|+|+|++++...+..+.+..+...++|+|+|+||+|+.+. ...+...+++.+.+...
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~---~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT---EEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH---HHHHHHHHHHHHHHHHSSSG
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc---hhHHHHHHHHHHHHhhhccc
Confidence 344566889999999999999999999999888888889999999999999752 22333445555555433
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+++++||++|.|+++|++.|.+...
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2579999999999999999999988765
No 159
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=1.4e-18 Score=176.95 Aligned_cols=156 Identities=26% Similarity=0.354 Sum_probs=117.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|+++|.+|||||||+|+|+|.. ..++..+|+|.+...+.+.+.+..+.+|||||+........+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 71 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID------------- 71 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-------------
Confidence 579999999999999999999987 457889999999999888888899999999999864432210
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch-
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
+ ......+ ..+|++++|+|++.. .....+...+.. .+.|+++|+||+|+.....
T Consensus 72 ----------------e---~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 72 ----------------E---KIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILE--MEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp ----------------H---HHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTC
T ss_pred ----------------H---HHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHh--cCCCEEEEEECcCCCCccch
Confidence 0 1111222 579999999999863 223334455554 4899999999999754321
Q ss_pred -hhHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 -MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 -~~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..... ...+|++++++||++|.|+++|++.|.+.++
T Consensus 129 ~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 129 KIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 11122 2346789999999999999999999988765
No 160
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=2.2e-18 Score=172.15 Aligned_cols=167 Identities=20% Similarity=0.251 Sum_probs=114.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..++|+++|.+|||||||+|+|++... .+...+++|++.......+.+..+.+|||||+..........
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~---------- 96 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT---------- 96 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhh----------
Confidence 457999999999999999999999874 367788899998888878888999999999996422111100
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH---HHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA---ADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~---~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
.........+..+|++|+|+|+..+.+. ....++..+.....+.|+++|+||+|+...
T Consensus 97 -------------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 97 -------------------IEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp -------------------HHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred -------------------HHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 0001122335778999999999876442 234555556553347899999999998753
Q ss_pred chh------hHHHHHh-cC--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GIM------QVSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~~------~~~~~~~-~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
... ....+.. .+ ..++++||++|.|+.+|++.|.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 158 DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp -CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 221 1122322 34 5789999999999999999999887643
No 161
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=165.36 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=114.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||.........
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 76 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS----------- 76 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH-----------
Confidence 46899999999999999999998863 345566777777777777777 6789999999765433222
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
..+..+|++++|+|+..+.+... ..++..+.....+.|+++|+||+|+....
T Consensus 77 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 77 ---------------------------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK 129 (181)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC
T ss_pred ---------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc
Confidence 34578999999999987533322 12334444444578999999999987543
Q ss_pred hh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .... ....+++++++||++|.|++++++.|.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 21 1222 234577899999999999999999998877643
No 162
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=2.5e-19 Score=189.34 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=120.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.++|+++|.||||||||+|+|++.. ..+++++++|.++....+...++..+.||||||+.+..... ......
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~-------~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG-------VGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT-------TTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCccccccc-------chhHHH
Confidence 4589999999999999999999765 45688899999888777776445799999999985422111 111244
Q ss_pred HHHHHhhCCeEEEEeeccc---cCCHHHHH-HHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC
Q 005979 451 AFRAIRRSDVVALVIEAMA---CITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~---~~t~~d~~-i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~ 521 (666)
.+++++.+|++|+|+|+++ ..+.++.. |...+.. .++|+++|+||+|+.... . ..+.+.+.+..
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e----~~~~l~~~l~~- 302 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--E----NLEAFKEKLTD- 302 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--H----HHHHHHHHCCS-
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--H----HHHHHHHHhhc-
Confidence 5677888999999999986 33444443 5566665 378999999999996531 1 12233333322
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..+++++||++|.|+++|+..|.+.+.+
T Consensus 303 -~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 303 -DYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp -CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred -CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 1689999999999999999999877654
No 163
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.2e-18 Score=168.52 Aligned_cols=171 Identities=17% Similarity=0.129 Sum_probs=106.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+.+ ..+.+|||||.......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 80 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-------------- 80 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------------
Confidence 58999999999999999999987632 22333333344344444544 57899999998653221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~~ 318 (666)
....+..+|++|+|+|+..+.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 81 ------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 81 ------------------------TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp ------------------------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred ------------------------hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 2255788999999999976432221 12233333321 36899999999998543
Q ss_pred ch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhH
Q 005979 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSS 386 (666)
Q Consensus 319 ~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSS 386 (666)
.. .....+ ...++.++++||++|.|++++++.|.+.+...... .--+..|+||||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-------------~~~~~~n~gkSs 194 (195)
T 1x3s_A 137 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL-------------WESENQNSGPSS 194 (195)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG-------------TCC---------
T ss_pred ccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhh-------------hcccccCCCCCC
Confidence 22 122222 34567889999999999999999999887643210 001345999997
No 164
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.6e-19 Score=185.91 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=107.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|||||||+|+|++... +...+ |++.....+.. .+..+.||||||+.++..+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~------------- 225 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPL------------- 225 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEE-TTEEEEEEECC-----CCS-------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEec-CcEEEEEEECCCCHhHHHH-------------
Confidence 346999999999999999999997653 23334 33333344443 6779999999998765433
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHH-HHh---CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERI-EQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i-~~~---~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
...+++.+|++|+|+|+++..+..... ++..+ ... ++|+|||+||+|+...... +++...+........++
T Consensus 226 -~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 226 -WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNW 301 (329)
T ss_dssp -HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSSCE
T ss_pred -HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcCCC
Confidence 234788999999999998876655543 33333 322 7899999999999764322 22223222222233456
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++++|||++|.||++||+.|.+.+.
T Consensus 302 ~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 302 YIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=8.5e-19 Score=167.83 Aligned_cols=155 Identities=19% Similarity=0.076 Sum_probs=105.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.. ....+.+++.........+++ ..+.+|||||...+.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ----------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 3589999999999999999999765 234444555444455556666 4678999999876433222
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
..+..+|++++|+|....-+.... .+...+... ..+.|+++|+||+|+..
T Consensus 73 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 73 ---------------------------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp ---------------------------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred ---------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 235679999999999764222221 122222221 13789999999999864
Q ss_pred cchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... .... ....+.+++++||++|.|+.++++.|.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3211 1222 23457789999999999999999999988764
No 166
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.77 E-value=1.7e-18 Score=192.23 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=114.8
Q ss_pred CceEEEecCCCCChhHHHHHHhccCc------------------------------ccccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDR------------------------------TIVSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~------------------------------~~~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
.++|+++|++|+|||||+|+|++... ......+|+|.+.....+.. ++.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence 57999999999999999999986521 12233458898888877774 778
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-------CCHHHHHHHHHHHHhCC-cEEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-------~t~~d~~i~~~i~~~~~-pvIlv 492 (666)
.+.||||||+.++ ...+..+++.+|++|+|+|++++ +..+..+.+..+...+. |+|+|
T Consensus 112 ~~~iiDTPG~~~f--------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvv 177 (483)
T 3p26_A 112 NFTIVDAPGHRDF--------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIA 177 (483)
T ss_dssp EEEEECCCCCGGG--------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCcHHH--------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEE
Confidence 9999999999664 23456688999999999999987 45677777777777774 59999
Q ss_pred EecccCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHH
Q 005979 493 VNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKII 541 (666)
Q Consensus 493 ~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~ 541 (666)
+||+|+.+.. ....++..+.+...+...+ .++++++||++|.|++++.
T Consensus 178 iNK~Dl~~~~-~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 178 MNKMDNVDWS-QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp EECGGGGTTC-HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred EECcCcccch-HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 9999997632 2334444555555544333 4689999999999998653
No 167
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=4e-18 Score=185.03 Aligned_cols=164 Identities=19% Similarity=0.181 Sum_probs=114.4
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeee--------------EeEEEec----CCCceEEEEEcCCC
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDA--------------IDTEFTG----PEGQKFRLIDTAGI 430 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~--------------~~~~~~~----~~~~~~~liDTpG~ 430 (666)
...++|+++|++|+|||||+|+|++.........+.++... ....+.. .....+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 34689999999999999999999975422211111111110 0000000 01157999999998
Q ss_pred ccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-CHHHHHHHHHHHHhC-CcEEEEEecccCCCCcchhhHH
Q 005979 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTAT 508 (666)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-t~~d~~i~~~i~~~~-~pvIlv~NK~Dl~~~~~~~~~~ 508 (666)
.++ ...+..+++.+|++|+|+|++++. ..+...++..+...+ +|+|+|+||+|+.+.. ...
T Consensus 86 ~~~--------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~---~~~ 148 (403)
T 3sjy_A 86 EVL--------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE---EAL 148 (403)
T ss_dssp GGG--------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH---HHH
T ss_pred HHH--------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH---HHH
Confidence 654 234566889999999999999987 778888888777766 4899999999997642 122
Q ss_pred HHHHHHHHHHhcC--CCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 509 YYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 509 ~~~~~l~~~l~~~--~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+++.+.+... ..++++++||++|.|+++|++.|.+...
T Consensus 149 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 149 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 3334455555433 3578999999999999999999986543
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=6e-18 Score=181.02 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=120.6
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
+|+++|++|+|||||+++|+ ..|+|.+.....+.. ++..+.||||||+.+|. ..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~--------------~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTL--------------KSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCH--------------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHH--------------HHHH
Confidence 89999999999999999998 446777777766764 67789999999997752 2345
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcE-EEEEe-cccCCCCcchhhHHHHHHHHHHHHhcC--CCCCEEE
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGC-LIVVN-KWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIVY 528 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pv-Ilv~N-K~Dl~~~~~~~~~~~~~~~l~~~l~~~--~~~~ii~ 528 (666)
.+++.+|++|+|+| ..+...+..+++..+...++|. |+|+| |+|+ +. ...+...+++.+.+... ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~---~~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM---HAIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH---HHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH---HHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 67899999999999 8898999999998888889998 99999 9999 42 22233345566666544 3479999
Q ss_pred --EeCcc---CCCHHHHHHHHHHHHHh
Q 005979 529 --STAIA---GQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 529 --vSAk~---g~gv~~L~~~i~~~~~~ 550 (666)
+||++ |.|+++|++.|.+....
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhccc
Confidence 99999 99999999999877653
No 169
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=1.4e-18 Score=178.09 Aligned_cols=156 Identities=23% Similarity=0.350 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.||||||||+|+|+|.. ..++++||+|.+...+.+.+ +..+.+|||||+.........
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~------------ 68 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE------------ 68 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH------------
Confidence 3579999999999999999999986 56889999999988877766 788999999999864322110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
+.....++ ..+|++++|+|++.. .....+...+.. .+.|+++|+||+|+.....
T Consensus 69 --------------------e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 69 --------------------AKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIE--TGIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp --------------------HHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHH--TCSCEEEEEECHHHHHHTT
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHh--cCCCEEEEEEChhhCCcCC
Confidence 01122233 369999999999752 222334444544 5899999999999754311
Q ss_pred --hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 --MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 --~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.....+ ..+|++++++||++|.|+++|++.|.+.+.
T Consensus 125 ~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 111222 245788999999999999999999987654
No 170
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=2.6e-19 Score=196.52 Aligned_cols=160 Identities=28% Similarity=0.393 Sum_probs=116.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|+||||||||+|+|++...+++.+.+++|++.....+.+++..+.+|||||+.......+ .+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve----~~-------- 292 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE----KI-------- 292 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH----HH--------
Confidence 579999999999999999999987778899999999998888889999999999999965321111 00
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhH
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~ 323 (666)
..+.+...+..+|++|+|+|+..+.+..+..+++.+. .+|+++|+||+|+........
T Consensus 293 ------------------gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~~ 350 (462)
T 3geh_A 293 ------------------GVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLITS 350 (462)
T ss_dssp ------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGSTT
T ss_pred ------------------HHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhHH
Confidence 0123445668899999999999999888877777664 479999999999976543221
Q ss_pred HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 324 ~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
...+..+.+++++||++|.|+++|++.|.+.+..
T Consensus 351 ~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 351 LEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred HHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 0001124478999999999999999999887764
No 171
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.77 E-value=6.8e-19 Score=187.78 Aligned_cols=218 Identities=18% Similarity=0.263 Sum_probs=135.7
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcc-----cccCCCc------------
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG------------ 404 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~-----~~~~~~g------------ 404 (666)
..+.+++..+.+.+...... .....++|+|+|.+|||||||+|+|+|.... .+...|+
T Consensus 7 ~~l~~~~~~l~d~l~~~g~~-----~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~ 81 (353)
T 2x2e_A 7 EDLIPLVNRLQDAFSAIGQN-----ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYA 81 (353)
T ss_dssp CSCHHHHHHHHHHHHTTTCG-----GGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEE
T ss_pred HHHHHHHHHHHHHHHHcCCC-----CCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccce
Confidence 34556666666666543321 1234689999999999999999999987654 4444455
Q ss_pred ----------ceeee-----------------------EeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHH
Q 005979 405 ----------TTRDA-----------------------IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (666)
Q Consensus 405 ----------tT~d~-----------------------~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (666)
+|++. ....+..+++..+.||||||+.+...-... ..........+
T Consensus 82 ~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~-~~~~~~~~~~~ 160 (353)
T 2x2e_A 82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQP-PDIEFQIRDML 160 (353)
T ss_dssp EETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCC-TTHHHHHHHHH
T ss_pred eeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCc-hhHHHHHHHHH
Confidence 33321 001111123568999999998753210000 11122223445
Q ss_pred HHHHhhC-CeEEEEeeccccCCHHHH-HHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc--CCCCCEE
Q 005979 452 FRAIRRS-DVVALVIEAMACITEQDC-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LDWAPIV 527 (666)
Q Consensus 452 ~~~i~~a-dvvllViDa~~~~t~~d~-~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~--~~~~~ii 527 (666)
..+++.+ +++|+|+|+...+..++. .+++.+...++|+|+|+||+|+.+.... ... .+...... .++.+++
T Consensus 161 ~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~----~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 161 MQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARD----VLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHH----HHTTCSSCCTTCEEECC
T ss_pred HHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh-HHH----HHhCCcccccCCceEEE
Confidence 5666555 466667788776666665 3777777778999999999999764321 111 11111111 2345788
Q ss_pred EEeCccCCCHHHHHHHHHHH---------HHhcccCCCchhHHHHHHHHHHc
Q 005979 528 YSTAIAGQSVDKIIVAAEMV---------DKERSRRLSTATINQVVQEAVAF 570 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~---------~~~~~~~i~t~~ln~~l~~~~~~ 570 (666)
++||++|.|+++|++.+.+. +.....++++..|+.++++.+..
T Consensus 236 ~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~ 287 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 287 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred eCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHH
Confidence 99999999999999999763 22334667778888888876654
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=2.5e-18 Score=186.27 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=120.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCc------c---------cccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDR------T---------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~------~---------~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~ 435 (666)
.++|+++|++|+|||||+++|++... + ......|+|.+.....+.. ++..+.||||||+.++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f-- 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADY-- 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHH--
Confidence 36899999999999999999996410 0 0112457888876655653 6789999999998543
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHHH
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDV 514 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~l 514 (666)
...+..+++.+|++|+|+|++++...+..+.+..+...++| +|+|+||+|+... ....+...+++
T Consensus 80 ------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~--~~~~~~~~~~~ 145 (397)
T 1d2e_A 80 ------------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD--SEMVELVELEI 145 (397)
T ss_dssp ------------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC--HHHHHHHHHHH
T ss_pred ------------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCC--HHHHHHHHHHH
Confidence 23455678899999999999999999999888888888999 7899999999752 12233344455
Q ss_pred HHHHhcCC----CCCEEEEeCccCCC----------HHHHHHHHHHHH
Q 005979 515 REKLRALD----WAPIVYSTAIAGQS----------VDKIIVAAEMVD 548 (666)
Q Consensus 515 ~~~l~~~~----~~~ii~vSAk~g~g----------v~~L~~~i~~~~ 548 (666)
.+.+...+ .+|++++||++|.| +.+|++.|.+..
T Consensus 146 ~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 55555544 37999999999875 677777776543
No 173
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.63 E-value=3.5e-20 Score=181.57 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
+.++|+++|.+|||||||+|+|++.. + .....+++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL----------- 94 (204)
Confidence 35799999999999999999999654 2 334445555555444443 33 35679999998765332
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhh-HH-----HHHHHHHHH
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQT-AT-----YYEQDVREK 517 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~-~~-----~~~~~l~~~ 517 (666)
...+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+........ .. .........
T Consensus 95 ---~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 95 ---RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 22367899999999999987666665 466666655 799999999999975321100 00 001111112
Q ss_pred HhcCCCC-CEEEEeCccCCCHHHHHHHHHHH
Q 005979 518 LRALDWA-PIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 518 l~~~~~~-~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+....+. +++++||++|.|++++|+.|.+.
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 2222234 89999999999999999988653
No 174
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=1.7e-18 Score=187.79 Aligned_cols=162 Identities=23% Similarity=0.307 Sum_probs=120.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe-eEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...++|+++|++|+|||||+|+|++.....++..+++|.+.....+.+.+. .+.+|||||+.++.......
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~-------- 103 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR-------- 103 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC--------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH--------
Confidence 345689999999999999999999998777888999999999988888775 89999999998754432210
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
.+.+...+..+|++|+|+|+ +....+..++.++++ .+.|+++|+||+|+....
T Consensus 104 -----------------------~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 104 -----------------------VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp -----------------------HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCC
T ss_pred -----------------------HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCcc
Confidence 13455678899999999999 677888888888887 489999999999998754
Q ss_pred hhhHHHHH--hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 IMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~~~~~~~~--~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.......+ .++++++++||++|.|+++|++.|.+.++.
T Consensus 157 ~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 157 AEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 43222222 246789999999999999999999988864
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=4.9e-18 Score=186.14 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=113.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccccc----------CC----------------------CcceeeeEeEEEecCC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS----------PI----------------------SGTTRDAIDTEFTGPE 418 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~----------~~----------------------~gtT~d~~~~~~~~~~ 418 (666)
.++|+++|++|+|||||+|+|++....... .. .|+|.+.....+.. +
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~ 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-A 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-S
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-C
Confidence 479999999999999999999865422111 12 24455544444543 6
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC-cEEEEEeccc
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWD 497 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~-pvIlv~NK~D 497 (666)
+..+.||||||+.++. ..+..+++.+|++|+|+|++++...+..+++..+...+. |+|+|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f~--------------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQYT--------------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGGH--------------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred CceEEEEECCChHHHH--------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence 6789999999987652 234457899999999999999999999888888877786 5999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHHHH
Q 005979 498 TIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIVA 543 (666)
Q Consensus 498 l~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~~~ 543 (666)
+.+.. ....+...+++.+.+...+ ..+++++||++|.|+++++..
T Consensus 169 l~~~~-~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 169 LNGFD-ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp TTTSC-HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred CCccc-HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 97532 2223334455555555544 378999999999999886543
No 176
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=2.9e-18 Score=181.16 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=121.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+.|+|+|.+|||||||+|+|++.+ ..+.+++++|.+...+.+.+.+ ..+.++||||+.........
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~----------- 225 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG----------- 225 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-----------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-----------
Confidence 5789999999999999999999876 4568899999999998888876 88999999998653221111
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC---CCCHHH-HHHHHHHHhh---cCCCcEEEEeccCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA---GLTAAD-EEIADWLRKN---YMDKFIILAVNKCE 314 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~---~~~~~d-~~i~~~l~~~---~~~~p~ilv~NK~D 314 (666)
+...+.+.+.++|++|+|+|++. .-...+ ..+...|... ..++|+++|+||+|
T Consensus 226 --------------------l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 226 --------------------LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp --------------------THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred --------------------hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 12345677889999999999975 222222 2344455542 24789999999999
Q ss_pred CCccchhhHHHH-HhcC--CCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 315 SPRKGIMQVSEF-WSLG--FSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 315 ~~~~~~~~~~~~-~~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
+..... ....+ ..+. .+++++||+++.|+++|++.|.+.+.+..
T Consensus 286 l~~~~e-~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 286 MPEAAE-NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHH-HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCCCHH-HHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 976432 12222 2233 57899999999999999999999887543
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=170.97 Aligned_cols=177 Identities=15% Similarity=0.190 Sum_probs=110.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCC--cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS--GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~--gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+|+|++... .....+ ++|++.....+.. ++..+.||||||+.+...-. .......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~---~~~~~~~ 102 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPN---AETSKEI 102 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----C---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCH---HHHHHHH
Confidence 457999999999999999999998765 344444 7788877766664 78899999999987642210 1112222
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH-----hCCcEEEEEecccCCCCcchhh-HHHHHHHHHHHHhcC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQT-ATYYEQDVREKLRAL 521 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~-~~~~~~~l~~~l~~~ 521 (666)
......+++.+|++|+|+|+++ ++..+..++.++.+ ..+|+++|+||+|+........ .....+.+...+..+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 3333445567899999999974 55566666666643 3579999999999976432211 111111233333333
Q ss_pred CCCCEEEEeCccC-----CCHHHHHHHHHHHHHhccc
Q 005979 522 DWAPIVYSTAIAG-----QSVDKIIVAAEMVDKERSR 553 (666)
Q Consensus 522 ~~~~ii~vSAk~g-----~gv~~L~~~i~~~~~~~~~ 553 (666)
+ ..++++++..+ .|+.+|+..|.+...+...
T Consensus 182 ~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g 217 (239)
T 3lxx_A 182 G-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE 217 (239)
T ss_dssp S-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred C-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 3 45777766643 6899999999888765433
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=2.1e-17 Score=176.22 Aligned_cols=169 Identities=22% Similarity=0.247 Sum_probs=109.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
.+.|+++|.+|||||||+|+|++.. ..+.+.+++|+|.....+.+ +|..+.+|||||+.+..+. ...+. ...
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~----~lve~--f~~ 250 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPP----QIVDA--FFV 250 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEE-TTEEEEEEECCCBCSSCCG----GGHHH--HHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCCH----HHHHH--HHH
Confidence 3459999999999999999999876 46788899999998888876 6789999999998553111 11232 345
Q ss_pred HHHHHhhCCeEEEEeeccccC--CHHHHH-HHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACI--TEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~--t~~d~~-i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
+...+..+|++++|+|++++. ...... +...+.. .++|+|+|+||+|+.+........ ....+...+. ....
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~~~l~~~l~-~~~~ 328 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD-LVEKLSKELY-SPIF 328 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHH-HHHHHHHHHC-SCEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHH-HHHHHHHHhc-CCCC
Confidence 666789999999999998764 222222 2333433 368999999999997643111111 1111222220 1234
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++++||++|.|+++|++.|.+...
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhc
Confidence 6899999999999999999987654
No 179
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.75 E-value=4.4e-18 Score=179.24 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=115.0
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|||||||+|++++.. ....+.+|+.+.....+.. ++. .+.+|||||+.++..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------- 220 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLR--------- 220 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTG---------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHH---------
Confidence 345899999999999999999999654 2455666777776666654 555 45699999997764432
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHH--HHHHHHHHh--CCcEEEEEecccCCCCcchhhHHHH---------HHH
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQD 513 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~--~i~~~i~~~--~~pvIlv~NK~Dl~~~~~~~~~~~~---------~~~ 513 (666)
..+++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+...... .+.+ ...
T Consensus 221 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 221 -----PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT--IEKLKEKKLTPITYPQ 293 (332)
T ss_dssp -----GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHH--HHHHHHTTCCCCCHHH
T ss_pred -----HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccch--hhhccccccccccHHH
Confidence 1257899999999999987666665 366666665 8999999999999653210 0000 111
Q ss_pred HHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+.....+..++++|||++|.|++++|+.|.+..
T Consensus 294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 22222233334899999999999999999998654
No 180
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=8.3e-18 Score=165.30 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=112.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||.......
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------- 85 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI------------- 85 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------------
Confidence 4689999999999999999999876 3344556667777666777777 57999999998653322
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
+...+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 86 -------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 140 (213)
T 3cph_A 86 -------------------------TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140 (213)
T ss_dssp -------------------------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC
T ss_pred -------------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1245688999999999976432221 1233333332 236899999999998532
Q ss_pred ch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ...+++++++||++|.|+.++++.|.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 21 112222 23577899999999999999999998877643
No 181
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.5e-18 Score=179.71 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=106.0
Q ss_pred hhcccchhhhhhhhhhhccc----ccccCCCCCCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee
Q 005979 133 IIQDETDDRKDSGKKQKKRK----TTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW 208 (666)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~ 208 (666)
+++++++++.++....+.+. .......+.+.++|+|||.||||||||||+|++.+ +.++++|++|+++..+.+.+
T Consensus 38 lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~ 116 (376)
T 4a9a_A 38 LKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRY 116 (376)
T ss_dssp HHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEe
Confidence 44455556666544333222 22334566778899999999999999999999987 77899999999999999999
Q ss_pred cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH
Q 005979 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (666)
Q Consensus 209 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~ 288 (666)
.+.+++++||||+......... +-++++..+++||++++|+|+.+++..
T Consensus 117 ~~~~i~l~D~pGl~~~a~~~~~-------------------------------~g~~~l~~i~~ad~il~vvD~~~p~~~ 165 (376)
T 4a9a_A 117 KGAKIQMLDLPGIIDGAKDGRG-------------------------------RGKQVIAVARTCNLLFIILDVNKPLHH 165 (376)
T ss_dssp TTEEEEEEECGGGCCC-----C-------------------------------HHHHHHHHHHHCSEEEEEEETTSHHHH
T ss_pred CCcEEEEEeCCCccCCchhhhH-------------------------------HHHHHHHHHHhcCccccccccCccHHH
Confidence 9999999999999753221111 236678889999999999999865432
Q ss_pred HHHHHHHHHHhh---cCCCcEEEEeccCCCC
Q 005979 289 ADEEIADWLRKN---YMDKFIILAVNKCESP 316 (666)
Q Consensus 289 ~d~~i~~~l~~~---~~~~p~ilv~NK~D~~ 316 (666)
.+ .+...|... ...+|.++++||+|..
T Consensus 166 ~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 166 KQ-IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH-HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HH-HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 21 222233321 1357788888998863
No 182
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=6.5e-18 Score=173.46 Aligned_cols=158 Identities=31% Similarity=0.399 Sum_probs=117.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|++|||||||+|+|+|.. ..++..+++|.+...+.+.+.+..+.+|||||+..+......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------ 69 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID------------ 69 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH------------
Confidence 4589999999999999999999987 478899999999999999999999999999999864332110
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC-CcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMD-KFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~-~p~ilv~NK~D~~~~~ 319 (666)
. ..+...+ ..+|++++|+|+..+ .....+...+.. .+ .|+++|+||+|+....
T Consensus 70 -----------------~---~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 70 -----------------E---LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFE--MEVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp -----------------H---HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHH--TTCCSEEEEEECHHHHHHH
T ss_pred -----------------H---HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHh--cCCCCEEEEEEChhcCccc
Confidence 0 1112222 679999999999863 222333334444 35 9999999999975421
Q ss_pred hh--hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 IM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~~--~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .... ...+|++++++||.+|.|+.+|++.|.+.+..
T Consensus 126 ~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 126 GAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp TCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 10 1111 23467899999999999999999999887653
No 183
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=9.3e-18 Score=172.60 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=105.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccC-------CCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIME 233 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 233 (666)
..+|+++|++|+|||||+|+|++........ .++++.+.....+.+++. .+.||||||+.+.......
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~--- 84 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC--- 84 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT---
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh---
Confidence 4689999999999999999999987544332 334444544444455553 8999999999764332221
Q ss_pred hhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHh-------------ccEEEEEecC-CCCCCHHHHHHHHHHHh
Q 005979 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDG-QAGLTAADEEIADWLRK 299 (666)
Q Consensus 234 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~-------------ad~il~VvD~-~~~~~~~d~~i~~~l~~ 299 (666)
...+.+++..++..++.. +|+++++++. .+++...+..+++.+..
T Consensus 85 ---------------------~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 85 ---------------------WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 123445566666666665 7788888865 45899999998888876
Q ss_pred hcCCCcEEEEeccCCCCccchhhH------HHHHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 300 NYMDKFIILAVNKCESPRKGIMQV------SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 300 ~~~~~p~ilv~NK~D~~~~~~~~~------~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
++|+++|+||+|+........ ..+...++.++++||.++.|+.+|++.|.+.++
T Consensus 144 ---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 144 ---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp ---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred ---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 799999999999875432211 123346788999999999999999999877654
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=6.6e-19 Score=199.47 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=93.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccc------------------------------cCCCcceeeeEeEEEecCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV------------------------------SPISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~------------------------------~~~~gtT~d~~~~~~~~~~~ 419 (666)
..++|+++|++|+|||||+|+|++...... ...+|+|++.....+.. ++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~ 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DK 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CC
Confidence 357899999999999999999975322221 12568999988877765 67
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-----C--CHHHHHHHHHHHHhCCc-EEE
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-----I--TEQDCRIAERIEQEGKG-CLI 491 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-----~--t~~d~~i~~~i~~~~~p-vIl 491 (666)
..+.||||||+.++.... ..+++.+|++|||||++++ + ..+....+..+...++| +|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~--------------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM--------------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp ----CCEEESSSEEEEEC--------------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred eEEEEEECCChHHHHHHH--------------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 899999999999875532 2256789999999999985 3 67788888888888987 999
Q ss_pred EEecccCCCCcchhhHHHHHHHHHHHH-hcCCC----CCEEEEeCccCCCHH
Q 005979 492 VVNKWDTIPNKNQQTATYYEQDVREKL-RALDW----APIVYSTAIAGQSVD 538 (666)
Q Consensus 492 v~NK~Dl~~~~~~~~~~~~~~~l~~~l-~~~~~----~~ii~vSAk~g~gv~ 538 (666)
|+||+|+... .....+.....+...+ ...+. ++++++||++|.|+.
T Consensus 321 viNKiDl~~~-~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 321 SVNKLDLMSW-SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEECGGGGTT-CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred EEeccccccc-cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9999999752 2234445556666666 44333 489999999999997
No 185
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=8.5e-18 Score=160.39 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.........++++.+.......+++. .+.+|||||.....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------------- 74 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR--------------- 74 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH---------------
Confidence 3589999999999999999999887443344555666655555566664 78999999976422
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-~~~p~ilv~NK~D~~~~ 318 (666)
..+...+..+|++++|+|+..+.+..+ ..++..+.... .+.|+++|+||+|+...
T Consensus 75 -----------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 75 -----------------------SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp ---------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred -----------------------HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 122345688999999999986433222 12333333322 47899999999998753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...+++++++||++|.|++++++.|.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 112222 2357789999999999999999999887764
No 186
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1.1e-17 Score=161.08 Aligned_cols=159 Identities=28% Similarity=0.392 Sum_probs=116.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|||||||+|+|++.. ..+...+++|.+...+.+.+++..+.+|||||+........ .
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~---------- 73 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--D---------- 73 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH--H----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH--H----------
Confidence 3589999999999999999999976 56678899999988888888899999999999876432110 0
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
. ......+ ..+|++++|+|... ......+...+.. .+.|+++|+||+|+.....
T Consensus 74 -----------------~---~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 74 -----------------E---IIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLME--MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp -----------------H---HHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTT
T ss_pred -----------------H---HHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHh--cCCCEEEEEEhhhcccccc
Confidence 0 1111222 35999999999874 1222334444444 4789999999999754321
Q ss_pred --hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 --MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 --~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.....+ ..++.+++++||++|.|+.+|++.|.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 112222 23467899999999999999999999887653
No 187
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.75 E-value=9.9e-18 Score=157.39 Aligned_cols=150 Identities=21% Similarity=0.274 Sum_probs=104.0
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|.+|||||||+|+|++.... ...| |.......+.+.+..+.+|||||+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------------------- 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------------------- 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh--------------------
Confidence 6999999999999999999976532 2233 334445566677889999999998641
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEeccCCCCccch-
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~- 320 (666)
.......+..+|++++|+|+..+-+.. ...+...+.. ...+.|+++|+||+|+.....
T Consensus 58 ------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 119 (164)
T 1r8s_A 58 ------------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119 (164)
T ss_dssp ------------------HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH
T ss_pred ------------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH
Confidence 123345678999999999998753322 2223333321 124789999999999976421
Q ss_pred hhHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 ~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
........ .+++++++||++|.|++++++.|.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 11111111 2335899999999999999999988765
No 188
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=196.09 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=116.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccC------------------------------CCcceeeeEeEEEecCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSP------------------------------ISGTTRDAIDTEFTGPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~------------------------------~~gtT~d~~~~~~~~~~~ 419 (666)
..++|+++|++|+|||||+|+|++........ .+|+|++.....+.. ++
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence 35799999999999999999999764332221 368899988888875 78
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-------CCHHHHHHHHHHHHhCCc-EEE
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGKG-CLI 491 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-------~t~~d~~i~~~i~~~~~p-vIl 491 (666)
..+.||||||+.++. ..+..+++.+|++|+|+|++++ ...+....+..+...+.| +|+
T Consensus 245 ~~~~iiDTPG~e~f~--------------~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV--------------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp CEEEEEECCSSSCHH--------------HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEECCCCcccH--------------HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 899999999997642 3445578899999999999886 345666677666667755 999
Q ss_pred EEecccCCCCcchhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHH
Q 005979 492 VVNKWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 492 v~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L 540 (666)
|+||+|+.+.. ....+.....+...+...+ .+++++|||++|.|+.++
T Consensus 311 VvNKiDl~~~~-~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWS-QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTC-HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchh-HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999997632 2333444555555554433 478999999999999876
No 189
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=1.2e-18 Score=190.88 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=109.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc------------------------------ccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
.++|+++|++|+|||||+++|++..... .....|+|++.....+.. ++.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCe
Confidence 4799999999999999999998641110 111467888877766664 678
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc-------CCHHHHHHHHHHHHhCC-cEEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~-------~t~~d~~i~~~i~~~~~-pvIlv 492 (666)
.+.||||||+.++. ..+..+++.+|++|+|+|++++ +..+..+.+..+...+. |+|+|
T Consensus 85 ~~~iiDtpG~~~f~--------------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivv 150 (435)
T 1jny_A 85 FFTIIDAPGHRDFV--------------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVA 150 (435)
T ss_dssp EEEECCCSSSTTHH--------------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEE
T ss_pred EEEEEECCCcHHHH--------------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 99999999997652 2355678999999999999987 55567777777777786 59999
Q ss_pred EecccCCCCc-chhhHHHHHHHHHHHHhcCC----CCCEEEEeCccCCCHHHHHH
Q 005979 493 VNKWDTIPNK-NQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIV 542 (666)
Q Consensus 493 ~NK~Dl~~~~-~~~~~~~~~~~l~~~l~~~~----~~~ii~vSAk~g~gv~~L~~ 542 (666)
+||+|+.+.. .....+...+++.+.+...+ .++++++||++|.|+.+++.
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 9999997631 12233445556666665554 37899999999999977653
No 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.75 E-value=1.3e-17 Score=188.07 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=109.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccc--------------cCCCcceeeeEeEEEecC--C--CceEEEEEcCCCcc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV--------------SPISGTTRDAIDTEFTGP--E--GQKFRLIDTAGIRK 432 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~--------------~~~~gtT~d~~~~~~~~~--~--~~~~~liDTpG~~~ 432 (666)
.++|+++|++++|||||+++|+....... ....|+|.......+.+. + +..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 46899999999999999999986321111 113466766555555432 2 25789999999977
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
|.. ...++++.+|++|+|+|++++.+.+....+..+...++|+|+|+||+|+.... .+...+
T Consensus 84 F~~--------------ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~----~~~v~~ 145 (599)
T 3cb4_D 84 FSY--------------EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD----PERVAE 145 (599)
T ss_dssp GHH--------------HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC----HHHHHH
T ss_pred HHH--------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc----HHHHHH
Confidence 532 34567899999999999999999999998888888899999999999997642 122334
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
.+.+.+. ....+++++||++|.|+++|++.|.+...
T Consensus 146 ei~~~lg-~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 146 EIEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHTC-CCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHhC-CCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 4444432 22346999999999999999999986643
No 191
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=159.71 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=114.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||......
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 80 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------------- 80 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------------
Confidence 4689999999999999999999876 3445566777777777777777 5689999999765322
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 81 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 81 ------------------------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp ------------------------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ------------------------hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 12356788999999999986432221 2233333332 247899999999998754
Q ss_pred chh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
... .... ....+++++++||++|.|++++++.|.+.+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 321 1222 2346779999999999999999999998887543
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.74 E-value=4.6e-18 Score=194.61 Aligned_cols=229 Identities=19% Similarity=0.245 Sum_probs=142.3
Q ss_pred eeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC----------
Q 005979 334 LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------- 403 (666)
Q Consensus 334 i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~---------- 403 (666)
-..++..+.|+.+|+..+.+......... .......++|+|+|.+|+|||||+|+|+|...+..+..+
T Consensus 16 ~~~~~~~~~~~~~li~~inkl~d~l~~lg--~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l 93 (772)
T 3zvr_A 16 PRGSHMGNRGMEDLIPLVNRLQDAFSAIG--QNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 93 (772)
T ss_dssp ---------CGGGHHHHHHHHHHHHHTTT--CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEE
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhcC--ccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEe
Confidence 34677888998888877654433222110 011234689999999999999999999997643333221
Q ss_pred ----------------------------------------cceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchh
Q 005979 404 ----------------------------------------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTT 443 (666)
Q Consensus 404 ----------------------------------------gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 443 (666)
+++.+.+...+..++...+.||||||+.+...-.. ...+
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~q-p~di 172 (772)
T 3zvr_A 94 VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ-PPDI 172 (772)
T ss_dssp EECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCC-CCHH
T ss_pred ecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCC-cHHH
Confidence 12222233333334455799999999976321000 0111
Q ss_pred hHHHHHHHHHHH-hhCCeEEEEeeccccCCHHHH-HHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHh--
Q 005979 444 EALSVNRAFRAI-RRSDVVALVIEAMACITEQDC-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-- 519 (666)
Q Consensus 444 e~~~~~~~~~~i-~~advvllViDa~~~~t~~d~-~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~-- 519 (666)
.......+..++ ..+|++|+|+|++.+++.++. .+++++...++|+|+|+||+|+.+..... ..+ ....+.
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~i---l~~~~~~l 247 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDV---LENKLLPL 247 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHH---HTTCSSCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh--HHH---HHHHhhhh
Confidence 122223334444 578999999999988877776 78888888899999999999998653321 111 111111
Q ss_pred cCCCCCEEEEeCccCCCHHHHHHHHHHH---------HHhcccCCCchhHHHHHHHHHHc
Q 005979 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMV---------DKERSRRLSTATINQVVQEAVAF 570 (666)
Q Consensus 520 ~~~~~~ii~vSAk~g~gv~~L~~~i~~~---------~~~~~~~i~t~~ln~~l~~~~~~ 570 (666)
..++.+++++||++|.|+++|++.|.+. +.....+..+..++.++++.+..
T Consensus 248 ~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 248 RRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp SSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred hccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHH
Confidence 1245688999999999999999999863 23344677788888888887654
No 193
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=1.3e-17 Score=157.59 Aligned_cols=153 Identities=19% Similarity=0.260 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++..... ..+ |.......+.+++..+.+|||||.......
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------------- 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT--TIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY--------------- 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC--cCC--cCccceEEEEECCEEEEEEECCCChhhhHH---------------
Confidence 4689999999999999999999876432 222 334445566778899999999998653211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|+..+.+.. ...+...+... ..+.|+++|+||+|+....
T Consensus 68 -----------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 68 -----------------------WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp -----------------------GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -----------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 113457899999999998764433 23333444321 2578999999999987642
Q ss_pred h-hhHHHHH------hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ....... ..+++++++||++|.|++++++.|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 125 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1 1121211 124468999999999999999999887753
No 194
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=162.55 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++....... ...|.......+.+++..+.+|||||.......
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------------- 83 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL--------------- 83 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGG---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHH---------------
Confidence 468999999999999999999987522222 223445556667788899999999997653211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHhhc---CCCcEEEEeccCCCCc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKNY---MDKFIILAVNKCESPR 317 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~~~---~~~p~ilv~NK~D~~~ 317 (666)
....+..+|++++|+|+..+.+.. ...+...+.... .+.|+++|+||+|+..
T Consensus 84 -----------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 84 -----------------------WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp -----------------------GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred -----------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 124468899999999998642222 223333333221 3789999999999975
Q ss_pred cc-hhhHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KG-IMQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~-~~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. ......+.. .++.++++||++|.|+++|++.|.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 141 AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 42 122222221 24578999999999999999999887754
No 195
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=1.3e-17 Score=157.15 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=105.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcc-cccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|.+|||||||+|+|++.... ...+..+.+.... ...+.+ ..+.+|||||+.....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~-------------- 70 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFRA-------------- 70 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGGG--------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhhc--------------
Confidence 57999999999999999999987632 2233344443332 334443 6799999999864221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..+|++++|+|+..+.+... ..++..+... ....|+++|+||+|+...
T Consensus 71 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 71 ------------------------LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp ------------------------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred ------------------------ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 12255788999999999986543332 2344444432 356789999999999753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+.+++++||++|.|+++|++.|.+.+.
T Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 21 112222 245678999999999999999999987764
No 196
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=7.7e-17 Score=172.11 Aligned_cols=167 Identities=26% Similarity=0.392 Sum_probs=121.3
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
...++|+++|.+|||||||+|+|++.. ..+...+++|.+...+.+...+..+.+|||||+.........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---------- 233 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN---------- 233 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSC----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhh----------
Confidence 346799999999999999999999987 566788899999888887778889999999999653211100
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHH-HHhccEEEEEecCCCCC--CHHH-HHHHHHHHhhcCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAA-IEESCVIIFLVDGQAGL--TAAD-EEIADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~-i~~ad~il~VvD~~~~~--~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
.++.+...+ ...+|++|+|+|+..+. .... ..++..+.....++|+++|+||+|+.
T Consensus 234 --------------------~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 234 --------------------EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp --------------------HHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred --------------------HHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 011222222 34699999999987643 4433 34555555433379999999999997
Q ss_pred ccchh-hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 317 RKGIM-QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 317 ~~~~~-~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
..... ....+ ...+.+++++||++|.|+++|++.|.+.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 294 DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp CHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 64322 12222 24567899999999999999999999887643
No 197
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=7.9e-18 Score=158.60 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=102.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccc-ccCCCCcccceeEEEEeec--CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.+|+++|.+|||||||+|+|++..... .....+.+. ......+. +..+.+|||||.....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~--------------- 69 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH--------------- 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh---------------
Confidence 579999999999999999999865322 122223332 22333343 4679999999976421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+..+.+... ..++..+.. ...+.|+++|+||+|+...
T Consensus 70 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 70 -----------------------SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp -----------------------GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 112356788999999999986533222 122233332 2347889999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+++++++||++|.|+++|++.|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 122222 245678899999999999999999987764
No 198
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=1.7e-17 Score=157.89 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------------- 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------------- 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH---------------
Confidence 5899999999999999999998753 334455666666666666766 4789999999764221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++++|+|+..+.+... ..++..+.. ...+.|+++|+||+|+....
T Consensus 79 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 79 -----------------------LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp -----------------------GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred -----------------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 12245678999999999976422211 122222222 22478999999999986532
Q ss_pred hh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .... ....+++++++||++|.|++++++.|.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 21 1122 23457789999999999999999999887653
No 199
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.5e-17 Score=160.21 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.....
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~---------------- 75 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRS---------------- 75 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CG----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHH----------------
Confidence 4689999999999999999999776443333333 33445567889999999999865221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++++|+|+..+-+... ..+...+... ..+.|+++|+||+|+....
T Consensus 76 ----------------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (187)
T 1zj6_A 76 ----------------------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133 (187)
T ss_dssp ----------------------GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred ----------------------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC
Confidence 11245688999999999987644332 2233333221 2578999999999997532
Q ss_pred -hhhHHHHH------hcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 -IMQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 -~~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
........ ..++.++++||++|.|++++++.|.+.+...
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 134 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 12222222 2344789999999999999999999887643
No 200
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=159.98 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 88 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------------- 88 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------------
Confidence 458999999999999999999987632 23345555566556666666 47899999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++|+|+|+..+.+..+ ..+...+... ..+.|+++|+||+|+...
T Consensus 89 ----------------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 89 ----------------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp ----------------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ----------------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1234466789999999999986543332 1233334332 247899999999998653
Q ss_pred ch---hhHHHHHhc--CCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEFWSL--GFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~~~~--~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+... +..++++||++|.|++++++.|.+.+.
T Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 122333332 567899999999999999999987764
No 201
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.74 E-value=1.2e-17 Score=188.60 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=114.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCC-cceeeeEeEEEec-----------------CCCceEEEEEcCCCc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTG-----------------PEGQKFRLIDTAGIR 431 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~-gtT~d~~~~~~~~-----------------~~~~~~~liDTpG~~ 431 (666)
+.++|+++|++|+|||||+++|++... ....+ |+|.+.-...+.. .....++||||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 457999999999999999999997532 22222 3443311111110 011259999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcc--------
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN-------- 503 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~-------- 503 (666)
+|..+.. ++++.+|++|+|+|+++++..+....+..+...++|+|+|+||+|+.....
T Consensus 82 ~F~~~~~--------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 82 AFTTLRK--------------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCTTSBC--------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred HHHHHHH--------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 8865542 256789999999999999999999999999999999999999999964321
Q ss_pred -------hhhHHHHH---HHHHHHHhc--------------CCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 504 -------QQTATYYE---QDVREKLRA--------------LDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 504 -------~~~~~~~~---~~l~~~l~~--------------~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
....+.+. ..+...+.. ....|++++||++|.|+++|+++|......
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 01111111 122223322 123589999999999999999999876653
No 202
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=2.1e-17 Score=155.82 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||.......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------------- 68 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-------------- 68 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--------------
Confidence 5799999999999999999998763 334455666666666666665 46899999998653322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+....
T Consensus 69 ------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1g16_A 69 ------------------------TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 124 (170)
T ss_dssp ------------------------CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred ------------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc
Confidence 1245688999999999976433221 1233333332 2478999999999985422
Q ss_pred h--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+++++++||++|.|+.++++.|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 112222 2457789999999999999999999988764
No 203
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.74 E-value=1.2e-17 Score=169.01 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=116.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCC-CcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..+|+++|++|||||||+|+|++.........+ ++|..+..+...+++..+.||||||+.+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~------------ 88 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT------------ 88 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH------------
Confidence 458999999999999999999998865544333 6899999998999999999999999975321110
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc----CCCcEEEEeccCCCCc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----MDKFIILAVNKCESPR 317 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~----~~~p~ilv~NK~D~~~ 317 (666)
..+...+.+.+......+|++|+|+|+.. ++..+..+++++.+.+ .+.|+++|.||+|+..
T Consensus 89 --------------~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 89 --------------DPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp --------------STTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred --------------HHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 11112233333344588999999999974 8888888888877632 2679999999999865
Q ss_pred cchhh---------HHH-HHhcCCCCeeeccc-----CCCChHHHHHHHHHHhhhhc
Q 005979 318 KGIMQ---------VSE-FWSLGFSPLPISAI-----SGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 318 ~~~~~---------~~~-~~~~~~~~i~iSa~-----~g~Gi~eLl~~I~~~l~~~~ 359 (666)
..... ... ....|..++.+++. .+.|+.+|++.|.+++++..
T Consensus 154 ~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 154 GSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 43211 111 12345445444433 36899999999999888654
No 204
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=1.1e-17 Score=157.50 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=92.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.......+.++.+... ...+++ ..+.+|||||......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~-------------- 64 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRW-------------- 64 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchh--------------
Confidence 468999999999999999999988766666666766642 223444 5688999999865221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
.....+..+|++++|+|...+.+... ..+...+... ..+.|+++|+||+|+..
T Consensus 65 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 65 ------------------------LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp --------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred ------------------------hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 12245688999999999986432222 1222333321 24789999999999875
Q ss_pred cchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... .... ....+.+++++||++|.|++++++.|.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 3221 1122 23456788999999999999999999887753
No 205
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=1.7e-17 Score=159.34 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=106.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|||||||+++|++.......++.|.+ ...+.+++..+.+|||||....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~------------------ 73 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGQRKI------------------ 73 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE----EEEEEETTEEEEEEECSSCGGG------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE----EEEEEECCEEEEEEECCCCHHH------------------
Confidence 468999999999999999999988644444444432 3345667889999999998641
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..++..+|++++|+|+..+-+... ..+...+.. ...+.|+++|+||+|+....
T Consensus 74 --------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 74 --------------------RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp --------------------HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 1233466789999999999986533322 222333322 12578999999999987643
Q ss_pred hh-hHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 IM-QVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~~-~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. ....... .++.++++||++|.|+++++++|.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 21 2222211 23367999999999999999999887653
No 206
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=1.4e-17 Score=187.48 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=111.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccc--------------cCCCcceeeeEeEEEecC--CC--ceEEEEEcCCCcc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV--------------SPISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRK 432 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~--------------~~~~gtT~d~~~~~~~~~--~~--~~~~liDTpG~~~ 432 (666)
.++|+++|++|+|||||+++|++...... ....|+|.......+.+. ++ ..++||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 56899999999999999999986321111 112456655443343321 33 4788999999977
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHH
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~ 512 (666)
|.. .+.++++.+|++|+|+|++++.+.+....+..+...++|+|+|+||+|+..... +...+
T Consensus 86 F~~--------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~----~~v~~ 147 (600)
T 2ywe_A 86 FSY--------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV----DRVKK 147 (600)
T ss_dssp GHH--------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH----HHHHH
T ss_pred HHH--------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH----HHHHH
Confidence 532 345678999999999999999999999988888889999999999999975421 22233
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++.+.+. ....+++++||++|.|+++|++.|.+...
T Consensus 148 el~~~lg-~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 148 QIEEVLG-LDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHTSC-CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhC-CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3333321 11235999999999999999999876543
No 207
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=1.2e-17 Score=160.09 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.......+..+.+ ...+.+++..+.+|||||+.......
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 82 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSW-------------- 82 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCGG--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHHH--------------
Confidence 468999999999999999999998754445555543 23456678999999999986532211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|+..+.+... ..+...+... ..+.|+++|+||+|+....
T Consensus 83 ------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 138 (181)
T 2h17_A 83 ------------------------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 138 (181)
T ss_dssp ------------------------GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred ------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC
Confidence 134678999999999987644432 2233333321 2578999999999987532
Q ss_pred -hhhHHHHH------hcCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 -IMQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 -~~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
........ ..++.++++||++|.|++++++.|.+.
T Consensus 139 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 139 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 11222222 123468999999999999999998753
No 208
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=2.9e-17 Score=156.83 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+.+ ..+.+|||||......
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 76 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------------- 76 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG---------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh---------------
Confidence 58999999999999999999987632 22334444444444445554 5799999999764221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+....
T Consensus 77 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 77 -----------------------LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp -----------------------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred -----------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 12245788999999999976533222 2333334332 2478999999999986532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
. .....+ ...+++++++||++|.|+++|++.|.+.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 1 122223 24577899999999999999999999877643
No 209
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=3e-17 Score=154.17 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|+|||||+|+|++... ...+.+++.+.......+++ ..+.+|||||....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------------- 65 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------------- 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-----------------
Confidence 5899999999999999999998762 33444555444444455665 47899999997541
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++++|+|+....+... ..+...+.... .+.|+++|+||+|+...
T Consensus 66 ---------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 66 ---------------------AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp ---------------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred ---------------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 1233456788999999999986432222 12223333221 37899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+++++++||++|.|+.++++.|.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 21 122222 235678999999999999999999987764
No 210
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=2.6e-17 Score=154.88 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||.......
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------- 70 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI------------- 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-------------
Confidence 35899999999999999999998753 223344445555555556655 47899999997653222
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|+..+.+... ..+...+.....+.|+++|+||+|+....
T Consensus 71 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 71 -------------------------TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp -------------------------CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred -------------------------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc
Confidence 1245678999999999976432221 12333333322578999999999987532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .....+ ...+++++++||++|.|++++++.|.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 1 122222 235778999999999999999999987654
No 211
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=158.37 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=100.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.......+.++.+.. ...+.+++ ..+.+|||||..... ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~--~~----------- 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLD--KS----------- 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC---------C-----------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccc--hh-----------
Confidence 35899999999999999999999876555555555433 33445555 368899999986421 00
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|.....+... ..+...+... ..+.|+++|+||+|+..
T Consensus 69 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 69 -----------------------WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----------------------HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred -----------------------hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 111234577999999999876433222 1233334332 23789999999999975
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... ....+ ...+++++++||++|.|+++|++.|.+.+...
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3211 11122 23567899999999999999999999887643
No 212
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=7.5e-17 Score=155.21 Aligned_cols=166 Identities=25% Similarity=0.301 Sum_probs=108.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
++|+++|.+|||||||+|+|++.. ......+++|.+...... . .+.+|||||+..........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~------------ 64 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEV------------ 64 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHH------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHH------------
Confidence 579999999999999999999986 556777888877655433 2 79999999986432211100
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-----------CCHHHHHHHHHHHhhcCCCcEEEEecc
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-----------LTAADEEIADWLRKNYMDKFIILAVNK 312 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~-----------~~~~d~~i~~~l~~~~~~~p~ilv~NK 312 (666)
...+.......+......++++++|+|.... ....+..+...+.. .+.|+++|+||
T Consensus 65 -----------~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK 131 (190)
T 2cxx_A 65 -----------QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNK 131 (190)
T ss_dssp -----------HHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred -----------HHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeeh
Confidence 0111111111222225667899999997531 11222334444544 57999999999
Q ss_pred CCCCccchhhHHHH-HhcCCC-------CeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 313 CESPRKGIMQVSEF-WSLGFS-------PLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 313 ~D~~~~~~~~~~~~-~~~~~~-------~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
+|+..........+ ..++.+ ++++||++|.|++++++.|.+.+.+..
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 132 LDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99876532222222 233443 599999999999999999998876543
No 213
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.73 E-value=1.2e-18 Score=192.09 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=118.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
+.++|+++|++|+|||||+++|++.. ......+|+|.+.....+.. ++..+.||||||+.+|..+..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~----------- 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRA----------- 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBC-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHH-----------
Confidence 46899999999999999999999653 33455578887766555553 678999999999988865432
Q ss_pred HHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc-C-CCCCEE
Q 005979 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA-L-DWAPIV 527 (666)
Q Consensus 450 ~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~-~-~~~~ii 527 (666)
+++..+|++|+|+|++++...+....+..+...++|+|+|+||+|+...........+.+ . ..+.. . ..+|++
T Consensus 70 ---~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~-~-~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 70 ---RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ-Y-GILPEEWGGESQFV 144 (501)
T ss_dssp ---SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCC-C-CCCTTCCSSSCEEE
T ss_pred ---HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHH-h-hhhHHHhCCCccEE
Confidence 256789999999999999888888888888888999999999999965321111000000 0 00111 1 136899
Q ss_pred EEeCccCCCHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~ 546 (666)
++||++|.|+++|++.|..
T Consensus 145 ~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTT
T ss_pred EEeeeeccCcchhhhhhhh
Confidence 9999999999999998863
No 214
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=2.9e-17 Score=159.53 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--------------------------------
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-------------------------------- 210 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------------------------- 210 (666)
..+|+++|.+|||||||+|+|++... .....+.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46899999999999999999998863 222333343444444444444
Q ss_pred -------eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCC
Q 005979 211 -------HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (666)
Q Consensus 211 -------~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~ 283 (666)
..+.+|||||...... .+...+..+|++|+|+|+.
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------------------------------------~~~~~~~~~d~~i~v~D~~ 127 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------------------------------------IVPLYYRGATCAIVVFDIS 127 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------------------------------------THHHHHTTCSEEEEEEETT
T ss_pred ccCccceeEEEEEECCCcHHHHH--------------------------------------HHHHHhcCCCEEEEEEECC
Confidence 6799999999765321 1235678899999999998
Q ss_pred CCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc--hhhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 284 AGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG--IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 284 ~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.+.+..+ ..++..+... .+.|+++|+||+|..... ......+ ...+++++++||++|.|+.++++.|.+.+.+
T Consensus 128 ~~~s~~~~~~~~~~i~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 128 NSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh-CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 7543333 2233334332 358999999999942211 1222222 3457789999999999999999999877653
No 215
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=2.8e-17 Score=158.47 Aligned_cols=156 Identities=18% Similarity=0.184 Sum_probs=106.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCccccee-EEEEeecC-----------eeEEEEecCCcccccCCchh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGE-----------HEFMLVDTGGVLNVSKSQPN 230 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~i~liDTpG~~~~~~~~~~ 230 (666)
..+|+++|.+|||||||+|+|++... .....+..+.+.. .....+.+ ..+.+|||||+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------ 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence 35899999999999999999998753 2222233333332 22334443 47999999998541
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEE
Q 005979 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFII 307 (666)
Q Consensus 231 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~i 307 (666)
...+...+..+|++++|+|+..+.+... ..++..+.... .+.|++
T Consensus 84 --------------------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 84 --------------------------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131 (195)
T ss_dssp --------------------------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE
T ss_pred --------------------------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1234466789999999999986533332 23333333322 478999
Q ss_pred EEeccCCCCccch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 308 LAVNKCESPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 308 lv~NK~D~~~~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+|+||+|+..... .....+ ...+++++++||++|.|++++++.|.+.+.+
T Consensus 132 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999875321 122222 2457789999999999999999999887754
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=1.4e-17 Score=162.51 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.......++.+. ....+.+++..+.+|||||........
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------------- 86 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRVW-------------- 86 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCGG--------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHHH--------------
Confidence 35799999999999999999998764433333333 345667888999999999986533211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|+..+-+.. ...+...++. ...+.|+++|+||+|+....
T Consensus 87 ------------------------~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 142 (198)
T 1f6b_A 87 ------------------------KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142 (198)
T ss_dssp ------------------------GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred ------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC
Confidence 13457899999999998653322 2223333322 12578999999999987521
Q ss_pred -hhhHHHHHh------------------cCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 320 -IMQVSEFWS------------------LGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 -~~~~~~~~~------------------~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
......+.. .+..++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 112222222 123579999999999999999987643
No 217
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=2.9e-17 Score=159.43 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=106.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..++|+++|.+|||||||+|+|++.....+...+ |.......+...+..+.+|||||+.......
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 80 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW------------- 80 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------------
Confidence 3468999999999999999999998744432122 2224444556778899999999986532211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhc--------CCCcEEEEec
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNY--------MDKFIILAVN 311 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~--------~~~p~ilv~N 311 (666)
...+..+|++|+|+|+..+.+... ..+..++.... .+.|+++|+|
T Consensus 81 -------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~N 135 (199)
T 4bas_A 81 -------------------------ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135 (199)
T ss_dssp -------------------------GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEE
T ss_pred -------------------------HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEE
Confidence 134578999999999987644322 23333332210 2789999999
Q ss_pred cCCCCccchh-hHHHH-------HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 312 KCESPRKGIM-QVSEF-------WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 312 K~D~~~~~~~-~~~~~-------~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
|+|+...... ..... ...++.++++||++|.|++++++.|.+.+.+..
T Consensus 136 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 136 KMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 9999764211 11111 124557899999999999999999998876543
No 218
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-17 Score=155.16 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....+..+.+.......+++ ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------------- 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---------------- 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh----------------
Confidence 47999999999999999999987632 22334444444444445554 478999999976421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCcc-
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK- 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~- 318 (666)
......+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 67 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 67 ----------------------SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp ----------------------GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred ----------------------hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 1233567889999999999865332221 223333322 247899999999998653
Q ss_pred --ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 --GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 --~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+++++++||++|.|+.++++.|.+.+.
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 11 111222 235778999999999999999999987654
No 219
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=2.2e-17 Score=158.82 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=106.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.... ...+ |.......+.+++..+.+|||||+......
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------------- 78 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGEDVD--TISP--TLGFNIKTLEHRGFKLNIWDVGGQKSLRSY--------------- 78 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS--SCCC--CSSEEEEEEEETTEEEEEEEECCSHHHHTT---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--cccc--cCccceEEEEECCEEEEEEECCCCHhHHHH---------------
Confidence 468999999999999999999987622 2222 333445556678899999999998653221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|+..+.+... ..+...++. ...+.|+++|+||+|+....
T Consensus 79 -----------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 79 -----------------------WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp -----------------------GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -----------------------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 1234678999999999987644332 223333322 12478999999999987642
Q ss_pred h-hhHHHHH------hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ....+.. ..+++++++||++|.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 2 1222222 124468999999999999999999887764
No 220
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=2.8e-17 Score=155.10 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=99.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++...... ..+..+.+.....+.+++ ..+.+|||||.......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------- 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------------- 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------------
Confidence 35799999999999999999997653332 233445556566666666 46789999998653210
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~ 317 (666)
.....+..+|++++|+|....-+... ..++..+.... .+.|+++|+||+|+..
T Consensus 68 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 68 ------------------------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp --------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred ------------------------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 11134577999999999976422211 12222232221 2789999999999874
Q ss_pred cchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... .... ....+++++++||++|.|++++++.|.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 3221 1222 23457788999999999999999999887653
No 221
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.73 E-value=5.8e-17 Score=176.37 Aligned_cols=162 Identities=22% Similarity=0.216 Sum_probs=115.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc--ccccCCCcceeeeEeEEEecC--------------C--C------ceEEEE
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP--------------E--G------QKFRLI 425 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~--~~~~~~~gtT~d~~~~~~~~~--------------~--~------~~~~li 425 (666)
..++|+++|++|+|||||+++|+|... ......+|+|.+.....+... + + ..+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 347899999999999999999997532 223334677776543322210 0 1 579999
Q ss_pred EcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-CHHHHHHHHHHHHhC-CcEEEEEecccCCCCcc
Q 005979 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKN 503 (666)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-t~~d~~i~~~i~~~~-~pvIlv~NK~Dl~~~~~ 503 (666)
||||+.++ ...+...+..+|++|+|+|++++. ..+..+.+..+...+ +|+|+|+||+|+....
T Consensus 89 DtPGh~~f--------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~- 153 (410)
T 1kk1_A 89 DAPGHEAL--------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE- 153 (410)
T ss_dssp ECSSHHHH--------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-
T ss_pred ECCChHHH--------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH-
Confidence 99998543 234555678899999999999887 778877777666666 4799999999997632
Q ss_pred hhhHHHHHHHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 504 QQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 504 ~~~~~~~~~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
......+++.+.+.. ....|++++||++|.|+++|++.|.+..
T Consensus 154 --~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 154 --KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp --HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 112223345555543 2467999999999999999999887543
No 222
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.1e-18 Score=192.74 Aligned_cols=147 Identities=22% Similarity=0.268 Sum_probs=108.6
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccC------------------------------CCCcccceeEEEEeecC
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD------------------------------EPGVTRDRMYGRSFWGE 210 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 210 (666)
....+|+++|++|+|||||+|+|++....+... .+|+|.+.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345799999999999999999999775333221 26889998888888889
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-----
Q 005979 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG----- 285 (666)
Q Consensus 211 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~----- 285 (666)
..+.+|||||+..+ ...+..++..+|++|+|+|+..+
T Consensus 245 ~~~~iiDTPG~e~f--------------------------------------~~~~~~~~~~aD~~llVVDa~~g~~e~~ 286 (611)
T 3izq_1 245 ANFTIVDAPGHRDF--------------------------------------VPNAIMGISQADMAILCVDCSTNAFESG 286 (611)
T ss_dssp CEEEEEECCSSSCH--------------------------------------HHHHTTTSSCCSEEEEEEECSHHHHHTT
T ss_pred ceEEEEECCCCccc--------------------------------------HHHHHHHHhhcCceEEEEECCCCccccc
Confidence 99999999999641 23444667889999999999875
Q ss_pred --CCHHHHHHHHHHHhhcCC-CcEEEEeccCCCCccchh-------hHHH-HHhcC-----CCCeeecccCCCChHHH
Q 005979 286 --LTAADEEIADWLRKNYMD-KFIILAVNKCESPRKGIM-------QVSE-FWSLG-----FSPLPISAISGTGTGEL 347 (666)
Q Consensus 286 --~~~~d~~i~~~l~~~~~~-~p~ilv~NK~D~~~~~~~-------~~~~-~~~~~-----~~~i~iSa~~g~Gi~eL 347 (666)
+..+..+.+..+.. .+ +|+|+|+||+|+...... .... +...| .+++++||++|.|+.+|
T Consensus 287 ~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 287 FDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCTTSHHHHHHHHHHT--TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhhhHHHHHHHHHHH--cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 45566677766665 34 459999999999762111 1111 12233 36799999999999865
No 223
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=3.9e-17 Score=159.89 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=111.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||.........
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS----------- 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-----------
Confidence 35899999999999999999998763 334455666666656666666 4799999999865332221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++|||+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 76 ---------------------------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ---------------------------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 346789999999999865332221 223333332 246899999999999753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.. .....+ ...+++++++||++|.|++++++.|.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 21 122222 246778999999999999999999998876543
No 224
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=3.4e-17 Score=153.56 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=104.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....+++.+.......+++. .+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 65 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------------- 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----------------
Confidence 47999999999999999999987532 23334444444445556654 48999999975411
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+..+.+... ..+...+... ..+.|+++|+||+|+...
T Consensus 66 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 66 ----------------------SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp ----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred ----------------------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 223356788999999999986432221 1222222221 147899999999998653
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
... ....+ ...+++++++||++|.|+++|++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 221 12222 235778999999999999999999987764
No 225
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=158.48 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.+|||||.....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 76 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 76 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---------------
Confidence 4689999999999999999999876 2345555555555555666664 78999999975411
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|+....+... ..++..+.... .+.|+++|+||+|+..
T Consensus 77 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 77 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred -----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 223356788999999999976432222 12223333322 3789999999999875
Q ss_pred cch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .....+ ...+++++++||++|.|+++|++.|.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 322 122222 2356789999999999999999999887754
No 226
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=4.6e-17 Score=154.81 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.... ....+..+.+.......+++ ..+.+|||||.....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 78 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR--------------- 78 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---------------
Confidence 468999999999999999999987632 11222223333333344444 578999999975421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 79 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 79 -----------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp -----------------------HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2344667899999999999865332221 223333332 257899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...++.++++||++|.|+.++++.|.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 122222 346778999999999999999999987664
No 227
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=3.9e-17 Score=155.67 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=109.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.. ....+.+++.........+++ ..+.+|||||.......
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------- 73 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------------- 73 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-------------
Confidence 4689999999999999999999874 344555666555555566666 46889999998653221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~ 317 (666)
....+..+|++++|+|+....+... ..+...++. ...+.|+++|+||+|+..
T Consensus 74 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 74 -------------------------REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp -------------------------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred -------------------------HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1245678999999999976422221 112222222 124789999999999875
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.... ....+ ...++.++++||++|.|++++++.|.+.+.+..
T Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 3221 12222 345678999999999999999999998876543
No 228
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.72 E-value=2.2e-17 Score=193.69 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=114.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc---------------ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCcccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR---------------TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~ 434 (666)
..++|+++|++|+|||||+++|++... .......|+|.+.....+.. ++..+.||||||+.++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADY- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHH-
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHH-
Confidence 357999999999999999999986410 01123467888776555653 6789999999998553
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEEecccCCCCcchhhHHHHHHH
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
...+..+++.+|++|+|+|++++...+..+++..+...++| +|+|+||+|+... ....+...++
T Consensus 373 -------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d--~e~le~i~eE 437 (1289)
T 3avx_A 373 -------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD--EELLELVEME 437 (1289)
T ss_dssp -------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC--HHHHHHHHHH
T ss_pred -------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc--hhhHHHHHHH
Confidence 23455678899999999999999888898888888888999 7899999999752 1223334445
Q ss_pred HHHHHhcCC----CCCEEEEeCccC--------CCHHHHHHHHHHH
Q 005979 514 VREKLRALD----WAPIVYSTAIAG--------QSVDKIIVAAEMV 547 (666)
Q Consensus 514 l~~~l~~~~----~~~ii~vSAk~g--------~gv~~L~~~i~~~ 547 (666)
+.+.+...+ .+|++++||++| .|+.+|++.|.+.
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 555555443 479999999999 3577777776643
No 229
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.4e-17 Score=158.68 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=107.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc-cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..+|+++|.+|||||||+|+|++.... ...+..+.+..............+.+|||||......
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 87 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS--------------- 87 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh---------------
Confidence 358999999999999999999987632 3444555554443333223446899999999764221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+....
T Consensus 88 -----------------------~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 88 -----------------------LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp -----------------------GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred -----------------------hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 12245688999999999986533222 2233333332 2378999999999986532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+++++++||++|.|+++|++.|.+.+.+
T Consensus 145 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 1 122223 2456788999999999999999999987764
No 230
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=5.7e-17 Score=155.75 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee--EEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.. ....+++++.+.......+++.. +.+|||||.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------------- 68 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------------- 68 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT--------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH--------------
Confidence 579999999999999999999875 34555666666666666676654 678999997653221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh--hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~--~~~~~p~ilv~NK~D~~~~ 318 (666)
....+..+|++++|+|+..+.+... ..+...+.. ...+.|+++|+||+|+...
T Consensus 69 ------------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 69 ------------------------RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp ------------------------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred ------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 2245678999999999986432222 122222322 1247899999999998753
Q ss_pred ch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ...+++++++||++|.|++++++.|.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 21 112222 34577899999999999999999999887643
No 231
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=3.8e-17 Score=158.44 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=108.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.........+++. .+.+|||||.........
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 89 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP----------- 89 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-----------
Confidence 35899999999999999999998762 333444444444444555554 469999999765432221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+..+.+... ..+...++....+.|+++|+||+|+...
T Consensus 90 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 90 ---------------------------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred ---------------------------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 34578999999999987543333 2345555555567899999999998642
Q ss_pred c-----hhhHHHH-HhcCCC-CeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 G-----IMQVSEF-WSLGFS-PLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~-----~~~~~~~-~~~~~~-~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ......+ ...++. ++++||++|.|+.++++.|.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 1 1122222 235666 8999999999999999999887754
No 232
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=1.7e-17 Score=191.37 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=119.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcc--------------eeeeEe------------------------
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGT--------------TRDAID------------------------ 411 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gt--------------T~d~~~------------------------ 411 (666)
..++|+|+|.+|+|||||+|+|+|.....++..|+| |++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 357999999999999999999999988888888877 443210
Q ss_pred ---------------EEEecCC---CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCH
Q 005979 412 ---------------TEFTGPE---GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (666)
Q Consensus 412 ---------------~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~ 473 (666)
..+..+. ...+.||||||+.+... ....+..+++.||++|+|+|++++.+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----------~~~~~~~~i~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----------RNELSLGYVNNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----------CHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----------HHHHHHHHHHhCCEEEEEEeCCCccch
Confidence 0000000 04699999999865211 134567789999999999999999998
Q ss_pred HHHHHHH-HHHHhCCcEEEEEecccCCCCc---ch--hhHH----HHHHHHHHHHhcC--------CCCCEEEEeCc---
Q 005979 474 QDCRIAE-RIEQEGKGCLIVVNKWDTIPNK---NQ--QTAT----YYEQDVREKLRAL--------DWAPIVYSTAI--- 532 (666)
Q Consensus 474 ~d~~i~~-~i~~~~~pvIlv~NK~Dl~~~~---~~--~~~~----~~~~~l~~~l~~~--------~~~~ii~vSAk--- 532 (666)
.+...+. .+...++|+++|+||+|+.... .. ...+ .+...+...+... ...++++|||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al 296 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQAL 296 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHH
Confidence 8887664 5555689999999999986432 00 0111 1222222333322 23579999999
Q ss_pred -----------cCCCHHHHHHHHHHHHHh
Q 005979 533 -----------AGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 533 -----------~g~gv~~L~~~i~~~~~~ 550 (666)
+|.|+++|+..+.+.+..
T Consensus 297 ~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 297 RRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999876543
No 233
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.72 E-value=4.3e-17 Score=178.63 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCccccc------------------------------CCCCcccceeEEEEeecC
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGE 210 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 210 (666)
....+|+++|++|+|||||+|+|++....+.. ..+|+|.+.....+.+.+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 34568999999999999999999765322221 226789998888888889
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC---
Q 005979 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--- 287 (666)
Q Consensus 211 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~--- 287 (666)
..+.+|||||+.++ .+.+..++..+|++|+|+|+..+..
T Consensus 95 ~~~~iiDTPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~ 136 (439)
T 3j2k_7 95 KHFTILDAPGHKSF--------------------------------------VPNMIGGASQADLAVLVISARKGEFETG 136 (439)
T ss_pred eEEEEEECCChHHH--------------------------------------HHHHHhhHhhCCEEEEEEECCCCccccc
Confidence 99999999998642 2445567889999999999998865
Q ss_pred ----HHHHHHHHHHHhhcCCCc-EEEEeccCCCCccch-----h----hHHHHH-hcC------CCCeeecccCCCChHH
Q 005979 288 ----AADEEIADWLRKNYMDKF-IILAVNKCESPRKGI-----M----QVSEFW-SLG------FSPLPISAISGTGTGE 346 (666)
Q Consensus 288 ----~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~~-----~----~~~~~~-~~~------~~~i~iSa~~g~Gi~e 346 (666)
.++.+.+..+.. .+.| +++|+||+|+..... . +...+. .+| ++++++||++|.|+.+
T Consensus 137 ~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 137 FEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred cCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence 577777777666 4677 999999999853210 0 111121 233 3589999999999999
Q ss_pred HHH
Q 005979 347 LLD 349 (666)
Q Consensus 347 Ll~ 349 (666)
+.+
T Consensus 215 l~~ 217 (439)
T 3j2k_7 215 QSD 217 (439)
T ss_pred ccc
Confidence 654
No 234
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=4.3e-17 Score=157.43 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.... ....+ |.......+.+.+..+.+|||||.....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------------- 81 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFR----------------- 81 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHH-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeCCEEEEEEECCCCHhHH-----------------
Confidence 358999999999999999999987632 11122 3333344556778899999999986421
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
......+..+|++++|+|+...-+... ..+...+.. ...+.|+++|+||+|+....
T Consensus 82 ---------------------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (188)
T 1zd9_A 82 ---------------------SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140 (188)
T ss_dssp ---------------------TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred ---------------------HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC
Confidence 123355788999999999976533222 223333332 12578999999999987542
Q ss_pred h-hhHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ........ .++.++++||++|.|+++|++.|.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 12222211 23357999999999999999999887653
No 235
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=159.16 Aligned_cols=156 Identities=14% Similarity=0.081 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.+|||||.........
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 86 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP----------- 86 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-----------
Confidence 4689999999999999999999875 3345556666555555666664 577999999975433221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+..+.+..+. .++..+.....+.|+++|+||+|+...
T Consensus 87 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 87 ---------------------------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 345789999999999865433332 244445554458999999999998652
Q ss_pred c---------------hhhHHHHH-hcCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 G---------------IMQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~---------------~~~~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
. ......+. ..+. .++++||++|.|++++++.|.+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 1 11122222 3465 789999999999999999998877543
No 236
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=1.5e-17 Score=158.42 Aligned_cols=157 Identities=16% Similarity=0.097 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC---eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+.+ ..+.+|||||......
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------- 71 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK------------- 71 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------------
Confidence 358999999999999999999987532 22223444555556666665 6899999999764221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh---cCCCc-EEEEeccCC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKF-IILAVNKCE 314 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~---~~~~p-~ilv~NK~D 314 (666)
.....+..+|++++|+|+..+.+.... .++..+... ..+.| +++|+||+|
T Consensus 72 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 72 -------------------------MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp -------------------------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred -------------------------hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 122457889999999999864332221 223333321 12456 899999999
Q ss_pred CCccch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 315 SPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 315 ~~~~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+..... .....+ ...+++++++||++|.|++++++.|.+.+.+.
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 865321 122222 24577889999999999999999999877643
No 237
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=6.8e-17 Score=154.80 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=108.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||.....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---------------
Confidence 46899999999999999999998762 34455555555555556666 478999999975411
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|+....+... ..++..+.... .+.|+++|+||+|+..
T Consensus 81 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 81 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 233456788999999999975432221 12222232221 3789999999999865
Q ss_pred cch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .....+ ...+++++++||++|.|++++++.|.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 321 122222 3457788999999999999999999887754
No 238
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=3.6e-17 Score=158.49 Aligned_cols=150 Identities=18% Similarity=0.186 Sum_probs=103.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.......+ |.......+.+++..+.+|||||+.......
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 84 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQP----TWHPTSEELAIGNIKFTTFDLGGHIQARRLW-------------- 84 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCC----CCSCEEEEEEETTEEEEEEECCCSGGGTTSG--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcccc----CCCCCeEEEEECCEEEEEEECCCCHHHHHHH--------------
Confidence 3589999999999999999999876443322 3333456677888999999999997633221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|+..+-+... ..+...++. ...+.|+++|+||+|+....
T Consensus 85 ------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (190)
T 1m2o_B 85 ------------------------KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140 (190)
T ss_dssp ------------------------GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred ------------------------HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC
Confidence 133568999999999987643322 222233321 12578999999999987532
Q ss_pred -hhhHHHHHh-------------cCCCCeeecccCCCChHHHHHHHHHH
Q 005979 320 -IMQVSEFWS-------------LGFSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 320 -~~~~~~~~~-------------~~~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
..+..+... .+.+++++||++|.|++++++.|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 112222222 12358999999999999999998754
No 239
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=2.5e-17 Score=185.45 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeE------EE
Q 005979 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDT------EF 414 (666)
Q Consensus 341 g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~------~~ 414 (666)
..|+..++..+.+......... .......+||+++|.+|||||||+|+|++... .....+++..+.... .+
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~--~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~v 89 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGE--ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAPNIKGL 89 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTC--CCBCCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGG
T ss_pred HhCHHHHHHHHHHHHHhhccCc--ccccccceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEeccccccce
Confidence 3567676665544332110000 00123357999999999999999999997652 222222222222211 11
Q ss_pred ecC---CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhC--CcE
Q 005979 415 TGP---EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG--KGC 489 (666)
Q Consensus 415 ~~~---~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~--~pv 489 (666)
... .+..+.+|||||+..+..+. ..+++.+|++|+|+|+++. .....|+..+...+ +|+
T Consensus 90 ~~~~~~~~~~~~i~Dt~G~e~~~~~~--------------~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pv 153 (535)
T 3dpu_A 90 ENDDELKECLFHFWDFGGQEIMHASH--------------QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPV 153 (535)
T ss_dssp TTCSTTTTCEEEEECCCSCCTTTTTC--------------HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCE
T ss_pred eecCCCceEEEEEEECCcHHHHHHHH--------------HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCE
Confidence 111 25689999999987654332 1357889999999999875 44556888888765 999
Q ss_pred EEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 490 LIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 490 Ilv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
|+|+||+|+........ +.+.+.+.. .+.++++|||++|.|+++|+..|.+.+.+.
T Consensus 154 ilV~NK~Dl~~~~~v~~-----~~~~~~~~~-~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 154 IVVMNKIDENPSYNIEQ-----KKINERFPA-IENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp EEEECCTTTCTTCCCCH-----HHHHHHCGG-GTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred EEEEECCCcccccccCH-----HHHHHHHHh-cCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 99999999976543321 223333333 347899999999999999999999887654
No 240
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=170.00 Aligned_cols=168 Identities=16% Similarity=0.082 Sum_probs=101.1
Q ss_pred cCCceEEEecCC---------CCChhHHHHHHhcc--CcccccCCCcc-eeeeEeEEEe--------------c-CCCce
Q 005979 369 NRIPAIAIVGRP---------NVGKSSILNALVGE--DRTIVSPISGT-TRDAIDTEFT--------------G-PEGQK 421 (666)
Q Consensus 369 ~~~~kI~vvG~~---------nvGKSSLin~ll~~--~~~~~~~~~gt-T~d~~~~~~~--------------~-~~~~~ 421 (666)
...+||+++|.+ |||||||+|+|++. ..+.....+++ +.+.....+. . .....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 345899999999 99999999999974 23333444433 3333222111 0 12347
Q ss_pred EEEEE------cCCCccccccccCCchhhHHHHH--------HHHHHH---------------------hhCCeEEEEee
Q 005979 422 FRLID------TAGIRKRAAIASSGSTTEALSVN--------RAFRAI---------------------RRSDVVALVIE 466 (666)
Q Consensus 422 ~~liD------TpG~~~~~~~~~~~~~~e~~~~~--------~~~~~i---------------------~~advvllViD 466 (666)
+.||| |||......... ..+... ....++ ++||++|+|+|
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~-----~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTAL-----QPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGC-----CCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred EEEEEcccccccccccccccccc-----ccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 88888 555543332110 000000 000011 26999999999
Q ss_pred cccc--CCHHHHH-HHHHHHH----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHH
Q 005979 467 AMAC--ITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 467 a~~~--~t~~d~~-i~~~i~~----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~ 539 (666)
+++. .+.+... |+..+.. .++|+|+|+||+|+...+.. +...+......+++++++||++|.|+++
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-------~~~~~~~~~~~~~~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-------RDAHTFALSKKNLQVVETSARSNVNVDL 244 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-------HHHHHHHHTSSSCCEEECBTTTTBSHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-------HHHHHHHHhcCCCeEEEEECCCCCCHHH
Confidence 9987 6665543 5555543 47999999999999543211 1222222233467999999999999999
Q ss_pred HHHHHHHHH
Q 005979 540 IIVAAEMVD 548 (666)
Q Consensus 540 L~~~i~~~~ 548 (666)
+|..|.+..
T Consensus 245 lf~~l~~~l 253 (255)
T 3c5h_A 245 AFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997654
No 241
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.72 E-value=7.8e-17 Score=154.36 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee--EEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.. ....+.+++.........+++.. +.+|||||.......
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------- 82 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM------------- 82 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-------------
Confidence 4589999999999999999999874 23334444444445555666654 566999998653221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh--hcCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~--~~~~~p~ilv~NK~D~~~ 317 (666)
....+..+|++++|+|+..+.+... ..+...+.. ...+.|+++|+||+|+..
T Consensus 83 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 83 -------------------------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp -------------------------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred -------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 1245678999999999986422211 122222221 125789999999999865
Q ss_pred cchh---hHHHH-HhcCCCCeeeccc-CCCChHHHHHHHHHHhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAI-SGTGTGELLDLVCSELK 356 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~-~g~Gi~eLl~~I~~~l~ 356 (666)
.... ....+ ...+.+++++||+ +|.|++++++.|.+.+.
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 3211 12222 2356789999999 99999999999988765
No 242
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=4.7e-17 Score=157.09 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=105.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+.+ ..+.+|||||........
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT------------ 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH------------
Confidence 468999999999999999999987632 22223333333333344443 578999999986533221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
...+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 89 --------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 89 --------------------------TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp --------------------------GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 134678999999999976432221 2233334332 247899999999998753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...++.++++||++|.|+++|++.|.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 21 122222 2457789999999999999999999887764
No 243
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=158.59 Aligned_cols=157 Identities=16% Similarity=0.094 Sum_probs=106.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 91 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---------------- 91 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------------
Confidence 46899999999999999999998763 222233444555555566666 57999999998541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++|+|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 92 ----------------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 92 ----------------------RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp ----------------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred ----------------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 1234466789999999999875432221 1233333332 257899999999999753
Q ss_pred ch---hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ...++ .++++||++|.|++++++.|.+.+.+.
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 21 122222 34677 789999999999999999999887643
No 244
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=4.5e-17 Score=155.94 Aligned_cols=153 Identities=21% Similarity=0.246 Sum_probs=103.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.......
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 79 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYW-------------- 79 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTG--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHH--------------
Confidence 4689999999999999999999876433333333 3344556778999999999997533221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|+..+.+.... ..+..+... ..+.|+++|+||+|+....
T Consensus 80 ------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (183)
T 1moz_A 80 ------------------------RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 135 (183)
T ss_dssp ------------------------GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC
T ss_pred ------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC
Confidence 1345789999999999876443321 222222221 2578999999999987542
Q ss_pred h-hhHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ........ .+++++++||++|.|++++++.|.+.+.+
T Consensus 136 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 1 12222221 12357999999999999999999887764
No 245
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=3.8e-17 Score=156.87 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 72 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF---------------- 72 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 36899999999999999999998763 333445555555555666666 57899999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
...+...+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 73 ----------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 73 ----------------------RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp ----------------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ----------------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1233455788999999999986433221 1222223322 257899999999998643
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...+++++++||++|.|+.++++.|.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 21 122222 3457789999999999999999999887764
No 246
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=2.2e-17 Score=162.48 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=109.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++... ...+.+++.+.....+.+++ ..+.+|||||+..+.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 75 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP----------- 75 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-----------
Confidence 35899999999999999999998753 33444444444444455555 4799999999975432211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++|+|+|...+.+.... .++..++....+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 76 ---------------------------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred ---------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 346789999999999764333221 344555544458999999999998653
Q ss_pred ch-----------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI-----------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~-----------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ..++. .++++||++|.|++++++.|.+.+...
T Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 21 112222 23565 789999999999999999999887654
No 247
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=6.3e-17 Score=156.56 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=106.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||........
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 87 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT------------ 87 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH------------
Confidence 358999999999999999999987632 22334445555555556665 478999999986533221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
...+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 88 --------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 88 --------------------------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 245678999999999976432222 1233333332 247899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...++.++++||++|.|++++++.|.+.+.+
T Consensus 142 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 122222 2457789999999999999999999887754
No 248
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=2.2e-17 Score=155.90 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=103.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... .....+.++.+.......+++ ..+.+|||||.......
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 71 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------------- 71 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--------------
Confidence 5899999999999999999998762 233345555555555556655 46889999997642211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
....+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+....
T Consensus 72 ------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 127 (170)
T 1z08_A 72 ------------------------GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127 (170)
T ss_dssp -------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred ------------------------HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 11335789999999998764332221 222223321 1468999999999987532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. .....+ ...+.+++++||++|.|++++++.|.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 1 122222 345778899999999999999999987764
No 249
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=5.5e-17 Score=152.45 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=102.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... ...+.+++.........+++ ..+.+|||||.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 65 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT---------------- 65 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 4799999999999999999998652 22333333333333344443 468999999986422
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+....+... ..+...+... ..+.|+++|+||+|+...
T Consensus 66 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 66 ----------------------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp ----------------------THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred ----------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 112355678999999999876422221 1222323221 247899999999999754
Q ss_pred ch---hhHHHHH-hc-CCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---MQVSEFW-SL-GFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---~~~~~~~-~~-~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+. .. +.+++++||++|.|+++|++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 22 1222232 23 567899999999999999999987663
No 250
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=7.3e-17 Score=175.40 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=105.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc--ccccCCCcceeeeEeEEEecC--------------C--C------ceEEEE
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP--------------E--G------QKFRLI 425 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~--~~~~~~~gtT~d~~~~~~~~~--------------~--~------~~~~li 425 (666)
..++|+++|++++|||||+++|++... ......+|+|.+......... + + ..+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 357999999999999999999997542 223334677775433221110 1 1 579999
Q ss_pred EcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC-CHHHHHHHHHHHHhCC-cEEEEEecccCCCCcc
Q 005979 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEGK-GCLIVVNKWDTIPNKN 503 (666)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~-t~~d~~i~~~i~~~~~-pvIlv~NK~Dl~~~~~ 503 (666)
||||+.++ ...+...+..+|++|+|+|++++. ..+..+.+..+...+. |+|+|+||+|+.+...
T Consensus 87 DtPGh~~f--------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 87 DSPGHETL--------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp ECSSHHHH--------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred ECCCHHHH--------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 99998543 223444566789999999999887 7787777776666664 7999999999976432
Q ss_pred hhhHHHHHHHHHHHHhc--CCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 504 QQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 504 ~~~~~~~~~~l~~~l~~--~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
... ..+++.+.+.. ....+++++||++|.|+++|++.|.+..
T Consensus 153 ~~~---~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 153 AEE---NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTT---HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHH---HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 111 12234444443 2467999999999999999999987543
No 251
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=1e-17 Score=160.48 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||........
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------------ 74 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH------------
Confidence 3589999999999999999999765 2223344555556555666766 679999999986532211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
...+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 75 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 75 --------------------------TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp --------------------------CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 134578999999999986433222 1233333332 246899999999998753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ...+++++++||++|.|++++++.|.+.+...
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 21 122222 24577899999999999999999998877643
No 252
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=3.5e-17 Score=157.91 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++...... .| |.......+.+.+..+.+|||||+........
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------------- 84 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWR------------- 84 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHH-------------
Confidence 46899999999999999999987764322 22 33344555677789999999999875433221
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
..+..+|++++|+|+.++-+... ..+...+... ..+.|+++|+||+|+....
T Consensus 85 -------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 85 -------------------------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp -------------------------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred -------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 23568999999999987644332 2333333321 2478999999999997642
Q ss_pred h-hhHHHHH------hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ....... ..+++++++||++|.|++++++.|.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 140 SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 1 1121111 123468999999999999999999988764
No 253
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=6.1e-17 Score=156.90 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=108.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||.........
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------- 84 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP----------- 84 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-----------
Confidence 35899999999999999999998752 34445555554444556666 5789999999875332211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+...
T Consensus 85 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 85 ---------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred ---------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 345789999999999765332222 344555554458999999999998753
Q ss_pred c---------------hhhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 G---------------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~---------------~~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
. ..+...+ ...++ .++++||++|.|++++++.|.+.+-
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 1 1111222 23466 7899999999999999999987653
No 254
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=7e-17 Score=156.68 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
...+|+++|.+|||||||+|+|++..... ..| |.......+.+.+..+.+|||||......
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 88 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRP--------------- 88 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----CT---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhHHH---------------
Confidence 34689999999999999999999876432 222 44455556677889999999999865321
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..+|++++|+|+..+.+... ..+...+.. ...+.|+++|+||+|+...
T Consensus 89 -----------------------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 89 -----------------------LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -----------------------THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -----------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 12245689999999999986533222 222333321 1247899999999998764
Q ss_pred ch-hhHHHHHh------cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~-~~~~~~~~------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. ........ .+++++++||++|.|++++++.|.+.+.
T Consensus 146 ~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 146 MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 21 11211111 2335799999999999999999987764
No 255
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=7.1e-17 Score=153.51 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=105.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++... .....+..+.+.....+.+++ ..+.+|||||.....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh---------------
Confidence 35899999999999999999998763 233344555555555566666 479999999975411
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc-----CCCcEEEEeccCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-----MDKFIILAVNKCE 314 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~-----~~~p~ilv~NK~D 314 (666)
......+..+|++++|+|+..+.+... ..+...+.... .+.|+++|+||+|
T Consensus 71 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 71 -----------------------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp -----------------------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred -----------------------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 222345678999999999986533222 12223332211 4689999999999
Q ss_pred CCccc--hhhHHHHH--hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 315 SPRKG--IMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 315 ~~~~~--~~~~~~~~--~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+.... ......+. ..+.+++++||++|.|++++++.|.+.+.+
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 86422 12223333 345689999999999999999999887653
No 256
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=7.8e-17 Score=157.29 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 70 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY---------------- 70 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhh----------------
Confidence 3589999999999999999999876322 2223333333333344443 57899999998641
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++|+|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 71 ----------------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 71 ----------------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp ----------------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred ----------------------cchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 1233456788999999999976432221 1233333332 147899999999998753
Q ss_pred chh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... ....+ ...+++++++||++|.|+.++++.|.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 211 12222 2357789999999999999999999887654
No 257
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=159.12 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=103.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||.......
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------- 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV------------- 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH-------------
Confidence 35899999999999999999998763 233345555555555566666 67999999998653222
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~~~~p~ilv~NK~D~~~~ 318 (666)
+...+..+|++|+|+|+..+.+... ..++..+.. ...+.|+++|+||+|+...
T Consensus 91 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 91 -------------------------TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp -------------------------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred -------------------------HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 1245688999999999986432222 122222322 2247899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...++.++++||++|.|+.++++.|.+.+..
T Consensus 146 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22 122222 3457789999999999999999999887754
No 258
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=5.1e-17 Score=159.11 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 88 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF---------------- 88 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 36899999999999999999998763 334445555666666666766 47899999997541
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.......+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 89 ----------------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 89 ----------------------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp ----------------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ----------------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1223355688999999999876432221 1233333332 246899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...++.++++||++|.|+.++++.|.+.+..
T Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 122222 2456789999999999999999999887764
No 259
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.71 E-value=3.7e-18 Score=174.05 Aligned_cols=143 Identities=24% Similarity=0.310 Sum_probs=101.8
Q ss_pred HHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh-HHHHH-hcCCCCeeecccCC
Q 005979 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAISG 341 (666)
Q Consensus 264 ~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-~~~~~-~~~~~~i~iSa~~g 341 (666)
+++...+.++|+|++|+|++.+.......+. ++ ++|.++|+||+|+.+..... ...++ ..|+++ ++||.+|
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 5677889999999999999987665432222 22 78999999999998753322 22333 457777 9999999
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCce
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~ 421 (666)
.|+.+|++.+...+ .+++++|.||||||||+|+|++.....+++.+|+|+.... +. -+..
T Consensus 86 ~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~--~~~~ 145 (262)
T 3cnl_A 86 PRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FS--LENG 145 (262)
T ss_dssp CHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EE--CTTS
T ss_pred cCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EE--eCCC
Confidence 99999887763221 5899999999999999999999887788999999987643 22 2357
Q ss_pred EEEEEcCCCccc
Q 005979 422 FRLIDTAGIRKR 433 (666)
Q Consensus 422 ~~liDTpG~~~~ 433 (666)
+.||||||+...
T Consensus 146 ~~l~DtpG~~~~ 157 (262)
T 3cnl_A 146 VKILDTPGILYK 157 (262)
T ss_dssp CEEESSCEECCC
T ss_pred EEEEECCCcccC
Confidence 899999999764
No 260
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=1.6e-17 Score=164.74 Aligned_cols=158 Identities=17% Similarity=0.121 Sum_probs=112.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHh-cCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV-GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..+|+++|.+|||||||+|+++ +.......+..|+|...........+..+.+|||||........
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 81 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR------------- 81 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH-------------
Confidence 4689999999999999999954 43334456777777776665554455789999999986543322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccch
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~ 320 (666)
...+..+|++++|+|+..+.+... ..+...+.....+.|+++|+||+|+.....
T Consensus 82 -------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 136 (221)
T 3gj0_A 82 -------------------------DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 136 (221)
T ss_dssp -------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS
T ss_pred -------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc
Confidence 145678999999999986533222 133344444445889999999999875432
Q ss_pred hh-H-HHHHhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 321 MQ-V-SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 321 ~~-~-~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. . ......++.++++||++|.|+.++++.|.+.+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 137 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 11 1 11223467899999999999999999999887643
No 261
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=1.9e-18 Score=192.05 Aligned_cols=184 Identities=20% Similarity=0.259 Sum_probs=133.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.|+|+++|++|+|||||+|+|++... .....+++|.+.....+.+ .+..+.+|||||+..+.....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~------------ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA------------ 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH------------
Confidence 57899999999999999999998763 3456789999988777766 567899999999876543322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
+.+..+|++|+|+|+..+..+++.+.+..+.. .+.|+++|+||+|+......
T Consensus 71 --------------------------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 71 --------------------------RGTQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPE 122 (537)
T ss_dssp --------------------------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCC
T ss_pred --------------------------HHHccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchH
Confidence 33567999999999999999999998888877 58899999999998643211
Q ss_pred ---hHHHHHh-----c--CCCCeeecccCCCChHHHHHHHHHHhhhhcCCcch------------hhhhcCCceEEEecC
Q 005979 322 ---QVSEFWS-----L--GFSPLPISAISGTGTGELLDLVCSELKKVEGTEDL------------VEEENRIPAIAIVGR 379 (666)
Q Consensus 322 ---~~~~~~~-----~--~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~------------~~~~~~~~kI~vvG~ 379 (666)
.....+. + .++++++||++|.|+++|++.|...++........ ..........+.++.
T Consensus 123 ~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~ 202 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQR 202 (537)
T ss_dssp SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEE
T ss_pred HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEec
Confidence 1111111 1 23678999999999999999998876532211000 011122345667777
Q ss_pred CCCChhHH
Q 005979 380 PNVGKSSI 387 (666)
Q Consensus 380 ~nvGKSSL 387 (666)
.+.+|...
T Consensus 203 G~l~~Gd~ 210 (537)
T 3izy_P 203 GTLRKGSI 210 (537)
T ss_dssp ECCSSEEE
T ss_pred CEEEcCCE
Confidence 77777654
No 262
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=4.9e-17 Score=155.79 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=107.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++|++... ...+.+++.+.......+++. .+.+|||||+........
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP------------ 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH------------
Confidence 5799999999999999999997652 233444444444444555554 567999999975432211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
..+..+|++++|+|+..+.+..+. .+...+.....+.|+++|+||+|+....
T Consensus 72 --------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 72 --------------------------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp --------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred --------------------------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 345789999999999865433332 3455555544589999999999986531
Q ss_pred h---------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...+. +++++||++|.|+++|++.|.+.+..
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 1 111112 23465 78999999999999999999887754
No 263
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=3.5e-17 Score=160.39 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee--EEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++.. ....+.+++.+.......+++.. +.+|||||+........
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 96 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP----------- 96 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-----------
Confidence 4689999999999999999999764 33455566666655556666654 55999999965432221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 97 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 97 ---------------------------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred ---------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 345789999999999875444332 355556554458999999999998653
Q ss_pred ch---------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
.. .....+ ...+. +++++||++|.|++++++.|.+.
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 21 011111 23454 48999999999999999998764
No 264
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=7.6e-17 Score=157.65 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||.........
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV----------- 75 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-----------
Confidence 45899999999999999999998763 233345555566555566655 5789999999865433221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc-----CCCcEEEEeccCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCE 314 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~-----~~~p~ilv~NK~D 314 (666)
..+..+|++|+|+|+..+.+.... .+...+.... .+.|+++|+||+|
T Consensus 76 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (207)
T 1vg8_A 76 ---------------------------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128 (207)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred ---------------------------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCC
Confidence 345789999999999765332221 2222222211 3689999999999
Q ss_pred CCccch--hhHHHHH--hcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 315 SPRKGI--MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 315 ~~~~~~--~~~~~~~--~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+..... .....+. ..+++++++||++|.|++++++.|.+.+.+.
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp SSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 874321 1222233 3456899999999999999999998877643
No 265
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=157.43 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=109.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||......
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------------- 87 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG------------- 87 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH-------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh-------------
Confidence 4568999999999999999999875422 234566677766666677764 578899999864110
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESP 316 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~ 316 (666)
......+..+|++|+|+|.....+... ..++..+.... .+.|+++|+||+|+.
T Consensus 88 ------------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 88 ------------------------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred ------------------------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 012245678999999999975422211 12223333321 378999999999987
Q ss_pred ccch---hhHHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 317 RKGI---MQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 317 ~~~~---~~~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... .....+. ..++.++++||++|.|++++++.|.+.+...
T Consensus 144 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 5321 1222222 3567889999999999999999999887643
No 266
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=7.5e-17 Score=155.66 Aligned_cols=156 Identities=18% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||......
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 84 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK-------------- 84 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh--------------
Confidence 468999999999999999999987632 23344455555555566666 5799999999754210
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++|+|+|+....+... ..+...+... ..+.|+++|+||+|+..
T Consensus 85 -----------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 85 -----------------------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp -----------------------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred -----------------------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 112355788999999999976432221 1223333332 25789999999999865
Q ss_pred cch---hhHHHH-HhcCCCCeeecccCC---CChHHHHHHHHHHhh
Q 005979 318 KGI---MQVSEF-WSLGFSPLPISAISG---TGTGELLDLVCSELK 356 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~i~iSa~~g---~Gi~eLl~~I~~~l~ 356 (666)
... .....+ ...++.++++||++| .|+.++++.|.+.+.
T Consensus 142 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 321 122222 246778999999999 999999999876654
No 267
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=5.2e-17 Score=179.84 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc------ccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 236 (666)
.++|+++|++|+|||||+|+|++... ......+|+|.+..+..+.+++..+.+|||||+.+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~------------- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD------------- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------------
Confidence 36899999999999999999998751 23345668898888877888899999999999854
Q ss_pred hhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCC
Q 005979 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
+...+...+..+|++|+|+|+..+..+++.+.+..++. .+.|+++|+||+|+.
T Consensus 86 -------------------------~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 86 -------------------------LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNA 138 (482)
T ss_dssp -------------------------HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSS
T ss_pred -------------------------HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 12445567889999999999999999999888888776 578899999999997
Q ss_pred ccchhh-----HHHHH-hc----CCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 317 RKGIMQ-----VSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 317 ~~~~~~-----~~~~~-~~----~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
...... ...+. .. +.+++++||.+|.|+.+|++.|.+.++.
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 632111 11222 22 3478999999999999999999987763
No 268
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=4.8e-17 Score=155.17 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec---CeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..+|+++|.+|||||||+|+|++... .....+..+.+.....+.++ ...+.+|||||......
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 73 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS------------- 73 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcC-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------------
Confidence 46899999999999999999998763 22333445555555555555 25789999999754221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-----cCCCcEEEEeccC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-----YMDKFIILAVNKC 313 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-----~~~~p~ilv~NK~ 313 (666)
.....+..+|++++|+|+..+.+... ..+...+... ..+.|+++|+||+
T Consensus 74 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 74 -------------------------LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp ----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred -------------------------hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 12234578999999999976533222 1222222221 1478999999999
Q ss_pred CCCccc----hhhHHHHHh--cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 314 ESPRKG----IMQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 314 D~~~~~----~~~~~~~~~--~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
|+.... ......+.. .+.+++++||++|.|++++++.|.+.+.+
T Consensus 129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 985421 122233333 35588999999999999999999887653
No 269
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.70 E-value=4.6e-17 Score=183.62 Aligned_cols=185 Identities=19% Similarity=0.259 Sum_probs=122.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccc--------------cCCCCcccceeEEEEeec-----CeeEEEEecCCccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV--------------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-----~~~i~liDTpG~~~ 223 (666)
..+|+|+|++|+|||||+++|+.....+. ....|+|.......+.|. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35799999999999999999986321111 113466776666666664 26799999999976
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+. ..+.+++..+|++|+|+|+..+...++...+..+.. .+
T Consensus 84 F~--------------------------------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ 123 (599)
T 3cb4_D 84 FS--------------------------------------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MD 123 (599)
T ss_dssp GH--------------------------------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TT
T ss_pred HH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CC
Confidence 22 334567889999999999999998888777666555 47
Q ss_pred CcEEEEeccCCCCccchhhH-HHHH-hcCC---CCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEec
Q 005979 304 KFIILAVNKCESPRKGIMQV-SEFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVG 378 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~~-~~~~-~~~~---~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG 378 (666)
.|+++|+||+|+........ .++. .+++ .++++||++|.|+++|++.|.+.++..... .+.+++..++.
T Consensus 124 ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI~d 197 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALIID 197 (599)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEEEE
T ss_pred CCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeeeee
Confidence 89999999999976432221 1221 2354 489999999999999999999998865421 12234444433
Q ss_pred C---CCCChhHHHHHHhc
Q 005979 379 R---PNVGKSSILNALVG 393 (666)
Q Consensus 379 ~---~nvGKSSLin~ll~ 393 (666)
. +++|+.++++-+-|
T Consensus 198 ~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 198 SWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp EEEETTTEEEEEEEEEES
T ss_pred ccccccccEEEEEEEEeC
Confidence 3 78888877766554
No 270
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.70 E-value=4.9e-17 Score=157.33 Aligned_cols=158 Identities=18% Similarity=0.066 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCC-------CCcccceeEEE--E-ee--cCeeEEEEecCCcccccCCchh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-------PGVTRDRMYGR--S-FW--GEHEFMLVDTGGVLNVSKSQPN 230 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~-------~~~t~~~~~~~--~-~~--~~~~i~liDTpG~~~~~~~~~~ 230 (666)
..+|+++|.+|||||||++.|.+......... ...|....... . .+ ....+.+|||||...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----- 88 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN----- 88 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS-----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH-----
Confidence 35899999999999999998887643221110 11122111111 1 12 23569999999986421
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHH----HHHHHh---hcCC
Q 005979 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI----ADWLRK---NYMD 303 (666)
Q Consensus 231 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i----~~~l~~---~~~~ 303 (666)
.....++..+|++|+|+|+..+....+... ..|+.. ...+
T Consensus 89 ---------------------------------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~ 135 (198)
T 3t1o_A 89 ---------------------------------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135 (198)
T ss_dssp ---------------------------------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTS
T ss_pred ---------------------------------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCC
Confidence 223356789999999999986544444333 344433 2257
Q ss_pred CcEEEEeccCCCCccch-hhHHHHH-hcCC-CCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 304 KFIILAVNKCESPRKGI-MQVSEFW-SLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~-~~~~~~~-~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.|+++|+||+|+..... .+...+. ..++ .++++||++|.|++++++.|.+.+.+.
T Consensus 136 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 136 VPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp SCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 89999999999876422 2222332 4577 889999999999999999998877643
No 271
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.70 E-value=1.8e-18 Score=195.97 Aligned_cols=156 Identities=24% Similarity=0.254 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCccccc------------------------------CCCCcccceeEEEEeecC
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGE 210 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 210 (666)
....+|+++|++|+|||||+|+|++....+.. ..+|+|.+.....+.+.+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34568999999999999999999753222111 256889998888888888
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC----
Q 005979 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---- 286 (666)
Q Consensus 211 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~---- 286 (666)
..+.||||||+..+.... ..++..+|++|||+|+..+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~--------------------------------------~~~~~~aD~alLVVDa~~g~~e~g 296 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM--------------------------------------IAGASSADFAVLVVDSSQNNFERG 296 (592)
T ss_dssp ----CCEEESSSEEEEEC--------------------------------------CC-------CCSEEEEEECCSSTT
T ss_pred eEEEEEECCChHHHHHHH--------------------------------------HHHHhhCCEEEEEEECCCCccccc
Confidence 999999999997643211 13457899999999998753
Q ss_pred ---CHHHHHHHHHHHhhcCCCc-EEEEeccCCCCccch-------hhHHHHH--hcCC-----CCeeecccCCCChH---
Q 005979 287 ---TAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI-------MQVSEFW--SLGF-----SPLPISAISGTGTG--- 345 (666)
Q Consensus 287 ---~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~~-------~~~~~~~--~~~~-----~~i~iSa~~g~Gi~--- 345 (666)
..+..+.+..+.. .+.| +|+|+||+|+..... .....+. ..|+ +++++||++|.|+.
T Consensus 297 i~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 297 FLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp SCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCC
T ss_pred cccchHHHHHHHHHHH--cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccc
Confidence 7777777777766 4665 999999999875211 1112222 2455 47999999999998
Q ss_pred -----------HHHHHHHHHhh
Q 005979 346 -----------ELLDLVCSELK 356 (666)
Q Consensus 346 -----------eLl~~I~~~l~ 356 (666)
.|++.|...++
T Consensus 375 ~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 375 SSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccccccchHHHHHHHHhhcc
Confidence 78888877655
No 272
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=6.4e-17 Score=159.74 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=106.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec------------CeeEEEEecCCcccccCCchh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPN 230 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~i~liDTpG~~~~~~~~~~ 230 (666)
..+|+++|.+|||||||+|+|++... .....+.++.+.....+.+. ...+.+|||||...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------- 96 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER------- 96 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------
Confidence 36899999999999999999998753 22222233333333334443 45799999999753
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc-----CCCc
Q 005979 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-----MDKF 305 (666)
Q Consensus 231 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~-----~~~p 305 (666)
+...+...+..+|++|||+|+..+.+. ..+..|+.... .+.|
T Consensus 97 -------------------------------~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~p 143 (217)
T 2f7s_A 97 -------------------------------FRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPD 143 (217)
T ss_dssp -------------------------------HHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCE
T ss_pred -------------------------------HHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCC
Confidence 123345677899999999999764322 23344554321 4689
Q ss_pred EEEEeccCCCCccch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 306 IILAVNKCESPRKGI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 306 ~ilv~NK~D~~~~~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+++|+||+|+..... .....+ ...++.++++||++|.|+++|++.|.+.+.+
T Consensus 144 iilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 144 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999875322 122222 2457789999999999999999999887754
No 273
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=7e-17 Score=152.36 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=100.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....+... ..........+ ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------------- 65 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP---------------- 65 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH----------------
Confidence 57999999999999999999987532 11122111 11112223333 468999999976411
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh---cCCCcEEEEeccCCCCc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESPR 317 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~---~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|+..+.+... ..+...+... ..+.|+++|+||+|+..
T Consensus 66 ----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 ----------------------AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp ----------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred ----------------------HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 223356788999999999985422221 2233333332 13789999999999865
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... ....+ ...+++++++||++|.|++++++.|.+.+..
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 3221 11222 2346788999999999999999999887653
No 274
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=154.36 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec--CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++...... ..+..+.+.......++ +..+.+|||||+.....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 89 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-------------- 89 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------------
Confidence 35899999999999999999998764322 22222223322333333 36789999999865321
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..+|++|+|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 90 ------------------------~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 ------------------------ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp ------------------------THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred ------------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 12355788999999999976433221 1233333332 247899999999998753
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .....+ ...++.++++||++|.|+.++++.|.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 21 122222 2457789999999999999999999887654
No 275
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=158.27 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcc-cccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
...+|+++|.+|||||||+|+|++.... ...+..+.+ .....+.+++ ..+.+|||||....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------- 90 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIVDGERTVLQLWDTAGQERF-------------- 90 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTC--------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEECCEEEEEEEEECCCCcch--------------
Confidence 3568999999999999999999987632 222222333 3333444554 56999999997541
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCC
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESP 316 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~ 316 (666)
...+...+..+|++|+|+|+..+.+..+ ..++..+... ..+.|+++|+||+|+.
T Consensus 91 ------------------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 91 ------------------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp ------------------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred ------------------------hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 1234466788999999999976533322 1233334332 1378999999999986
Q ss_pred cc------c---hhhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 317 RK------G---IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 317 ~~------~---~~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. . ......+ ...++.++++||++|.|+.++++.|.+.+.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 31 1 1111122 235678899999999999999999987764
No 276
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.70 E-value=4e-16 Score=145.90 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... .....+++.+.......+++ ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------------- 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------------- 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------------
Confidence 4799999999999999999998752 23334444444444455555 457899999975421
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+....+... ..+...+.... .+.|+++|+||+|+...
T Consensus 66 ----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 66 ----------------------AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp ----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred ----------------------HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 122356778999999999875422221 22333333321 37899999999998753
Q ss_pred ch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+++++++||++|.|+.++++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 21 122222 245778999999999999999999987764
No 277
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.7e-16 Score=153.06 Aligned_cols=155 Identities=20% Similarity=0.217 Sum_probs=103.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++... .....+++.+.....+.+++ ..+.+|||||.....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------------- 83 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------------- 83 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 5899999999999999999998752 33444555555555556666 458999999976422
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhhc--CCCcEEEEeccCCCCcc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPRK 318 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~--~~~p~ilv~NK~D~~~~ 318 (666)
......+..+|++++|+|+....+..+. .+...+.... .+.|+++|+||+|+...
T Consensus 84 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 84 ----------------------AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp ----------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred ----------------------HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 1223456789999999999765332221 2233333221 37899999999998753
Q ss_pred c--hhhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 G--IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~--~~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
. ......+ ...+++++++||++|.|+.++++.|.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 142 TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2 1122222 23577899999999999999999999887653
No 278
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=2.7e-17 Score=157.23 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=97.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.+.......+++ ..+.+|||||........
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR------------ 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTG------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhH------------
Confidence 46899999999999999999998752 23333433333222233444 346699999986533221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
...+..+|++++|+|+..+.+.... .+...++....+.|+++|+||+|+...
T Consensus 74 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 74 --------------------------PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp --------------------------GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred --------------------------HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 1346789999999999765333332 345555554457899999999998653
Q ss_pred ch-------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI-------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~-------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...+. +++++||++|.|++++++.|.+.+.
T Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 22 111222 23465 7899999999999999999987653
No 279
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.70 E-value=1.5e-16 Score=155.05 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=108.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (666)
.++|+++|.+|||||||+++|++.... ....++++.+.....+.. +|. .+.+|||||+.++..+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh-----------
Confidence 479999999999999999999986532 233344444544455554 554 67889999987654322
Q ss_pred HHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 449 ~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+++.+|++++|+|+++..+.++. .|+..+.. .+.|+++|+||+|+........ + . ...+....++
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~-~----~-a~~l~~~~~~ 142 (199)
T 2f9l_A 72 ---SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT-D----E-ARAFAEKNNL 142 (199)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-H----H-HHHHHHHTTC
T ss_pred ---HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH-H----H-HHHHHHHcCC
Confidence 2256789999999999876555543 35555544 3689999999999965332221 1 1 1223333457
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++.+||+++.|++++|+.|.+...
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 280
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3e-17 Score=158.88 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..+|+++|.+|||||||+|+|++..... .....+++...........+..+.+|||||....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 85 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY----------------- 85 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-----------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 5689999999999999999999865211 1122233333322222234567999999996531
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.......+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+....
T Consensus 86 ---------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 86 ---------------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp ---------------------HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred ---------------------HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 1334466789999999999976422211 2333444332 2478999999999986532
Q ss_pred hh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .... ....+++++++||++|.|+.++++.|.+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 21 1112 234577899999999999999999998877643
No 281
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=9.3e-17 Score=161.56 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=109.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCC--CcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP--GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..++|+++|.+|||||||+|+|+|... .....+ ++|.++......+.+..+.||||||+........++.+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~------ 100 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSK------ 100 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHH------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHH------
Confidence 457899999999999999999999874 344444 78999998888999999999999999864433322221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc---CCCcEEEEeccCCCC
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCESP 316 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~---~~~p~ilv~NK~D~~ 316 (666)
.+.+.+......+|++|+|+|+.. ++..+..++..+.+.+ ..+|+++|+||+|+.
T Consensus 101 ---------------------~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~ 158 (239)
T 3lxx_A 101 ---------------------EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDL 158 (239)
T ss_dssp ---------------------HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC
T ss_pred ---------------------HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC
Confidence 223333344456799999999874 5556665555554311 246999999999986
Q ss_pred ccchhh---------HHHH-HhcCCCCeeeccc-----CCCChHHHHHHHHHHhhhh
Q 005979 317 RKGIMQ---------VSEF-WSLGFSPLPISAI-----SGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 317 ~~~~~~---------~~~~-~~~~~~~i~iSa~-----~g~Gi~eLl~~I~~~l~~~ 358 (666)
...... ...+ ...+..++.+++. ++.|+.+|++.|...+.+.
T Consensus 159 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 159 GDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp ------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 532111 1111 2345455666554 3478999999998887654
No 282
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=157.99 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.+.......+++. .+.+|||||......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------------- 97 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------------- 97 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH--------------
Confidence 35899999999999999999998753 233334444444444555554 689999999864221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
.....+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 98 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 98 ------------------------LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred ------------------------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 122456789999999999865333222 244445444457899999999998754
Q ss_pred ch---------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .+...+ ...++ .++++||++|.|++++++.|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 21 111222 23566 78999999999999999999887754
No 283
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=9.1e-17 Score=159.09 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=102.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++++.... .....|.+..+.......+++ ..+.||||+|.+.+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~--------------- 77 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS--------------- 77 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGG---------------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh---------------
Confidence 5899999999999999999997652 223334444455444555555 4678999999875322
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~ 319 (666)
....+++.++++++|+|....-+... ..++..++. ...+.|+++|+||+|+....
T Consensus 78 -----------------------l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 78 -----------------------LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp -----------------------GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred -----------------------HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 12256789999999999876433222 122333332 23578999999999987643
Q ss_pred hh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 320 ~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. +...+ ...+..++++||++|.|++++++.|.+.+...
T Consensus 135 ~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp CSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred cccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 22 22222 34577889999999999999999999887643
No 284
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.69 E-value=9.6e-17 Score=179.21 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=89.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc---------------cc------CCCcceeeeEeEEEecCCCceEEEEEcC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI---------------VS------PISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~---------------~~------~~~gtT~d~~~~~~~~~~~~~~~liDTp 428 (666)
+.++|+++|++|+|||||+++|++..... +. ...|+|.......+.+ ++..++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 35799999999999999999999642111 11 1345555555555553 77899999999
Q ss_pred CCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
|+.++.. .+.++++.+|++|+|+|++++...+...++..+...++|+++|+||+|+...
T Consensus 91 G~~df~~--------------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSE--------------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCH--------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CChhHHH--------------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 9977632 3456789999999999999999999988988888889999999999999754
No 285
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.69 E-value=1.3e-17 Score=184.13 Aligned_cols=156 Identities=20% Similarity=0.222 Sum_probs=99.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc------------------------------ccCCCcceeeeEeEEEecCCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~~ 420 (666)
.++|+++|++|+|||||+++|++..... .....|+|++.....+.. ++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~ 121 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR 121 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence 4799999999999999999997422110 011357788776666664 678
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCC-------HHHHHHHHHHHHhCCc-EEEE
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT-------EQDCRIAERIEQEGKG-CLIV 492 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t-------~~d~~i~~~i~~~~~p-vIlv 492 (666)
.+.||||||+.+|.. .+..+++.+|++|+|+|++++.. .+..+.+..+...++| +|+|
T Consensus 122 ~~~iiDtPGh~~f~~--------------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT--------------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV 187 (467)
T ss_dssp EEEECCCCC-------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred EEEEEECCCcHHHHH--------------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 999999999977532 23457789999999999998742 3555666666777898 9999
Q ss_pred EecccCCCCc-chhhHHHHHHHHHHHHhcC-C-----CCCEEEEeCccCCCHHHHH
Q 005979 493 VNKWDTIPNK-NQQTATYYEQDVREKLRAL-D-----WAPIVYSTAIAGQSVDKII 541 (666)
Q Consensus 493 ~NK~Dl~~~~-~~~~~~~~~~~l~~~l~~~-~-----~~~ii~vSAk~g~gv~~L~ 541 (666)
+||+|+.... .....+....++.+.+... + .++++++||++|.|+.+++
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999996421 1223344444555555433 2 4679999999999998866
No 286
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=1.6e-16 Score=155.27 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ....+.++.+. ...+.+++ ..+.+|||||.........
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------ 91 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP------------ 91 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH------------
Confidence 58999999999999999999987632 22223333333 23345555 4789999999865332211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
..+..+|++++|+|+....+... ..+...+.....+.|+++|+||+|+....
T Consensus 92 --------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 92 --------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp --------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred --------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence 34578999999999876433222 24455555544589999999999987542
Q ss_pred h---------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHh
Q 005979 320 I---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 320 ~---------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. .....+ ...+. .++++||++|.|+++|++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1 011122 23455 689999999999999999998765
No 287
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=159.16 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||.........
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS----------- 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH-----------
Confidence 358999999999999999999987633 23334555555555566666 5789999999865433221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++|+|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 81 ---------------------------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 81 ---------------------------AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp ---------------------------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred ---------------------------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 34578999999999986543332 1233333332 247899999999998653
Q ss_pred ch---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 319 ~~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.. .....+ ...++.++++||++|.|++++++.|.+.+.+.
T Consensus 134 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 21 122222 24567889999999999999999999887654
No 288
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.68 E-value=1.2e-16 Score=166.05 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=104.3
Q ss_pred eEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHH
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (666)
||+++|.+|||||||++++.+..........+.|.......+ ....+++||||||+.++... .. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~-----~l------~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP-----SY------DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCC-----SH------HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccch-----hh------hhh
Confidence 689999999999999998875432211111222222222222 13468999999999887320 00 123
Q ss_pred HHHhhCCeEEEEeeccccCCHHHHHHHH-HHH---H--hCCcEEEEEecccCCCCcch-hhHHHHHHHHHHHHhcC----
Q 005979 453 RAIRRSDVVALVIEAMACITEQDCRIAE-RIE---Q--EGKGCLIVVNKWDTIPNKNQ-QTATYYEQDVREKLRAL---- 521 (666)
Q Consensus 453 ~~i~~advvllViDa~~~~t~~d~~i~~-~i~---~--~~~pvIlv~NK~Dl~~~~~~-~~~~~~~~~l~~~l~~~---- 521 (666)
.++++++++|+|+|+++. ......++. ++. + .+.|+++|+||+|+...... .....+..+..+.++..
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 478999999999999987 444444442 232 2 26899999999999764221 11223444455566664
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
.++++++|||++ .||.+.|..|.+
T Consensus 147 ~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 147 VQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp CCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred cCceEEEeccCC-CcHHHHHHHHHH
Confidence 468899999998 589999988874
No 289
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=7.5e-17 Score=159.38 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc-cccCCCCcccceeEEEEee-cC--eeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
..+|+++|.+|||||||+|+|++.... ......+.+..... ... .+ ..+.+|||||.........
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 79 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVLKD--------- 79 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE--EEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence 458999999999999999999976532 11222232222221 122 22 5699999999875432221
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHh-hcCCCcEEEEeccCCCC
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESP 316 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~-~~~~~p~ilv~NK~D~~ 316 (666)
..+..+|++|+|+|+..+.+..+. .++..+.. ...+.|+++|+||+|+.
T Consensus 80 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 80 -----------------------------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp -----------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred -----------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 446789999999999875443332 22233332 22358999999999987
Q ss_pred ccchhh---HHHHH-hcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 317 RKGIMQ---VSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 317 ~~~~~~---~~~~~-~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
...... ...+. ..++.++++||++|.|++++++.|.+.+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 642211 12222 34668999999999999999999998886543
No 290
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.68 E-value=5.5e-17 Score=180.99 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc---------------------ccCCCCcccceeEEEEeecCeeEEEEecCCc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI---------------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~ 221 (666)
.++|+|+|++|+|||||+|+|++...++ ....+|+|.......+.+.+..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3579999999999999999997321111 1113567777778888899999999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhc
Q 005979 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (666)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~ 301 (666)
.++. ..+.+++..+|++|+|+|+..+...++..++..+..
T Consensus 93 ~df~--------------------------------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~-- 132 (528)
T 3tr5_A 93 ADFT--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL-- 132 (528)
T ss_dssp TTCC--------------------------------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--
T ss_pred hhHH--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--
Confidence 7532 234567889999999999999999999988888877
Q ss_pred CCCcEEEEeccCCCCcc
Q 005979 302 MDKFIILAVNKCESPRK 318 (666)
Q Consensus 302 ~~~p~ilv~NK~D~~~~ 318 (666)
.+.|+++|+||+|+...
T Consensus 133 ~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCCEEEEEECTTSCCS
T ss_pred cCCCEEEEEeCCCCccc
Confidence 58999999999998653
No 291
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.68 E-value=1.2e-16 Score=157.85 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...+|+++|.+|||||||+|+|++... ...+..++.+.......+++ ..+.+|||||.........
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP---------- 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH----------
Confidence 346899999999999999999998763 23333333333233334444 5789999999875432221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~ 317 (666)
..+..+|++|+|+|+....+... ..++..++....+.|+++|+||+|+..
T Consensus 94 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 94 ----------------------------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred ----------------------------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 34578999999999987544333 245555655556889999999999865
Q ss_pred c------------c---hhhHHH-HHhcCC-CCeeecccCCCC-hHHHHHHHHHHhhh
Q 005979 318 K------------G---IMQVSE-FWSLGF-SPLPISAISGTG-TGELLDLVCSELKK 357 (666)
Q Consensus 318 ~------------~---~~~~~~-~~~~~~-~~i~iSa~~g~G-i~eLl~~I~~~l~~ 357 (666)
. . ...... ....++ .++++||++|.| +.+|++.|.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 2 0 111122 234577 789999999998 99999999887654
No 292
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.8e-16 Score=155.58 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++.... ..+.+++.+.......+++ ..+.+|||||........
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 90 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR------------- 90 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTG-------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHH-------------
Confidence 48999999999999999999987632 2233333333333445555 468999999986533221
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..+|++++|+|+....+... ..+...+.....+.|+++|+||+|+....
T Consensus 91 -------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 91 -------------------------PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp -------------------------GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred -------------------------HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 134578999999999876432222 34555565544589999999999987542
Q ss_pred hh---------------hHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 320 IM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 320 ~~---------------~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. ....+ ...+. .++++||++|.|+++|++.|.+.+.
T Consensus 146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 10 11111 13455 6899999999999999999988764
No 293
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=2.5e-16 Score=176.59 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=93.5
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcc---------------------cccCCCcceeeeEeEEEecCCCceEEEEEc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT---------------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDT 427 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~---------------------~~~~~~gtT~d~~~~~~~~~~~~~~~liDT 427 (666)
.+.++|+|+|+.++|||||..+|+..... ......|+|.......+. |++..++|+||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeC
Confidence 34578999999999999999999732211 111223677666666776 48899999999
Q ss_pred CCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
||+.+|. ..+.++++-+|++|+|+|+.+|+..|...+|+++.+.++|.|+++||+|....
T Consensus 108 PGHvDF~--------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFS--------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCS--------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred CCcHHHH--------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 9999884 24667899999999999999999999999999999999999999999998654
No 294
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=3.6e-16 Score=152.02 Aligned_cols=157 Identities=14% Similarity=0.086 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEe---ecCeeEEEEecCCcccccCCchhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF---WGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 237 (666)
....+|+++|.+|||||||++++.+..... ...+.+......... .....+.+|||||...+.....
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------- 87 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF-------- 87 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh--------
Confidence 346799999999999999999999864222 222222221121222 2336899999999865322210
Q ss_pred hhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHh---hcCCCcEEEEeccCC
Q 005979 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNKCE 314 (666)
Q Consensus 238 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~---~~~~~p~ilv~NK~D 314 (666)
.....+..+|++|+|+|+..+.......+..++.. ...+.|+++|+||+|
T Consensus 88 ---------------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 140 (196)
T 3llu_A 88 ---------------------------DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140 (196)
T ss_dssp ---------------------------CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ---------------------------hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 00255678999999999988744444555566554 245889999999999
Q ss_pred CCccch-----hh-----HHHHH-----hcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 315 SPRKGI-----MQ-----VSEFW-----SLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 315 ~~~~~~-----~~-----~~~~~-----~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
+..... .. ...+. ..+..++++||++ .|+.++++.|.+.+
T Consensus 141 l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 141 GLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 865321 00 11122 2345789999999 99999999988654
No 295
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=5.4e-16 Score=158.29 Aligned_cols=124 Identities=25% Similarity=0.320 Sum_probs=94.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|+|||||+|+|++.....+++.+++|.+.....+.. ++..+.||||||+.++.... + ....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~------~-~~~~ 106 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVN------H-QALE 106 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEEC------H-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccch------H-HHHH
Confidence 35799999999999999999999988777888899998888777764 78899999999998865432 1 1111
Q ss_pred HHHHHH--hhCCeEEEEeeccc-cCCHHHHHHHHHHHHh-C----CcEEEEEecccCCCC
Q 005979 450 RAFRAI--RRSDVVALVIEAMA-CITEQDCRIAERIEQE-G----KGCLIVVNKWDTIPN 501 (666)
Q Consensus 450 ~~~~~i--~~advvllViDa~~-~~t~~d~~i~~~i~~~-~----~pvIlv~NK~Dl~~~ 501 (666)
...+++ ..+|++|+|+|+.. .++..+..+++.+.+. + +|+++|+||+|+.+.
T Consensus 107 ~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 107 LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 122222 37899999987754 4677777888888764 2 499999999999644
No 296
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=157.10 Aligned_cols=157 Identities=20% Similarity=0.134 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee--cCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.++|+++|.+|||||||+|+|++.... ..+.+++.........+ ....+.+|||||.........
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 90 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY----------- 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG-----------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH-----------
Confidence 468999999999999999999987633 23333333333333333 346789999999865433222
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
..+..+|++++|+|+....+... ..+...+... ..+.|+++|+||+|+..
T Consensus 91 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 91 ---------------------------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp ---------------------------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred ---------------------------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 34578999999999985432222 1222223221 13689999999999875
Q ss_pred cchh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.... .... ....+.+++++||++|.|++++++.|.+.+....
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 4321 1122 2345678999999999999999999998886543
No 297
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=3.6e-16 Score=154.02 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec---CeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
.++|+++|.+|||||||+++|++.. ....+++++.+. ..+.++ +..+.+|||||+.....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~------------- 69 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGHESLRF------------- 69 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEE--EEEECSSTTCCEEEEEECCCCHHHHH-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceee--EEEEecCCCccEEEEEECCCChhHHH-------------
Confidence 5689999999999999999999876 233444444333 335555 56899999999864110
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHH----h---hcCCCcEEEEecc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR----K---NYMDKFIILAVNK 312 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~----~---~~~~~p~ilv~NK 312 (666)
......+..+|+++||+|+.. .......+.+++. . ...+.|+++|+||
T Consensus 70 ------------------------~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 70 ------------------------QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp ------------------------HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred ------------------------HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 123345788999999999875 2122223333322 2 1246899999999
Q ss_pred CCCCccchhh-H----HH-HH---------------------------------hc--CCCCeeecccCC------CChH
Q 005979 313 CESPRKGIMQ-V----SE-FW---------------------------------SL--GFSPLPISAISG------TGTG 345 (666)
Q Consensus 313 ~D~~~~~~~~-~----~~-~~---------------------------------~~--~~~~i~iSa~~g------~Gi~ 345 (666)
+|+....... . .. +. .+ +..++++||++| .|++
T Consensus 125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~ 204 (214)
T 2fh5_B 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 204 (214)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence 9987542110 0 00 00 01 335789999999 9999
Q ss_pred HHHHHHHHH
Q 005979 346 ELLDLVCSE 354 (666)
Q Consensus 346 eLl~~I~~~ 354 (666)
+++++|.+.
T Consensus 205 ~lf~~l~~~ 213 (214)
T 2fh5_B 205 DLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 298
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.67 E-value=3.2e-16 Score=180.75 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=89.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc-----------ccC------CCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------~~~------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
..++|+++|++|+|||||+|+|++..... +.+ .+|+|+......+.+ ++..++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence 35789999999999999999999532111 111 346666666666654 678999999999977
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
+.. .+.++++.+|++|+|+|++++.+.++..++..+.+.++|+|+|+||+|+...
T Consensus 88 f~~--------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTV--------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCH--------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hHH--------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 532 2456788999999999999999999999999999999999999999999753
No 299
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=4.9e-17 Score=158.87 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcc-cceeEEEEeecC----eeEEEEecCCcccccCCchhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~----~~i~liDTpG~~~~~~~~~~~~~~~~~ 237 (666)
..+|+++|.+|||||||+|+|++........+.+++ .+.....+.+++ ..+.+|||||+...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------- 86 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY------------- 86 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-------------
Confidence 358999999999999999999987322333444433 355555666664 47999999998641
Q ss_pred hhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc----CCCcEEEEecc
Q 005979 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNK 312 (666)
Q Consensus 238 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~----~~~p~ilv~NK 312 (666)
.......+..+|++|+|+|+..+.+... ..++..+.... .+.|+++|+||
T Consensus 87 -------------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 87 -------------------------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp -------------------------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred -------------------------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 1223345678999999999986543222 23333443322 37899999999
Q ss_pred CCCCc-cch---hhHHHH-HhcCCCCeeecccC-CCChHHHHHHHHHHhhh
Q 005979 313 CESPR-KGI---MQVSEF-WSLGFSPLPISAIS-GTGTGELLDLVCSELKK 357 (666)
Q Consensus 313 ~D~~~-~~~---~~~~~~-~~~~~~~i~iSa~~-g~Gi~eLl~~I~~~l~~ 357 (666)
+|+.. ... .....+ ..+++.++++||++ |.|+.++++.|.+.+.+
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 99876 221 122223 34677899999999 99999999999887754
No 300
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.67 E-value=7.7e-18 Score=185.66 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=116.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..++|+++|++|+|||||+++|++.. ......+|+|.+.....+.+++..+.+|||||+..+.....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~------------ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA------------ 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH------------
Confidence 35789999999999999999999864 33455678888887777778888999999999977543321
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
+.+..+|++++|+|+.++..++..+.+..++. .+.|+++|+||+|+......
T Consensus 70 --------------------------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 70 --------------------------RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPD 121 (501)
T ss_dssp --------------------------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCC
T ss_pred --------------------------HHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHH
Confidence 33577999999999999988888888877766 58899999999998653211
Q ss_pred hHH-HH-------HhcC--CCCeeecccCCCChHHHHHHHHHH
Q 005979 322 QVS-EF-------WSLG--FSPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 322 ~~~-~~-------~~~~--~~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
... .+ ..++ ++++++||++|.|+++|++.|...
T Consensus 122 ~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 100 00 0112 468999999999999999998653
No 301
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=162.65 Aligned_cols=156 Identities=20% Similarity=0.179 Sum_probs=103.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||.........
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 100 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS----------- 100 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH-----------
Confidence 4689999999999999999999876 3333345666667666677777 5699999999765433221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+....+... ..++..+... ..+.|+++|+||+|+...
T Consensus 101 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 101 ---------------------------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp ---------------------------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred ---------------------------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 34578999999999987543222 1233333332 136899999999998653
Q ss_pred chh---hHHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
... .... ....+++++++||++|.|+++|++.|.+.+.+
T Consensus 154 ~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred ccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 211 1222 23457789999999999999999999876653
No 302
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=6.8e-16 Score=151.44 Aligned_cols=169 Identities=19% Similarity=0.194 Sum_probs=106.6
Q ss_pred CceEEEecCCCCChhHHHHHHhccC-cccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHH--
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS-- 447 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~-- 447 (666)
..+|+++|.+|||||||+|+|+|.. ...+.+.+|+|+.... +.. ++ .+.+|||||+.....-. ...+.+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~---~~~~~~~~~ 98 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPE---EMKRKWQRA 98 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC---------CCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCH---HHHHHHHHH
Confidence 4689999999999999999999875 3455777888876432 222 22 68899999985421000 0001111
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC-CCCE
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD-WAPI 526 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~-~~~i 526 (666)
........+.++++++|+|++.+.+..+..+..++...++|+++|+||+|+........ ....++..+.... ..++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~---~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA---QLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH---HHHHHHHHHGGGCSCEEE
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH---HHHHHHHHHHhcCCCCce
Confidence 11222223578999999999988887777777778888999999999999876422111 1223334443332 4678
Q ss_pred EEEeCccCCCHHHHHHHHHHHHH
Q 005979 527 VYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 527 i~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
+++||+++.|++++++.|.+...
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEEeecCCCCHHHHHHHHHHHHh
Confidence 99999999999999999886643
No 303
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.67 E-value=5.2e-16 Score=147.90 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=101.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+|+|++..... +..++.+.....+.+++ ..+.+|||||... .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~------------ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A------------ 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h------------
Confidence 589999999999999999999876432 22222233334445555 4588999999753 0
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh----cCCCcEEEEeccCCCC
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESP 316 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~----~~~~p~ilv~NK~D~~ 316 (666)
..++.+|++++|+|...+.+.... .+.+++... ..+.|+++|+||+|+.
T Consensus 68 --------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 --------------------------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp --------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred --------------------------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 346789999999999865433322 222234332 1468999999999984
Q ss_pred c--cc---hhhHHHHHh-c-CCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 317 R--KG---IMQVSEFWS-L-GFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 317 ~--~~---~~~~~~~~~-~-~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .. ......+.. . +++++++||++|.|++++++.|.+.+..
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 2 11 112222322 2 5688999999999999999999887654
No 304
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.8e-16 Score=152.43 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++..... ...+... .........++ ..+.+|||||.....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 70 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFP--------------- 70 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCC-EEEEEEEEETTEEEEEEEEECCGGGSCH---------------
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccc-cceeEEEEECCEEEEEEEEeCCChHHhH---------------
Confidence 4689999999999999999999865321 1112111 11122223333 478999999976421
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh---cCCCcEEEEeccCCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESP 316 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~---~~~~p~ilv~NK~D~~ 316 (666)
......+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+.
T Consensus 71 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 71 -----------------------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred -----------------------HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 223356788999999999976422221 1233333321 1368999999999987
Q ss_pred ccch--hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 317 RKGI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 317 ~~~~--~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
.... .....+ ...++.++++||++|.|+++|++.|.+.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 128 QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp SCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred ccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 5322 112222 24567889999999999999999999877643
No 305
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.67 E-value=4e-16 Score=169.68 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc--cccCCCCcccceeEEEEeec-----------------------CeeEEEEe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFWG-----------------------EHEFMLVD 217 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~~-----------------------~~~i~liD 217 (666)
..+|+++|++|+|||||+++|+|.... .....+|+|.+..+....+. ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 358999999999999999999976321 22334677877665443331 16799999
Q ss_pred cCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-CHHHHHHHHH
Q 005979 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADW 296 (666)
Q Consensus 218 TpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-~~~d~~i~~~ 296 (666)
|||+.++ .....+.+..+|++|+|+|+..+. .++..+.+..
T Consensus 90 tPGh~~f--------------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 131 (410)
T 1kk1_A 90 APGHEAL--------------------------------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131 (410)
T ss_dssp CSSHHHH--------------------------------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCChHHH--------------------------------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH
Confidence 9998641 133456678899999999999887 7787777766
Q ss_pred HHhhcCCCcEEEEeccCCCCccchh-----hHHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 297 LRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 297 l~~~~~~~p~ilv~NK~D~~~~~~~-----~~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
++.. ..+|+++|+||+|+...... +...+.. .+++++++||++|.|+++|++.|.+.++..
T Consensus 132 ~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 132 LQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 6553 24689999999999764321 1122322 245789999999999999999999877643
No 306
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.67 E-value=4.6e-16 Score=168.82 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCc--------------cccee-----EEEEeecCeeEEEEecCCcc
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV--------------TRDRM-----YGRSFWGEHEFMLVDTGGVL 222 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~--------------t~~~~-----~~~~~~~~~~i~liDTpG~~ 222 (666)
...+|+++|++|+|||||+|+|++........+... +.+.. ..........+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 457899999999999999999998532111111110 00000 00001122689999999986
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-CHHHHHHHHHHHhhc
Q 005979 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADWLRKNY 301 (666)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-~~~d~~i~~~l~~~~ 301 (666)
.+ ...+...+..+|++|+|+|+..+. ..+..+.+..++..
T Consensus 87 ~~--------------------------------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~- 127 (403)
T 3sjy_A 87 VL--------------------------------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII- 127 (403)
T ss_dssp GG--------------------------------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-
T ss_pred HH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-
Confidence 41 234557788999999999999987 77777777777653
Q ss_pred CCCcEEEEeccCCCCccchhh-----HHHHHh-c---CCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 302 MDKFIILAVNKCESPRKGIMQ-----VSEFWS-L---GFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 302 ~~~p~ilv~NK~D~~~~~~~~-----~~~~~~-~---~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
..+|+++|+||+|+....... ...+.. . +.+++++||++|.|+++|++.|.+.++..
T Consensus 128 ~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 128 GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 246899999999997643211 111211 1 44789999999999999999999877643
No 307
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.66 E-value=6.3e-16 Score=149.86 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=109.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~~ 447 (666)
..++|+++|.+|||||||+++|++... .....++++.+.....+.. +|. .+.+|||||+.++..+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------- 95 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT---------- 95 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh----------
Confidence 357999999999999999999997653 2334455555555555554 555 45679999997764432
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHH-HHHHHHHH---hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~-~i~~~i~~---~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (666)
..+++.++++++|+|+++..+.++. .|+..+.. .+.|+++|+||+|+........ + ....+.....
T Consensus 96 ----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~-~-----~a~~l~~~~~ 165 (191)
T 1oix_A 96 ----SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT-D-----EARAFAEKNG 165 (191)
T ss_dssp ----HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-H-----HHHHHHHHTT
T ss_pred ----HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-H-----HHHHHHHHcC
Confidence 2356889999999999876544443 35555544 3689999999999964332221 1 1223333345
Q ss_pred CCEEEEeCccCCCHHHHHHHHHHH
Q 005979 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (666)
Q Consensus 524 ~~ii~vSAk~g~gv~~L~~~i~~~ 547 (666)
+.++.+||+++.|++++|+.|.+.
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 789999999999999999998753
No 308
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=150.72 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++... ...+.+++.+.......+++ ..+.+|||||.......
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------- 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC------------- 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-------------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-------------
Confidence 35899999999999999999998762 23444444443333344444 56889999998643211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh----cCCCcEEEEeccCCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCES 315 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~----~~~~p~ilv~NK~D~ 315 (666)
...+..+|++++|+|....-+.... .++..+... ..+.|+++|+||+|+
T Consensus 86 --------------------------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 86 --------------------------ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred --------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 1356789999999999854322221 223333322 147899999999998
Q ss_pred Cccch---hhHHHH-HhcCCCCeeecc-cCCCChHHHHHHHHHHhh
Q 005979 316 PRKGI---MQVSEF-WSLGFSPLPISA-ISGTGTGELLDLVCSELK 356 (666)
Q Consensus 316 ~~~~~---~~~~~~-~~~~~~~i~iSa-~~g~Gi~eLl~~I~~~l~ 356 (666)
..... .....+ ...++.++++|| ++|.|+.++++.|.+.+.
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 65321 122222 345778999999 899999999999987664
No 309
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=6.1e-17 Score=174.58 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=49.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEec--------------------CC---CceEEEEEcC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PE---GQKFRLIDTA 428 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~--------------------~~---~~~~~liDTp 428 (666)
++|+++|.||||||||+|+|++.. ..++++|+||++........ .+ ...+.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999887 77889999999877654211 02 2479999999
Q ss_pred CCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc
Q 005979 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (666)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~ 470 (666)
|+.+.... ......+++.+++.+|++++|+|++++
T Consensus 80 G~~~~a~~-------~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHE-------GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchhh-------hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 98653211 111123334567999999999999874
No 310
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.66 E-value=1.8e-16 Score=178.90 Aligned_cols=155 Identities=23% Similarity=0.324 Sum_probs=110.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee------------------cCeeEEEEecCCcccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGVLNV 224 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~i~liDTpG~~~~ 224 (666)
.++|+++|++|+|||||+|+|++.... .....++|.+.......+ ....+.+|||||+..+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 579999999999999999999986421 111225555543333222 1125999999999875
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCC
Q 005979 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~ 304 (666)
..... +.+..+|++|+|+|+.+|+.+++.+.+++++. .+.
T Consensus 84 ~~~~~--------------------------------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~v 123 (594)
T 1g7s_A 84 TTLRK--------------------------------------RGGALADLAILIVDINEGFKPQTQEALNILRM--YRT 123 (594)
T ss_dssp TTSBC--------------------------------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTC
T ss_pred HHHHH--------------------------------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCC
Confidence 44322 33567999999999999999999988888877 589
Q ss_pred cEEEEeccCCCCccch---------------h-----------hH-HHHHhcCC---------------CCeeecccCCC
Q 005979 305 FIILAVNKCESPRKGI---------------M-----------QV-SEFWSLGF---------------SPLPISAISGT 342 (666)
Q Consensus 305 p~ilv~NK~D~~~~~~---------------~-----------~~-~~~~~~~~---------------~~i~iSa~~g~ 342 (666)
|+++|+||+|+..... . .. ..+...++ +++++||++|.
T Consensus 124 PiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~ 203 (594)
T 1g7s_A 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE 203 (594)
T ss_dssp CEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT
T ss_pred eEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC
Confidence 9999999999864210 0 00 11122222 68999999999
Q ss_pred ChHHHHHHHHHHhhhh
Q 005979 343 GTGELLDLVCSELKKV 358 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~~ 358 (666)
|+++|++.|...++..
T Consensus 204 GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 204 GIPELLTMLMGLAQQY 219 (594)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHhhcccc
Confidence 9999999999877643
No 311
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.66 E-value=7.4e-16 Score=177.63 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=88.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-----cc------cC------CCcceeeeEeEEEecCCCceEEEEEcCCCcc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IV------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-----~~------~~------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~ 432 (666)
..++|+++|++|+|||||+|+|+..... .+ .+ ..++|.......+.+ ++..++||||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 3579999999999999999999842111 01 11 346666655555653 678999999999976
Q ss_pred ccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
+. ..+.++++.+|++|+|+|++++.+.++..++..+...++|+++|+||+|+...
T Consensus 90 f~--------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FT--------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CH--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hH--------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 52 23456889999999999999999999999999888999999999999999753
No 312
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=5.9e-16 Score=150.36 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ..+.+++.........+++ ..+.+|||||+.. .
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~----------- 89 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T----------- 89 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c-----------
Confidence 468999999999999999999987632 2233333333333345554 5689999999864 1
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|+...-+... ..+...+... ..+.|+++|+||+|+..
T Consensus 90 -----------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 90 -----------------------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -----------------------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 123356788999999999976422221 1223333321 24789999999999875
Q ss_pred cch---hhHHHH-HhcCCCCeeecccCCC-ChHHHHHHHHHHhhh
Q 005979 318 KGI---MQVSEF-WSLGFSPLPISAISGT-GTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~---~~~~~~-~~~~~~~i~iSa~~g~-Gi~eLl~~I~~~l~~ 357 (666)
... .....+ ...+++++++||++|. |+.++++.|.+.+.+
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 321 122222 2356789999999999 999999999887754
No 313
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=164.16 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|.+|||||||+|+|++.... ...| |.+.....+.+.+..+.+|||||...+..
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 224 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP---------------- 224 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CC----------------
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHH----------------
Confidence 458999999999999999999987632 2333 66666677778889999999999765322
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHH--HHHHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~--d~~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
.....+..+|++|+|+|+...-+.. ...+...+... ..+.|+++|+||+|+....
T Consensus 225 ----------------------~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 225 ----------------------LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp ----------------------SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred ----------------------HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 1235578899999999997654433 33444444332 2478999999999987643
Q ss_pred h-hhHHHHHhc------CCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~-~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ......... ++.++++||++|.|+++|++.|.+.+.+
T Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 283 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 2 122222222 2357999999999999999999887753
No 314
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.66 E-value=7.6e-16 Score=167.36 Aligned_cols=157 Identities=18% Similarity=0.102 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc--cccCCCCcccceeEEEEee---------------c--------CeeEEEEe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFW---------------G--------EHEFMLVD 217 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~---------------~--------~~~i~liD 217 (666)
..+|+++|++|+|||||+++|+|.... .....+|+|.+..+....+ . ...+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 468999999999999999999976421 2223457777665443322 1 16799999
Q ss_pred cCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC-CHHHHHHHHH
Q 005979 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADW 296 (666)
Q Consensus 218 TpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~-~~~d~~i~~~ 296 (666)
|||+..+ .....+.+..+|++|+|+|+..+. .++..+.+..
T Consensus 88 tPGh~~f--------------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 129 (408)
T 1s0u_A 88 SPGHETL--------------------------------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA 129 (408)
T ss_dssp CSSHHHH--------------------------------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCCHHHH--------------------------------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH
Confidence 9998641 123345567789999999999887 7777777766
Q ss_pred HHhhcCCCcEEEEeccCCCCccch-----hhHHHHHh----cCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 297 LRKNYMDKFIILAVNKCESPRKGI-----MQVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 297 l~~~~~~~p~ilv~NK~D~~~~~~-----~~~~~~~~----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
++.. ..+|+++|+||+|+..... .+...+.. .+.+++++||++|.|+++|++.|.+.++..
T Consensus 130 ~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 130 LEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 6543 2358999999999876431 11222322 245789999999999999999999877643
No 315
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.66 E-value=1.9e-15 Score=174.47 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=91.0
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc-----------ccC------CCcceeeeEeEEEecCCC-------ceEEEE
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEG-------QKFRLI 425 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------~~~------~~gtT~d~~~~~~~~~~~-------~~~~li 425 (666)
+.++|+++|++|+|||||+++|+...... +.+ ..|+|.......+.+ ++ ..++||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEE
Confidence 45799999999999999999997532111 111 345666655555543 44 789999
Q ss_pred EcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCC
Q 005979 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~ 501 (666)
||||+.+|. ..+.++++.+|++|+|+|++++.+.+...+++.+...++|+++|+||+|+...
T Consensus 88 DTPG~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFT--------------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchH--------------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 999997752 23456889999999999999999999999998888889999999999998653
No 316
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=5.8e-16 Score=160.81 Aligned_cols=167 Identities=21% Similarity=0.272 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcc-----cccCCCC----------------------ccccee-----------
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDRM----------- 202 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~-----~~~~~~~----------------------~t~~~~----------- 202 (666)
...++|+++|.+|||||||+|+|+|.... .+...|+ +|.+..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998754 3344454 333310
Q ss_pred ------------EEEEee-cCeeEEEEecCCcccccCC--chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHH
Q 005979 203 ------------YGRSFW-GEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (666)
Q Consensus 203 ------------~~~~~~-~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~ 267 (666)
...+.. .+..+.+|||||+...... ... +...+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~---------------------------~~~~~~~~~~ 156 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD---------------------------IEFQIRDMLM 156 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTT---------------------------HHHHHHHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCch---------------------------HHHHHHHHHH
Confidence 000111 1368999999999752210 111 1112345566
Q ss_pred HHHHhccEEE-EEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHH----hc--CC-CCeeecc
Q 005979 268 AAIEESCVII-FLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFW----SL--GF-SPLPISA 338 (666)
Q Consensus 268 ~~i~~ad~il-~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~----~~--~~-~~i~iSa 338 (666)
.++..++.++ +|+|+..++...+. .+++.+.. .+.|+++|+||+|+............ .+ ++ +++++||
T Consensus 157 ~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA 234 (299)
T 2aka_B 157 QFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234 (299)
T ss_dssp HHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCC
T ss_pred HHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCCh
Confidence 7777777555 79999888776664 46666654 47899999999998754321111111 11 33 5789999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 005979 339 ISGTGTGELLDLVCSELK 356 (666)
Q Consensus 339 ~~g~Gi~eLl~~I~~~l~ 356 (666)
++|.|+++|++.|.+..+
T Consensus 235 ~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 235 KDIDGKKDITAALAAERK 252 (299)
T ss_dssp BCTTSCBCHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHH
Confidence 999999999999876443
No 317
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.65 E-value=5.2e-16 Score=165.98 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=113.3
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|++|+|||||+++|+ ..|+|.+.....+.+.+..+.+|||||+.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------------------- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT-------------------- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC--------------------
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH--------------------
Confidence 79999999999999999998 3467778877777888899999999999652
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcE-EEEec-cCCCCccchhh
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVN-KCESPRKGIMQ 322 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~-ilv~N-K~D~~~~~~~~ 322 (666)
.......+..+|++|+|+| ..+..++..+.+..+.. .+.|. ++|+| |+|+ ......
T Consensus 74 ------------------~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~ 131 (370)
T 2elf_A 74 ------------------LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAID 131 (370)
T ss_dssp ------------------HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHH
T ss_pred ------------------HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHH
Confidence 1234466789999999999 88999888888887776 46777 89999 9999 532211
Q ss_pred -----HHHHHh-cC---CCCee--ecccC---CCChHHHHHHHHHHhhhh
Q 005979 323 -----VSEFWS-LG---FSPLP--ISAIS---GTGTGELLDLVCSELKKV 358 (666)
Q Consensus 323 -----~~~~~~-~~---~~~i~--iSa~~---g~Gi~eLl~~I~~~l~~~ 358 (666)
..++.. .+ +++++ +||++ |.|+++|++.|.+.++..
T Consensus 132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 122221 22 46899 99999 999999999999887754
No 318
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.65 E-value=8.6e-16 Score=149.08 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|++++.....+..+++++.+.....+.+++. .+.+|||+|....... +
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~----~-------- 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW----L-------- 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT----T--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh----H--------
Confidence 3589999999999999999999755445555556666665556677775 4678999997541100 0
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
....+..+|++++|+|....-+... ..+...+... ..+.|+++|+||+|+..
T Consensus 74 -------------------------~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 74 -------------------------HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -------------------------GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred -------------------------HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 0123567899999999875432222 1233334332 24789999999999865
Q ss_pred cchhh---HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..... ...+ ...+..++++||++|.|++++++.|.+.+..
T Consensus 129 ~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 32211 1111 2345678999999999999999999887754
No 319
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=1.4e-16 Score=157.31 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=85.1
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccc--cCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~--~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...++|+++|.+|+|||||+|+|++...... ...++++.+. .+..+.+|||||+.++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~---------- 71 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYK---------- 71 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHH----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHH----------
Confidence 3468999999999999999999997653211 2333333322 4567999999999765321
Q ss_pred HHHHHHHHHhh----CCeEEEEeecc-ccCC-HHHHHHHHHHHH-------hCCcEEEEEecccCCCCcchhhHH-HHHH
Q 005979 447 SVNRAFRAIRR----SDVVALVIEAM-ACIT-EQDCRIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTAT-YYEQ 512 (666)
Q Consensus 447 ~~~~~~~~i~~----advvllViDa~-~~~t-~~d~~i~~~i~~-------~~~pvIlv~NK~Dl~~~~~~~~~~-~~~~ 512 (666)
...+++. +|++|+|+|++ +..+ .....++..+.. .++|+++|+||+|+.......... .+.+
T Consensus 72 ----~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 147 (218)
T 1nrj_B 72 ----LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 147 (218)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred ----HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHH
Confidence 1223344 89999999998 4333 222334433332 479999999999998754432211 1122
Q ss_pred HHHHHHhcCCCCCEEEEeCccCCC
Q 005979 513 DVREKLRALDWAPIVYSTAIAGQS 536 (666)
Q Consensus 513 ~l~~~l~~~~~~~ii~vSAk~g~g 536 (666)
.+ ..+....+.+++++||++|.+
T Consensus 148 ~~-~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 148 EI-QKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHHHHHHHHHC--------
T ss_pred HH-HHHHHHHhccccccccccccc
Confidence 22 222222346789999999875
No 320
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.65 E-value=9.5e-16 Score=160.18 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=114.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.+|+++|.+|||||||+|+|++.....+...++.|.+...+...+ ++..+.+|||||...+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 66 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM----------------- 66 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh-----------------
Confidence 479999999999999999999886566777889999998887776 56789999999986420
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHH---HhhcCCCcEEEEeccCCCCcc
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL---RKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l---~~~~~~~p~ilv~NK~D~~~~ 318 (666)
...+.......+..+|++++|+|+....+..+. .+.+++ .....+.|+++|+||+|+...
T Consensus 67 ----------------~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 67 ----------------ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp ----------------HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ----------------hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 001112344567889999999999877554443 223333 333357999999999998762
Q ss_pred chh---------hHHHH-HhcC---CCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 GIM---------QVSEF-WSLG---FSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~~~---------~~~~~-~~~~---~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
... ....+ ..+| .+++++||++ .|+.+++..+...+
T Consensus 131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 111 11222 2345 4789999999 88888888877644
No 321
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=1.1e-15 Score=156.69 Aligned_cols=125 Identities=22% Similarity=0.318 Sum_probs=95.8
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (666)
..++|+++|.+|+|||||+|+|++.....+++.+++|.+.....+.. ++..+.||||||+.++..+. .. ...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~------~~-~~~ 109 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYIN------DM-ALN 109 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEEC------HH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccch------HH-HHH
Confidence 35799999999999999999999988777888899998887766664 77899999999998764432 11 111
Q ss_pred HHHHH--HhhCCeEEEEeeccc-cCCHHHHHHHHHHHHh-C----CcEEEEEecccCCCCc
Q 005979 450 RAFRA--IRRSDVVALVIEAMA-CITEQDCRIAERIEQE-G----KGCLIVVNKWDTIPNK 502 (666)
Q Consensus 450 ~~~~~--i~~advvllViDa~~-~~t~~d~~i~~~i~~~-~----~pvIlv~NK~Dl~~~~ 502 (666)
...++ .+.+|++|+|+|++. .++..+..+++.+.+. + +|+++|+||+|+.+..
T Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 110 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 11222 347999999988754 5677788888887654 3 6999999999997643
No 322
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.65 E-value=1.7e-15 Score=145.96 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=102.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++..... .... |.+.....+.+++ ..+.+|||||...+
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 80 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------------- 80 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCC-CcceEEEEEEECCEEEEEEEEECCCChhh----------------
Confidence 4689999999999999999999876321 1222 2333334556666 45678999998641
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d-~~i~~~l~~~~--~~~p~ilv~NK~D~~~ 317 (666)
+.+..+|++++|+|+....+... ..++..+.... .+.|+++|+||+|+..
T Consensus 81 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 81 ---------------------------QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp ---------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred ---------------------------heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 15678999999999986543333 23444444321 3679999999999842
Q ss_pred --cc---hhhHHHH-HhcC-CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 --KG---IMQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 --~~---~~~~~~~-~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. ......+ ...+ ..++++||++|.|++++++.|.+.+..
T Consensus 134 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 11 1122222 2344 578999999999999999999887654
No 323
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.65 E-value=9.2e-16 Score=172.65 Aligned_cols=157 Identities=25% Similarity=0.336 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc--------c------cCCCCcccceeEEEEeec---C--eeEEEEecCCccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~--------~------~~~~~~t~~~~~~~~~~~---~--~~i~liDTpG~~~ 223 (666)
..+|+|+|++|+|||||+++|++..... + ....|+|.......+.|. + ..+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4579999999999999999997632111 0 112456666555555553 2 6788999999976
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
+. ..+.+++..+|++|+|+|+..+...++...+..+.. .+
T Consensus 86 F~--------------------------------------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ 125 (600)
T 2ywe_A 86 FS--------------------------------------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QD 125 (600)
T ss_dssp GH--------------------------------------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TT
T ss_pred HH--------------------------------------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CC
Confidence 32 234466789999999999999999888877766655 58
Q ss_pred CcEEEEeccCCCCccchhhH-HHHH-hcCC---CCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 304 KFIILAVNKCESPRKGIMQV-SEFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 304 ~p~ilv~NK~D~~~~~~~~~-~~~~-~~~~---~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
.|+++|+||+|+........ .++. .+++ .++++||++|.|+.+|++.|.+.++...
T Consensus 126 ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 89999999999976543222 2222 2455 4899999999999999999999987543
No 324
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=7.9e-16 Score=151.79 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|++++....++..+++++.+.....+.+++. .+.+|||+|.... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~~---------- 102 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----NE---------- 102 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----HH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----hh----------
Confidence 3589999999999999999999866555555566666665556667775 4678999997531 00
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~ 317 (666)
......++.+|++++|+|....-+.... .+...+... ..+.|+++|+||+|+..
T Consensus 103 -----------------------~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 -----------------------WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp -----------------------HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred -----------------------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 0111234568999999998753222221 233334321 24789999999999865
Q ss_pred cchh---hHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.... ....+ ...++.++++||++|.|++++++.|.+.+..
T Consensus 160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3211 11111 2356678999999999999999999887753
No 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.65 E-value=6.8e-16 Score=172.23 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=109.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
.+|+++|.+|||||||+|+|++.... ... .|.+.....+.+.+..+.+|||||...+...
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------------- 382 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL---------------- 382 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--CCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGG----------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHH----------------
Confidence 58999999999999999999988732 223 3666777777888899999999997653221
Q ss_pred CCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEeccCCCCccch
Q 005979 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (666)
Q Consensus 244 ~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~ 320 (666)
+..++..+|++|+|+|+..+.+... ..+...++. ...++|+++|+||+|+.....
T Consensus 383 ----------------------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 440 (497)
T 3lvq_E 383 ----------------------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 440 (497)
T ss_dssp ----------------------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC
T ss_pred ----------------------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC
Confidence 2245688999999999987543332 233333332 124789999999999875421
Q ss_pred -hhHHHHHhc------CCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 321 -MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 321 -~~~~~~~~~------~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
......... ++.++++||++|.|+++|+++|.+.+....
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 441 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 112222211 224899999999999999999998886543
No 326
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=4.9e-16 Score=172.49 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc------------------------------ccccCCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++|++|+|||||+|+|++... ......+|+|.+.....+...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 45899999999999999999976521 112234588999888888888999
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-------
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~------- 285 (666)
+.+|||||+..+ ...+..++..+|++|+|+|+..+
T Consensus 113 ~~iiDTPG~~~f--------------------------------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 113 FTIVDAPGHRDF--------------------------------------VPNAIMGISQADMAILCVDCSTNAFESGFD 154 (483)
T ss_dssp EEEECCCCCGGG--------------------------------------HHHHHHHHTTCSEEEEEEECCC------CC
T ss_pred EEEEECCCcHHH--------------------------------------HHHHHHhhhhCCEEEEEEECCCCccccccc
Confidence 999999999652 24455778999999999999987
Q ss_pred CCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh-------HHHH-HhcC-----CCCeeecccCCCChHH
Q 005979 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-------VSEF-WSLG-----FSPLPISAISGTGTGE 346 (666)
Q Consensus 286 ~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~-------~~~~-~~~~-----~~~i~iSa~~g~Gi~e 346 (666)
+..+..+.+..+... ..+|+++|+||+|+....... ...+ ...| .+++++||++|.|+.+
T Consensus 155 ~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 155 LDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 556777777777653 235699999999987622111 1111 1233 3579999999999975
No 327
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=8.5e-16 Score=160.94 Aligned_cols=170 Identities=24% Similarity=0.248 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCc-----ccccCCCC---cccce-------------------------------
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEPG---VTRDR------------------------------- 201 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~-----~~~~~~~~---~t~~~------------------------------- 201 (666)
...|+|+++|++|+|||||+|+|+|... ..+...|+ +++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3468999999999999999999999875 23333441 22210
Q ss_pred -------------------eEEE-EeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHH
Q 005979 202 -------------------MYGR-SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSM 261 (666)
Q Consensus 202 -------------------~~~~-~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 261 (666)
..-. ....+..+.+|||||+........ ...+...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~-------------------------~~~~~~~ 156 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQ-------------------------PTDIEQQ 156 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------------------------------CSHHH
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCC-------------------------chhHHHH
Confidence 0000 111346799999999964211000 0112334
Q ss_pred HHHHHHHHHHhccEEEEEecC-CCCCCHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHH----h--cCC-C
Q 005979 262 IERQATAAIEESCVIIFLVDG-QAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFW----S--LGF-S 332 (666)
Q Consensus 262 i~~~~~~~i~~ad~il~VvD~-~~~~~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~----~--~~~-~ 332 (666)
+...+..++..+|++++|+|+ ..++...+ ..+.+++.. .++|+++|+||+|+............ . .++ +
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 234 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIG 234 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEE
Confidence 556778889999999999997 55555444 467777765 57899999999998754321111111 1 122 3
Q ss_pred CeeecccC---CCChHHHHHHHHHHhhh
Q 005979 333 PLPISAIS---GTGTGELLDLVCSELKK 357 (666)
Q Consensus 333 ~i~iSa~~---g~Gi~eLl~~I~~~l~~ 357 (666)
++++||.+ +.|+.++++.+.++++.
T Consensus 235 v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 235 VINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 55667777 89999999999988875
No 328
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=5.2e-16 Score=149.11 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=101.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ..+..+........+.+++ ..+.+|||||...+.....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 73 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 73 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-----------
Confidence 358999999999999999999987532 2222222222222334444 5689999999865332211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++++|+|+..+.+... ..+...++....+.|+++|+||+|+...
T Consensus 74 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 74 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 23578999999999986433332 2334445544457899999999998742
Q ss_pred c---------------hhhHHHHH-hcC-CCCeeeccc-CCCChHHHHHHHHHHh
Q 005979 319 G---------------IMQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~---------------~~~~~~~~-~~~-~~~i~iSa~-~g~Gi~eLl~~I~~~l 355 (666)
. ......+. ..+ .+++++||+ +|.|++++++.|.+.+
T Consensus 127 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1 11122232 345 478999998 6899999999988754
No 329
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=6.2e-16 Score=165.32 Aligned_cols=167 Identities=23% Similarity=0.250 Sum_probs=110.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCccee------------------------------------------
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTR------------------------------------------ 407 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~------------------------------------------ 407 (666)
..++|+|+|.+|+|||||+|+|+|......... .+|+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 457999999999999999999998654222211 1111
Q ss_pred ------------eeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc--CCH
Q 005979 408 ------------DAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC--ITE 473 (666)
Q Consensus 408 ------------d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~--~t~ 473 (666)
+.+...+..+.+..+.||||||+.++..... ...........+..+++.+|++|+|+|+... .+.
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q-~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ-SDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC-CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCC-chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 1112222222355799999999987633211 1234555567788899999999999987532 234
Q ss_pred HHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHH
Q 005979 474 QDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAA 544 (666)
Q Consensus 474 ~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i 544 (666)
....+++.+...++|+|+|+||+|+.+..... . .+.+......+.+++++|++++.++++.+..+
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~-~-----~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDA-V-----EILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS-H-----HHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccH-H-----HHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 44566666666789999999999998654321 1 11122233445789999999999988765443
No 330
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.64 E-value=3.9e-16 Score=169.51 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=115.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC--------Cccc--c------cCCCCcccceeEEEEeecCeeEEEEecCCcccccC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG--------NRAI--V------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~--------~~~~--~------~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 226 (666)
..+|+++|++|+|||||+|+|++. .... . ....|+|.+.....+.+.+..+.+|||||+.++
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH--
Confidence 358999999999999999999873 1000 0 113567777766666667789999999999752
Q ss_pred CchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-
Q 005979 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p- 305 (666)
...+...+..+|++|+|+|+..+...+..+++..++. .+.|
T Consensus 89 ------------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~ 130 (405)
T 2c78_A 89 ------------------------------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPY 130 (405)
T ss_dssp ------------------------------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCC
T ss_pred ------------------------------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCE
Confidence 1344567889999999999999998888888887776 4778
Q ss_pred EEEEeccCCCCcc-chh-----hHHHH-HhcC-----CCCeeecccCCCC------------------hHHHHHHHHHHh
Q 005979 306 IILAVNKCESPRK-GIM-----QVSEF-WSLG-----FSPLPISAISGTG------------------TGELLDLVCSEL 355 (666)
Q Consensus 306 ~ilv~NK~D~~~~-~~~-----~~~~~-~~~~-----~~~i~iSa~~g~G------------------i~eLl~~I~~~l 355 (666)
+++|+||+|+... ... +...+ ...+ .+++++||++|.| +.+|++.|.+.+
T Consensus 131 iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp EEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 8899999998742 111 11122 2234 4689999999987 788888888877
Q ss_pred hh
Q 005979 356 KK 357 (666)
Q Consensus 356 ~~ 357 (666)
+.
T Consensus 211 p~ 212 (405)
T 2c78_A 211 PT 212 (405)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 331
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=3e-15 Score=171.94 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=90.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc-----------ccC------CCcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------~~~------~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
..+|+++|++|+|||||+++|++..... ..+ ..|+|.......+. +.+..++||||||+.++
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccch
Confidence 4689999999999999999999533210 001 12455555555554 36779999999998764
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCC
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~ 499 (666)
. ..+..+++.+|++++|+|+++++..+...+++.+...++|+|+|+||+|+.
T Consensus 88 ~--------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V--------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp H--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred H--------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 2 245668899999999999999999999999999999999999999999987
No 332
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=167.30 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccC--------------------------------CCCcccceeEEEEeecC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD--------------------------------EPGVTRDRMYGRSFWGE 210 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~ 210 (666)
..+|+++|++|+|||||+|+|++....+..+ ..|+|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 3589999999999999999998654221111 13566666666666778
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH
Q 005979 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (666)
Q Consensus 211 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d 290 (666)
..+.+|||||+..+. ......+..+|++|+|+|+..+...+.
T Consensus 104 ~~~~iiDtpGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~g~~~qt 145 (434)
T 1zun_B 104 RKFIIADTPGHEQYT--------------------------------------RNMATGASTCDLAIILVDARYGVQTQT 145 (434)
T ss_dssp EEEEEEECCCSGGGH--------------------------------------HHHHHHHTTCSEEEEEEETTTCSCHHH
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHH
Confidence 899999999986521 233456789999999999999998888
Q ss_pred HHHHHHHHhhcCCC-cEEEEeccCCCCccchh-------hHHHH-HhcC-----CCCeeecccCCCChHHH
Q 005979 291 EEIADWLRKNYMDK-FIILAVNKCESPRKGIM-------QVSEF-WSLG-----FSPLPISAISGTGTGEL 347 (666)
Q Consensus 291 ~~i~~~l~~~~~~~-p~ilv~NK~D~~~~~~~-------~~~~~-~~~~-----~~~i~iSa~~g~Gi~eL 347 (666)
.+.+..+.. .+. |+++|+||+|+...... +...+ ..++ .+++++||++|.|+.++
T Consensus 146 ~~~l~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 146 RRHSYIASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHH--cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 887777765 344 69999999999752111 11122 2355 36899999999999873
No 333
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.63 E-value=4.1e-17 Score=172.50 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=125.2
Q ss_pred CceEEEecCCCCChhHHHHHHhc------cCcccccCCCc-------------------------------------cee
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG------EDRTIVSPISG-------------------------------------TTR 407 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~------~~~~~~~~~~g-------------------------------------tT~ 407 (666)
...++++|.+|+|||||+|.|++ ......+..++ +|+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 45899999999999999999984 22222222221 111
Q ss_pred eeEeEE--EecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh
Q 005979 408 DAIDTE--FTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (666)
Q Consensus 408 d~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~ 485 (666)
+..... +. ..+..+.|+||||+... + ......+|++++|+|+..+...+ .+...+.
T Consensus 135 ~~~e~~~~~~-~~~~~~iliDT~Gi~~~----------~-------~~v~~~~d~vl~v~d~~~~~~~~--~i~~~i~-- 192 (337)
T 2qm8_A 135 KTRETMLLCE-AAGFDVILVETVGVGQS----------E-------TAVADLTDFFLVLMLPGAGDELQ--GIKKGIF-- 192 (337)
T ss_dssp HHHHHHHHHH-HTTCCEEEEEECSSSSC----------H-------HHHHTTSSEEEEEECSCC--------CCTTHH--
T ss_pred HHHHHHHHHh-cCCCCEEEEECCCCCcc----------h-------hhHHhhCCEEEEEEcCCCcccHH--HHHHHHh--
Confidence 111110 11 25778999999998642 1 01347899999999986542111 0111111
Q ss_pred CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC------CCCEEEEeCccCCCHHHHHHHHHHHHHhcc-----cC
Q 005979 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD------WAPIVYSTAIAGQSVDKIIVAAEMVDKERS-----RR 554 (666)
Q Consensus 486 ~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~------~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~-----~~ 554 (666)
..+.++|+||+|+..... ......+.+...+.... ..+++++||++|.|+++|++.|.+...... .+
T Consensus 193 ~~~~ivvlNK~Dl~~~~~--~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~ 270 (337)
T 2qm8_A 193 ELADMIAVNKADDGDGER--RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAG 270 (337)
T ss_dssp HHCSEEEEECCSTTCCHH--HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccEEEEEchhccCchh--HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHH
Confidence 246688889999854321 11222333444443332 468999999999999999999988765321 11
Q ss_pred CCchhHHHHHHHHHHc------cCCCCCCCCcceeEEEeeecCcCCCeEE
Q 005979 555 LSTATINQVVQEAVAF------KSPPRTRGGRRGRVYYCTQAAVRPPTFV 598 (666)
Q Consensus 555 i~t~~ln~~l~~~~~~------~~~p~~~~~k~~ki~y~~q~~~~pp~fv 598 (666)
..+...+.|+.+++.. +++|.. +++..+++|++|....||.+.
T Consensus 271 ~r~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~ 319 (337)
T 2qm8_A 271 KRREQDVKWMWALVHERLHQRLVGSAEV-RQATAEAERAVAGGEHSPAAG 319 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSHHH-HHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHcCCCCHHHH
Confidence 2234455566665554 555542 467889999999999999765
No 334
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=9.2e-16 Score=150.57 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+|+|++.... ..+..++.......+.+++ ..+.+|||||...+.....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 94 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 94 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-----------
Confidence 358999999999999999999987532 2222222222223334444 5789999999865332211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
..+..+|++|+|+|+....+... ..+...++....+.|+++|+||+|+...
T Consensus 95 ---------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 95 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 23578999999999986433332 2344445554457899999999998642
Q ss_pred c---------------hhhHHHHH-hcC-CCCeeeccc-CCCChHHHHHHHHHHh
Q 005979 319 G---------------IMQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~---------------~~~~~~~~-~~~-~~~i~iSa~-~g~Gi~eLl~~I~~~l 355 (666)
. ......+. .++ ..++++||+ +|.|++++++.|.+.+
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 11122232 345 478999999 6899999999988754
No 335
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=2.9e-17 Score=160.68 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
...+|+++|.+|||||||+|+|++... .....+++.+.....+.+++ ..+.+|||||.....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 92 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------------- 92 (204)
Confidence 346899999999999999999997652 23334444444444444444 346699999986422
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~ 317 (666)
......+..+|++++|+|+..+.+..+. .+...+.....+.|+++|+||+|+..
T Consensus 93 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 93 ------------------------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 1222456789999999998776444332 34445544334789999999999865
Q ss_pred cch------------h---hHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHH
Q 005979 318 KGI------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (666)
Q Consensus 318 ~~~------------~---~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~ 354 (666)
... . ....+ ...+. +++++||++|.|+++|++.|.+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 321 0 00111 12345 78999999999999999988654
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=1.5e-15 Score=146.03 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=96.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccC-CCCcccceeEEEEee-----cCeeEEEEecCCcccccCCchhhhhhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~-----~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 237 (666)
.+|+++|.+|||||||+|+|++........ .+.++.+.......+ ....+.+|||||........
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--------- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS---------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh---------
Confidence 579999999999999999999863222222 222233332222222 34679999999986532211
Q ss_pred hhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHH--HHHHHHHHhhcCCCcEEEEeccCCC
Q 005979 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCES 315 (666)
Q Consensus 238 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d--~~i~~~l~~~~~~~p~ilv~NK~D~ 315 (666)
...+..++++++|+|.+.+....+ ..++..+.....+.|+++|+||+|+
T Consensus 74 -----------------------------~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (184)
T 2zej_A 74 -----------------------------PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV 124 (184)
T ss_dssp -----------------------------HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred -----------------------------HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCc
Confidence 134567999999999876521111 1222323333347899999999998
Q ss_pred Cccchhh-----H-HHHH-hcCCC----CeeecccCCC-ChHHHHHHHHHHhhh
Q 005979 316 PRKGIMQ-----V-SEFW-SLGFS----PLPISAISGT-GTGELLDLVCSELKK 357 (666)
Q Consensus 316 ~~~~~~~-----~-~~~~-~~~~~----~i~iSa~~g~-Gi~eLl~~I~~~l~~ 357 (666)
....... . ..+. ..+++ ++++||++|. |+.+|++.|.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 125 SDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 7543211 1 1111 24555 7899999997 999999999887764
No 337
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.62 E-value=5.6e-16 Score=177.23 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=123.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCccc-----------ccCC------CcceeeeEeEEEecCCCceEEEEEcCCCccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSPI------SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------~~~~------~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~ 433 (666)
.++|+|+|+.++|||||..+|+.....+ +.++ .|+|.......+. |++..++|+||||+.+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence 4689999999999999999997322111 1111 1677776666666 48899999999999887
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHH---
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYY--- 510 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~--- 510 (666)
. ..+.++++-+|++|+|+|+.+|+..|...+|+++.+.++|.|+++||+|....+.....+++
T Consensus 81 ~--------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~ 146 (638)
T 3j25_A 81 L--------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEK 146 (638)
T ss_dssp H--------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHT
T ss_pred H--------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHH
Confidence 3 34667899999999999999999999999999999999999999999998643321111111
Q ss_pred -----------------------------------------------------HHHHHHHHhcCCCCCEEEEeCccCCCH
Q 005979 511 -----------------------------------------------------EQDVREKLRALDWAPIVYSTAIAGQSV 537 (666)
Q Consensus 511 -----------------------------------------------------~~~l~~~l~~~~~~~ii~vSAk~g~gv 537 (666)
...+...+......|+++.||++|.||
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv 226 (638)
T 3j25_A 147 LSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGI 226 (638)
T ss_dssp TCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSH
T ss_pred hCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCc
Confidence 111122223344579999999999999
Q ss_pred HHHHHHHHHHHH
Q 005979 538 DKIIVAAEMVDK 549 (666)
Q Consensus 538 ~~L~~~i~~~~~ 549 (666)
+.|++.|...+.
T Consensus 227 ~~LLd~i~~~~p 238 (638)
T 3j25_A 227 DNLIEVITNKFY 238 (638)
T ss_dssp HHHHHHHHHSCC
T ss_pred hhHhhhhhcccc
Confidence 999999987543
No 338
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.62 E-value=1.2e-15 Score=165.12 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=113.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCc----c------c-----ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNR----A------I-----VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~----~------~-----~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 228 (666)
.+|+++|++|+|||||+++|++... . . .....|+|.+.....+...+..+.+|||||+.++
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f---- 79 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---- 79 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH----
Confidence 4799999999999999999987410 0 0 0113567777655555667789999999999652
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005979 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (666)
Q Consensus 229 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~i 307 (666)
.......+..+|++|+|+|+..+...+..+.+..++. .+.| ++
T Consensus 80 ----------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~ii 123 (397)
T 1d2e_A 80 ----------------------------------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVV 123 (397)
T ss_dssp ----------------------------------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEE
T ss_pred ----------------------------------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEE
Confidence 1234466788999999999999999988888877766 4778 68
Q ss_pred EEeccCCCCccc-hh-----hHHHH-HhcC-----CCCeeecccCCCC----------hHHHHHHHHHHhhhh
Q 005979 308 LAVNKCESPRKG-IM-----QVSEF-WSLG-----FSPLPISAISGTG----------TGELLDLVCSELKKV 358 (666)
Q Consensus 308 lv~NK~D~~~~~-~~-----~~~~~-~~~~-----~~~i~iSa~~g~G----------i~eLl~~I~~~l~~~ 358 (666)
+|+||+|+.... .. +..++ ...+ ++++++||++|.| +.+|++.|.+.++..
T Consensus 124 vviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 124 VYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp EEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 999999987421 11 11122 2234 4789999999764 889999998877643
No 339
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=6.3e-17 Score=174.47 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=50.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee---------------------c---CeeEEEEecCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTGG 220 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~i~liDTpG 220 (666)
+|+|+|.||||||||+|+|++.. +.++++|++|++...+...+ + ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 69999999999999999999988 78889999999988876432 2 25799999999
Q ss_pred cccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC
Q 005979 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (666)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~ 285 (666)
+......... +..++...++.+|++++|+|+..+
T Consensus 81 ~~~~a~~~~~-------------------------------l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRG-------------------------------LGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------------------------------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhh-------------------------------HHHHHHHHHhcCCEEEEEEecccc
Confidence 9752211110 112333557899999999999765
No 340
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=1.8e-15 Score=159.10 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee--EEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||++++++.. ....+.+++.+.....+.+++.. +.+|||||........
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 220 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR------------ 220 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHH------------
Confidence 3579999999999999999999765 24455666666666566666655 5599999987543221
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH--HHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~--~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
...+..+|++++|+|+..+.+..+. .+...+.....+.|+++|+||+|+...
T Consensus 221 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 --------------------------PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp --------------------------GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred --------------------------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 1345789999999999865443332 344555554458999999999998543
Q ss_pred ch---------------hhHHHH-HhcCC-CCeeecccCCCChHHHHHHHHHHhh
Q 005979 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. .....+ ...++ +++++||++|.|+++|++.|.+.+.
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 10 111122 23465 7899999999999999999987654
No 341
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=160.44 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=89.3
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcccccCC--------CcceeeeEeEEEecCCCc--eEEEEEcCCCcccccccc
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI--------SGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIAS 438 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~--------~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~ 438 (666)
...++|+++|.+|+|||||+|+|++...+..... ++++.+.....+.. ++. .+.+|||||+.+......
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccHH
Confidence 3457999999999999999999987655433322 23334433333332 343 689999999954321100
Q ss_pred CCchhhHHHHHHHHHHHhhC-------------CeEEEEeec-cccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcch
Q 005979 439 SGSTTEALSVNRAFRAIRRS-------------DVVALVIEA-MACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ 504 (666)
Q Consensus 439 ~~~~~e~~~~~~~~~~i~~a-------------dvvllViDa-~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~ 504 (666)
....+..+...+...+++.+ |+++|+++. ..++...+..+++.+. .++|+|+|+||+|+.....
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHH-
Confidence 00112222223333444433 467777775 5677888877777664 5799999999999975422
Q ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 505 QTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 505 ~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
...+...+.+.+.. .+++++++||++|.| ++.|..+.+.+
T Consensus 192 --v~~~k~~i~~~~~~-~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 192 --RERLKKRILDEIEE-HNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp --HHHHHHHHHHHTTC-C-CCSCCCC----------CHHHHHHH
T ss_pred --HHHHHHHHHHHHHH-CCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 22233444444443 457999999999998 77776665443
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=159.37 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC------cc-------------------------------cccCCC------cce
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED------RT-------------------------------IVSPIS------GTT 406 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~------~~-------------------------------~~~~~~------gtT 406 (666)
..+.|+++|.||||||||+|+|++.. .. .+.+.+ |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 35789999999999999999999621 11 111122 233
Q ss_pred eeeEeEEEe-cCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh
Q 005979 407 RDAIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (666)
Q Consensus 407 ~d~~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~ 485 (666)
++....... ...+..+.|+||||+... + ......+|++++|+|++.+...+... ..+ .
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~-------~~l~~~~d~vl~V~d~~~~~~~~~i~--~~i--l 211 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS----------E-------FAVADMVDMFVLLLPPAGGDELQGIK--RGI--I 211 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C----------H-------HHHHTTCSEEEEEECCC----------------C
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh----------h-------hhHHhhCCEEEEEEcCCcchhHHHhH--HHH--H
Confidence 332211110 025678999999997531 1 12357899999999998763222211 111 3
Q ss_pred CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhc------CCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA------LDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 486 ~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~------~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..|.++|+||+|+.+... .......+...+.. ....+++++||++|.|+++|++.|.+....
T Consensus 212 ~~~~ivVlNK~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSCSEEEECCCSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 578999999999853211 11112223332222 124679999999999999999999887643
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-14 Score=140.14 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=85.6
Q ss_pred cCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCccc--ccCCCcceeeeEeEEEec
Q 005979 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTG 416 (666)
Q Consensus 339 ~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~--~~~~~gtT~d~~~~~~~~ 416 (666)
.....+..+.+.+.+.+..... ......++|+++|.+|||||||+|+|++..... ....++++.+.
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~------- 88 (193)
T 2ged_A 21 INKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------- 88 (193)
T ss_dssp TTTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------
Confidence 3445677888877766654321 122456899999999999999999999765221 22333343322
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc-ccCCHHHH-HHHHHHHH-------hCC
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM-ACITEQDC-RIAERIEQ-------EGK 487 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~-~~~t~~d~-~i~~~i~~-------~~~ 487 (666)
.+..+.+|||||+.++.... .. .....+..+|++|+|+|++ +..+.... .++..+.. .++
T Consensus 89 -~~~~~~l~Dt~G~~~~~~~~------~~----~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2ged_A 89 -DGSGVTLVDFPGHVKLRYKL------SD----YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157 (193)
T ss_dssp -CCTTCSEEEETTCCBSSCCH------HH----HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred -cCCeEEEEECCCCchHHHHH------HH----HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCC
Confidence 45688999999997754321 11 1122345599999999998 43222221 23333322 379
Q ss_pred cEEEEEecccCCCCcc
Q 005979 488 GCLIVVNKWDTIPNKN 503 (666)
Q Consensus 488 pvIlv~NK~Dl~~~~~ 503 (666)
|+++|+||+|+.....
T Consensus 158 p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 158 DILIACNKSELFTARP 173 (193)
T ss_dssp CEEEEEECTTSTTCCC
T ss_pred CEEEEEEchHhcCCCC
Confidence 9999999999976543
No 344
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.57 E-value=1.5e-14 Score=161.40 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=87.1
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccc---------------c------cCCCCcccceeEEEEeecCeeEEEEecCCcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAI---------------V------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 222 (666)
.+|+|+|++|+|||||+++|++....+ + ....|+|.......+.+.+..+.||||||+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 579999999999999999998642111 1 1244566666666778889999999999996
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC
Q 005979 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (666)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~ 302 (666)
++. ..+.+++..+|++|+|+|+..+...+...+++.+.. .
T Consensus 94 df~--------------------------------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~ 133 (529)
T 2h5e_A 94 DFS--------------------------------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--R 133 (529)
T ss_dssp TCC--------------------------------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--T
T ss_pred hHH--------------------------------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--c
Confidence 532 234467789999999999999999888888887765 5
Q ss_pred CCcEEEEeccCCCCcc
Q 005979 303 DKFIILAVNKCESPRK 318 (666)
Q Consensus 303 ~~p~ilv~NK~D~~~~ 318 (666)
+.|+++|+||+|+...
T Consensus 134 ~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 134 DTPILTFMNKLDRDIR 149 (529)
T ss_dssp TCCEEEEEECTTSCCS
T ss_pred CCCEEEEEcCcCCccc
Confidence 8899999999998653
No 345
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.57 E-value=1.7e-14 Score=147.88 Aligned_cols=125 Identities=13% Similarity=0.153 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
.++|+++|.+|+|||||+|+|++.....+++.+++|.+.........+..+.+|||||+..+......+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~---------- 108 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMAL---------- 108 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHH----------
Confidence 4689999999999999999999988777888899998888887888899999999999987433222111
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHH--HHhccEEEEEecCCC-CCCHHHHHHHHHHHhhcCC---CcEEEEeccCCCC
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQA-GLTAADEEIADWLRKNYMD---KFIILAVNKCESP 316 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~--i~~ad~il~VvD~~~-~~~~~d~~i~~~l~~~~~~---~p~ilv~NK~D~~ 316 (666)
+.+.+. ...+|++|||+|... .++..+..+++.+...+.. +|+++|+||+|+.
T Consensus 109 ---------------------~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 109 ---------------------NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred ---------------------HHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 111122 236999999977643 5777777777777653222 6999999999986
Q ss_pred cc
Q 005979 317 RK 318 (666)
Q Consensus 317 ~~ 318 (666)
..
T Consensus 168 ~~ 169 (270)
T 1h65_A 168 PP 169 (270)
T ss_dssp CG
T ss_pred Cc
Confidence 54
No 346
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.4e-14 Score=153.94 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=95.9
Q ss_pred hhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHH
Q 005979 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 367 ~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
.+....+|+++|.||||||||+|+|++.. ..++++|+||++++...+.+ ++.+++|+||||+.+... ....
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~-------~~~~ 138 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAK-------DGRG 138 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC------------C
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCch-------hhhH
Confidence 34455689999999999999999999875 67899999999999998886 888999999999976322 2333
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHh-----CCcEEEEEecccCC
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTI 499 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~-----~~pvIlv~NK~Dl~ 499 (666)
...+++..++.||++++|+|++++. .+.. +...+... .+|.++++||+|..
T Consensus 139 ~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 139 RGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4567888999999999999999863 3333 33445443 57889999999963
No 347
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=2.2e-14 Score=146.31 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
..+|+++|++|+|||||+|+|++...+.+..++++|.+.......+++..+.||||||+.++......+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~---------- 105 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQAL---------- 105 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHH----------
Confidence 4689999999999999999999998777888999999998888889999999999999987543332211
Q ss_pred CCCCchhhHHHHHhccHHHHHHHHHHHH--HhccEEEEEecCCC-CCCHHHHHHHHHHHhhcC---CCcEEEEeccCCCC
Q 005979 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (666)
Q Consensus 243 ~~G~~~~~~~~~~~~~~~~i~~~~~~~i--~~ad~il~VvD~~~-~~~~~d~~i~~~l~~~~~---~~p~ilv~NK~D~~ 316 (666)
+.+.+.+ ..+|++|||++... .++..+..+++.++.... .+|+++|+||+|+.
T Consensus 106 ---------------------~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 106 ---------------------ELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 1111222 36899999977643 467777778877766322 25899999999986
Q ss_pred c
Q 005979 317 R 317 (666)
Q Consensus 317 ~ 317 (666)
.
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 348
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=1.3e-14 Score=167.28 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-----------ccC------CCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+|++|+|||||+|+|++....+ +.+ .+++|.......+.+.+..+.||||||+.++.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 4689999999999999999998421111 111 35777777777888899999999999997522
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
..+.+++..+|++|+|+|+..+.+.++..++..+.. .+.|
T Consensus 90 --------------------------------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p 129 (693)
T 2xex_A 90 --------------------------------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVP 129 (693)
T ss_dssp --------------------------------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCC
T ss_pred --------------------------------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCC
Confidence 234567888999999999999999998888888776 4899
Q ss_pred EEEEeccCCCCcc
Q 005979 306 IILAVNKCESPRK 318 (666)
Q Consensus 306 ~ilv~NK~D~~~~ 318 (666)
+++|+||+|+...
T Consensus 130 ~ilviNK~Dl~~~ 142 (693)
T 2xex_A 130 RIVFVNKMDKLGA 142 (693)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEECCCcccc
Confidence 9999999998753
No 349
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.56 E-value=1.8e-14 Score=161.58 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=90.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCc---------------------ccccCCCCcccceeEEEEeecCeeEEEEecCCccc
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNR---------------------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~---------------------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 223 (666)
+|+|+||.++|||||..+|+-... -......|+|.......+.|++..|.||||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 699999999999999999962211 11123347777777888899999999999999988
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC
Q 005979 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (666)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~ 303 (666)
|. ..+.++++-+|.+|+|+|+..|+..+...+++.+.+ .+
T Consensus 113 F~--------------------------------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~ 152 (548)
T 3vqt_A 113 FS--------------------------------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RA 152 (548)
T ss_dssp CS--------------------------------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TT
T ss_pred HH--------------------------------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hC
Confidence 54 345688899999999999999999999999999888 58
Q ss_pred CcEEEEeccCCCCc
Q 005979 304 KFIILAVNKCESPR 317 (666)
Q Consensus 304 ~p~ilv~NK~D~~~ 317 (666)
.|.++++||+|+..
T Consensus 153 lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 153 TPVMTFVNKMDREA 166 (548)
T ss_dssp CCEEEEEECTTSCC
T ss_pred CceEEEEecccchh
Confidence 99999999999864
No 350
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=2.9e-15 Score=172.76 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCc--------------ccceeE-------------------------
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV--------------TRDRMY------------------------- 203 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~--------------t~~~~~------------------------- 203 (666)
.++|+++|.+|+|||||+|+|+|.....++..|++ |++...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 56899999999999999999999987777777766 221100
Q ss_pred --------------EEEeecC----eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHH
Q 005979 204 --------------GRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQ 265 (666)
Q Consensus 204 --------------~~~~~~~----~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 265 (666)
..+.+.. ..+.||||||+..... ....
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----------------------------------~~~~ 193 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----------------------------------RNEL 193 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----------------------------------CHHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----------------------------------HHHH
Confidence 0000000 4699999999975221 0134
Q ss_pred HHHHHHhccEEEEEecCCCCCCHHHHHHHH-HHHhhcCCCcEEEEeccCCCCccc---hh----------hHHH-----H
Q 005979 266 ATAAIEESCVIIFLVDGQAGLTAADEEIAD-WLRKNYMDKFIILAVNKCESPRKG---IM----------QVSE-----F 326 (666)
Q Consensus 266 ~~~~i~~ad~il~VvD~~~~~~~~d~~i~~-~l~~~~~~~p~ilv~NK~D~~~~~---~~----------~~~~-----~ 326 (666)
+..++..+|++|||+|+..+.+..+...+. .+.. .++|+++|+||+|+.... .. .... .
T Consensus 194 ~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l 271 (695)
T 2j69_A 194 SLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL 271 (695)
T ss_dssp HTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 557788999999999999988887765543 4443 477899999999986542 00 0100 1
Q ss_pred Hh-cC--------CCCeeeccc--------------CCCChHHHHHHHHHHhhh
Q 005979 327 WS-LG--------FSPLPISAI--------------SGTGTGELLDLVCSELKK 357 (666)
Q Consensus 327 ~~-~~--------~~~i~iSa~--------------~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .+ ..+++|||+ +|.|+++|++.|.+.+..
T Consensus 272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 11 11 267999999 999999999999887754
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=3.2e-14 Score=139.43 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCC-cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
..+|+++|++|||||||+|+|+|.. ...+.+.+|+|.... ...+++ .+.++||||+........ ..+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~-~~~-------- 93 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEE-MKR-------- 93 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------C-CHH--------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHH-HHH--------
Confidence 4589999999999999999999876 345567778777543 233444 788999999864211100 000
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~ 321 (666)
.+...+ ..+......++.+++|+|+..+....+..+..++.. .+.|+++|.||+|+......
T Consensus 94 ---------------~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 94 ---------------KWQRAL-GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp ---------------HHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHH
T ss_pred ---------------HHHHHH-HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhH
Confidence 000011 111222356899999999998887777677777765 57899999999998764321
Q ss_pred h-----HHHHH-hcC--CCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 322 Q-----VSEFW-SLG--FSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 322 ~-----~~~~~-~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
+ ...+. ..+ +..+++||+++.|+.++++.|.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 1 11121 222 356899999999999999999887654
No 352
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.56 E-value=2.1e-15 Score=166.07 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=102.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcc------------------------ccc------CCCCcccceeEEEEeecCeeE
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRA------------------------IVV------DEPGVTRDRMYGRSFWGEHEF 213 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~------------------------~~~------~~~~~t~~~~~~~~~~~~~~i 213 (666)
.+|+++|++|+|||||+|+|++.... .+. ...|+|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 57999999999999999999864100 011 136788888877778888999
Q ss_pred EEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH-----
Q 005979 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA----- 288 (666)
Q Consensus 214 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~----- 288 (666)
.+|||||+..+ ...+..++..+|++|+|+|+..+..+
T Consensus 88 ~iiDtPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~ 129 (458)
T 1f60_A 88 TVIDAPGHRDF--------------------------------------IKNMITGTSQADCAILIIAGGVGEFEAGISK 129 (458)
T ss_dssp EEEECCCCTTH--------------------------------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCT
T ss_pred EEEECCCcHHH--------------------------------------HHHHHhhhhhCCEEEEEEeCCcCccccccCc
Confidence 99999998641 23345667899999999999876443
Q ss_pred --HHHHHHHHHHhhcCCCc-EEEEeccCCCCc--cch-h----hHHHH-HhcC-----CCCeeecccCCCChHHH
Q 005979 289 --ADEEIADWLRKNYMDKF-IILAVNKCESPR--KGI-M----QVSEF-WSLG-----FSPLPISAISGTGTGEL 347 (666)
Q Consensus 289 --~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~--~~~-~----~~~~~-~~~~-----~~~i~iSa~~g~Gi~eL 347 (666)
++.+.+..+.. .+.| +++|+||+|+.. ... . +...+ ..++ .+++++||++|.|+.++
T Consensus 130 ~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 130 DGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred chhHHHHHHHHHH--cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 56666655554 4555 999999999873 111 1 11111 2234 47899999999998754
No 353
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=1.1e-14 Score=163.83 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=97.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEE------EEee----cCeeEEEEecCCcccccCCchhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG------RSFW----GEHEFMLVDTGGVLNVSKSQPNIM 232 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~------~~~~----~~~~i~liDTpG~~~~~~~~~~~~ 232 (666)
..+|+++|.+|||||||+|+|++.... ....+.+..+.... .+.+ .+..+.+|||||.........
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--- 116 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--- 116 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH---
Confidence 468999999999999999999987632 11111111111111 1111 247899999999765332211
Q ss_pred hhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEecc
Q 005979 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (666)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK 312 (666)
..+..+|++|+|+|++.. .....+...+.....+.|+++|+||
T Consensus 117 -----------------------------------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 117 -----------------------------------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp -----------------------------------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECC
T ss_pred -----------------------------------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEEC
Confidence 345679999999999754 3334566666665457999999999
Q ss_pred CCCCccchhh---HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 313 CESPRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 313 ~D~~~~~~~~---~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
+|+....... ...+ ...+.+++++||++|.|+++|++.|.+.+...
T Consensus 160 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 160 IDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp TTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred CCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 9987543211 1222 23566799999999999999999999887643
No 354
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=1.5e-14 Score=165.74 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCccc------------------------------------------
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR------------------------------------------ 199 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~------------------------------------------ 199 (666)
..|+|+++|.+|+|||||+|+|+|......+.. .+|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 478999999999999999999999864222221 2222
Q ss_pred ---------ceeEEEEee-cCeeEEEEecCCcccccC--CchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHH
Q 005979 200 ---------DRMYGRSFW-GEHEFMLVDTGGVLNVSK--SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (666)
Q Consensus 200 ---------~~~~~~~~~-~~~~i~liDTpG~~~~~~--~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~ 267 (666)
+.....+.. +..++.||||||+..... .+.++. ..+.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~---------------------------~~i~~lv~ 181 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE---------------------------FQIRDMLM 181 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHH---------------------------HHHHHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHH---------------------------HHHHHHHH
Confidence 111111111 234689999999976321 111111 11223333
Q ss_pred HHH-HhccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccchhhH--HH--HH--hcCC-CCeeecc
Q 005979 268 AAI-EESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV--SE--FW--SLGF-SPLPISA 338 (666)
Q Consensus 268 ~~i-~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~--~~--~~--~~~~-~~i~iSa 338 (666)
.++ ..+|++|+|+|++.++...+. .+++.+.. .++|+++|+||+|+........ .. .+ .+++ .++++||
T Consensus 182 ~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA 259 (772)
T 3zvr_A 182 QFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 259 (772)
T ss_dssp HHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCC
T ss_pred HHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecc
Confidence 344 579999999999998887776 78888876 5799999999999976432111 11 11 1244 6899999
Q ss_pred cCCCChHHHHHHHHH
Q 005979 339 ISGTGTGELLDLVCS 353 (666)
Q Consensus 339 ~~g~Gi~eLl~~I~~ 353 (666)
.+|.|+++|++.|.+
T Consensus 260 ~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 260 KDIDGKKDITAALAA 274 (772)
T ss_dssp EESSSSEEHHHHHHH
T ss_pred cccccchhHHHHHHH
Confidence 999999999999876
No 355
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.55 E-value=9.7e-15 Score=171.54 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc----c-----------cccCCCCcccceeEEEEeecCeeEEEEecCCcccccCC
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR----A-----------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~----~-----------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 227 (666)
..+|+++|++|+|||||+++|++... . ......|+|.+.....+...+..+.+|||||+.++
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF--- 372 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY--- 372 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH---
Confidence 35899999999999999999987410 0 01234577777655555667789999999999752
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005979 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (666)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p-~ 306 (666)
.......+..+|++|+|+|+..+..+++.+.+..++. .+.| +
T Consensus 373 -----------------------------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~I 415 (1289)
T 3avx_A 373 -----------------------------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYI 415 (1289)
T ss_dssp -----------------------------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCE
T ss_pred -----------------------------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeE
Confidence 1334466788999999999999988888888777766 3678 7
Q ss_pred EEEeccCCCCccch-h-----hHHHH-HhcC-----CCCeeecccCC--------CChHHHHHHHHHHhhh
Q 005979 307 ILAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISG--------TGTGELLDLVCSELKK 357 (666)
Q Consensus 307 ilv~NK~D~~~~~~-~-----~~~~~-~~~~-----~~~i~iSa~~g--------~Gi~eLl~~I~~~l~~ 357 (666)
|+|+||+|+..... . +...+ ...+ ++++++||++| .|+.+|++.|...++.
T Consensus 416 IVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp EEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred EEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 89999999975221 1 11122 2334 47899999999 4688999999887764
No 356
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=2.9e-14 Score=153.99 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=114.3
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (666)
...|+++|.+|||||||+|+|++.. ..+..++.+|..+....+...+...+.++||||+.+..... ..+ ...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~---~~L----~~~ 228 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG---KGL----GLE 228 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS---CCS----CHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh---hhh----hHH
Confidence 3579999999999999999999875 35677888888777666665334789999999986532111 011 112
Q ss_pred HHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHH-----hCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005979 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (666)
Q Consensus 451 ~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~-----~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (666)
..+.+..++.+|+|+|++ .....++. +.+++.. ..+|.|+|+||+|+... .. ...+.+.+.. .+.
T Consensus 229 fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~----~~~l~~~l~~-~g~ 299 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EA----VKALADALAR-EGL 299 (416)
T ss_dssp HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HH----HHHHHHHHHT-TTS
T ss_pred HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HH----HHHHHHHHHh-cCC
Confidence 345678899999999997 22233332 3333333 26899999999998642 11 2233333332 356
Q ss_pred CEEEEeCccCCCHHHHHHHHHHHHHhc
Q 005979 525 PIVYSTAIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 525 ~ii~vSAk~g~gv~~L~~~i~~~~~~~ 551 (666)
+++++||+++.|+++|++.|.+.+...
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 899999999999999999999877653
No 357
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=3.2e-14 Score=163.99 Aligned_cols=116 Identities=20% Similarity=0.279 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc-----c------ccC------CCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----I------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~-----~------~~~------~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+|++|+|||||+|+|+..... . +.+ ..++|.......+.+.+..+.||||||+.++
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF- 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch-
Confidence 458999999999999999999832100 0 111 4467777777778888999999999999652
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
...+.+++..+|++|+|+|+..+...++..++..+.. .+.|
T Consensus 91 -------------------------------------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p 131 (691)
T 1dar_A 91 -------------------------------------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVP 131 (691)
T ss_dssp -------------------------------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCC
T ss_pred -------------------------------------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCC
Confidence 1345577889999999999999999988888877776 5899
Q ss_pred EEEEeccCCCCcc
Q 005979 306 IILAVNKCESPRK 318 (666)
Q Consensus 306 ~ilv~NK~D~~~~ 318 (666)
+++|+||+|+...
T Consensus 132 ~ivviNKiD~~~~ 144 (691)
T 1dar_A 132 RIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEECCCcccC
Confidence 9999999998653
No 358
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.55 E-value=9.1e-15 Score=155.84 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=97.3
Q ss_pred CCceEEEecCCCCChhHHHHHHhcc------CcccccCCCccee------------------------------------
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIVSPISGTTR------------------------------------ 407 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~------~~~~~~~~~gtT~------------------------------------ 407 (666)
..++|+++|.||+|||||+++|... ....+...++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 3578999999999999999999732 1111211111111
Q ss_pred ----eeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHH
Q 005979 408 ----DAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (666)
Q Consensus 408 ----d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~ 483 (666)
+.+ ..+. ..+..+.||||||+... ....+..+|++|+|+|+..+...+.. ...+
T Consensus 158 ~~t~d~i-~~~~-~~~~~~iiiDTpGi~~~-----------------~~~~~~~aD~vl~V~d~~~~~~~~~l--~~~~- 215 (355)
T 3p32_A 158 RATRETV-VLLE-AAGFDVILIETVGVGQS-----------------EVAVANMVDTFVLLTLARTGDQLQGI--KKGV- 215 (355)
T ss_dssp HHHHHHH-HHHH-HTTCCEEEEEECSCSSH-----------------HHHHHTTCSEEEEEEESSTTCTTTTC--CTTS-
T ss_pred HHHHHHH-HHHh-hCCCCEEEEeCCCCCcH-----------------HHHHHHhCCEEEEEECCCCCccHHHH--HHhH-
Confidence 000 0011 24678999999997431 11245899999999998765322211 1111
Q ss_pred HhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcC-----C-CCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 484 QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-----D-WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 484 ~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~-----~-~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..+|+++|+||+|+.... ........+...+... . ..|++++||++|.|+++|++.|.+....
T Consensus 216 -~~~p~ivVlNK~Dl~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 -LELADIVVVNKADGEHHK---EARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -GGGCSEEEEECCCGGGHH---HHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -hhcCCEEEEECCCCcChh---HHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 246999999999985421 1222333444443222 2 4789999999999999999999887654
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=154.80 Aligned_cols=150 Identities=22% Similarity=0.211 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcC------CcccccCCC-------------------------------------Cc
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEP-------------------------------------GV 197 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~------~~~~~~~~~-------------------------------------~~ 197 (666)
...++|+|+|+||||||||+|+|++. +.+++...| |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 44679999999999999999999862 222222211 22
Q ss_pred ccceeEEEE--eecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccE
Q 005979 198 TRDRMYGRS--FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCV 275 (666)
Q Consensus 198 t~~~~~~~~--~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~ 275 (666)
|++...... ...+..+.++||||+... . ......+|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~----~-------------------------------------~~l~~~~d~ 190 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS----E-------------------------------------FAVADMVDM 190 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C----H-------------------------------------HHHHTTCSE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh----h-------------------------------------hhHHhhCCE
Confidence 322211111 236778999999998531 0 022468999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh--hHHHHH---h--------cCCCCeeecccCCC
Q 005979 276 IIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSEFW---S--------LGFSPLPISAISGT 342 (666)
Q Consensus 276 il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~--~~~~~~---~--------~~~~~i~iSa~~g~ 342 (666)
+++|+|+..+...+ .+...+ ...|.++|+||+|+...... ....+. . ...+++++||++|.
T Consensus 191 vl~V~d~~~~~~~~--~i~~~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~ 264 (349)
T 2www_A 191 FVLLLPPAGGDELQ--GIKRGI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGE 264 (349)
T ss_dssp EEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCT
T ss_pred EEEEEcCCcchhHH--HhHHHH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCC
Confidence 99999987653211 111111 35688999999998653211 111111 1 12356899999999
Q ss_pred ChHHHHHHHHHHhhh
Q 005979 343 GTGELLDLVCSELKK 357 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~ 357 (666)
|+++|++.|.+.++.
T Consensus 265 Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 265 GISEMWDKMKDFQDL 279 (349)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
No 360
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.54 E-value=6.1e-14 Score=136.49 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
.+|+++|.+|||||||+++|++.... ....+.++.+...+.+.++|. .+.+|||||........
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~------------- 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT------------- 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC-------------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh-------------
Confidence 57999999999999999999997632 233344555666667778775 56789999986532211
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCccc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~~ 319 (666)
...+..++++++|+|.....+.... .+...+... ..+.|+++|+||+|+....
T Consensus 72 -------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 126 (199)
T 2f9l_A 72 -------------------------SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126 (199)
T ss_dssp -------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred -------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 1345678999999998754332221 223333322 2468999999999986532
Q ss_pred h---hhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. .....+ ...++.++.+||+++.|+.++++.|.+.+..
T Consensus 127 ~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 122222 2456678889999999999999999887754
No 361
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=6.7e-15 Score=161.17 Aligned_cols=144 Identities=25% Similarity=0.298 Sum_probs=96.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc------------------------------ccCCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++|++|+|||||+++|++....+ .....|+|.+.....+.+.+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 3589999999999999999998641111 0114678888877777888899
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCC-------
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~------- 285 (666)
+.+|||||+.++ ...+..++..+|++|+|+|+..+
T Consensus 86 ~~iiDtpG~~~f--------------------------------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~ 127 (435)
T 1jny_A 86 FTIIDAPGHRDF--------------------------------------VKNMITGASQADAAILVVSAKKGEYEAGMS 127 (435)
T ss_dssp EEECCCSSSTTH--------------------------------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHS
T ss_pred EEEEECCCcHHH--------------------------------------HHHHHhhhhhcCEEEEEEECCCCccccccc
Confidence 999999998752 13344667889999999999987
Q ss_pred CCHHHHHHHHHHHhhcCC-CcEEEEeccCCCCccc----h-----hhHHHH-HhcC-----CCCeeecccCCCChHH
Q 005979 286 LTAADEEIADWLRKNYMD-KFIILAVNKCESPRKG----I-----MQVSEF-WSLG-----FSPLPISAISGTGTGE 346 (666)
Q Consensus 286 ~~~~d~~i~~~l~~~~~~-~p~ilv~NK~D~~~~~----~-----~~~~~~-~~~~-----~~~i~iSa~~g~Gi~e 346 (666)
...+..+.+..+.. .+ .|+++|+||+|+.... . .+...+ ...+ .+++++||++|.|+.+
T Consensus 128 ~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 128 VEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cchHHHHHHHHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 55667777766665 34 4689999999987621 1 111122 2234 3589999999999974
No 362
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=1.4e-14 Score=154.22 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=104.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcc-----cccCCCC----------------------cccce-----------e-
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDR-----------M- 202 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~-----~~~~~~~----------------------~t~~~-----------~- 202 (666)
..|+|+++|.+|||||||+|+|+|.+.. .+...|+ +|.+. .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998754 3344444 22220 0
Q ss_pred -----------EEEEe-ecCeeEEEEecCCcccccCC--chhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHH
Q 005979 203 -----------YGRSF-WGEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA 268 (666)
Q Consensus 203 -----------~~~~~-~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~ 268 (666)
.-.+. ..+..+.||||||+...... ... +...+...+..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 162 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD---------------------------IEFQIRDMLMQ 162 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTT---------------------------HHHHHHHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchh---------------------------HHHHHHHHHHH
Confidence 00011 12467999999999753211 111 11122334445
Q ss_pred HHH-hccEEEEEecCCCCCCHHHH-HHHHHHHhhcCCCcEEEEeccCCCCccch--hhHHHH--H--hcCC-CCeeeccc
Q 005979 269 AIE-ESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--W--SLGF-SPLPISAI 339 (666)
Q Consensus 269 ~i~-~ad~il~VvD~~~~~~~~d~-~i~~~l~~~~~~~p~ilv~NK~D~~~~~~--~~~~~~--~--~~~~-~~i~iSa~ 339 (666)
++. .++++|+|+|+..++...+. .+++.+.. .+.|+++|+||+|+..... ...... . .+++ .++++||.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~ 240 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcc
Confidence 553 45678888888877766654 36666654 4789999999999875432 111110 1 1243 57899999
Q ss_pred CCCChHHHHHHHHH
Q 005979 340 SGTGTGELLDLVCS 353 (666)
Q Consensus 340 ~g~Gi~eLl~~I~~ 353 (666)
+|.|+.+|++.+.+
T Consensus 241 ~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 241 DIDGKKDITAALAA 254 (353)
T ss_dssp HHHTTCCHHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 99999999998876
No 363
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=6.9e-14 Score=162.03 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=88.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCccc-----------------ccCCCcceeeeEeEEEecC------CCceEEEEE
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------------VSPISGTTRDAIDTEFTGP------EGQKFRLID 426 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~-----------------~~~~~gtT~d~~~~~~~~~------~~~~~~liD 426 (666)
+.++|+|+|+..+|||||..+|+.....+ .....|+|.......+.+. ++..++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 35689999999999999999998322110 1112366665555555432 246899999
Q ss_pred cCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 427 TpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
|||+.+|. ..+.++++-+|++|+|+|+.+|+..|...+|+++.+.++|.|+++||+|...
T Consensus 92 TPGHvDF~--------------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFT--------------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCH--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred CCCCcccH--------------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 99999873 3466789999999999999999999999999999999999999999999854
No 364
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.53 E-value=7.9e-14 Score=160.92 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCccc-----------ccC------CCCcccceeEEEEeecC-------eeEEEEe
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VVD------EPGVTRDRMYGRSFWGE-------HEFMLVD 217 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~i~liD 217 (666)
...+|+|+|++|+|||||+++|+...... +.+ ..++|.......+.|.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 35689999999999999999997532111 111 34566666666667776 8899999
Q ss_pred cCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHH
Q 005979 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (666)
Q Consensus 218 TpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l 297 (666)
|||+.++. ..+.+++..+|++|+|+|+..+...+...+++.+
T Consensus 89 TPG~~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~ 130 (704)
T 2rdo_7 89 TPGHVDFT--------------------------------------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130 (704)
T ss_pred CCCccchH--------------------------------------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH
Confidence 99997521 3345678899999999999999888888887777
Q ss_pred HhhcCCCcEEEEeccCCCCc
Q 005979 298 RKNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 298 ~~~~~~~p~ilv~NK~D~~~ 317 (666)
.. .+.|+++|+||+|+..
T Consensus 131 ~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 131 NK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HH--cCCCEEEEEeCCCccc
Confidence 65 4889999999999864
No 365
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.53 E-value=1.1e-14 Score=171.37 Aligned_cols=153 Identities=17% Similarity=0.234 Sum_probs=106.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccC---------------CCcceeeeEeEEEecC---------------CCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP---------------ISGTTRDAIDTEFTGP---------------EGQ 420 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~---------------~~gtT~d~~~~~~~~~---------------~~~ 420 (666)
.++|+++|++|+|||||+|+|++........ ..|+|.......+.+. .+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4799999999999999999999653322221 2344443332222221 155
Q ss_pred eEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC
Q 005979 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (666)
Q Consensus 421 ~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~ 500 (666)
.++||||||+.+|.. .+.++++.+|++|+|+|++++.+.++..++..+...++|+|+|+||+|+..
T Consensus 99 ~i~liDTPG~~df~~--------------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS--------------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCCSSCH--------------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred eEEEEECcCchhhHH--------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 899999999988632 245688999999999999999999999988888888999999999999852
Q ss_pred Cc----c---hhhHHHHHHHHHHHHhc--------CCC----CCEEEEeCccCCCH
Q 005979 501 NK----N---QQTATYYEQDVREKLRA--------LDW----APIVYSTAIAGQSV 537 (666)
Q Consensus 501 ~~----~---~~~~~~~~~~l~~~l~~--------~~~----~~ii~vSAk~g~gv 537 (666)
.. . ........+.++..+.. ... .++.+.||++|+|+
T Consensus 165 ~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 165 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 11 0 11223334445554431 112 25888999998763
No 366
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=151.52 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=87.3
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCC--------CCcccceeEEEEeecCe--eEEEEecCCcccccCCchhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDE--------PGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIME 233 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 233 (666)
++|+++|.+|+|||||+|+|++......... ++++.+.....+...+. .+.+|||||+.+......
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e---- 113 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD---- 113 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH----
Confidence 5799999999999999999988753322211 22222222222333443 689999999965322111
Q ss_pred hhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhc-------------cEEEEEecC-CCCCCHHHHHHHHHHHh
Q 005979 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEES-------------CVIIFLVDG-QAGLTAADEEIADWLRK 299 (666)
Q Consensus 234 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~a-------------d~il~VvD~-~~~~~~~d~~i~~~l~~ 299 (666)
....+..+|..++..++..+ |+++|+++. .+++...+..+.+.+.
T Consensus 114 --------------------~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~- 172 (361)
T 2qag_A 114 --------------------CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH- 172 (361)
T ss_dssp ----------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-
Confidence 11234455556655655543 467888875 6788888877776664
Q ss_pred hcCCCcEEEEeccCCCCccchhhH-----HHH-HhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 300 NYMDKFIILAVNKCESPRKGIMQV-----SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 300 ~~~~~p~ilv~NK~D~~~~~~~~~-----~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.+.|+|+|+||+|+........ ..+ ...+++++++||.+|.| ++.+..+.+.+.
T Consensus 173 --~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 173 --NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp --S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred --cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 4789999999999986432211 111 23467899999999998 666666655543
No 367
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.52 E-value=9.7e-15 Score=161.15 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc------------------------ccc------CCCCcccceeEEEEeecCee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA------------------------IVV------DEPGVTRDRMYGRSFWGEHE 212 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~------------------------~~~------~~~~~t~~~~~~~~~~~~~~ 212 (666)
..+|+++|++|+|||||+++|++.... .+. ...|+|.+.....+.+++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 468999999999999999999742211 011 13577877777677788899
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC------
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------ 286 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~------ 286 (666)
+.+|||||+..+. ......+..+|++|+|+|+..+.
T Consensus 123 ~~iiDtPGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~ 164 (467)
T 1r5b_A 123 FSLLDAPGHKGYV--------------------------------------TNMINGASQADIGVLVISARRGEFEAGFE 164 (467)
T ss_dssp EEECCCCC-------------------------------------------------TTSCSEEEEEEECSTTHHHHTTS
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHhhcccCCEEEEEEeCCcCccccccC
Confidence 9999999997532 22345678899999999999874
Q ss_pred -CHHHHHHHHHHHhhcCCCc-EEEEeccCCCCccc----h-h----hHHHHH-hc-CC------CCeeecccCCCChHHH
Q 005979 287 -TAADEEIADWLRKNYMDKF-IILAVNKCESPRKG----I-M----QVSEFW-SL-GF------SPLPISAISGTGTGEL 347 (666)
Q Consensus 287 -~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~----~-~----~~~~~~-~~-~~------~~i~iSa~~g~Gi~eL 347 (666)
..+..+.+..+.. .+.| +++|+||+|+.... . . +...+. .. |+ +++++||++|.|+.++
T Consensus 165 ~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 165 RGGQTREHAVLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred CCCcHHHHHHHHHH--cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 2455566665554 4677 99999999995411 0 0 112222 23 43 4899999999999875
Q ss_pred H
Q 005979 348 L 348 (666)
Q Consensus 348 l 348 (666)
+
T Consensus 243 ~ 243 (467)
T 1r5b_A 243 V 243 (467)
T ss_dssp C
T ss_pred c
Confidence 4
No 368
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=4e-14 Score=149.67 Aligned_cols=90 Identities=26% Similarity=0.316 Sum_probs=65.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC----------------CceEEEEEcCCCccccc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRKRAA 435 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~----------------~~~~~liDTpG~~~~~~ 435 (666)
.+|+++|.||||||||+|+|++.. +.++++|++|+++....+...+ +..+.+|||||+.++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 689999999999999999999876 6788999999988776666532 14799999999986532
Q ss_pred cccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc
Q 005979 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (666)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~ 469 (666)
. ......+.+.+++.+|++++|+|+++
T Consensus 82 ~-------~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K-------GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H-------HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c-------cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 11112334568899999999999975
No 369
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=1.2e-13 Score=149.28 Aligned_cols=164 Identities=20% Similarity=0.317 Sum_probs=115.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (666)
...|+|+|++|||||||+|+|++.. ..+.+++++|.....+.+.+.+ ..+.++||||+........
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~------------ 223 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------------ 223 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh------------
Confidence 3679999999999999999999986 4667889999888888888876 8899999999964211000
Q ss_pred cCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh---cCCCcEEEEeccCCCCc
Q 005979 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCESPR 317 (666)
Q Consensus 242 ~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~---~~~~p~ilv~NK~D~~~ 317 (666)
+ +. ..+.+.+.+++.+|+|+|+. .-...+. .+.+.+... ...+|.++|+||+|...
T Consensus 224 ---~------------L~----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 224 ---G------------LG----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp ---C------------SC----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ---h------------hh----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 0 00 12345567899999999986 2111111 112222211 13689999999999876
Q ss_pred cchhh-HHHH-HhcCCCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 318 KGIMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 318 ~~~~~-~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
..... .... ...+..++++||.++.|+.+|++.|.+.+....
T Consensus 284 ~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 284 EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 42111 1222 234678999999999999999999999887543
No 370
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=4.2e-14 Score=150.47 Aligned_cols=184 Identities=20% Similarity=0.193 Sum_probs=118.0
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecC--------------------CCceEEEEEcCCCc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--------------------EGQKFRLIDTAGIR 431 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~--------------------~~~~~~liDTpG~~ 431 (666)
++|+++|.||||||||+|+|++.. ..+.+++++|.++........ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 589999999999999999999774 567788888887665554331 13479999999998
Q ss_pred cccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecccc----------CCHHHHHHH----------------------
Q 005979 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC----------ITEQDCRIA---------------------- 479 (666)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~----------~t~~d~~i~---------------------- 479 (666)
+..... ..+ ..+.+.+++.+|++++|+|+++. -...+..++
T Consensus 81 ~~a~~~---~~l----g~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~ 153 (368)
T 2dby_A 81 KGAHKG---EGL----GNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKE 153 (368)
T ss_dssp CCCCSS---SCT----THHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc---chH----HHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhh
Confidence 653211 111 24556789999999999999752 011222211
Q ss_pred --------------HH----HH-----------------------HhCCcEEEEEecccC--CCCcchhhHHHHHHHHHH
Q 005979 480 --------------ER----IE-----------------------QEGKGCLIVVNKWDT--IPNKNQQTATYYEQDVRE 516 (666)
Q Consensus 480 --------------~~----i~-----------------------~~~~pvIlv~NK~Dl--~~~~~~~~~~~~~~~l~~ 516 (666)
.. +. -..+|+++|+||.|. .+.... .+.+.+++
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n----~~~~~v~~ 229 (368)
T 2dby_A 154 ARADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN----PQVEAVRR 229 (368)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTC----HHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchh----hHHHHHHH
Confidence 00 00 013899999999984 221001 13334444
Q ss_pred HHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHH
Q 005979 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVA 569 (666)
Q Consensus 517 ~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~l~~~~~ 569 (666)
..... +++++++||+++.++.+|...-...+-+ ...+..+-|+++++..-.
T Consensus 230 ~a~~~-g~~vv~iSAk~E~el~eL~~~~~~~~l~-~~g~~~~gl~~li~~~~~ 280 (368)
T 2dby_A 230 KALEE-GAEVVVVSARLEAELAELSGEEARELLA-AYGLQESGLQRLARAGYR 280 (368)
T ss_dssp HHHHH-TCEEEEECHHHHHHHHTSCHHHHHHHHH-HTTCCSCHHHHHHHHHHH
T ss_pred HHHHc-CCeEEEeechhHHHHHHhchHHHHHHHH-HhCcchhhHHHHHHHHHH
Confidence 33332 4789999999999988887653322211 223446778888887543
No 371
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.50 E-value=1.9e-13 Score=156.99 Aligned_cols=114 Identities=20% Similarity=0.238 Sum_probs=90.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCccc-----------ccC------CCCcccceeEEEEeecCeeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 225 (666)
..+|+|+|++|+|||||+++|++..... +.+ ..++|.......+.+.+..+.+|||||+.++
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f- 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF- 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG-
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch-
Confidence 3579999999999999999998532110 011 1255666666677788899999999999752
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCc
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p 305 (666)
...+.+++..+|++++|+|+..++..+...+++.+.. .+.|
T Consensus 88 -------------------------------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip 128 (665)
T 2dy1_A 88 -------------------------------------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLP 128 (665)
T ss_dssp -------------------------------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCC
T ss_pred -------------------------------------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCC
Confidence 1345577889999999999999999998888888876 4899
Q ss_pred EEEEeccCCCC
Q 005979 306 IILAVNKCESP 316 (666)
Q Consensus 306 ~ilv~NK~D~~ 316 (666)
+++|+||+|+.
T Consensus 129 ~ilv~NKiD~~ 139 (665)
T 2dy1_A 129 RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECGGGC
T ss_pred EEEEecCCchh
Confidence 99999999986
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=4e-14 Score=149.96 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=94.5
Q ss_pred CCceEEEecCCCCChhHHHHHHhcc------CcccccCCCcceee--------------------eEeE-----------
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIVSPISGTTRD--------------------AIDT----------- 412 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~------~~~~~~~~~gtT~d--------------------~~~~----------- 412 (666)
....|+++|.+|+|||||+|.|++. ....+...++++.. .+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 3568999999999999999999742 22333333333220 0000
Q ss_pred ------EEe-cCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh
Q 005979 413 ------EFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE 485 (666)
Q Consensus 413 ------~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~ 485 (666)
... .+++..++||||||+.++ .. ...+.+|++|+|+|++.+.. ...++. ...
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~----------~~-------~~~~~aD~vl~Vvd~~~~~~---~~~l~~-~~~ 193 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQS----------ET-------EVARMVDCFISLQIAGGGDD---LQGIKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTH----------HH-------HHHTTCSEEEEEECC---------CCCCH-HHH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccch----------HH-------HHHHhCCEEEEEEeCCccHH---HHHHHH-hhh
Confidence 000 035678999999998642 10 13589999999999976522 111111 112
Q ss_pred CCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCC------CCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD------WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 486 ~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~------~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++|+++|+||+|+.... ........+...+.... ..+++++||++|.|+++|++.|.+...
T Consensus 194 ~~p~ivv~NK~Dl~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHT---NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHH---HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChH---HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57899999999996431 11222223333333222 367999999999999999999987654
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=2.4e-13 Score=131.57 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCee--EEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
..+|+++|.+|||||||+++|++.... ....+.++.+...+.+.++|.. +.+|||||+.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~------------ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT------------ 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh------------
Confidence 368999999999999999999987632 3344556666667777888865 4579999986532211
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEeccCCCCcc
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~-~i~~~l~~~-~~~~p~ilv~NK~D~~~~ 318 (666)
...+..++.+++|+|.....+.... .+...++.. ..+.|+++|+||+|+...
T Consensus 96 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 96 --------------------------SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp --------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1345678999999998653222211 223333321 246899999999998653
Q ss_pred c---hhhHHHH-HhcCCCCeeecccCCCChHHHHHHHHHHh
Q 005979 319 G---IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (666)
Q Consensus 319 ~---~~~~~~~-~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l 355 (666)
. ......+ ...++.++.+||+++.|+.++++.|.+.+
T Consensus 150 ~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 2 1122222 23566788899999999999999987653
No 374
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1.1e-13 Score=146.28 Aligned_cols=90 Identities=27% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-----------------eeEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~~~~~ 225 (666)
..+|+|||.||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3579999999999999999999987 7788999999999888777765 469999999997532
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~ 284 (666)
..... +..++...++.+|++++|+|+.+
T Consensus 81 ~~~~g-------------------------------l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEG-------------------------------LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGG-------------------------------GTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccch-------------------------------HHHHHHHHHHhcCeEEEEEecCC
Confidence 11000 11234567899999999999875
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=6.7e-14 Score=138.05 Aligned_cols=142 Identities=21% Similarity=0.177 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcccc--cCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
...++|+++|.+|+|||||+|+|++...... ...++++.+ +.+..+.+|||||+.....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~------------ 70 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRY------------ 70 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGGTH------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHHHH------------
Confidence 3467999999999999999999998763221 223333332 2567899999999965211
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCC---CCCCHHHHHHHHHHHh----hcCCCcEEEEec
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ---AGLTAADEEIADWLRK----NYMDKFIILAVN 311 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~---~~~~~~d~~i~~~l~~----~~~~~p~ilv~N 311 (666)
.+...+...+..+|++++|+|+. ..+......+.+.+.. ...+.|+++|+|
T Consensus 71 ----------------------~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 71 ----------------------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp ----------------------HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred ----------------------HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 11122223334599999999998 3344444444444432 124789999999
Q ss_pred cCCCCccchhh---------HHHH-HhcCCCCeeecccCCCC
Q 005979 312 KCESPRKGIMQ---------VSEF-WSLGFSPLPISAISGTG 343 (666)
Q Consensus 312 K~D~~~~~~~~---------~~~~-~~~~~~~i~iSa~~g~G 343 (666)
|+|+....... ...+ ...+..++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99997643211 1111 12234678899998765
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.48 E-value=5.8e-14 Score=138.86 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=95.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccC-----cccccCCCcceeeeE-------e-EEEe-----------------cCCC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTTRDAI-------D-TEFT-----------------GPEG 419 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~-----~~~~~~~~gtT~d~~-------~-~~~~-----------------~~~~ 419 (666)
..++|+++|.+|+|||||+|+|++.. ...+...++++.|.. . ..+. ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35789999999999999999998652 122223333322110 0 0000 1134
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCC
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~ 499 (666)
..+.+|||+|+.... .. +...++.+++|+|++.+... .+......++|+++|+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~---------~~--------~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---------VD--------FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGG---------GG--------CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCC---------ch--------hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 578999999952210 00 01256889999999886432 2222333568999999999985
Q ss_pred CCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 500 PNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
..... ..+...+.+... ....+++++||++|.|++++++.|.+.+..
T Consensus 168 ~~~~~-~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 168 EAVGA-DVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHTC-CHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cchhh-HHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 42111 122222222221 235789999999999999999999876543
No 377
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=142.81 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred hccEEEEEecCCCC--CCHHHH-HHHHHHHhh--cCCCcEEEEeccCCCCccchh-hHHHHHh--cCCCCeeecccCCCC
Q 005979 272 ESCVIIFLVDGQAG--LTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKGIM-QVSEFWS--LGFSPLPISAISGTG 343 (666)
Q Consensus 272 ~ad~il~VvD~~~~--~~~~d~-~i~~~l~~~--~~~~p~ilv~NK~D~~~~~~~-~~~~~~~--~~~~~i~iSa~~g~G 343 (666)
.||++|+|+|+... .+.... .++..+... ..+.|+++|+||+|+...... ....+.. .++.++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999875 443332 222323221 247899999999998653322 2223332 366889999999999
Q ss_pred hHHHHHHHHHHhh
Q 005979 344 TGELLDLVCSELK 356 (666)
Q Consensus 344 i~eLl~~I~~~l~ 356 (666)
++++++.|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=2.3e-14 Score=152.78 Aligned_cols=148 Identities=25% Similarity=0.280 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHh------cCCcccccCCCCccc------------------------------------
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTR------------------------------------ 199 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~~~~t~------------------------------------ 199 (666)
..++|+++|.+|||||||+++|. |.+...+...++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999986 333333332222221
Q ss_pred ----ceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccE
Q 005979 200 ----DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCV 275 (666)
Q Consensus 200 ----~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~ 275 (666)
+.. ..+...+..+.||||||+... ....+..+|+
T Consensus 158 ~~t~d~i-~~~~~~~~~~iiiDTpGi~~~-----------------------------------------~~~~~~~aD~ 195 (355)
T 3p32_A 158 RATRETV-VLLEAAGFDVILIETVGVGQS-----------------------------------------EVAVANMVDT 195 (355)
T ss_dssp HHHHHHH-HHHHHTTCCEEEEEECSCSSH-----------------------------------------HHHHHTTCSE
T ss_pred HHHHHHH-HHHhhCCCCEEEEeCCCCCcH-----------------------------------------HHHHHHhCCE
Confidence 000 011235688999999997530 0123488999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhh--HHHHH-----------hcCCCCeeecccCCC
Q 005979 276 IIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSEFW-----------SLGFSPLPISAISGT 342 (666)
Q Consensus 276 il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~--~~~~~-----------~~~~~~i~iSa~~g~ 342 (666)
+++|+|+..+...+ .+.......|+++|+||+|+....... ..++. .++.+++++||++|.
T Consensus 196 vl~V~d~~~~~~~~------~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 269 (355)
T 3p32_A 196 FVLLTLARTGDQLQ------GIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR 269 (355)
T ss_dssp EEEEEESSTTCTTT------TCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred EEEEECCCCCccHH------HHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence 99999986543221 111111346899999999987532111 11111 113578999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 005979 343 GTGELLDLVCSELKK 357 (666)
Q Consensus 343 Gi~eLl~~I~~~l~~ 357 (666)
|+++|++.|.+.++.
T Consensus 270 Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 270 GLAELWDTVERHRQV 284 (355)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 379
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=4.3e-14 Score=161.66 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=118.2
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcc-----------cccCC------CCcccceeEEEEeecCeeEEEEecCCcccccC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVDE------PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~-----------~~~~~------~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 226 (666)
..|+|+||.++|||||..+|+..... .+.++ .|+|.......+.|.+..|.||||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 46899999999999999999632111 01111 2567766667788999999999999998743
Q ss_pred CchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcE
Q 005979 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ 306 (666)
..+.++++-+|.+|+|+|+..|+..++..+++.+.+. +.|.
T Consensus 82 -------------------------------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~ 122 (638)
T 3j25_A 82 -------------------------------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIPT 122 (638)
T ss_dssp -------------------------------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCSC
T ss_pred -------------------------------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCe
Confidence 4456888999999999999999999999999998874 7899
Q ss_pred EEEeccCCCCccchhhH---------------------------------------------HH----------------
Q 005979 307 ILAVNKCESPRKGIMQV---------------------------------------------SE---------------- 325 (666)
Q Consensus 307 ilv~NK~D~~~~~~~~~---------------------------------------------~~---------------- 325 (666)
++++||+|+...+.... .+
T Consensus 123 i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~ 202 (638)
T 3j25_A 123 IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQE 202 (638)
T ss_dssp EECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHH
Confidence 99999999864221000 00
Q ss_pred ----HHhcC-CCCeeecccCCCChHHHHHHHHHHhhhhc
Q 005979 326 ----FWSLG-FSPLPISAISGTGTGELLDLVCSELKKVE 359 (666)
Q Consensus 326 ----~~~~~-~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~ 359 (666)
+.... ++++..||.++.|++.|++.|.+.++...
T Consensus 203 ~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 203 ESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp HHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSG
T ss_pred HhhhhcccccccccccccccCCCchhHhhhhhccccCcc
Confidence 00111 36778899999999999999999887543
No 380
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.46 E-value=2.7e-13 Score=141.04 Aligned_cols=142 Identities=22% Similarity=0.196 Sum_probs=92.1
Q ss_pred HHHHhccEEEEEecCCCCC-CHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccchh-hHHHHH-hcC--CCCeeecccCC
Q 005979 268 AAIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLG--FSPLPISAISG 341 (666)
Q Consensus 268 ~~i~~ad~il~VvD~~~~~-~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~~~-~~~--~~~i~iSa~~g 341 (666)
.+++++|++|+|+|++.+. +... ..++..++. .+.|+++|+||+|+...... +...+. ..+ +.++++||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCC
Confidence 3568899999999998764 3321 122333343 47899999999998754321 111111 122 67899999999
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC-------cceeeeEeEEE
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEF 414 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~-------gtT~d~~~~~~ 414 (666)
.|+++++..+. ...++++|.+|+|||||+|.|.|......+... ++|+.... +
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~ 217 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--L 217 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--E
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--E
Confidence 99999987752 136899999999999999999986544333322 23433221 2
Q ss_pred ecCCCceEEEEEcCCCccc
Q 005979 415 TGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 415 ~~~~~~~~~liDTpG~~~~ 433 (666)
.. . ..-.++||||+...
T Consensus 218 ~~-~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 218 KF-D-FGGYVVDTPGFANL 234 (301)
T ss_dssp EC-T-TSCEEESSCSSTTC
T ss_pred Ec-C-CCCEEEECcCCCcc
Confidence 11 1 22478999998654
No 381
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=147.33 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=85.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccC-------CCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP-------ISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGS 441 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~-------~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~ 441 (666)
.++|+++|.+|+|||||+|+|+|........ .+++.++.+...+.. .+. .+.+|||||+.+.........
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------CH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-CCcccceeeeechhhhhhccchhhHH
Confidence 4689999999999999999999865421110 111222222222221 222 689999999976421100001
Q ss_pred hhhHHHHHHHHHHH-----------hh--CCeEEEEeecc-ccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhH
Q 005979 442 TTEALSVNRAFRAI-----------RR--SDVVALVIEAM-ACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA 507 (666)
Q Consensus 442 ~~e~~~~~~~~~~i-----------~~--advvllViDa~-~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~ 507 (666)
.+..+...+...++ +. +|++||+++.+ .++...+..+++.+.. ++|+|+|+||+|+..... .
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~e---v 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE---C 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHH---H
Confidence 11111111112222 22 45677777776 6888888888888764 899999999999976432 2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHH
Q 005979 508 TYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (666)
Q Consensus 508 ~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~ 546 (666)
..+...+.+.+... +++++++||+++.++.+++..+..
T Consensus 186 ~~~k~~i~~~~~~~-~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 186 QQFKKQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHH-TCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHc-CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 33344555555443 688999999999999987776654
No 382
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=1.2e-13 Score=140.53 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=101.5
Q ss_pred CceEEEecCCCCChhHHHHHHh-----ccCcccccCCCcce----------------eeeEeEEE---------------
Q 005979 371 IPAIAIVGRPNVGKSSILNALV-----GEDRTIVSPISGTT----------------RDAIDTEF--------------- 414 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll-----~~~~~~~~~~~gtT----------------~d~~~~~~--------------- 414 (666)
...++++|++|||||||+++|. |.....+..-++.+ ++.+....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4568889999999999999998 65555544333211 11000000
Q ss_pred ----------ecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHH-H----H
Q 005979 415 ----------TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCR-I----A 479 (666)
Q Consensus 415 ----------~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~-i----~ 479 (666)
...++..+.||||||+.+..... ........++.. +++++|+|+.......+.. . .
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--------~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--------EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--------HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--------hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 00112479999999986532211 001122234456 8999999998765555433 1 1
Q ss_pred HHHHHhCCcEEEEEecccCCCCcchhhHHHHHHH---HHHH------------------HhcC-CCCCEEEEeCccCCCH
Q 005979 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD---VREK------------------LRAL-DWAPIVYSTAIAGQSV 537 (666)
Q Consensus 480 ~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~---l~~~------------------l~~~-~~~~ii~vSAk~g~gv 537 (666)
......++|+++|+||+|+...........+.+. +... +... ...+++++||++|.|+
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi 244 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 244 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH
T ss_pred HHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccH
Confidence 2233458999999999999653211111111100 0011 1222 2358999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005979 538 DKIIVAAEMVDKE 550 (666)
Q Consensus 538 ~~L~~~i~~~~~~ 550 (666)
++|++.|.+.+..
T Consensus 245 ~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 245 EDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999877653
No 383
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.45 E-value=2.1e-13 Score=145.58 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccc-----------------------------------------
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD----------------------------------------- 200 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~----------------------------------------- 200 (666)
..|+|++||.+|+|||||+|+|+|......+ ...+|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 5689999999999999999999997532211 1112211
Q ss_pred -------------eeEEEE-eecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHH
Q 005979 201 -------------RMYGRS-FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQA 266 (666)
Q Consensus 201 -------------~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 266 (666)
.....+ ......+.+|||||+.......+ ...+...+...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q-------------------------~~~~~~~~~~~~ 166 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ-------------------------SDSIVKDIENMV 166 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC-------------------------CSSHHHHHHHHH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCC-------------------------chhHHHHHHHHH
Confidence 111111 11245799999999986432110 011223455677
Q ss_pred HHHHHhccEEEEEecCCC-CCC-HHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHH----HhcCCCCeeecccC
Q 005979 267 TAAIEESCVIIFLVDGQA-GLT-AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF----WSLGFSPLPISAIS 340 (666)
Q Consensus 267 ~~~i~~ad~il~VvD~~~-~~~-~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~----~~~~~~~i~iSa~~ 340 (666)
..++..+|++|+|+|+.. ... .....+++.+.. .++|+++|+||+|+........... ..+++.++++|+.+
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 244 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLATSDAIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRS 244 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCC
T ss_pred HHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECC
Confidence 788999999999998643 222 223444444443 4789999999999876432211111 12456789999999
Q ss_pred CCChHHHHHHH
Q 005979 341 GTGTGELLDLV 351 (666)
Q Consensus 341 g~Gi~eLl~~I 351 (666)
+.++++++..+
T Consensus 245 ~~~i~~~~~~~ 255 (360)
T 3t34_A 245 QADINKNVDMI 255 (360)
T ss_dssp HHHHHTTCCHH
T ss_pred hHHhccCCCHH
Confidence 98887765443
No 384
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=3.9e-13 Score=139.77 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=84.7
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCC--------CcceeeeEeEEEecCCC--ceEEEEEcCCCccccccccC
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI--------SGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASS 439 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~--------~gtT~d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~ 439 (666)
-.++|+++|++|+|||||+|+|++...+..+.. +++....+...+.. ++ ..+.+|||||+.........
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-CCcccCcchhhhhhhhhhcCcHHH
Confidence 347999999999999999999987633332221 11112222222221 22 37899999998432100000
Q ss_pred CchhhHHHHHHHHHHHhh-------------CCeEEEEeeccc-cCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchh
Q 005979 440 GSTTEALSVNRAFRAIRR-------------SDVVALVIEAMA-CITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQ 505 (666)
Q Consensus 440 ~~~~e~~~~~~~~~~i~~-------------advvllViDa~~-~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~ 505 (666)
...+..+...+...+++. ++++|++++.+. ++...+..+++.+. .+.|+++|+||+|+......
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~- 173 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKER- 173 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHH-
Confidence 011111111222233332 345677777554 58777766666554 35799999999999753221
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 506 TATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 506 ~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
....+.+.+.+... +++++++||++| |++++|..+.+...
T Consensus 174 --~~~~~~~~~~~~~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 174 --ERLKKRILDEIEEH-NIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp --HHHHHHHHHHHHHT-TCCCCCCC----------CHHHHHHHH
T ss_pred --HHHHHHHHHHHHHc-CCeEEecCCccc-cccHHHHHHHHHhh
Confidence 12233444444444 578999999999 99999988876543
No 385
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=2.5e-13 Score=152.48 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=90.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHhccCcc--cccCCCcceeeeEeEE---------------------------------
Q 005979 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT--IVSPISGTTRDAIDTE--------------------------------- 413 (666)
Q Consensus 369 ~~~~kI~vvG~~nvGKSSLin~ll~~~~~--~~~~~~gtT~d~~~~~--------------------------------- 413 (666)
...++|+|+|.+|+|||||+|+|++.... .++..++|++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 34689999999999999999999998754 5777777755321100
Q ss_pred ---EecCCC---ceEEEEEcCCCccccccccCCchhhHH--HHHHHHHHHhhCCeEEEEeeccc-cCCHHHHHHHHHHHH
Q 005979 414 ---FTGPEG---QKFRLIDTAGIRKRAAIASSGSTTEAL--SVNRAFRAIRRSDVVALVIEAMA-CITEQDCRIAERIEQ 484 (666)
Q Consensus 414 ---~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~e~~--~~~~~~~~i~~advvllViDa~~-~~t~~d~~i~~~i~~ 484 (666)
+.. .+ ..+.||||||+.+.... .+... ....+..+++.+|++|+|+|+++ +.+.++..+++.+..
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~-----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ-----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG 216 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC------------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh-----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence 000 00 36899999999752110 00110 12344567899999999999988 578888888888887
Q ss_pred hCCcEEEEEecccCCCC
Q 005979 485 EGKGCLIVVNKWDTIPN 501 (666)
Q Consensus 485 ~~~pvIlv~NK~Dl~~~ 501 (666)
.+.|+++|+||+|+...
T Consensus 217 ~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVET 233 (550)
T ss_dssp CGGGEEEEEECGGGSCH
T ss_pred cCCCEEEEEECCCccCH
Confidence 78999999999999764
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.43 E-value=5e-13 Score=142.16 Aligned_cols=89 Identities=31% Similarity=0.377 Sum_probs=69.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeec---------------------CeeEEEEecCCcc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---------------------EHEFMLVDTGGVL 222 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~i~liDTpG~~ 222 (666)
.+|+|+|.||||||||+|+|++.. +.+.++|++|.+...+...+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 479999999999999999999875 667889999998888776542 3579999999997
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC
Q 005979 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (666)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~ 284 (666)
........ +..++...++.+|++++|+|+.+
T Consensus 81 ~~a~~~~~-------------------------------lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEG-------------------------------LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSC-------------------------------TTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccch-------------------------------HHHHHHHHHHhCCEEEEEEECCC
Confidence 64322111 11455677899999999999875
No 387
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=5.3e-13 Score=138.85 Aligned_cols=140 Identities=20% Similarity=0.182 Sum_probs=95.6
Q ss_pred HHHhccEEEEEecCCCCC-CHHH-HHHHHHHHhhcCCCcEEEEeccCCCCccc----hhhHHHHH-hcCCCCeeecccCC
Q 005979 269 AIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG----IMQVSEFW-SLGFSPLPISAISG 341 (666)
Q Consensus 269 ~i~~ad~il~VvD~~~~~-~~~d-~~i~~~l~~~~~~~p~ilv~NK~D~~~~~----~~~~~~~~-~~~~~~i~iSa~~g 341 (666)
.+.++|++++|+|++++. +... ..++..+.. .++|+++|+||+|+.+.. ......++ ..|++++++||++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG 153 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 478999999999998764 4432 122223343 589999999999997643 12222333 46888999999999
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCCc-------ceeeeEeEEE
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEF 414 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~g-------tT~d~~~~~~ 414 (666)
.|+++|++.+. ...++++|.+|+|||||+|.|+ .....++.... +|+.... +
T Consensus 154 ~gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~ 212 (302)
T 2yv5_A 154 EGIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--I 212 (302)
T ss_dssp TTHHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--E
T ss_pred CCHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--E
Confidence 99999987652 1368999999999999999998 65444444332 4443322 2
Q ss_pred ecCCCceEEEEEcCCCccc
Q 005979 415 TGPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 415 ~~~~~~~~~liDTpG~~~~ 433 (666)
.. . ..-.++||||+..+
T Consensus 213 ~~-~-~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 213 PF-G-KGSFVGDTPGFSKV 229 (302)
T ss_dssp EE-T-TTEEEESSCCCSSC
T ss_pred Ec-C-CCcEEEECcCcCcC
Confidence 11 1 12478999998644
No 388
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.39 E-value=1.1e-12 Score=136.24 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=99.3
Q ss_pred eEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
+|+++|..|||||||++++.+..........+.|.......+. ...++.+|||||.+.+....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~---------------- 63 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS---------------- 63 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS----------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh----------------
Confidence 4889999999999999998865322211122233333222221 23689999999998742110
Q ss_pred CCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHH---hhcCCCcEEEEeccCCCCccch-
Q 005979 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KNYMDKFIILAVNKCESPRKGI- 320 (666)
Q Consensus 245 G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~---~~~~~~p~ilv~NK~D~~~~~~- 320 (666)
+ ....+++.++++++|+|....+...-..+.+++. ....+.|+++|+||+|+.....
T Consensus 64 -----------------l--~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 64 -----------------Y--DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp -----------------H--HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred -----------------h--hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 0 1235578999999999998773333334434332 3335789999999999976421
Q ss_pred ----hh--H---HHHHh-----cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 321 ----MQ--V---SEFWS-----LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 321 ----~~--~---~~~~~-----~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. . .++.. .++.++++||++ .++.+.+..|.+.+-
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 11 1 11222 244689999987 589999988876654
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.39 E-value=2e-13 Score=144.53 Aligned_cols=148 Identities=19% Similarity=0.179 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHh------cCCcccccCCCCcccc--------------------eeE---------E--
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRD--------------------RMY---------G-- 204 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~~~~t~~--------------------~~~---------~-- 204 (666)
...+|+++|++|+|||||+|.|+ +.+..++...++.|.. +.. +
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 35689999999999999999996 3344444444433220 000 0
Q ss_pred --------EEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEE
Q 005979 205 --------RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (666)
Q Consensus 205 --------~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~i 276 (666)
.+.+.+..+.+|||||+.... . .....+|++
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~--------------------------------------~---~~~~~aD~v 173 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE--------------------------------------T---EVARMVDCF 173 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH--------------------------------------H---HHHTTCSEE
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH--------------------------------------H---HHHHhCCEE
Confidence 011457889999999986410 0 124789999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh-hH-HHHH----hc-------CCCCeeecccCCCC
Q 005979 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV-SEFW----SL-------GFSPLPISAISGTG 343 (666)
Q Consensus 277 l~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~-~~~~----~~-------~~~~i~iSa~~g~G 343 (666)
++|+|+..+...+ .+.... .+.|.++|+||+|+...... .. .++. .. ..+++++||++|.|
T Consensus 174 l~Vvd~~~~~~~~--~l~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 174 ISLQIAGGGDDLQ--GIKKGL----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp EEEECC------C--CCCHHH----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred EEEEeCCccHHHH--HHHHhh----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 9999987542111 010011 14578999999998754211 11 1111 11 23568999999999
Q ss_pred hHHHHHHHHHHhh
Q 005979 344 TGELLDLVCSELK 356 (666)
Q Consensus 344 i~eLl~~I~~~l~ 356 (666)
+++|++.|.+.+.
T Consensus 248 i~~L~~~l~~~~~ 260 (341)
T 2p67_A 248 IDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 390
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.39 E-value=1.3e-13 Score=142.85 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHhccEEEEEecCCCCCCHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccch-----hhHHHHH-hcCCCCeeecccCC
Q 005979 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI-----MQVSEFW-SLGFSPLPISAISG 341 (666)
Q Consensus 269 ~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~-----~~~~~~~-~~~~~~i~iSa~~g 341 (666)
.+.++|.+++|+|+..+....+ .+.++|.. ...++|.++|+||+|+.+... .....+| ..|++++.+||.+|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4789999999999997766555 56666642 125889999999999987532 2233444 56899999999999
Q ss_pred CChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCcccccCCC-------cceeeeEeEEE
Q 005979 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEF 414 (666)
Q Consensus 342 ~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~-------gtT~d~~~~~~ 414 (666)
.|+++|+... + ...++++|.+|||||||+|.|+|.....++... +||+.... +
T Consensus 162 ~g~~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~ 221 (307)
T 1t9h_A 162 DSLADIIPHF----Q--------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--I 221 (307)
T ss_dssp TTCTTTGGGG----T--------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--E
T ss_pred CCHHHHHhhc----C--------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--h
Confidence 9998876532 1 237999999999999999999986654444433 45554322 2
Q ss_pred ecCCCceEEEEEcCCCcccc
Q 005979 415 TGPEGQKFRLIDTAGIRKRA 434 (666)
Q Consensus 415 ~~~~~~~~~liDTpG~~~~~ 434 (666)
.. . ...++||||+..+.
T Consensus 222 ~~-~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 222 HT-S--GGLVADTPGFSSLE 238 (307)
T ss_dssp EE-T--TEEEESSCSCSSCC
T ss_pred hc-C--CEEEecCCCccccc
Confidence 21 1 24789999987643
No 391
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.36 E-value=8.6e-13 Score=127.22 Aligned_cols=116 Identities=24% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCccc--ccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 239 (666)
..++|+++|.+|||||||+|+|++..... ....++++.+ +.+..+.+|||||+.......
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~----------- 108 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKL----------- 108 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCH-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHH-----------
Confidence 45789999999999999999999876322 1223333322 256789999999997643221
Q ss_pred cccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCC-CCCC--HHHHHHHHHHHhh----cCCCcEEEEecc
Q 005979 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLT--AADEEIADWLRKN----YMDKFIILAVNK 312 (666)
Q Consensus 240 ~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~-~~~~--~~d~~i~~~l~~~----~~~~p~ilv~NK 312 (666)
...+...+..+|++++|+|+. ..-+ .....+..++... ..+.|+++|+||
T Consensus 109 -----------------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 165 (193)
T 2ged_A 109 -----------------------SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165 (193)
T ss_dssp -----------------------HHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred -----------------------HHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEc
Confidence 122334456699999999997 2211 1112222333221 147899999999
Q ss_pred CCCCcc
Q 005979 313 CESPRK 318 (666)
Q Consensus 313 ~D~~~~ 318 (666)
+|+...
T Consensus 166 ~Dl~~~ 171 (193)
T 2ged_A 166 SELFTA 171 (193)
T ss_dssp TTSTTC
T ss_pred hHhcCC
Confidence 998754
No 392
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=3.5e-12 Score=147.71 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc-----------------cccCCCCcccceeEEEEeec-------CeeEEEEec
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----------------IVVDEPGVTRDRMYGRSFWG-------EHEFMLVDT 218 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~-----------------~~~~~~~~t~~~~~~~~~~~-------~~~i~liDT 218 (666)
...|+|+||.++|||||..+|+-.... ......|+|.......+.|. +..+.||||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 347999999999999999998632110 01223466666666666664 467999999
Q ss_pred CCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHH
Q 005979 219 GGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR 298 (666)
Q Consensus 219 pG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~ 298 (666)
||+.++. ..+.++++-+|.+|+|||+..|+..++..+++.+.
T Consensus 93 PGHvDF~--------------------------------------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~ 134 (709)
T 4fn5_A 93 PGHVDFT--------------------------------------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN 134 (709)
T ss_dssp CSCTTCH--------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred CCCcccH--------------------------------------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH
Confidence 9998743 44568899999999999999999999999999887
Q ss_pred hhcCCCcEEEEeccCCCCc
Q 005979 299 KNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 299 ~~~~~~p~ilv~NK~D~~~ 317 (666)
+ .+.|.++++||+|+..
T Consensus 135 ~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 135 K--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp H--HTCCEEEEEECSSSTT
T ss_pred H--cCCCeEEEEccccccC
Confidence 7 3889999999999863
No 393
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=3.4e-12 Score=143.27 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCCcc--cccCCCCcccceeEEE---------------------------------
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGR--------------------------------- 205 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~~~--~~~~~~~~t~~~~~~~--------------------------------- 205 (666)
...++|+++|.+|+|||||+|+|+|.+.. .++..+++++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998754 4666666654221100
Q ss_pred ---EeecC---eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEE
Q 005979 206 ---SFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (666)
Q Consensus 206 ---~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~V 279 (666)
+.+.+ ..+.+|||||+....... +.+ .+ .+...+...+..+|++|+|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~-----------------------~~--~f~~~~~~~l~~aD~il~V 195 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQR--VSR-----------------------GY--DFPAVLRWFAERVDLIILL 195 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------C-----------------------CS--CHHHHHHHHHHHCSEEEEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhH--HHH-----------------------Hh--hHHHHHHHHHHhCCEEEEE
Confidence 00000 368999999997521100 000 00 0124455677899999999
Q ss_pred ecCCC-CCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCcc
Q 005979 280 VDGQA-GLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (666)
Q Consensus 280 vD~~~-~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~ 318 (666)
+|+.. +....+..+++.++. .+.|+++|+||+|+...
T Consensus 196 vDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 196 FDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKADMVET 233 (550)
T ss_dssp EETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGGGSCH
T ss_pred EeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCCccCH
Confidence 99987 577777778777765 46899999999998764
No 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.34 E-value=1.8e-13 Score=135.32 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=90.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC-----CcccccCCCCcccceeE--------EEE------------------eecCe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMY--------GRS------------------FWGEH 211 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~-----~~~~~~~~~~~t~~~~~--------~~~------------------~~~~~ 211 (666)
.++|+++|++|+|||||+|+|++. +.+.+...++.+.+... ..+ .+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999999864 22333334443322100 000 12334
Q ss_pred eEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHH
Q 005979 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (666)
Q Consensus 212 ~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~ 291 (666)
.+.+|||+|.... +.. + -..++.+++|+|+..+....
T Consensus 110 d~iiidt~G~~~~---~~~-------------------------------~-------~~~~~~~i~vvd~~~~~~~~-- 146 (221)
T 2wsm_A 110 DLLLIENVGNLIC---PVD-------------------------------F-------DLGENYRVVMVSVTEGDDVV-- 146 (221)
T ss_dssp SEEEEEEEEBSSG---GGG-------------------------------C-------CCSCSEEEEEEEGGGCTTHH--
T ss_pred CEEEEeCCCCCCC---Cch-------------------------------h-------ccccCcEEEEEeCCCcchhh--
Confidence 6777777774210 000 0 01357799999998764322
Q ss_pred HHHHHHHhhcCCCcEEEEeccCCCCcc---chhhHHHH-Hh--cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 292 EIADWLRKNYMDKFIILAVNKCESPRK---GIMQVSEF-WS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 292 ~i~~~l~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~-~~--~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..+... .+.|+++|+||+|+... ........ .. .+.+++++||++|.|+.+|++.|.+.+..
T Consensus 147 --~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 147 --EKHPEI--FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp --HHCHHH--HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred --hhhhhh--hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 122222 25789999999998643 11122222 12 23578999999999999999999887654
No 395
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.32 E-value=9.1e-12 Score=129.43 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCC--------CCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE--------PGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIM 232 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 232 (666)
.++|+++|.+|||||||+|+|.|......+.. +++............+ ..+.+|||||+.........
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~-- 95 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC-- 95 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH--
Confidence 46899999999999999999988632222111 1111111111122222 46899999999542110000
Q ss_pred hhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHh-------------ccEEEEEecCC-CCCCHHHHHHHHHHH
Q 005979 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDGQ-AGLTAADEEIADWLR 298 (666)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~-------------ad~il~VvD~~-~~~~~~d~~i~~~l~ 298 (666)
...+...+..++...+.. +++++|+.+.. +++.+.+.++++.+.
T Consensus 96 ----------------------~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~ 153 (301)
T 2qnr_A 96 ----------------------FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 153 (301)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH
Confidence 011111222222233322 34577777754 468888765555543
Q ss_pred hhcCCCcEEEEeccCCCCccchhh-----HHH-HHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 299 KNYMDKFIILAVNKCESPRKGIMQ-----VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 299 ~~~~~~p~ilv~NK~D~~~~~~~~-----~~~-~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
...++++|+||+|+....... ... ....++.++++||++| |+++++..+.+.+.
T Consensus 154 ---~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 154 ---NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp ---TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred ---hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 367999999999987643211 112 2346788999999999 99999998887765
No 396
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.32 E-value=2.3e-12 Score=130.87 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHh-----cCCcccccCCCCcc----------------cceeEEEE---------------
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV-----GGNRAIVVDEPGVT----------------RDRMYGRS--------------- 206 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~-----~~~~~~~~~~~~~t----------------~~~~~~~~--------------- 206 (666)
...++++|.+|||||||++.|. |.+...+...++.+ .+......
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4588899999999999999998 77766665444311 11000000
Q ss_pred ----------ee-cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccE
Q 005979 207 ----------FW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCV 275 (666)
Q Consensus 207 ----------~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~ 275 (666)
.+ .+..+.+|||||+....... .+.......+.. ++
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--------------------------------~l~~~~~~~~~~-~~ 140 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--------------------------------EFGVRLMENLPY-PL 140 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--------------------------------HHHHHHHHTSSS-CE
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--------------------------------hhHHHHHHHHhh-ce
Confidence 00 12479999999986421000 011222334466 89
Q ss_pred EEEEecCCCCCCHHHHH-HH----HHHHhhcCCCcEEEEeccCCCCccchh-hHHH------------------------
Q 005979 276 IIFLVDGQAGLTAADEE-IA----DWLRKNYMDKFIILAVNKCESPRKGIM-QVSE------------------------ 325 (666)
Q Consensus 276 il~VvD~~~~~~~~d~~-i~----~~l~~~~~~~p~ilv~NK~D~~~~~~~-~~~~------------------------ 325 (666)
+++|+|+.......+.. .. ..... .+.|+++|+||+|+...... ....
T Consensus 141 iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 218 (262)
T 1yrb_A 141 VVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAY 218 (262)
T ss_dssp EEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHH
T ss_pred EEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHh
Confidence 99999987766665532 11 11222 36899999999998753211 0000
Q ss_pred -----HHhcC--CCCeeecccCCCChHHHHHHHHHHhhhh
Q 005979 326 -----FWSLG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 326 -----~~~~~--~~~i~iSa~~g~Gi~eLl~~I~~~l~~~ 358 (666)
....+ .+++++||++|.|+++|++.|.+.++..
T Consensus 219 ~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 219 KMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 01222 3789999999999999999999887643
No 397
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=2.5e-12 Score=151.29 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=85.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccccc---------------CCCCcccceeEEEEeec----------------Cee
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------------EHE 212 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~ 212 (666)
.+|+|+|++|+|||||+|+|++....+.. ...++|.......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 47999999999999999999865322211 12345555444445554 578
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHH
Q 005979 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE 292 (666)
Q Consensus 213 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~ 292 (666)
+.||||||+.++. ..+.++++.+|++|+|+|+..+.+.++..
T Consensus 100 i~liDTPG~~df~--------------------------------------~~~~~~l~~aD~ailVvDa~~g~~~qt~~ 141 (842)
T 1n0u_A 100 INLIDSPGHVDFS--------------------------------------SEVTAALRVTDGALVVVDTIEGVCVQTET 141 (842)
T ss_dssp EEEECCCCCCSSC--------------------------------------HHHHHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred EEEEECcCchhhH--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 9999999997632 23456788999999999999999998887
Q ss_pred HHHHHHhhcCCCcEEEEeccCCCC
Q 005979 293 IADWLRKNYMDKFIILAVNKCESP 316 (666)
Q Consensus 293 i~~~l~~~~~~~p~ilv~NK~D~~ 316 (666)
++..+.. .+.|+++|+||+|+.
T Consensus 142 ~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 142 VLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHH--cCCCeEEEEECCCcc
Confidence 7766655 478999999999986
No 398
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=133.41 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcCCcccccCCCC------cccc--eeEEEEeecC--eeEEEEecCCcccccCCchhh
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG------VTRD--RMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNI 231 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~------~t~~--~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~ 231 (666)
-.+.|+|+|.+|+|||||+|.|+|......+ ..+ .|.. .........+ ..+.++||||+........ .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~-~ 107 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN-C 107 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh-h
Confidence 3457999999999999999999997632221 111 1111 1111111122 3689999999975321100 0
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHH-------------HhccEEEEEecCC-CCCCHHHHHHHHHH
Q 005979 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI-------------EESCVIIFLVDGQ-AGLTAADEEIADWL 297 (666)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i-------------~~ad~il~VvD~~-~~~~~~d~~i~~~l 297 (666)
...+...+..++...+ ..++++||+++.. +++.+.+..+++.|
T Consensus 108 -----------------------~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L 164 (418)
T 2qag_C 108 -----------------------WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 164 (418)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH
Confidence 0011122223332222 2356788888876 78999988777777
Q ss_pred HhhcCCCcEEEEeccCCCCccchhhH------HHHHhcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 298 RKNYMDKFIILAVNKCESPRKGIMQV------SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 298 ~~~~~~~p~ilv~NK~D~~~~~~~~~------~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.. +.|+|+|+||+|+........ ..+...++.++.+||.++.++.+++..+...+|
T Consensus 165 ~~---~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 165 HE---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TT---TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred hc---cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 54 789999999999876432211 112345788999999999999887666654433
No 399
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.24 E-value=2.6e-12 Score=135.69 Aligned_cols=147 Identities=25% Similarity=0.257 Sum_probs=88.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhc------CCcccccCCCCccc-------------------------------------
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVG------GNRAIVVDEPGVTR------------------------------------- 199 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~------~~~~~~~~~~~~t~------------------------------------- 199 (666)
...|+|+|.+|+|||||+|.|.| .+..+.+..+..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 45899999999999999999983 34333332222211
Q ss_pred ceeEE--EEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEE
Q 005979 200 DRMYG--RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (666)
Q Consensus 200 ~~~~~--~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il 277 (666)
+.... .+...+..+.+|||||+... . ......+|+++
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~----~-------------------------------------~~v~~~~d~vl 173 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQS----E-------------------------------------TAVADLTDFFL 173 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSC----H-------------------------------------HHHHTTSSEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcc----h-------------------------------------hhHHhhCCEEE
Confidence 10000 01235789999999998641 0 01236899999
Q ss_pred EEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchh---hHHHH---Hh-c-------CCCCeeecccCCCC
Q 005979 278 FLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM---QVSEF---WS-L-------GFSPLPISAISGTG 343 (666)
Q Consensus 278 ~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~---~~-~-------~~~~i~iSa~~g~G 343 (666)
+|+|+..+... ..+...+. ..+.++|+||+|+...... ....+ .. . ..+++++||++|.|
T Consensus 174 ~v~d~~~~~~~--~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~g 247 (337)
T 2qm8_A 174 VLMLPGAGDEL--QGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG 247 (337)
T ss_dssp EEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred EEEcCCCcccH--HHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCC
Confidence 99998643210 01111111 2356788899997532111 01111 10 1 23578999999999
Q ss_pred hHHHHHHHHHHhh
Q 005979 344 TGELLDLVCSELK 356 (666)
Q Consensus 344 i~eLl~~I~~~l~ 356 (666)
+++|++.|.+..+
T Consensus 248 i~~L~~~I~~~~~ 260 (337)
T 2qm8_A 248 LDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 400
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=6.6e-11 Score=126.56 Aligned_cols=62 Identities=24% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecC-----------------eeEEEEecCCcccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNV 224 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~~~~ 224 (666)
..+|+|+|.||||||||+|+|+|...+.++++|++|.++..+.+.+.+ ..+.++||||+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 468999999999999999999998865899999999999999888876 36899999998753
No 401
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.21 E-value=3e-11 Score=127.50 Aligned_cols=140 Identities=24% Similarity=0.327 Sum_probs=91.0
Q ss_pred HHhccEEEEEecCCCCCCHHHHHHHHHHHh-hcCCCcEEEEeccCCCCccchh----h-HHHHHhcCCCCeeecccCCCC
Q 005979 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM----Q-VSEFWSLGFSPLPISAISGTG 343 (666)
Q Consensus 270 i~~ad~il~VvD~~~~~~~~d~~i~~~l~~-~~~~~p~ilv~NK~D~~~~~~~----~-~~~~~~~~~~~i~iSa~~g~G 343 (666)
+.++|.+++| |+..+.... ..+.++|.. ...++|.++|+||+|+.+.... . ...|...|++++++||.+|.|
T Consensus 128 ~anvD~v~iv-~a~~P~~~~-~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL-NIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH-HHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HhcCCEEEEE-EeCCCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 5789999976 555443322 245566532 1147888999999999865321 1 223446799999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhccCc-ccccCCC---c----ceeeeEeEEEe
Q 005979 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR-TIVSPIS---G----TTRDAIDTEFT 415 (666)
Q Consensus 344 i~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~~~-~~~~~~~---g----tT~d~~~~~~~ 415 (666)
+++|...+ + .-.++++|.+|||||||+|.|+|... ..+.... | +|+......+
T Consensus 206 l~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v- 266 (358)
T 2rcn_A 206 LKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF- 266 (358)
T ss_dssp HHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEEC-
T ss_pred HHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEE-
Confidence 99987653 1 13789999999999999999998765 4333332 2 3333222221
Q ss_pred cCCCceEEEEEcCCCccc
Q 005979 416 GPEGQKFRLIDTAGIRKR 433 (666)
Q Consensus 416 ~~~~~~~~liDTpG~~~~ 433 (666)
..+ ..++||||+..+
T Consensus 267 -~q~--~~l~dtpgv~e~ 281 (358)
T 2rcn_A 267 -PHG--GDVIDSPGVREF 281 (358)
T ss_dssp -TTS--CEEEECHHHHTC
T ss_pred -CCC--CEecCcccHHHh
Confidence 122 367999997653
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.21 E-value=2.4e-11 Score=120.34 Aligned_cols=155 Identities=16% Similarity=0.095 Sum_probs=85.4
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcc-----cccCCCcceeee--------EeEEEec-------------------C
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISGTTRDA--------IDTEFTG-------------------P 417 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~-----~~~~~~gtT~d~--------~~~~~~~-------------------~ 417 (666)
..++|+++|.+|||||||+++|+..... .+...++++.|. ....+.. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4679999999999999999999864211 111111111110 0000000 0
Q ss_pred CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEeccc
Q 005979 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWD 497 (666)
Q Consensus 418 ~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~D 497 (666)
.+..+.++||+|..-.. .. .-...+..+.|+|+..+..... ......++|+++|+||+|
T Consensus 117 ~~~d~~~id~~g~i~~~---------~s--------~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~D 175 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---------AD--------FDLGTHKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKID 175 (226)
T ss_dssp GGCSEEEEECCSCSSGG---------GG--------CCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGG
T ss_pred CCCCEEEEeCCCCccCc---------ch--------hhhccCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccc
Confidence 01156777777742100 00 0012355667778644321111 111124689999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhc-CCCCCEEEEeCccCCCHHHHHHHHHHHHHh
Q 005979 498 TIPNKNQQTATYYEQDVREKLRA-LDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (666)
Q Consensus 498 l~~~~~~~~~~~~~~~l~~~l~~-~~~~~ii~vSAk~g~gv~~L~~~i~~~~~~ 550 (666)
+.+.... ..+... +.+.. ...++++++||++|.|++++|+.|.+.+..
T Consensus 176 l~~~~~~-~~~~~~----~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 176 LADAVGA-DIKKME----NDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp GHHHHTC-CHHHHH----HHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCchhHH-HHHHHH----HHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 8542111 112222 22222 235789999999999999999999876544
No 403
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=3.2e-11 Score=129.05 Aligned_cols=92 Identities=25% Similarity=0.291 Sum_probs=71.7
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC----------------CceEEEEEcCCCcccc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRKRA 434 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~----------------~~~~~liDTpG~~~~~ 434 (666)
..+|+++|.||||||||+|+|++.....++++|+||+++....+...+ +..+.+|||||+.+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 468999999999999999999998765899999999998887776532 1368999999987643
Q ss_pred ccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc
Q 005979 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (666)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~ 469 (666)
+.. ..+ ......+++.+|++++|+|+.+
T Consensus 100 s~~---e~L----~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STG---VGL----GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSS---SSS----CHHHHHHHTTCSEEEEEEECCC
T ss_pred cHH---HHH----HHHHHHHHHHHHHHHHHHhccc
Confidence 221 111 2345667899999999999863
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=125.31 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=93.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcc---cccCCCcceeeeEeEEEecCCCc--eEEEEEcCCCccccccccCCchhhHH
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRT---IVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~---~~~~~~gtT~d~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
++++++|.+|+|||||+|.|+|.... .....++.++..+...+.. .+. .+.++||+|+............+..+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-CccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46999999999999999999986421 1122345566544444432 222 68999999987531100000111222
Q ss_pred HHHHHHHHHh-------------hC--C-eEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHH
Q 005979 447 SVNRAFRAIR-------------RS--D-VVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYY 510 (666)
Q Consensus 447 ~~~~~~~~i~-------------~a--d-vvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~ 510 (666)
...+...++. .+ | +++||+|+..+++..|..+++.+. .++|+|+|+||+|...+.. ...+
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E---~~~l 197 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSE---LTKF 197 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHH---HHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHH---HHHH
Confidence 2222222221 12 2 477788999999999999999887 7899999999999876432 3445
Q ss_pred HHHHHHHHhcCCCCCEEEEeC
Q 005979 511 EQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 511 ~~~l~~~l~~~~~~~ii~vSA 531 (666)
...+++.+.. .+++++++|.
T Consensus 198 ~~~I~~~L~~-~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVS-NGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBT-TBCCCCCCC-
T ss_pred HHHHHHHHHH-cCCcEEecCC
Confidence 5566665654 4678888885
No 405
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.17 E-value=2.2e-11 Score=129.93 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=78.1
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEecCC----------------CceEEEEEcCCCccc
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRKR 433 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~----------------~~~~~liDTpG~~~~ 433 (666)
...+|+++|.||||||||+|+|++... .++++|++|.++....+...+ ...+.+|||||+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 347899999999999999999998764 788999999988877766422 225999999999764
Q ss_pred cccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHH
Q 005979 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (666)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~ 513 (666)
.+. ..........+++.+|++++|+|+++. .+ +.. +.....| +|++|.+... ......+.
T Consensus 100 as~-------~~glg~~~l~~ir~aD~Il~VvD~~~~---~~--i~~-v~~~~dP----~~di~~i~~E---l~l~d~~~ 159 (396)
T 2ohf_A 100 AHN-------GQGLGNAFLSHISACDGIFHLTRAFED---DD--ITH-VEGSVDP----IRDIEIIHEE---LQLKDEEM 159 (396)
T ss_dssp --------------CCHHHHHHHTSSSEEEEEEC------------------CTT----HHHHHHHHHH---HHHHHHHH
T ss_pred cch-------hhHHHHHHHHHHHhcCeEEEEEecCCC---cc--hhh-hcCCCCh----HHHHHHhhhh---hhhhhHHH
Confidence 321 111223466789999999999999752 11 111 2222334 4555543211 11111122
Q ss_pred HHHHHhcCCCCCEEEEe--CccCCCHHHHHHHHHHHHHhc
Q 005979 514 VREKLRALDWAPIVYST--AIAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 514 l~~~l~~~~~~~ii~vS--Ak~g~gv~~L~~~i~~~~~~~ 551 (666)
+.+.+.... ....| ++.+.+..++++.+...+.+.
T Consensus 160 ~~k~~~~~~---k~~~~~g~~~~~~~~~ll~~i~~~L~e~ 196 (396)
T 2ohf_A 160 IGPIIDKLE---KVAVRGGDKKLKPEYDIMCKVKSWVIDQ 196 (396)
T ss_dssp HHHHHHTTC---SCC--------CCHHHHHHHHHHHTTC-
T ss_pred HHHhhhhhh---hhhhcccchhhhhHHHHHHHHHHHHHhc
Confidence 333343333 22334 577788888988887776554
No 406
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=2.4e-12 Score=137.63 Aligned_cols=146 Identities=20% Similarity=0.180 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCchhHHHHHHhcC-----CcccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
.+|+++|.+|+|||||+|+|++. ....++..||+|++.....+ +..+.++||||+.......+.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~------ 233 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD------ 233 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh------
Confidence 36999999999999999999987 45778899999998766432 33589999999976432111110
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHH---HhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCC
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAI---EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i---~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~ 315 (666)
......+ ...+.++|++++...+.......++++.. .+.|+++++||+|.
T Consensus 234 -------------------------~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 234 -------------------------ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELT 286 (369)
T ss_dssp -------------------------TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSC
T ss_pred -------------------------HHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcc
Confidence 1112223 66899999999843211111111333433 46799999999998
Q ss_pred Cccch-hhHHHHH--hcCCCCeeecccCCCChH
Q 005979 316 PRKGI-MQVSEFW--SLGFSPLPISAISGTGTG 345 (666)
Q Consensus 316 ~~~~~-~~~~~~~--~~~~~~i~iSa~~g~Gi~ 345 (666)
..... ....+++ .+|..+.+.++....++.
T Consensus 287 ~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 287 VHRTKLEKADSLYANQLGELLSPPSKRYAAEFP 319 (369)
T ss_dssp EEEEEGGGHHHHHHHHBTTTBCSSCGGGTTTCC
T ss_pred cccccHHHHHHHHHHhcCCccCCCCchhhhhcc
Confidence 76432 2333343 356567777776655554
No 407
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.14 E-value=3.5e-11 Score=132.67 Aligned_cols=189 Identities=13% Similarity=0.172 Sum_probs=110.2
Q ss_pred CCceEEEecCCCCChhHHHHHHh------ccCcccccCC---Ccc--------e---eeeEeEE------------Ee--
Q 005979 370 RIPAIAIVGRPNVGKSSILNALV------GEDRTIVSPI---SGT--------T---RDAIDTE------------FT-- 415 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll------~~~~~~~~~~---~gt--------T---~d~~~~~------------~~-- 415 (666)
....|+++|.+||||||++++|+ |.....++.- ++. + ...+... +.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998 5554433321 110 0 0000000 00
Q ss_pred cCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcE-EEEEe
Q 005979 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGC-LIVVN 494 (666)
Q Consensus 416 ~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pv-Ilv~N 494 (666)
.+.+..++||||||...... .+... ...... +..+|.+++|+|++.+.. ....++.+.+. +|+ ++|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~------~l~~e-l~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED------SLFEE-MLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH------HHHHH-HHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccch------hHHHH-HHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 01567899999999864210 11111 111222 237999999999988754 44455555443 675 88999
Q ss_pred cccCCCCcchhhHHHHHHHHH---------HHHh-cCCCCCEEEEeCccCCC-HHHHHHHHHHHH----HhcccCCCchh
Q 005979 495 KWDTIPNKNQQTATYYEQDVR---------EKLR-ALDWAPIVYSTAIAGQS-VDKIIVAAEMVD----KERSRRLSTAT 559 (666)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~l~---------~~l~-~~~~~~ii~vSAk~g~g-v~~L~~~i~~~~----~~~~~~i~t~~ 559 (666)
|+|...... .... ....+. +.+. ...+.|.+++||++|.| +.+|++.+.+.. ++...++.++.
T Consensus 249 K~D~~~~~g-~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~ 326 (504)
T 2j37_W 249 KLDGHAKGG-GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ 326 (504)
T ss_dssp CTTSCCCCT-HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSG
T ss_pred CCccccchH-HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999864322 1111 111110 0000 01234556789999999 999999998773 23456676665
Q ss_pred --HHHHHHHHHHcc
Q 005979 560 --INQVVQEAVAFK 571 (666)
Q Consensus 560 --ln~~l~~~~~~~ 571 (666)
+|+++..+....
T Consensus 327 ~~l~d~~~~l~~~~ 340 (504)
T 2j37_W 327 FTLRDMYEQFQNIM 340 (504)
T ss_dssp GGGCCCHHHHHHCC
T ss_pred CCHHHHHHHHHHHH
Confidence 777887776643
No 408
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=2.9e-12 Score=136.83 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=85.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCC------cccccCCCCcccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGN------RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 237 (666)
.+|+++|.+|+|||||+|+|++.. ...++..||+|++.....+ +..+.++||||+.......+.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~----- 232 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVG----- 232 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSC-----
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhh-----
Confidence 469999999999999999999852 3557899999998776442 23489999999976332111110
Q ss_pred hhcccCCCCchhhHHHHHhccHHHHHHHHHHH---HHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCC
Q 005979 238 TTTIGMEGIPLATREAAVARMPSMIERQATAA---IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (666)
Q Consensus 238 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~---i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D 314 (666)
...... ....+.++|++++...+.......++++.. .+.|+++++||+|
T Consensus 233 --------------------------~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d 284 (368)
T 3h2y_A 233 --------------------------KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRL 284 (368)
T ss_dssp --------------------------HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTS
T ss_pred --------------------------HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCcc
Confidence 111111 256788999999843211111112333443 4689999999999
Q ss_pred CCccch-hhHHHHH--hcCCCCeeecccCC
Q 005979 315 SPRKGI-MQVSEFW--SLGFSPLPISAISG 341 (666)
Q Consensus 315 ~~~~~~-~~~~~~~--~~~~~~i~iSa~~g 341 (666)
...... ....+++ .+|..+++.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~ 314 (368)
T 3h2y_A 285 TIHRTKLEKADELYKNHAGDLLSPPTPEEL 314 (368)
T ss_dssp CEEEEEHHHHHHHHHHHBTTTBCSSCHHHH
T ss_pred ccccccHHHHHHHHHHHhCCccCCCchhhH
Confidence 876432 2233333 34555666665443
No 409
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=6.6e-10 Score=119.59 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcc---cccCCCCcccceeEEEEeecC--eeEEEEecCCcccccCCchhhhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 237 (666)
.+.|+|+|.+|+|||||+|.|+|.... .....++.+...........+ ..+.++||+|+..... ..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~------- 112 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQIN--KE------- 112 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CC--HH-------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccc--cc-------
Confidence 355999999999999999999997421 111223444433322222222 3689999999975211 10
Q ss_pred hhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHh-------------cc---EEEEEecCCCCCCHHHHHHHHHHHhhc
Q 005979 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SC---VIIFLVDGQAGLTAADEEIADWLRKNY 301 (666)
Q Consensus 238 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~-------------ad---~il~VvD~~~~~~~~d~~i~~~l~~~~ 301 (666)
.....+...+..++...+.. ++ +++||+|+.++++..|.++++.|.
T Consensus 113 ---------------~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~--- 174 (427)
T 2qag_B 113 ---------------DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD--- 174 (427)
T ss_dssp ---------------HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---
T ss_pred ---------------hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---
Confidence 00112233344444333322 22 588899999999999999988886
Q ss_pred CCCcEEEEeccCCCCccchhhH-----H-HHHhcCCCCeeecc
Q 005979 302 MDKFIILAVNKCESPRKGIMQV-----S-EFWSLGFSPLPISA 338 (666)
Q Consensus 302 ~~~p~ilv~NK~D~~~~~~~~~-----~-~~~~~~~~~i~iSa 338 (666)
.+.|+|+|+||+|......... . .+...|+.++.+|.
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 3789999999999876433211 1 12345778888885
No 410
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.06 E-value=3.7e-10 Score=124.59 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=94.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHh------cCCcccccCCCC---c--------ccc-ee-EE----------------EEe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPG---V--------TRD-RM-YG----------------RSF 207 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~~~---~--------t~~-~~-~~----------------~~~ 207 (666)
..+|+++|++||||||++++|. |.+...+...+. . ++. .. .. .+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998 776555443211 0 000 00 00 011
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC
Q 005979 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (666)
Q Consensus 208 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~ 287 (666)
+.+..+.||||||.... ...++.+ +.. +.. +..+|.++||+|+..+..
T Consensus 181 ~~~~DvvIIDTpG~~~~---~~~l~~e---------------------------l~~-~~~-~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQ---EDSLFEE---------------------------MLQ-VAN-AIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HTTCCEEEEEECCCCTT---CHHHHHH---------------------------HHH-HHH-HHCCSEEEEEEETTCCTT
T ss_pred HCCCcEEEEeCCCCccc---chhHHHH---------------------------HHH-HHh-hhcCceEEEEEecccccc
Confidence 25678999999998641 1122211 111 112 237899999999988754
Q ss_pred HHHHHHHHHHHhhcCCCcE-EEEeccCCCCccchhhHHHHHhcC-----------------C-CCeeecccCCCC-hHHH
Q 005979 288 AADEEIADWLRKNYMDKFI-ILAVNKCESPRKGIMQVSEFWSLG-----------------F-SPLPISAISGTG-TGEL 347 (666)
Q Consensus 288 ~~d~~i~~~l~~~~~~~p~-ilv~NK~D~~~~~~~~~~~~~~~~-----------------~-~~i~iSa~~g~G-i~eL 347 (666)
....++.+.. ..|+ ++|+||+|...............+ + +.+++|+.+|.| +.+|
T Consensus 229 --~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~L 303 (504)
T 2j37_W 229 --CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGL 303 (504)
T ss_dssp --HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTT
T ss_pred --HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHH
Confidence 3344555544 2564 899999998754321111111111 1 235689999999 9999
Q ss_pred HHHHHHH
Q 005979 348 LDLVCSE 354 (666)
Q Consensus 348 l~~I~~~ 354 (666)
++.+.+.
T Consensus 304 ie~i~e~ 310 (504)
T 2j37_W 304 IDKVNEL 310 (504)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 9998765
No 411
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.06 E-value=9.6e-11 Score=115.99 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCcEEEEeccCCCCccc---hhhHHHHH-h--cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 303 DKFIILAVNKCESPRKG---IMQVSEFW-S--LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 303 ~~p~ilv~NK~D~~~~~---~~~~~~~~-~--~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..|.++|+||+|+.... ......+. . .+.+++++||++|.|+++|++.|.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889999999986531 11222221 2 2457899999999999999999987664
No 412
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.05 E-value=2.5e-10 Score=119.59 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=81.5
Q ss_pred EEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc----------cCC-HHHHHHHH
Q 005979 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA----------CIT-EQDCRIAE 480 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~----------~~t-~~d~~i~~ 480 (666)
..+.. ++..+.+|||+|+++++.++ ..++++++++|||+|+++ .-+ .+...++.
T Consensus 154 ~~~~~-~~v~l~iwDtaGQe~~R~~w--------------~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 154 YDFVV-KDIPFHLIDVGGQRSERKXW--------------VSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp EEEES-SSCEEEEEECCSCHHHHHHH--------------HTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred EEEEe-eeeeeccccCCCcccccccH--------------HHHhccCCEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 34443 57789999999997654433 447899999999999982 222 23344666
Q ss_pred HHHH----hCCcEEEEEecccCCCCcc--------------hhhHHHHHHHHHHHH------hcC---------------
Q 005979 481 RIEQ----EGKGCLIVVNKWDTIPNKN--------------QQTATYYEQDVREKL------RAL--------------- 521 (666)
Q Consensus 481 ~i~~----~~~pvIlv~NK~Dl~~~~~--------------~~~~~~~~~~l~~~l------~~~--------------- 521 (666)
.+.. .+.|+||++||+|+...+. ....++..+-+.+.+ ...
T Consensus 219 ~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 298 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAV 298 (340)
T ss_dssp HHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC-------------
T ss_pred HHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhcccccccccccccc
Confidence 6654 3689999999999853210 001222233344444 111
Q ss_pred -CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 -DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 -~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
..+.+++|||+++.||..+|..+.+..
T Consensus 299 ~~~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 299 NEKVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 236789999999999999999988654
No 413
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.04 E-value=1.5e-09 Score=110.71 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=87.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCccccc-------CCCccee-eeEeEEEecCCC--ceEEEEEcCCCccccccccCCc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS-------PISGTTR-DAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGS 441 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~~~~-------~~~gtT~-d~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~ 441 (666)
++++++|++|+|||||+|.|+|......+ +.+.++. ..+...+.. .+ ..+.++|++|+...........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~-~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEE-GGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC-----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeec-CCCcCCceEEechhhhhhcccHHHHH
Confidence 68999999999999999999975432211 1112211 111111111 11 2689999999876432111112
Q ss_pred hhhHHHHHHHHHHHh--------------hCCeEEEEeec-cccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhh
Q 005979 442 TTEALSVNRAFRAIR--------------RSDVVALVIEA-MACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQT 506 (666)
Q Consensus 442 ~~e~~~~~~~~~~i~--------------~advvllViDa-~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~ 506 (666)
.+..+...+...++. .++++++++|. +.++...+..+++.+.+. +++|+|+||+|..... .
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~---e 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLE---E 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHH---H
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHH---H
Confidence 233333333322222 36999999995 478999999999999887 9999999999987643 2
Q ss_pred HHHHHHHHHHHHhcC
Q 005979 507 ATYYEQDVREKLRAL 521 (666)
Q Consensus 507 ~~~~~~~l~~~l~~~ 521 (666)
...+.+.+++.+...
T Consensus 158 ~~~~k~~i~~~l~~~ 172 (270)
T 3sop_A 158 KSEFKQRVRKELEVN 172 (270)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 334455566555544
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=9.1e-10 Score=114.33 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHHhccCccc-ccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEE
Q 005979 386 SILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALV 464 (666)
Q Consensus 386 SLin~ll~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllV 464 (666)
+|+++++... +. ....|.+. +.+...+. .+..+++||| +.++..++. .+++++|++|+|
T Consensus 32 sl~~~~~~~~-f~~~~~~pTiG-d~~~~~~~--~~~~~~iwD~--qer~~~l~~--------------~~~~~ad~vilV 91 (301)
T 1u0l_A 32 ERILCKLRGK-FRLQNLKIYVG-DRVEYTPD--ETGSGVIENV--LHRKNLLTK--------------PHVANVDQVILV 91 (301)
T ss_dssp CEEEEEECGG-GTTTTCCCCTT-CEEEEECC--CSSSEEEEEE--CCCSCEETT--------------TTEESCCEEEEE
T ss_pred cEEEEEEccc-ccccCCCCCCc-cEEEEEEc--CCCeEEEEEE--ccccceeec--------------cccccCCEEEEE
Confidence 5666666432 33 22333333 44443332 2338999999 777776653 278999999999
Q ss_pred eeccccC-CHHHH-HHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHHHH
Q 005979 465 IEAMACI-TEQDC-RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIV 542 (666)
Q Consensus 465 iDa~~~~-t~~d~-~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L~~ 542 (666)
+|++++. +.... +|+..+...++|+++|+||+||.+.... ++ .+.+.+.+... .++++|||++|.|++++|.
T Consensus 92 ~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v---~~-~~~~~~~~~~~--~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 92 VTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL---RK-VRELEEIYSGL--YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp ECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH---HH-HHHHHHHHTTT--SCEEECCTTTCTTHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH---HH-HHHHHHHHhhh--CcEEEEECCCCcCHHHHHH
Confidence 9999875 45433 4666666678999999999999653221 11 11222333322 7899999999999999998
Q ss_pred HHH
Q 005979 543 AAE 545 (666)
Q Consensus 543 ~i~ 545 (666)
.+.
T Consensus 166 ~l~ 168 (301)
T 1u0l_A 166 YLK 168 (301)
T ss_dssp HHS
T ss_pred Hhc
Confidence 774
No 415
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=122.60 Aligned_cols=90 Identities=26% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCe-----------------eEEEEecCCccccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVS 225 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~~ 225 (666)
..+|+|+|.||||||||+|+|++.. ..++++|++|.+...+.+.+.+. .+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999999999999987 47889999999999888776542 49999999997632
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC
Q 005979 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (666)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~ 284 (666)
..... +..++...++.+|++++|+|+..
T Consensus 101 s~~~g-------------------------------lg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQG-------------------------------LGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------------------------------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhH-------------------------------HHHHHHHHHHhcCeEEEEEecCC
Confidence 21111 12356678899999999999863
No 416
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.02 E-value=3e-10 Score=120.19 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=83.5
Q ss_pred EEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccC----------C-HHHHHHHH
Q 005979 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI----------T-EQDCRIAE 480 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~----------t-~~d~~i~~ 480 (666)
..+.. ++..+.+|||+|++++..++. .++++++++|||+|+++.- + .+...++.
T Consensus 186 ~~~~~-~~~~l~iwDt~GQe~~r~~w~--------------~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~ 250 (353)
T 1cip_A 186 THFTF-KDLHFKMFDVGGQRSERKKWI--------------HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250 (353)
T ss_dssp EEEEE-TTEEEEEEEECCSGGGGGGGG--------------GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred EEEee-CCeeEEEEeCCCchhhhHHHH--------------HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence 34443 577899999999998877653 2789999999999998731 1 23334666
Q ss_pred HHHH----hCCcEEEEEecccCCCCcc--------------hhhHHHHHHHHHHHHhc------CCCCCEEEEeCccCCC
Q 005979 481 RIEQ----EGKGCLIVVNKWDTIPNKN--------------QQTATYYEQDVREKLRA------LDWAPIVYSTAIAGQS 536 (666)
Q Consensus 481 ~i~~----~~~pvIlv~NK~Dl~~~~~--------------~~~~~~~~~~l~~~l~~------~~~~~ii~vSAk~g~g 536 (666)
.+.. .+.|+||++||+|+...+. ....++..+-+...+.. ...+++++|||++|.|
T Consensus 251 ~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~n 330 (353)
T 1cip_A 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKN 330 (353)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHH
T ss_pred HHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchh
Confidence 6654 3689999999999853210 01112222222222222 2356799999999999
Q ss_pred HHHHHHHHHHHHH
Q 005979 537 VDKIIVAAEMVDK 549 (666)
Q Consensus 537 v~~L~~~i~~~~~ 549 (666)
|.++|.++.+...
T Consensus 331 V~~vF~~v~~~i~ 343 (353)
T 1cip_A 331 VQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 417
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=1.1e-08 Score=109.98 Aligned_cols=169 Identities=18% Similarity=0.168 Sum_probs=101.6
Q ss_pred CCceEEEecCCCCChhHHHHHHhccCc----ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCccccccccCCchhhH
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVGEDR----TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~~~~----~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~ 445 (666)
....++++|++|+|||||+|.|+|... .+......+|+..+ .+.......+.++|+||+.... ...+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~------~~~~~ 139 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN------FPPDT 139 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS------CCHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH------HHHHH
Confidence 345899999999999999999998422 11111122233211 2222122368999999985321 11122
Q ss_pred HHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCC--C----cchhhHHHHHHHHHHHH-
Q 005979 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP--N----KNQQTATYYEQDVREKL- 518 (666)
Q Consensus 446 ~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~--~----~~~~~~~~~~~~l~~~l- 518 (666)
+.. + ..+...+..++ ++... ...++..+++.+...++|+++|+||.|+.- + -+......+.+.+++..
T Consensus 140 ~L~-~--~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 140 YLE-K--MKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHH-H--TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHH-H--cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 111 1 02344566555 77654 578888999999999999999999999741 0 00011222333333332
Q ss_pred ---hcC--CCCCEEEEeC--ccCCCHHHHHHHHHHHHHhc
Q 005979 519 ---RAL--DWAPIVYSTA--IAGQSVDKIIVAAEMVDKER 551 (666)
Q Consensus 519 ---~~~--~~~~ii~vSA--k~g~gv~~L~~~i~~~~~~~ 551 (666)
... ....+|.+|+ ..+.|+++|.+.|.+.+.+.
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 222 2457899999 67778999999998776543
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.93 E-value=8.9e-10 Score=117.01 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=76.7
Q ss_pred EEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc----------cCCH-HHHHHHH
Q 005979 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA----------CITE-QDCRIAE 480 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~----------~~t~-~d~~i~~ 480 (666)
..+.. ++..+.+|||||++++...+. .++++++++|||+|+++ .-+. ....++.
T Consensus 194 ~~~~~-~~~~l~i~Dt~Gq~~~r~~w~--------------~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 194 YDFEI-KNVPFKMVDVGGQRSERKRWF--------------ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp EEEEE-TTEEEEEEEECC-------CT--------------TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred EEeee-CCeEEEEEeccchhhhhhhHH--------------HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 34443 577999999999988766553 26789999999999987 2222 2344666
Q ss_pred HHHH----hCCcEEEEEecccCCCCc---------------chhhHHHHHHHHHHHHhc------CCCCCEEEEeCccCC
Q 005979 481 RIEQ----EGKGCLIVVNKWDTIPNK---------------NQQTATYYEQDVREKLRA------LDWAPIVYSTAIAGQ 535 (666)
Q Consensus 481 ~i~~----~~~pvIlv~NK~Dl~~~~---------------~~~~~~~~~~~l~~~l~~------~~~~~ii~vSAk~g~ 535 (666)
.+.. .+.|+||++||+|+...+ .....++..+-+...+.. ...+.+++|||++|.
T Consensus 259 ~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~ 338 (362)
T 1zcb_A 259 TIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE 338 (362)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred HHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence 6654 368999999999985311 001112222222222221 234678999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005979 536 SVDKIIVAAEMVDK 549 (666)
Q Consensus 536 gv~~L~~~i~~~~~ 549 (666)
||.++|..+.+...
T Consensus 339 nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 339 NIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999987653
No 419
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.91 E-value=1.2e-09 Score=117.11 Aligned_cols=122 Identities=12% Similarity=0.212 Sum_probs=81.2
Q ss_pred EEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccc----------cCCHHH-HHHHHH
Q 005979 413 EFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA----------CITEQD-CRIAER 481 (666)
Q Consensus 413 ~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~----------~~t~~d-~~i~~~ 481 (666)
.+.. ++..+.+|||+|+.++..++. .++++++++|||+|+++ .-+.++ ..|+..
T Consensus 211 ~~~~-~~v~l~iwDtaGQe~~r~~w~--------------~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~ 275 (402)
T 1azs_C 211 KFQV-DKVNFHMFDVGGQRDERRKWI--------------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS 275 (402)
T ss_dssp EEEE-TTEEEEEEEECCSGGGGGGGG--------------GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred Eeec-CCccceecccchhhhhhhhhH--------------hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHH
Confidence 4443 568999999999998877653 27899999999999987 333333 346666
Q ss_pred HHHh----CCcEEEEEecccCCCCcc---h------------------------h--hHHHHHHHHHHHHhc--------
Q 005979 482 IEQE----GKGCLIVVNKWDTIPNKN---Q------------------------Q--TATYYEQDVREKLRA-------- 520 (666)
Q Consensus 482 i~~~----~~pvIlv~NK~Dl~~~~~---~------------------------~--~~~~~~~~l~~~l~~-------- 520 (666)
+... +.|+|||+||+||...+. . . ..+....-+.+.+..
T Consensus 276 i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~ 355 (402)
T 1azs_C 276 IWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDG 355 (402)
T ss_dssp HHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccccc
Confidence 6542 589999999999843211 0 0 011111111222211
Q ss_pred CCCCCEEEEeCccCCCHHHHHHHHHHHHH
Q 005979 521 LDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 521 ~~~~~ii~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
...+.+++|||+++.||.++|..+.+...
T Consensus 356 ~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 356 RHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp SSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 12456789999999999999999876543
No 420
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.88 E-value=1.4e-09 Score=114.99 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc----------ccCCHH-HHHHHHHHHH---
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM----------ACITEQ-DCRIAERIEQ--- 484 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~----------~~~t~~-d~~i~~~i~~--- 484 (666)
...+.+|||+|+.++..++. .++++++++|+|+|++ +.-+.+ ...++..+..
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~--------------~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~ 247 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI--------------HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG--------------GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred ceeeEEEECCCchhhhHHHH--------------HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc
Confidence 35899999999998877653 2789999999999997 322222 2345665554
Q ss_pred -hCCcEEEEEecccCCCCcch--------------------hhHHHHHHHHHHHHhc-----------CCCCCEEEEeCc
Q 005979 485 -EGKGCLIVVNKWDTIPNKNQ--------------------QTATYYEQDVREKLRA-----------LDWAPIVYSTAI 532 (666)
Q Consensus 485 -~~~pvIlv~NK~Dl~~~~~~--------------------~~~~~~~~~l~~~l~~-----------~~~~~ii~vSAk 532 (666)
.+.|+|||+||+|+...+.. ...++..+-+.+.+.. .....+++|||+
T Consensus 248 ~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~ 327 (354)
T 2xtz_A 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327 (354)
T ss_dssp GSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred cCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence 36899999999998432110 0011111112222211 123457899999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 005979 533 AGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 533 ~g~gv~~L~~~i~~~~~ 549 (666)
+|.||.++|..+.+...
T Consensus 328 d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 328 DQKLVKKTFKLVDETLR 344 (354)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH
Confidence 99999999999986643
No 421
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.84 E-value=1.1e-08 Score=104.23 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCccccc-------CCCCcccceeEEEEee-cC--eeEEEEecCCcccccCCchhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-------DEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIME 233 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~-------~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~ 233 (666)
++|+++|.+|+|||||+|.|+|......+ +.+..+.....+.... .+ ..+.++||||+........ ..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-CWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-CSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-HHH
Confidence 47999999999999999999986422111 1111111111221111 11 3689999999975322111 000
Q ss_pred hhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHH--------------HHhccEEEEEecC-CCCCCHHHHHHHHHHH
Q 005979 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAA--------------IEESCVIIFLVDG-QAGLTAADEEIADWLR 298 (666)
Q Consensus 234 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~--------------i~~ad~il~VvD~-~~~~~~~d~~i~~~l~ 298 (666)
.+...+..++... +.++++.++++|. .+++.+.+.++++.|.
T Consensus 82 -----------------------~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~ 138 (270)
T 3sop_A 82 -----------------------PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS 138 (270)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH
Confidence 0111122222221 2336888999995 4899999999999997
Q ss_pred hhcCCCcEEEEeccCCCCccc
Q 005979 299 KNYMDKFIILAVNKCESPRKG 319 (666)
Q Consensus 299 ~~~~~~p~ilv~NK~D~~~~~ 319 (666)
+ . .++|+|+||+|.....
T Consensus 139 ~--~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 K--V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp T--T-SEEEEEETTGGGSCHH
T ss_pred h--c-CcEEEEEeccccCCHH
Confidence 7 3 8999999999988654
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.83 E-value=3e-08 Score=106.72 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=94.8
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCc----ccccCCCCcccceeEEEEeec-CeeEEEEecCCcccccCCchhhhhhhhhh
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNR----AIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~----~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 238 (666)
..|+|+|++|+|||||+|.|+|... .+......+|+.... .... ...+.++|+||+......-.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~~~~~~~~--------- 138 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFPPD--------- 138 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCCHH---------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhcccchHHHHH---------
Confidence 4799999999999999999999531 111111122322111 1111 13689999999864211101
Q ss_pred hcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCc-
Q 005979 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR- 317 (666)
Q Consensus 239 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~- 317 (666)
+.++. ..+...+..++ ++..+ ...++..+++.+.. .++|+++|+||.|..-
T Consensus 139 ---------------------~~L~~---~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 139 ---------------------TYLEK---MKFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp ---------------------HHHHH---TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHH
T ss_pred ---------------------HHHHH---cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCccccc
Confidence 11111 12344566665 77654 56778888888877 5899999999998641
Q ss_pred -----------c-chhh-HHHHH-----hcC--C-CCeeecc--cCCCChHHHHHHHHHHhhhh
Q 005979 318 -----------K-GIMQ-VSEFW-----SLG--F-SPLPISA--ISGTGTGELLDLVCSELKKV 358 (666)
Q Consensus 318 -----------~-~~~~-~~~~~-----~~~--~-~~i~iSa--~~g~Gi~eLl~~I~~~l~~~ 358 (666)
. .... ...+. ..| . .+|++|+ ..+.|+++|.+.|.+.+++.
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 1 1111 11121 223 2 5689999 66778999999999988754
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.81 E-value=1.9e-10 Score=124.91 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=103.0
Q ss_pred CceEEEecCCCCChhHHHHHHhccC------ccccc------------------------CCCcceeeeEeE---EEecC
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGED------RTIVS------------------------PISGTTRDAIDT---EFTGP 417 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~------~~~~~------------------------~~~gtT~d~~~~---~~~~~ 417 (666)
...|+++|.+|+||||+++.|.+.. ...++ +..++++++... .+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998531 11111 111134443211 11112
Q ss_pred CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCC-c-EEEEEec
Q 005979 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-G-CLIVVNK 495 (666)
Q Consensus 418 ~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~-p-vIlv~NK 495 (666)
.+..+.|+||||..... ............+..+|.+++|+|++.+. .....++.+. ... | ..+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~--------~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE--------KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSH--------HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCcccc--------HHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeC
Confidence 56689999999975420 01111111122223689999999998774 2222333332 245 6 8899999
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHh----c----------CCCCCEEEEeCccCCC-HHHHHHHHHHHHHh----cccCCC
Q 005979 496 WDTIPNKNQQTATYYEQDVREKLR----A----------LDWAPIVYSTAIAGQS-VDKIIVAAEMVDKE----RSRRLS 556 (666)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~l~~~l~----~----------~~~~~ii~vSAk~g~g-v~~L~~~i~~~~~~----~~~~i~ 556 (666)
+|.... ... .. .+...+. + ..+.|..++||..|.| +..|++.+.+.+.+ ...++.
T Consensus 248 ~D~~~~-~g~-~l----~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~~~~~~k~~ 321 (432)
T 2v3c_C 248 LDGSAK-GGG-AL----SAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKTEESIDAIM 321 (432)
T ss_dssp SSSCST-THH-HH----HHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSSSTTHHHHC
T ss_pred CCCccc-hHH-HH----HHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 998532 111 11 1122111 0 0233445678889998 88888887665543 234444
Q ss_pred chh--HHHHHHHHHHc
Q 005979 557 TAT--INQVVQEAVAF 570 (666)
Q Consensus 557 t~~--ln~~l~~~~~~ 570 (666)
++. +|+++..+...
T Consensus 322 ~~~~~~~~~~~~l~~~ 337 (432)
T 2v3c_C 322 RGKFTLNELMTQLEAI 337 (432)
T ss_dssp CSCCHHHHHHHHTTTT
T ss_pred cCCCCHHHHHHHHHHH
Confidence 554 78888776553
No 424
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.80 E-value=4.9e-09 Score=117.44 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=68.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEeEEEe------cCCCceEEEEEcCCCccccccccCCchhh
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT------GPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~~~~~------~~~~~~~~liDTpG~~~~~~~~~~~~~~e 444 (666)
..+|+|+|.||||||||+|+|+|..... +.+++|++.....+. ...+..+.|+||||+.+...... .....
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~-~~~~~ 114 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDN-QNDSW 114 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCC-TTHHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccch-hHHHH
Confidence 4689999999999999999999986432 555666554433332 23567899999999986543111 01111
Q ss_pred HHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH
Q 005979 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (666)
Q Consensus 445 ~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~ 484 (666)
.+ ++..+- ++ ++|||+..+++.+++.++..+.+
T Consensus 115 ~f----ala~ll-ss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IF----ALAVLL-SS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HH----HHHHHH-CS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HH----HHHHHh-cC--eEEEECCCCccHHHHHHHHHHHH
Confidence 11 122222 33 67889988999999987766554
No 425
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.78 E-value=5.8e-09 Score=108.79 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=82.9
Q ss_pred EEEecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeecc-------c---cCC-HHHHHHHH
Q 005979 412 TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM-------A---CIT-EQDCRIAE 480 (666)
Q Consensus 412 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~-------~---~~t-~~d~~i~~ 480 (666)
..+.. ++..+.+|||+|+++++.++. .++++++++|+|+|.+ + .-+ .+...++.
T Consensus 160 ~~~~~-~~v~l~iwDtgGQe~~R~~w~--------------~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~ 224 (327)
T 3ohm_A 160 YPFDL-QSVIFRMVDVGGQRSERRKWI--------------HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224 (327)
T ss_dssp EEEEE-TTEEEEEEEECCSHHHHTTGG--------------GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred EEEEe-eceeeEEEEcCCchhHHHHHH--------------HHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence 34443 678999999999988766653 3789999999999776 2 111 22344666
Q ss_pred HHHH----hCCcEEEEEecccCCCCcc---------------hhhHHHHHHHHHHHHhc-----CCCCCEEEEeCccCCC
Q 005979 481 RIEQ----EGKGCLIVVNKWDTIPNKN---------------QQTATYYEQDVREKLRA-----LDWAPIVYSTAIAGQS 536 (666)
Q Consensus 481 ~i~~----~~~pvIlv~NK~Dl~~~~~---------------~~~~~~~~~~l~~~l~~-----~~~~~ii~vSAk~g~g 536 (666)
.+.. .+.|+||++||+|+...+- ....++..+-+.+.+.. ...+.+++|||+++.|
T Consensus 225 ~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 225 TIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN 304 (327)
T ss_dssp HHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHH
T ss_pred HHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHH
Confidence 5554 3689999999999854220 01122222233333332 2346789999999999
Q ss_pred HHHHHHHHHHHHHh
Q 005979 537 VDKIIVAAEMVDKE 550 (666)
Q Consensus 537 v~~L~~~i~~~~~~ 550 (666)
|..+|..+.+..-.
T Consensus 305 V~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 305 IRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 426
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.72 E-value=1.2e-07 Score=102.56 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=84.9
Q ss_pred CCceEEEecCCCCChhHHHHHHhc------cCcccccC----------------CCcceeeeEeE-------------EE
Q 005979 370 RIPAIAIVGRPNVGKSSILNALVG------EDRTIVSP----------------ISGTTRDAIDT-------------EF 414 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll~------~~~~~~~~----------------~~gtT~d~~~~-------------~~ 414 (666)
++..|+++|.+|+||||+++.|.. .....+.. ..+........ ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999872 22222111 00111100000 00
Q ss_pred ecCCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEe
Q 005979 415 TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVN 494 (666)
Q Consensus 415 ~~~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~N 494 (666)
. ..+..+.|+||||..... .+...-.+.+.....+|.++||+|++.+. +....++.+.+...+..+|+|
T Consensus 179 ~-~~~~DvVIIDTaGrl~~d--------~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlT 247 (443)
T 3dm5_A 179 K-SKGVDIIIVDTAGRHKED--------KALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVT 247 (443)
T ss_dssp H-HTTCSEEEEECCCCSSCC--------HHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEE
T ss_pred H-hCCCCEEEEECCCcccch--------HHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEE
Confidence 0 134689999999964321 11111122334455789999999998763 334455666655566778999
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHH
Q 005979 495 KWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (666)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~ 538 (666)
|+|...... . .. .+....+.|+.+++. |++++
T Consensus 248 KlD~~~~gG-~--------~l-s~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 248 KLDGSAKGG-G--------AL-SAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp CCSSCSSHH-H--------HH-HHHHTTCCCEEEEEC--SSSTT
T ss_pred CCCCccccc-H--------HH-HHHHHHCCCEEEEEc--CCChH
Confidence 999854311 1 01 112235789999986 77665
No 427
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.72 E-value=1.5e-08 Score=113.47 Aligned_cols=103 Identities=24% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEee-------cCeeEEEEecCCcccccCCchhhhhhh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-------GEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~i~liDTpG~~~~~~~~~~~~~~~ 235 (666)
..+|+|+|.||||||||+|+|+|....+ +.+++|+++..+...| .+..+.|+||||+..........
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~---- 111 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQN---- 111 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTT----
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhH----
Confidence 4689999999999999999999987433 5666666666555444 46789999999998643211100
Q ss_pred hhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHh
Q 005979 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK 299 (666)
Q Consensus 236 ~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~ 299 (666)
.....+... -.++ ++|+|+..+++..+..++.++..
T Consensus 112 -------------------------~~~~fala~-llss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 112 -------------------------DSWIFALAV-LLSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp -------------------------HHHHHHHHH-HHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred -------------------------HHHHHHHHH-HhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 000111122 2244 46677777899998887776654
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.67 E-value=1.6e-08 Score=109.90 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC------CcccccCCC------------------------Cccccee----EEEEee
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEP------------------------GVTRDRM----YGRSFW 208 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~------~~~~~~~~~------------------------~~t~~~~----~~~~~~ 208 (666)
...|+++|.+|+||||++++|.+. +...+...+ +.+++.. .....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999752 322222111 1222221 000113
Q ss_pred cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH
Q 005979 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (666)
Q Consensus 209 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~ 288 (666)
.+..+++|||||.... ...++.+ +. ....+..+|.++||+|+..+..
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~---------------------------l~--~i~~~~~~d~vllVvda~~g~~- 225 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEE---------------------------MK--QIKEITNPDEIILVIDGTIGQQ- 225 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHH---------------------------HH--HTTSSSCCSEEEEEEEGGGGGG-
T ss_pred hCCCEEEEcCCCCccc---cHHHHHH---------------------------HH--HHHHHhcCcceeEEeeccccHH-
Confidence 5678999999998641 1112111 10 0112236899999999976642
Q ss_pred HHHHHHHHHHhhcCCC-c-EEEEeccCCCCccchhhHHHHHhcCCC------------------CeeecccCCCC-hHHH
Q 005979 289 ADEEIADWLRKNYMDK-F-IILAVNKCESPRKGIMQVSEFWSLGFS------------------PLPISAISGTG-TGEL 347 (666)
Q Consensus 289 ~d~~i~~~l~~~~~~~-p-~ilv~NK~D~~~~~~~~~~~~~~~~~~------------------~i~iSa~~g~G-i~eL 347 (666)
.....+.+.. .. | ..+|+||+|...............+.+ ..++|+..|.| +..|
T Consensus 226 -~~~~~~~~~~---~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L 301 (432)
T 2v3c_C 226 -AGIQAKAFKE---AVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESL 301 (432)
T ss_dssp -HHHHHHHHHT---TSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTT
T ss_pred -HHHHHHHHhh---cccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHH
Confidence 2233333332 34 5 889999999865332111112223322 23567778887 7777
Q ss_pred HHHHHHHhh
Q 005979 348 LDLVCSELK 356 (666)
Q Consensus 348 l~~I~~~l~ 356 (666)
++.+.+.++
T Consensus 302 ~e~~~~~~~ 310 (432)
T 2v3c_C 302 LEKAEDMVD 310 (432)
T ss_dssp SSTTTSCSC
T ss_pred HHHHHHHHH
Confidence 777655544
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=1.8e-07 Score=101.19 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHh------cCCcccccCCCCcc------------cceeEE-----------------EEe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT------------RDRMYG-----------------RSF 207 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~~~~t------------~~~~~~-----------------~~~ 207 (666)
...|+++|.+|+||||++.+|. |.+...+...+... ...... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999997 44433332111100 000000 001
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC
Q 005979 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (666)
Q Consensus 208 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~ 287 (666)
..+..++||||||... ....++.++ . ....+..+|.++||+|+..+.
T Consensus 180 ~~~~DvVIIDTaGrl~---~d~~lm~el----------------------------~-~i~~~~~pd~vlLVvDA~~gq- 226 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHK---EDKALIEEM----------------------------K-QISNVIHPHEVILVIDGTIGQ- 226 (443)
T ss_dssp HTTCSEEEEECCCCSS---CCHHHHHHH----------------------------H-HHHHHHCCSEEEEEEEGGGGG-
T ss_pred hCCCCEEEEECCCccc---chHHHHHHH----------------------------H-HHHHhhcCceEEEEEeCCCch-
Confidence 1347899999999754 222232221 1 113344689999999998753
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHH
Q 005979 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (666)
Q Consensus 288 ~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eL 347 (666)
.....++.+.+ .-.+..+|+||+|...............+.++..++. |+++++|
T Consensus 227 -~a~~~a~~f~~--~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 227 -QAYNQALAFKE--ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp -GHHHHHHHHHH--SCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred -hHHHHHHHHHh--hCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 23344555554 2456779999999876543222223456777777774 8777664
No 430
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.50 E-value=1.9e-07 Score=95.74 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=68.4
Q ss_pred HHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEE
Q 005979 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (666)
Q Consensus 448 ~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii 527 (666)
..++.+.+..+|++++|+|+.++.+..+..+.+++ .++|+++|+||+||.+.. ..+ ...+.+.. .+.+++
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~---~~~----~~~~~~~~-~g~~~i 83 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAA---VTQ----QWKEHFEN-QGIRSL 83 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHH---HHH----HHHHHHHT-TTCCEE
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHH---HHH----HHHHHHHh-cCCcEE
Confidence 46778899999999999999998776543344443 579999999999997631 111 22223322 246899
Q ss_pred EEeCccCCCHHHHHHHHHHHHH
Q 005979 528 YSTAIAGQSVDKIIVAAEMVDK 549 (666)
Q Consensus 528 ~vSAk~g~gv~~L~~~i~~~~~ 549 (666)
++||++|.|+++|++.+.+...
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999998887754
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.49 E-value=1.4e-07 Score=97.72 Aligned_cols=87 Identities=16% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHhhCCeEEEEeeccccC-CHHH-HHHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeC
Q 005979 454 AIRRSDVVALVIEAMACI-TEQD-CRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (666)
Q Consensus 454 ~i~~advvllViDa~~~~-t~~d-~~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSA 531 (666)
+++++|++++|+|++++. +... .+|+..+...++|+|+|+||+||.+...... .+.+.+.+... +.+++++||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~----~~~~~~~~~~~-g~~~~~~SA 150 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE----LERWISIYRDA-GYDVLKVSA 150 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH----HHHHHHHHHHT-TCEEEECCT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH----HHHHHHHHHHC-CCeEEEEEC
Confidence 689999999999999874 6554 2466667778999999999999975321110 11222223333 468999999
Q ss_pred ccCCCHHHHHHHHH
Q 005979 532 IAGQSVDKIIVAAE 545 (666)
Q Consensus 532 k~g~gv~~L~~~i~ 545 (666)
++|.|+++|+..+.
T Consensus 151 ~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 151 KTGEGIDELVDYLE 164 (302)
T ss_dssp TTCTTHHHHHHHTT
T ss_pred CCCCCHHHHHhhcc
Confidence 99999999998764
No 432
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.46 E-value=7.3e-08 Score=97.76 Aligned_cols=58 Identities=38% Similarity=0.568 Sum_probs=40.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhcCCcccccCCCCcccceeEEEEeecCeeEEEEecCCcccc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 224 (666)
.+|+++|.||||||||+|+|++...+.+++.+|+|+..+... .+..+.||||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 689999999999999999999988777889999998875422 2457899999999863
No 433
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.41 E-value=3.3e-07 Score=99.06 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHh------cCCcccccCC----------------CCccc-------cee------EEEEe
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDE----------------PGVTR-------DRM------YGRSF 207 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~----------------~~~t~-------~~~------~~~~~ 207 (666)
...|+++|.+|+||||++..|. |.+...+... .++.. +.. .....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 3489999999999999999987 4433222110 01100 000 00011
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCC
Q 005979 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (666)
Q Consensus 208 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~ 287 (666)
..+..+++|||||..... ....++.++ ....+ ....+.++||+|+..+-
T Consensus 177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el----------------------------~~i~~-~~~pd~vlLVlDa~~gq- 225 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-EETKLLEEM----------------------------KEMYD-VLKPDDVILVIDASIGQ- 225 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-CTTHHHHHH----------------------------HHHHH-HHCCSEEEEEEEGGGGG-
T ss_pred hcCCCEEEEECCCCcccc-CCHHHHHHH----------------------------HHHHH-hhCCcceEEEEeCccch-
Confidence 236789999999974311 122222221 11122 23579999999998652
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHH
Q 005979 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (666)
Q Consensus 288 ~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~e 346 (666)
.....++.+.+. -.+..+|+||+|...............+.++..++. |+++++
T Consensus 226 -~a~~~a~~f~~~--~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 226 -KAYDLASRFHQA--SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKIDE 279 (433)
T ss_dssp -GGHHHHHHHHHH--CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred -HHHHHHHHHhcc--cCCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChHh
Confidence 233455555542 356789999999865432222223345777777774 777653
No 434
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=3.2e-06 Score=91.36 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=81.5
Q ss_pred CceEEEecCCCCChhHHHHHHhc------cCccccc----------------CCCcceeeeEeE----------EEec--
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG------EDRTIVS----------------PISGTTRDAIDT----------EFTG-- 416 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~------~~~~~~~----------------~~~gtT~d~~~~----------~~~~-- 416 (666)
...|+++|.+|+||||++..|.. .....+. ...|........ .+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45688999999999999999872 2221111 001111100000 0000
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecc
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKW 496 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~ 496 (666)
..+..+.|+||||...+.. . ...- ....... ..-.+|.+++|+|++.+ .+...+++.+.+.-.+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~-d---~~lm-~el~~i~-~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGE-E---TKLL-EEMKEMY-DVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCC-T---THHH-HHHHHHH-HHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccC-C---HHHH-HHHHHHH-HhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecc
Confidence 1356899999999633100 0 0011 1111222 23357999999999876 233445666666556788999999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHH
Q 005979 497 DTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (666)
Q Consensus 497 Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~ 538 (666)
|..... ... . .+.. ..+.|+.+++. |++++
T Consensus 249 D~~a~~-G~a----l-s~~~----~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 249 DGTAKG-GGA----L-SAVV----ATGATIKFIGT--GEKID 278 (433)
T ss_dssp GGCSCH-HHH----H-HHHH----HHTCEEEEEEC--CSSSS
T ss_pred cccccc-hHH----H-HHHH----HHCCCEEEEEC--CCChH
Confidence 985321 111 1 1111 12689999986 77764
No 435
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.30 E-value=4.3e-07 Score=95.94 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=79.2
Q ss_pred ccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEE
Q 005979 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (666)
Q Consensus 198 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il 277 (666)
|.......+.+++..+.+|||+|.......+ ...++.++++|
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w--------------------------------------~~yf~~a~~iI 221 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKW--------------------------------------IHCFEGVTAII 221 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGG--------------------------------------GGGCTTCSEEE
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHH--------------------------------------HHHHhcCCEEE
Confidence 3334455566778899999999987643222 24467899999
Q ss_pred EEecCCCCCC--------HHHHHHHHH---HHh--hcCCCcEEEEeccCCCCccc------------------hhhHHHH
Q 005979 278 FLVDGQAGLT--------AADEEIADW---LRK--NYMDKFIILAVNKCESPRKG------------------IMQVSEF 326 (666)
Q Consensus 278 ~VvD~~~~~~--------~~d~~i~~~---l~~--~~~~~p~ilv~NK~D~~~~~------------------~~~~~~~ 326 (666)
||+|.+..-+ ..-.++..+ +.. ...+.|+++|+||+|+.... ......+
T Consensus 222 fV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~ 301 (353)
T 1cip_A 222 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY 301 (353)
T ss_dssp EEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred EEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence 9999875210 111222333 322 23578999999999985321 1122222
Q ss_pred Hh------------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 327 WS------------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 327 ~~------------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.. .++.++.+||++|.|+.++++.+.+.+..
T Consensus 302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 21 23467899999999999999999877653
No 436
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.29 E-value=4.6e-07 Score=96.06 Aligned_cols=118 Identities=18% Similarity=0.117 Sum_probs=72.6
Q ss_pred eeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEe
Q 005979 201 RMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLV 280 (666)
Q Consensus 201 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~Vv 280 (666)
.....+.+++..+.+|||+|........ ...+..++++|||+
T Consensus 191 i~~~~~~~~~~~l~i~Dt~Gq~~~r~~w--------------------------------------~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 191 IHEYDFEIKNVPFKMVDVGGQRSERKRW--------------------------------------FECFDSVTSILFLV 232 (362)
T ss_dssp EEEEEEEETTEEEEEEEECC-------C--------------------------------------TTSCTTCCEEEEEE
T ss_pred eEEEEeeeCCeEEEEEeccchhhhhhhH--------------------------------------HHHhCCCCEEEEEE
Confidence 3344556778899999999996533222 23457899999999
Q ss_pred cCCCC---------CCHH--HHHHHHHHHh--hcCCCcEEEEeccCCCCcc-------------------chhhHHHHH-
Q 005979 281 DGQAG---------LTAA--DEEIADWLRK--NYMDKFIILAVNKCESPRK-------------------GIMQVSEFW- 327 (666)
Q Consensus 281 D~~~~---------~~~~--d~~i~~~l~~--~~~~~p~ilv~NK~D~~~~-------------------~~~~~~~~~- 327 (666)
|.+.- .... -..++..+.. ...+.|+|+|+||+|+..+ .......+.
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~ 312 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 312 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHH
Confidence 98862 1111 1222333322 2357899999999997531 111222222
Q ss_pred -----------hcCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 328 -----------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 328 -----------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..++.++++||++|.|+.++++.+.+.+.
T Consensus 313 ~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 313 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 12345688999999999999999887664
No 437
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=1.9e-06 Score=88.91 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=81.0
Q ss_pred CeEEEEcCCCCchhHHHHHHh------cCCcccccCCCCcc--------------cceeEE---------------EEee
Q 005979 164 PRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT--------------RDRMYG---------------RSFW 208 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~------~~~~~~~~~~~~~t--------------~~~~~~---------------~~~~ 208 (666)
..|+++|.+|+||||++..|. |.+...+...+... .+...+ ....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999986 33322222111100 000000 0011
Q ss_pred cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCH
Q 005979 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (666)
Q Consensus 209 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~ 288 (666)
.+..+.+|||||..... ....++.++ . . ...+..+|.+++|+|+..+ .
T Consensus 179 ~~~D~ViIDTpg~~~~~-~~~~l~~el---------------------------~-~-i~~~~~~d~vllVvda~~g--~ 226 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYG-EEAALLEEM---------------------------K-N-IYEAIKPDEVTLVIDASIG--Q 226 (297)
T ss_dssp TTCSEEEEECCCSCCTT-CHHHHHHHH---------------------------H-H-HHHHHCCSEEEEEEEGGGG--G
T ss_pred CCCCEEEEeCCCCcccc-cHHHHHHHH---------------------------H-H-HHHHhcCCEEEEEeeCCch--H
Confidence 45679999999986410 111122111 1 1 1234578999999999754 2
Q ss_pred HHHHHHHHHHhhcCCCc-EEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHH
Q 005979 289 ADEEIADWLRKNYMDKF-IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (666)
Q Consensus 289 ~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eL 347 (666)
.....++.+.+ ..+ ..+|+||+|...............+.++..++ .|+++++|
T Consensus 227 ~~~~~~~~~~~---~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 227 KAYDLASKFNQ---ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GHHHHHHHHHH---TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred HHHHHHHHHHh---hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 22333444443 345 78899999976433211222334566666665 57777654
No 438
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=1.3e-05 Score=82.72 Aligned_cols=147 Identities=22% Similarity=0.270 Sum_probs=82.2
Q ss_pred CceEEEecCCCCChhHHHHHHhc------cCcccccCC---C-------------cce-------eeeEe---EEEec--
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG------EDRTIVSPI---S-------------GTT-------RDAID---TEFTG-- 416 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~------~~~~~~~~~---~-------------gtT-------~d~~~---~~~~~-- 416 (666)
...++++|.+|+||||+++.|.+ .....+..- + +.. .++.. ..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999873 221111111 0 000 00000 00000
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHH--HHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEE
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV--NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVV 493 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~--~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~ 493 (666)
.++..+.|+||||..... ...... .+.......+|.+++|+|+..+ .+....++.+.+ ..+ ..+|+
T Consensus 178 ~~~~D~ViIDTpg~~~~~--------~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVl 246 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG--------EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIII 246 (297)
T ss_dssp HTTCSEEEEECCCSCCTT--------CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEE
T ss_pred hCCCCEEEEeCCCCcccc--------cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEE
Confidence 145689999999975410 011111 1112345579999999999865 333444554444 466 77899
Q ss_pred ecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHH
Q 005979 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L 540 (666)
||+|..... .. + ..+....+.|+.+++ +|+++++|
T Consensus 247 nk~D~~~~~--g~-------~-~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 247 TKMDGTAKG--GG-------A-LSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp ECGGGCTTH--HH-------H-HHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred eCCCCCcch--HH-------H-HHHHHHHCcCEEEEe--CCCChhhc
Confidence 999975321 11 1 112333468999887 68887654
No 439
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.11 E-value=8.7e-06 Score=92.39 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhh-CCeEEEEeeccccC-CHHHHHHHHHHHHhCCcEEEEEeccc
Q 005979 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR-SDVVALVIEAMACI-TEQDCRIAERIEQEGKGCLIVVNKWD 497 (666)
Q Consensus 420 ~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~-advvllViDa~~~~-t~~d~~i~~~i~~~~~pvIlv~NK~D 497 (666)
..+.|+|.||+.+...-. ...............++.. ..++++++++.... +....++++.+...+.+.|+|+||+|
T Consensus 147 p~LlLlDePGi~~~~t~~-LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGN-QPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CCEEEEECCC------CC-SSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CceeEeeCCCccccccCC-CCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 368999999987532110 0011122222223333444 35666666654332 33456677777777899999999999
Q ss_pred CCCC
Q 005979 498 TIPN 501 (666)
Q Consensus 498 l~~~ 501 (666)
++..
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9754
No 440
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=1.4e-05 Score=90.63 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHhcCC
Q 005979 161 HLLPRVAIVGRPNVGKSALFNRLVGGN 187 (666)
Q Consensus 161 ~~~~~V~ivG~~n~GKSsL~n~l~~~~ 187 (666)
-..|.|+|+|.+|+|||||++.|.|..
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 346789999999999999999999973
No 441
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.97 E-value=7e-06 Score=87.83 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=75.8
Q ss_pred eeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEe
Q 005979 201 RMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLV 280 (666)
Q Consensus 201 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~Vv 280 (666)
.....+.+++..+.+|||+|...+.... ...++.++++|||+
T Consensus 207 i~~~~~~~~~v~l~iwDtaGQe~~r~~w--------------------------------------~~yf~~a~~iIfV~ 248 (402)
T 1azs_C 207 IFETKFQVDKVNFHMFDVGGQRDERRKW--------------------------------------IQCFNDVTAIIFVV 248 (402)
T ss_dssp EEEEEEEETTEEEEEEEECCSGGGGGGG--------------------------------------GGGTTTCCEEEEEE
T ss_pred eEEEEeecCCccceecccchhhhhhhhh--------------------------------------HhhccCCCEEEEEE
Confidence 3344556778899999999997643222 24467899999999
Q ss_pred cCCC----------CCCHHH-HHHHHHHHh--hcCCCcEEEEeccCCCCccch---------------------------
Q 005979 281 DGQA----------GLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKGI--------------------------- 320 (666)
Q Consensus 281 D~~~----------~~~~~d-~~i~~~l~~--~~~~~p~ilv~NK~D~~~~~~--------------------------- 320 (666)
|.+. .-+-.+ ..+++.+.. ...+.|+++|+||+|+.....
T Consensus 249 dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~ 328 (402)
T 1azs_C 249 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEP 328 (402)
T ss_dssp ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCT
T ss_pred ECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccccccccc
Confidence 9875 111111 122232322 135789999999999743211
Q ss_pred ------hhHHHH-----Hh---------cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 321 ------MQVSEF-----WS---------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 321 ------~~~~~~-----~~---------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
.....| .. .++.++.+||+++.|+.+++..+.+.+..
T Consensus 329 g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 329 GEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 111112 11 12346789999999999999998776643
No 442
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.97 E-value=7.5e-06 Score=78.78 Aligned_cols=92 Identities=11% Similarity=-0.083 Sum_probs=58.2
Q ss_pred HHHHhhCCeEEEEeeccccCCHHHHHH----HHHHHH----hCCcEEEEEecc-cCCCCcchhhHHHHHHHHHH-HHhcC
Q 005979 452 FRAIRRSDVVALVIEAMACITEQDCRI----AERIEQ----EGKGCLIVVNKW-DTIPNKNQQTATYYEQDVRE-KLRAL 521 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t~~d~~i----~~~i~~----~~~pvIlv~NK~-Dl~~~~~~~~~~~~~~~l~~-~l~~~ 521 (666)
..|+.++|++|||||+++........- .+.+.+ .+.|++|.+||. |+...-. ..++.+.+.- .+ .
T Consensus 120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams---~~EI~e~L~L~~l-~- 194 (227)
T 3l82_B 120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLAHELHLNLL-N- 194 (227)
T ss_dssp HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC---HHHHHHHTTGGGG-C-
T ss_pred HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC---HHHHHHHcCCcCC-C-
Confidence 458899999999999987522112111 222222 368999999995 6743321 1222222211 11 1
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
....|..|||++|.|+.+-++++.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 345699999999999999999987543
No 443
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.96 E-value=1.8e-05 Score=85.83 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcC---------------CcccccCCCCcccceeEEEEeec-----------CeeEEEE
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGG---------------NRAIVVDEPGVTRDRMYGRSFWG-----------EHEFMLV 216 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~i~li 216 (666)
...|+|+|.+++|||+|+|.|+|. .....+ ..++|+.+..|...|. ...++++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 457999999999999999999974 212222 2235666666766664 2569999
Q ss_pred ecCCccc
Q 005979 217 DTGGVLN 223 (666)
Q Consensus 217 DTpG~~~ 223 (666)
||||+.+
T Consensus 146 DTeG~~~ 152 (447)
T 3q5d_A 146 DTQGTFD 152 (447)
T ss_dssp EEECCCS
T ss_pred cCCcccc
Confidence 9999975
No 444
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.90 E-value=1.1e-05 Score=84.01 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=76.7
Q ss_pred ceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEE
Q 005979 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (666)
Q Consensus 200 ~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~V 279 (666)
......+.+++..+.+|||+|....... +..+++.++++|||
T Consensus 156 Gi~~~~~~~~~v~l~iwDtgGQe~~R~~--------------------------------------w~~yf~~~~~iIfV 197 (327)
T 3ohm_A 156 GIIEYPFDLQSVIFRMVDVGGQRSERRK--------------------------------------WIHCFENVTSIMFL 197 (327)
T ss_dssp SEEEEEEEETTEEEEEEEECCSHHHHTT--------------------------------------GGGGCSSCSEEEEE
T ss_pred eEEEEEEEeeceeeEEEEcCCchhHHHH--------------------------------------HHHHhCCCCEEEEE
Confidence 3445556778899999999999763332 22456789999999
Q ss_pred ecCC-------CC--CCHHHHHHHHHHHh-----hcCCCcEEEEeccCCCCccc-------------------hhhHHHH
Q 005979 280 VDGQ-------AG--LTAADEEIADWLRK-----NYMDKFIILAVNKCESPRKG-------------------IMQVSEF 326 (666)
Q Consensus 280 vD~~-------~~--~~~~d~~i~~~l~~-----~~~~~p~ilv~NK~D~~~~~-------------------~~~~~~~ 326 (666)
+|.+ +. .... .+...++.. ...+.|+++++||+|+..+. ......+
T Consensus 198 ~dls~ydq~l~d~~~~nr~-~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~f 276 (327)
T 3ohm_A 198 VALSEYDQVLVESDNENRM-EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 276 (327)
T ss_dssp EEGGGGGCBCSSCTTSBHH-HHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHH
T ss_pred EECccccccccccccHhHH-HHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHH
Confidence 9754 11 1111 122233222 23578999999999975421 1122222
Q ss_pred H-----------hcCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 327 W-----------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 327 ~-----------~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
. ..++.++.+||+.+.|+..++..+.+.+-.
T Consensus 277 i~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 277 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 1 123456889999999999999998876653
No 445
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.87 E-value=1.1e-05 Score=85.21 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=67.6
Q ss_pred CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCC-----
Q 005979 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA----- 284 (666)
Q Consensus 210 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~----- 284 (666)
...+.+|||+|........ ...++.++++|||+|.+.
T Consensus 182 ~v~l~iwDtaGQe~~r~~~--------------------------------------~~y~~~~~~iI~v~dis~ydq~l 223 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKW--------------------------------------IHLFEGVTAVIFCAAISEYDQTL 223 (354)
T ss_dssp --EEEEEEECCSTTGGGGT--------------------------------------GGGCTTEEEEEEEEEGGGTTCBC
T ss_pred ceeeEEEECCCchhhhHHH--------------------------------------HHHhCCCCEEEEEEECccccccc
Confidence 3679999999997643322 234678999999999861
Q ss_pred ----CCCHHH--HHHHHHHHh--hcCCCcEEEEeccCCCCccch------------------------hhHHHHHh----
Q 005979 285 ----GLTAAD--EEIADWLRK--NYMDKFIILAVNKCESPRKGI------------------------MQVSEFWS---- 328 (666)
Q Consensus 285 ----~~~~~d--~~i~~~l~~--~~~~~p~ilv~NK~D~~~~~~------------------------~~~~~~~~---- 328 (666)
.....+ ..+++.+.. ...+.|+++|+||+|+..+.. .....+..
T Consensus 224 ~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~ 303 (354)
T 2xtz_A 224 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFE 303 (354)
T ss_dssp SSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHH
Confidence 111111 122222322 135789999999999743211 11112211
Q ss_pred -------------cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 329 -------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 329 -------------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
..+.++.+||++|.|+.++++.+.+.+.
T Consensus 304 ~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 304 ELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1123579999999999999999887664
No 446
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.76 E-value=3.9e-05 Score=83.14 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHh-------cCCcccccCCCCccc--------------ceeE---------------EEE
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV-------GGNRAIVVDEPGVTR--------------DRMY---------------GRS 206 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~-------~~~~~~~~~~~~~t~--------------~~~~---------------~~~ 206 (666)
...|+++|.+|+||||+...|. |.+...+...+.... +... ...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999987 555433332221110 0000 000
Q ss_pred eecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCC
Q 005979 207 FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL 286 (666)
Q Consensus 207 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~ 286 (666)
...+..+.||||||.... ...++.++ .....+..++.+++|+|+..+.
T Consensus 180 ~~~~~D~VIIDTpG~l~~---~~~l~~~L-----------------------------~~~~~~~~p~~vllVvda~~g~ 227 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHV---DEAMMDEI-----------------------------KQVHASINPVETLFVVDAMTGQ 227 (433)
T ss_dssp HHTTCSEEEEECCCCCTT---CHHHHHHH-----------------------------HHHHHHSCCSEEEEEEETTBCT
T ss_pred HhCCCCEEEEECCCcccc---cHHHHHHH-----------------------------HHHHHhhcCcceeEEeecchhH
Confidence 124568999999997541 11121111 0112344689999999998663
Q ss_pred CHHHHHHHHHHHhhcCCCc-EEEEeccCCCCcc
Q 005979 287 TAADEEIADWLRKNYMDKF-IILAVNKCESPRK 318 (666)
Q Consensus 287 ~~~d~~i~~~l~~~~~~~p-~ilv~NK~D~~~~ 318 (666)
.. ...++.+.. ..+ .-+|+||+|....
T Consensus 228 ~~--~~~~~~f~~---~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 228 DA--ANTAKAFNE---ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TH--HHHHHHHHH---HSCCCCEEEECTTSSSC
T ss_pred HH--HHHHHHHhc---cCCCeEEEEecCCCCcc
Confidence 32 233333333 233 3478999997644
No 447
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.76 E-value=0.00012 Score=76.46 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=79.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceee--------------------eEeEEEe--------------c
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRD--------------------AIDTEFT--------------G 416 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d--------------------~~~~~~~--------------~ 416 (666)
...++++|.+|+||||+++.|.+..........-...| .+..... .
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 45799999999999999999985321100000000000 0000000 0
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecc
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKW 496 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~ 496 (666)
..+..+.++||+|...... ....... ...+. -.+|-.++|+|+..+ .+-...++.+.+.-...++++||+
T Consensus 209 ~~~~d~vliDtaG~~~~~~-----~l~~eL~--~i~ra-l~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETNR-----NLMDEMK--KIARV-TKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHTCSEEEEEECCSCCTTT-----CHHHHHH--HHHHH-HCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred hccchhhHHhhccchhHHH-----HHHHHHH--HHHHH-hcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1234678899999754211 1112211 11122 348999999998776 334445555554333446788999
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHH
Q 005979 497 DTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 497 Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L 540 (666)
|.... .... . .+.. ..+.|+.+++ +|+++++|
T Consensus 279 D~~a~-~G~~----l-~~~~----~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADAR-GGAA----L-SISY----VIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSC-CHHH----H-HHHH----HHTCCEEEEE--CSSSTTCE
T ss_pred CCccc-hhHH----H-HHHH----HHCCCEEEEe--CCCCcccc
Confidence 97432 1111 1 1111 1258999998 88887653
No 448
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=0.0001 Score=79.78 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=56.8
Q ss_pred ceEEEecCCCCChhHHHHHHhcc---------------CcccccCCCcceeeeEeEEEec--------CCC--ceEEEEE
Q 005979 372 PAIAIVGRPNVGKSSILNALVGE---------------DRTIVSPISGTTRDAIDTEFTG--------PEG--QKFRLID 426 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~---------------~~~~~~~~~gtT~d~~~~~~~~--------~~~--~~~~liD 426 (666)
--|+|+|.+++|||||+|+|+|. .....+.. ++|+....+.+.. .+| ..+.++|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 46899999999999999999975 11122222 2333333333321 122 4699999
Q ss_pred cCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH
Q 005979 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (666)
Q Consensus 427 TpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~ 484 (666)
|||+.+... ..+.....-++ ++--++++|+ .+...+...++..+..+.+
T Consensus 147 TeG~~~~~~------~~~~d~~ifal-~~lLSs~~Iy--N~~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 147 TQGTFDSQS------TLRDSATVFAL-STMISSIQVY--NLSQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EECCCSSHH------HHHHHHHHHHH-HHHHCSEEEE--EESSSCCHHHHHHHHHHHH
T ss_pred CCccccccc------chhhhHHHHHH-HHHHhhHHHH--hhcccccHHHHHHHHHHHH
Confidence 999865321 01111111111 2223565444 5555677777776655443
No 449
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.69 E-value=5e-05 Score=73.10 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhccEEEEEecCCCCCC-HHHHHH---HHHHHhh--cCCCcEEEEeccC-CCCcc-chhhHHHHHh---
Q 005979 260 SMIERQATAAIEESCVIIFLVDGQAGLT-AADEEI---ADWLRKN--YMDKFIILAVNKC-ESPRK-GIMQVSEFWS--- 328 (666)
Q Consensus 260 ~~i~~~~~~~i~~ad~il~VvD~~~~~~-~~d~~i---~~~l~~~--~~~~p~ilv~NK~-D~~~~-~~~~~~~~~~--- 328 (666)
..++..+..++.++|.+|||||+.+.-. ....++ ...|... ..+.|++|.+||. |+... ...+..+...
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 3455667788999999999999976421 222333 3333332 2578999999995 66532 1112222221
Q ss_pred --cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 329 --LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 329 --~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..+.+.++||.+|.|+.+-++||.+.+..
T Consensus 193 l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 23468999999999999999999877653
No 450
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.68 E-value=4.4e-05 Score=77.07 Aligned_cols=92 Identities=12% Similarity=-0.020 Sum_probs=59.4
Q ss_pred HHHHhhCCeEEEEeeccccCC---HHHHH-HHHHHHH----hCCcEEEEEec-ccCCCCcchhhHHHHHHHHHH-HHhcC
Q 005979 452 FRAIRRSDVVALVIEAMACIT---EQDCR-IAERIEQ----EGKGCLIVVNK-WDTIPNKNQQTATYYEQDVRE-KLRAL 521 (666)
Q Consensus 452 ~~~i~~advvllViDa~~~~t---~~d~~-i~~~i~~----~~~pvIlv~NK-~Dl~~~~~~~~~~~~~~~l~~-~l~~~ 521 (666)
..|+.++|++|||||+++... .+++. +...+.+ .+.|++|.+|| -|+...-. ..++.+.+.- .+ .
T Consensus 205 r~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~e~L~L~~l-~- 279 (312)
T 3l2o_B 205 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLAHELHLNLL-N- 279 (312)
T ss_dssp HHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHHHHTTGGGG-C-
T ss_pred HHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHHHHcCCccC-C-
Confidence 468899999999999987532 22221 2222311 48899999997 58854322 1222222211 11 1
Q ss_pred CCCCEEEEeCccCCCHHHHHHHHHHHH
Q 005979 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (666)
Q Consensus 522 ~~~~ii~vSAk~g~gv~~L~~~i~~~~ 548 (666)
....|..|||++|.|+.+-++++.+..
T Consensus 280 r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 280 HPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 345699999999999999999998654
No 451
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.65 E-value=5e-05 Score=79.25 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=42.3
Q ss_pred hccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHH
Q 005979 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (666)
Q Consensus 272 ~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eL 347 (666)
..|-.++++|+..+. .-...++.+.+. -...++++||.|.....-....-....+.++..++ +|+++++|
T Consensus 241 ~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 241 KPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 478999999987652 223344444431 23357889999975433222223345677777777 77777554
No 452
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.64 E-value=3e-05 Score=81.00 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=77.2
Q ss_pred ccceeEEEEeecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEE
Q 005979 198 TRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (666)
Q Consensus 198 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il 277 (666)
|.......+.+++..+.+|||+|.... +..+..+++.++++|
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~--------------------------------------R~~w~~yy~~a~~iI 189 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSE--------------------------------------RKXWVSFFSDVDCAI 189 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHH--------------------------------------HHHHHTTSCSCSEEE
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccc--------------------------------------cccHHHHhccCCEEE
Confidence 444555566778899999999998641 244556678899999
Q ss_pred EEecCCC---------CCCHHH--HHHHHHHHh--hcCCCcEEEEeccCCCCccch------------------hhHH--
Q 005979 278 FLVDGQA---------GLTAAD--EEIADWLRK--NYMDKFIILAVNKCESPRKGI------------------MQVS-- 324 (666)
Q Consensus 278 ~VvD~~~---------~~~~~d--~~i~~~l~~--~~~~~p~ilv~NK~D~~~~~~------------------~~~~-- 324 (666)
||+|.+. ...... ..+++.+.. ...+.|+++++||+|+..+.. ....
T Consensus 190 fV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~ 269 (340)
T 4fid_A 190 FVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQY 269 (340)
T ss_dssp EEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHH
T ss_pred EEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHH
Confidence 9999862 111111 122222222 235789999999999754211 1111
Q ss_pred ---HH------Hh-----------------cCCCCeeecccCCCChHHHHHHHHHHhh
Q 005979 325 ---EF------WS-----------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (666)
Q Consensus 325 ---~~------~~-----------------~~~~~i~iSa~~g~Gi~eLl~~I~~~l~ 356 (666)
.| .. ..+.++.+||+.+.++..++..+.+.+-
T Consensus 270 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 270 IQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp HHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence 12 00 1245678999999999999988776554
No 453
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.57 E-value=0.00031 Score=76.13 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=65.7
Q ss_pred CCceEEEecCCCCChhHHHHHHh-------ccCcccccCCC---cc-----------eeeeEeE------------EEe-
Q 005979 370 RIPAIAIVGRPNVGKSSILNALV-------GEDRTIVSPIS---GT-----------TRDAIDT------------EFT- 415 (666)
Q Consensus 370 ~~~kI~vvG~~nvGKSSLin~ll-------~~~~~~~~~~~---gt-----------T~d~~~~------------~~~- 415 (666)
....|+++|.+|+||||+...|. |.....+..-+ +. ..+.+.. .+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999987 33322211111 00 0010000 000
Q ss_pred c-CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCc-EEEEE
Q 005979 416 G-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVV 493 (666)
Q Consensus 416 ~-~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~p-vIlv~ 493 (666)
. ..+..++|+||||...... ...........+..+|.+++|+|+..+.. ....++.+.. ..+ .-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~--------~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~-~l~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDE--------AMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNE-ALPLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCH--------HHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHH-HSCCCCEEE
T ss_pred HHhCCCCEEEEECCCcccccH--------HHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhc-cCCCeEEEE
Confidence 0 1456899999999643210 11111122234557899999999987632 2333333332 344 34689
Q ss_pred ecccCCC
Q 005979 494 NKWDTIP 500 (666)
Q Consensus 494 NK~Dl~~ 500 (666)
||+|...
T Consensus 248 nK~D~~~ 254 (433)
T 2xxa_A 248 TKVDGDA 254 (433)
T ss_dssp ECTTSSS
T ss_pred ecCCCCc
Confidence 9999743
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.57 E-value=0.00019 Score=78.26 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=38.5
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHH
Q 005979 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (666)
Q Consensus 273 ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eL 347 (666)
.+-++||+|+..+. .....++.+.+. .+. ..+|+||+|.....-....-...++.++..+ -+|.++++|
T Consensus 412 P~evLLvLDattGq--~al~~ak~f~~~-~~i-tgvIlTKLD~takgG~~lsi~~~~~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 412 PHEVMLTIDASTGQ--NAVSQAKLFHEA-VGL-TGITLTKLDGTAKGGVIFSVADQFGIPIRYI--GVGERIEDL 480 (503)
T ss_dssp SSEEEEEEEGGGTH--HHHHHHHHHHHH-TCC-SEEEEECGGGCSCCTHHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred CCeeEEEecCcccH--HHHHHHHHHHhh-cCC-CEEEEEcCCCcccccHHHHHHHHHCCCEEEE--ecCCChhhc
Confidence 56789999988652 223344444432 222 4578999997543322222234456666553 356666654
No 455
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=6.1e-05 Score=77.68 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHhhCCeEEEEeeccccCCHHHHHHHHHH---HHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEe
Q 005979 454 AIRRSDVVALVIEAMACITEQDCRIAERI---EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (666)
Q Consensus 454 ~i~~advvllViDa~~~~t~~d~~i~~~i---~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vS 530 (666)
.+.++|++++|+|+..+....+ .+-+.+ ...++|.+||+||+||.+.... ....+.+.+.+... +.+++++|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~---~~~~~~~~~~y~~~-g~~v~~~s 157 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDT---EDTIQAYAEDYRNI-GYDVYLTS 157 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHH---HHHHHHHHHHHHHH-TCCEEECC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhh---HHHHHHHHHHHHhC-CCeEEEEe
Confidence 5789999999999987655544 333443 3468999999999999864220 00112223333333 35899999
Q ss_pred CccCCCHHHHHHHH
Q 005979 531 AIAGQSVDKIIVAA 544 (666)
Q Consensus 531 Ak~g~gv~~L~~~i 544 (666)
|++|.|+++|+...
T Consensus 158 a~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 158 SKDQDSLADIIPHF 171 (307)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred cCCCCCHHHHHhhc
Confidence 99999998877644
No 456
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=0.00066 Score=70.51 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
..|+++|.+|+||||++..|.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.37 E-value=0.00028 Score=72.85 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchhHHHHHHhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
..|+++|.+|+||||++..|.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3799999999999999999864
No 458
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.34 E-value=0.0004 Score=71.41 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchhHHHHHHhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
...|+++|.+|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999853
No 459
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.33 E-value=0.0002 Score=73.90 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchhHHHHHHhc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
.-.|+++|.+|+|||||++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34899999999999999999974
No 460
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.00058 Score=71.81 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=53.4
Q ss_pred HhhCCeEEEEeeccccCCHHHH--HHHHHHHHhCCcEEEEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCc
Q 005979 455 IRRSDVVALVIEAMACITEQDC--RIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (666)
Q Consensus 455 i~~advvllViDa~~~~t~~d~--~i~~~i~~~~~pvIlv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk 532 (666)
+.++|.+++| |+..+...... +++......++|.|||+||+||.+.... ...+.+...+... +.+++++||+
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~----~~~~~~~~~y~~~-G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM----DFVNEQMDIYRNI-GYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH----HHHHHHHHHHHTT-TCCEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH----HHHHHHHHHHHhC-CCcEEEEecC
Confidence 5789999977 55454332221 1233334579999999999999764211 1112222333333 4689999999
Q ss_pred cCCCHHHHHHHH
Q 005979 533 AGQSVDKIIVAA 544 (666)
Q Consensus 533 ~g~gv~~L~~~i 544 (666)
+|.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999887654
No 461
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.22 E-value=0.0016 Score=70.91 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=76.9
Q ss_pred CceEEEecCCCCChhHHHHHHhccC------cccc-cCCCcc-------e---eeeEeEEEec-----------------
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGED------RTIV-SPISGT-------T---RDAIDTEFTG----------------- 416 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~------~~~~-~~~~gt-------T---~d~~~~~~~~----------------- 416 (666)
.-.++++|.+|+|||||++.|.+.. .... .+.... . +..+......
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 3478999999999999999987532 1111 111000 0 0000000000
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHh-----hCCeEEEEeeccccCCHHHHHHHHHHHHh-CCcEE
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIR-----RSDVVALVIEAMACITEQDCRIAERIEQE-GKGCL 490 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~-----~advvllViDa~~~~t~~d~~i~~~i~~~-~~pvI 490 (666)
..+..+.|+||+|...... ..... +.+..+.++ ..+-++||+|++.+ ......++.+.+. ++. .
T Consensus 373 ~~~~DvVLIDTaGrl~~~~-----~lm~E--L~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~it-g 442 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKS-----HLMEE--LKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLT-G 442 (503)
T ss_dssp HTTCSEEEECCCCSCCCHH-----HHHHH--HHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCS-E
T ss_pred hcCCCEEEEeCCCccchhh-----hHHHH--HHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCC-E
Confidence 1345789999999753211 01111 112222233 25678999999876 3344455555543 444 4
Q ss_pred EEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHH
Q 005979 491 IVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 491 lv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L 540 (666)
+|+||.|-... . .... .+... .+.|+.++. +|+++++|
T Consensus 443 vIlTKLD~tak-g-G~~l----si~~~----~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 443 ITLTKLDGTAK-G-GVIF----SVADQ----FGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp EEEECGGGCSC-C-THHH----HHHHH----HCCCEEEEE--CSSSGGGE
T ss_pred EEEEcCCCccc-c-cHHH----HHHHH----HCCCEEEEe--cCCChhhc
Confidence 67899996432 1 1111 11111 147888854 56777553
No 462
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.21 E-value=0.00052 Score=73.91 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchhHHHHHHhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
..|+++|.+|+||||++..|.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 463
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00062 Score=68.74 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccEEEEEecCCCC--CCHHHHH---HHHHHHhh--cCCCcEEEEecc-CCCCccc-hhhHHHHHh----
Q 005979 262 IERQATAAIEESCVIIFLVDGQAG--LTAADEE---IADWLRKN--YMDKFIILAVNK-CESPRKG-IMQVSEFWS---- 328 (666)
Q Consensus 262 i~~~~~~~i~~ad~il~VvD~~~~--~~~~d~~---i~~~l~~~--~~~~p~ilv~NK-~D~~~~~-~~~~~~~~~---- 328 (666)
++..+..+++++|++|||||+.+. +. ...+ +...+... ..+.|++|.+|| .|+...- ..+..+...
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC
Confidence 446677889999999999999764 33 2222 22444332 258899999997 5775421 112222221
Q ss_pred -cCCCCeeecccCCCChHHHHHHHHHHhhh
Q 005979 329 -LGFSPLPISAISGTGTGELLDLVCSELKK 357 (666)
Q Consensus 329 -~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~ 357 (666)
..+.+.++||.+|+|+.+-+++|.+.+..
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 23358999999999999999999987753
No 464
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.12 E-value=0.00097 Score=68.75 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHh-----hCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEE
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIR-----RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~-----~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~ 493 (666)
+..+.|+||||..... ..+-. ......+.+. .+|.+++|+|++.+ ......++.+.+.-...-+|+
T Consensus 186 ~~dvvIiDtpg~~~~~------~~l~~-eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK------KNLME-ELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSCH------HHHHH-HHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhhH------HHHHH-HHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEE
Confidence 4579999999952210 00000 1122222332 37889999999744 333344444443322344678
Q ss_pred ecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHH
Q 005979 494 NKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~ 539 (666)
||.|...... . .. .+... .+.|+.+++. |+++++
T Consensus 257 Tk~D~~~~gG-~-~l----~~~~~----~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 257 TKLDGTAKGG-I-TL----AIARE----LGIPIKFIGV--GEKAED 290 (306)
T ss_dssp ECGGGCSCTT-H-HH----HHHHH----HCCCEEEEEC--SSSGGG
T ss_pred eCCCCccchH-H-HH----HHHHH----HCCCEEEEeC--CCChhh
Confidence 9999753221 1 11 11111 2578888864 555554
No 465
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.11 E-value=0.002 Score=61.66 Aligned_cols=50 Identities=10% Similarity=-0.110 Sum_probs=35.6
Q ss_pred HHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhh---cCCCcEEEEeccCCCCc
Q 005979 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKCESPR 317 (666)
Q Consensus 267 ~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~---~~~~p~ilv~NK~D~~~ 317 (666)
...+..+|.+++++.....- ..-..+.+.++.. ..+.++.+|+|++|...
T Consensus 92 ~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp HHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred HHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 45677899999999987655 5555667777652 12457799999998643
No 466
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.04 E-value=0.0025 Score=66.06 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.7
Q ss_pred CceEEEecCCCCChhHHHHHHhc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG 393 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~ 393 (666)
...|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 467
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.02 E-value=0.0013 Score=67.80 Aligned_cols=147 Identities=20% Similarity=0.235 Sum_probs=76.2
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcc------ccc-CC--Cc-----------ceeeeEeEEE------------e--c
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRT------IVS-PI--SG-----------TTRDAIDTEF------------T--G 416 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~------~~~-~~--~g-----------tT~d~~~~~~------------~--~ 416 (666)
.-.|+++|.+|+|||||++.|.+.... ... +. ++ .....+.... . .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999853210 000 00 00 0000010000 0 0
Q ss_pred CCCceEEEEEcCCCccccccccCCchhhHHHHHHHHHH-----HhhCCeEEEEeeccccCCHHHHHHHHHHHHh-CCcEE
Q 005979 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA-----IRRSDVVALVIEAMACITEQDCRIAERIEQE-GKGCL 490 (666)
Q Consensus 417 ~~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~-----i~~advvllViDa~~~~t~~d~~i~~~i~~~-~~pvI 490 (666)
..+..+.++||+|...... ......+ +...+ ...++.+++++|++.+. +....+..+.+. +. .+
T Consensus 182 ~~~~d~~llDt~G~~~~~~-----~~~~eLs--~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~ 251 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKH-----NLMEELK--KVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TG 251 (304)
T ss_dssp HHTCSEEEECCCCCCTTCH-----HHHHHHH--HHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SE
T ss_pred hCCCCEEEecCCCCCCchH-----HHHHHHH--HHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cE
Confidence 1234578999999754211 0111111 11112 23578899999988762 334445544443 55 45
Q ss_pred EEEecccCCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHH
Q 005979 491 IVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 491 lv~NK~Dl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~ 539 (666)
+++||.|.... .... - .+... .+.|+.+++ +|+++++
T Consensus 252 iivTh~d~~a~-gg~~-l----~i~~~----~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 252 VIVTKLDGTAK-GGVL-I----PIVRT----LKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp EEEECTTSSCC-CTTH-H----HHHHH----HCCCEEEEE--CSSSTTC
T ss_pred EEEECCccccc-ccHH-H----HHHHH----HCCCeEEEe--CCCChhh
Confidence 67899997532 2111 1 11121 257888886 5666654
No 468
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.78 E-value=0.0023 Score=68.92 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEeccc
Q 005979 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWD 497 (666)
Q Consensus 418 ~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~D 497 (666)
.+..+.|+||||...... ....+ .......-.+|.+++|+|+..+ ......++...+.-...-+|+||+|
T Consensus 179 ~~~DvVIIDTaG~l~~d~-----~l~~e---l~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDE-----PLMGE---LARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCH-----HHHHH---HHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccH-----HHHHH---HHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCceEEEEeCcC
Confidence 456799999999643200 00010 1112223368999999999765 2233334433332223556889999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHHH
Q 005979 498 TIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKI 540 (666)
Q Consensus 498 l~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~L 540 (666)
.... .. ... .+.. ..+.|+.++. .|+.+++|
T Consensus 249 ~~~~-~g-~al----si~~----~~g~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 249 GDAR-GG-AAL----SARH----VTGKPIYFAG--VSEKPEGL 279 (425)
T ss_dssp GCSS-CH-HHH----HHHH----HHCCCEEEEE--CSSSGGGE
T ss_pred Cccc-HH-HHH----HHHH----HHCCCEEEEe--CCCChhhc
Confidence 7432 11 111 1111 1257888876 45555543
No 469
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.72 E-value=0.0011 Score=68.12 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.2
Q ss_pred CceEEEecCCCCChhHHHHHHhc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG 393 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~ 393 (666)
...|+++|.+|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 470
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.71 E-value=0.006 Score=64.16 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHhcC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
.|+++|.+|+|||||++.|.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 8999999999999999999763
No 471
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.67 E-value=0.0025 Score=65.32 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchhHHHHHHhc
Q 005979 164 PRVAIVGRPNVGKSALFNRLVG 185 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~ 185 (666)
..|+++|.+|+||||++..|.+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 472
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.58 E-value=0.00049 Score=66.16 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHhcCCc-ccccCCCCcccceeEEEEeecCeeEEEEecCCccc
Q 005979 163 LPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 223 (666)
...|+|+|.+|+|||||+++|++... ......+.+|+....+. .+|..+.++|+..+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTR 78 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhh
Confidence 34789999999999999999997643 24455566777766543 5677777888777643
No 473
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.53 E-value=0.021 Score=54.42 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-----CCcEEEEE
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-----GKGCLIVV 493 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-----~~pvIlv~ 493 (666)
...+.|+|||+... ..+...+..+|.+++++.....- ..-..+++.+.+. +.++.+|+
T Consensus 75 ~yD~viiD~~~~~~----------------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS----------------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp TSSEEEEECCSSSS----------------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCCEEEEECCCCCC----------------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46899999998632 12344677899999999987654 5555566766654 35778999
Q ss_pred ecccCC
Q 005979 494 NKWDTI 499 (666)
Q Consensus 494 NK~Dl~ 499 (666)
|++|..
T Consensus 138 N~~~~~ 143 (206)
T 4dzz_A 138 TRKIEM 143 (206)
T ss_dssp CSBCTT
T ss_pred eccCCC
Confidence 999953
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0095 Score=62.64 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.5
Q ss_pred CceEEEecCCCCChhHHHHHHhc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG 393 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~ 393 (666)
.-.++++|.+|+|||||++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999985
No 475
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.36 E-value=0.0005 Score=66.08 Aligned_cols=57 Identities=30% Similarity=0.571 Sum_probs=42.6
Q ss_pred ceEEEecCCCCChhHHHHHHhccCc-ccccCCCcceeeeEeEEEecCCCceEEEEEcCCCc
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR 431 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~~liDTpG~~ 431 (666)
.-|+++|++|+|||||++.|++... ......+.|||.+.... .+|..+.++|++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE---~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE---EDGKEYHFISTEEMT 77 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC---CTTSSCEECCHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe---eccccceeccHHHhh
Confidence 4689999999999999999997643 34566778888876533 256777777776653
No 476
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.29 E-value=0.0051 Score=59.51 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=32.1
Q ss_pred HHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCCCCc
Q 005979 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (666)
Q Consensus 268 ~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D~~~ 317 (666)
..+..+|.+++++.....--.....+.+.++.. .+.++.+|+|+++...
T Consensus 86 ~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 86 ALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred HHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 566789999999987532111223445556552 2567889999998764
No 477
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.23 E-value=0.01 Score=60.87 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.5
Q ss_pred CceEEEecCCCCChhHHHHHHhc
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG 393 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~ 393 (666)
.-.++++|.+|+||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999985
No 478
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.13 E-value=0.0099 Score=61.06 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchhHHHHHHhcC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
-.|+++|.+|+|||||++.|.|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999999999764
No 479
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.11 E-value=0.0089 Score=61.18 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHhCCcEEEEEecccC
Q 005979 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDT 498 (666)
Q Consensus 419 ~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~~~pvIlv~NK~Dl 498 (666)
+..+.|+||||..... ........... ..-.+|.+++|+|+..+ .+....++.+...-...-+|+||+|.
T Consensus 180 ~~D~viiDtpp~~~~d-------~~~~~~l~~~~-~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-------EPLMGELARLK-EVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp TCCEEEEECCCCSSCC-------HHHHHHHHHHH-HHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCCEEEEeCCCCcccc-------HHHHHHHHHHh-hhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 5679999999863210 00000111112 22258899999998753 33333344333322234478999997
Q ss_pred CCCcchhhHHHHHHHHHHHHhcCCCCCEEEEeCccCCCHHH
Q 005979 499 IPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (666)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~vSAk~g~gv~~ 539 (666)
... .. .. . .+.. ..+.|+.+++ +|+++++
T Consensus 250 ~~~-~g-~~---~-~~~~----~~~~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 250 DAR-GG-AA---L-SARH----VTGKPIYFAG--VSEKPEG 278 (295)
T ss_dssp CSS-CH-HH---H-HHHH----HHCCCEEEEC--------C
T ss_pred Ccc-HH-HH---H-HHHH----HHCcCEEEEe--CCCCccc
Confidence 532 11 11 1 1111 1257888876 4555543
No 480
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.02 E-value=0.04 Score=59.28 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHh
Q 005979 163 LPRVAIVGRPNVGKSALFNRLV 184 (666)
Q Consensus 163 ~~~V~ivG~~n~GKSsL~n~l~ 184 (666)
...|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4579999999999999999765
No 481
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.90 E-value=0.033 Score=60.01 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=54.4
Q ss_pred CceEEEecCCCCChhHHHHHHhc-----------------cCcccccCCC-cceeeeEeE-----EEecCCC--ceEEEE
Q 005979 371 IPAIAIVGRPNVGKSSILNALVG-----------------EDRTIVSPIS-GTTRDAIDT-----EFTGPEG--QKFRLI 425 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~-----------------~~~~~~~~~~-gtT~d~~~~-----~~~~~~~--~~~~li 425 (666)
..-|+|+|..++|||+|+|.|++ ...+.+++.. .+|.- +.. .+...+| ..+.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkG-IWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTG-IQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCS-EEEESSCEEEECTTSCEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCce-EEEecCcccccCCCCCeeEEEEE
Confidence 34688999999999999997652 1233333221 12221 111 1112234 369999
Q ss_pred EcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH
Q 005979 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ 484 (666)
Q Consensus 426 DTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~ 484 (666)
||.|+.+... ..+.....-++ ++--++++| |.....+..+++..+..+-+
T Consensus 146 DTEG~~d~~~------~~~~d~~ifaL-a~LLSS~~I--yN~~~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQS------TLRDSATVFAL-STMISSIQV--YNLSQNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTC------CHHHHHHHHHH-HHHHCSEEE--EEEESSCCHHHHHHHHHHHH
T ss_pred eccCCCCccc------CccccHHHHHH-HHHHhhhee--ecccccCCHHHHHHHHHHHH
Confidence 9999876422 11111111111 222355554 45555677777775554443
No 482
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.84 E-value=0.012 Score=56.97 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=45.2
Q ss_pred CCceEEEEEcCCC-ccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHHh-CCcEEEEEec
Q 005979 418 EGQKFRLIDTAGI-RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-GKGCLIVVNK 495 (666)
Q Consensus 418 ~~~~~~liDTpG~-~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~~-~~pvIlv~NK 495 (666)
+...+.|+|||+. ... .+...+..+|.+|+++.....--..-..+++.+.+. +.++.+|+|+
T Consensus 66 ~~yD~viiD~p~~~~~~----------------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~ 129 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE----------------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTI 129 (209)
T ss_dssp GGCSEEEEEEECCCSSS----------------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECS
T ss_pred hcCCEEEEeCCCCcCcH----------------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEe
Confidence 3457999999985 321 123467889999999987643222333456666663 6788899999
Q ss_pred ccCC
Q 005979 496 WDTI 499 (666)
Q Consensus 496 ~Dl~ 499 (666)
+|..
T Consensus 130 ~~~~ 133 (209)
T 3cwq_A 130 IPPY 133 (209)
T ss_dssp BCCT
T ss_pred cCCc
Confidence 9864
No 483
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.83 E-value=0.0021 Score=70.52 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=60.4
Q ss_pred CceEEEecCCCCChhHHHHHHhccCcccccCCCcceeeeEe---EEEecCCC-ceEEEEEcCCCccccccccCCchhhHH
Q 005979 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID---TEFTGPEG-QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (666)
Q Consensus 371 ~~kI~vvG~~nvGKSSLin~ll~~~~~~~~~~~gtT~d~~~---~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~e~~ 446 (666)
...|+++|.||+||||+.++|...... .+...+.+. ......++ ....+||+.|...+.... ..-..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-----~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re----~~~~~ 109 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-----IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRK----QCALA 109 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHH----HHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-----cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHH----HHHHH
Confidence 468999999999999999999743211 111111110 00000011 233567777752110000 00001
Q ss_pred HHHHHHHHHhhCCeEEEEeeccccCCHHHHH-HHHHHHHhCCcEEEEE
Q 005979 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQEGKGCLIVV 493 (666)
Q Consensus 447 ~~~~~~~~i~~advvllViDa~~~~t~~d~~-i~~~i~~~~~pvIlv~ 493 (666)
.......++..+++.++|+|+++. +..... |...+.+.+.+++++-
T Consensus 110 ~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 110 ALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEE
Confidence 122335567778888999999976 444444 5566666676665544
No 484
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.57 E-value=0.022 Score=58.28 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=40.7
Q ss_pred CCceEEEEEcCCCccccccccCCchhhHHHHHHHHHHHhhCCeEEEEeeccccCCHHHHHHHHHHHH----hCCcEE-EE
Q 005979 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQ----EGKGCL-IV 492 (666)
Q Consensus 418 ~~~~~~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~advvllViDa~~~~t~~d~~i~~~i~~----~~~pvI-lv 492 (666)
+...++|+|||+...... +...+..||.+|+|+.....--..-..+++.+.+ .+.+++ +|
T Consensus 155 ~~yD~ViiD~p~~~~~~~---------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV 219 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGG---------------FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCV 219 (307)
T ss_dssp SSCSEEEEEECCSSCCGG---------------GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEE
T ss_pred ccCCEEEEeCCCccchHH---------------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEE
Confidence 346899999988543111 1124678999999998754211222334555554 245555 89
Q ss_pred EecccC
Q 005979 493 VNKWDT 498 (666)
Q Consensus 493 ~NK~Dl 498 (666)
+|+++-
T Consensus 220 ~N~~~~ 225 (307)
T 3end_A 220 ANRSRA 225 (307)
T ss_dssp EESCSC
T ss_pred EecCCc
Confidence 999983
No 485
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.48 E-value=0.16 Score=58.86 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceEEEecCCCCChhHHHHHHhccC
Q 005979 372 PAIAIVGRPNVGKSSILNALVGED 395 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~ 395 (666)
..|.+.|+||+|||.|..++.++.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 469999999999999999998653
No 486
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.35 E-value=0.03 Score=57.36 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHhccEEEEEecCCCCCCHHHHHHHHHHHhh--cCCCcEE-EEeccCCC
Q 005979 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFII-LAVNKCES 315 (666)
Q Consensus 269 ~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~--~~~~p~i-lv~NK~D~ 315 (666)
.+..+|.+|+|+.....-...-..+++.++.. ..+.+++ +|+|+++.
T Consensus 176 ~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 176 PLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35779999999986521111223345555542 1234444 89999985
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.09 E-value=0.015 Score=59.73 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=58.3
Q ss_pred CCcEEEEeccCCCCccchhhHHHHHhcCCCCeeecccCCCChHHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCC
Q 005979 303 DKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNV 382 (666)
Q Consensus 303 ~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~i~iSa~~g~Gi~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nv 382 (666)
..| .+|++|.|...+... ......+++++.++..+..++..|..+|...+......+..-. .-...-|+++|.+|+
T Consensus 80 ~~P-~IIltrg~~~peeli--e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v-~~~g~~vl~~G~sG~ 155 (314)
T 1ko7_A 80 ETP-AIIVTRDLEPPEELI--EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLV-DVYGVGVLITGDSGI 155 (314)
T ss_dssp TCC-CEEECTTCCCCHHHH--HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEE-EETTEEEEEEESTTS
T ss_pred CCC-EEEEeCCCCCCHHHH--HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEE-EECCEEEEEEeCCCC
Confidence 455 455688887754332 2234458889999998888888888887765543210000000 012346999999999
Q ss_pred ChhHHHHHHhccC
Q 005979 383 GKSSILNALVGED 395 (666)
Q Consensus 383 GKSSLin~ll~~~ 395 (666)
||||+.+.|+...
T Consensus 156 GKSt~a~~l~~~g 168 (314)
T 1ko7_A 156 GKSETALELIKRG 168 (314)
T ss_dssp SHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999653
No 488
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.94 E-value=0.012 Score=57.91 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred eEEEEcCCCCchhHHHHHH------hcCCcccccCCCCcccceeEEEEe-------------------------------
Q 005979 165 RVAIVGRPNVGKSALFNRL------VGGNRAIVVDEPGVTRDRMYGRSF------------------------------- 207 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l------~~~~~~~~~~~~~~t~~~~~~~~~------------------------------- 207 (666)
+|++.|..|+||||+.-.| .|.+...+.-.+.-......+.-.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Q ss_pred -----------------------------------------------ecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005979 208 -----------------------------------------------WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (666)
Q Consensus 208 -----------------------------------------------~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (666)
.....++|||||+...
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~----------------- 144 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIE----------------- 144 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCT-----------------
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCccc-----------------
Q ss_pred ccCCCCchhhHHHHHhccHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCCCcEEEEeccCC
Q 005979 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (666)
Q Consensus 241 ~~~~G~~~~~~~~~~~~~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~~p~ilv~NK~D 314 (666)
..+...+..+|.+++|+.....--..-..+.+++..... ..+.+|+||++
T Consensus 145 -----------------------~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~-~~~~~v~N~~~ 194 (254)
T 3kjh_A 145 -----------------------HLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI-KKVRYVINKVR 194 (254)
T ss_dssp -----------------------TCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC-SCEEEEEEEEC
T ss_pred -----------------------HHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC-ccEEEEEeCCC
No 489
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.85 E-value=0.012 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchhHHHHHHhcCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGN 187 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~ 187 (666)
+++|+|.+|+|||||++.|.|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998763
No 490
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.85 E-value=0.0066 Score=57.70 Aligned_cols=51 Identities=29% Similarity=0.459 Sum_probs=33.8
Q ss_pred eEEEecCCCCChhHHHHHHhccCc-ccccCCCcceeeeEeEEEecCCCceEEEEE
Q 005979 373 AIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLID 426 (666)
Q Consensus 373 kI~vvG~~nvGKSSLin~ll~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~~liD 426 (666)
-|+|+|++||||+||+++|+.... ...-..+.|||.+.... .+|..+.+++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE---~~G~dY~Fvs 54 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE---VNGKDYNFVS 54 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC---CBTTTBEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC---cCCceeEeec
Confidence 388999999999999999986532 23345667787654322 1344445543
No 491
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.69 E-value=0.011 Score=55.64 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=26.3
Q ss_pred ceEEEecCCCCChhHHHHHHhccCcc-cccCCCcceeee
Q 005979 372 PAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDA 409 (666)
Q Consensus 372 ~kI~vvG~~nvGKSSLin~ll~~~~~-~~~~~~gtT~d~ 409 (666)
..++++|.+|+|||||++.|++.... .......+|+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 36899999999999999999875321 223334455543
No 492
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.016 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCchhHHHHHHhcC
Q 005979 164 PRVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
..++|+|.+|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
No 493
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.55 E-value=0.015 Score=55.64 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHHhcC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
No 494
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.45 E-value=0.082 Score=52.26 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCeEEEEcC-CCCchhHHHHHH------hcCCcccccCCCC-------------------------------cccceeE
Q 005979 162 LLPRVAIVGR-PNVGKSALFNRL------VGGNRAIVVDEPG-------------------------------VTRDRMY 203 (666)
Q Consensus 162 ~~~~V~ivG~-~n~GKSsL~n~l------~~~~~~~~~~~~~-------------------------------~t~~~~~ 203 (666)
+...|+++|. .|+||||+.-.| .|.+...+.-.++ .......
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Q ss_pred EEEeec--------------------------CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhc
Q 005979 204 GRSFWG--------------------------EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVAR 257 (666)
Q Consensus 204 ~~~~~~--------------------------~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 257 (666)
..+.+- ...++|||||+...
T Consensus 81 ~~l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~---------------------------------- 126 (260)
T 3q9l_A 81 ENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIE---------------------------------- 126 (260)
T ss_dssp TTEEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSS----------------------------------
T ss_pred CCEEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCC----------------------------------
Q ss_pred cHHHHHHHHHHHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcCC---------CcEEEEeccCC
Q 005979 258 MPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD---------KFIILAVNKCE 314 (666)
Q Consensus 258 ~~~~i~~~~~~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~~---------~p~ilv~NK~D 314 (666)
..+...+..+|.+++|++....--..-..+.+.++. .+ ..+.+|+|+++
T Consensus 127 ------~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 127 ------TGALMALYFADEAIITTNPEVSSVRDSDRILGILAS--KSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp ------HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTT--SSHHHHTTCSCCEEEEEEEEEC
T ss_pred ------HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHH--hccccccccCCcceEEEEecCC
No 495
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.31 E-value=0.019 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhcCC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGGN 187 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~~ 187 (666)
.++|+|.+|+|||||++.|.|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 69999999999999999998853
No 496
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.13 E-value=0.12 Score=58.23 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCchhHHHHHH
Q 005979 164 PRVAIVGRPNVGKSALFNRL 183 (666)
Q Consensus 164 ~~V~ivG~~n~GKSsL~n~l 183 (666)
..+.+.|.+|+||||+--.|
T Consensus 9 ~i~~~sgkGGvGKTT~a~~l 28 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCAT 28 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHH
Confidence 35677899999999998876
No 497
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.12 E-value=0.047 Score=52.42 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhcCCceEEEecCCCCChhHHHHHHhcc
Q 005979 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE 394 (666)
Q Consensus 345 ~eLl~~I~~~l~~~~~~~~~~~~~~~~~kI~vvG~~nvGKSSLin~ll~~ 394 (666)
.++++.|.+.+... ......|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~~~~~~~~~~~---------~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 5 AALCQGVLERLDPR---------QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHHSCTT---------CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---------CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35666666655432 123458999999999999999999864
No 498
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.09 E-value=0.028 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCchhHHHHHHhcC
Q 005979 162 LLPRVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 162 ~~~~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
+.+.++++|.+|+|||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 499
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.99 E-value=0.064 Score=52.53 Aligned_cols=50 Identities=6% Similarity=-0.011 Sum_probs=29.9
Q ss_pred HHHHhccEEEEEecCCCCCCHHHHHHHHHHHhhcC-CCcEEEEeccCCCCc
Q 005979 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM-DKFIILAVNKCESPR 317 (666)
Q Consensus 268 ~~i~~ad~il~VvD~~~~~~~~d~~i~~~l~~~~~-~~p~ilv~NK~D~~~ 317 (666)
..+..+|.+++|+.....-...-..+.+.++.... ...+.+|+|+++...
T Consensus 136 ~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 136 WVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred HHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 45677899999888652111122344555554211 345789999998643
No 500
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.96 E-value=0.028 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHHhcC
Q 005979 165 RVAIVGRPNVGKSALFNRLVGG 186 (666)
Q Consensus 165 ~V~ivG~~n~GKSsL~n~l~~~ 186 (666)
.|+|+|.+|+|||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999885
Done!