Your job contains 1 sequence.
>005980
MEVDDEWEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK
GSLGDFSKEQVPKLSVKFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVP
FLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRD
GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLN
IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKI
VIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNV
HEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAE
KDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE
TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA
AVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD
DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK
LKYRKL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005980
(666 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007775 - symbol:CHR18 "chromatin remodeling f... 2442 1.2e-253 1
UNIPROTKB|E1BSZ4 - symbol:ZRANB3 "Uncharacterized protein... 913 1.4e-93 2
UNIPROTKB|E1BSZ6 - symbol:ZRANB3 "Uncharacterized protein... 913 1.4e-93 2
UNIPROTKB|E2RK04 - symbol:ZRANB3 "Uncharacterized protein... 927 4.3e-93 1
MGI|MGI:1918362 - symbol:Zranb3 "zinc finger, RAN-binding... 910 2.7e-91 1
UNIPROTKB|E1BB03 - symbol:ZRANB3 "DNA annealing helicase ... 908 4.5e-91 1
UNIPROTKB|Q5FWF4 - symbol:ZRANB3 "DNA annealing helicase ... 900 3.1e-90 1
UNIPROTKB|F5GYN7 - symbol:ZRANB3 "Endonuclease ZRANB3" sp... 880 4.1e-88 1
DICTYBASE|DDB_G0274965 - symbol:DDB_G0274965 "CHR group p... 866 1.8e-87 2
DICTYBASE|DDB_G0281559 - symbol:DDB_G0281559 "CHR group p... 867 9.9e-87 1
ZFIN|ZDB-GENE-060712-1 - symbol:zranb3 "zinc finger, RAN-... 861 4.3e-86 1
GENEDB_PFALCIPARUM|PF13_0308 - symbol:PF13_0308 "DNA heli... 857 1.1e-85 1
UNIPROTKB|Q8IDD0 - symbol:PF13_0308 "DNA helicase, putati... 857 1.1e-85 1
UNIPROTKB|H7BYI2 - symbol:SMARCAL1 "SWI/SNF-related matri... 581 1.0e-84 2
RGD|1564952 - symbol:Zranb3 "zinc finger, RAN-binding dom... 814 4.1e-81 1
UNIPROTKB|F1S0D5 - symbol:ZRANB3 "Uncharacterized protein... 790 1.4e-78 1
UNIPROTKB|F1P0X4 - symbol:SMARCAL1 "Uncharacterized prote... 733 6.6e-77 2
UNIPROTKB|Q498E7 - symbol:smarcal1 "SWI/SNF-related matri... 718 2.2e-76 2
RGD|1306134 - symbol:Smarcal1 "Swi/SNF related matrix ass... 710 2.3e-74 2
UNIPROTKB|Q0P4U8 - symbol:smarcal1 "SWI/SNF-related matri... 709 2.9e-74 2
UNIPROTKB|Q9NZC9 - symbol:SMARCAL1 "SWI/SNF-related matri... 707 7.6e-74 2
ZFIN|ZDB-GENE-041210-303 - symbol:smarcal1 "SWI/SNF relat... 707 1.6e-73 2
MGI|MGI:1859183 - symbol:Smarcal1 "SWI/SNF related matrix... 698 1.1e-72 2
UNIPROTKB|E2RGL2 - symbol:SMARCAL1 "Uncharacterized prote... 683 9.5e-71 2
UNIPROTKB|F1MDP3 - symbol:SMARCAL1 "SWI/SNF-related matri... 643 1.2e-70 3
UNIPROTKB|Q9TTA5 - symbol:SMARCAL1 "SWI/SNF-related matri... 635 1.3e-69 3
UNIPROTKB|F8WCT9 - symbol:ZRANB3 "Endonuclease ZRANB3" sp... 678 1.1e-66 1
TAIR|locus:2142753 - symbol:AT5G07810 species:3702 "Arabi... 419 3.0e-65 2
WB|WBGene00015806 - symbol:C16A3.1 species:6239 "Caenorha... 651 7.6e-64 1
UNIPROTKB|Q8MNV7 - symbol:C16A3.1 "Putative SMARCAL1-like... 651 7.6e-64 1
UNIPROTKB|K7DXW5 - symbol:Bt.28179 "Uncharacterized prote... 620 7.1e-60 1
FB|FBgn0031655 - symbol:Marcal1 "Marcal1" species:7227 "D... 607 3.5e-59 1
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 260 3.8e-36 2
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 419 6.8e-36 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 417 7.0e-36 1
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 417 7.0e-36 1
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 417 7.0e-36 1
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 416 9.1e-36 1
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 416 9.1e-36 1
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 416 9.1e-36 1
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 257 2.9e-35 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 412 3.0e-35 1
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 407 8.9e-35 1
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 413 1.7e-34 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 400 4.9e-34 1
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 397 1.2e-33 1
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 242 1.8e-33 2
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 394 2.8e-33 1
UNIPROTKB|Q86WJ1 - symbol:CHD1L "Chromodomain-helicase-DN... 392 3.1e-33 1
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 392 4.4e-33 1
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 394 6.6e-33 1
UNIPROTKB|F1N507 - symbol:Bt.112326 "Uncharacterized prot... 249 7.4e-33 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 387 7.7e-33 1
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 241 1.0e-32 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 388 1.2e-32 1
ZFIN|ZDB-GENE-040426-892 - symbol:chd1l "chromodomain hel... 387 1.5e-32 1
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 387 1.6e-32 1
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 252 2.6e-32 2
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 252 2.6e-32 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 252 2.6e-32 2
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 231 3.1e-32 2
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 231 3.1e-32 2
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 231 3.2e-32 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 251 3.3e-32 2
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 251 4.2e-32 2
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 225 4.3e-32 2
FB|FBgn0022787 - symbol:Hel89B "Helicase 89B" species:722... 249 4.8e-32 3
RGD|1564130 - symbol:Btaf1 "BTAF1 RNA polymerase II, B-TF... 242 5.5e-32 2
SGD|S000000017 - symbol:FUN30 "Snf2p family member with A... 237 5.5e-32 2
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 223 6.0e-32 2
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 253 6.7e-32 2
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 380 6.8e-32 1
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 383 1.0e-31 1
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 383 1.1e-31 1
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 251 1.1e-31 2
UNIPROTKB|Q3B7N1 - symbol:CHD1L "Chromodomain-helicase-DN... 378 1.1e-31 1
UNIPROTKB|F1Q2U2 - symbol:CHD1L "Uncharacterized protein"... 378 1.1e-31 1
UNIPROTKB|F1SDB8 - symbol:CHD1L "Uncharacterized protein"... 378 1.2e-31 1
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 236 1.3e-31 3
DICTYBASE|DDB_G0286219 - symbol:DDB_G0286219 "putative TB... 242 1.4e-31 2
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 383 1.4e-31 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 379 1.4e-31 1
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 230 1.5e-31 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 230 1.5e-31 2
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 381 1.7e-31 1
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 381 1.8e-31 1
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 228 1.8e-31 2
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 220 2.0e-31 2
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 380 2.1e-31 1
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 375 2.5e-31 1
UNIPROTKB|F1MFS2 - symbol:CHD1L "Chromodomain-helicase-DN... 374 3.2e-31 1
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 231 3.4e-31 3
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 241 4.0e-31 3
GENEDB_PFALCIPARUM|PF08_0048 - symbol:PF08_0048 "ATP-depe... 234 4.1e-31 3
UNIPROTKB|C0H4W3 - symbol:PF08_0048 "Probable ATP-depende... 234 4.1e-31 3
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 242 4.2e-31 3
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 242 5.0e-31 3
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 229 5.4e-31 2
UNIPROTKB|F1RN66 - symbol:CHD1 "Uncharacterized protein" ... 375 8.2e-31 1
UNIPROTKB|I3L6N4 - symbol:CHD1 "Uncharacterized protein" ... 375 8.2e-31 1
WARNING: Descriptions of 451 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2007775 [details] [associations]
symbol:CHR18 "chromatin remodeling factor18" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 PROSITE:PS51467
SMART:SM00490 EMBL:CP002684 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14440 OMA:IDGKTPS IPI:IPI00530561
RefSeq:NP_175265.3 UniGene:At.38447 UniGene:At.71075
ProteinModelPortal:F4HWU9 SMR:F4HWU9 PRIDE:F4HWU9
EnsemblPlants:AT1G48310.1 GeneID:841251 KEGG:ath:AT1G48310
Uniprot:F4HWU9
Length = 673
Score = 2442 (864.7 bits), Expect = 1.2e-253, P = 1.2e-253
Identities = 478/667 (71%), Positives = 555/667 (83%)
Query: 3 VDDEWEFSAEELDFLEREALQQI-AQRHSKPFSDSP-SYKVEALPQGSRTLPLSVAPAPK 60
+DD W+ + EE+D +E EALQ+I QR+S S P +V QG+R LP ++AP P
Sbjct: 1 MDDFWDLTVEEMDAIENEALQRINQQRNSSSSSSLPIPNEVHTSSQGARILPSTLAPKPN 60
Query: 61 GSLGDFSKEQVPKLSVKFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVP 120
G SK Q K+SVK LH+SG +AAKF Y+ V+V A RKIPKA WNAKERLWTFP
Sbjct: 61 TDAG--SKPQEQKVSVKILLHSSGVLAAKFPYNQVVVDAVRKIPKAIWNAKERLWTFPHS 118
Query: 121 FLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRD 180
LSSAE +L EIS VEIENL PLVQRAIASAS PDLR Y++IP+HIE KLLPFQR+
Sbjct: 119 SLSSAENILREISSVKVEIENLDPLVQRAIASASRVPDLRHLYEKIPSHIEPKLLPFQRE 178
Query: 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLN 240
G+ F LQHGGR+LLADEMGLGKT+QAIAV TC ++ WPVLI+ PSSLRLHWA MI QWL+
Sbjct: 179 GIEFILQHGGRVLLADEMGLGKTLQAIAVTTCVQESWPVLIIAPSSLRLHWATMIHQWLH 238
Query: 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKI 300
+PPS+IVVVL Q GGSN+ GFTIVSSNTK I LDG+FNI+SYDVV KL +LM+ +FK+
Sbjct: 239 VPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFNIVSYDVVTKLDKLLMALDFKV 298
Query: 301 VIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNV 360
VIADESHFLKN QAKRT+A LP+IKKAQYA+LLSGTPALSRPIELFKQLEALYPDVY+N+
Sbjct: 299 VIADESHFLKNGQAKRTSACLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNI 358
Query: 361 HEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAE 420
HEYG RYCKGG FG YQGASNH+ELHNLMKATVMIRRLKKDVL +LP KRRQQVFLD+A
Sbjct: 359 HEYGGRYCKGGFFGTYQGASNHDELHNLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAA 418
Query: 421 KDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
KDM+QI ALF EL+VVK KIK C SE++++SLKF EKNLINKIYTDSA AKIPAVLDYLE
Sbjct: 419 KDMKQINALFHELKVVKSKIKDCISEDDIKSLKFIEKNLINKIYTDSAVAKIPAVLDYLE 478
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
VIEAGCKFL+FAHHQ ML+ +HQ KKKV CIRIDG TP +SRQALV++FQ+KD++KA
Sbjct: 479 NVIEAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKA 538
Query: 541 AVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
AVLS++A GVG+TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN++YLLANDTVD
Sbjct: 539 AVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVD 598
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQI-------RSSPAKQKTLDSFLKRCNNVD 653
DI+WDVV+SKL+NLGQ+LDG EN+L+V+SS + R+SP KQ+TL+ FLKRC +D
Sbjct: 599 DIIWDVVQSKLDNLGQMLDGQENALDVASSHMMSSPTKPRNSPTKQQTLEPFLKRCKRLD 658
Query: 654 DS--EHQ 658
D EHQ
Sbjct: 659 DDTEEHQ 665
>UNIPROTKB|E1BSZ4 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194
SMART:SM00490 SMART:SM00547 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0005622 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 EMBL:AADN02016954
IPI:IPI00599003 Ensembl:ENSGALT00000019961 ArrayExpress:E1BSZ4
Uniprot:E1BSZ4
Length = 1078
Score = 913 (326.5 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 202/484 (41%), Positives = 299/484 (61%)
Query: 153 ASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC 212
AS + ++ + +P + KLLPFQ G+ FALQ GR ++ADEMGLGKTIQAIA++
Sbjct: 10 ASYSENVDAELSFLPERLRKKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYY 69
Query: 213 FRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271
+R WP+LI+ PSSLR W +++W+ + P +I+++ N++ +S T +
Sbjct: 70 YRREWPLLIVVPSSLRYPWVDELEKWIPELSPDDIIII------QNKTDTGRIS--TSKV 121
Query: 272 IPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331
I L + +++ D L + L NFK+V+ DESH++K+ A R+ LPI++KA A+
Sbjct: 122 IVLG--YGLLTSDAQT-LVDTLYRQNFKVVVIDESHYMKSRNAMRSNILLPIVQKATRAI 178
Query: 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIYQ-----GASNHEE 384
LL+GTPAL RP ELF Q+EAL+P + EY +YC + FG + GASN +E
Sbjct: 179 LLTGTPALGRPEELFMQIEALFPRRFGTWSEYAKKYCDARLRFFGKRKQWDCRGASNLKE 238
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACK 444
LH L++ +MIRRLK DVL QLP K RQ++ D+ + + + F E E + K+ +
Sbjct: 239 LHQLLRE-IMIRRLKNDVLTQLPPKVRQRIPFDLPQATAKNLSTTFAEWERLMRKLNS-- 295
Query: 445 SEEEVQSLKFTE-KNLINKIYTDSAEAKIPAVLDYLETVIEAG-CKFLIFAHHQPMLDAI 502
E S F E +LI ++Y ++A AK AV DY+ ++E KFL+FAHH ML A
Sbjct: 296 --EPTDS-HFVEIMSLITRMYKETAIAKAGAVKDYIRMMLENDKLKFLVFAHHISMLQAC 352
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562
+ ++ KV IRIDG P A R LV +FQ+ D + A+LS++A G GLT TAA+ ++F
Sbjct: 353 TEAVIENKVRYIRIDGSVPSAERIRLVNQFQKDPDTRVAILSIQAAGQGLTFTAATHIVF 412
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 622
AEL W PG + QAEDRAHRIGQ SSVN+++L+A T+D ++W ++ K + G L+G +
Sbjct: 413 AELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDPLMWAMLNRKAKVTGSTLNGKK 472
Query: 623 NSLE 626
++
Sbjct: 473 EKMQ 476
Score = 38 (18.4 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 624 SLEVSSSQIRSSPAKQKTLDSFLKRCNNV 652
S+ VSSS+ ++ K+ TL F ++ N V
Sbjct: 583 SIPVSSSKKKTLTGKKSTL--FTEKNNEV 609
>UNIPROTKB|E1BSZ6 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0036292 "DNA rewinding" evidence=IEA] [GO:0036310
"annealing helicase activity" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0048478 "replication fork
protection" evidence=IEA] [GO:0070530 "K63-linked polyubiquitin
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194
SMART:SM00490 SMART:SM00547 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0005622 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 OMA:ACTEAVI
EMBL:AADN02016954 IPI:IPI00573139 Ensembl:ENSGALT00000019959
ArrayExpress:E1BSZ6 Uniprot:E1BSZ6
Length = 1086
Score = 913 (326.5 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 202/484 (41%), Positives = 299/484 (61%)
Query: 153 ASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC 212
AS + ++ + +P + KLLPFQ G+ FALQ GR ++ADEMGLGKTIQAIA++
Sbjct: 10 ASYSENVDAELSFLPERLRKKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYY 69
Query: 213 FRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271
+R WP+LI+ PSSLR W +++W+ + P +I+++ N++ +S T +
Sbjct: 70 YRREWPLLIVVPSSLRYPWVDELEKWIPELSPDDIIII------QNKTDTGRIS--TSKV 121
Query: 272 IPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331
I L + +++ D L + L NFK+V+ DESH++K+ A R+ LPI++KA A+
Sbjct: 122 IVLG--YGLLTSDAQT-LVDTLYRQNFKVVVIDESHYMKSRNAMRSNILLPIVQKATRAI 178
Query: 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIYQ-----GASNHEE 384
LL+GTPAL RP ELF Q+EAL+P + EY +YC + FG + GASN +E
Sbjct: 179 LLTGTPALGRPEELFMQIEALFPRRFGTWSEYAKKYCDARLRFFGKRKQWDCRGASNLKE 238
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACK 444
LH L++ +MIRRLK DVL QLP K RQ++ D+ + + + F E E + K+ +
Sbjct: 239 LHQLLRE-IMIRRLKNDVLTQLPPKVRQRIPFDLPQATAKNLSTTFAEWERLMRKLNS-- 295
Query: 445 SEEEVQSLKFTE-KNLINKIYTDSAEAKIPAVLDYLETVIEAG-CKFLIFAHHQPMLDAI 502
E S F E +LI ++Y ++A AK AV DY+ ++E KFL+FAHH ML A
Sbjct: 296 --EPTDS-HFVEIMSLITRMYKETAIAKAGAVKDYIRMMLENDKLKFLVFAHHISMLQAC 352
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562
+ ++ KV IRIDG P A R LV +FQ+ D + A+LS++A G GLT TAA+ ++F
Sbjct: 353 TEAVIENKVRYIRIDGSVPSAERIRLVNQFQKDPDTRVAILSIQAAGQGLTFTAATHIVF 412
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 622
AEL W PG + QAEDRAHRIGQ SSVN+++L+A T+D ++W ++ K + G L+G +
Sbjct: 413 AELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDPLMWAMLNRKAKVTGSTLNGKK 472
Query: 623 NSLE 626
++
Sbjct: 473 EKMQ 476
Score = 38 (18.4 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 624 SLEVSSSQIRSSPAKQKTLDSFLKRCNNV 652
S+ VSSS+ ++ K+ TL F ++ N V
Sbjct: 583 SIPVSSSKKKTLTGKKSTL--FTEKNNEV 609
>UNIPROTKB|E2RK04 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0005622 GO:GO:0004386
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00630000089754
OMA:ACTEAVI EMBL:AAEX03011911 EMBL:AAEX03011910
Ensembl:ENSCAFT00000008142 Uniprot:E2RK04
Length = 1069
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 204/475 (42%), Positives = 302/475 (63%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVL 220
++ D +P + +KLLPFQ+DG+ FAL+ GR ++ADEMGLGKTIQAIAVA +++ WP+L
Sbjct: 25 KQLDFLPDKLRAKLLPFQKDGIAFALRRDGRCMVADEMGLGKTIQAIAVAYFYKEEWPLL 84
Query: 221 ILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
I+ PSSLR W I++W+ + P +I V+ N++ +S++ + + G +
Sbjct: 85 IVVPSSLRYPWTEEIEKWIPELGPEDINVI------QNKTDVGRISTS---KVTILG-YG 134
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
+++ D L ++L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL
Sbjct: 135 LLTTDAET-LIDVLNNQNFKVVIVDESHYMKSRNATRSKILLPIVQKAKRAILLTGTPAL 193
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIY-----QGASNHEELHNLMKAT 392
RP ELF Q+EAL+P + EY RYC + FG +GASN ELH L+ +
Sbjct: 194 GRPEELFMQIEALFPQKFGTWTEYAKRYCNAHIRFFGRRPQWDCRGASNLNELHQLL-SD 252
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
+MIRRLK DVL QLP K RQ++ D+ +++ + F E E + +KA S +
Sbjct: 253 IMIRRLKNDVLTQLPPKVRQRIPFDLPSAAAKELNSSFEEWEKL---MKAPNSG----AT 305
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKV 511
K T LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K
Sbjct: 306 K-TVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIESKT 364
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
IRIDG P + R LV +FQ+ D + A+LS++A G GLT TAA+ V+FAEL W PG
Sbjct: 365 RYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATYVVFAELYWDPGH 424
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
+ QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + L+
Sbjct: 425 IKQAEDRAHRIGQCSSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQLQ 479
>MGI|MGI:1918362 [details] [associations]
symbol:Zranb3 "zinc finger, RAN-binding domain containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036292 "DNA
rewinding" evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048478 "replication fork protection" evidence=ISO] [GO:0070530
"K63-linked polyubiquitin binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001876 InterPro:IPR002711
Pfam:PF00176 Pfam:PF00271 Pfam:PF01844 PROSITE:PS01358
PROSITE:PS50199 PROSITE:PS51194 SMART:SM00490 SMART:SM00547
MGI:MGI:1918362 GO:GO:0005524 GO:GO:0009411 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006281 GO:GO:0043596
GO:GO:0004386 InterPro:IPR003615 SMART:SM00507 GO:GO:0004520
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0045910 GO:GO:0031297 GO:GO:0048478
GO:GO:0070530 GeneTree:ENSGT00630000089754 HSSP:Q9ES54 CTD:84083
GO:GO:0036292 HOGENOM:HOG000031233 HOVERGEN:HBG062387 OMA:ACTEAVI
EMBL:AK050039 EMBL:AK083641 EMBL:BC066035 EMBL:BC117921
EMBL:BC117922 IPI:IPI00676562 RefSeq:NP_081954.1 UniGene:Mm.425048
ProteinModelPortal:Q6NZP1 SMR:Q6NZP1 PhosphoSite:Q6NZP1
PRIDE:Q6NZP1 Ensembl:ENSMUST00000086614 GeneID:226409
KEGG:mmu:226409 UCSC:uc007cld.1 InParanoid:Q6NZP1 OrthoDB:EOG42820X
NextBio:378126 Bgee:Q6NZP1 CleanEx:MM_ZRANB3 Genevestigator:Q6NZP1
Uniprot:Q6NZP1
Length = 1069
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 199/474 (41%), Positives = 297/474 (62%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
D +P + +KLLPFQ+DG+ FAL+ GR ++ADEMGLGKTIQAIA+A +++ WP+LI+
Sbjct: 27 DFLPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVV 86
Query: 224 PSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIIS 282
PSSLR W +++W+ + P EI VV+++ T + + + G + +++
Sbjct: 87 PSSLRYPWIEELEKWIPELEPEEINVVMNK---------TDIGRIPGSRVTVLG-YGLLT 136
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
D L + L + NF++VI DESH++K+ A R+ LP+++KA+ A+LL+GTPAL RP
Sbjct: 137 TDAETLL-DALNTQNFRVVIVDESHYMKSRTAARSKILLPMVQKARRAILLTGTPALGRP 195
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIYQ-----GASNHEELHNLMKATVMI 395
ELF Q+EAL+P + EY RYC V FG + GASN ELH L+ +MI
Sbjct: 196 EELFMQIEALFPQKFGTWIEYAKRYCNAHVRYFGKRRQWDCRGASNLSELHQLLN-DIMI 254
Query: 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455
RRLK +VL+QLP K RQ++ D+ ++++ A F E + K+ + ++ T
Sbjct: 255 RRLKSEVLSQLPPKVRQRIPFDLPPAAVKELNASFEEWQ----KLMRAPNSGAME----T 306
Query: 456 EKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCI 514
LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K I
Sbjct: 307 VMGLITRMFKQTAIAKAGAVKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYI 366
Query: 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQ 574
RIDG P + R LV +FQ+ D + A+LS++A G GLT TAAS V+FAEL W PG + Q
Sbjct: 367 RIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQ 426
Query: 575 AEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS 628
AEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + L+ +
Sbjct: 427 AEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKLQAT 480
>UNIPROTKB|E1BB03 [details] [associations]
symbol:ZRANB3 "DNA annealing helicase and endonuclease
ZRANB3" species:9913 "Bos taurus" [GO:0048478 "replication fork
protection" evidence=ISS] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISS] [GO:0036292 "DNA rewinding"
evidence=ISS] [GO:0031297 "replication fork processing"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0043596 "nuclear
replication fork" evidence=ISS] [GO:0070530 "K63-linked
polyubiquitin binding" evidence=ISS] [GO:0036310 "annealing
helicase activity" evidence=ISS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0009411 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0043596 GO:GO:0004386 InterPro:IPR003615
SMART:SM00507 GO:GO:0004520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0045910 GO:GO:0031297
GO:GO:0048478 GO:GO:0070530 EMBL:DAAA02005001 EMBL:DAAA02005002
IPI:IPI00698723 RefSeq:XP_002685457.1 RefSeq:XP_003581888.1
GeneID:529922 KEGG:bta:529922 CTD:84083 GO:GO:0036292
Uniprot:E1BB03
Length = 1074
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 198/475 (41%), Positives = 296/475 (62%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVL 220
++ D +P + +KLLPFQ+DG+ FAL+ GR ++ADEMGLGKT+QAI +A +++ WP+L
Sbjct: 24 KQLDFLPDKLRAKLLPFQKDGITFALRRDGRCMVADEMGLGKTVQAIGIAYFYKEEWPLL 83
Query: 221 ILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
I+ PSSLR W I++W+ + P EI V+ N++ +S++ + + G +
Sbjct: 84 IVVPSSLRYPWTEEIEKWIPELSPEEINVI------QNKTDVGRISTS---KVTVLG-YG 133
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
+++ D L + L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL
Sbjct: 134 LLTTDAET-LIDALNNQNFKVVIVDESHYMKSRSATRSRILLPIVQKAKRAILLTGTPAL 192
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIY-----QGASNHEELHNLMKAT 392
RP ELF Q+EAL+P + EY RYC V FG +GASN ELH L+ +
Sbjct: 193 GRPEELFMQIEALFPQKFGTWTEYAKRYCNAHVRYFGRRSQWDCRGASNLNELHQLL-SD 251
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
+MIRRLK +VL QLP K RQ++ D+ +++ + F E E K+ +
Sbjct: 252 IMIRRLKTEVLTQLPPKIRQRIPFDLPSAAAKELNSSFEEWE----KLM----RDPYSGA 303
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKV 511
T LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K
Sbjct: 304 TETVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKT 363
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
IRIDG P + R LV +FQ+ + + A+LS++A G GLT TAA+ V+FAEL W PG
Sbjct: 364 RYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVFAELYWDPGH 423
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
+ QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + L+
Sbjct: 424 IKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKLQ 478
>UNIPROTKB|Q5FWF4 [details] [associations]
symbol:ZRANB3 "DNA annealing helicase and endonuclease
ZRANB3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0036292 "DNA rewinding"
evidence=IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IDA]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0070530
"K63-linked polyubiquitin binding" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009411 "response to UV" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IDA] [GO:0048478 "replication fork
protection" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0009411 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0043596 EMBL:CH471058 GO:GO:0004386
InterPro:IPR003615 SMART:SM00507 GO:GO:0004520 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0045910 GO:GO:0031297 GO:GO:0048478
GO:GO:0070530 CTD:84083 GO:GO:0036292 EMBL:AL136824 EMBL:AK095362
EMBL:AK131303 EMBL:AK304601 EMBL:BX647838 EMBL:AC012450
EMBL:AC016742 EMBL:AC017031 EMBL:AC020602 EMBL:AC064850
EMBL:BC064616 EMBL:BC089429 IPI:IPI00030279 IPI:IPI00796701
IPI:IPI00926904 RefSeq:NP_115519.2 UniGene:Hs.658422
ProteinModelPortal:Q5FWF4 SMR:Q5FWF4 PhosphoSite:Q5FWF4
DMDM:74741477 PRIDE:Q5FWF4 DNASU:84083 Ensembl:ENST00000264159
Ensembl:ENST00000401392 Ensembl:ENST00000412849
Ensembl:ENST00000452187 GeneID:84083 KEGG:hsa:84083 UCSC:uc002tuk.3
UCSC:uc002tul.3 GeneCards:GC02M135894 HGNC:HGNC:25249 HPA:HPA043073
HPA:HPA043301 neXtProt:NX_Q5FWF4 PharmGKB:PA134871612
HOGENOM:HOG000031233 HOVERGEN:HBG062387 InParanoid:Q5FWF4
OMA:ACTEAVI ChiTaRS:ZRANB3 GenomeRNAi:84083 NextBio:73311
ArrayExpress:Q5FWF4 Bgee:Q5FWF4 CleanEx:HS_ZRANB3
Genevestigator:Q5FWF4 Uniprot:Q5FWF4
Length = 1079
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 197/472 (41%), Positives = 293/472 (62%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
D +P + +KLLPFQ+DG+ FAL+ GR ++ADEMGLGKTIQAI + +++ WP+LI+
Sbjct: 27 DFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPLLIVV 86
Query: 224 PSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIIS 282
PSSLR W I++W+ + P EI V+ N++ +S++ + + G + +++
Sbjct: 87 PSSLRYPWTEEIEKWIPELSPEEINVI------QNKTDVRRMSTS---KVTVLG-YGLLT 136
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
D L + L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL RP
Sbjct: 137 ADAKT-LIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRP 195
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIY-----QGASNHEELHNLMKATVMI 395
ELF Q+EAL+P + +Y RYC + FG +GASN ELH L+ + +MI
Sbjct: 196 EELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL-SDIMI 254
Query: 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455
RRLK +VL QLP K RQ++ D+ +++ F E E KI + ++ T
Sbjct: 255 RRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWE----KIMRTPNSGAME----T 306
Query: 456 EKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCI 514
LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K I
Sbjct: 307 VMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYI 366
Query: 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQ 574
RIDG + R LV +FQ+ D + A+LS++A G GLT TAAS V+FAEL W PG + Q
Sbjct: 367 RIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQ 426
Query: 575 AEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
AEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + ++
Sbjct: 427 AEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ 478
>UNIPROTKB|F5GYN7 [details] [associations]
symbol:ZRANB3 "Endonuclease ZRANB3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0005622 GO:GO:0004386
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC012450 EMBL:AC016742
EMBL:AC017031 EMBL:AC020602 EMBL:AC064850 HGNC:HGNC:25249
ChiTaRS:ZRANB3 IPI:IPI01013366 ProteinModelPortal:F5GYN7 SMR:F5GYN7
Ensembl:ENST00000536680 ArrayExpress:F5GYN7 Bgee:F5GYN7
Uniprot:F5GYN7
Length = 1077
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 194/472 (41%), Positives = 290/472 (61%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
D +P + +KLLPFQ+DG+ FAL+ G + D+MGLGKTIQAI + +++ WP+LI+
Sbjct: 27 DFLPDRLRAKLLPFQKDGIIFALKRNGSRIDCDQMGLGKTIQAIGITYFYKEEWPLLIVV 86
Query: 224 PSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIIS 282
PSSLR W I++W+ + P EI V+ N++ +S++ + + G + +++
Sbjct: 87 PSSLRYPWTEEIEKWIPELSPEEINVI------QNKTDVRRMSTS---KVTVLG-YGLLT 136
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
D L + L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL RP
Sbjct: 137 ADAKT-LIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRP 195
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIY-----QGASNHEELHNLMKATVMI 395
ELF Q+EAL+P + +Y RYC + FG +GASN ELH L+ + +MI
Sbjct: 196 EELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL-SDIMI 254
Query: 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455
RRLK +VL QLP K RQ++ D+ +++ F E E KI + ++ T
Sbjct: 255 RRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWE----KIMRTPNSGAME----T 306
Query: 456 EKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCI 514
LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K I
Sbjct: 307 VMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYI 366
Query: 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQ 574
RIDG + R LV +FQ+ D + A+LS++A G GLT TAAS V+FAEL W PG + Q
Sbjct: 367 RIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQ 426
Query: 575 AEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
AEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + ++
Sbjct: 427 AEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ 478
>DICTYBASE|DDB_G0274965 [details] [associations]
symbol:DDB_G0274965 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 dictyBase:DDB_G0274965 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0016568 EMBL:AAFI02000012
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K14440 RefSeq:XP_644229.1
EnsemblProtists:DDB0233438 GeneID:8619658 KEGG:ddi:DDB_G0274965
InParanoid:Q554U4 Uniprot:Q554U4
Length = 1400
Score = 866 (309.9 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 197/512 (38%), Positives = 306/512 (59%)
Query: 165 QIPAHIESKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
+IP + S LLPFQ + F Q G+ L+ DEMGLGKTIQA+A+++ +R WP+LI+
Sbjct: 708 RIPVELFSTLLPFQMKSLSFCTQQLSGKCLIGDEMGLGKTIQALAISSYYRSEWPLLIIC 767
Query: 224 PSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISY 283
PSSLRL W+ +++W P +I V+++ G +++ + + NI SY
Sbjct: 768 PSSLRLSWSKEVEKWF--PSVDINVIMT---GEDKA---------------NAMVNICSY 807
Query: 284 DVVLKL-QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
D+V +L + L+ FK +I DESH++KN++AKRT L ++ A+ +LL+GTPALSRP
Sbjct: 808 DLVGRLLEKELLPRAFKAIICDESHYMKNSEAKRTKNVLKLVHTAKIRILLTGTPALSRP 867
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKG--GVFGI-YQGASNHEELHNLMKATVMIRRLK 399
+ELF Q+ AL +Y ++++G RYC G++G Y G S+ +EL+ L++ VMIRRLK
Sbjct: 868 VELFPQMLALGASIYPTLNDFGLRYCNAFKGIYGWDYTGNSHLQELYVLIRG-VMIRRLK 926
Query: 400 KDVLAQLPVKRRQQVFLDV-AEKDMR-QIYALFRELEVVKGKIKACKSEEEVQSLKFT-- 455
DVL LP K R +V +D KD++ ++ ++F + + I+ + + S+
Sbjct: 927 NDVLKDLPPKVRIKVVVDTPTPKDVQNEVGSVFSKSNKLS-MIQQFQKQPNANSIGGGGG 985
Query: 456 --EKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC 513
+K+ I +Y ++ AK+ A DY+ +I+ KFL+FAHH +++ + +
Sbjct: 986 GGQKDKIMHLYVETGRAKLKASSDYIINLIKKNEKFLVFAHHADIMNGLEEAIKSTGAGY 1045
Query: 514 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLI 573
IRIDG TP RQA VT+FQ K A+LS+ A G GLTLTA++ V+F EL WTPG L
Sbjct: 1046 IRIDGSTPAVQRQAFVTKFQNNASCKVALLSITAAGTGLTLTASNLVVFVELYWTPGVLR 1105
Query: 574 QAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
QAEDR HRIGQ + ++YL+ +T+DD +W + +KLE LG+ LDG E L + +R
Sbjct: 1106 QAEDRIHRIGQTKTCYIHYLIGKNTLDDRIWPTICNKLEVLGETLDGQEEVLHTQNLDMR 1165
Query: 634 SSPAKQKTLDS-FLKRCNNVD-DSEHQQKLKY 663
+ T++ F+ + +D + E +L +
Sbjct: 1166 G---RVNTINKYFIGKDGTIDLEKEDTDELVF 1194
Score = 43 (20.2 bits), Expect = 1.8e-87, Sum P(2) = 1.8e-87
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 68 KEQVPKLSVKFFLHTSGNIAAKFTYDPV------LVSAFRKIPKATWNAKERLWTFP 118
+ Q ++ + F L+ I + P+ ++ F++ K T KE +W FP
Sbjct: 583 RNQAHQIIIDFQLYDLDIIGTTYPVPPIVGETEEILQQFKQ-SKGTRFEKEEIWKFP 638
>DICTYBASE|DDB_G0281559 [details] [associations]
symbol:DDB_G0281559 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 dictyBase:DDB_G0281559 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016568
EMBL:AAFI02000042 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 RefSeq:XP_640643.1 ProteinModelPortal:Q54TE8
EnsemblProtists:DDB0214904 GeneID:8623254 KEGG:ddi:DDB_G0281559
InParanoid:Q54TE8 OMA:ENTIRRH Uniprot:Q54TE8
Length = 1021
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 206/513 (40%), Positives = 310/513 (60%)
Query: 168 AHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227
+ + S LLPFQ G+ F ++ GGR L+AD+MGLGKTIQ I++A +++ WP+LI+ PSSL
Sbjct: 339 SELPSTLLPFQIKGIEFGIEKGGRCLIADDMGLGKTIQGISIAYHYKEEWPLLIIAPSSL 398
Query: 228 RLHWAAMIQQWL--NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDV 285
RL WA I+++ I SEI +V++ + G L+G+ NIISYD+
Sbjct: 399 RLVWADQIEKFFPNKIQSSEINLVMN-----GKCG-------------LNGMINIISYDL 440
Query: 286 VLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIEL 345
V K ++ ++ NFK+VIADE H++K ++R+ +T ++K+++ +LLSGTPALSRP+EL
Sbjct: 441 VTKKKDQILQKNFKVVIADECHYIKQFNSQRSKSTAEVLKRSKRCILLSGTPALSRPMEL 500
Query: 346 FKQLEALYPDVYKNVHEYGNRYCKGG----VFGIYQGASNHEELHNLMKATVMIRRLKKD 401
F Q+ + P + +Y RYC F G SN +EL NL T MIRRLK D
Sbjct: 501 FIQISCINP-YFMQWRDYAFRYCAAFQEKFCFNT-SGCSNMKEL-NLYLNTFMIRRLKDD 557
Query: 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF--TEKNL 459
V+ +LP KRR+++ + + + ++++ E+ + K+ + + S K + + L
Sbjct: 558 VMTELPEKRRERILVKLDKTKLKEVQKTLVEINQHR-KVYLDPNTDMKTSFKNKNSRQGL 616
Query: 460 INKIYTDSAEAKIPAVLDYL-ETVIEAGC--KFLIFAHHQPMLDAI-HQLFL----KKKV 511
K+ D+ K+ AV +L E +++A KFLIFAHH+ +++ I H L KKK+
Sbjct: 617 FFKLLRDTGLYKLTAVTQFLKEKLVDAPIDQKFLIFAHHKEVINGIVHMLGKIKVDKKKL 676
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
I+IDG TP +R V +FQ + + AVLS+ A G GLTLTAA+ VIFAELSWTPG
Sbjct: 677 EFIKIDGSTPAQNRNDYVNDFQNDPNCRVAVLSITAAGTGLTLTAATCVIFAELSWTPGV 736
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
L QAEDRAHR GQ SSV V YL+A TVD+++W +V SK LG+VLD E+ +++
Sbjct: 737 LFQAEDRAHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLDD-EDGQSLNAED 795
Query: 632 IRSSPAKQKTLDSFLKRC-NNVDDSEHQQKLKY 663
++++D F+ V++ + +K KY
Sbjct: 796 AGQLEHGEQSVDDFIDSLIKKVEEQDQIRKKKY 828
>ZFIN|ZDB-GENE-060712-1 [details] [associations]
symbol:zranb3 "zinc finger, RAN-binding domain
containing 3" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060712-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 HOVERGEN:HBG054110
EMBL:BC078216 IPI:IPI00496409 UniGene:Dr.132615
HOGENOM:HOG000147805 InParanoid:Q6DC67 Uniprot:Q6DC67
Length = 541
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 199/471 (42%), Positives = 285/471 (60%)
Query: 166 IPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225
+P + KL+PFQR+GV FAL GR ++ADEMGLGKTIQAI+VA F+ WP+LI+ PS
Sbjct: 26 LPQKLREKLMPFQREGVCFALSRNGRCMIADEMGLGKTIQAISVAYIFKQEWPLLIVVPS 85
Query: 226 SLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYD 284
SL+ W +++W+ + P +I +V S+ T+ S +K + + G + +++ D
Sbjct: 86 SLKYPWIEELEKWIPELDPRDINLVESKTD-------TMSISTSK--VTILG-YGLLTTD 135
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
L+ L F +V+ DESH+LK+ A R+ +PII+ A+ A+LL+GTPAL RP E
Sbjct: 136 ARALLE-ALNKQRFAVVLVDESHYLKSRNAARSKILVPIIQSAKRAILLTGTPALGRPEE 194
Query: 345 LFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIYQ-----GASNHEELHNLMKATVMIRR 397
LF Q++ALYP + +Y N+YC FG + GAS+ +ELH + + +MIRR
Sbjct: 195 LFMQIDALYPRRFGTWSDYANKYCNAHYRYFGARRQWDCRGASHLDELHKRL-SEIMIRR 253
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE- 456
LK VL QLP K RQ++ D+ + ++ A F + E K SE E Q F E
Sbjct: 254 LKNQVLTQLPPKIRQRIPFDLPKDAAKEASASFEQWE------KLMSSESENQ---FVEV 304
Query: 457 KNLINKIYTDSAEAKIPAVLDYLETVIEAG-CKFLIFAHHQPMLDAIHQLFLKKKVHCIR 515
+LI +Y +A AK AV DY++ ++E+ KFL+FAHH ML A + ++ K IR
Sbjct: 305 MSLITHMYKQTAVAKAGAVKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIR 364
Query: 516 IDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQA 575
IDG P A R LV FQ D + AVLS++A G GLT TAAS V+FAEL W PG + QA
Sbjct: 365 IDGSVPSAERIQLVHRFQNDPDTRVAVLSIQAAGQGLTFTAASHVVFAELYWNPGHIKQA 424
Query: 576 EDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
EDRAHRIGQ ++V+++YL+A T D ++W ++ K G L+G + L+
Sbjct: 425 EDRAHRIGQTATVHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKKEYLK 475
>GENEDB_PFALCIPARUM|PF13_0308 [details] [associations]
symbol:PF13_0308 "DNA helicase" species:5833
"Plasmodium falciparum" [GO:0003678 "DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 EMBL:AL844509 RefSeq:XP_001350286.1
ProteinModelPortal:Q8IDD0 EnsemblProtists:PF13_0308:mRNA
GeneID:814271 KEGG:pfa:PF13_0308 EuPathDB:PlasmoDB:PF3D7_1357500
HOGENOM:HOG000281688 ProtClustDB:CLSZ2433477 Uniprot:Q8IDD0
Length = 906
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 191/483 (39%), Positives = 293/483 (60%)
Query: 161 EKYDQIPAH-IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPV 219
+K D + + +L FQR+GV F L+ GR+L+ DEMGLGKT+QA+A+ ++D WP
Sbjct: 339 DKLDHLLGEKLSVELRNFQREGVFFGLKKNGRVLIGDEMGLGKTLQALALMAFYKDDWPF 398
Query: 220 LILTPSSLRLHWAAMIQQWLN--IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
+++ PSS+R W +WL+ I I VV ++G T + SNTK
Sbjct: 399 IVVCPSSIRFQWKDQALRWLSHLIREEHICVV--------KNGKTDIPSNTK-------- 442
Query: 278 FNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
IISY+++ K N +K +I DESH+LKN+ +KRT PIIK A+ +LLSGTP
Sbjct: 443 MIIISYELITK--NDKYQDKYKSIICDESHYLKNSLSKRTKVITPIIKNAKRCVLLSGTP 500
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI---YQGASNHEELHNLMKAT 392
AL++P EL++Q+ ++ P+ + N HE+ +RYC ++ Y G + EELH + T
Sbjct: 501 ALNKPSELYEQISSIMPNFF-NYHEFCDRYCFKDKNLYTKKIEYVGCKHTEELHLFLTNT 559
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKG----KIKAC--KSE 446
+MIRRLKKDVL +LP K R ++ +++ +K++ +I +++LE K I +
Sbjct: 560 IMIRRLKKDVLKELPDKLRSKIPVEIPQKELSEILNYYKKLESKKNINFHDIDNIHLSNW 619
Query: 447 EEVQSLKFTEKNL-INKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQL 505
+S ++NL I+ ++ + AK+ A+ +Y+ +I+A KFL+F HH+ ++D +
Sbjct: 620 SNSKSEDGDDENLSISHLFKITGYAKVKAIKEYISYLIDADIKFLLFCHHKLVMDEVETF 679
Query: 506 FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL 565
++K IR+DG TP R+ + FQ D+VK A+LS+ A G+GL LTAA+TV+F EL
Sbjct: 680 LKEQKCSYIRVDGLTPMEKREIYIKNFQNDDNVKIALLSITACGMGLNLTAANTVVFGEL 739
Query: 566 SWTPGDLIQAEDRAHRIGQVSSV-NVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W PG +IQAEDRAHRIG V N++YL+A +T+D+IVW ++ K L L+G E+S
Sbjct: 740 FWVPGQIIQAEDRAHRIGTAHDVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGIEDS 799
Query: 625 LEV 627
L V
Sbjct: 800 LNV 802
>UNIPROTKB|Q8IDD0 [details] [associations]
symbol:PF13_0308 "DNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
EMBL:AL844509 RefSeq:XP_001350286.1 ProteinModelPortal:Q8IDD0
EnsemblProtists:PF13_0308:mRNA GeneID:814271 KEGG:pfa:PF13_0308
EuPathDB:PlasmoDB:PF3D7_1357500 HOGENOM:HOG000281688
ProtClustDB:CLSZ2433477 Uniprot:Q8IDD0
Length = 906
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 191/483 (39%), Positives = 293/483 (60%)
Query: 161 EKYDQIPAH-IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPV 219
+K D + + +L FQR+GV F L+ GR+L+ DEMGLGKT+QA+A+ ++D WP
Sbjct: 339 DKLDHLLGEKLSVELRNFQREGVFFGLKKNGRVLIGDEMGLGKTLQALALMAFYKDDWPF 398
Query: 220 LILTPSSLRLHWAAMIQQWLN--IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
+++ PSS+R W +WL+ I I VV ++G T + SNTK
Sbjct: 399 IVVCPSSIRFQWKDQALRWLSHLIREEHICVV--------KNGKTDIPSNTK-------- 442
Query: 278 FNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
IISY+++ K N +K +I DESH+LKN+ +KRT PIIK A+ +LLSGTP
Sbjct: 443 MIIISYELITK--NDKYQDKYKSIICDESHYLKNSLSKRTKVITPIIKNAKRCVLLSGTP 500
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI---YQGASNHEELHNLMKAT 392
AL++P EL++Q+ ++ P+ + N HE+ +RYC ++ Y G + EELH + T
Sbjct: 501 ALNKPSELYEQISSIMPNFF-NYHEFCDRYCFKDKNLYTKKIEYVGCKHTEELHLFLTNT 559
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKG----KIKAC--KSE 446
+MIRRLKKDVL +LP K R ++ +++ +K++ +I +++LE K I +
Sbjct: 560 IMIRRLKKDVLKELPDKLRSKIPVEIPQKELSEILNYYKKLESKKNINFHDIDNIHLSNW 619
Query: 447 EEVQSLKFTEKNL-INKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQL 505
+S ++NL I+ ++ + AK+ A+ +Y+ +I+A KFL+F HH+ ++D +
Sbjct: 620 SNSKSEDGDDENLSISHLFKITGYAKVKAIKEYISYLIDADIKFLLFCHHKLVMDEVETF 679
Query: 506 FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL 565
++K IR+DG TP R+ + FQ D+VK A+LS+ A G+GL LTAA+TV+F EL
Sbjct: 680 LKEQKCSYIRVDGLTPMEKREIYIKNFQNDDNVKIALLSITACGMGLNLTAANTVVFGEL 739
Query: 566 SWTPGDLIQAEDRAHRIGQVSSV-NVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W PG +IQAEDRAHRIG V N++YL+A +T+D+IVW ++ K L L+G E+S
Sbjct: 740 FWVPGQIIQAEDRAHRIGTAHDVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGIEDS 799
Query: 625 LEV 627
L V
Sbjct: 800 LNV 802
>UNIPROTKB|H7BYI2 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC098820 HGNC:HGNC:11102
ProteinModelPortal:H7BYI2 Ensembl:ENST00000392128 Bgee:H7BYI2
Uniprot:H7BYI2
Length = 796
Score = 581 (209.6 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 139/331 (41%), Positives = 199/331 (60%)
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGA 379
+I A+ +LLSGTPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+
Sbjct: 410 VIIVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGS 469
Query: 380 SNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
SN EL L++ VM+RRLK DVL+QLP K+R+ V + + R AL + + K
Sbjct: 470 SNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTK 529
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPM 498
K + +++ L F N+ +AEAKIP+V++Y+ ++E+G KFL+FAHH+ +
Sbjct: 530 DKTKQQQKDALILFF------NR----TAEAKIPSVIEYILDLLESGREKFLVFAHHKVV 579
Query: 499 LDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558
LDAI Q +K V IRIDG T A R+ L +FQ + AVLS+ A +GLT ++A
Sbjct: 580 LDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSAD 639
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 618
V+FAEL W PG LIQAEDR HRIGQ SSV ++YL+A T DD +W +++ K++ L +
Sbjct: 640 LVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAG 699
Query: 619 DGHENSLEVSSSQ--IRSSPAKQKTLDSFLK 647
N E++ S + P +QK D F K
Sbjct: 700 LSETNFSEMTESTDYLYKDPKQQKIYDLFQK 730
Score = 286 (105.7 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 90/281 (32%), Positives = 139/281 (49%)
Query: 54 SVAPAPKGSLGDFSKEQVPKLS-VK--FFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNA 110
S +P+ S G P LS VK L + A +Y L++ F+++ ++
Sbjct: 173 SESPSTS-SEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDV 231
Query: 111 KERLWTFPVPFLSSAEKVLSEISGY-NVEIENLHPLVQRAIASA------SAAPDLREK- 162
K R W+F L K+++++ V+++ L + A AS S PD+ E
Sbjct: 232 KTRKWSF---LLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEAD 288
Query: 163 YDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222
++ + S L+PFQR GV FA+ GGR+LLAD+MGLGKTIQAI +A +R WP+L++
Sbjct: 289 LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVV 348
Query: 223 TPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII 281
PSS+R W +WL ++ P I VV++ G +R T GL NI+
Sbjct: 349 VPSSVRFTWEQAFLRWLPSLSPDCINVVVT---GKDR--LTA------------GLINIV 391
Query: 282 SYDVVLKLQNILMSS-NFKIVIADESHFLKNAQAKRTAATL 321
S+D++ KL+ L + I++A L A A L
Sbjct: 392 SFDLLSKLEKQLKTPFKVVIIVAKRVILLSGTPAMSRPAEL 432
Score = 57 (25.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 54 SVAPAPKGSLGDFSKEQVPK--LSVKFFLHTSGN-IAAKFTYDPVLVSAFRKIPKATWNA 110
SV P +G L S V K S K +G+ Y+ L++ F+ +P ++
Sbjct: 77 SVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDP 136
Query: 111 KERLWTFPVPFLSSAEKVLSEISGYNVE 138
+ W F + S+ K + N++
Sbjct: 137 DTKTWNFSMNDYSALMKAAQSLPTVNLQ 164
>RGD|1564952 [details] [associations]
symbol:Zranb3 "zinc finger, RAN-binding domain containing 3"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0009411 "response to UV" evidence=ISO] [GO:0031297 "replication
fork processing" evidence=ISO] [GO:0036292 "DNA rewinding"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0048478 "replication fork protection"
evidence=ISO] [GO:0070530 "K63-linked polyubiquitin binding"
evidence=ISO] [GO:0003678 "DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1564952 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 IPI:IPI00950819
Ensembl:ENSRNOT00000067965 UCSC:RGD:1564952 ArrayExpress:D3ZVX7
Uniprot:D3ZVX7
Length = 465
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 182/440 (41%), Positives = 273/440 (62%)
Query: 198 MGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGS 256
MGLGKTIQAIA++ +++ WP+LI+ PSSLR W +++W+ + P EI V+ +
Sbjct: 1 MGLGKTIQAIAISYFYKEEWPLLIVVPSSLRYPWIEELEKWIPELEPEEINVI------T 54
Query: 257 NRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
N++ ++ T R + + G + +++ D L+ L NF++VI DESH++K+ A R
Sbjct: 55 NKTDTGRIA--TSR-VTVLG-YGLLTTDAETLLE-ALDRQNFRVVIVDESHYMKSRTAAR 109
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FG 374
+ LP+++KAQ A+LL+GTPAL RP ELF Q+EAL+P + EY RYC + FG
Sbjct: 110 SKILLPMVQKAQRAILLTGTPALGRPEELFMQIEALFPQRFGTWVEYAKRYCNAHIRYFG 169
Query: 375 IYQ-----GASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYAL 429
+ GASN ELH L+ +MIRRLK +VL+QLP K RQ++ D+A ++++ A
Sbjct: 170 KRRQWDCRGASNLSELHQLLN-DIMIRRLKSEVLSQLPPKVRQRIPFDLAPATVKELNAS 228
Query: 430 FRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCK 488
F E + K+ ++ T LI +++ +A AK AV DY++ +++ K
Sbjct: 229 FEEWQ----KLMRAPDAGAME----TVMGLITRMFKQTAIAKAGAVKDYIKMLLQNDSLK 280
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548
FL+FAHH ML A + ++ K IRIDG P + R LV +FQ+ D + A+LS++A
Sbjct: 281 FLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAA 340
Query: 549 GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608
G GLT TAAS V+FAEL W PG + QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++
Sbjct: 341 GQGLTFTAASHVVFAELFWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLN 400
Query: 609 SKLENLGQVLDGHENSLEVS 628
K + G L+G + L+ +
Sbjct: 401 RKAQVTGSTLNGRKEKLQAT 420
>UNIPROTKB|F1S0D5 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070530 "K63-linked polyubiquitin binding"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0036292 "DNA rewinding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0009411 "response
to UV" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001876
InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271 Pfam:PF01844
PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194 SMART:SM00490
SMART:SM00547 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0005622 GO:GO:0004386 GO:GO:0004519 InterPro:IPR003615
SMART:SM00507 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00630000089754 OMA:ACTEAVI EMBL:CU466471
EMBL:CU570637 Ensembl:ENSSSCT00000017094 Uniprot:F1S0D5
Length = 1021
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 177/438 (40%), Positives = 269/438 (61%)
Query: 198 MGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGS 256
MGLGKTIQAI +A +++ WP+LI+ PSSLR W I++W+ + P EI V+
Sbjct: 1 MGLGKTIQAIGIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELGPEEINVI------Q 54
Query: 257 NRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
N++ +S++ + + G + +++ D L + L + NF++VI DESH+LK+ R
Sbjct: 55 NKTDIGEISTS---KVTVLG-YGLLTTDAET-LIDALNNQNFQVVIVDESHYLKSRNT-R 108
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV--FG 374
+ LP+++KA+ A+LL+GTPAL RP ELF Q+EAL+P + +Y RYC V FG
Sbjct: 109 SRILLPVVQKAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWTDYARRYCNAHVRYFG 168
Query: 375 IY-----QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYAL 429
+GASN ELH L+ + +MIRRLK +VL QLP K RQ++ D+ +++ +
Sbjct: 169 KRPQWDCRGASNLNELHQLL-SDIMIRRLKTEVLTQLPPKIRQRIPFDLPSAAAKELNSS 227
Query: 430 FRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCK 488
F E E K+ + +S+ LI +++ +A AK AV DY++ +++ K
Sbjct: 228 FEEWE----KLMRGPNSGATESIM----GLITRMFKQTAIAKAGAVRDYIKMMLQNDSLK 279
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548
FL+FAHH ML A + ++ K +RIDG P + R LV +FQ+ + + A+LS++A
Sbjct: 280 FLVFAHHLSMLQACTEAVIESKTRYVRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAA 339
Query: 549 GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608
G GLT TAA+ V+FAEL W PG + QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++
Sbjct: 340 GQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWAMLN 399
Query: 609 SKLENLGQVLDGHENSLE 626
K + G L+G + L+
Sbjct: 400 RKAQVTGSTLNGRKEKLQ 417
>UNIPROTKB|F1P0X4 [details] [associations]
symbol:SMARCAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 OMA:FKQQNLS EMBL:AADN02016814
IPI:IPI00581881 Ensembl:ENSGALT00000018709 Uniprot:F1P0X4
Length = 704
Score = 733 (263.1 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 177/410 (43%), Positives = 253/410 (61%)
Query: 256 SNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAK 315
S R G T V +K ++ L NIIS+D++ K+ L S+ F++VI DESH+LKN +
Sbjct: 265 SLRPGSTNVIVTSKDSLTAS-LINIISFDLLSKMDKQLKST-FQVVIIDESHYLKNIKTA 322
Query: 316 RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVF 373
R A +P++K A+ +LLSGTPA+SRP EL+ Q+ A+ P + H + RYC K +
Sbjct: 323 RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQIAAVQPGFFPQFHTFALRYCDAKKMPW 382
Query: 374 GI-YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRE 432
G Y G+SN EL L++ ++MIRRLK DVL+QLP K+R+ V VA + I A +
Sbjct: 383 GWDYSGSSNLAELKILLEESIMIRRLKSDVLSQLPAKQRKMVV--VAPEG---INAKTKA 437
Query: 433 LEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLI 491
+ + K K K E Q EK + Y +AEAKI +V++Y+ ++E+G KFL+
Sbjct: 438 MLAAEAK-KMAKGYESKQQ----EKEALLLFYNRTAEAKIHSVIEYILDLLESGKNKFLV 492
Query: 492 FAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551
FAHH+ +LDAI + KK+ IRIDG T A RQ+L +FQ + AVLS+ A +G
Sbjct: 493 FAHHKVVLDAIVEELEKKRFDYIRIDGSTSSAERQSLCQKFQFSEKQAVAVLSLTAANMG 552
Query: 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
LTL+AA V+FAEL W PG LIQAEDRAHRIGQ SSVNV+YL+A T DD +W +++ K+
Sbjct: 553 LTLSAADLVVFAELFWNPGVLIQAEDRAHRIGQTSSVNVHYLVARGTADDFLWPMIQEKI 612
Query: 612 ENLGQV-LD--GHENSLEVSSSQIRSSPAKQKTLDSFLKRC--NNVDDSE 656
+ LG+ L N+ E ++ + P KQKT+ +R ++ DD++
Sbjct: 613 KVLGEAGLSETNFSNTAESTNYYPKPDP-KQKTIYELFQRTFTDSKDDTD 661
Score = 353 (129.3 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 118/387 (30%), Positives = 184/387 (47%)
Query: 92 YDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNVEIENLHPLVQRAIA 151
Y +V F+++ ++ K R W F + KV + +VE+E L V +A A
Sbjct: 112 YSAEVVGVFKQMNSRNYDMKTRKWNFLLEDYPKLMKVFQSL--VSVEVEPLPGTVIQAFA 169
Query: 152 -----SASAAPDLRE-KYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQ 205
S S D + + + I + L+PFQR+GV FA+ GR+LLAD+MGLGKT+Q
Sbjct: 170 AQIQSSTSQKMDFPDVDLSVVDSKIVTSLMPFQREGVNFAILKNGRLLLADDMGLGKTVQ 229
Query: 206 AIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265
AI +A ++ WP+L++TPSS+R WA +WL P S R G T V
Sbjct: 230 AICIAAYYQKEWPLLVVTPSSVRFTWAEAFHRWL--P-------------SLRPGSTNVI 274
Query: 266 SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHF--LKNAQAKRTAATLPI 323
+K ++ L NIIS+D++ K+ L S+ ++I + + +K A+ + L
Sbjct: 275 VTSKDSLTAS-LINIISFDLLSKMDKQLKSTFQVVIIDESHYLKNIKTARCRAAMPLLKA 333
Query: 324 IKKA---QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGA 379
K+ +S L I + +P + Y + K +G Y G+
Sbjct: 334 AKRVILLSGTPAMSRPAELYTQIAAVQP--GFFPQFHTFALRYCD--AKKMPWGWDYSGS 389
Query: 380 SNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK-G 438
SN EL L++ ++MIRRLK DVL+QLP K+R+ V VA + + E K
Sbjct: 390 SNLAELKILLEESIMIRRLKSDVLSQLPAKQRKMVV--VAPEGINAKTKAMLAAEAKKMA 447
Query: 439 KIKACKSEEEVQSLKFTEKNLINKIYT 465
K K +E+ L F + KI++
Sbjct: 448 KGYESKQQEKEALLLFYNRTAEAKIHS 474
Score = 60 (26.2 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 92 YDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNV 137
Y+ L++ F+KIP +++ + W F + SS + +S N+
Sbjct: 18 YNAELIALFKKIPTRSYDPTTKKWDFSLEDYSSFMEAAIHLSSVNL 63
>UNIPROTKB|Q498E7 [details] [associations]
symbol:smarcal1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:8355 "Xenopus laevis" [GO:0000733 "DNA strand renaturation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006259 "DNA
metabolic process" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0036310 "annealing helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 CTD:50485 HOVERGEN:HBG054110 KO:K14440 EMBL:BC100245
RefSeq:NP_001089668.1 UniGene:Xl.6594 ProteinModelPortal:Q498E7
GeneID:734728 KEGG:xla:734728 Xenbase:XB-GENE-866253 Uniprot:Q498E7
Length = 960
Score = 718 (257.8 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 170/399 (42%), Positives = 245/399 (61%)
Query: 268 TKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
T R+ L NIIS+D++ K+ + ++NFK++I DESHFLKN + R A +P++K A
Sbjct: 535 TGRDSQSANLINIISFDLLGKMDKQI-AANFKVIIIDESHFLKNVKTARCKAAMPLLKSA 593
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEE 384
+ +LLSGTPA+SRP EL+ Q+ A+ P + H++G RYC K +G Y G+SN E
Sbjct: 594 KRVMLLSGTPAMSRPAELYTQIAAVRPTFFPRFHDFGIRYCDAKQMPWGWDYSGSSNLNE 653
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFL---DVAEKDMRQIYALFRELEVVKGKIK 441
L L++ ++MIRRLK +VL+QLP K+R+ V + + K + A +E+ K
Sbjct: 654 LKLLLEESIMIRRLKSEVLSQLPAKQRKMVVVAPEGITAKTKAALAAAAKEMA------K 707
Query: 442 ACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLD 500
KS+ VQ EK + Y +AEAKI +VL+Y+ ++E+G KFL+FAHH+ +LD
Sbjct: 708 GFKSK--VQ-----EKEALLLFYNRTAEAKIRSVLEYIIDLLESGREKFLVFAHHKLVLD 760
Query: 501 AIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560
I + KK+V IRIDG T A RQ+L +FQ + AVLS+ A +GLTL++A V
Sbjct: 761 NICEELGKKEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTLSSADLV 820
Query: 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+FAEL W PG LIQAEDR HRIGQ SSVN++YL+A T DD +W +++ K++ LGQ
Sbjct: 821 VFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLS 880
Query: 621 HENSLEVSSSQ--IRSSPAKQKTLDSFLKRCNNVDDSEH 657
N E + S P KQKT+ +R + +E+
Sbjct: 881 EANFSETTESTDYFYKDP-KQKTIYDLFQRSFSEQGAEN 918
Score = 356 (130.4 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 118/389 (30%), Positives = 191/389 (49%)
Query: 92 YDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYN-VEIENL-HPLVQR- 148
Y ++ F+++ ++ K R W+F L +K++ + VE+E L P++Q
Sbjct: 371 YHTEIIGLFKQMNTRNYDTKTRKWSF---MLEDYQKLMESVRNIQQVEVEPLPRPVLQAF 427
Query: 149 AIASASAAPDLREKYDQIPAHIESKLL----PFQRDGVRFALQHGGRILLADEMGLGKTI 204
A L E D +H++SKL+ PFQRDGV FA+ GR+LLAD+MGLGKTI
Sbjct: 428 APQFEKTTISLAEIEDVDLSHVDSKLIGNLMPFQRDGVNFAISREGRLLLADDMGLGKTI 487
Query: 205 QAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTI 263
QAI +A +R WP+L++ PSS+R WA +WL ++ P + V+++ G ++S
Sbjct: 488 QAICIAAYYRKEWPLLVVAPSSVRFTWAEAFHRWLPSLNPESVNVIVT--GRDSQSA--- 542
Query: 264 VSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHF--LKNAQAKRTAATL 321
L NIIS+D++ K+ + ++ I+I + +K A+ K L
Sbjct: 543 ------------NLINIISFDLLGKMDKQIAANFKVIIIDESHFLKNVKTARCKAAMPLL 590
Query: 322 PIIKKAQYAL---LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQ 377
K+ +S L I + +P + Y + K +G Y
Sbjct: 591 KSAKRVMLLSGTPAMSRPAELYTQIAAVRP--TFFPRFHDFGIRYCD--AKQMPWGWDYS 646
Query: 378 GASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFL---DVAEKDMRQIYALFRELE 434
G+SN EL L++ ++MIRRLK +VL+QLP K+R+ V + + K + A +E+
Sbjct: 647 GSSNLNELKLLLEESIMIRRLKSEVLSQLPAKQRKMVVVAPEGITAKTKAALAAAAKEM- 705
Query: 435 VVKGKIKACKSEEEVQSLKFTEKNLINKI 463
KG K+ K +E+ L F + KI
Sbjct: 706 -AKG-FKS-KVQEKEALLLFYNRTAEAKI 731
Score = 70 (29.7 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 31/120 (25%), Positives = 54/120 (45%)
Query: 30 SKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDFSKEQVP--KLSV----KFFLHTS 83
SK + +P K ALP ++T+ +G G S E VP K S + H
Sbjct: 205 SKFYGANPGIK-PALPVSNKTVS---EVRDRGVTGS-SVEAVPVKKASSSTRGRCVKHME 259
Query: 84 GNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGY-NVEIENL 142
G + Y L++ F+ IP ++ ++W F + +S ++SE+ +VE++ L
Sbjct: 260 GRFRVEVGYSAELIALFKTIPSKAYDPATKMWNFGLEDYAS---LMSEVQRVQSVELKAL 316
>RGD|1306134 [details] [associations]
symbol:Smarcal1 "Swi/SNF related matrix associated, actin
dependent regulator of chromatin, subfamily a-like 1" species:10116
"Rattus norvegicus" [GO:0000733 "DNA strand renaturation"
evidence=ISO;ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0036310
"annealing helicase activity" evidence=ISO;ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
RGD:1306134 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 EMBL:CH474004 CTD:50485
HOGENOM:HOG000018734 HOVERGEN:HBG054110 KO:K14440 OrthoDB:EOG4RFKRT
EMBL:BC168154 IPI:IPI00362713 RefSeq:NP_001101692.1
UniGene:Rn.34679 STRING:B4F769 PhosphoSite:B4F769 PRIDE:B4F769
Ensembl:ENSRNOT00000022459 GeneID:316477 KEGG:rno:316477
UCSC:RGD:1306134 NextBio:670913 Genevestigator:B4F769
Uniprot:B4F769
Length = 910
Score = 710 (255.0 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 164/393 (41%), Positives = 235/393 (59%)
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
GL NI+S+D++ KL+ L + FK+VI DESHFLKN + R A +PI+K A+ +LLSG
Sbjct: 479 GLVNIVSFDLLSKLEKQLKTP-FKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSG 537
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKAT 392
TPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+SN EL L++
Sbjct: 538 TPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRLPWGWDYSGSSNLGELKLLLEEA 597
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
VM+RRLK DVL+QLP K+R+ V ++ R K + A E
Sbjct: 598 VMLRRLKSDVLSQLPAKQRKMVVVNPGRISTR-----------AKAALDAAAKEMTKDKT 646
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKV 511
K +K + + +AEAKIP V++Y+ ++E+G KFL+FAHH+ +LDAI + +K V
Sbjct: 647 KQQQKEALLVFFNRTAEAKIPCVIEYILDLLESGREKFLVFAHHKVLLDAIAKELERKNV 706
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
IRIDG TP A R+ L +FQ AVLS+ A +GLT ++A V+FAEL W PG
Sbjct: 707 QHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGV 766
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
LIQAEDR HRIGQ +SV ++YL+A T DD +W +++ K++ LG+ N E++ +
Sbjct: 767 LIQAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEAT 826
Query: 632 --IRSSPAKQKTLDSFLKRCNNVDDSEHQQKLK 662
+ P KQKT+ S ++ DD + L+
Sbjct: 827 DYLYKDP-KQKTIYSLFQQSFE-DDGNDMEFLE 857
Score = 361 (132.1 bits), Expect = 9.1e-30, P = 9.1e-30
Identities = 123/416 (29%), Positives = 193/416 (46%)
Query: 50 TLPLSVAPAPKGSLGDFSKEQVPKLSV---KFFLHTSGNIAAKFTYDPVLVSAFRKIPKA 106
T+ L G+ G S P L+ + L + Y V+++ F+++
Sbjct: 261 TVSLQPLEEVDGTGGQTSLPSAPSLTFVTGRCMLISRARFEVDIGYSEVVIALFKQMESR 320
Query: 107 TWNAKERLWTFPVPFLSSAEKVLSEISGYN-VEIENLHPLVQRAIASASAAPDLREKYDQ 165
++ K R W F L K+++ V+++ L + A AS L+ K D
Sbjct: 321 NYDPKTRKWNF---LLEEHNKLIARSRELKQVQLDPLPKTLTLAFASQLEKTSLQSKADV 377
Query: 166 -------IPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWP 218
+ A + S L+PFQR+GV FA+ GR+LLAD+MGLGKTIQAI +A +R WP
Sbjct: 378 PEADLSGVDAKLVSNLMPFQREGVSFAISKRGRLLLADDMGLGKTIQAICIAAFYRKEWP 437
Query: 219 VLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
+L++ PSS+R W +WL ++ P +I VV++ G R T GL
Sbjct: 438 LLVVVPSSVRFTWEQAFLRWLPSLSPEDINVVVT---GKGR--LTA------------GL 480
Query: 278 FNIISYDVVLKLQNILMSSNFKIVIADESHF--LKNAQAKRTAATLPIIKKA---QYALL 332
NI+S+D++ KL+ L + ++I + +K A+ + L + K+
Sbjct: 481 VNIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSGTPA 540
Query: 333 LSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKA 391
+S L I K +P + Y + K +G Y G+SN EL L++
Sbjct: 541 MSRPAELYTQIIAVKP--TFFPQFHAFGLRYCD--AKRLPWGWDYSGSSNLGELKLLLEE 596
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL-EVVKGKIKACKSE 446
VM+RRLK DVL+QLP K+R+ V ++ R AL E+ K K K + E
Sbjct: 597 AVMLRRLKSDVLSQLPAKQRKMVVVNPGRISTRAKAALDAAAKEMTKDKTKQQQKE 652
Score = 59 (25.8 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 80 LHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNVE 138
L T K Y+ L+ F+ +P +++ + W F + + K + +S +++
Sbjct: 207 LRTGDRFRVKIGYNKELIEVFKSLPSRRYDSFTKTWDFSMSDYRALMKAVERLSTVSLQ 265
>UNIPROTKB|Q0P4U8 [details] [associations]
symbol:smarcal1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0036310 "annealing helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 Pfam:PF07443
PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 HOGENOM:HOG000018734
HOVERGEN:HBG054110 KO:K14440 EMBL:BC121897 RefSeq:NP_001072923.1
UniGene:Str.47258 ProteinModelPortal:Q0P4U8 STRING:Q0P4U8
Ensembl:ENSXETT00000000989 GeneID:780385 KEGG:xtr:780385
Xenbase:XB-GENE-493391 OMA:ARCKAAM Bgee:Q0P4U8 Uniprot:Q0P4U8
Length = 942
Score = 709 (254.6 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 167/398 (41%), Positives = 243/398 (61%)
Query: 268 TKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
T R+ L NI+S+D++ K+ + ++ F+++I DESHFLKN + R A +P++K A
Sbjct: 517 TGRDSQSASLINIVSFDLLGKMDKQI-AATFQVIIIDESHFLKNVKTARCKAAMPLLKSA 575
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEE 384
+ +LLSGTPA+SRP EL+ Q+ A+ P + H++G RYC K +G Y G+SN E
Sbjct: 576 KRVMLLSGTPAMSRPAELYTQIAAVRPSFFPRFHDFGIRYCDAKQMPWGWDYSGSSNLNE 635
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFL---DVAEKDMRQIYALFRELEVVKGKIK 441
L L++ ++MIRRLK +VL+QLP K+R+ V + + K + A +E+ K
Sbjct: 636 LKLLLEESIMIRRLKSEVLSQLPAKQRKMVVVAPEGITAKTKAALAAAAKEMA------K 689
Query: 442 ACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLD 500
KS+ VQ EK + Y +AEAKI +VL+Y+ ++E+G KFL+FAHH+ +LD
Sbjct: 690 GFKSK--VQ-----EKEALLLFYNRTAEAKIRSVLEYIMDLLESGREKFLVFAHHKLVLD 742
Query: 501 AIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560
I + KK V IRIDG T A RQ+L +FQ + AVLS+ A +GLTL++A V
Sbjct: 743 HICEELGKKDVPYIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTLSSADLV 802
Query: 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+FAEL W PG LIQAEDR HRIGQ SSVN++YL+A T DD +W +++ K++ LGQ
Sbjct: 803 VFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLS 862
Query: 621 HENSLEVSSSQ--IRSSPAKQKTLDSFLKRCNNVDDSE 656
N E + S P KQKT+ +R + + +E
Sbjct: 863 EANFSETTESTDYFYKDP-KQKTIYDLFQRSFSEEGAE 899
Score = 366 (133.9 bits), Expect = 2.7e-30, P = 2.7e-30
Identities = 118/386 (30%), Positives = 196/386 (50%)
Query: 92 YDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYN-VEIENL-HPLVQRA 149
Y ++ F+++ ++ K R W+F L +K++ + VE+E L P++Q
Sbjct: 353 YHAEIIGLFKQMNTRNYDTKTRKWSF---MLEDYQKLMESVRNIQQVEVEPLPRPVLQAF 409
Query: 150 IASASAAPDLREKYDQIP-AHIESKL----LPFQRDGVRFALQHGGRILLADEMGLGKTI 204
+RE+ ++ + ++SKL +PFQRDGV FA+ GR+LLAD+MGLGKTI
Sbjct: 410 APQFGKTTIIREEIPEVDLSQVDSKLGSNLMPFQRDGVNFAVSREGRLLLADDMGLGKTI 469
Query: 205 QAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTI 263
QAI +A +R WP+L++ PSS+R WA Q+WL +I P + V+++ + S I
Sbjct: 470 QAICIAAYYRKEWPLLVVAPSSVRFTWAEAFQRWLPSIRPESVNVIVTGRDSQSASLINI 529
Query: 264 VSSNT--KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATL 321
VS + K + + F +I D L+N+ ++ K + LK+A+ +
Sbjct: 530 VSFDLLGKMDKQIAATFQVIIIDESHFLKNV-KTARCKAAMP----LLKSAKRVMLLSGT 584
Query: 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGAS 380
P + + A L + A+ RP + +P + Y + K +G Y G+S
Sbjct: 585 PAMSRP--AELYTQIAAV-RP--------SFFPRFHDFGIRYCD--AKQMPWGWDYSGSS 631
Query: 381 NHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFL---DVAEKDMRQIYALFRELEVVK 437
N EL L++ ++MIRRLK +VL+QLP K+R+ V + + K + A +E+ K
Sbjct: 632 NLNELKLLLEESIMIRRLKSEVLSQLPAKQRKMVVVAPEGITAKTKAALAAAAKEM--AK 689
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKI 463
G K+ K +E+ L F + KI
Sbjct: 690 G-FKS-KVQEKEALLLFYNRTAEAKI 713
Score = 59 (25.8 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 81 HTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGY-NVEI 139
H + Y L++ F+ IP ++ ++W F + +S ++SE+ +VE+
Sbjct: 239 HAESRFRVEVGYSAELIALFKTIPSKNYDPATKMWNFGLEDYAS---LMSEVQQLQSVEL 295
Query: 140 ENLHPLVQRAIASASA 155
+ L + IA A
Sbjct: 296 KALEGMEGVQIAPPPA 311
>UNIPROTKB|Q9NZC9 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA;IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0006259 "DNA metabolic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000733 "DNA strand renaturation" evidence=IDA;IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:CH471063 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094 CTD:50485
HOVERGEN:HBG054110 KO:K14440 OrthoDB:EOG4RFKRT EMBL:AF082179
EMBL:AF210842 EMBL:AF210833 EMBL:AF210834 EMBL:AF210835
EMBL:AF210836 EMBL:AF210837 EMBL:AF210838 EMBL:AF210839
EMBL:AF210840 EMBL:AF210841 EMBL:AF432223 EMBL:AC098820
EMBL:BC016482 EMBL:BC043341 EMBL:AL122076 EMBL:AK000117
IPI:IPI00386311 PIR:T34557 RefSeq:NP_001120679.1 RefSeq:NP_054859.2
UniGene:Hs.516674 ProteinModelPortal:Q9NZC9 SMR:Q9NZC9
IntAct:Q9NZC9 STRING:Q9NZC9 PhosphoSite:Q9NZC9 DMDM:60390962
PRIDE:Q9NZC9 DNASU:50485 Ensembl:ENST00000357276
Ensembl:ENST00000358207 GeneID:50485 KEGG:hsa:50485 UCSC:uc002vgc.4
GeneCards:GC02P217277 HGNC:HGNC:11102 HPA:HPA020337 MIM:242900
MIM:606622 neXtProt:NX_Q9NZC9 Orphanet:1830 PharmGKB:PA35952
InParanoid:Q9NZC9 OMA:FKQQNLS GenomeRNAi:50485 NextBio:53040
ArrayExpress:Q9NZC9 Bgee:Q9NZC9 CleanEx:HS_SMARCAL1
Genevestigator:Q9NZC9 GermOnline:ENSG00000138375 Uniprot:Q9NZC9
Length = 954
Score = 707 (253.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 163/378 (43%), Positives = 234/378 (61%)
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
GL NI+S+D++ KL+ L + FK+VI DESHFLKN++ R A +P++K A+ +LLSG
Sbjct: 522 GLINIVSFDLLSKLEKQLKTP-FKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSG 580
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKAT 392
TPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+SN EL L++
Sbjct: 581 TPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEA 640
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
VM+RRLK DVL+QLP K+R+ V + + R AL + + K K + +++ L
Sbjct: 641 VMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL 700
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKV 511
F N+ +AEAKIP+V++Y+ ++E+G KFL+FAHH+ +LDAI Q +K V
Sbjct: 701 FF------NR----TAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHV 750
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
IRIDG T A R+ L +FQ + AVLS+ A +GLT ++A V+FAEL W PG
Sbjct: 751 QHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGV 810
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
LIQAEDR HRIGQ SSV ++YL+A T DD +W +++ K++ L + N E++ S
Sbjct: 811 LIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTEST 870
Query: 632 --IRSSPAKQKTLDSFLK 647
+ P +QK D F K
Sbjct: 871 DYLYKDPKQQKIYDLFQK 888
Score = 358 (131.1 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 127/419 (30%), Positives = 201/419 (47%)
Query: 54 SVAPAPKGSLGDFSKEQVPKLS-VK--FFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNA 110
S +P+ S G P LS VK L + A +Y L++ F+++ ++
Sbjct: 309 SESPSTS-SEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDV 367
Query: 111 KERLWTFPVPFLSSAEKVLSEISGY-NVEIENLHPLVQRAIASA------SAAPDLREK- 162
K R W+F L K+++++ V+++ L + A AS S PD+ E
Sbjct: 368 KTRKWSF---LLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDVPEAD 424
Query: 163 YDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222
++ + S L+PFQR GV FA+ GGR+LLAD+MGLGKTIQAI +A +R WP+L++
Sbjct: 425 LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVV 484
Query: 223 TPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII 281
PSS+R W +WL ++ P I VV++ G +R T GL NI+
Sbjct: 485 VPSSVRFTWEQAFLRWLPSLSPDCINVVVT---GKDR--LTA------------GLINIV 527
Query: 282 SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAA--TLPIIKKA---QYALLLSGT 336
S+D++ KL+ L + ++I + + A+ AA L + K+ +S
Sbjct: 528 SFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRP 587
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKATVMI 395
L I K +P + Y + K +G Y G+SN EL L++ VM+
Sbjct: 588 AELYTQIIAVKP--TFFPQFHAFGLRYCD--AKRMPWGWDYSGSSNLGELKLLLEEAVML 643
Query: 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
RRLK DVL+QLP K+R+ V + + R AL + + K K + +++ L F
Sbjct: 644 RRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFF 702
Score = 57 (25.1 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 54 SVAPAPKGSLGDFSKEQVPK--LSVKFFLHTSGN-IAAKFTYDPVLVSAFRKIPKATWNA 110
SV P +G L S V K S K +G+ Y+ L++ F+ +P ++
Sbjct: 213 SVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDP 272
Query: 111 KERLWTFPVPFLSSAEKVLSEISGYNVE 138
+ W F + S+ K + N++
Sbjct: 273 DTKTWNFSMNDYSALMKAAQSLPTVNLQ 300
>ZFIN|ZDB-GENE-041210-303 [details] [associations]
symbol:smarcal1 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily
a-like 1" species:7955 "Danio rerio" [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IMP] [GO:0001525
"angiogenesis" evidence=IMP] [GO:0010172 "embryonic body
morphogenesis" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
[GO:0030097 "hemopoiesis" evidence=IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0036310
"annealing helicase activity" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 Pfam:PF07443
PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
ZFIN:ZDB-GENE-041210-303 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0001525 GO:GO:0016568 GO:GO:0051216
GO:GO:0004386 GO:GO:0030097 GO:GO:0048589 GO:GO:0010172
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0008094 GO:GO:0022402 CTD:50485
HOGENOM:HOG000018734 HOVERGEN:HBG054110 KO:K14440 EMBL:EU655703
IPI:IPI00896289 RefSeq:NP_001120938.1 UniGene:Dr.105797
GeneID:560412 KEGG:dre:560412 NextBio:20883429 Uniprot:B2ZFP3
Length = 807
Score = 707 (253.9 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 163/385 (42%), Positives = 235/385 (61%)
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
GL NIISYD++ K+ SS F ++I DESHFLKN + R A LP++K A+ +LLSG
Sbjct: 425 GLINIISYDLLNKMDKQPPSSPFNVIIMDESHFLKNMKTARCRAALPLLKTAKRVILLSG 484
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKAT 392
TPA+SRP EL+ Q++A+ P ++ H++G RYC K +G Y +SN EL L++ +
Sbjct: 485 TPAMSRPAELYTQIQAVRPALFPRFHDFGTRYCDAKQLPWGWDYSSSSNLTELKLLLEES 544
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL-EVVKGKIKACKSEEEVQS 451
+M+RRLK +VL+QLP K+R+ V + + R AL E+ KG KS+E+
Sbjct: 545 LMLRRLKSEVLSQLPAKQRKVVTVTTDGINSRTKAALNAAARELAKGYHN--KSQEKEAL 602
Query: 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKK 510
L F + +AEAKI A+++Y+ ++E G KFL+FAHH+ +LD+I + +K
Sbjct: 603 LVF---------FNHTAEAKIRAIMEYISDMLECGREKFLVFAHHKLVLDSITKELGEKS 653
Query: 511 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
+ IRIDG TP A RQ L FQ AVLS+ A +GLTL +A+ V+FAEL W PG
Sbjct: 654 ISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITAANMGLTLHSAALVVFAELFWNPG 713
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE-VSS 629
LIQAEDR HRIGQ S+V+++YL+A T DD +W ++++K+ L QV N E S
Sbjct: 714 VLIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLWPMIQAKMNVLEQVGLSESNISENAES 773
Query: 630 SQIRSSPAKQKTLDSFLKRCNNVDD 654
+ S +Q T+ +R + D+
Sbjct: 774 ASFHSRDRQQLTITEMFQRSFDEDE 798
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 162/462 (35%), Positives = 245/462 (53%)
Query: 7 WEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDF 66
W FS E+ L ++Q+A H S P +E L + T A A +
Sbjct: 172 WNFSLEDYQML----MEQVA--HLPSISLKPLEGMEGLNISASTCRPKDAAAMAALMRLC 225
Query: 67 SKEQVPKLSVK--FFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSS 124
Q P ++K L + + Y ++ F+++P +++ K R WTF L
Sbjct: 226 QGWQKPGATIKGKCVLVSRSRLEVDIGYQADVIGIFKQMPSKSYDMKTRKWTF---LLED 282
Query: 125 AEKVLSEISGY-NVEIENLHPLVQRAIASA-----SAAPDLREK-YDQIPAHIESKLLPF 177
K++++++ VE E L V ++ +S S AP E I + L+PF
Sbjct: 283 YGKLMADLNELPTVETEPLPHAVLQSFSSQFEKTQSQAPVPPEADLSHIDPQLTRSLMPF 342
Query: 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQ 237
QRDGV FA+ GR+LLAD+MGLGKT+QAI +A +R WP+L++ PSS+R WA ++
Sbjct: 343 QRDGVNFAVSREGRLLLADDMGLGKTVQAICIAAYYRSEWPLLVVAPSSVRFTWAEAFRR 402
Query: 238 WL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSS 296
WL ++ P I VV+ ++ R+ GL NIISYD++ K+ SS
Sbjct: 403 WLPSVKPDSINVVVK-------------GKDSLRS----GLINIISYDLLNKMDKQPPSS 445
Query: 297 NFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDV 356
F ++I DESHFLKN + R A LP++K A+ +LLSGTPA+SRP EL+ Q++A+ P +
Sbjct: 446 PFNVIIMDESHFLKNMKTARCRAALPLLKTAKRVILLSGTPAMSRPAELYTQIQAVRPAL 505
Query: 357 YKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQ 413
+ H++G RYC K +G Y +SN EL L++ ++M+RRLK +VL+QLP K+R+
Sbjct: 506 FPRFHDFGTRYCDAKQLPWGWDYSSSSNLTELKLLLEESLMLRRLKSEVLSQLPAKQRKV 565
Query: 414 VFLDVAEKDMRQIYALFREL-EVVKGKIKACKSEEEVQSLKF 454
V + + R AL E+ KG KS+E+ L F
Sbjct: 566 VTVTTDGINSRTKAALNAAARELAKGYHN--KSQEKEALLVF 605
Score = 54 (24.1 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 16/102 (15%), Positives = 44/102 (43%)
Query: 57 PAPKGSLGDFSKEQVPKLSVKFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWT 116
P P ++ +K+ L + H+ + Y L+ F+ IP ++ ++W
Sbjct: 116 PEPAANIP--AKKPAVYLRGRCVSHSENRFRVEVGYHADLILVFKSIPSKNYDPATKMWN 173
Query: 117 FPVPFLSSAEKVLSEISGY-NVEIENLHPLVQRAIASASAAP 157
F L + ++ +++ ++ ++ L + I++++ P
Sbjct: 174 FS---LEDYQMLMEQVAHLPSISLKPLEGMEGLNISASTCRP 212
>MGI|MGI:1859183 [details] [associations]
symbol:Smarcal1 "SWI/SNF related matrix associated, actin
dependent regulator of chromatin, subfamily a-like 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;IDA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 MGI:MGI:1859183 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 HOVERGEN:HBG054110 KO:K14440
OrthoDB:EOG4RFKRT OMA:FKQQNLS EMBL:AF088884 EMBL:AF209773
EMBL:AK042332 EMBL:AK043129 EMBL:AK077878 EMBL:AK083488
EMBL:AK154020 EMBL:AK169465 EMBL:BC029078 IPI:IPI00403353
IPI:IPI00553252 IPI:IPI00830468 IPI:IPI00918417 RefSeq:NP_061287.2
UniGene:Mm.274232 ProteinModelPortal:Q8BJL0 SMR:Q8BJL0
STRING:Q8BJL0 PhosphoSite:Q8BJL0 PaxDb:Q8BJL0 PRIDE:Q8BJL0
Ensembl:ENSMUST00000047615 Ensembl:ENSMUST00000136498 GeneID:54380
KEGG:mmu:54380 UCSC:uc007bko.2 UCSC:uc007bkq.2 UCSC:uc007bkr.2
UCSC:uc007bks.2 InParanoid:Q3TEQ9 NextBio:311200 Bgee:Q8BJL0
Genevestigator:Q8BJL0 GermOnline:ENSMUSG00000039354 Uniprot:Q8BJL0
Length = 910
Score = 698 (250.8 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 158/377 (41%), Positives = 228/377 (60%)
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
GL NI+S+D++ KL+ L + FK+VI DESHFLKN + R A +PI+K A+ +LLSG
Sbjct: 481 GLVNIVSFDLLCKLERQLKTP-FKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSG 539
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKAT 392
TPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+SN EL L++
Sbjct: 540 TPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRLPWGWDYSGSSNLGELKLLLEEA 599
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
+M+RRLK DVL+QLP K+R+ V ++ R K + A E
Sbjct: 600 IMLRRLKSDVLSQLPAKQRKMVVVNPGRISSR-----------AKAALDAAAKEMTKDKT 648
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKV 511
K +K + + +AEAKIP V++Y+ ++++G KFL+FAHH+ +LDA+ + +K V
Sbjct: 649 KQQQKEALLVFFNRTAEAKIPCVVEYILDLLDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
IRIDG TP A R+A FQ A+LS+ A +GLT + A V+FAEL W PG
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 768
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
LIQAEDR HRIGQ +SV+++YL+A T DD +W +++ K++ LG+ N E++ +
Sbjct: 769 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEAT 828
Query: 632 --IRSSPAKQKTL-DSF 645
+ P KQKT+ D F
Sbjct: 829 DYVHKDP-KQKTIYDLF 844
Score = 357 (130.7 bits), Expect = 2.5e-29, P = 2.5e-29
Identities = 128/450 (28%), Positives = 209/450 (46%)
Query: 23 QQIAQRHSKPFSDSPSYKVE---ALPQG-SRTLPLSVAPAPK--GSLG-DFSKEQVPKLS 75
+ + RH F+ + + + AL + R +S+ P + GS+G S P L+
Sbjct: 229 KSLPSRHYDSFTKTWDFSMSDYRALMKAVERLSTVSLKPLDEAGGSVGGQTSLPSAPSLT 288
Query: 76 V---KFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEI 132
K L + Y ++ F+++ +++ K R W+F L K+++
Sbjct: 289 FVTGKCMLISRVRFEVDIGYSEAVIGLFKQMESRSYDIKTRKWSF---LLEEHNKLIARS 345
Query: 133 SGYN-VEIENLHPLVQRAIASA--SAAPDLREKYDQ-----IPAHIESKLLPFQRDGVRF 184
V+++ L V A AS +P L+ + + A + S L+PFQR+GV F
Sbjct: 346 RELKQVQLDPLPKTVTLAFASQLEKTSPKLKADVPEADLSGVDAKLVSSLMPFQREGVSF 405
Query: 185 ALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPP 243
A+ GR+LLAD+MGLGKT+QAI +A +R WP+L++ PSS+R W +WL ++ P
Sbjct: 406 AISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSP 465
Query: 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIA 303
I VV++ G R T GL NI+S+D++ KL+ L + ++I
Sbjct: 466 ENINVVVT---GKGR--LTA------------GLVNIVSFDLLCKLERQLKTPFKVVIID 508
Query: 304 DESHF--LKNAQAKRTAATLPIIKKA---QYALLLSGTPALSRPIELFKQLEALYPDVYK 358
+ +K A+ + L + K+ +S L I K +P +
Sbjct: 509 ESHFLKNIKTARCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKP--TFFPQFHA 566
Query: 359 NVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLD 417
Y + K +G Y G+SN EL L++ +M+RRLK DVL+QLP K+R+ V ++
Sbjct: 567 FGLRYCD--AKRLPWGWDYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLPAKQRKMVVVN 624
Query: 418 VAEKDMRQIYALFREL-EVVKGKIKACKSE 446
R AL E+ K K K + E
Sbjct: 625 PGRISSRAKAALDAAAKEMTKDKTKQQQKE 654
Score = 55 (24.4 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 80 LHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEIS 133
+ T K Y+ L++ F+ +P +++ + W F + + K + +S
Sbjct: 208 IKTGDRFRVKIGYNQELIAVFKSLPSRHYDSFTKTWDFSMSDYRALMKAVERLS 261
>UNIPROTKB|E2RGL2 [details] [associations]
symbol:SMARCAL1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 KO:K14440 OMA:FKQQNLS
EMBL:AAEX03018122 RefSeq:XP_536062.2 UniGene:Cfa.5087
Ensembl:ENSCAFT00000022962 GeneID:478903 KEGG:cfa:478903
NextBio:20854171 Uniprot:E2RGL2
Length = 961
Score = 683 (245.5 bits), Expect = 9.5e-71, Sum P(2) = 9.5e-71
Identities = 158/376 (42%), Positives = 226/376 (60%)
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
GL NI+S+D++ KL+ L + FK+VI DESHFLKN + R A +P++K A+ +LLSG
Sbjct: 529 GLVNIVSFDLLSKLEKQLKTP-FKVVIIDESHFLKNIKTARCRAAMPLLKVAKRVILLSG 587
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKAT 392
TPA+SRP EL+ Q+ + P + H +G RYC K +G Y G+SN EL L++
Sbjct: 588 TPAMSRPAELYTQIIGVRPTFFPQFHAFGLRYCDAKRQPWGWDYSGSSNLGELKLLLEEA 647
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
VM+RRLK DVLAQLP K+R+ V + R AL + V K +
Sbjct: 648 VMLRRLKCDVLAQLPPKQRKMVIIAPGRISTRARAAL----DAV------AKEMTTMDKT 697
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKV 511
K +K + + +AEAKIP+V++Y+ ++E+G KFL+FAHH+ +L A+ + KK V
Sbjct: 698 KQQQKEALLLFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLSAVTRELEKKHV 757
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
I IDG T A R+ L +FQ + AVLS+ A +GLT T+A V+FAEL W PG
Sbjct: 758 PHIHIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLTFTSADLVVFAELFWNPGV 817
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
L+QAEDR HRIGQ SSV+++YL+A T DD +W +++ K++ LG+ N E++ +
Sbjct: 818 LLQAEDRVHRIGQSSSVSIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEAP 877
Query: 632 --IRSSPAKQKTLDSF 645
P +QK D F
Sbjct: 878 NYFYKDPKQQKIYDLF 893
Score = 339 (124.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 125/424 (29%), Positives = 197/424 (46%)
Query: 7 WEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDF 66
W FS + L + A Q++ +P + + E+ P T + AP SL F
Sbjct: 284 WNFSMTDYGALMKAA-QKLPTVTLQPL-EGAGHSRES-PSTGGTAQTCLPSAP--SLA-F 337
Query: 67 SKEQVPKLSVKFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAE 126
K Q +S F A Y LV+ F+++ +++ K R W F L
Sbjct: 338 VKGQCVLISRARF-------EADIGYSEALVALFKQMDSRSYDVKTRKWNF---LLEEHN 387
Query: 127 KVLSEISGY-NVEIENLHPLVQRAIASA--SAAPDLREKYDQ-----IPAHIESKLLPFQ 178
K++ + V+++ L + A AS +P L + + + + S LLPFQ
Sbjct: 388 KLIQRVRCLPQVQLDPLPKTLTLAFASQLEKTSPCLTQPIPEADLSGVDPKLVSSLLPFQ 447
Query: 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238
R GV FA+ GR+LLAD+MGLGKTIQAI +A ++ WP+L++ PSS+R W +W
Sbjct: 448 RAGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRW 507
Query: 239 L-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSN 297
L ++ P I VV++ G +R T GL NI+S+D++ KL+ L +
Sbjct: 508 LPSLSPERINVVVT---GKDR--LTA------------GLVNIVSFDLLSKLEKQLKTPF 550
Query: 298 FKIVIADESHF--LKNAQAKRTAATLPIIKKAQY--ALLLSGTPALSRPIELFKQLEALY 353
++I + +K A+ + L + K+ PA ++ +
Sbjct: 551 KVVIIDESHFLKNIKTARCRAAMPLLKVAKRVILLSGTPAMSRPA-ELYTQIIGVRPTFF 609
Query: 354 PDVYKNVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQ 412
P + Y + K +G Y G+SN EL L++ VM+RRLK DVLAQLP K+R+
Sbjct: 610 PQFHAFGLRYCD--AKRQPWGWDYSGSSNLGELKLLLEEAVMLRRLKCDVLAQLPPKQRK 667
Query: 413 QVFL 416
V +
Sbjct: 668 MVII 671
Score = 52 (23.4 bits), Expect = 9.5e-71, Sum P(2) = 9.5e-71
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 83 SGN-IAAKFTYDPVLVSAFRKIPKATWNAKERLWTF 117
SG+ K Y+ L++ F+ +P +++ + W F
Sbjct: 251 SGDRFQVKIGYNEELIAVFKSLPSRSYDPATKTWNF 286
Score = 41 (19.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 608 RSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
R K + L Q+ + ++ +I S + LD+ K +D ++ QQK
Sbjct: 652 RLKCDVLAQLPPKQRKMVIIAPGRI--STRARAALDAVAKEMTTMDKTKQQQK 702
>UNIPROTKB|F1MDP3 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9913 "Bos taurus" [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 IPI:IPI00711563 OMA:FKQQNLS
EMBL:DAAA02005900 Ensembl:ENSBTAT00000005013 Uniprot:F1MDP3
Length = 940
Score = 643 (231.4 bits), Expect = 1.2e-70, Sum P(3) = 1.2e-70
Identities = 150/387 (38%), Positives = 232/387 (59%)
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
DGL NI+S+D++ KL+ L FK+VI DESHFLKN + R A +P++K A+ +LLS
Sbjct: 518 DGLVNIVSFDLLSKLEKQLKPP-FKVVIIDESHFLKNIKTARCRAAMPLLKVAKRVILLS 576
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKA 391
GTPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+SN EL L++
Sbjct: 577 GTPAMSRPAELYTQILAVRPTFFPQFHAFGLRYCGAKRQPWGWDYSGSSNLGELKLLLEE 636
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQS 451
VM+RRLK DVL+QLP K+ + + A E + K + + Q
Sbjct: 637 AVMLRRLKGDVLSQLPAKQARWWWSPQARSTPGP------EPPWMPPPRMTTKDKTKQQ- 689
Query: 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKK 510
+K + + +AEAKIP++++Y+ ++E+G KFL+FAHH+ +LDAI + +K+
Sbjct: 690 ----QKEALILFFNRTAEAKIPSIIEYILDLLESGREKFLVFAHHKVVLDAITKELERKR 745
Query: 511 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
V IRIDG T A R+ + F ++ VLS+ A +GLT ++A V+F EL W PG
Sbjct: 746 VQHIRIDGSTSSADRETSASSFSCPRALRG-VLSITAANMGLTFSSADLVVFGELFWNPG 804
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-S 629
L+QAEDR HRIGQ+SSV+++YL+A T DD +W +++ K++ LG+ N E++ +
Sbjct: 805 VLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEA 864
Query: 630 SQIRSSPAKQKTLDSFLKRCNNVDDSE 656
+ S +KQ+ + + ++ D ++
Sbjct: 865 TDYFSKDSKQQKIYNLFQKSFEEDGND 891
Score = 347 (127.2 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 113/372 (30%), Positives = 181/372 (48%)
Query: 58 APKGSLGDFSKEQVPKL-SVKFF-----LHTSGNIAAKFTYDPVLVSAFRKIPKATWNAK 111
+P S G +K +P S+ F L + A +Y L++ F+++ ++ K
Sbjct: 307 SPSTSSGIIAKTGLPAAPSLAFVKGQCVLISRARFEADISYSEDLIALFKQMDSRKYDVK 366
Query: 112 ERLWTFPVPFLSSAEKVLSEISGY-NVEIENLHP---LVQRAIASASAAP--DLREK-YD 164
R W+F L K++ + G V+++ L L + + S +P D+ E
Sbjct: 367 TRKWSF---LLEEYSKLMERVRGLPQVQLDPLPKTLTLFRAQLQKTSLSPVADIPEADLS 423
Query: 165 QIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224
++ + + S LLPFQR GV FA+ GR+LLAD+MGLGKTIQAI +A +R WP+L++ P
Sbjct: 424 RVDSKLVSSLLPFQRAGVNFAIAQRGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVVVP 483
Query: 225 SSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISY 283
SS+R W +WL ++ P +I VV++ G +R T DGL NI+S+
Sbjct: 484 SSVRFTWEQAFCRWLPSLNPLDINVVVT---GKDR--LT------------DGLVNIVSF 526
Query: 284 DVVLKLQNILMSSNFKIVIADESHF--LKNAQAKRTAATLPIIKKAQY--ALLLSGTPAL 339
D++ KL+ L ++I + +K A+ + L + K+ PA
Sbjct: 527 DLLSKLEKQLKPPFKVVIIDESHFLKNIKTARCRAAMPLLKVAKRVILLSGTPAMSRPA- 585
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKATVMIRRL 398
++ +P + Y K +G Y G+SN EL L++ VM+RRL
Sbjct: 586 ELYTQILAVRPTFFPQFHAFGLRYCG--AKRQPWGWDYSGSSNLGELKLLLEEAVMLRRL 643
Query: 399 KKDVLAQLPVKR 410
K DVL+QLP K+
Sbjct: 644 KGDVLSQLPAKQ 655
Score = 58 (25.5 bits), Expect = 1.2e-70, Sum P(3) = 1.2e-70
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 89 KFTYDPVLVSAFRKIPKATWNAKERLWTFPV----PFLSSAEKV----LSEISGYNVEIE 140
K Y+ L++ F+ +P +++ + W F + P + +A+++ L + G +E
Sbjct: 247 KIGYNEALIAVFKSLPSRSYDPATKTWNFSMTDYGPLMKAAQRLPGITLQPLEGAEGHME 306
Query: 141 NLHPLVQRAIASASAAP 157
+ P I + + P
Sbjct: 307 S--PSTSSGIIAKTGLP 321
Score = 54 (24.1 bits), Expect = 1.2e-70, Sum P(3) = 1.2e-70
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 17 LEREALQQIAQRHSKPFSDSPSYKVEALPQG-SRTLPLSVAPAPKGSLGDFSKEQVPKLS 75
L R A + +A++H KP QG S+ LP P+ GS G F K+Q P S
Sbjct: 27 LARRAEKLLAEQHQKPAQSK---------QGPSQNLPRD--PSKSGSHGIFFKQQNPSSS 75
>UNIPROTKB|Q9TTA5 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9913 "Bos taurus" [GO:0000733 "DNA strand renaturation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
EMBL:AF173643 IPI:IPI00711563 RefSeq:NP_788839.1 UniGene:Bt.16022
ProteinModelPortal:Q9TTA5 STRING:Q9TTA5 PRIDE:Q9TTA5 GeneID:338072
KEGG:bta:338072 CTD:50485 HOGENOM:HOG000018734 HOVERGEN:HBG054110
InParanoid:Q9TTA5 KO:K14440 OrthoDB:EOG4RFKRT NextBio:20812522
Uniprot:Q9TTA5
Length = 941
Score = 635 (228.6 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 152/387 (39%), Positives = 234/387 (60%)
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
DGL NI+S+D++ KL+ L FK+VI DESHFLKN + AA +P++K A+ +LLS
Sbjct: 519 DGLVNIVSFDLLSKLEKQLKPP-FKVVIIDESHFLKNIKTAVCAA-MPLLKVAKRVILLS 576
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYC--KGGVFGI-YQGASNHEELHNLMKA 391
GTPA+SRP EL+ Q+ A+ P + H +G RYC K +G Y G+SN EL L++
Sbjct: 577 GTPAMSRPAELYTQILAVRPTFFPQFHAFGLRYCGAKRQPWGWDYSGSSNLGELKLLLEE 636
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQS 451
VM+RRLK DVL+QLP K+ + + A + + K K + ++E
Sbjct: 637 AVMLRRLKGDVLSQLPAKQPRWWWSPQARSMPGPEPPWMPPAKEMTTKDKTKQQQKEALI 696
Query: 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKK 510
L F N+ +AEAKIP++++Y+ ++E+G KFL+FAHH+ +LDAI + +K+
Sbjct: 697 LFF------NR----TAEAKIPSIIEYILDLLESGREKFLVFAHHKVVLDAITKELERKR 746
Query: 511 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
V IRIDG T A R+ + F ++ VLS+ A +GLT ++A V+F EL W PG
Sbjct: 747 VQHIRIDGSTSSADRETSASSFSCPRALRG-VLSITAANMGLTFSSADLVVFGELFWNPG 805
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-S 629
L+QAEDR HRIGQ+SSV+++YL+A T DD +W +++ K++ LG+ N E++ +
Sbjct: 806 VLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEA 865
Query: 630 SQIRSSPAKQKTLDSFLKRCNNVDDSE 656
+ S +KQ+ + + ++ D ++
Sbjct: 866 TDYFSKDSKQQKIYNLFQKSFEEDGND 892
Score = 336 (123.3 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 112/370 (30%), Positives = 179/370 (48%)
Query: 58 APKGSLGDFSKEQVPKL-SVKFF-----LHTSGNIAAKFTYDPVLVSAFRKIPKATWNAK 111
+P S G +K +P S+ F L + A +Y L++ F+++ ++ K
Sbjct: 308 SPSTSSGIIAKTGLPAAPSLAFVKGQCVLISRARFEADISYSEDLIALFKQMDSRKYDVK 367
Query: 112 ERLWTFPVPFLSSAEKVLSEISGY-NVEIENLHP---LVQRAIASASAAP--DLREK-YD 164
R W+F L K++ + G V+++ L L + + S +P D+ E
Sbjct: 368 TRKWSF---LLEEYSKLMERVRGPPQVQLDPLPKTLTLFRAQLQKTSLSPVADIPEADLS 424
Query: 165 QIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224
++ + + S LLPFQR GV FA+ GR+LLAD+MGLGKTIQAI +A +R WP+L++ P
Sbjct: 425 RVDSKLVSSLLPFQRAGVNFAIAQRGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVVVP 484
Query: 225 SSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISY 283
SS+R W +WL ++ P +I VV++ G +R T DGL NI+S+
Sbjct: 485 SSVRFTWEQAFCRWLPSLNPLDINVVVT---GKDR--LT------------DGLVNIVSF 527
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
D++ KL+ L ++I + A A L + K L + + +
Sbjct: 528 DLLSKLEKQLKPPFKVVIIDESHFLKNIKTAVCAAMPLLKVAKRVILLSGTPAMSRPAEL 587
Query: 344 --ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGASNHEELHNLMKATVMIRRLKK 400
++ +P + Y K +G Y G+SN EL L++ VM+RRLK
Sbjct: 588 YTQILAVRPTFFPQFHAFGLRYCG--AKRQPWGWDYSGSSNLGELKLLLEEAVMLRRLKG 645
Query: 401 DVLAQLPVKR 410
DVL+QLP K+
Sbjct: 646 DVLSQLPAKQ 655
Score = 58 (25.5 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 89 KFTYDPVLVSAFRKIPKATWNAKERLWTFPV----PFLSSAEKV----LSEISGYNVEIE 140
K Y+ L++ F+ +P +++ + W F + P + +A+++ L + G +E
Sbjct: 248 KIGYNEALIAVFKSLPSRSYDPATKTWNFSMTDYGPLMKAAQRLPGITLQPLEGAEGHME 307
Query: 141 NLHPLVQRAIASASAAP 157
+ P I + + P
Sbjct: 308 S--PSTSSGIIAKTGLP 322
Score = 54 (24.1 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 17 LEREALQQIAQRHSKPFSDSPSYKVEALPQG-SRTLPLSVAPAPKGSLGDFSKEQVPKLS 75
L R A + +A++H KP QG S+ LP P+ GS G F K+Q P S
Sbjct: 28 LARRAEKLLAEQHQKPAQSK---------QGPSQNLPRD--PSKSGSHGIFFKQQNPSSS 76
>UNIPROTKB|F8WCT9 [details] [associations]
symbol:ZRANB3 "Endonuclease ZRANB3" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012450 EMBL:AC016742 EMBL:AC017031
EMBL:AC020602 EMBL:AC064850 HGNC:HGNC:25249 ChiTaRS:ZRANB3
IPI:IPI00878993 ProteinModelPortal:F8WCT9 Ensembl:ENST00000403017
ArrayExpress:F8WCT9 Bgee:F8WCT9 Uniprot:F8WCT9
Length = 428
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 157/398 (39%), Positives = 238/398 (59%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
D +P + +KLLPFQ+DG+ FAL+ GR ++ADEMGLGKTIQAI + +++ WP+LI+
Sbjct: 27 DFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPLLIVV 86
Query: 224 PSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIIS 282
PSSLR W I++W+ + P EI V+ N++ +S++ + + G + +++
Sbjct: 87 PSSLRYPWTEEIEKWIPELSPEEINVI------QNKTDVRRMSTS---KVTVLG-YGLLT 136
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
D L + L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL RP
Sbjct: 137 ADAKT-LIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRP 195
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKGGV--FGIY-----QGASNHEELHNLMKATVMI 395
ELF Q+EAL+P + +Y RYC + FG +GASN ELH L+ + +MI
Sbjct: 196 EELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL-SDIMI 254
Query: 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455
RRLK +VL QLP K RQ++ D+ +++ F E E KI + ++ T
Sbjct: 255 RRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWE----KIMRTPNSGAME----T 306
Query: 456 EKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCI 514
LI +++ +A AK AV DY++ +++ KFL+FAHH ML A + ++ K I
Sbjct: 307 VMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYI 366
Query: 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGL 552
RIDG + R LV +FQ+ D + A+LS++A G L
Sbjct: 367 RIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQDL 404
>TAIR|locus:2142753 [details] [associations]
symbol:AT5G07810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00546687 RefSeq:NP_196398.2 UniGene:At.32666
ProteinModelPortal:F4K856 SMR:F4K856 PRIDE:F4K856
EnsemblPlants:AT5G07810.1 GeneID:830674 KEGG:ath:AT5G07810
OMA:HQINMLW Uniprot:F4K856
Length = 1190
Score = 419 (152.6 bits), Expect = 3.0e-65, Sum P(2) = 3.0e-65
Identities = 109/307 (35%), Positives = 174/307 (56%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223
+ +P + + LLPFQ DG+RF L+ GGR +ADEMGLGKT+QAIA+A CF +L++
Sbjct: 194 ETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVC 253
Query: 224 PSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIIS 282
P+ LR WA +++WL + PS++ +V G + + +P +IS
Sbjct: 254 PAVLRFTWAEELERWLPSCLPSDVHLVF---GHQDNPAY----------LPRWPKVVVIS 300
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAK----RTAATLPIIKKAQYALLLSGTPA 338
Y ++ L+ ++ + ++I DESH L+ ++ K L + +K ++ +LLSGTP+
Sbjct: 301 YKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTPS 360
Query: 339 LSRPIELFKQLEALYPDVY-KNVHEYGNRYCK-G---GVFG-IYQGASNHE---ELHNLM 389
+SRP ++F Q+ L+P + K+ +E+ YC+ G G+ G I+Q S EL+ L+
Sbjct: 361 VSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELNILL 420
Query: 390 KATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK-GKIKAC--KSE 446
TVMIRRLK+ +L QLP KRRQ V + + + D+ A+ E + K G I KS
Sbjct: 421 NQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGAIAEVTEKSH 480
Query: 447 EEVQSLK 453
E Q+ +
Sbjct: 481 EPDQNAR 487
Score = 325 (119.5 bits), Expect = 3.0e-65, Sum P(2) = 3.0e-65
Identities = 70/172 (40%), Positives = 98/172 (56%)
Query: 476 LDYLETVIE---AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEF 532
LDY I+ + K ++FAHH +LD I + K + +RIDG T P RQ V F
Sbjct: 541 LDYTPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSF 600
Query: 533 QEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
Q +VK A++ ++AGGVGL +AA V+F EL TP L+QAEDRAHR GQ S+VNVY
Sbjct: 601 QFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYI 660
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDGH---ENSLEVSSSQIRSSPAKQKT 641
A DT+D+ W + KL + DG + +E+ + I PA++ +
Sbjct: 661 FCAKDTMDESNWQNLNKKLHRISSTTDGKYDGKTEIEIGGASI-FKPAEESS 711
>WB|WBGene00015806 [details] [associations]
symbol:C16A3.1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0000003
GO:GO:0006357 GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 GeneTree:ENSGT00630000089754 EMBL:FO080367
HOGENOM:HOG000018734 KO:K14440 RefSeq:NP_498400.1
RefSeq:NP_498401.2 RefSeq:NP_741192.1 UniGene:Cel.8144
ProteinModelPortal:Q8MNV7 SMR:Q8MNV7 PaxDb:Q8MNV7 PRIDE:Q8MNV7
EnsemblMetazoa:C16A3.1c GeneID:175907 KEGG:cel:CELE_C16A3.1
UCSC:C16A3.1a CTD:175907 WormBase:C16A3.1a WormBase:C16A3.1b
WormBase:C16A3.1c InParanoid:Q8MNV7 OMA:IDGKTPS NextBio:890246
Uniprot:Q8MNV7
Length = 690
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 158/386 (40%), Positives = 225/386 (58%)
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
I+SY+ ++ +IL ++ +I DESH LK+ +A+RT + K A + +LLSGTPAL
Sbjct: 292 IMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPAL 351
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKG--GVFGIY-QGASNHEELHNLMKATVMIR 396
SRP ELF Q+ + ++ N HE+ RYC G G F +G +N EEL +M +MIR
Sbjct: 352 SRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIR 411
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456
RLK DVL LP KRR+ V++ D R +L+ KA E+V S++
Sbjct: 412 RLKADVLKDLPEKRREVVYVSGPTIDARM-----DDLQ------KARADYEKVNSMERKH 460
Query: 457 KNLINKIYTDSAEAKIPAVLDY-LETVIEAGC---KFLIFAHHQPMLDAIHQLFLKKKVH 512
++L+ + Y+ + K AV ++ LE K LIFAHHQ +LD I K+K+
Sbjct: 461 ESLL-EFYSLTGIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLG 519
Query: 513 CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDL 572
IRIDG TP R AL FQ D+++ AVLS+ A GVG+TLTAAS V+FAE+ + PG L
Sbjct: 520 SIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYL 579
Query: 573 IQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 632
+QAEDRAHR+GQ SV V YL+A T DD++W++V+ KL+ LGQV + +
Sbjct: 580 VQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQVSLSSDTFRTADKMHL 639
Query: 633 RSSPAKQKTLDSFLKRC--NNVDDSE 656
R + A Q + +LK+ +D+ E
Sbjct: 640 RFNDAAQPGIAEYLKKTPDTTIDEWE 665
Score = 489 (177.2 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 136/419 (32%), Positives = 218/419 (52%)
Query: 72 PKLSVKFFLHTSGNIAAKF-TYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLS 130
P + VK L I +F + ++ +++P ++ +R WT + +L
Sbjct: 98 PTIGVKLKLDIGDRIKIEFYPFHSAVIDLIKQVPSRNYDPAKRSWTVASSDHITISNILK 157
Query: 131 EISGYNVEIENLHPLVQRAIASAS----AAP-DLREKYDQIPAHIESKLLPFQRDGVRFA 185
+ VE+E PL Q I + AAP DL D P+ IE +L P+Q++GV FA
Sbjct: 158 NATAVKVELE---PLPQNIIGLTNFKPKAAPSDLNTVMD--PSLIE-RLFPYQKEGVIFA 211
Query: 186 LQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSE 245
L+ GRILLADEMGLGK++QA+ +A ++ WP+LI+ P+S++ W + + P
Sbjct: 212 LERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVKGAWKKQLNTFF--PIIH 269
Query: 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADE 305
+ ++ + S+ + +SNT I+SY+ ++ +IL ++ +I DE
Sbjct: 270 RIFIVDK---SSDPLPDVCTSNTVA---------IMSYEQMVLKHDILKKEKYRTIIFDE 317
Query: 306 SHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGN 365
SH LK+ +A+RT + K A + +LLSGTPALSRP ELF Q+ + ++ N HE+
Sbjct: 318 SHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAI 377
Query: 366 RYCKG--GVFGIY-QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVF-----LD 417
RYC G G F +G +N EEL +M +MIRRLK DVL LP KRR+ V+ +D
Sbjct: 378 RYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKRREVVYVSGPTID 437
Query: 418 VAEKDMRQIYALFRELEVVKGKIKACKSEEE----VQSLKFTEKNLINKIYTDSAEAKI 472
D+++ A + ++ ++ K ++ V++ E L N Y D+ K+
Sbjct: 438 ARMDDLQKARADYEKVNSMERKHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKV 496
>UNIPROTKB|Q8MNV7 [details] [associations]
symbol:C16A3.1 "Putative SMARCAL1-like protein"
species:6239 "Caenorhabditis elegans" [GO:0000733 "DNA strand
renaturation" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036310 "annealing helicase activity"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0000003 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 EMBL:FO080367 HOGENOM:HOG000018734
KO:K14440 RefSeq:NP_498400.1 RefSeq:NP_498401.2 RefSeq:NP_741192.1
UniGene:Cel.8144 ProteinModelPortal:Q8MNV7 SMR:Q8MNV7 PaxDb:Q8MNV7
PRIDE:Q8MNV7 EnsemblMetazoa:C16A3.1c GeneID:175907
KEGG:cel:CELE_C16A3.1 UCSC:C16A3.1a CTD:175907 WormBase:C16A3.1a
WormBase:C16A3.1b WormBase:C16A3.1c InParanoid:Q8MNV7 OMA:IDGKTPS
NextBio:890246 Uniprot:Q8MNV7
Length = 690
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 158/386 (40%), Positives = 225/386 (58%)
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
I+SY+ ++ +IL ++ +I DESH LK+ +A+RT + K A + +LLSGTPAL
Sbjct: 292 IMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPAL 351
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKG--GVFGIY-QGASNHEELHNLMKATVMIR 396
SRP ELF Q+ + ++ N HE+ RYC G G F +G +N EEL +M +MIR
Sbjct: 352 SRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIR 411
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456
RLK DVL LP KRR+ V++ D R +L+ KA E+V S++
Sbjct: 412 RLKADVLKDLPEKRREVVYVSGPTIDARM-----DDLQ------KARADYEKVNSMERKH 460
Query: 457 KNLINKIYTDSAEAKIPAVLDY-LETVIEAGC---KFLIFAHHQPMLDAIHQLFLKKKVH 512
++L+ + Y+ + K AV ++ LE K LIFAHHQ +LD I K+K+
Sbjct: 461 ESLL-EFYSLTGIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLG 519
Query: 513 CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDL 572
IRIDG TP R AL FQ D+++ AVLS+ A GVG+TLTAAS V+FAE+ + PG L
Sbjct: 520 SIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYL 579
Query: 573 IQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 632
+QAEDRAHR+GQ SV V YL+A T DD++W++V+ KL+ LGQV + +
Sbjct: 580 VQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQVSLSSDTFRTADKMHL 639
Query: 633 RSSPAKQKTLDSFLKRC--NNVDDSE 656
R + A Q + +LK+ +D+ E
Sbjct: 640 RFNDAAQPGIAEYLKKTPDTTIDEWE 665
Score = 489 (177.2 bits), Expect = 2.7e-46, P = 2.7e-46
Identities = 136/419 (32%), Positives = 218/419 (52%)
Query: 72 PKLSVKFFLHTSGNIAAKF-TYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLS 130
P + VK L I +F + ++ +++P ++ +R WT + +L
Sbjct: 98 PTIGVKLKLDIGDRIKIEFYPFHSAVIDLIKQVPSRNYDPAKRSWTVASSDHITISNILK 157
Query: 131 EISGYNVEIENLHPLVQRAIASAS----AAP-DLREKYDQIPAHIESKLLPFQRDGVRFA 185
+ VE+E PL Q I + AAP DL D P+ IE +L P+Q++GV FA
Sbjct: 158 NATAVKVELE---PLPQNIIGLTNFKPKAAPSDLNTVMD--PSLIE-RLFPYQKEGVIFA 211
Query: 186 LQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSE 245
L+ GRILLADEMGLGK++QA+ +A ++ WP+LI+ P+S++ W + + P
Sbjct: 212 LERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVKGAWKKQLNTFF--PIIH 269
Query: 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADE 305
+ ++ + S+ + +SNT I+SY+ ++ +IL ++ +I DE
Sbjct: 270 RIFIVDK---SSDPLPDVCTSNTVA---------IMSYEQMVLKHDILKKEKYRTIIFDE 317
Query: 306 SHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGN 365
SH LK+ +A+RT + K A + +LLSGTPALSRP ELF Q+ + ++ N HE+
Sbjct: 318 SHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAI 377
Query: 366 RYCKG--GVFGIY-QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVF-----LD 417
RYC G G F +G +N EEL +M +MIRRLK DVL LP KRR+ V+ +D
Sbjct: 378 RYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKRREVVYVSGPTID 437
Query: 418 VAEKDMRQIYALFRELEVVKGKIKACKSEEE----VQSLKFTEKNLINKIYTDSAEAKI 472
D+++ A + ++ ++ K ++ V++ E L N Y D+ K+
Sbjct: 438 ARMDDLQKARADYEKVNSMERKHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKV 496
>UNIPROTKB|K7DXW5 [details] [associations]
symbol:Bt.28179 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 InterPro:IPR003615
SMART:SM00507 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00630000089754 EMBL:DAAA02005001 EMBL:DAAA02005002
Ensembl:ENSBTAT00000038374 Uniprot:K7DXW5
Length = 1001
Score = 620 (223.3 bits), Expect = 7.1e-60, P = 7.1e-60
Identities = 138/339 (40%), Positives = 207/339 (61%)
Query: 289 LQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQ 348
L + L + NFK+VI DESH++K+ A R+ LPI++KA+ A+LL+GTPAL RP E +
Sbjct: 82 LIDALNNQNFKVVIVDESHYMKSRSATRSRILLPIVQKAKRAILLTGTPALGRPEETIQ- 140
Query: 349 LEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPV 408
L+ V ++G + + + +GASN ELH L+ + +MIRRLK +VL QLP
Sbjct: 141 ---LHSHCVGPVDQFGIYFGRRSQWDC-RGASNLNELHQLL-SDIMIRRLKTEVLTQLPP 195
Query: 409 KRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSA 468
K RQ++ D+ +++ + F E E K+ + T LI +++ +A
Sbjct: 196 KIRQRIPFDLPSAAAKELNSSFEEWE----KLM----RDPYSGATETVMGLITRMFKQTA 247
Query: 469 EAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
AK AV DY++ +++ KFL+FAHH ML A + ++ K IRIDG P + R
Sbjct: 248 IAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIH 307
Query: 528 LVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS 587
LV +FQ+ + + A+LS++A G GLT TAA+ V+FAEL W PG + QAEDRAHRIGQ SS
Sbjct: 308 LVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSS 367
Query: 588 VNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626
VN++YL+AN T+D ++W ++ K + G L+G + L+
Sbjct: 368 VNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKLQ 406
Score = 369 (135.0 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 89/238 (37%), Positives = 143/238 (60%)
Query: 198 MGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL-NIPPSEIVVVLSQLGGS 256
MGLGKT+QAI +A +++ WP+LI+ PSSLR W I++W+ + P EI V+
Sbjct: 1 MGLGKTVQAIGIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI------Q 54
Query: 257 NRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
N++ +S++ + + G + +++ D L + L + NFK+VI DESH++K+ A R
Sbjct: 55 NKTDVGRISTS---KVTVLG-YGLLTTDAET-LIDALNNQNFKVVIVDESHYMKSRSATR 109
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ LPI++KA+ A+LL+GTPAL RP E + L+ V ++G + + +
Sbjct: 110 SRILLPIVQKAKRAILLTGTPALGRPEETIQ----LHSHCVGPVDQFGIYFGRRSQWDC- 164
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE 434
+GASN ELH L+ + +MIRRLK +VL QLP K RQ++ D+ +++ + F E E
Sbjct: 165 RGASNLNELHQLL-SDIMIRRLKTEVLTQLPPKIRQRIPFDLPSAAAKELNSSFEEWE 221
>FB|FBgn0031655 [details] [associations]
symbol:Marcal1 "Marcal1" species:7227 "Drosophila
melanogaster" [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005705 "polytene chromosome interband" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006357 GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 GO:GO:0005705 GeneTree:ENSGT00630000089754 KO:K14440
OMA:IDGKTPS EMBL:BT011033 RefSeq:NP_608883.1 UniGene:Dm.18320
ProteinModelPortal:Q9VMX6 SMR:Q9VMX6 PaxDb:Q9VMX6 PRIDE:Q9VMX6
EnsemblMetazoa:FBtr0078992 GeneID:33709 KEGG:dme:Dmel_CG3753
UCSC:CG3753-RA CTD:33709 FlyBase:FBgn0031655 InParanoid:Q9VMX6
OrthoDB:EOG47D7XT PhylomeDB:Q9VMX6 GenomeRNAi:33709 NextBio:784900
Bgee:Q9VMX6 Uniprot:Q9VMX6
Length = 755
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 145/341 (42%), Positives = 200/341 (58%)
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
I SY+++ + ++ LM F +I DESH LKN++AK T + +A+ +LLSGTPAL
Sbjct: 337 ITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPAL 396
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKG--GVFGI-YQGASNHEELHNLMKATVMIR 396
SRP+ELF QL+ + + N E+ RYC G FG G SN EEL ++ M+R
Sbjct: 397 SRPLELFTQLQMI-DGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHLKYMLR 455
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456
R K +VL QL K R+ V LD A ++ E K + A E + + TE
Sbjct: 456 RTKVEVLPQLAEKNRETVVLDPA--------LVWTNAET-KETLDAFNKELKTAKGRATE 506
Query: 457 KNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRI 516
+ L+ + Y +AE K AV YL+T+++ KF+IFAHH+ M+DAI KVH IRI
Sbjct: 507 EILL-RFYARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRI 565
Query: 517 DGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAE 576
DG T R V FQ+K K A+LS+KA G+TLTAA ++FAEL W P L QAE
Sbjct: 566 DGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAE 625
Query: 577 DRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV 617
RAHRIGQ V YL+A++T DDI+W+++++K E L +V
Sbjct: 626 SRAHRIGQTKPVICRYLIAHNTADDIIWNMLKNKQEVLSKV 666
Score = 432 (157.1 bits), Expect = 5.0e-38, P = 5.0e-38
Identities = 124/376 (32%), Positives = 194/376 (51%)
Query: 74 LSVKFFLHTSGNIAAKFT-YDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEI 132
++ +L ++ AA+ + Y LV+ F+ +P ++ + R+W+F + S + +++
Sbjct: 148 ITCNLYLISTHRFAAQTSGYHEQLVTVFKNMPTKCYDGQTRIWSFDLSDYQSLKTHAADL 207
Query: 133 SGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQHGGRI 192
Y V + + V P+ R I + +L+PFQ+DGV FA+ GRI
Sbjct: 208 KPY-VHMNGIPKKVLDLCGQPPVVPE-RSVLASIEPKLADQLMPFQQDGVCFAIAQKGRI 265
Query: 193 LLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQ 252
++ DEMGLGKT QA+AVA F+D WP+L+ T +S R WA I L P V VL+
Sbjct: 266 MICDEMGLGKTYQALAVADYFKDDWPLLVCTTASTRDSWAKHIMDLLPKVPIHYVQVLN- 324
Query: 253 LGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNA 312
+N+ + K I SY+++ + ++ LM F +I DESH LKN+
Sbjct: 325 ---NNQ----LYVGEAK--------VLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNS 369
Query: 313 QAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEAL---YPDVYKNVHEYGNRYCK 369
+AK T + +A+ +LLSGTPALSRP+ELF QL+ + + + + Y + K
Sbjct: 370 KAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMIDGKFMNFMEFTTRYCDG--K 427
Query: 370 GGVFGI-YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVA----EKDMR 424
FG G SN EEL ++ M+RR K +VL QL K R+ V LD A + +
Sbjct: 428 QSTFGWDANGQSNLEELKVILHLKYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETK 487
Query: 425 QIYALF-RELEVVKGK 439
+ F +EL+ KG+
Sbjct: 488 ETLDAFNKELKTAKGR 503
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 260 (96.6 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 90/333 (27%), Positives = 164/333 (49%)
Query: 118 PVPFLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAP-----DLREKYDQIPAHIES 172
P P + E E++ N + ++ + A A+ SA P + ++P ++
Sbjct: 476 PEPCSENVEGTFHEVAEDN-DKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKH 534
Query: 173 KLLPFQRDGVRFAL-QHGGRI--LLADEMGLGKTIQAIAVAT---CFRDVW-PVLILTPS 225
L +Q G+ + + + ++ +LADEMGLGKTI IA+ C + +W P LI+ P+
Sbjct: 535 SLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPT 594
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN--IPLDGLFNIIS- 282
S+ L+W +W P +I L+ G + KR + L+ I+
Sbjct: 595 SVMLNWETEFLKWC--PAFKI---LTYFGSAKER-------KLKRQGWMKLNSFHVCITT 642
Query: 283 YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRP 342
Y +V++ + +K +I DE+H +KN +++R L K + +LL+GTP +
Sbjct: 643 YRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRR--ILLTGTPLQNDL 700
Query: 343 IELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS--NHE---ELHNLMKATVMIRR 397
+EL+ + L P V+++ E+ + +C + G+ +G N E LHN+++ ++RR
Sbjct: 701 MELWSLMHFLMPHVFQSHQEFKDWFCNP-IAGMVEGQEKINKEVIDRLHNVLRP-FLLRR 758
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF 430
LK+DV QLP K +F ++++ R +Y F
Sbjct: 759 LKRDVEKQLPSKHEHVIFCRLSKRQ-RNLYEDF 790
Score = 225 (84.3 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 50/141 (35%), Positives = 74/141 (52%)
Query: 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545
G + LIF MLD + +R+DG TPP RQ L+ F + +LS
Sbjct: 1091 GHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILST 1150
Query: 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 605
++GGVG+ L A TVIF + W P QA+DR HRIGQ V++Y L++ T+++ +
Sbjct: 1151 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1210
Query: 606 VVRSK--LENLGQVLDGHENS 624
K L+NL + +G N+
Sbjct: 1211 KANQKRVLDNL-VIQNGEYNT 1230
Score = 44 (20.5 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 347 KQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS--NHEELHNLMKATVMIRRLKKDVLA 404
++LEAL +V V E RY G V N + L ++ + T ++ +D LA
Sbjct: 242 EELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLA 301
Query: 405 QL 406
+
Sbjct: 302 SV 303
Score = 41 (19.5 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 140 ENLHPLVQRAIASASAAPDLREKYD 164
E + P + + S +P+L E YD
Sbjct: 190 EQIPPEINSSAGLESGSPELDEDYD 214
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 419 (152.6 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 131/493 (26%), Positives = 239/493 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIES-KLLPFQRDGVRF--ALQHGGRI--LLADEMGLG 201
+ +A A + DL +D+ P +IE+ ++ +Q G+ + +LQH +I +LADEMGLG
Sbjct: 105 EEMVADAIKSDDL-VIFDKSPFYIENGEMRDYQVRGLNWLASLQHN-KINGILADEMGLG 162
Query: 202 KTIQAIAVATCFRD----VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN 257
KT+Q I++ + P L++ P S +WA ++W P VV++ N
Sbjct: 163 KTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWC--PSINAVVLIGDEAARN 220
Query: 258 RSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAK 315
+ R++ L F++ +Y+++LK++ L N++ +I DE+H +KN ++K
Sbjct: 221 Q---------VLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSK 271
Query: 316 RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI 375
+ + ++ LL++GTP + EL+ L L PD++ + ++ + + + G
Sbjct: 272 LSETVREL--NSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSG- 328
Query: 376 YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELE 434
+ LH +++ ++RR+K DV L K+ +V++ +++ L ++++
Sbjct: 329 --NTDLVQRLHKVLQP-FLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDID 385
Query: 435 VVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY-----------LETVI 483
++ G K K+ + L K + + D AE P D L+ ++
Sbjct: 386 IINGAGKVEKARL-MNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKLL 444
Query: 484 ----EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539
E G + LIF+ MLD + + R+DG TP R + + D K
Sbjct: 445 MKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKK 504
Query: 540 AA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598
+L+ +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ L+ +T
Sbjct: 505 FIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENT 564
Query: 599 VDDIVWDVVRSKL 611
VD+ + + +KL
Sbjct: 565 VDERIIEKAEAKL 577
Score = 43 (20.2 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 1 MEVDDEWEFSAEELDFLER-EALQQIAQRHSKPFSDSPSYKVEALP 45
MEVDDE E S++ D +R E L Q + S S + P
Sbjct: 31 MEVDDEPE-SSDAADSFKRFERLLQKTENFSHCLSSGDAKLATGAP 75
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 417 (151.9 bits), Expect = 7.0e-36, P = 7.0e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 152 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 211
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 212 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW--VPTLRSVCLIGDK--EQR 267
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 268 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 320
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 321 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 378
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 379 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 435 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 493
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF 553
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 614 EERIVERAEMKL 625
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 417 (151.9 bits), Expect = 7.0e-36, P = 7.0e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 152 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 211
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 212 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW--VPTLRSVCLIGDK--EQR 267
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 268 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 320
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 321 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 378
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 379 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 435 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 493
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF 553
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 614 EERIVERAEMKL 625
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 417 (151.9 bits), Expect = 7.0e-36, P = 7.0e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 152 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 211
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 212 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW--VPTLRSVCLIGDK--EQR 267
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 268 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 320
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 321 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 378
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 379 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 435 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 493
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF 553
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 614 EERIVERAEMKL 625
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 416 (151.5 bits), Expect = 9.1e-36, P = 9.1e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 151 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 210
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 211 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKW--VPTLRSVCLIGDK--EQR 266
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 267 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 319
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 320 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 377
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 378 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 433
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 434 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 492
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 493 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 552
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 553 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 612
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 613 EERIVERAEMKL 624
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 416 (151.5 bits), Expect = 9.1e-36, P = 9.1e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 151 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 210
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 211 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW--VPTLRSVCLIGDK--EQR 266
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 267 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 319
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 320 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 377
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 378 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 433
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 434 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 492
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 493 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 552
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 553 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 612
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 613 EERIVERAEMKL 624
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 416 (151.5 bits), Expect = 9.1e-36, P = 9.1e-36
Identities = 127/492 (25%), Positives = 241/492 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S A ++ +++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 152 EELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 211
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W + ++W +P V ++ R
Sbjct: 212 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRW--VPTLRSVCLIGDK--EQR 267
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 268 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 320
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 321 SEIVREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 378
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 379 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 434
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-YLE 480
+ K K + L K + D AE P VLD L
Sbjct: 435 LNSAGKMDKMRL-LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLP 493
Query: 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540
+ E G + LIF+ +LD + + + R+DG TP RQ + + E + K
Sbjct: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 553
Query: 541 A-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 600 DDIVWDVVRSKL 611
++ + + KL
Sbjct: 614 EERIVERAEMKL 625
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 257 (95.5 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 54/138 (39%), Positives = 81/138 (58%)
Query: 490 LIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546
LIF + MLD + L+K V +R+DG T P RQ++V +F E + +L+ K
Sbjct: 1690 LIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTK 1749
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
GG+GL LT A TVIF E W P + +QA DRAHR+GQ VNVY L+ DT+++ + +
Sbjct: 1750 VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGL 1809
Query: 607 VRSKLENLGQVLDGHENS 624
+ K+ N+ + +N+
Sbjct: 1810 QKFKM-NIASTIVNQQNA 1826
Score = 219 (82.2 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 89/333 (26%), Positives = 153/333 (45%)
Query: 157 PDLREKYDQIPAHIESKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATC- 212
P + +D +P I++ L +Q++GV F ++ +L D+MGLGKT+Q I + +
Sbjct: 1286 PTKIKSFD-LPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSD 1344
Query: 213 -------FRDVW-------PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
F++ P L++ P SL HW I Q+ P +++V
Sbjct: 1345 HHIREENFKETGSAEYRKLPSLVICPPSLIGHWEQEINQYA--PFMKVLVY--------- 1393
Query: 259 SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTA 318
+G + + IP D + SYDV L ++ + DE H +KNA +K +
Sbjct: 1394 AGSPSIRIPLRGQIP-DADVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSK 1452
Query: 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVY---KNVHEY------GNRYCK 369
+ + KA++ L+LSGTP + +EL+ + L P K HE +R K
Sbjct: 1453 SVKRV--KAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSK 1510
Query: 370 GGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYAL 429
GA E LH + M+RRLK+DVL+ LP K Q + ++++ +++Y
Sbjct: 1511 TSSKEQEAGALAMESLHKQV-LPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQ-KKLYKD 1568
Query: 430 FREL--EVVKGKIKACKSEEEV---QSLKFTEK 457
F + E +K ++ + E + Q+L++ K
Sbjct: 1569 FAKTQKETIKTDVQGSEKEGKTHVFQALQYMRK 1601
Score = 45 (20.9 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 420 EKDMRQIYALFRELE---VVKGKIKA----CKSEEEVQSLKFTEKNLINKIYTDS 467
EKD Q++ E+E +VK + K E++ + K T KNL N I DS
Sbjct: 85 EKDAEQVFVK-EEIETDPIVKKEFPEDEIIIKKEQDEELQKLT-KNLSNLINFDS 137
Score = 41 (19.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 409 KRRQQVFL-DVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLIN 461
K +QVF+ + E D + F E E++ IK + +EE+Q L NLIN
Sbjct: 86 KDAEQVFVKEEIETDPI-VKKEFPEDEII---IKK-EQDEELQKLTKNLSNLIN 134
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 412 (150.1 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 129/503 (25%), Positives = 241/503 (47%)
Query: 162 KYDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV-- 216
++ + PA++ +L P+Q GV + + H +I +LADEMGLGKT+Q I+ R +
Sbjct: 184 QFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEK 243
Query: 217 --WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P L++ P S +W I +W P +L G ++ K+ +
Sbjct: 244 IPGPFLVIAPKSTLNNWLREINRWT---PDVNAFILQ---GDKEERAELIQ---KKLLGC 294
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
D I SY+++++ ++ L N++ +I DE+H +KN ++ + + + LL++
Sbjct: 295 DFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNR--LLIT 352
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L L PD++ + ++ + + ++LH +++ +
Sbjct: 353 GTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIV--KQLHTVLQP-FL 409
Query: 395 IRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF-RELEVVKGKIKACKSEEEVQSLK 453
+RR+K DV L K+ +++ ++ + + ++L+ V G + +S+ + ++
Sbjct: 410 LRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIM 469
Query: 454 FTEKNLINKIYT-DSAEAKIP--------------AVLD-YLETVIEAGCKFLIFAHHQP 497
+ N Y D AE P VLD L+ + E G + LIF+
Sbjct: 470 MQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSR 529
Query: 498 MLDAIHQL-FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLT 555
+LD + + + +C RIDG T R + ++ D K +L+ +AGG+G+ LT
Sbjct: 530 LLDILEDYCYFRNYEYC-RIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLT 588
Query: 556 AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLG 615
+A V+ + W P +QA DRAHRIGQ V V+ L+ +++V++ + + KL L
Sbjct: 589 SADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLR-LD 647
Query: 616 Q-VLDGHENSLEVSSSQIRSSPA 637
Q V+ + SL+ ++ S A
Sbjct: 648 QLVIQQNRTSLKKKENKADSKDA 670
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 407 (148.3 bits), Expect = 8.9e-35, P = 8.9e-35
Identities = 138/513 (26%), Positives = 254/513 (49%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ +A SA ++ ++D PA+I+S ++ +Q G+ + + ++G +LADEMGLGK
Sbjct: 101 EELLAEDSATKEIF-RFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGK 159
Query: 203 TIQAIAVATCFR----DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ + P +++ P S +W ++W PS V L +G +
Sbjct: 160 TLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWC---PSLRAVCL--IGDQDT 214
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
T + R++ + G +++ SY++ ++ +++ N++ ++ DE+H +KN ++K
Sbjct: 215 RN-TFI-----RDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSK- 267
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ L K A LL++GTP + EL+ L L PDV+ + ++ + G
Sbjct: 268 LSEILREFKTAN-RLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLG-- 324
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVA--EKDMRQIYALFRELE 434
+ LH ++K ++RRLK +V +L K+ ++F+ ++ ++D L ++++
Sbjct: 325 -DDALITRLHAVLKP-FLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDW-YTKVLLKDID 381
Query: 435 VVKG--KIKACKSEEEVQSL-KFTEKNLI------NKIYTDSAE-----AKIPAVLD-YL 479
VV G K++ + + + L K T + YT K+ A+LD L
Sbjct: 382 VVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKM-AILDKLL 440
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539
+ E G + LIF+ MLD + + + R+DG TP R + EF + K
Sbjct: 441 PKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAK 500
Query: 540 AA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ L+ T
Sbjct: 501 FLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITEST 560
Query: 599 VDDIVWD--VVRSKLENL----GQVLDGHENSL 625
V++ + + V+ +L+ + G+++D N L
Sbjct: 561 VEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQL 593
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 413 (150.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 127/494 (25%), Positives = 243/494 (49%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ + +S ++ ++++ P++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 137 EELLTESSKTTNVCTRFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 196
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W ++W +P V ++ R
Sbjct: 197 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRW--VPTLRAVCLIGDK--DQR 252
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ L G +++ SY++++K +++ N++ ++ DE+H +KN ++K
Sbjct: 253 AAFV-------RDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 305
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 306 SEIVREF--KTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ 363
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K DV LP K+ ++++ +++ L +++++
Sbjct: 364 KLV---ERLHMVLRP-FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI 419
Query: 436 VK--GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP--------------AVLD-Y 478
+ GK+ + + L+ K + D AE P VLD
Sbjct: 420 LNSAGKLDKMRLLNILMQLR---KCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKL 476
Query: 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDV 538
L + E G + LIF+ +LD + + + R+DG TP RQA + + E
Sbjct: 477 LPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSS 536
Query: 539 KAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597
K +LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++
Sbjct: 537 KFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDN 596
Query: 598 TVDDIVWDVVRSKL 611
TV++ + + KL
Sbjct: 597 TVEERIVERAEMKL 610
Score = 37 (18.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 52 PLSVAPAPKGSLGDFSKEQVP 72
PL PAP G+ + E P
Sbjct: 13 PLDEPPAPPGASSGEAAETAP 33
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 400 (145.9 bits), Expect = 4.9e-34, P = 4.9e-34
Identities = 131/498 (26%), Positives = 247/498 (49%)
Query: 162 KYDQIPAHIESKLL-PFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
++++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 94 RFEESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 153
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN-RSGFTIVSSNTKRNI 272
++ P ++L P S +W ++W+ PS V L +G + R+ F R++
Sbjct: 154 NIPGPHMVLVPKSTLHNWMNEFKRWV---PSLRAVCL--IGDKDARAAFI-------RDV 201
Query: 273 PLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYA 330
+ G +++ SY++V+K +++ N++ ++ DE+H +KN ++K + K
Sbjct: 202 MMPGEWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNR 259
Query: 331 LLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMK 390
LLL+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 260 LLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLK 316
Query: 391 ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEVVKGKIKACKSEEEV 449
++RR+K +V LP K+ +++L +++ L ++++++ K K +
Sbjct: 317 P-FLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRL-L 374
Query: 450 QSLKFTEKNLINKIYTDSAEAKIP--------------AVLDYLETVI-EAGCKFLIFAH 494
L K + D AE P VLD L + E G + L+F+
Sbjct: 375 NILMQLRKCCNHPYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQ 434
Query: 495 HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLT 553
+LD + + + R+DG TP R+ + F + K +LS +AGG+G+
Sbjct: 435 MTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGIN 494
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKL 611
L A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++ +L
Sbjct: 495 LATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 554
Query: 612 ENL----GQVLDGHENSL 625
+++ G+++D N L
Sbjct: 555 DSIVIQQGRLIDQQSNKL 572
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 397 (144.8 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 124/491 (25%), Positives = 244/491 (49%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIESKLL-PFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ ++ + A ++ ++++ P++I++ L +Q G+ + + ++G +LADEMGLGK
Sbjct: 115 EELLSESRKADNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLYENGINGILADEMGLGK 174
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q IA+ +R++ P ++L P S +W ++W +P + V ++ R
Sbjct: 175 TLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRW--VPTLKAVCLIGNK--DER 230
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R++ + G +++ SY++V++ +++ N++ ++ DE+H +KN ++K
Sbjct: 231 AAFI-------RDVMMPGEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKL 283
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + + G
Sbjct: 284 SEIAREF--KTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWF-DTNCLGDQ 340
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
+ E LH +++ ++RR+K +V LP K+ +++L +++ L +++++
Sbjct: 341 KLV---ERLHAVLRP-FLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDI 396
Query: 436 VK--GKIKACKSEEEVQSLK--FTEKNLINKI-----YTDSAE-----AKIPAVLDYLET 481
+ GK+ + + L+ L + YT K+ A+ L
Sbjct: 397 LNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVINSGKMVALDKLLPK 456
Query: 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541
V E G + LIF+ +LD + + + R+DG TP +R+ + F + K
Sbjct: 457 VQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFI 516
Query: 542 -VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ L+ ++TV+
Sbjct: 517 FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVE 576
Query: 601 DIVWDVVRSKL 611
+ + + KL
Sbjct: 577 ERIVERAEMKL 587
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 242 (90.2 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 55/148 (37%), Positives = 81/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+V+ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 467 ESVV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 525
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 526 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 585
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 586 GTLEEKIMGLQKFKM-NIANTVISQENS 612
Score = 205 (77.2 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 82 ENY-KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 140
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 141 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---REYLNPLHYTGPPTER--I 195
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 196 RLQHQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 250
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 251 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 308
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 309 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 363
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 364 --AKSRAK-CDVDETVSSATLSEETEKPKL---KATGHVFQALQYL 403
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 394 (143.8 bits), Expect = 2.8e-33, P = 2.8e-33
Identities = 131/501 (26%), Positives = 247/501 (49%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 182 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 241
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
++ P ++L P S +W ++W +P ++ + R+ F R+
Sbjct: 242 NIPGPHMVLVPKSTLYNWMNEFKRW--VPSLRVICFVGDKDA--RAAFI-------RDEM 290
Query: 274 LDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331
+ G +++ SY++V+K +++ +++ ++ DE+H +KN ++K + K+ L
Sbjct: 291 MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF--KSTNRL 348
Query: 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKA 391
LL+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 349 LLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLKP 405
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKSEEEV 449
++RR+K DV LP K+ +V+L +++ Y L ++++V+ K K +
Sbjct: 406 -FLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDIDVLNSAGKMDKMR--L 462
Query: 450 QSLKFTEKNLINKIYT-DSAEAKIP--------------AVLDYLETVI-EAGCKFLIFA 493
++ + N Y D AE P VLD L + E G + LIF+
Sbjct: 463 LNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFS 522
Query: 494 HHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA--LVTEFQEKDDVKAA-VLSMKAGGV 550
+LD + + + R+DG TP R+ + F + K +LS +AGG+
Sbjct: 523 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGL 582
Query: 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVR 608
G+ L +A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++
Sbjct: 583 GINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIK 642
Query: 609 SKLENL----GQVLDGHENSL 625
+L+++ G+++D N L
Sbjct: 643 LRLDSIVIQQGRLIDQQSNKL 663
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 392 (143.0 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 140/499 (28%), Positives = 239/499 (47%)
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGV-----RFALQHGGRILLADEMGLGK 202
RA A+ DLR+ + H+ S +Q +GV RF Q+G +L DEMGLGK
Sbjct: 25 RAEAARVQEQDLRQ-WGLTGIHLRS----YQLEGVNWLAQRFHCQNG--CILGDEMGLGK 77
Query: 203 TIQAIAV----ATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T Q IA+ A D P LIL P S+ +W +Q++ P V + G
Sbjct: 78 TCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFA---PGLSCVTYA---GDKE 131
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ ++++ + F+++ +Y++ LK + L S + +++ DE+H LKN Q+
Sbjct: 132 ERACL-----QQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKN-QSSL 185
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVY--KNVHEYGNRYCKGGVFG 374
TL ++LLL+GTP + EL+ L + PD++ + V ++ RY
Sbjct: 186 LHKTLSEFSVV-FSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQD----- 239
Query: 375 IYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA-LFREL 433
I + + + ELH L++ ++RR+K +V +LP K ++ ++ + A L ++L
Sbjct: 240 IEKESESASELHKLLQP-FLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDL 298
Query: 434 EVVKGKI-KACKSEEEVQSLK--FTEKNLINKI---------YTDSAEAKIPAVLDYLET 481
+ + + K K + + L+ L + + + A K+ + L
Sbjct: 299 DAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASGKLHLLDKLLAF 358
Query: 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541
+ G + L+F+ MLD + + R+DG R + F ++ +
Sbjct: 359 LYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVF 417
Query: 542 VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 601
+LS +AGGVG+ LTAA TVIF + + P + +QA RAHRIGQ SV V L+ DTV++
Sbjct: 418 LLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEE 477
Query: 602 IVWDVVRSKLENLGQVLDG 620
IV+ SKL+ +++G
Sbjct: 478 IVYRKAASKLQLTNMIIEG 496
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 392 (143.0 bits), Expect = 4.4e-33, P = 4.4e-33
Identities = 128/495 (25%), Positives = 246/495 (49%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 174 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 233
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN-RSGFTIVSSNTKRNI 272
++ P ++L P S +W ++W+ PS V+ +G + R+ F +
Sbjct: 234 NIPGPHMVLVPKSTLHNWMNEFKRWV---PSLRVICF--VGDKDVRAAFI-----RDEMM 283
Query: 273 PLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALL 332
P + + SY++V+K +++ +++ ++ DE+H +KN ++K + K+ LL
Sbjct: 284 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF--KSTNRLL 341
Query: 333 LSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKAT 392
L+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 342 LTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLKP- 397
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEVVK--GKIKACKSEEEV 449
++RR+K DV LP K+ +++L +++ L ++++V+ GK+ + +
Sbjct: 398 FLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNIL 457
Query: 450 QSLK--FTEKNLINKI-----YTDSAE-----AKIPAVLDYLETVIEAGCKFLIFAHHQP 497
L+ L + YT K+ A+ L + E G + LIF+
Sbjct: 458 MQLRKCCNHPYLFDGAEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTR 517
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
+LD + + + R+DG TP R+ + F + K +LS +AGG+G+ L +
Sbjct: 518 LLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLAS 577
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 614
A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++ +L+++
Sbjct: 578 ADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSI 637
Query: 615 ----GQVLDGHENSL 625
G+++D N L
Sbjct: 638 VIQQGRLIDQQSNKL 652
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 394 (143.8 bits), Expect = 6.6e-33, P = 6.6e-33
Identities = 146/508 (28%), Positives = 247/508 (48%)
Query: 173 KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTP 224
+L +Q DGV + L H ++LADEMGLGKTIQ I+ ++ F P +++ P
Sbjct: 488 ELRDYQLDGVNW-LAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVP 546
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISY 283
S W W P +VV L + + ++ TKR I + L + +Y
Sbjct: 547 LSTLTSWQREFDTWA--PDMNVVVYLGDVTSRKTIRDYEWINPQTKR-IKFNAL--LTTY 601
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++LK + +L + N+ + DE+H LKN + TL I ++ + LL++GTP +
Sbjct: 602 EILLKDKGVLGNINWAFLGVDEAHRLKNDDSL-LYKTL-IDFRSNHRLLITGTPLQNSLK 659
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
EL+ L L D +++ ++ + + KG G YQ LH +++ ++RR+KKDV
Sbjct: 660 ELWSLLHFLMSDKFESWEDFEDEHGKGRDNG-YQS------LHKVLEP-FLLRRVKKDVE 711
Query: 404 AQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKSE--EEVQSLK--FTEK 457
LP K Q + +D++ + +Q Y L R + + + S V LK
Sbjct: 712 KSLPAKVEQILRVDMSAQQ-KQFYKWILTRNFKALSKGTRGSSSGFLNIVMELKKCCNHA 770
Query: 458 NLINKIY---TDSAEAKIPAV---------LDYLETVI-EAGCKFLIFAHHQPMLDAIHQ 504
LI + D+ + + ++ LD L T + + G + LIF+ MLD +
Sbjct: 771 FLIKQPEDGENDAPQEHLQSLVRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILAD 830
Query: 505 LFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFA 563
K+ R+DG R+ + F E + +LS +AGG+G+ L +A TV+
Sbjct: 831 YLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIF 890
Query: 564 ELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-QVLDG 620
+ W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q +D
Sbjct: 891 DSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRMDT 950
Query: 621 HENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ L+ SS+ S+P ++ L + LK
Sbjct: 951 TGRTVLDNSSANSNSNPFNKEELSAILK 978
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 249 (92.7 bits), Expect = 7.4e-33, Sum P(2) = 7.4e-33
Identities = 56/148 (37%), Positives = 82/148 (55%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+V+ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 1635 ESVV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1693
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQV VNVY L+
Sbjct: 1694 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVYRLITR 1753
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 1754 GTLEEKIMGLQKFKM-NIANTVISQENS 1780
Score = 204 (76.9 bits), Expect = 7.4e-33, Sum P(2) = 7.4e-33
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1250 ENY-KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1308
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 1309 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---REYLNPLHYTGPPTER--I 1363
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1364 RLQHQVKRH----NLV-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1418
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1419 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1476
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1477 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 1531
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 1532 --AKSRAK-CDVDETVSSAALSEETEKPKL---KATGHVFQALQYL 1571
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 387 (141.3 bits), Expect = 7.7e-33, P = 7.7e-33
Identities = 126/495 (25%), Positives = 241/495 (48%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 173 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 232
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
++ P ++L P S +W ++W +P ++ + R+ F +P
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRW--VPSLRVICFVGDKDA--RAAFI-----RDEMMP 283
Query: 274 LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLL 333
+ + SY++V+K +++ +++ ++ DE+H +KN ++K + K+ LLL
Sbjct: 284 GEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF--KSTNRLLL 341
Query: 334 SGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393
+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLKP-F 397
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEVVKGKIKACKSEEEVQSL 452
++RR+K DV LP K+ +++L +++ L ++++V+ K K + L
Sbjct: 398 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRL-LNIL 456
Query: 453 KFTEKNLINKIYTDSAEAKIP--------------AVLDYLETVI-EAGCKFLIFAHHQP 497
K + D AE P VLD L + E G + LIF+
Sbjct: 457 MQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTR 516
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
+LD + + + R+DG TP R+ + F + + +LS +AGG+G+ L +
Sbjct: 517 LLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLAS 576
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 614
A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++ +L+++
Sbjct: 577 ADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSI 636
Query: 615 ----GQVLDGHENSL 625
G+++D N +
Sbjct: 637 VIQQGRLIDQQSNKM 651
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 241 (89.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 53/138 (38%), Positives = 77/138 (55%)
Query: 490 LIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546
LIF + MLD + KK V +R+DG P RQ +V +F E + +L+ K
Sbjct: 1650 LIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTK 1709
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
GG+GL LT A TVIF E W P + +QA DRAHRIGQ VNVY ++ T+++ + +
Sbjct: 1710 VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGL 1769
Query: 607 VRSKLENLGQVLDGHENS 624
+ K+ N+ + +NS
Sbjct: 1770 QKFKM-NIASTVVNQQNS 1786
Score = 211 (79.3 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 97/350 (27%), Positives = 157/350 (44%)
Query: 165 QIPAHIESKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATC--------- 212
++P I++ L +Q+DGV F ++ +L D+MGLGKT+Q I +
Sbjct: 1263 KLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 213 --FRDV----WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
R V P LI+ P SL HW Q+ P VVV + GG T+
Sbjct: 1323 EKTRSVESRALPSLIICPPSLTGHWENEFDQYA---PFLKVVVYA--GGP-----TV--R 1370
Query: 267 NTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK 326
T R D + SYDV +L + + + DE H +KN+Q+K A I
Sbjct: 1371 LTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEIT-- 1428
Query: 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-- 384
A + L+L+GTP + +EL+ + L P + R+ K S+ E+
Sbjct: 1429 ANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEA 1488
Query: 385 ----LHNLMKATV--MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF--RELEVV 436
L L K + M+RRLK+DVL+ LP K Q + ++ + +Q+Y F ++ VV
Sbjct: 1489 GVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQ-KQLYMDFTKKQKNVV 1547
Query: 437 KGKIKACK---SEEEV-QSLKFTEKNLINK--IYTDSAEAKIPAVLDYLE 480
+ I+ + ++ + Q+L++ K L N + ++ V DYL+
Sbjct: 1548 EKDIENSEIADGKQHIFQALQYMRK-LCNHPALVLSPNHPQLAQVQDYLK 1596
Score = 50 (22.7 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 261 FTIVSSNTKRNIPLDG-LFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAA 319
F + ++ +N L+G +F ++ +++L+ L+ +F + +A H+ + K T
Sbjct: 572 FLSIKDDSTKNW-LNGKVFRLVFQNILLEQNPELLQLSFDVYVALLEHY----KVKHTEK 626
Query: 320 TLPII--KKAQYALLLSGTP 337
TL + K Q L L TP
Sbjct: 627 TLDHVFSKHLQPILHLLNTP 646
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 388 (141.6 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 125/491 (25%), Positives = 237/491 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGK 202
+ ++ S A + ++D P+++++ KL +Q G+ + + ++G +LADEMGLGK
Sbjct: 135 EELLSENSKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYENGINGILADEMGLGK 194
Query: 203 TIQAIAVATC---FRDV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
T+Q I++ +R++ P ++L P S +W ++W +P + V ++ R
Sbjct: 195 TLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRW--VPSLKAVCLIGDR--EER 250
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ F R+ L G +++ SY++++ + + N++ ++ DE+H +KN ++K
Sbjct: 251 TAFI-------RDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKL 303
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
+ K LLL+GTP + EL+ L L PDV+ + ++ + G
Sbjct: 304 SEIVREF--KTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTNNCLG-- 359
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEV 435
E LH +++ ++RR+K DV L K+ ++++ +++ L +++++
Sbjct: 360 -DTKLVERLHTVLRP-FLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDIDI 417
Query: 436 VK--GKIKACKSEEEVQSLK--FTEKNLINKI-----YTDSAEAKIPA----VLD-YLET 481
+ GK+ + + L+ L + YT + + VLD L
Sbjct: 418 LNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPK 477
Query: 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541
+ E G + LIF+ +LD + + + R+DG TP RQ + F E + K
Sbjct: 478 LKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFL 537
Query: 542 -VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
+LS +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ + ++TV+
Sbjct: 538 FMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVE 597
Query: 601 DIVWDVVRSKL 611
+ + + KL
Sbjct: 598 ERIVERAEMKL 608
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 387 (141.3 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 141/483 (29%), Positives = 236/483 (48%)
Query: 174 LLPFQRDGVRF---ALQHGGRILLADEMGLGKTIQAIAVATCFRDVW----PVLILTPSS 226
L P+Q DGV++ +++ +L DEMGLGKT Q I++ R P L+L P +
Sbjct: 35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLA 94
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+ +W ++++ PS + V+ G + + ++N+ D F+++ +Y+
Sbjct: 95 VLENWRQELERFC---PS--LSVICYTGDKEKR------AELQQNLKSDPRFHVLLTTYE 143
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
+ LK L S +KI++ DE+H LKN Q TL + +LL+GTP + E
Sbjct: 144 MCLKDARYLKSWKWKILVVDEAHRLKN-QESLLHQTLKEFTVG-FRVLLTGTPIQNNLQE 201
Query: 345 LFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402
++ L + P V+ + V ++ N Y I + +ELH +++ ++RR+K +V
Sbjct: 202 VYSLLTFIQPSVFLPEAVEDFVNAYAD-----IQTEPALVDELHQVLQP-FLLRRVKAEV 255
Query: 403 LAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKG--KIKACKSEEEVQSLKFTEKN- 458
A+LP K VF ++ R A L R+L+ + K +Q K +
Sbjct: 256 AAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFRTDQSTKTRLLNVLMQLRKCVDHPY 315
Query: 459 LINKIYTDSAE-----AKIPAVLDYLETVI----EAGCKFLIFAHHQPMLDAIHQLFLKK 509
L + + + E + L L++++ E G L+F+ MLD + Q +L+
Sbjct: 316 LFDGVEPEPFEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDIL-QDYLEY 374
Query: 510 KVHCI-RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWT 568
+ + R+DG R + F KD V +LS KAGGVG+ LTAA TVIF + +
Sbjct: 375 RGYSYERLDGSVRGEERNLAIKNFSTKD-VFIFLLSTKAGGVGMNLTAADTVIFVDGDFN 433
Query: 569 PGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD-GHENSLEV 627
P + +QA RAHRIGQ V V LL DT+++I++ SKL V++ G + L+
Sbjct: 434 PQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQ 493
Query: 628 SSS 630
+ S
Sbjct: 494 AQS 496
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 387 (141.3 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 126/495 (25%), Positives = 241/495 (48%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 173 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 232
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
++ P ++L P S +W ++W +P ++ + R+ F +P
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRW--VPSLRVICFVGDKDA--RAAFI-----RDEMMP 283
Query: 274 LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLL 333
+ + SY++V+K +++ +++ ++ DE+H +KN ++K + K+ LLL
Sbjct: 284 GEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF--KSTNRLLL 341
Query: 334 SGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393
+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLKP-F 397
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEVVKGKIKACKSEEEVQSL 452
++RR+K DV LP K+ +++L +++ L ++++V+ K K + L
Sbjct: 398 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRL-LNIL 456
Query: 453 KFTEKNLINKIYTDSAEAKIP--------------AVLDYLETVI-EAGCKFLIFAHHQP 497
K + D AE P VLD L + E G + LIF+
Sbjct: 457 MQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTR 516
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
+LD + + + R+DG TP R+ + F + + +LS +AGG+G+ L +
Sbjct: 517 LLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLAS 576
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 614
A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++ +L+++
Sbjct: 577 ADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSI 636
Query: 615 ----GQVLDGHENSL 625
G+++D N +
Sbjct: 637 VIQQGRLIDQQSNKM 651
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 252 (93.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1096 LITDSG--KLYA-LDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1152
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1153 ISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1212
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1213 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1263
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1264 VVSLL-----LDDEELEKKLRLRQ 1282
Score = 194 (73.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 84/342 (24%), Positives = 151/342 (44%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 498 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 557
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 558 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDRKVIRRFW 612
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 613 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 671
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 672 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 729
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + AL ++ +
Sbjct: 730 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 788
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 789 QSSMGSTQQAQN---TTSSLMNLVMQFRKVCNHPELFERQET 827
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 252 (93.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1100 LITDSG--KLYA-LDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1156
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1157 ISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1216
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1217 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1267
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1268 VVSLL-----LDDEELEKKLRLRQ 1286
Score = 194 (73.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 84/342 (24%), Positives = 151/342 (44%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 501 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 560
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 561 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDRKVIRRFW 615
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 616 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 674
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 675 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 732
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + AL ++ +
Sbjct: 733 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 791
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 792 QSSMGSTQQAQT---TTSSLMNLVMQFRKVCNHPELFERQET 830
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 252 (93.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1106 LITDSG--KLYA-LDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1163 ISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1222
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1223 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1273
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1274 VVSLL-----LDDEELEKKLRLRQ 1292
Score = 194 (73.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 84/342 (24%), Positives = 151/342 (44%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 507 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 566
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 567 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDRKVIRRFW 621
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 680
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 681 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 738
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + AL ++ +
Sbjct: 739 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 797
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 798 QSSMGSTQQAQT---TTSSLMNLVMQFRKVCNHPELFERQET 836
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 231 (86.4 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 79/276 (28%), Positives = 139/276 (50%)
Query: 166 IPAHIESKLLPFQRDGVRFAL-QHGGRI--LLADEMGLGKTIQAIAVAT---CFRDVW-P 218
IP + +L +Q G+ + + + ++ +LADEMGLGKTIQ I++ C + W P
Sbjct: 610 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 669
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P+S+ L+W +++W PS +L+ G TK N F
Sbjct: 670 HLIIVPTSVMLNWEMELKRWC---PS--FKILTYYGAQKERKLKR-QGWTKPNA-----F 718
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY +VL+ N++ +I DE+ +KN +++R + L +Q LLL+GT
Sbjct: 719 HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNF--NSQRRLLLTGT 776
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKA 391
P + +EL+ + L P V+++ E+ + + G+ +G+ + E LH +++
Sbjct: 777 PLQNSLMELWSLMHFLMPHVFQSHREF-KEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRP 835
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
++RR+K DV Q+P K+ + V K R +Y
Sbjct: 836 -FLLRRVKVDVEKQMP-KKYEHVIRCRLSKRQRCLY 869
Score = 222 (83.2 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 58/160 (36%), Positives = 84/160 (52%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTP 521
I D + + AVL L + G + LIF MLD + Q FL H +R+DG T
Sbjct: 2038 IQYDCGKLQTLAVL--LRQLKAEGHRVLIFTQMTRMLDVLEQ-FLTYHGHLYLRLDGSTR 2094
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
RQAL+ F + +LS ++GGVG+ LT A TV+F + W P QA+DR HR
Sbjct: 2095 VEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHR 2154
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDG 620
IGQ V++Y L++ TV++ + K LG + ++G
Sbjct: 2155 IGQTRDVHIYRLISERTVEENILKKANQK-RMLGDMAIEG 2193
Score = 52 (23.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLSVK 77
L S +LP V P+P G L S+ P LS+K
Sbjct: 1075 LQPNSGSLP-QVLPSPLGVLSGTSRPPTPTLSLK 1107
Score = 46 (21.3 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 14 LDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGS 62
LD LE + +Q ++R + F S ++ A G+ L P P S
Sbjct: 1886 LDSLEEKRKRQRSERLERIFQLSEAHGALAPVYGTEVLDFCTLPQPVAS 1934
Score = 43 (20.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVPKL 74
LP + T L++APA +LG S Q L
Sbjct: 1672 LPSPASTQTLALAPALAPTLGGSSPSQTLSL 1702
Score = 42 (19.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P EI + + G+T+ ++ K IPL
Sbjct: 580 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 612
Score = 39 (18.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 26 AQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAP 59
A H+ + + S P +TL LS AP P
Sbjct: 1763 APAHTLTLAPASSSASLLAPASVQTLTLSPAPVP 1796
Score = 38 (18.4 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 38 SYKVEALPQGSRTLPLSVAPAP 59
S V A P G +P S P P
Sbjct: 1048 SLMVSASPAGPPLIPASRPPGP 1069
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 231 (86.4 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 79/276 (28%), Positives = 139/276 (50%)
Query: 166 IPAHIESKLLPFQRDGVRFAL-QHGGRI--LLADEMGLGKTIQAIAVAT---CFRDVW-P 218
IP + +L +Q G+ + + + ++ +LADEMGLGKTIQ I++ C + W P
Sbjct: 617 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 676
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P+S+ L+W +++W PS +L+ G TK N F
Sbjct: 677 HLIIVPTSVMLNWEMELKRWC---PS--FKILTYYGAQKERKLKR-QGWTKPNA-----F 725
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY +VL+ N++ +I DE+ +KN +++R + L +Q LLL+GT
Sbjct: 726 HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNF--NSQRRLLLTGT 783
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKA 391
P + +EL+ + L P V+++ E+ + + G+ +G+ + E LH +++
Sbjct: 784 PLQNSLMELWSLMHFLMPHVFQSHREF-KEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRP 842
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
++RR+K DV Q+P K+ + V K R +Y
Sbjct: 843 -FLLRRVKVDVEKQMP-KKYEHVIRCRLSKRQRCLY 876
Score = 222 (83.2 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 58/160 (36%), Positives = 84/160 (52%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTP 521
I D + + AVL L + G + LIF MLD + Q FL H +R+DG T
Sbjct: 2038 IQYDCGKLQTLAVL--LRQLKAEGHRVLIFTQMTRMLDVLEQ-FLTYHGHLYLRLDGSTR 2094
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
RQAL+ F + +LS ++GGVG+ LT A TV+F + W P QA+DR HR
Sbjct: 2095 VEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHR 2154
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDG 620
IGQ V++Y L++ TV++ + K LG + ++G
Sbjct: 2155 IGQTRDVHIYRLISERTVEENILKKANQK-RMLGDMAIEG 2193
Score = 50 (22.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 14 LDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGS 62
LD LE + QQ ++R + F S ++ A G+ L P P S
Sbjct: 1886 LDSLEEKRKQQRSERLERIFQLSEAHGALAPVYGTEVLDFCTLPQPVAS 1934
Score = 50 (22.7 bits), Expect = 8.0e-13, Sum P(3) = 8.0e-13
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLSVK 77
L S LP V P+P G L S+ P LS+K
Sbjct: 1083 LQPNSGPLP-QVLPSPLGVLSGTSRPPAPTLSLK 1115
Score = 45 (20.9 bits), Expect = 8.0e-13, Sum P(3) = 8.0e-13
Identities = 31/103 (30%), Positives = 41/103 (39%)
Query: 133 SGYNVEIENLHPLVQRAIASASAAPDLR-----EKYDQIPAHIESKLL----PFQRDGVR 183
SG V I L L QR +ASA + L K A + + P QR+ V
Sbjct: 1189 SGEVVSIGQLASLAQRPVASAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVH 1248
Query: 184 FALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226
+ GG+ L + IQA+A PV +L PSS
Sbjct: 1249 L-VSAGGQHHLISQPAHVALIQAVAPTP---GPTPVSVL-PSS 1286
Score = 42 (19.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P EI + + G+T+ ++ K IPL
Sbjct: 587 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 619
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 231 (86.4 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 79/276 (28%), Positives = 139/276 (50%)
Query: 166 IPAHIESKLLPFQRDGVRFAL-QHGGRI--LLADEMGLGKTIQAIAVAT---CFRDVW-P 218
IP + +L +Q G+ + + + ++ +LADEMGLGKTIQ I++ C + W P
Sbjct: 618 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 677
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P+S+ L+W +++W PS +L+ G TK N F
Sbjct: 678 HLIIVPTSVMLNWEMELKRWC---PS--FKILTYYGAQKERKLKR-QGWTKPNA-----F 726
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY +VL+ N++ +I DE+ +KN +++R + L +Q LLL+GT
Sbjct: 727 HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNF--NSQRRLLLTGT 784
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKA 391
P + +EL+ + L P V+++ E+ + + G+ +G+ + E LH +++
Sbjct: 785 PLQNSLMELWSLMHFLMPHVFQSHREF-KEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRP 843
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
++RR+K DV Q+P K+ + V K R +Y
Sbjct: 844 -FLLRRVKVDVEKQMP-KKYEHVIRCRLSKRQRCLY 877
Score = 222 (83.2 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 58/160 (36%), Positives = 84/160 (52%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTP 521
I D + + AVL L + G + LIF MLD + Q FL H +R+DG T
Sbjct: 2049 IQYDCGKLQTLAVL--LRQLKAEGHRVLIFTQMTRMLDVLEQ-FLTYHGHLYLRLDGSTR 2105
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
RQAL+ F + +LS ++GGVG+ LT A TV+F + W P QA+DR HR
Sbjct: 2106 VEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHR 2165
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDG 620
IGQ V++Y L++ TV++ + K LG + ++G
Sbjct: 2166 IGQTRDVHIYRLISERTVEENILKKANQK-RMLGDMAIEG 2204
Score = 50 (22.7 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLSVK 77
L S LP V P+P G L S+ P LS+K
Sbjct: 1083 LQPNSGPLP-QVLPSPLGVLSGTSRPPTPTLSLK 1115
Score = 46 (21.3 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 14 LDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGS 62
LD LE + +Q ++R + F S ++ A G+ L P P S
Sbjct: 1897 LDSLEEKRKRQRSERLERIFQLSEAHGALAPVYGTEVLDFCTLPQPVAS 1945
Score = 42 (19.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P EI + + G+T+ ++ K IPL
Sbjct: 588 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 620
Score = 41 (19.5 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 30/103 (29%), Positives = 40/103 (38%)
Query: 133 SGYNVEIENLHPLVQRAIASASAAPDLR-----EKYDQIPAHIESKLL----PFQRDGVR 183
SG V I L L QR +AS + L K A + + P QR+ V
Sbjct: 1189 SGEVVSIGQLASLTQRPVASTGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVH 1248
Query: 184 FALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226
+ GG+ L + IQA+A PV +L PSS
Sbjct: 1249 L-VSAGGQHHLISQPAHVALIQAVAPTP---GPTPVSVL-PSS 1286
Score = 40 (19.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVPKL 74
LP + T L++ PA +LG S Q L
Sbjct: 1681 LPSPASTQTLALPPALASTLGGSSPSQTLSL 1711
Score = 37 (18.1 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 32 PFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLG 64
P S S S P +TL LS A P +LG
Sbjct: 1781 PVSSSASLLA---PASVQTLTLSPAQVPVPTLG 1810
Score = 37 (18.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 41 VEALPQGSRTLPLSVAPAP 59
V A P G +P S P P
Sbjct: 1059 VSASPSGPPLIPASRPPGP 1077
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 251 (93.4 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1106 LITDSG--KLYA-LDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1163 ISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1222
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1223 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1273
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1274 VVSLL-----LDDEELEKKLRLRQ 1292
Score = 194 (73.4 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 84/342 (24%), Positives = 151/342 (44%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 507 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 566
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 567 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDRKVIRRFW 621
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 680
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 681 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 738
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + AL ++ +
Sbjct: 739 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 797
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 798 QSSMGSTQQAQT---TTSSLMNLVMQFRKVCNHPELFERQET 836
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 251 (93.4 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1099 LITDSG--KLYA-LDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1155
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1156 ISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1215
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1216 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1266
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1267 VVSLL-----LDDEELEKKLRLRQ 1285
Score = 193 (73.0 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 84/342 (24%), Positives = 150/342 (43%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 500 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 559
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 560 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDRKVIRRFW 614
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 615 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 673
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 674 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 731
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K + + + AL ++ +
Sbjct: 732 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLL 790
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 791 QSSMGSTQQAQN---TTSSLMNLVMQFRKVCNHPELFERQET 829
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 225 (84.3 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 59/167 (35%), Positives = 87/167 (52%)
Query: 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD-YLETVIEAGCKFLIFAH 494
V KI ++ F +K L+ Y D + + VLD L+ ++ G + LIF
Sbjct: 962 VSRKINPLHQASTRLAIAFPDKRLLQ--Y-DCGKLQ---VLDRLLKDLVSNGHRVLIFTQ 1015
Query: 495 HQPMLDAIHQLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553
+LD + Q FL H +R+DG T RQ L F D + +LS ++GG+G+
Sbjct: 1016 MTKVLDILEQ-FLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGIN 1074
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
LT A TVIF + W P QA+DR+HRIGQ V++Y L++ TV+
Sbjct: 1075 LTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVE 1121
Score = 218 (81.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 84/304 (27%), Positives = 144/304 (47%)
Query: 147 QRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKT 203
QR + +P L Q+P L +Q+ G+ + H +LADEMGLGKT
Sbjct: 420 QRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKT 479
Query: 204 IQAIAVAT---CFRDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS--QLGGSN 257
IQ IA+ C ++ W P LI+ P+S+ L+W +++L P +I+ Q
Sbjct: 480 IQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFL--PGFKILTYYGNPQERKEK 537
Query: 258 RSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317
RSG+ +T I SY +VL+ ++ +I DE+H +KN +++R
Sbjct: 538 RSGW--YKPDTWHVC-------ITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRW 588
Query: 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYP-------DVYKNVHEYGNRYCKG 370
+ L A++ LLL+GTP + +EL+ L L P + N+ ++ + + K
Sbjct: 589 QSLLNF--NAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKP 646
Query: 371 GVFGIYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDM 423
I +G + E LH +++ ++RRLK +V Q+P K V+ ++++
Sbjct: 647 MDRLIEEGQDMNPEAMNTVAKLHRVLRP-YLLRRLKTEVEKQMPAKYEHVVYCQLSKRQ- 704
Query: 424 RQIY 427
R +Y
Sbjct: 705 RFLY 708
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 249 (92.7 bits), Expect = 4.8e-32, Sum P(3) = 4.8e-32
Identities = 71/220 (32%), Positives = 111/220 (50%)
Query: 426 IYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAE--AKIPAV----LDY- 478
I+ R L+ V K + E + K T + ++ D E AK+PA+ LD
Sbjct: 1646 IFQALRYLQNVCNHPKLVLRQSE-ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCG 1704
Query: 479 --LETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQ 533
++T + + LIF + MLD + Q L++ V +R+DG P + RQ +V F
Sbjct: 1705 IGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFN 1764
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
+ +L+ GG+GL LT A TVIF E W P +QA DRAHRIGQ VNVY L
Sbjct: 1765 SDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRL 1824
Query: 594 LANDTVDDIVWDVVRSKLENLGQVLDGHENSLE-VSSSQI 632
+ +++++ + + + K+ V+ SL+ + +SQI
Sbjct: 1825 ITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQI 1864
Score = 200 (75.5 bits), Expect = 4.8e-32, Sum P(3) = 4.8e-32
Identities = 74/286 (25%), Positives = 126/286 (44%)
Query: 165 QIPAHIESKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVAT---CFRDV-- 216
++P I +L +Q+ G+ F ++ +L D+MGLGKT+Q I + R
Sbjct: 1342 KVPVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTAN 1401
Query: 217 ---WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
P L++ P +L HW ++++L+ VL L + GF + + +I
Sbjct: 1402 LANLPSLVICPPTLTGHWVYEVEKFLDQGS-----VLRPL---HYYGFPVGREKLRSDIG 1453
Query: 274 LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLL 333
+ SYD V K + +F + DE H +KN + K + A + KA + L+L
Sbjct: 1454 TKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRL--KANHRLIL 1511
Query: 334 SGTPALSRPIELFKQLEALYPDVYKNVHEYGNRY---------CKGGVFGIYQGASNHEE 384
SGTP + +EL+ + L P ++ R+ K G E
Sbjct: 1512 SGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEA 1571
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF 430
LH + ++RR+K+DVL LP K Q + +++ +R +Y F
Sbjct: 1572 LHRQV-LPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLR-LYEDF 1615
Score = 46 (21.3 bits), Expect = 4.8e-32, Sum P(3) = 4.8e-32
Identities = 18/84 (21%), Positives = 34/84 (40%)
Query: 115 WTFPVPFLSSAEKVLSEISGYNVEIENLHPLVQR-----AIASASAAPDLREKYDQIPAH 169
W + + E +L ++ + E + L P +R A A+A+A D +
Sbjct: 55 WETRIAAAQTVEAILKQVPPWQPEFQVL-PKKERCATNTATAAAAAEEDSCQSSGSNSTT 113
Query: 170 IESKLLPFQRDGVRFALQHGGRIL 193
+LL F ++ L G R++
Sbjct: 114 ASERLLSFDEFDLQQILHKGARLI 137
Score = 40 (19.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYG 364
TP L P+E KQ + +V N YG
Sbjct: 1014 TPKLVMPLETLKQTP-VSSEVINNCVYYG 1041
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 16 FLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPL 53
FL E +Q QR S+P S K A Q + L +
Sbjct: 1534 FLGTE--KQFVQRFSRPILSSRDAKSSAKEQEAGVLAM 1569
Score = 37 (18.1 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 17/78 (21%), Positives = 30/78 (38%)
Query: 360 VHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVA 419
+ E N++ +G + Q +E H+ +R L L + QV V
Sbjct: 352 LRELINQHAQGAGKAVLQTREQMDEAHSRWLEDAALRLLCVLCLDRFGDFVSDQVVAPVR 411
Query: 420 EKDMRQIYALFRELEVVK 437
E + + L +E+E K
Sbjct: 412 ETCAQVLGTLVKEMEASK 429
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 632 IRSSPAKQKTLDSFLKRCNNVDDSEHQQKL 661
+R S K +++DD EH KL
Sbjct: 1664 LRQSEELTKVTSQLALSNSSLDDIEHSAKL 1693
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 242 (90.2 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 55/148 (37%), Positives = 81/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+V+ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 1638 ESVV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1696
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1697 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1756
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 1757 GTLEEKIMGLQKFKM-NIANTVISQENS 1783
Score = 203 (76.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1253 ENY-KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQR 1311
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 1312 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---REYLNPLHYTGPPTER--I 1366
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1367 RLQHQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1421
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1422 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1479
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1480 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 1534
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 1535 --AKSRAK-CDVDETVSSAALSEETEKPKL---KATGHVFQALQYL 1574
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 237 (88.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 60/190 (31%), Positives = 99/190 (52%)
Query: 448 EVQSLKFTEKNLINK--IYTDS--AEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAI 502
E+ L N ++K ++ D KI A+ L+T+I + K LIF+ +LD +
Sbjct: 923 ELHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDIL 982
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562
+ +R+DG T RQ L+ +F E D+ +LS KAGG G+ L A+ VI
Sbjct: 983 EMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVII 1042
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 622
+ S+ P D QA DRAHR+GQ VN+ L+ D++++ + + ++KL L + +
Sbjct: 1043 FDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLA-LDSYISEDK 1101
Query: 623 NSLEVSSSQI 632
S +V S++
Sbjct: 1102 KSQDVLESKV 1111
Score = 203 (76.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 87/314 (27%), Positives = 144/314 (45%)
Query: 171 ESKLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCFRDV---WPVLILTP 224
E L +Q+ G+ + Q+ +LAD+MGLGKT Q I+ + + P L++ P
Sbjct: 569 EISLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVP 628
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT-IVSSNTKRNIPLDGLFNIIS- 282
SS +W Q++ P +I L R I+ N + + +N+ +
Sbjct: 629 SSTLENWLREFQKFA--PALKIEPYYGSL--QEREELRDILERNAGKYDVIVTTYNLAAG 684
Query: 283 --YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
YDV + L + NF +V+ DE H LKN+ ++R A + I +A + LLL+GTP +
Sbjct: 685 NKYDV-----SFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKI--RANFRLLLTGTPLQN 737
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL---HNLMKATVM--- 394
EL LE + P+++ + E + K NH L + +A M
Sbjct: 738 NLKELMSLLEFIMPNLFISKKESFDAIFKQRA-KTTDDNKNHNPLLAQEAITRAKTMMKP 796
Query: 395 --IRRLKKDVLAQLPVKRR--QQVFLDVAEKDM--RQIYALFRELEVVK-GKI-KACKSE 446
+RR K VL LP K Q L+ +K + ++I + ++K G++ K K +
Sbjct: 797 FILRRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAKEK 856
Query: 447 EEVQSLKFTEKNLI 460
++QS + KNLI
Sbjct: 857 SKLQSS--SSKNLI 868
Score = 41 (19.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 427 YALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA- 485
Y L + + GKI A K + + EK LI ++T VLD LE V+
Sbjct: 938 YQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQ--------VLDILEMVLSTL 989
Query: 486 GCKFL 490
KFL
Sbjct: 990 DYKFL 994
Score = 38 (18.4 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 409 KRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKS 445
KRR + +E+ + +I R ++ IK C S
Sbjct: 340 KRRAAASANESERLLDKITQSIRGYNAIESVIKKCSS 376
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 223 (83.6 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 48/146 (32%), Positives = 85/146 (58%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVT 530
K+ A+ + + I G K L+F++ MLD + + ++K R+DG TP RQ+LV
Sbjct: 529 KMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVD 588
Query: 531 EFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590
+F + ++S KAGG+GL L +A+ V+ + +W P +QA+DR+ R GQ V V
Sbjct: 589 DFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVV 648
Query: 591 YYLLANDTVDDIVW--DVVRSKLENL 614
+ LL+ +++++V+ V + +L N+
Sbjct: 649 FRLLSAGSLEELVYTRQVYKQQLSNI 674
Score = 214 (80.4 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 87/302 (28%), Positives = 139/302 (46%)
Query: 166 IPAHIESKLLPFQRDGVRFALQ-----HGGRILLADEMGLGKTIQAIAVA---------- 210
+PA I +LL QR+GV+F HGG +L D+MGLGKTIQ IA
Sbjct: 131 VPASINCRLLEHQREGVKFMYNLYKNNHGG--ILGDDMGLGKTIQTIAFLAAVYGKDGDA 188
Query: 211 --TCF--RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+C D PVLI+ PSS+ +W + +W + +S GSNR I+
Sbjct: 189 GESCLLESDKGPVLIICPSSIIHNWESEFSRWASF------FKVSVYHGSNRD--MILEK 240
Query: 267 NTKRNIPLDGLFNIISYDVVLKLQNILMSS-NFKIVIADESHFLKNAQAKRTAATLPIIK 325
R + + + S+D ++Q ++S N++IVIADE+H LKN ++K A L I
Sbjct: 241 LKARGVEV----LVTSFDT-FRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEI-- 293
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYP----------DVYKNVHEYGNRYCKGGVFGI 375
K + + L+GT ++ ELF E + P D Y + G R F +
Sbjct: 294 KTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERF-V 352
Query: 376 YQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEV 435
+ L +L++ M+RR K++ + L + + V + R++Y +L
Sbjct: 353 QIADKRKQHLGSLLRK-YMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPE 411
Query: 436 VK 437
++
Sbjct: 412 IQ 413
Score = 46 (21.3 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 437 KGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA 485
K K K C EE++ S +K K Y AE K +L++ V+ A
Sbjct: 800 KKKRKGCSEEEDMSSSNREQKR--EK-YKMLAEFKGMEILEFSRWVLSA 845
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 253 (94.1 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1104 LITDSG--KLHA-LDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1160
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1161 ISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1220
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1221 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1271
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1272 VVSLL-----LDDEELEKKLRQRQ 1290
Score = 189 (71.6 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 83/342 (24%), Positives = 150/342 (43%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 503 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 562
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 563 AHLAERENIWGPFLIISPASTLNNWH---QEFARFVPK--FKVLPYWGNPHDRKVIRKFW 617
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 618 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 676
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 677 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 734
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + +Y + +
Sbjct: 735 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQQTSRQ-KLLYQALKNKISIDDL 792
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+++ S Q + T +L+N + P + + ET
Sbjct: 793 LQS--SMGTTQQAQTTTSSLMNLVMQFRKVCNHPELFERQET 832
Score = 44 (20.5 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 399 KKDV-LAQLPVKRRQQVFLDVAEKDMRQIY---ALFRELEVVKGKIKACKSEEEVQSLKF 454
KK + + QL +RR+ V+L + +K++ + Y A R L + K A + EV+
Sbjct: 270 KKHMSIEQLNARRRK-VWLSIVKKELPKAYKQKASARNLFLTNSKKLAHQCMREVRRAAL 328
Query: 455 -TEKN 458
+KN
Sbjct: 329 QAQKN 333
Score = 43 (20.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 289 LQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELF 346
LQN++ SS+ K V H + ++ + + + L ++ + P+E +
Sbjct: 976 LQNLVFSSHCKAVTGYSDHVIHRRRSATSCVRCCQVTELPSFLCIASPRVTAVPLEFY 1033
Score = 37 (18.1 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 430 FRELEVVKGKIKACKSE 446
F+E + +KGK+K K +
Sbjct: 217 FKEEKKLKGKLKKVKKK 233
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 380 (138.8 bits), Expect = 6.8e-32, P = 6.8e-32
Identities = 137/489 (28%), Positives = 231/489 (47%)
Query: 173 KLLPFQRDGVR-----FALQHGGRILLADEMGLGKTIQAIAVATCFRDVWP----VLILT 223
KL P+Q DGV + +QHG +L DEMGLGKT Q I++ LIL
Sbjct: 45 KLRPYQLDGVNWLVQCYQVQHG--CILGDEMGLGKTCQTISLLLYLTKKLTNKERSLILC 102
Query: 224 PSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII-- 281
P S+ +W ++++ P V + G+ + + ++N+ F ++
Sbjct: 103 PLSVLSNWKEELERFA--PGLSFVTYV----GNKEERYKL-----QQNLKEQSHFRVLLT 151
Query: 282 SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAK--RTAATLPIIKKAQYALLLSGTPAL 339
+Y++ LK L ++ ++ DE+H LKN + T LP+ ++LLL+GTP
Sbjct: 152 TYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPV----GFSLLLTGTPIQ 207
Query: 340 SRPIELFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397
+ EL+ L + PD++ K V E+ Y + + + +ELHNL++ ++RR
Sbjct: 208 NSLQELYSLLSFIEPDIFPRKQVKEFVEYYQ-----AVEKESEPAKELHNLLQP-FLLRR 261
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKI--KACKSEEEVQSLK 453
+K +V A LP K+ + V R+ Y L ++L+ +G K +Q K
Sbjct: 262 VKSEVTADLP-KKVEVVLYHGMSALQRKYYKAILTKDLDAFEGGTGRKVMLQNVLIQLRK 320
Query: 454 -FTEKNLINKIYTD---------SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAI 502
L N + + A K+ +LD L + + + G + L+F+ +LD +
Sbjct: 321 CVAHPYLFNGVEPEPFEIGDHIVEASGKL-CLLDKLLSFLYDGGHRVLLFSQMTKLLDIL 379
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562
+ R+DG R + F ++ + +LS +AGGVG+ LTAA TVIF
Sbjct: 380 QDYMDYRGYSYERLDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIF 438
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 622
+ + P + +QA RAHRIGQ V + L+ DTV++I++ SKL +++G +
Sbjct: 439 TDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEGGQ 498
Query: 623 NSLEVSSSQ 631
+L V Q
Sbjct: 499 FALGVHKPQ 507
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 383 (139.9 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 151/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 465 LKKQPSYIGGHESLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 523
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 524 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 581
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 582 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 634
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 635 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 691
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 692 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 745
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 746 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 805
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 806 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 865
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + +
Sbjct: 866 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 925
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 926 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 969
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 383 (139.9 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 151/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 448 LKKQPSYIGGHESLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 506
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 507 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 564
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 565 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 617
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 618 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 674
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 675 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 728
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 729 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 788
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 789 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 848
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + +
Sbjct: 849 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 908
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 909 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 952
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 251 (93.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 67/204 (32%), Positives = 110/204 (53%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS K+ A LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1093 LITDSG--KLYA-LDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1149
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1150 ISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1209
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1210 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1260
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1261 VVSLL-----LDDEELEKKLRLRQ 1279
Score = 189 (71.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 84/342 (24%), Positives = 150/342 (43%)
Query: 155 AAPDLREKYD-QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVA 210
A P +R D P KL +Q G+ + + G +LADEMGLGKT+Q+IA+
Sbjct: 500 ANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALL 559
Query: 211 TCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
+ +W P LI++P+S +W Q++ P VL G +
Sbjct: 560 AHLAERENIWGPFLIISPASTLNNWH---QEFTRFVPK--FKVLPYWGNPHDR------K 608
Query: 267 NTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
K D F+++ SY +V++ ++ ++ DE+ LK++ + R L
Sbjct: 609 KKKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQF- 667
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
+ + LLL+GTP + EL+ L + P ++ + HE N + + + S +E
Sbjct: 668 -QCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDE 725
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGK 439
LH ++K M+RR+KKDV +L K ++ + + AL ++ +
Sbjct: 726 NQLSRLHMILKP-FMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 784
Query: 440 IKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481
+ S ++ Q+ T +L+N + P + + ET
Sbjct: 785 QSSMGSTQQAQN---TTSSLMNLVMQFRKVCNHPELFERQET 823
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 378 (138.1 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 130/471 (27%), Positives = 227/471 (48%)
Query: 174 LLPFQRDGVRFALQ--H-GGRILLADEMGLGKTIQAIAV----ATCFRDVWPVLILTPSS 226
L P+Q GV + Q H +L DEMGLGKT Q IA+ A D P LIL P S
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 107
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+ +W ++++ P V + G ++ ++++ + F+++ +Y+
Sbjct: 108 VLSNWKEEMERFA---PGLSCVTYA--GDKDKRACL------QQDLKQESRFHVLLTTYE 156
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
+ LK + L S + +++ DE+H LKN Q+ TL ++LLL+GTP + E
Sbjct: 157 ICLKDASFLKSFPWSVLVVDEAHRLKN-QSSLLHKTLSEFSVV-FSLLLTGTPIQNSLQE 214
Query: 345 LFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402
L+ L + PD++ + V ++ RY I + + + EL+ L++ ++RR+K +V
Sbjct: 215 LYSLLSFVEPDLFSKEQVEDFVQRYQD-----IEKESESASELYKLLQP-FLLRRVKAEV 268
Query: 403 LAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKI-KACKSEEEVQSLK--FTEKN 458
+LP K ++ ++ + A L ++L+ + + K K + + L+
Sbjct: 269 ATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLSQLRKCVDHPY 328
Query: 459 LINKIYTD---------SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK 509
L + + + A K+ + L + G + L+F+ MLD + +
Sbjct: 329 LFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYR 388
Query: 510 KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTP 569
R+DG R + F ++ + +LS +AGGVG+ LTAA TVIF + + P
Sbjct: 389 GYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGGVGMNLTAADTVIFFDSDFNP 447
Query: 570 GDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+ +QA RAHRIGQ SV V L+ DTV++IV+ SKL+ +++G
Sbjct: 448 QNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 378 (138.1 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 130/475 (27%), Positives = 231/475 (48%)
Query: 173 KLLPFQRDGVR-----FALQHGGRILLADEMGLGKTIQAIAV----ATCFRDVWPVLILT 223
+L +Q +GV F Q+G +L DEMGLGKT Q IA+ A D P LIL
Sbjct: 47 RLRSYQLEGVNWLARCFHCQNG--CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 104
Query: 224 PSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII-- 281
P S+ +W ++++ P V+ + G + ++++ + F+++
Sbjct: 105 PLSVLSNWTEEMERFA---PGLSCVMYA---GDKEE-----RARLQQDLKQESRFHVLLT 153
Query: 282 SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSR 341
+Y++ LK + L S + +++ DE+H LKN + L ++LLL+GTP +
Sbjct: 154 TYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEF--SVVFSLLLTGTPIQNS 211
Query: 342 PIELFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399
EL+ L + PD++ + V ++ RY I + + + ELH L++ ++RR+K
Sbjct: 212 LQELYSLLSFVEPDLFPKEQVGDFVQRYQD-----IEKESDSASELHKLLQP-FLLRRVK 265
Query: 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKI-KACKSEEEVQSLK---- 453
+V +LP K ++ ++ + A L ++L+ + ++ K K + + L+
Sbjct: 266 AEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAKKVKLQNVLSQLRKCVD 325
Query: 454 ----FTEKNL---INKIYTDSAEAKIP-AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQL 505
F + + + ++ + + A L +L + G + L+F+ MLD +
Sbjct: 326 HPYLFEGETVPFFLTLLFMTTPLKNLELAALSFL--FLARGHRVLLFSQMTQMLDILQDY 383
Query: 506 FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL 565
+ R+DG R + F ++ V +LS +AGGVG+ LTAA TVIF +
Sbjct: 384 MDYRGYSYERVDGSVRGEERHLAIKNFGQQP-VFVFLLSTRAGGVGMNLTAADTVIFVDS 442
Query: 566 SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+ P + +QA RAHRIGQ SV V L+ DTV++IV+ SKL+ +++G
Sbjct: 443 DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNAIIEG 497
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 378 (138.1 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 133/474 (28%), Positives = 230/474 (48%)
Query: 174 LLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAV----ATCFRDVWPVLILTPSS 226
L P+Q +GV + Q + +L DEMGLGKT Q IAV A D P LIL P S
Sbjct: 48 LRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPLS 107
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+ +W +++ P V + G ++ ++++ + F+++ +Y+
Sbjct: 108 VLSNWKEEMER---CAPGLCCVTYA---GDKEE-----RAHLQQDLKQESGFHVLLTTYE 156
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
+ LK + L S + +++ DE+H LKN Q +L A + LLL+GTP + E
Sbjct: 157 ICLKDASFLKSFPWSVLVVDEAHRLKN-QNSLLHKSLSEFSVA-FRLLLTGTPIQNSLQE 214
Query: 345 LFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402
L+ L + PD++ + V ++ RY I + + + EL+ L++ ++RR+K +V
Sbjct: 215 LYSLLSFVEPDLFSKEEVEDFVQRY-----EDIEKESESASELYKLLQP-FLLRRVKAEV 268
Query: 403 LAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKIKACKSEEEVQSLKFTEKNLIN 461
A+LP K ++ ++ + A L ++LE+ + ++Q++ + ++
Sbjct: 269 AAELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVD 328
Query: 462 KIYT-DSAEAK--------IPA-----VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLF 506
Y D E + I A +LD L + + G + L+F+ MLD +
Sbjct: 329 HPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYM 388
Query: 507 LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566
+ R+DG R + F ++ + +LS +AGGVG+ LTAA TVIF +
Sbjct: 389 DYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFIFLLSTRAGGVGMNLTAADTVIFVDSD 447
Query: 567 WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+ P + +QA RAHRIGQ SV V L+ DTV++I+ SKL+ +++G
Sbjct: 448 FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEG 501
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 236 (88.1 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 74/279 (26%), Positives = 141/279 (50%)
Query: 167 PAHIESKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCF---RDVW-PV 219
P + + L P+Q G+ + + G +LADEMGLGKTIQ+IAV +++W P
Sbjct: 1155 PTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPF 1214
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS-NTKRNIPLDGLF 278
LI+TP S +W ++ +P +++ G+ + TI N K+ + F
Sbjct: 1215 LIVTPKSTLHNWKNEFAKF--VPAFKVI----PYWGTQQQRTTIRKYWNPKKLYHRNSPF 1268
Query: 279 NII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+++ SY+V+++ + ++ ++ DE+H +K++ + R + + LLL+GT
Sbjct: 1269 HVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSF--NCRNRLLLTGT 1326
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG-GVFGIYQGASN-HE--ELHNLMKAT 392
P + EL+ L + P + + E+ + K + QG N H+ LH ++K
Sbjct: 1327 PIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKP- 1385
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFR 431
M+RR+K+DV ++P K +V+ ++ + +++Y R
Sbjct: 1386 FMLRRIKRDVENEMPSKTEVEVYCNLTHRQ-KKLYQSIR 1423
Score = 219 (82.2 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 59/203 (29%), Positives = 106/203 (52%)
Query: 461 NKIYTDSAEAKIPAVLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGG 519
+K DS + + VLD L+ + G + LI++ M++ + + +K +R+DG
Sbjct: 1760 SKSLNDSGKLQ---VLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGS 1816
Query: 520 TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRA 579
+ R+ +V +FQ + A +LS +A G+G+ LT+A TVIF + W P QA+DRA
Sbjct: 1817 SKLDDRRDMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRA 1876
Query: 580 HRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQ 639
HR+GQ V VY L+ +T+++ + + K + V+ G E + ++ +
Sbjct: 1877 HRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAG--GKFESNPEEL-DQVGEN 1933
Query: 640 KTLDSFLKRCNNVDDSEHQQKLK 662
+ + SFL +DD E +++ K
Sbjct: 1934 EAI-SFL-----LDDDELEERFK 1950
Score = 42 (19.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 378 GASNHEELHNLMKATVMIRRLK-----KD--VLAQLPVKRRQQVFLDVAEKDMRQIYALF 430
G +N +++ +MK + I+ K KD + A+ VK + +KD R+
Sbjct: 911 GIANCKKIAQMMKRELKIKNQKPPKATKDNQIRAKKLVKE-MGAYWRKFDKDEREAK--- 966
Query: 431 RELEVVKGKIKACKSEEEVQSLKFTEKNL 459
R E K + K EEEVQ K ++ L
Sbjct: 967 RRAE--KEEANQRKREEEVQEAKRQQRKL 993
Score = 38 (18.4 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 447 EEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476
+E+ +K T LI T +P VL
Sbjct: 1694 KEISLVKLTMNGLITNETTKELSESLPTVL 1723
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 242 (90.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 63/179 (35%), Positives = 98/179 (54%)
Query: 458 NLINKIYTDSAEAKIPAVLDYLETVIEAGC--KFLIFAHHQPMLDAI-HQLFLKK--KVH 512
N+ + + ++A I A ET+ E+ + LIFA + MLD + ++LF K V
Sbjct: 1750 NVQQQQHQQQSKAAIAAATAN-ETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSVT 1808
Query: 513 CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDL 572
+R+DG R ++V +F + +L+ GG+GL LT A TVIF E W P
Sbjct: 1809 YLRMDGSVETMKRHSIVNQFNSDPTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMKD 1868
Query: 573 IQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS-LEVSSS 630
+QA DRAHRIGQ VNVY L+ + T+++ + + + KL N+ + H+NS L+ S+
Sbjct: 1869 LQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMGLQKFKL-NIANTVINHDNSSLQTMST 1926
Score = 200 (75.5 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 86/311 (27%), Positives = 141/311 (45%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +P I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q I + R
Sbjct: 1365 ENYP-LPIRINTELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQTICIIAGDDYHR 1423
Query: 215 DV------------WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
V P L++ P SL HW I+++ + + ++ +G N S
Sbjct: 1424 RVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCS---DSTMKPMTYMG--NPSERQ 1478
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
S K + L I+SYD++ +IL +F I DE H +KNA+ K T A
Sbjct: 1479 AQRSKFKDHNVL-----IMSYDIMRNDIDILSEMHFNYCILDEGHIIKNAKTKLTQAAKR 1533
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG---------GVF 373
+ ++ + L+LSGTP + +EL+ + L P + Y K
Sbjct: 1534 L--QSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPILASKDPKCSTK 1591
Query: 374 GIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
G E LH + ++RRLK+DVLA LP K Q + +++ +R +Y F
Sbjct: 1592 DQEAGVLAMEALHRQV-LPFLLRRLKEDVLADLPPKIIQDRYCNLSPLQIR-LYDYFSRT 1649
Query: 434 ---EVVKGKIK 441
E +K +++
Sbjct: 1650 QFKETIKNEVE 1660
Score = 40 (19.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 632 IRSSPAKQKTLDSFLKRC----NNVDDSEHQQKLK 662
I SP K +L L C +NV +HQQ+ K
Sbjct: 1728 IAHSP-KLVSLKELLLECGIGLSNVQQQQHQQQSK 1761
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 383 (139.9 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 133/474 (28%), Positives = 228/474 (48%)
Query: 173 KLLPFQRDGVRFALQ--HGGR-ILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPS 225
+L +Q +GV + +Q HG +L DEMGLGKT Q IA+ D P LIL P
Sbjct: 39 RLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLILCPL 98
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SY 283
S+ +W ++++ P V + G + ++++ + F+++ +Y
Sbjct: 99 SVLSNWKEEMERFA---PGLSCVTYT---GDKEE-----RARRQQDLRQESGFHVLLTTY 147
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQA--KRTAATLPIIKKAQYALLLSGTPALSR 341
++ LK + L S ++ ++ DE+H LKN + RT + ++ + LLL+GTP +
Sbjct: 148 EICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVV----FRLLLTGTPIQNS 203
Query: 342 PIELFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399
EL+ L + PD++ + V ++ Y I + + + ELH L++ ++RR+K
Sbjct: 204 LQELYSLLSVVEPDLFCREQVEDFVQCYQD-----IEKESKSASELHRLLRP-FLLRRVK 257
Query: 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKI-KACKSEEEVQSLK--FT 455
V +LP K ++ ++ + A L ++L+ + + K K + + L+
Sbjct: 258 AQVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLTQLRKCVD 317
Query: 456 EKNLINKIYTDSAEAK---IPA-----VLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLF 506
L + + + E I A +LD L + G + L+F+ MLD +
Sbjct: 318 HPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYM 377
Query: 507 LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566
+ R+DG R + F K + +LS +AGGVG+ LTAA TVIF +
Sbjct: 378 DYRGYSYERVDGSVRGEERHLAIKNFG-KQPIFVFLLSTRAGGVGMNLTAADTVIFVDSD 436
Query: 567 WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+ P + +QA RAHRIGQ SV V L+ DTV++IV+ SKL+ V++G
Sbjct: 437 FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490
Score = 40 (19.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 609 SKLENLGQVLDGHENSLEV 627
S+LE+L + DG E S E+
Sbjct: 695 SELEDLEDLEDGDETSAEL 713
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 379 (138.5 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 130/481 (27%), Positives = 234/481 (48%)
Query: 167 PAHIES-KLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WP 218
P+ ++S KL +Q G+ + + H ++ +LADEMGLGKT+Q I+ R V P
Sbjct: 176 PSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGP 235
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P S +W +W P+ V+VL G + IV RNI L+ F
Sbjct: 236 FLIIVPKSTLDNWRREFLKWT---PNVNVLVLH---GDKDTRADIV-----RNIILEARF 284
Query: 279 NII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+++ SY++V++ +N L ++ ++ DE+H +KN Q+ + K + LL++GT
Sbjct: 285 DVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNR--LLITGT 342
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIR 396
P + EL+ L L PD++ + + + + + ++LH+++ ++R
Sbjct: 343 PLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVI--QQLHSVLNP-FLLR 399
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF-RELEVVKGKIKACKSEEEVQSLKFT 455
R+K DV L K V++ + + ++ +L ++++ V G + + + + ++
Sbjct: 400 RVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQ 459
Query: 456 EKNLINKIYT-DSAEAKIP--------------AVLD-YLETVIEAGCKFLIFAHHQPML 499
+ N Y + AE P +LD L+ + E G + LIF+ +L
Sbjct: 460 LRKCCNHPYLFEGAEPGPPYTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLL 519
Query: 500 DAIHQL-FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAA 557
D + + + +C RIDG T R + E+ + + K +L+ +AGG+G+ L A
Sbjct: 520 DILEDYCYFRDFEYC-RIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTA 578
Query: 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV 617
TVI + W P +QA DRAHRIGQ V+VY + + +++ V + KL L Q+
Sbjct: 579 DTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLR-LDQL 637
Query: 618 L 618
+
Sbjct: 638 V 638
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 230 (86.0 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 64/171 (37%), Positives = 86/171 (50%)
Query: 467 SAEAKIPAVLDYL-ETVIEAGCKFLIFAHHQPMLDAIHQLFLK-KKVHCIRIDGGTPPAS 524
+A K+ +LD L ++ G K LIF+ + LD + + +C RIDG A
Sbjct: 623 TASGKM-LLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQAD 681
Query: 525 RQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ 584
RQA + F D K +LS +AGG G+ L AA TVI + W P +QA+DRAHRIGQ
Sbjct: 682 RQAQIKAFNTDKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQ 741
Query: 585 VSSVNVYYLLANDTVDDIVWDVVRSK--LENLGQVLDGHENSLEVSSSQIR 633
V VY L TV+ + + SK LE L + G SL S+ R
Sbjct: 742 TKPVIVYRLATKGTVEQTLLEKADSKRRLERL-VIQKGKFKSLLSESTMSR 791
Score = 203 (76.5 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 77/281 (27%), Positives = 131/281 (46%)
Query: 165 QIPAHIES-KLLPFQRDGVRF--ALQHGGRI-LLADEMGLGKTIQAIAVATCFRD---VW 217
Q PA + K+ +Q +G+ + +L G +LADEMGLGKT+QAI++ F++
Sbjct: 192 QQPAPVTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHNVSG 251
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P LI P S +W +W P I VL R+ N + D
Sbjct: 252 PFLISAPLSTVSNWVDEFARWT---PG-IKTVLYHGTRDERAQLRKKFMNLRDQKSPDFP 307
Query: 278 FNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
SY++ + + L ++ +I DE H LKN + L + LL++GTP
Sbjct: 308 VVCTSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSY--NSANRLLITGTP 365
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE---------LHNL 388
+ EL+ L L P+++ +++ + N + V G ++ E +H++
Sbjct: 366 LQNNITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLD-NNGQTDMIERRKRTLVSTMHSI 424
Query: 389 MKATVMIRRLKKDVLAQLPVKRRQQVF--LDVAEKDM-RQI 426
+K ++RR+K DV + LP KR ++ L + +KD+ R+I
Sbjct: 425 LKP-FLLRRVKTDVESALPKKREYILYAPLTLEQKDLYREI 464
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 230 (86.0 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 56/175 (32%), Positives = 98/175 (56%)
Query: 460 INKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDG 518
+++ T+SA+ + LD L +++ G + LI+ M+D + + ++ + IR+DG
Sbjct: 1291 MDRFITESAKLR---KLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDG 1347
Query: 519 GTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDR 578
+ R+ LV ++Q ++ +LS +AGG+G+ LTAA TVIF + W P QA DR
Sbjct: 1348 SSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDR 1407
Query: 579 AHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDGHENSLEVSSSQI 632
AHR+GQ V VY LL T+++ + D + K E + QV ++G + + ++
Sbjct: 1408 AHRLGQTRQVTVYRLLVRGTIEERMRDRAKQK-EQVQQVVMEGKTQEKNIKTIEV 1461
Score = 209 (78.6 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 81/325 (24%), Positives = 148/325 (45%)
Query: 193 LLADEMGLGKTIQAIAVATCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVV 248
+LADEMGLGKT+Q+I+V + +W P L++TP+S +W I ++L P +I
Sbjct: 728 ILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFL--PQFKI-- 783
Query: 249 VLSQLGGSN-----RSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIA 303
L G +N R + + +N P + + SY +V+ N L ++ +I
Sbjct: 784 -LPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVM--VTSYQMVVTDANYLQKMKWQYMIL 840
Query: 304 DESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEY 363
DE+ +K++Q+ R L + LLL+GTP + EL+ L + P ++ + E+
Sbjct: 841 DEAQAIKSSQSSRWKNLLSF--HCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEF 898
Query: 364 GNRYCKGGVFGIYQGAS-NHEEL---HNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVA 419
+ K N ++L H ++K M+RR+KK+V ++L K V D+
Sbjct: 899 NEWFSKDIESHAEANTKLNQQQLRRLHMILKP-FMLRRVKKNVQSELGDKIEIDVLCDLT 957
Query: 420 EKDMRQIYALFRELEVVKGKIKACKSEEEVQ---SLKFTEKNLINKIYTDSAEAKIPAVL 476
++ + L ++ I+ + + S +++NLIN + P +
Sbjct: 958 QRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLF 1017
Query: 477 DYLETVIEAGCKFLIFAHHQPMLDA 501
+ + +++ F F ML A
Sbjct: 1018 ERAD--VDSPFSFTTFGKTTSMLTA 1040
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 381 (139.2 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 151/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 464 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 522
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 523 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 580
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 581 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 633
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 634 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 690
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 691 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 744
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 745 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 804
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 805 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 864
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + +
Sbjct: 865 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 924
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 925 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 968
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 381 (139.2 bits), Expect = 1.8e-31, P = 1.8e-31
Identities = 151/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 478 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 536
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 537 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 594
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 595 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 647
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 648 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 704
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 705 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 758
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 759 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 818
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 819 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 878
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + +
Sbjct: 879 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 938
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 939 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 982
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 228 (85.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 66/221 (29%), Positives = 112/221 (50%)
Query: 447 EEVQSLKFTEKNLINKIYTDSAEAKIPAVLD-YLETVIEAGCKFLIFAHHQPMLDAIHQL 505
EEV+S+ + + + I+ S + ++ LD L ++G + L+F ++D +
Sbjct: 799 EEVESVLNSSRLTNDLIWRVSGKFEL---LDRVLPKFKKSGHRVLMFFQMTQIMDIMEDF 855
Query: 506 FLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAE 564
K + +R+DG T RQ ++ F D D +LS +AGG+GL L A TVI +
Sbjct: 856 LRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFD 915
Query: 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W P +QA+DRAHRIGQ + V + L+ ND+V++++ + KL+ +DG
Sbjct: 916 TDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLD-----IDG--KV 968
Query: 625 LEVSSSQIRSSPAKQKTLDSFLKRCNNVD----DSEHQQKL 661
++ +S+ +Q ++FLKR D D+E L
Sbjct: 969 IQAGKFDNKSTAEEQ---EAFLKRLLEADANGADNEENDSL 1006
Score = 209 (78.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 92/348 (26%), Positives = 163/348 (46%)
Query: 159 LREKYDQIPAH-IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCF- 213
++EK + P + KL +Q G+ + + + + +LADEMGLGKTIQ+I++ T
Sbjct: 485 IKEKITEQPTILVGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLI 544
Query: 214 --RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271
+ LI+ P S +W ++W PS V+V GS + +R+
Sbjct: 545 EKKHENKFLIIVPLSTITNWTLEFEKWA---PSIKVIVYK---GSQQQ---------RRS 589
Query: 272 IPLD---GLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK 326
+ D G F ++ +Y+ V++ + +L ++ +I DE H +KNAQ+K + TL K
Sbjct: 590 LQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSK-LSQTLRTYYK 648
Query: 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRY-CKGGVFGIYQGASNHEE- 384
+ L+L+GTP + EL+ L + P ++ +V + + + G + EE
Sbjct: 649 TKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEE 708
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKKDV LP K + + +++ Y L++++
Sbjct: 709 SLLVIRRLHKVLRP-FLLRRLKKDVEKDLPDKVEKVLKCNLSGLQ----YVLYQQML--- 760
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA 485
K A +V K K L NKI P V + +E+V+ +
Sbjct: 761 -KHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVESVLNS 807
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 220 (82.5 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 72/286 (25%), Positives = 141/286 (49%)
Query: 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRD---VW-PV 219
P + KL +Q G+ + + G +LADEMGLGKT+Q+I+V + +W P
Sbjct: 835 PKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPF 894
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLD--GL 277
L++ P+S +W I ++ +P + + GS + + ++N+ D
Sbjct: 895 LVIAPASTLHNWQQEITRF--VPKLKCI----PYWGSTKDRKILRKFWCRKNMTYDENSP 948
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
F+++ SY +V+ S ++ +I DE+ +K++ + R + L K + LLL+G
Sbjct: 949 FHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAF--KCRNRLLLTG 1006
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE----LHNLMKA 391
TP + EL+ L + P ++ + +E+ + K +E+ LH ++K
Sbjct: 1007 TPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKP 1066
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
M+RR+KK+V ++L K ++V+ D+ ++ AL R++ + +
Sbjct: 1067 -FMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAE 1111
Score = 219 (82.2 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 53/150 (35%), Positives = 86/150 (57%)
Query: 476 LDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQE 534
LD L ++A + LI+ M+D + + ++ +R+DG + + R+ +VTE+Q
Sbjct: 1434 LDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQT 1493
Query: 535 KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594
+ ++ +LS +AGG+G+ LTAA TVIF + W P QA DRAHRIGQ V VY +
Sbjct: 1494 RPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFI 1553
Query: 595 ANDTVDDIVWDVVRSKLENLGQ--VLDGHE 622
T+++ + V+R+K + Q V+ G E
Sbjct: 1554 TRGTIEERI--VIRAKEKEEVQKVVISGGE 1581
Score = 43 (20.2 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 411 RQQVFLDVAEKDMRQIYALFRE 432
+QQV ++A K++ ++Y + ++
Sbjct: 623 QQQVIKEIARKEIPRVYKIIQQ 644
Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQ 348
A R+A++LP+ K+A S TP +LF +
Sbjct: 184 AARSASSLPVPKEA------SETPFRDASTDLFDE 212
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 380 (138.8 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 151/524 (28%), Positives = 247/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 466 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 524
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N TK
Sbjct: 525 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWTHHQTK 582
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 583 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 635
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 636 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 692
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 693 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 746
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 747 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 806
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 807 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 866
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + +
Sbjct: 867 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 926
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 927 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 970
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 375 (137.1 bits), Expect = 2.5e-31, P = 2.5e-31
Identities = 134/472 (28%), Positives = 227/472 (48%)
Query: 173 KLLPFQRDGVRFALQ--H-GGRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPS 225
+L +Q +GV + +Q H +L DEMGLGKT Q IA+ D P L+L P
Sbjct: 39 RLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPL 98
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SY 283
S+ +W ++++ P V + G + ++++ + F+++ +Y
Sbjct: 99 SVLSNWKEEMERFA---PGLSCVTYT---GDKEE-----RARLQQDLRQESGFHVLLTTY 147
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
++ LK + L S ++ ++ DE+H LKN Q+ TL A + LLL+GTP +
Sbjct: 148 EICLKDASFLKSFSWSVLAVDEAHRLKN-QSSLLHRTLSEFS-AVFRLLLTGTPIQNSLR 205
Query: 344 ELFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401
EL+ L + PD++ + V ++ RY I + + + ELH L++ ++RR+K
Sbjct: 206 ELYSLLCVVEPDLFCREQVEDFVQRYQD-----IEKESKSASELHRLLQP-FLLRRVKAQ 259
Query: 402 VLAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKI-KACKSEEEVQSLK--FTEK 457
V +LP K V+ ++ + A L ++L+ + + K K + + L+
Sbjct: 260 VATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHP 319
Query: 458 NLINKIYTDSAEAK---IPA-----VLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLK 508
L + + + E I A +LD L + G + L+F+ MLD +
Sbjct: 320 YLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDY 379
Query: 509 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWT 568
+ R+DG R + F + + +LS +AGGVG+ LTAA TVIF + +
Sbjct: 380 RGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFN 438
Query: 569 PGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
P + +QA RAHRIGQ SV V L+ DTV++IV+ SKL+ V++G
Sbjct: 439 PQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 374 (136.7 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 130/471 (27%), Positives = 226/471 (47%)
Query: 174 LLPFQRDGVRFALQ--H-GGRILLADEMGLGKTIQAIAV----ATCFRDVWPVLILTPSS 226
L P+Q GV + Q H +L DEMGLGKT Q IA+ A D P LIL P S
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 107
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+ +W ++++ P V + G ++ ++++ + F+++ +Y+
Sbjct: 108 VLSNWKEEMERFA---PGLSCVTYA--GDKDKRACL------QQDLKQESRFHVLLTTYE 156
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
+ LK + L S + +++ DE+H LKN Q+ TL ++LLL+GTP + E
Sbjct: 157 ICLKDASFLKSFPWSVLVVDEAHRLKN-QSSLLHKTLSEFSVV-FSLLLTGTPIQNSLQE 214
Query: 345 LFKQLEALYPDVY--KNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402
L+ L + PD++ + V ++ RY I + + + EL+ L++ ++RR+K +V
Sbjct: 215 LYSLLSFVEPDLFSKEQVEDFVQRYQD-----IEKESESASELYKLLQP-FLLRRVKAEV 268
Query: 403 LAQLPVKRRQQVFLDVAEKDMRQIYA-LFRELEVVKGKI-KACKSEEEVQSLK--FTEKN 458
+LP K ++ ++ + A L ++L+ + ++ K K + + L+
Sbjct: 269 ATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPY 328
Query: 459 LINKIYTD---------SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK 509
L + + + A K+ + L + G + L+F+ MLD + +
Sbjct: 329 LFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYR 388
Query: 510 KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTP 569
R+DG R + F ++ LS +AGGVG+ LTAA TVIF + + P
Sbjct: 389 GYSYERVDGSVRGEERHLAIKNFGQQPIF--TFLSTRAGGVGMNLTAADTVIFFDSDFNP 446
Query: 570 GDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
+ +QA RAHRIGQ SV V L+ DTV++IV+ SKL+ +++G
Sbjct: 447 QNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 497
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 231 (86.4 bits), Expect = 3.4e-31, Sum P(3) = 3.4e-31
Identities = 79/276 (28%), Positives = 139/276 (50%)
Query: 166 IPAHIESKLLPFQRDGVRFAL-QHGGRI--LLADEMGLGKTIQAIAVAT---CFRDVW-P 218
IP + +L +Q G+ + + + ++ +LADEMGLGKTIQ I++ C + W P
Sbjct: 620 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 679
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P+S+ L+W +++W PS +L+ G TK N F
Sbjct: 680 HLIIVPTSVMLNWEMELKRWC---PS--FKILTYYGAQKERKLKR-QGWTKPNA-----F 728
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY +VL+ N++ +I DE+ +KN +++R + L +Q LLL+GT
Sbjct: 729 HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNF--NSQRRLLLTGT 786
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKA 391
P + +EL+ + L P V+++ E+ + + G+ +G+ + E LH +++
Sbjct: 787 PLQNSLMELWSLMHFLMPHVFQSHREF-KEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRP 845
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
++RR+K DV Q+P K+ + V K R +Y
Sbjct: 846 -FLLRRVKVDVEKQMP-KKYEHVIRCRLSKRQRCLY 879
Score = 223 (83.6 bits), Expect = 3.4e-31, Sum P(3) = 3.4e-31
Identities = 60/170 (35%), Positives = 89/170 (52%)
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVH 512
+F + LI Y + + + AVL L + G + LIF MLD + Q FL H
Sbjct: 2018 QFPDLRLIQ--YDCAGKLQTLAVL--LRQLKAEGHRVLIFTQMTRMLDVLEQ-FLTYHGH 2072
Query: 513 C-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD 571
+R+DG T RQAL+ F + +LS ++GGVG+ LT A TV+F + W P
Sbjct: 2073 LYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTM 2132
Query: 572 LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDG 620
QA+DR HRIGQ V++Y L++ TV++ + K LG + ++G
Sbjct: 2133 DAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQK-RMLGDMAIEG 2181
Score = 50 (22.7 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 14 LDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGS 62
LD LE + QQ ++R + F S ++ A G+ L P P S
Sbjct: 1873 LDSLEEKRKQQRSERLERIFQLSEAHGALAPVYGTEVLDFCTLPQPVAS 1921
Score = 50 (22.7 bits), Expect = 4.5e-12, Sum P(4) = 4.5e-12
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 32 PFSDSPSYKVEALPQGSRTLPL-SVAPAPKGSLGDFSKEQVPKLSVK 77
P S P V P T PL V P+P G + S+ P LS+K
Sbjct: 1072 PASRPPG-PVLLSPLQPNTGPLPQVLPSPMGVMSGTSRPPTPTLSLK 1117
Score = 43 (20.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 26 AQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLS 75
A H+ + + S +P +TL LS AP P +L D S Q L+
Sbjct: 1749 APAHTLTLAPAASSASLLVPTSVQTLTLSPAPVPVPTL-DPSATQTLALA 1797
Score = 42 (19.8 bits), Expect = 9.8e-12, Sum P(3) = 9.8e-12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P EI + + G+T+ ++ K IPL
Sbjct: 590 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 622
Score = 41 (19.5 bits), Expect = 3.4e-31, Sum P(3) = 3.4e-31
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 2 EVDDEWEFSAEELDFLEREALQQIAQRHSKPFSDS 36
E ++E E ++ + + E +++ AQ S SDS
Sbjct: 469 EDEEEVEANSSDCELEETRDVEEAAQEDSSSQSDS 503
Score = 41 (19.5 bits), Expect = 4.5e-12, Sum P(4) = 4.5e-12
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 120 PFLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKY 163
P L E+SG + +NL V+ + AA + E Y
Sbjct: 1385 PLLKLVHSPSPEVSGEFIMAKNLPRKVKPCVMGLKAAWKISEAY 1428
Score = 38 (18.4 bits), Expect = 7.0e-11, Sum P(4) = 7.0e-11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 41 VEALPQGSRTLPLSVAPAP 59
V A P G+ +P S P P
Sbjct: 1061 VSASPAGTPVVPASRPPGP 1079
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 241 (89.9 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 54/148 (36%), Positives = 81/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+++ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 1640 ESIV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1698
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1699 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1758
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 1759 GTLEEKIMGLQKFKM-NIANTVISQENS 1785
Score = 207 (77.9 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y+ IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1255 ENYE-IPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1313
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 1314 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---REYLNPLHYTGPPTER--V 1368
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1369 RLQHQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1423
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1424 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1481
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1482 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 1536
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 1537 --AKSRAK-CDVDETVSSAALSEETEKPKL---KATGHVFQALQYL 1576
Score = 38 (18.4 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 7 WEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALP 45
W F + + R AL+ + S +S S+ + LP
Sbjct: 523 WPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILP 561
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 234 (87.4 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 68/237 (28%), Positives = 118/237 (49%)
Query: 444 KSEEEVQSLKFTEKNLINKIYTDSA--EAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDA 501
K+ V F ++++I + D + K+ A+ L G K L+F MLD
Sbjct: 1740 KNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDI 1799
Query: 502 IHQLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560
+ ++FL + IR+DG T RQ +VT+F + + S ++G +G+ LTAA+ V
Sbjct: 1800 L-EIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVV 1858
Query: 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW--DVVRSKLENLGQVL 618
IF + W P QA DR HRIGQ V+V+ + TV++ +W + + KL+N+ +
Sbjct: 1859 IFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNIC-IN 1917
Query: 619 DGHENSLEVSSSQIRSSPAKQK----TLDS----FLKRCNNVDDSE-HQQKLKYRKL 666
G+ N+ S + P K +D+ F+ + NN DD + ++ +L + ++
Sbjct: 1918 MGNFNNSNTHSKITDTDPTHNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQV 1974
Score = 217 (81.4 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 79/283 (27%), Positives = 140/283 (49%)
Query: 158 DLREKY-DQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATC- 212
++ EK+ +IP I++ L +Q G+ + L + I +LADEMGLGKT+Q I++ +
Sbjct: 645 NMDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYL 704
Query: 213 --FRDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTK 269
+ ++W P L++ P+S+ ++W ++++ P +I LS G N V K
Sbjct: 705 AYYFNIWGPHLVIVPTSILINWEIELKRFC--PCFKI---LSYYGNQNERYKKRVGWFNK 759
Query: 270 RNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329
+ + I SY V+K + +K +I DE+H +KN KR L + K
Sbjct: 760 DSFHIC----ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSL--KRDN 813
Query: 330 ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH-----EE 384
LL++GTP + EL+ L L P+++ + ++ + I + +H +
Sbjct: 814 CLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDR 873
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVK----------RRQQVFLD 417
LH +++ ++ RRLKK+V ++P K RRQQ+ D
Sbjct: 874 LHTVIRPYIL-RRLKKNVEKEMPNKYEHIIKCKLTRRQQILYD 915
Score = 37 (18.1 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 MEVDDEWEFSAEELDFLEREA 21
M DE E EE++ L+ EA
Sbjct: 247 MSSTDESENKEEEINMLDDEA 267
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 234 (87.4 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 68/237 (28%), Positives = 118/237 (49%)
Query: 444 KSEEEVQSLKFTEKNLINKIYTDSA--EAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDA 501
K+ V F ++++I + D + K+ A+ L G K L+F MLD
Sbjct: 1740 KNATRVYHDAFLKQSIIFPLNKDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDI 1799
Query: 502 IHQLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560
+ ++FL + IR+DG T RQ +VT+F + + S ++G +G+ LTAA+ V
Sbjct: 1800 L-EIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVV 1858
Query: 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW--DVVRSKLENLGQVL 618
IF + W P QA DR HRIGQ V+V+ + TV++ +W + + KL+N+ +
Sbjct: 1859 IFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNIC-IN 1917
Query: 619 DGHENSLEVSSSQIRSSPAKQK----TLDS----FLKRCNNVDDSE-HQQKLKYRKL 666
G+ N+ S + P K +D+ F+ + NN DD + ++ +L + ++
Sbjct: 1918 MGNFNNSNTHSKITDTDPTHNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQV 1974
Score = 217 (81.4 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 79/283 (27%), Positives = 140/283 (49%)
Query: 158 DLREKY-DQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATC- 212
++ EK+ +IP I++ L +Q G+ + L + I +LADEMGLGKT+Q I++ +
Sbjct: 645 NMDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYL 704
Query: 213 --FRDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTK 269
+ ++W P L++ P+S+ ++W ++++ P +I LS G N V K
Sbjct: 705 AYYFNIWGPHLVIVPTSILINWEIELKRFC--PCFKI---LSYYGNQNERYKKRVGWFNK 759
Query: 270 RNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329
+ + I SY V+K + +K +I DE+H +KN KR L + K
Sbjct: 760 DSFHIC----ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSL--KRDN 813
Query: 330 ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH-----EE 384
LL++GTP + EL+ L L P+++ + ++ + I + +H +
Sbjct: 814 CLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDR 873
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVK----------RRQQVFLD 417
LH +++ ++ RRLKK+V ++P K RRQQ+ D
Sbjct: 874 LHTVIRPYIL-RRLKKNVEKEMPNKYEHIIKCKLTRRQQILYD 915
Score = 37 (18.1 bits), Expect = 4.1e-31, Sum P(3) = 4.1e-31
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 MEVDDEWEFSAEELDFLEREA 21
M DE E EE++ L+ EA
Sbjct: 247 MSSTDESENKEEEINMLDDEA 267
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 242 (90.2 bits), Expect = 4.2e-31, Sum P(3) = 4.2e-31
Identities = 55/148 (37%), Positives = 81/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+V+ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 1639 ESVV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1697
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1698 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1757
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 1758 GTLEEKIMGLQKFKM-NIANTVISQENS 1784
Score = 206 (77.6 bits), Expect = 4.2e-31, Sum P(3) = 4.2e-31
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1254 ENY-KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1312
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 1313 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---KEYLNPLHYTGPPTER--I 1367
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1368 RLQHQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1422
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1423 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1480
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1481 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 1535
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 1536 --AKSRAK-CDVDETVSSAALSEETEKPKL---KATGHVFQALQYL 1575
Score = 38 (18.4 bits), Expect = 4.2e-31, Sum P(3) = 4.2e-31
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 7 WEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALP 45
W F + + R AL+ + S +S S+ + LP
Sbjct: 523 WPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILP 561
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 242 (90.2 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 55/148 (37%), Positives = 81/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKD 536
E+V+ A + LIF + MLD + LK V +R+DG PP R ++V+ F
Sbjct: 1639 ESVV-AQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1697
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1698 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1757
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + ENS
Sbjct: 1758 GTLEEKIMGLQKFKM-NIANTVISQENS 1784
Score = 205 (77.2 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 92/346 (26%), Positives = 153/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I ++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1254 ENY-KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1312
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
+ P+ L++ P +L HW + ++ + E + L G
Sbjct: 1313 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS---REYLNPLHYTGPPTER--I 1367
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1368 RLQHQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1422
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1423 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1480
Query: 383 EE---------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ LH + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1481 EQEAGVLAMDALHRQV-LPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQV-QLYEDF--- 1535
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S +E+ K+ A + L YL
Sbjct: 1536 --AKSRAK-CDVDETVSSATLSEETEKPKL---KATGHVFQALQYL 1575
Score = 38 (18.4 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 7 WEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALP 45
W F + + R AL+ + S +S S+ + LP
Sbjct: 523 WPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILP 561
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 229 (85.7 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 53/148 (35%), Positives = 80/148 (54%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAI-HQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKD 536
E V+ A + LIF + MLD + H L + V +R+DG P R ++V+ F
Sbjct: 1633 EAVV-AQHRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDP 1691
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1692 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1751
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENS 624
T+++ + + + K+ N+ + EN+
Sbjct: 1752 GTLEEKIMGLQKFKM-NIANTVISQENA 1778
Score = 207 (77.9 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 92/346 (26%), Positives = 155/346 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVAT---CFR 214
E Y +IP I+++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I + C R
Sbjct: 1247 ENY-KIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCLR 1305
Query: 215 ----------DVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
D P+ L++ P +L HW + ++ + E + L G
Sbjct: 1306 AQEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCS---KEYLNPLHYTGPPTERAR- 1361
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ KR+ L + SYDVV + + F I DE H +KN + K + A
Sbjct: 1362 -LQYQVKRH----NLI-VASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1415
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y ++LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1416 LT--ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1473
Query: 383 EE-------LHNLMKATV--MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL 433
E+ + L + + ++RR+K+DVL LP K Q + ++ + Q+Y F
Sbjct: 1474 EQEAVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCVLSPLQV-QLYEDF--- 1529
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479
K + K C +E V S+ E+ K+ A + L YL
Sbjct: 1530 --AKSRAK-CDIDETVSSISLREETEKPKL---KATGHVFQALQYL 1569
Score = 42 (19.8 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 607 VRSKLENLGQVLDGHENSLEVS 628
++S LENLG++ D + E S
Sbjct: 1815 MKSVLENLGELWDQEQYDTEYS 1836
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 375 (137.1 bits), Expect = 8.2e-31, P = 8.2e-31
Identities = 150/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 460 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 518
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 519 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 576
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 577 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 629
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 630 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 686
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 687 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 740
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 741 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 800
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 801 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 860
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHR G +S VN+Y L+ +V++ + +
Sbjct: 861 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERA 920
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 921 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 964
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 375 (137.1 bits), Expect = 8.2e-31, P = 8.2e-31
Identities = 150/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 460 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 518
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 519 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 576
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 577 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 629
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 630 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 686
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 687 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 740
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 741 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 800
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 801 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 860
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHR G +S VN+Y L+ +V++ + +
Sbjct: 861 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERA 920
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 921 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 964
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 375 (137.1 bits), Expect = 8.2e-31, P = 8.2e-31
Identities = 150/524 (28%), Positives = 248/524 (47%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 461 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 519
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 520 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 577
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 578 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 630
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 631 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 687
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 688 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 741
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 742 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 801
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKA 547
LIF+ MLD + + ++ R+DG R+ + F E + +LS +A
Sbjct: 802 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA 861
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ L +A TV+ + W P + +QA+ RAHR G +S VN+Y L+ +V++ + +
Sbjct: 862 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERA 921
Query: 608 RSK--LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ K L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 922 KKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 965
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 225 (84.3 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 71/227 (31%), Positives = 117/227 (51%)
Query: 193 LLADEMGLGKTIQAIAVATCF---RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVV 248
+LADEMGLGKTI I++ + VW P LI+ PSS+ +W ++W P +I
Sbjct: 803 ILADEMGLGKTIMTISLIAYLAVQKGVWGPHLIVVPSSVLFNWEMEFKRWC--PGLKIFT 860
Query: 249 V--LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADES 306
S+ +NR G++ SN I SY +V+ I + +I DE+
Sbjct: 861 YHGTSRDRKANRKGWS--KSNAFHVC-------ITSYSMVMSDHLIFRRKKWVYMILDEA 911
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H +KN + +R L + LLL+GTP + +EL+ + L PD++++ E+ +
Sbjct: 912 HVIKNFKTQRWQNMLHF--NTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHREFQDW 969
Query: 367 YCKGGVFGIYQGASN-HEELHNLMKATV---MIRRLKKDVLAQLPVK 409
+ V G+ +G + +E++ N + A + ++RRLKKDV Q+P K
Sbjct: 970 F-SNPVTGMIEGGDDVNEDIINRLHAVLRPFLLRRLKKDVEKQMPPK 1015
Score = 222 (83.2 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 56/151 (37%), Positives = 79/151 (52%)
Query: 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKV 511
L F +K LI Y D + + A+L L + + G + LIF MLD I + FL
Sbjct: 1366 LYFPDKRLIQ--Y-DCGKLQQLAIL--LRRLKQQGHRALIFTQMTKMLD-IFETFLNLHA 1419
Query: 512 HC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
+ +R+DG T RQ L F + +LS ++GG+GL LT A TVIF + W P
Sbjct: 1420 YTYLRLDGSTKIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPS 1479
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 601
QA+DR HRIGQ VN+Y + T+++
Sbjct: 1480 MDAQAQDRCHRIGQTREVNIYRFITQHTIEE 1510
Score = 63 (27.2 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 240 NIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVV-LKLQNILMSSN 297
+I +I+ ++S+ S++ +GFT+ +SN + +P F + Y + L L N
Sbjct: 740 SISTKDIINIVSKKANSSQPTGFTLNTSNVRTKVPFLLKFPLREYQHIGLDWLVSLYEKN 799
Query: 298 FKIVIADESHFLKNAQAKRTAATLPIIK 325
++ADE K A L + K
Sbjct: 800 LNGILADEMGLGKTIMTISLIAYLAVQK 827
Score = 52 (23.4 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 105 KATWNAKERLWTFPVPFLSSAEKVLSEISG-YNVEIENLHPLVQRAIASASAAPDLREKY 163
K N K+ T P+PF S AE+ L++ S I+ +R +S + E+
Sbjct: 360 KGICNIKD---TTPIPF-SLAEETLTDKSTPIKTSIQQPQKKQRRESSSTQLNKQITEQI 415
Query: 164 DQIPAHIESKLLPFQRDGVRFALQ 187
Q IE +P ++ ++ Q
Sbjct: 416 QQQQQPIEEITIPIEQQQMQLLAQ 439
Score = 43 (20.2 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 411 RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINK 462
+Q V+ K+ + L +++ K KI+ K EEE ++ + ++ + +K
Sbjct: 2095 QQYVYSKQHTKEKEKERKLLMKMKKEKDKIEKAKQEEERRAKEKRDQKIHSK 2146
Score = 38 (18.4 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLK 662
EN + + +EN E + + R K+ ++ ++ N ++ + +K K
Sbjct: 1746 ENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEK 1796
Score = 37 (18.1 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVG 551
P S + + K D K LS GGVG
Sbjct: 2297 PTSTSSSSSSSGRKRDRKKQRLSKSNGGVG 2326
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 225 (84.3 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 51/142 (35%), Positives = 77/142 (54%)
Query: 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALV 529
AK + + L ++ ++G + LIF+ MLD + V R+DG T RQ +V
Sbjct: 588 AKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIV 647
Query: 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
F + A +LS +AGG GL LT A TVI ++ + P QAEDR HRIGQ V
Sbjct: 648 DTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVT 707
Query: 590 VYYLLANDTVDDIVWDVVRSKL 611
++ L+ TVD+ ++++ + KL
Sbjct: 708 IFRLVTKSTVDENIYEIAKRKL 729
Score = 197 (74.4 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 90/316 (28%), Positives = 147/316 (46%)
Query: 174 LLPFQRDGVRFAL---QHG--GRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTP 224
L P+Q GV F L + G G IL ADEMGLGKTIQAI T D P L++ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAIL-ADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCP 271
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTI-VSSNTKRNIPLDGLFNI--I 281
+S+ +W +++W PS V+ Q G+ R+ ++ ++S +K P FN+ +
Sbjct: 272 ASVLENWERELRKWC---PSFTVL---QYHGAARAAYSRELNSLSKAGKPPP--FNVLLV 323
Query: 282 SYDVVLKL-------QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
Y + + + +L + V+ DE+H LK+ + R + + + A L+L+
Sbjct: 324 CYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLT 383
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV- 393
GTP + EL+ LE + PD++ + + + EL MK+ +
Sbjct: 384 GTPLQNDLHELWSLLEFMLPDIFTTENVDLKKLLN----------AEDTELITRMKSILG 433
Query: 394 --MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACK-SEEEVQ 450
++RRLK DV+ QL V + Q+V + E+ Y E + + K S + +
Sbjct: 434 PFILRRLKSDVMQQL-VPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLN 492
Query: 451 SL-KFTEKNLINKIYT 465
SL K K I+ +T
Sbjct: 493 SLAKALPKRQISNYFT 508
Score = 41 (19.5 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 121 FLSSAEKVLSEISGYN-VEIENLHPLVQRAIASASAAPDLREKYDQIPAHIES--KLLP- 176
F S ++V+ E+ G+N I L L Q + L +K+ + A + +LLP
Sbjct: 544 FECSLDRVIEEVKGFNDFRIHQL--LFQYGVNDTKGT--LSDKHVMLSAKCRTLAELLPS 599
Query: 177 FQRDGVR 183
++ G R
Sbjct: 600 MKKSGHR 606
Score = 37 (18.1 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 432 ELEVVKGKIKACKSEEEVQSLK 453
++++V G+ + EEEV+ K
Sbjct: 78 DVKIVNGEDLLLEDEEEVEETK 99
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 248 (92.4 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 65/204 (31%), Positives = 107/204 (52%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521
+ TDS + LD L T +++ G + LI++ M+D + + + +K +R+DG +
Sbjct: 1127 LITDSGKLH---TLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1183
Query: 522 PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHR 581
+ R+ +V +FQ + D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR
Sbjct: 1184 ISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1243
Query: 582 IGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+GQ V VY L+ T+++ + + K E V+ G + K K
Sbjct: 1244 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKE 1294
Query: 642 LDSFLKRCNNVDDSEHQQKLKYRK 665
+ S L +DD E ++KL+ R+
Sbjct: 1295 VVSLL-----LDDEELEKKLRLRQ 1313
Score = 181 (68.8 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 77/309 (24%), Positives = 140/309 (45%)
Query: 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRD---VW-PV 219
P KL +Q G+ + + G +LADEMGLGKT+Q+IA+ + +W P
Sbjct: 512 PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPF 571
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
LI++P+S +W Q++ P VL G + + K + F+
Sbjct: 572 LIISPASTLNNWH---QEFSRFVPK--FKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFH 626
Query: 280 II--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
++ SY +V++ ++ ++ DE+ LK++ + R L + + LLL+GTP
Sbjct: 627 VVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQF--QCRNRLLLTGTP 684
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKAT 392
+ EL+ L + P ++ + HE N + + + S +E LH ++K
Sbjct: 685 IQNTMAELWALLHFIMPTLFDS-HEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKP- 742
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY-ALFRELEVVKGKIKACKSEEEVQS 451
M+RR+KKDV +L K + + + R +Y AL ++ + + S ++ S
Sbjct: 743 FMLRRIKKDVENELSDKIEILTYCQLTSRQ-RLLYQALKNKISIEDLLQSSMGSAQQAHS 801
Query: 452 LKFTEKNLI 460
+ NL+
Sbjct: 802 TTSSLMNLV 810
Score = 41 (19.5 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
MI++ K + QL +RR+ V+L +A+K++ + +
Sbjct: 263 MIKK-KHLTIEQLNARRRK-VWLTIAKKEIPKAF 294
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 611 LENLGQVLDGHENSLEVSSSQIRSSPAKQKTLD-SFLKRCNNVDDSEHQQ 659
L+N + D ++S+ S+ Q S+ + L F K CN+ D E Q+
Sbjct: 779 LKNKISIEDLLQSSMG-SAQQAHSTTSSLMNLVMQFRKVCNHPDLFERQE 827
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 369 (135.0 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 137/484 (28%), Positives = 240/484 (49%)
Query: 167 PAHIESKLLPFQRDGVRFAL-----QHGGRILLADEMGLGKTIQAIAVATCFRDV----- 216
P ++++L P+Q+ G+ + Q GG +LAD+MGLGKTIQ +A + +
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKEYQLGG--ILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Query: 217 --WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P LI+ P+SL +WA ++ PS + L+ + G+ R +++ ++ ++
Sbjct: 683 PHLPSLIICPTSLVGNWA---KEAAKFAPS---LTLAVIHGAQRG--PLLARLSEFDVV- 733
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ +Y ++++ + + F+ ++ DE+ +KNAQAK + + ++ + L L+
Sbjct: 734 -----VTTYPLMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKAL--QSPFKLCLT 786
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL ++ P + Y N+ + + Y G S ++ + A +
Sbjct: 787 GTPLENHLGELKSLMDFCLPGLLGTT-AYFNKEFRNRIER-Y-GDSEQVKVLSQRIAPFV 843
Query: 395 IRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQS--L 452
+RR K +V+ +LP K L++ EKD R +Y R L + K KI+ + + V +
Sbjct: 844 LRRTKAEVVTELPPKTEIYQSLEL-EKDQRNLYESIR-LSMEK-KIRELFATQGVAGSHI 900
Query: 453 KFTEKNL-INKIYTDSAEAKIP--------AVLDYLET----VIEAGCKFLIFAHHQPML 499
+F + L + + D K+ A L++L +++ G K LIF+ ML
Sbjct: 901 EFLDALLKLRQACCDPRLVKLEQAQKVKNNAKLNWLSQNLPEMVQEGRKILIFSQFTSML 960
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559
I +L ++ ++ G T RQ + +FQE D ++S+KAGG GL LTAA T
Sbjct: 961 ILIEELLQSLEIDYSKLTGQT--RLRQVQIDKFQE-GDTPVFLISLKAGGTGLNLTAADT 1017
Query: 560 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 619
VI + W P QA DRAHRIGQ + V VY L+A TV++ + ++ + K +L+
Sbjct: 1018 VIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILE 1077
Query: 620 GHEN 623
G N
Sbjct: 1078 GKGN 1081
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 369 (135.0 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 137/484 (28%), Positives = 240/484 (49%)
Query: 167 PAHIESKLLPFQRDGVRFAL-----QHGGRILLADEMGLGKTIQAIAVATCFRDV----- 216
P ++++L P+Q+ G+ + Q GG +LAD+MGLGKTIQ +A + +
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKEYQLGG--ILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Query: 217 --WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPL 274
P LI+ P+SL +WA ++ PS + L+ + G+ R +++ ++ ++
Sbjct: 683 PHLPSLIICPTSLVGNWA---KEAAKFAPS---LTLAVIHGAQRG--PLLARLSEFDVV- 733
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ +Y ++++ + + F+ ++ DE+ +KNAQAK + + ++ + L L+
Sbjct: 734 -----VTTYPLMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKAL--QSPFKLCLT 786
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL ++ P + Y N+ + + Y G S ++ + A +
Sbjct: 787 GTPLENHLGELKSLMDFCLPGLLGTT-AYFNKEFRNRIER-Y-GDSEQVKVLSQRIAPFV 843
Query: 395 IRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQS--L 452
+RR K +V+ +LP K L++ EKD R +Y R L + K KI+ + + V +
Sbjct: 844 LRRTKAEVVTELPPKTEIYQSLEL-EKDQRNLYESIR-LSMEK-KIRELFATQGVAGSHI 900
Query: 453 KFTEKNL-INKIYTDSAEAKIP--------AVLDYLET----VIEAGCKFLIFAHHQPML 499
+F + L + + D K+ A L++L +++ G K LIF+ ML
Sbjct: 901 EFLDALLKLRQACCDPRLVKLEQAQKVKNNAKLNWLSQNLPEMVQEGRKILIFSQFTSML 960
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559
I +L ++ ++ G T RQ + +FQE D ++S+KAGG GL LTAA T
Sbjct: 961 ILIEELLQSLEIDYSKLTGQT--RLRQVQIDKFQE-GDTPVFLISLKAGGTGLNLTAADT 1017
Query: 560 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 619
VI + W P QA DRAHRIGQ + V VY L+A TV++ + ++ + K +L+
Sbjct: 1018 VIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILE 1077
Query: 620 GHEN 623
G N
Sbjct: 1078 GKGN 1081
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 224 (83.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 84/302 (27%), Positives = 143/302 (47%)
Query: 174 LLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLILTPSS 226
L P+Q G+ + + + + +LADEMGLGKTIQ I++ T +V P L++ P S
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+W +W PS ++ + R V ++ G FN++ +Y+
Sbjct: 593 TLSNWQNEFAKWA---PSVTTIIYKGTKDARRR----VEGQIRK-----GAFNVLMTTYE 640
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
V+K + +L +K +I DE H LKN K T L AQ+ LLL+GTP ++ E
Sbjct: 641 YVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLM-LNGFFHAQHRLLLTGTPLQNKLPE 699
Query: 345 LFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATVMIRR 397
L+ L L P ++ + + + + N EE LH +++ ++RR
Sbjct: 700 LWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRP-FLLRR 758
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEK 457
LKK+V +QLP K + D + ++++ ++R ++ KG + K +SL T
Sbjct: 759 LKKEVESQLPDKTEYVIKCD--QSALQKV--IYRHMQ--KGLLLDAKMSSGARSLMNTVV 812
Query: 458 NL 459
+L
Sbjct: 813 HL 814
Score = 205 (77.2 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 57/188 (30%), Positives = 97/188 (51%)
Query: 475 VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + ++A G + L+F M++ ++ +R+DG T P R L+T+F
Sbjct: 854 LLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFN 913
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D+ +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ V V
Sbjct: 914 APNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLR 973
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNV 652
L+ ++V++ + R KL +D E ++ RS+ A++K + L++
Sbjct: 974 LITANSVEEKILAAARYKLN-----VD--EKVIQAGKFDQRSTGAERKQM---LEQIIQA 1023
Query: 653 DDSEHQQK 660
D E +++
Sbjct: 1024 DGEEEEEE 1031
Score = 43 (20.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 413 QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKI 472
+ LD +KD R +Y L + E V + + + K E I K EA++
Sbjct: 351 RALLD-EKKDQRLVYLLQQTDEYVDSLCSLVRQHQNTEKKKKKEDKKIEKGNQMDEEARV 409
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 269 (99.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 64/193 (33%), Positives = 112/193 (58%)
Query: 421 KDMRQIYALFRELEVVKG-KI-KACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478
K+ + Y ++ ++EV+ ++ + C+S +QS +T K+ + DS KI + +
Sbjct: 881 KNANEQY-IYEDMEVMSDFELHRLCRSFPTLQS--YTLKD---DPWMDSG--KIRVLKEL 932
Query: 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDV 538
L + E G + L+F+ MLD + Q+ K+ +R+DG T RQ ++ +F +++DV
Sbjct: 933 LPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDV 992
Query: 539 KAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598
+LS KAGG G+ L A+ VI + S+ P D +QAEDRAHR+GQV V V L+ ++T
Sbjct: 993 TVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNT 1052
Query: 599 VDDIVWDVVRSKL 611
+++ + + +KL
Sbjct: 1053 IEEYIQKLANTKL 1065
Score = 155 (59.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 74/318 (23%), Positives = 140/318 (44%)
Query: 131 EISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFA-LQHG 189
E+S + I ++ + A ++ + E+ + + ++ K +Q GV + L +
Sbjct: 509 EMSNGELNIVDMESVPTEAADNSDFPKFVTEQPKTLASDVQLK--SYQLVGVNWLHLLYQ 566
Query: 190 GRI--LLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPS 244
++ +LADEMGLGKT Q +A + P L++ PSS +W +++ PS
Sbjct: 567 QKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENW---LRELARFCPS 623
Query: 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ---NILMSSNFKIV 301
+ + GS + I + + I D L + +Y + + + L NF +
Sbjct: 624 ---LRVEPYYGSQQERANIREAIEENEIKYDIL--VTTYQLATNNKEDRSFLKHQNFDVC 678
Query: 302 IADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVH 361
+ DE H+LKN ++R + + A + LLL+GTP + EL L + P+++ +
Sbjct: 679 VYDEGHYLKNRMSERYKHLMNL--NANFRLLLTGTPLQNNLKELVSLLAFILPNMFDSDM 736
Query: 362 EYGNRYCKGGVFG---IYQGASNHEELHNL--MKATVMIRRLKKDVLAQLPVKRRQQVFL 416
+ + K I Q + + + M ++RR K VL LP K +
Sbjct: 737 DDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHC 796
Query: 417 DVAEKDMRQIYALFRELE 434
++E + +IY + L+
Sbjct: 797 KLSENQL-EIYNRYAALQ 813
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 276 (102.2 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 99/400 (24%), Positives = 194/400 (48%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 173 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 232
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
++ P ++L P S +W ++W +P ++ + R+ F R+
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRW--VPSLRVICFVGDKDA--RAAFI-------RDEM 281
Query: 274 LDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331
+ G +++ SY++V+K +++ +++ ++ DE+H +KN ++K + K+ L
Sbjct: 282 MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDF--KSTNRL 339
Query: 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKA 391
LL+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 340 LLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTKNCLGDQKLV---ERLHTVLKP 396
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKSEEEV 449
++RR+K DV LP K+ +++L ++ K R+ Y L ++++V+ K K +
Sbjct: 397 -FLLRRIKTDVEKSLPPKKEIKIYLGLS-KMQREWYTKILMKDIDVLNSAGKMDKMR--L 452
Query: 450 QSLKFTEKNLINKIYT-DSAEAKIP--------------AVLDYLETVI-EAGCKFLIFA 493
++ + N Y D AE P VLD L + E G + LIF+
Sbjct: 453 LNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFS 512
Query: 494 HHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + + + R+DG TP R+ ++ +F+
Sbjct: 513 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDFK 552
Score = 145 (56.1 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 31/90 (34%), Positives = 56/90 (62%)
Query: 542 VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 601
+LS +AGG+G+ L +A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++
Sbjct: 579 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 638
Query: 602 IVWD--VVRSKLENL----GQVLDGHENSL 625
+ + ++ +L+++ G+++D N +
Sbjct: 639 RIVERAEIKLRLDSIVIQQGRLIDQQSNKM 668
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 224 (83.9 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 50/133 (37%), Positives = 71/133 (53%)
Query: 490 LIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546
L+F + MLD + L+K V +R+DG RQ +V F +L+
Sbjct: 1689 LVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTS 1748
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
GG+GL LT A TVIF E W P IQA DRAHRIGQ VNVY L+ T+++ + ++
Sbjct: 1749 VGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNL 1808
Query: 607 VRSKLENLGQVLD 619
R K++ V++
Sbjct: 1809 QRFKIDVASTVVN 1821
Score = 216 (81.1 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 99/376 (26%), Positives = 173/376 (46%)
Query: 165 QIPAHIESKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAV--------ATCF 213
++P I+++L P+Q++GV F ++ +L D+MGLGKT+Q I + A F
Sbjct: 1309 KLPVAIKAELRPYQQEGVNWLAFLNRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEDF 1368
Query: 214 --------RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265
R V P LI+ P SL HW ++Q+ P V + + RS +
Sbjct: 1369 AKTQRPESRKV-PSLIICPPSLSGHWQQEVKQYA--PFLNCVAYVGP--PAERS--KLQG 1421
Query: 266 SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325
S +I + SYD+ ++L ++ + DE H +KN +AK T A I
Sbjct: 1422 SLADADIV------VTSYDICRNDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKRI-- 1473
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE- 384
+ + L+LSGTP + +EL+ + L P + +R+ K + +S +E
Sbjct: 1474 NSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSKEQEA 1533
Query: 385 ----LHNLMKATV--MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF--RELEVV 436
+ L K + ++RRLK++VL LP K Q + D +E ++++ F +E + +
Sbjct: 1534 GALAIEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQ-KKLFEDFTKKEQKAL 1592
Query: 437 KGKIKAC-KSEEE--VQSLKFTEKNLINK--IYTDSAEAKIPAVLDYLETVIEAGCKFLI 491
+ K+ + K+++E Q+L++ + L N + + V YL+ E +L
Sbjct: 1593 QEKMGSSEKADKEHIFQALQYMRR-LCNSPALVVKEGHKQYNEVQQYLQ---EKK-SYLR 1647
Query: 492 FAHHQPMLDAIHQLFL 507
H P L A+ L L
Sbjct: 1648 DVSHAPKLSALKDLLL 1663
Score = 39 (18.8 bits), Expect = 5.8e-12, Sum P(3) = 5.8e-12
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 390 KATVMIRRLKKDVLAQLPVK 409
+A +M RR KD L QL VK
Sbjct: 1073 EARIM-RRGAKDALEQLAVK 1091
Score = 38 (18.4 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 611 LENLGQVLDGHENSLEVSSSQIR----SSPAKQKTLDSFLKRCNNV-DDSEHQQK 660
L NLG+ + E E+ ++ K+K +L + DD ++Q++
Sbjct: 1838 LFNLGETAENAEKPTEIGGKEVDMVDIDGELKEKGKKGWLDDLGELWDDRQYQEE 1892
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 229 (85.7 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 61/186 (32%), Positives = 98/186 (52%)
Query: 429 LFRELEVVKG-KIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-G 486
+F EL V+ ++ ++ E +K + NLI DS + LD L ++A G
Sbjct: 617 IFEELAVMSDFQVYQMMNKHEFYDVKIPD-NLI----CDSGKF---LYLDTLLPKLKAEG 668
Query: 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546
+ L+F+ MLD + + +K R+DG T RQ L+T+F D + +LS K
Sbjct: 669 HRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTK 728
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGGVG+ LTAA T + ++ + P + QAEDR HR+GQ V +Y L++ T+++ +
Sbjct: 729 AGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMA 788
Query: 607 VRSKLE 612
KL+
Sbjct: 789 AEEKLK 794
Score = 189 (71.6 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 99/373 (26%), Positives = 170/373 (45%)
Query: 104 PKATWN-AKERLWTFPVP--FLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLR 160
P + W+ +++L + + L+ A++++++ + + + +V R + S +
Sbjct: 218 PFSDWSDLRQKLESIRMSGDLLNYAQELINKQNTVAAILSKCNNMVSRLEKAISNGAGIV 277
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVATCFRDVW 217
E+ + + ++ L +Q G+ + + H + +LADEMGLGKTIQ IA ++
Sbjct: 278 EQPKLLSSGLQ--LADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENG 335
Query: 218 ----PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
LI+ PSS +W A I +W P E+VV + GS +
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWC---P-ELVV--EKYHGSQDE-----RRRMRGRFA 384
Query: 274 LDGLFNIISYDVVLKLQNILMSSN-----FKI-----VIADESHFLKNAQAKRTAATLPI 323
DG +DV+L +I+ S+ F++ VI DE+H LKN +R A + I
Sbjct: 385 KDGF---TGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITI 441
Query: 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVY-KNVHEYGNRYCKGGVF-GIYQGASN 381
A+ +LL+GTP + +EL L + P + K++ + + + K G G S
Sbjct: 442 --NARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQ 499
Query: 382 HEELH-----NLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE-- 434
+E +MK V+ RRLKKDVL LP ++ + V ++IY + EL
Sbjct: 500 FQETQIQRAKRIMKPFVL-RRLKKDVLKNLP--KKLSLVEKVPMSSQQKIY--YHELVDY 554
Query: 435 VVKGKIKACKSEE 447
K + C S E
Sbjct: 555 YSNNKGEVCSSSE 567
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 220 (82.5 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 84/309 (27%), Positives = 150/309 (48%)
Query: 122 LSSAEKVL-SEI--SGYNVEIEN-LHPLVQRAIASASAAPDLREKYDQIPAH-IESKLLP 176
L++A KV S+ S Y+ +++ ++P R I + A ++RE + P+ + KL
Sbjct: 360 LAAAVKVQQSQFGESAYDEDMDRRMNPEDDRKIDYYNVAHNIREVVTEQPSILVGGKLKE 419
Query: 177 FQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRL 229
+Q G+++ + + + +LADEMGLGKTIQ I++ T R P L++ P S
Sbjct: 420 YQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLT 479
Query: 230 HWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKL 289
+W ++W PS + +V G + + N + + +Y+ ++K
Sbjct: 480 NWTMEFERWA---PSIVKIVYK---GPPQVRKALHPQVRHSNFQV----LLTTYEYIIKD 529
Query: 290 QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQL 349
+ +L + +I DE H +KN Q+K T TL ++Y L+L+GTP + EL+ L
Sbjct: 530 RPLLSRIKWIYMIIDEGHRMKNTQSKLTN-TLTTYYSSRYRLILTGTPLQNNLPELWALL 588
Query: 350 EALYPDVYKNVHEYGNRYCK--GGVFGIYQGASNHEE-------LHNLMKATVMIRRLKK 400
+ P ++ ++ + + G + EE LH +++ ++RRLKK
Sbjct: 589 NFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRP-FLLRRLKK 647
Query: 401 DVLAQLPVK 409
DV A+LP K
Sbjct: 648 DVEAELPDK 656
Score = 202 (76.2 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 53/190 (27%), Positives = 98/190 (51%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + +G + L+F +++ + ++ +R+DG T R L+ F
Sbjct: 740 LLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFN 799
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ +V +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ V +Y
Sbjct: 800 DPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYR 859
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT-LDSFLKRCNN 651
L+ +V++ + + KL+ +DG ++ +S+P +++ L S L+ N
Sbjct: 860 LITEKSVEENILARAQYKLD-----IDG--KVIQAGKFDNKSTPEEREAFLRSLLENENG 912
Query: 652 VDDSEHQQKL 661
++++ + +L
Sbjct: 913 EEENDEKGEL 922
Score = 41 (19.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 419 AEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL-- 476
A+K R + A +E + + +++ +Q+LK ++ K+ + + +I +L
Sbjct: 293 AQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKENDEEAYLKLIDQAKDTRITHLLRQ 352
Query: 477 --DYLETVIEA 485
YL+++ A
Sbjct: 353 TDHYLDSLAAA 363
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 210 (79.0 bits), Expect = 9.7e-30, Sum P(2) = 9.7e-30
Identities = 91/335 (27%), Positives = 151/335 (45%)
Query: 165 QIPAHIESKLLP-FQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-W 217
Q P H ++ +Q +G+ R ++G +LADEMGLGKT+Q IA R V
Sbjct: 196 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 255
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P L+ P S +W A +++ P EI +L G+ +V + KR L +
Sbjct: 256 PFLVCGPLSTLPNWMAEFKRFT---P-EIPTLLYH--GTREDRRKLVKNIHKRQGTLQ-I 308
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
++ S+++ ++ QN L +K +I DE H +KN + R L A LLL+G
Sbjct: 309 HPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKC-RLIRELKRFN-ADNKLLLTG 366
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKA 391
TP + EL+ L L PDV+ ++ + + + + + A E+ LH L +
Sbjct: 367 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 426
Query: 392 TV--MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEV 449
++RRLK DV ++P KR V+ + K ++I+ + +C+ E
Sbjct: 427 LTPFLLRRLKSDVALEVPPKREVVVYAPLCNK--QEIFYTAIVNRTIANMFGSCEKETVE 484
Query: 450 QSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484
S K K S + P+ L+ L + I+
Sbjct: 485 LSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQ 519
Score = 206 (77.6 bits), Expect = 9.7e-30, Sum P(2) = 9.7e-30
Identities = 54/164 (32%), Positives = 84/164 (51%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + + G K L+F+ MLD + + R+DG + R+ + F
Sbjct: 586 ILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFN 645
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
DV ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L
Sbjct: 646 TDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 705
Query: 594 LANDTVDDIVWD--VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D + + + KLE L ++ H+N + S + S
Sbjct: 706 VTANTIDQKIVERAAAKRKLEKL--II--HKNHFKGGQSGLSQS 745
Score = 46 (21.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILM 294
PSE+ ++SQ+ T+V N IP++ +V LKL+NI+M
Sbjct: 508 PSELEKLISQIQPEVNRERTVVEGN----IPIES-------EVNLKLRNIMM 548
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 234 (87.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 92/300 (30%), Positives = 144/300 (48%)
Query: 193 LLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVV 248
+LADEMGLGKTIQ IA+ T R P LI+ P S +WA +W PS VV
Sbjct: 28 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VV 82
Query: 249 VLSQLGG-SNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESH 307
+S G + R F + K N+ L +Y+ ++K ++IL +K +I DE H
Sbjct: 83 KVSYKGSPAARRAFVPQLRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGH 136
Query: 308 FLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRY 367
+KN K T L A LLL+GTP ++ EL+ L L P ++K+ + +
Sbjct: 137 RMKNHHCKLTQV-LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF 195
Query: 368 CKGGVFGIYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAE 420
+ N EE LH +++ ++RRLKK+V AQLP K + D++
Sbjct: 196 NAPFAMTGEKVDLNEEETILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA 254
Query: 421 KDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
++++ L+R ++ KG + SE++ + K K L+N I P + ++E
Sbjct: 255 --LQRV--LYRHMQA-KGVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 308
Score = 180 (68.4 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 350 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 409
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 410 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 469
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 470 AKYKL-NVDQ 478
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 257 (95.5 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 63/188 (33%), Positives = 101/188 (53%)
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIF 492
E+V + CK S+ +K + TD+ + VLD L T ++A G + LI+
Sbjct: 1125 ELVSSGLALCKPHGGWSSIVVPDKETL---ITDAGKL---FVLDNLLTRLKANGHRVLIY 1178
Query: 493 AHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGL 552
+ M+D + + +K +R+DG + ++R+ +V +FQ + D+ +LS +AGG+G+
Sbjct: 1179 SQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGI 1238
Query: 553 TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
LTAA TVIF + W P QA DRAHR+GQ V VY L+ T+++ + R K E
Sbjct: 1239 NLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSE 1298
Query: 613 NLGQVLDG 620
V+ G
Sbjct: 1299 IQRMVISG 1306
Score = 173 (66.0 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 64/254 (25%), Positives = 119/254 (46%)
Query: 193 LLADEMGLGKTIQAIAVATCFRD---VW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVV 248
+LADEMGLGKT+Q+IA + VW P L+++P+S +W + ++ +P ++V
Sbjct: 557 ILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRF--VPDFKVV- 613
Query: 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADES 306
G + K D F+++ SY +V+ ++ ++ DE+
Sbjct: 614 --PYWGSPAERKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEA 671
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
+K+A ++R L + LLLSGTP + EL+ L + P ++ + H+ N
Sbjct: 672 QAIKSAASQRWKLLLGF--SCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDS-HDEFNE 728
Query: 367 YCKGGVFGIYQGASNHEE-----LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEK 421
+ + + + +E LH ++K M+RR+KKDV +L K V+ + +
Sbjct: 729 WFSKDIESHAENKTGIDEKQISRLHMILKP-FMLRRIKKDVENELSDKIEIMVYCPLTIR 787
Query: 422 DMRQIYALFRELEV 435
AL +++ +
Sbjct: 788 QKLLYRALKQKIRI 801
Score = 38 (18.4 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2 EVDDEWEFSAEELDFLEREALQQ 24
EVD + E ++ LD+ E E +++
Sbjct: 259 EVDYKRELASLALDYPEEEEIEE 281
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 235 (87.8 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 66 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 125
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 126 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 180
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 181 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 233
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 234 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 293
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 294 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 347
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 348 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 389
Score = 180 (68.4 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 431 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 490
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 491 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 550
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 551 AKYKL-NVDQ 559
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 208 (78.3 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 54/164 (32%), Positives = 86/164 (52%)
Query: 475 VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + ++A G K L+F+ MLD + + + R+DG + R+ + F
Sbjct: 604 ILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFN 663
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
DV ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L
Sbjct: 664 TDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 723
Query: 594 LANDTVDDIVWD--VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D + + + KLE L ++ H+N + S + S
Sbjct: 724 VTANTIDQKIVERAAAKRKLEKL--II--HKNHFKGGQSGLNQS 763
Score = 206 (77.6 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 79/272 (29%), Positives = 132/272 (48%)
Query: 165 QIPAHIESKLLP-FQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-W 217
Q P H ++ +Q +G+ R ++G +LADEMGLGKT+Q IA R V
Sbjct: 214 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 273
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P L+ P S +W A Q++ P +I +L G+ + +V + KR L +
Sbjct: 274 PFLVCGPLSTLPNWMAEFQRFT---P-DIPTMLYH--GTQQERRKLVKNIHKRKGTLQ-I 326
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
++ S+++ ++ +N L +K +I DE H +KN + R L A LLL+G
Sbjct: 327 HPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKC-RLIRELKRFN-ADNKLLLTG 384
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKA 391
TP + EL+ L L PDV+ ++ + + + + + A E+ LH L +
Sbjct: 385 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 444
Query: 392 TV--MIRRLKKDVLAQLPVKRRQQVFLDVAEK 421
++RRLK DV ++P KR V+ +++K
Sbjct: 445 LTPFLLRRLKSDVALEVPPKREVVVYAPLSKK 476
Score = 48 (22.0 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 196 DEMGLGKTIQAIAVATCFRDVWPVL--ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253
D L +T + I ++V +L ILTP LR + + L +PP VVV + L
Sbjct: 417 DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA---LEVPPKREVVVYAPL 473
Query: 254 GGSNRSGFTIVSSNTKRNI 272
+T + + T N+
Sbjct: 474 SKKQEIFYTAIVNRTIANM 492
Score = 40 (19.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 279 NI-ISYDVVLKLQNILM 294
NI + +V LKLQNI+M
Sbjct: 550 NIPVESEVNLKLQNIMM 566
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 231 (86.4 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 59/187 (31%), Positives = 94/187 (50%)
Query: 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK---VHCIRIDGGTPPASRQALVTEFQEKD 536
E V+ A + LIF + MLD + Q LK + V +R+DG R ++V+ F
Sbjct: 1649 EAVV-AQHRVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDP 1707
Query: 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596
+ +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+
Sbjct: 1708 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1767
Query: 597 DTVDDIVWDVVRSKLENLGQVLDGHENSLE-VSSSQIRSSPAKQKTLDSFLKRCNNVDDS 655
T+++ + + + K+ V+ SL+ + + Q+ + K D ++C+ S
Sbjct: 1768 GTLEEKIMGLQKFKMTIANTVISQENASLQSMGTEQLLNLFTLDK--DDKAEKCDGSSSS 1825
Query: 656 EHQQKLK 662
+ +K
Sbjct: 1826 SGKSSMK 1832
Score = 190 (71.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 83/322 (25%), Positives = 142/322 (44%)
Query: 161 EKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVA------- 210
E Y +IP I+++L +Q+DGV + A + ++ +L D+MGLGKT+Q+I +
Sbjct: 1264 ENY-KIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHFLR 1322
Query: 211 ------TCFRDVWPV--LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262
T D P+ +++ P +L HW + ++ + E + L G
Sbjct: 1323 AQEYTRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCS---KEFLNPLHYTGPPTERA-R 1378
Query: 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ K N+ + SYDVV F I DE H +KN + K + A
Sbjct: 1379 LQHQVKKHNLI------VASYDVVRNDVEFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQ 1432
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382
+ A Y L+LSGTP + +EL+ + L P ++ RY K + +S+
Sbjct: 1433 LT--ANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSR 1490
Query: 383 EELHNL--MKAT------VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE 434
E+ + M+A ++RR+K DVL LP K Q + +++ + Q+Y F +
Sbjct: 1491 EQEAGVLAMEALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQV-QLYEDFAKSR 1549
Query: 435 V---VKGKIKACKSEEEVQSLK 453
V I ++E+ + K
Sbjct: 1550 AKVNVDDVISTASTQEDEEKPK 1571
Score = 65 (27.9 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 33/137 (24%), Positives = 54/137 (39%)
Query: 383 EELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEV---VKGK 439
E LH + ++RR+K DVL LP K Q + +++ + Q+Y F + V
Sbjct: 1500 EALHRQV-LPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQV-QLYEDFAKSRAKVNVDDV 1557
Query: 440 IKACKSEEEVQSLK-------FTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKF--L 490
I ++E+ + K F + K+ A P +Y + + L
Sbjct: 1558 ISTASTQEDEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHITEQLSTQHSSL 1617
Query: 491 IFAHHQPMLDAIHQLFL 507
H P L A+ QL L
Sbjct: 1618 RDIQHAPKLSALKQLLL 1634
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 164 DQIPAHIESKLLPFQRDGVRFALQHGGRIL 193
D P + + L F R + L+HG +L
Sbjct: 90 DLSPEDVSTDRLSFYRFDISRLLKHGASLL 119
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 359 (131.4 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 144/513 (28%), Positives = 251/513 (48%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 476 PAYLGGENLELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQL 534
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 535 YGPFLIVVPLSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKF 591
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++
Sbjct: 592 NAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 647
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 648 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 704
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 705 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKC 763
Query: 443 CKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPML 499
C ++ + E+ +I + K+ +LD L T + E G + LIF+ ML
Sbjct: 764 CNHCYLIKPPEENERENGQEILLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRML 822
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAS 558
D + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 823 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 882
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG- 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 883 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 942
Query: 616 QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 943 QRMDTTGRTVLENNSGRSNSNPFNKEELTAILK 975
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 235 (87.8 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 725 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 784
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 785 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 839
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 840 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 892
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 893 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 952
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 953 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1006
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1007 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1048
Score = 184 (69.8 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 45/129 (34%), Positives = 68/129 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547
K L+F ++ + F + +R+DG T R L+T F E +LS +A
Sbjct: 1090 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPGSEYFILLSTRA 1148
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1149 GGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA 1208
Query: 608 RSKLENLGQ 616
+ KL N+ Q
Sbjct: 1209 KYKL-NVDQ 1216
Score = 48 (22.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 513 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 571
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 572 KKKKKKKK-KAENAEGQTPAI 591
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 226 (84.6 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 54/162 (33%), Positives = 85/162 (52%)
Query: 460 INKIYTDSAE-AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDG 518
+ + TDS + AK+ +L L+ G + L++ M+D + + + R+DG
Sbjct: 1313 MRRFVTDSGKLAKLDELLRELKA---GGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDG 1369
Query: 519 GTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDR 578
T R+ V +FQ++ D+ +LS +AGG+G+ LTAA TVIF + W P QA DR
Sbjct: 1370 STKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDR 1429
Query: 579 AHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620
AHR+GQ V VY L+ T+++ + K E V+ G
Sbjct: 1430 AHRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISG 1471
Score = 205 (77.2 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 80/308 (25%), Positives = 142/308 (46%)
Query: 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRDV---W-PV 219
P + +KL +Q G+ + + + G +LADEMGLGKTIQ+I+V +V W P
Sbjct: 791 PTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPF 850
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR-NIPLDGLF 278
L++ P+S +W I +++ P+ + VL G + + K + F
Sbjct: 851 LVIAPASTLHNWQQEITKFV---PN--IKVLPYWGNAKDRKILRKFWDRKHITYTKESEF 905
Query: 279 NII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+++ SY +V+ ++ +I DE+ +K++Q+ R + L + LLL+GT
Sbjct: 906 HVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGF--HCRNRLLLTGT 963
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE----LHNLMKAT 392
P + EL+ L + P ++ + E+ + K +E+ LH ++K
Sbjct: 964 PIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKP- 1022
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSL 452
M+RR+KK V +L K + VF D+ + R +Y R + I+ +E S
Sbjct: 1023 FMLRRVKKHVQQELGDKVEKDVFCDLTYRQ-RALYTNLRNRVSIMDLIEKAAVGDETDST 1081
Query: 453 KFTEKNLI 460
T NL+
Sbjct: 1082 --TLMNLV 1087
Score = 52 (23.4 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 412 QQVFLDVAEKDMRQIYAL-FRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDS-AE 469
+Q++ D+A KD+ ++Y L + ++ QS K+ E+ NK D+ A
Sbjct: 568 EQIWRDIARKDIPKVYRTKVNSLSTRQENLRKTAQLASKQSRKWQERT--NKSMKDTQAR 625
Query: 470 AK 471
AK
Sbjct: 626 AK 627
Score = 39 (18.8 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 419 AEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456
A++ MR++ + ++ E + ++ ++E++S K E
Sbjct: 626 AKRTMREMMSFWKRNEREERDLRRLAEKQELESAKRAE 663
Score = 37 (18.1 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 125 AEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKY 163
+EK ++ Y VEI+N +++ A RE+Y
Sbjct: 290 SEKETEMVNKYMVEIDN----AEKSDVEAPGFEQERERY 324
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 360 (131.8 bits), Expect = 2.6e-29, P = 2.6e-29
Identities = 127/476 (26%), Positives = 233/476 (48%)
Query: 167 PAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDVWPV---- 219
P +I + P+Q +G+ + Q + +I +LADEMGLGKT+Q I++ R +
Sbjct: 315 PMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIKKKS 374
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
+I+ P S +W I++W P + G ++ RN+ L F+
Sbjct: 375 IIICPRSTLDNWYEEIKKWCT--PMK---AFKYYGNKDQR------KELNRNL-LHSDFD 422
Query: 280 II--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
++ +Y++V+K ++ L ++ ++ DE+H +KN ++ +++ + +++ LL++GTP
Sbjct: 423 VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFL--RSENRLLITGTP 480
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH-EELHNLMKATVMIR 396
+ EL+ L L P ++ N E+ N + + S +LH ++K M+R
Sbjct: 481 LHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKP-FMLR 539
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVV------KGKI-------- 440
RLK +V LP KR +F+ ++ K +++Y+ L + ++V+ K ++
Sbjct: 540 RLKVEVEQSLPPKREIYIFVGMS-KLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLR 598
Query: 441 KACKSE---EEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQP 497
K C + ++ + E N + I T + + +L L+ + + L+F+
Sbjct: 599 KCCNHPYLFDGIEEPPYIEGNHL--IETSGKMSLLDKLLPRLK---KENSRVLLFSQMTR 653
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
+LD I K +RIDG TP RQ + +F E + +LS +AGG+G+ LT
Sbjct: 654 LLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTT 713
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
A VI + + P IQA DRAHRIGQ V VY + ++V++ + + KL+
Sbjct: 714 ADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLK 769
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 360 (131.8 bits), Expect = 2.6e-29, P = 2.6e-29
Identities = 127/476 (26%), Positives = 233/476 (48%)
Query: 167 PAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDVWPV---- 219
P +I + P+Q +G+ + Q + +I +LADEMGLGKT+Q I++ R +
Sbjct: 315 PMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIKKKS 374
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
+I+ P S +W I++W P + G ++ RN+ L F+
Sbjct: 375 IIICPRSTLDNWYEEIKKWCT--PMK---AFKYYGNKDQR------KELNRNL-LHSDFD 422
Query: 280 II--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
++ +Y++V+K ++ L ++ ++ DE+H +KN ++ +++ + +++ LL++GTP
Sbjct: 423 VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFL--RSENRLLITGTP 480
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH-EELHNLMKATVMIR 396
+ EL+ L L P ++ N E+ N + + S +LH ++K M+R
Sbjct: 481 LHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKP-FMLR 539
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVV------KGKI-------- 440
RLK +V LP KR +F+ ++ K +++Y+ L + ++V+ K ++
Sbjct: 540 RLKVEVEQSLPPKREIYIFVGMS-KLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLR 598
Query: 441 KACKSE---EEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQP 497
K C + ++ + E N + I T + + +L L+ + + L+F+
Sbjct: 599 KCCNHPYLFDGIEEPPYIEGNHL--IETSGKMSLLDKLLPRLK---KENSRVLLFSQMTR 653
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
+LD I K +RIDG TP RQ + +F E + +LS +AGG+G+ LT
Sbjct: 654 LLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTT 713
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
A VI + + P IQA DRAHRIGQ V VY + ++V++ + + KL+
Sbjct: 714 ADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLK 769
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 235 (87.8 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 532 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 591
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 592 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 646
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 647 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 699
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 700 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 759
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 760 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 813
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 814 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 855
Score = 180 (68.4 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 897 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 956
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 957 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1016
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1017 AKYKL-NVDQ 1025
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 320 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 378
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 379 KKKKKKKK-KAENAEGQTPAI 398
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 213 (80.0 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 45/135 (33%), Positives = 74/135 (54%)
Query: 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVL 543
+G + L+F ++D + K + +R+DG T R ++ F D D +L
Sbjct: 806 SGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLL 865
Query: 544 SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIV 603
S +AGG+GL L A TVI + W P +QA+DRAHRIGQ + V + L+ D+V++++
Sbjct: 866 STRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVI 925
Query: 604 WDVVRSKLENLGQVL 618
+ KL+ G+V+
Sbjct: 926 LERAMQKLDIDGKVI 940
Score = 203 (76.5 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 71/270 (26%), Positives = 136/270 (50%)
Query: 159 LREKYDQIPAH-IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCF- 213
++EK D+ P+ + L +Q G+ + + + + +LADEMGLGKTIQ+I++ T
Sbjct: 454 IKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLY 513
Query: 214 ---RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270
+D+ P L++ P S +W ++W PS ++ G N+ + +
Sbjct: 514 EVKKDIGPFLVIVPLSTITNWTLEFEKWA---PSLNTIIYK--GTPNQR------HSLQH 562
Query: 271 NIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
I + G F+++ +Y+ ++K +++L ++ +I DE H +KNAQ+K + T+ + +
Sbjct: 563 QIRV-GNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSK-LSFTISHYYRTR 620
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRY-CKGGVFGIYQGASNHEE--- 384
L+L+GTP + EL+ L + P ++ + + + + G + EE
Sbjct: 621 NRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETL 680
Query: 385 -----LHNLMKATVMIRRLKKDVLAQLPVK 409
LH +++ ++RRLKK+V LP K
Sbjct: 681 LIIRRLHKVLRP-FLLRRLKKEVEKDLPDK 709
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 356 (130.4 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 125/485 (25%), Positives = 225/485 (46%)
Query: 167 PAHI-ESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WP 218
P++I E KL +Q G+ + + + R+ +LADEMGLGKT+Q I+ R + P
Sbjct: 131 PSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGP 190
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
+++ P S +W +W P VVVL G +I+ D L
Sbjct: 191 FIVIVPKSTLDNWRREFAKWT---PDVNVVVLQ---GDKEQRASIIKDQLY-TAKFDVL- 242
Query: 279 NIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338
I S++++L+ ++ L ++ ++ DE+H +KN + + + + + ++ LL++GTP
Sbjct: 243 -ITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDS--SLSKIIRLFYSRNRLLITGTPL 299
Query: 339 LSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE------ELHNLMKAT 392
+ EL+ L L PDV+ + ++ + + + ELH L+ +
Sbjct: 300 QNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL-SP 358
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF-RELEVVKGKIKACKSEEEVQS 451
++RR+K DV L K V++ + + + L ++++ V G + + + + +
Sbjct: 359 FLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLN 418
Query: 452 LKFTEKNLINKIYT-DSAEAKIPAVLD----Y-------LETVIEA----GCKFLIFAHH 495
+ + N Y D AE P D Y L+ +++ G + LIF+
Sbjct: 419 IVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQM 478
Query: 496 QPMLDAIHQL-FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLT 553
+LD + + + +C RIDG T R + E+ D K +L+ +AGG+G+
Sbjct: 479 SRVLDILEDYCYFRDYEYC-RIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGIN 537
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLEN 613
LT+A VI + W P +QA DRAHRIGQ V V+ + +++ V + KL
Sbjct: 538 LTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLR- 596
Query: 614 LGQVL 618
L Q++
Sbjct: 597 LDQLV 601
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 356 (130.4 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 125/485 (25%), Positives = 225/485 (46%)
Query: 167 PAHI-ESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WP 218
P++I E KL +Q G+ + + + R+ +LADEMGLGKT+Q I+ R + P
Sbjct: 131 PSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGP 190
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
+++ P S +W +W P VVVL G +I+ D L
Sbjct: 191 FIVIVPKSTLDNWRREFAKWT---PDVNVVVLQ---GDKEQRASIIKDQLY-TAKFDVL- 242
Query: 279 NIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338
I S++++L+ ++ L ++ ++ DE+H +KN + + + + + ++ LL++GTP
Sbjct: 243 -ITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDS--SLSKIIRLFYSRNRLLITGTPL 299
Query: 339 LSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE------ELHNLMKAT 392
+ EL+ L L PDV+ + ++ + + + ELH L+ +
Sbjct: 300 QNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL-SP 358
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF-RELEVVKGKIKACKSEEEVQS 451
++RR+K DV L K V++ + + + L ++++ V G + + + + +
Sbjct: 359 FLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLN 418
Query: 452 LKFTEKNLINKIYT-DSAEAKIPAVLD----Y-------LETVIEA----GCKFLIFAHH 495
+ + N Y D AE P D Y L+ +++ G + LIF+
Sbjct: 419 IVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQM 478
Query: 496 QPMLDAIHQL-FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLT 553
+LD + + + +C RIDG T R + E+ D K +L+ +AGG+G+
Sbjct: 479 SRVLDILEDYCYFRDYEYC-RIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGIN 537
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLEN 613
LT+A VI + W P +QA DRAHRIGQ V V+ + +++ V + KL
Sbjct: 538 LTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLR- 596
Query: 614 LGQVL 618
L Q++
Sbjct: 597 LDQLV 601
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 366 (133.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 135/480 (28%), Positives = 227/480 (47%)
Query: 166 IPAHIESKLLPFQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCFRD----VWP 218
+P + + L +Q G+ +F ++ +LAD+MGLGKTIQ +A + P
Sbjct: 654 VPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAHLLIEKQQGRLTKP 713
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
+LI+ P+S+ +WA I ++ P VL G F + +D +
Sbjct: 714 ILIVAPTSVIFNWANEIDKFT---PQLSYQVLH--GNKRHEQFGCLEGVENGENQVDII- 767
Query: 279 NIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338
I SY ++ K F ++ DE+H++KN + K A L + KAQ+ L L+GTP
Sbjct: 768 -ITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTL--KAQHKLCLTGTPM 824
Query: 339 LSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398
+ E + Q L P ++ + + + G ++L N ++RR
Sbjct: 825 ENHLGEFWAQFNFLLPGFLGGQRQFTKLF-RTPIEK--HGELERKQLLNQRIKPFILRRT 881
Query: 399 KKDVLAQLPVKRR--QQVFLDVAEKDMRQIYALF---RELEVVKGK-IKACKSEEEVQSL 452
K + +LP K Q + ++ + ++ + L R +++ K +K +S+ EV
Sbjct: 882 KDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLK--RSQIEVLDA 939
Query: 453 KFTEKNLIN--KIYTDSAEAKI--PAVLDYL-ETV---IEAGCKFLIFAHHQPMLDAIHQ 504
+ + N K+ K+ A LDYL ET+ I+ G K LIF+ ML I
Sbjct: 940 LLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIED 999
Query: 505 LFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564
+ + +++ G T RQ +V +FQ + +V ++S++AGGVGL LTAA TVI +
Sbjct: 1000 ELIDAGIGYVKLTGST--TKRQEVVDKFQ-RGEVPVFLISLRAGGVGLNLTAADTVIHFD 1056
Query: 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W P QA DRA+RIGQ V VY L+ +++++ + + ++K E L + L E S
Sbjct: 1057 PWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAE-LAKALLSEEVS 1115
Score = 38 (18.4 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 94 PVLVSAFRKIPKATWNAKER 113
P+L+SA ++P++ +E+
Sbjct: 541 PILLSAIEQLPRSALLDREK 560
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 366 (133.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 135/480 (28%), Positives = 227/480 (47%)
Query: 166 IPAHIESKLLPFQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCFRD----VWP 218
+P + + L +Q G+ +F ++ +LAD+MGLGKTIQ +A + P
Sbjct: 654 VPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAHLLIEKQQGRLTKP 713
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
+LI+ P+S+ +WA I ++ P VL G F + +D +
Sbjct: 714 ILIVAPTSVIFNWANEIDKFT---PQLSYQVLH--GNKRHEQFGCLEGVENGENQVDII- 767
Query: 279 NIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338
I SY ++ K F ++ DE+H++KN + K A L + KAQ+ L L+GTP
Sbjct: 768 -ITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTL--KAQHKLCLTGTPM 824
Query: 339 LSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398
+ E + Q L P ++ + + + G ++L N ++RR
Sbjct: 825 ENHLGEFWAQFNFLLPGFLGGQRQFTKLF-RTPIEK--HGELERKQLLNQRIKPFILRRT 881
Query: 399 KKDVLAQLPVKRR--QQVFLDVAEKDMRQIYALF---RELEVVKGK-IKACKSEEEVQSL 452
K + +LP K Q + ++ + ++ + L R +++ K +K +S+ EV
Sbjct: 882 KDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLK--RSQIEVLDA 939
Query: 453 KFTEKNLIN--KIYTDSAEAKI--PAVLDYL-ETV---IEAGCKFLIFAHHQPMLDAIHQ 504
+ + N K+ K+ A LDYL ET+ I+ G K LIF+ ML I
Sbjct: 940 LLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIED 999
Query: 505 LFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564
+ + +++ G T RQ +V +FQ + +V ++S++AGGVGL LTAA TVI +
Sbjct: 1000 ELIDAGIGYVKLTGST--TKRQEVVDKFQ-RGEVPVFLISLRAGGVGLNLTAADTVIHFD 1056
Query: 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W P QA DRA+RIGQ V VY L+ +++++ + + ++K E L + L E S
Sbjct: 1057 PWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAE-LAKALLSEEVS 1115
Score = 38 (18.4 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 94 PVLVSAFRKIPKATWNAKER 113
P+L+SA ++P++ +E+
Sbjct: 541 PILLSAIEQLPRSALLDREK 560
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 215 (80.7 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 81/272 (29%), Positives = 133/272 (48%)
Query: 165 QIPAHIESKLLP-FQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-W 217
Q P H ++ +Q +G+ R ++G +LADEMGLGKT+Q IA R V
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 272
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P L+ P S +W A Q++ P EI +L GS + +V+ KR L +
Sbjct: 273 PFLVCGPLSTLPNWMAEFQRFT---P-EIPTMLYH--GSQQERRKLVNHIHKRKGTLQ-I 325
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
++ S+++ ++ +N+L +K +I DE H +KN + R L A LLL+G
Sbjct: 326 HPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKC-RLIRELKRFN-ADNKLLLTG 383
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKA 391
TP + EL+ L L PDV+ ++ + + + + + A E+ LH L +
Sbjct: 384 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 443
Query: 392 TV--MIRRLKKDVLAQLPVKRRQQVFLDVAEK 421
++RRLK DV ++P KR V+ +++K
Sbjct: 444 LTPFLLRRLKSDVALEVPPKREVVVYAPLSKK 475
Score = 202 (76.2 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 51/152 (33%), Positives = 78/152 (51%)
Query: 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545
G K L+F+ MLD + + + R+DG R+ + F DV ++S
Sbjct: 615 GHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVST 674
Query: 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 605
+AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L+ +T+D + +
Sbjct: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
Query: 606 --VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ KLE L ++ H+N + S + S
Sbjct: 735 RAAAKRKLEKL--II--HKNHFKGGQSGLNQS 762
Score = 48 (22.0 bits), Expect = 8.0e-12, Sum P(4) = 8.0e-12
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 196 DEMGLGKTIQAIAVATCFRDVWPVL--ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253
D L +T + I ++V +L ILTP LR + + L +PP VVV + L
Sbjct: 416 DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA---LEVPPKREVVVYAPL 472
Query: 254 GGSNRSGFTIVSSNTKRNI 272
+T + + T N+
Sbjct: 473 SKKQEVFYTAIVNRTITNM 491
Score = 40 (19.1 bits), Expect = 8.0e-12, Sum P(4) = 8.0e-12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 279 NI-ISYDVVLKLQNILM 294
NI + +V LKLQNI+M
Sbjct: 549 NIPVESEVNLKLQNIMM 565
Score = 37 (18.1 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 144 PLVQRAIASASAAPDLREKYDQI---PAHIESK 173
P Q A + S APD+ E+ + PA +E +
Sbjct: 2 PAQQPASSGGSLAPDMVEQAETAVITPAMLEEE 34
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 235 (87.8 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 725 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 784
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 785 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 839
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 840 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 892
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 893 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 952
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 953 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1006
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1007 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1048
Score = 180 (68.4 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1090 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1149
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1150 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1209
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1210 AKYKL-NVDQ 1218
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 513 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 571
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 572 KKKKKKKK-KAENAEGQTPAI 591
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 235 (87.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 235 (87.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 235 (87.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 235 (87.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 235 (87.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 235 (87.8 bits), Expect = 6.2e-29, Sum P(2) = 6.2e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 6.2e-29, Sum P(2) = 6.2e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 366 (133.9 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 128/479 (26%), Positives = 232/479 (48%)
Query: 167 PAHIESKLL-PFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVA---TCFRDV-WP 218
P +I+S + +Q G+ + +Q G +LADEMGLGKT+Q I++ + ++ + P
Sbjct: 268 PPYIKSGTMRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGP 327
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P S WA +W P +V + GS + K+N + F
Sbjct: 328 HLIIAPKSTLSGWAKEFTRWC--PFLRVV----RFHGSKEE-----REDIKKNQLIFKKF 376
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I +Y+V ++ ++ +++ +I DE+H +KN + + +Q+ LL++GT
Sbjct: 377 DVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMF--NSQFRLLITGT 434
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE----LHNLMKAT 392
P + EL+ L L PDV+ + ++ +++ F + N +E LH +++
Sbjct: 435 PLQNNLHELWSLLNFLLPDVFSSSDDF-DKW-----FDLANNTENQQEVIDKLHKVLRP- 487
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKSEEEVQ 450
++RR+K +V LP K+ ++F+ ++ ++ Y L ++L+ V K +
Sbjct: 488 FLLRRIKTEVEKSLPPKKEIKLFVGLSTMQ-KEWYKRLLSKDLDAVVVGAKGNTGRVRLL 546
Query: 451 SLKFTEKNLINKIYT-DSAEAKIP--------------AVLD-YLETVIEAGCKFLIFAH 494
++ + N Y D AE + P A+LD L+ + E G + LIF+
Sbjct: 547 NICMQLRKACNHPYLFDGAEEE-PYTTGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQ 605
Query: 495 HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLT 553
MLD + L + RIDG T R+ + + + D+ A +L+ +AGG+G+T
Sbjct: 606 MSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGIT 665
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
L A VI + W P +QA+DRAHRIGQ V VY + +++++ + + KL+
Sbjct: 666 LNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQ 724
Score = 38 (18.4 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 4 DDEWEFSAEELDF--LEREALQQIAQRHSKPFSD 35
D+ E E L+ LE+E L+QI ++ K +
Sbjct: 121 DETEEARNERLESIRLEKERLKQIREQQRKQLQE 154
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 210 (79.0 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 76/269 (28%), Positives = 125/269 (46%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCF-- 213
+ E+ +Q + L +Q G+ + L + + +LADEMGLGKTIQ IA T
Sbjct: 854 IHEEVEQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIE 913
Query: 214 --RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271
P LI+ P S +W ++W PS + G + T+ S N
Sbjct: 914 KKNQQGPFLIIVPLSTLTNWIMEFEKWA---PSVKKIAYK---GPPQLRKTLQSQIRSSN 967
Query: 272 IPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329
FN++ +++ ++K + +L + +I DE H +KN Q+K T+ TL +QY
Sbjct: 968 ------FNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTS-TLSTYYHSQY 1020
Query: 330 ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCK--GGVFGIYQGASNHEE--- 384
L+L+GTP + EL+ L + P ++ ++ + + G + N EE
Sbjct: 1021 RLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALL 1080
Query: 385 ----LHNLMKATVMIRRLKKDVLAQLPVK 409
LH +++ + RRLKKDV +LP K
Sbjct: 1081 IIKRLHKVLRP-FLFRRLKKDVEKELPDK 1108
Score = 206 (77.6 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 59/195 (30%), Positives = 97/195 (49%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + G K L+F ++ + K +R+DG T R +L+ +F
Sbjct: 1191 LLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFN 1250
Query: 534 E-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ K DV +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ V +
Sbjct: 1251 DPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILR 1310
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNV 652
L+ ++++ + + KL+ LDG ++ +S+P ++ ++FL+
Sbjct: 1311 LITEKSIEENILSRAQYKLD-----LDG--KVIQAGKFDNKSTPEER---EAFLRSLLEH 1360
Query: 653 D-DSEHQQKLKYRKL 666
D D +H L Y +L
Sbjct: 1361 DGDDDHD--LTYGEL 1373
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 235 (87.8 bits), Expect = 6.5e-29, Sum P(2) = 6.5e-29
Identities = 99/343 (28%), Positives = 162/343 (47%)
Query: 154 SAAPDLREKYDQIPA-HIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
+ A + E+ D+ A + L +Q G+ + + + + +LADEMGLGKTIQ IA+
Sbjct: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 210 ATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-SNRSGFTIV 264
T R P LI+ P S +WA +W PS VV +S G + R F
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA---PS--VVKVSYKGSPAARRAFVPQ 847
Query: 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324
+ K N+ L +Y+ ++K ++IL +K +I DE H +KN K T L
Sbjct: 848 LRSGKFNVLLT------TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTH 900
Query: 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384
A LLL+GTP ++ EL+ L L P ++K+ + + + N EE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 385 -------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LH +++ ++RRLKK+V AQLP K + D++ ++++ L+R ++ K
Sbjct: 961 TILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--LYRHMQA-K 1014
Query: 438 GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
G + SE++ + K K L+N I P + ++E
Sbjct: 1015 GVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 180 (68.4 bits), Expect = 6.5e-29, Sum P(2) = 6.5e-29
Identities = 44/130 (33%), Positives = 68/130 (52%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F E + +LS +
Sbjct: 1098 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTR 1157
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1218 AKYKL-NVDQ 1226
Score = 48 (22.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + + + Q K
Sbjct: 521 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKE 579
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE + PA+
Sbjct: 580 KKKKKKKK-KAENAEGQTPAI 599
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 351 (128.6 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 135/512 (26%), Positives = 237/512 (46%)
Query: 162 KYDQIPAHIESKLL-PFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIA-VATCF--R 214
K D P+ I + L +Q +G+ + + + ++LADEMGLGKTIQ I+ ++ F +
Sbjct: 742 KLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQ 801
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
D+ P L++ P S +W +W P ++V G +R + T +
Sbjct: 802 DIKGPFLVVVPLSTIENWQREFAKWA--PAMNVIVYTGT--GQSRDIIRLYEFYTTNRLG 857
Query: 274 LDGL-FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYA 330
L FN++ +YD +LK +N L + ++ + DE+H LKN+++ L +
Sbjct: 858 KKKLNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESV-LHEVLKLYNTTN-R 915
Query: 331 LLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL--HNL 388
LL++GTP + EL+ L L P+ + ++ ++ ++Y + Q A H L H L
Sbjct: 916 LLVTGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQY--SDLKENDQIAQLHSVLKPHLL 973
Query: 389 MKATVMIRRL---KKDVLAQLPVKRRQQVFLD-VAEKDMRQIYALFRE----LEVVKGKI 440
+ + + K + + ++ + Q+ + + K+ +++ E L ++
Sbjct: 974 RRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGEKTTLLNIMTELK 1033
Query: 441 KACKSEEEVQSLKFTEKNLINKIYTDS---AEAKIPAVLDYLETVIEAGCKFLIFAHHQP 497
K C Q+ + E L K DS A K+ + L + E G + LIF+
Sbjct: 1034 KTCNHPYLYQNAR-DECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVLIFSQMVR 1092
Query: 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTA 556
MLD + + R+DG R + F D +LS KAGG+G+ L+
Sbjct: 1093 MLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGINLST 1152
Query: 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQ 616
A TVI + W P + +QAE RAHRIGQ + VN+Y L++ +V++ + + + K+
Sbjct: 1153 ADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVLDHL 1212
Query: 617 VLDGHENSLEVSSSQIRSSPAKQKT-LDSFLK 647
V+ E S S+ +S K L++ LK
Sbjct: 1213 VIQTMEKSQTAKSNTPNNSNVFNKEELEAILK 1244
Score = 59 (25.8 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 605 DVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYR 664
D++ +++N +LD N + + S++++ + A Q+ +DS LK ++ + +++ K
Sbjct: 1517 DII--EIDNTAPLLDA--NGVPIPSNKLKGA-ALQRRVDSLLKSAKDISKTTNKKSSKQT 1571
Query: 665 K 665
K
Sbjct: 1572 K 1572
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 215 (80.7 bits), Expect = 8.0e-29, Sum P(3) = 8.0e-29
Identities = 60/169 (35%), Positives = 89/169 (52%)
Query: 450 QSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK 509
++L+F E LI Y D + + AVL + + C LIF MLD + Q FL
Sbjct: 1173 RALQFPELRLIE--Y-DCGKLQTLAVLLRQLYLYKHRC--LIFTQMSKMLDVL-QTFLSH 1226
Query: 510 KVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWT 568
+ R+DG T RQA++ F V +LS ++GGVG+ LT A TVIF + W
Sbjct: 1227 HGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWN 1286
Query: 569 PGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV 617
P QA+DR HRIGQ +V++Y L++ T+++ + K LG++
Sbjct: 1287 PTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQK-RRLGEL 1334
Score = 213 (80.0 bits), Expect = 8.0e-29, Sum P(3) = 8.0e-29
Identities = 76/291 (26%), Positives = 140/291 (48%)
Query: 166 IPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVAT---CFRDVW-P 218
+P I +L +Q G+ + + + +LADEMGLGKTIQ I++ C +W P
Sbjct: 550 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGP 609
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ P+S+ L+W ++W P+ + +L+ G + + ++ F
Sbjct: 610 HLIVVPTSVILNWEMEFKKWC---PA--LKILTYFGTAKER------AEKRKGWMKPNCF 658
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY V + ++ +I DE+ +KN +++R A L + +A+ LLL+GT
Sbjct: 659 HVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNV--RARRRLLLTGT 716
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE-----ELHNLMKA 391
P + +EL+ + L P ++ + H+ + + G+ +G LH +++
Sbjct: 717 PLQNSLMELWSLMHFLMPTIFSS-HDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRP 775
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKA 442
++ RRLKK+V QLP K V ++++ R +Y F K +K+
Sbjct: 776 FIL-RRLKKEVEKQLPEKTEHIVNCSLSKRQ-RYLYDDFMSRRSTKENLKS 824
Score = 41 (19.5 bits), Expect = 8.0e-29, Sum P(3) = 8.0e-29
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 12 EELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDFSKEQV 71
E+L+ ++RE L++ Q+ K K+E + + P S A P S D + EQ+
Sbjct: 436 EDLEEMKREKLEE--QKARKEACGDNEEKME-IDES----PSSDAQKPSTSSSDLTAEQL 488
Score = 41 (19.5 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 22 LQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLSVKFFLH 81
+++ A+R + + + L SR LP V P + D+ E+V ++V F
Sbjct: 199 VERAAKREAHVLARIAELRKNGLWSNSR-LPKCVEPERNKTHWDYLLEEVKWMAVDFRTE 257
Query: 82 TS 83
T+
Sbjct: 258 TN 259
Score = 40 (19.1 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 128 VLSEISGYNVEIENLHPLVQRAIASASAAPDL-REKY--------DQIPAHIESKL 174
+ ++ SG++ + N+ V R SA +P L R+K D +P H+ K+
Sbjct: 998 ISTDRSGFHFNMANVGRGVVRLDDSARMSPPLKRQKLTGTATNWSDYVPRHVVEKM 1053
Score = 39 (18.8 bits), Expect = 5.1e-28, Sum P(4) = 5.1e-28
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 138 EIENLHPLVQRAIASASAAPDLREKYD 164
+++ + +VQ + S+S +P + D
Sbjct: 342 QVDEMSNIVQEGLVSSSKSPSIASDRD 368
Score = 37 (18.1 bits), Expect = 3.0e-10, Sum P(4) = 3.0e-10
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 418 VAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAE 469
+ ++D+ ++ +LE K + +AC EE + + + K T S++
Sbjct: 433 LTQEDLEEMKR--EKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSD 482
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 214 (80.4 bits), Expect = 8.1e-29, Sum P(2) = 8.1e-29
Identities = 53/151 (35%), Positives = 79/151 (52%)
Query: 451 SLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK 510
S+ F +K L+ Y ++ +L L+ G + LIF MLD + Q FL
Sbjct: 1359 SIAFPDKRLLQ--YDCGKLQRLDKLLRDLKA---GGHRALIFTQMTKMLDVLEQ-FLNIH 1412
Query: 511 VH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTP 569
H +R+DG T RQ L F + + A +LS ++GG+G+ LT A TVIF +L W P
Sbjct: 1413 GHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNP 1472
Query: 570 GDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
Q +DR HRIGQ V++Y ++ T++
Sbjct: 1473 AMDKQCQDRCHRIGQTRDVHIYRFVSEYTIE 1503
Score = 201 (75.8 bits), Expect = 8.1e-29, Sum P(2) = 8.1e-29
Identities = 84/309 (27%), Positives = 145/309 (46%)
Query: 144 PLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGL 200
P + A S S P L+ IP + L +Q G+ + A + I +LADEMGL
Sbjct: 798 PAEKHAQPSESPGPGLKTP---IPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGL 854
Query: 201 GKTIQAIAVATCF---RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGS 256
GKTIQ IA+ VW P L++ P+S+ L+W ++W P +I ++ G
Sbjct: 855 GKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWC--PGFKI---MTYYGNQ 909
Query: 257 NRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQA 314
+R D +N++ SY +VL+ Q +L ++ +I DE+H +KN ++
Sbjct: 910 EER------RQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRS 963
Query: 315 KRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYP--------DVYKNVHEYGNR 366
+R A L +A+ LLL+GTP + EL+ L L P + + ++ +
Sbjct: 964 QRWQALLTFRTRAR--LLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEW 1021
Query: 367 YCKGGVFGIYQGASNHEE--------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDV 418
+ + + G ++ LH +++ ++ RRLK DV Q+P K V+ +
Sbjct: 1022 FRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYIL-RRLKADVEKQMPGKYEHVVYCRL 1080
Query: 419 AEKDMRQIY 427
+++ R +Y
Sbjct: 1081 SKRQ-RYLY 1088
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 221 (82.9 bits), Expect = 9.1e-29, Sum P(2) = 9.1e-29
Identities = 64/227 (28%), Positives = 113/227 (49%)
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
M+RR+K DVL LP K +QV + ++Y F + +K + ++ + +
Sbjct: 1025 MLRRVKSDVLKSLPSKN-EQVLMCPLTPFQEKLYLEFLDSNDIKSVLDGRRNA--LYGID 1081
Query: 454 FTEK--NLINKIYTDSAEAKIP---------AVLDYLETVI----EAGCKFLIFAHHQPM 498
+K N + ++ D+++ P A L +ET++ + G K L+F + M
Sbjct: 1082 ILKKICNHPDILHMDASDEDRPHDYGNIERSAKLKVVETILPLWFKQGDKVLLFCQTRQM 1141
Query: 499 LDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557
LD + Q + + +R+DG T RQ LV +F + +L+ K GG+GL LT A
Sbjct: 1142 LDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNIDPSLFIFLLTTKVGGLGLNLTGA 1201
Query: 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 604
+ VI + W P +QA +R +RIGQ +V +Y L+ T+++ ++
Sbjct: 1202 NRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKIY 1248
Score = 193 (73.0 bits), Expect = 9.1e-29, Sum P(2) = 9.1e-29
Identities = 84/334 (25%), Positives = 151/334 (45%)
Query: 126 EKVLSEISGYNVEIENLHPLVQRAIASASAAPD---LREKYDQIPAHIESKLLPFQRDGV 182
E VL++ + N EIE + + A D + E + +IP I L +Q V
Sbjct: 747 EAVLNKNN--NNEIEKIFEEEEEKEAEEEIIGDDYEIDENF-KIPFDIYKNLFEYQVTCV 803
Query: 183 RFALQ-H----GGRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAA 233
R+ + H GG ++ DEMGLGKT+Q ++ R P LI+ P++L +W
Sbjct: 804 RWLYELHCQETGG--IVGDEMGLGKTVQIVSFLASLHYSRRLGGPALIVAPATLLSNWIK 861
Query: 234 MIQQWLNIPPSEIVVVLSQ-LGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI 292
+W PP + + S GG G + + I G + ++D + Q I
Sbjct: 862 EFHKWW--PPFRVGLFHSSGSGGGGNDGSD--KEDIVKKIAEKGHILLTTFDSIRINQEI 917
Query: 293 LMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEAL 352
L+ +++ VI DE H ++N A+ T + + + + ++LSG+P ++ EL+ + +
Sbjct: 918 LLKYHWEYVILDEGHKIRNPDAEITLSCKQL--QTPHRVILSGSPIQNKLTELWSLFDFV 975
Query: 353 YPDVYKNVHEYGNRYCKGGVFGIYQGASNHE---------ELHNLMKATVMIRRLKKDVL 403
+P + + +++ G + AS + L +L+ + M+RR+K DVL
Sbjct: 976 FPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLI-SPYMLRRVKSDVL 1034
Query: 404 AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK 437
LP K +QV + ++Y F + +K
Sbjct: 1035 KSLPSKN-EQVLMCPLTPFQEKLYLEFLDSNDIK 1067
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 235 (87.8 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 95/351 (27%), Positives = 162/351 (46%)
Query: 146 VQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGK 202
+Q A A A + EK + + +L +Q G+ + + + + +LADEMGLGK
Sbjct: 740 LQSYYAVAHAVTEKVEKQSSLL--VNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGK 797
Query: 203 TIQAIAVATCFRDV----WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
TIQ IA+ T + P LI+ P S +W +W PS + V + R
Sbjct: 798 TIQTIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWA---PSVVKVSYKGSPAARR 854
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
+ I+ S G FN++ +Y+ ++K + +L +K +I DE H +KN K
Sbjct: 855 AFLPILRS---------GKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKL 905
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376
T L A +LL+GTP ++ EL+ L L P ++K+ + +
Sbjct: 906 TQV-LNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 964
Query: 377 QGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYAL 429
+ N EE LH +++ ++RRLKK+V AQLP K + D++ ++++ L
Sbjct: 965 KVDLNEEETILIIRRLHKVLRP-FLLRRLKKEVEAQLPEKVEYVIKCDMSA--LQRV--L 1019
Query: 430 FRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
+R ++ KG + SE++ + K K L+N I P + ++E
Sbjct: 1020 YRHMQA-KGVLLTDGSEKDKKG-KGGTKTLMNTIMQLRKICNHPYMFQHIE 1068
Score = 178 (67.7 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 43/130 (33%), Positives = 67/130 (51%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMK 546
K L+F ++ + F + +R+DG T R L+ F + +LS +
Sbjct: 1110 KVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPSHQYFIFLLSTR 1169
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L +A TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1170 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1229
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1230 AKYKL-NVDQ 1238
Score = 51 (23.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 397 RLKKDVLAQLPVKRRQ--QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKF 454
R++K+ + +L + + + +D +KD R Y L + E V + ++ + Q+LK
Sbjct: 539 RIEKERMRRLMAEDEEGYRKLID-QKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKD 597
Query: 455 TEKNLINKIYTDSAEAKIPAV 475
+K K ++AE PA+
Sbjct: 598 KKKKKKKK-KPENAEGGAPAL 617
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 230 (86.0 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 57/160 (35%), Positives = 88/160 (55%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547
K LIF+ +LD + + + R+DG TP RQ+++ F K+ + +LS +
Sbjct: 1003 KVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIPVFLLSTNS 1062
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+G+ LT A+ VIF +LS+ P QAEDRAHR+GQ V +Y LLA +TVD + +
Sbjct: 1063 GGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESA 1122
Query: 608 RSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLK 647
K + VL+ E + + ++++S K LDS K
Sbjct: 1123 NQKKKLNDNVLE--EGTFNNAETKLQSKNIL-KILDSIFK 1159
Score = 180 (68.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 86/331 (25%), Positives = 151/331 (45%)
Query: 157 PDLREKYDQIPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIA----V 209
P K P I + +Q G+ + A+ + +I +LADEMGLGKT+Q I+ +
Sbjct: 525 PTFSHKLVAQPKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLAHI 584
Query: 210 ATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTK 269
+ D P L++ P+++ +W Q W PS +V + G+ R + K
Sbjct: 585 KEAYNDNGPHLVVVPATILANWEREFQTWC---PSLSIV---RYYGNLREREELRYELKK 638
Query: 270 RNIPLDGLFNII--SYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325
+ D FN+I +Y+++ + L ++ +I DE+ +KN+ +KR I
Sbjct: 639 KRPGKD--FNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKI-- 694
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL 385
A + LLL+GTP + EL+ L L P ++ +V + + Y + Y G +
Sbjct: 695 GAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKK--DNYLLNQLLE-YNGDDCDSAI 751
Query: 386 HNLMK--ATVMIRRLKKDV------------LAQLPVKRRQQVFLDVAEKDMRQIYALFR 431
+ K + ++RRLK V + +LP K + + + ++ E+ Q + L
Sbjct: 752 TRMKKILSPFILRRLKSTVSKELKPKIEHVEICKLP-KFQDETYKNIIERSKSQ-WKLRN 809
Query: 432 ELEVVKGKIKACKSEEEVQSLKFTEKNLINK 462
EL + K K + E+E QSL + + I K
Sbjct: 810 ELLLKKEKEE---KEKEKQSLINSSNSSIKK 837
Score = 45 (20.9 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 1 MEVDDEWEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTL 51
+E+DDE E EE + E ++Q+ Q + + ++E+ P R +
Sbjct: 425 IEIDDEKE---EEKQVEQVEQVEQVEQVEQEEGEEEEEEEIESEPTIERLI 472
Score = 38 (18.4 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 2 EVDDEWEFSAEELDFLEREALQ-QIAQRHSK 31
E DDE EF+ + +R+ Q Q Q SK
Sbjct: 123 EEDDEDEFNLPNVSVEQRKKKQKQQEQESSK 153
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 351 (128.6 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 137/496 (27%), Positives = 240/496 (48%)
Query: 155 AAPDLREKYDQIPAHIES-KLLPFQRDGVRFALQ-----HGGRILLADEMGLGKTIQAIA 208
A ++EK + P+ ++ +L +Q +G+++ + + G +LADEMGLGKTIQ IA
Sbjct: 366 AIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNG--ILADEMGLGKTIQTIA 423
Query: 209 VATCF---RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIV 264
+ +D+ P LIL P ++ +W W PS I L GS I
Sbjct: 424 LIAYLLESKDLHGPHLILAPKAVLPNWENEFALWA---PS-ISAFLYD--GSKEKRTEI- 476
Query: 265 SSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322
+ I G FN++ YD++++ + L ++ +I DE H LKN + A TL
Sbjct: 477 ----RARIA-GGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECA-LAKTLG 530
Query: 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS-- 380
+ + LLL+GTP + EL+ L L P ++ ++H + + F AS
Sbjct: 531 TGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWF--NTPFAECGSASLT 588
Query: 381 NHEEL------HNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE 434
+ EEL H++++ ++RR K +V LP K QV L +++Y ++++
Sbjct: 589 DEEELLIINRLHHVIRP-FLLRRKKSEVEKFLPGKT--QVILKCDMSAWQKLY--YKQVT 643
Query: 435 VVKGKI---KACKSEEEVQSLKFTEKNLINKIY----TDSAEAKIPAVL------DYLET 481
V G++ + +Q+L + N Y D K P ++ + L+
Sbjct: 644 DV-GRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDR 702
Query: 482 VI----EAGCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKD 536
++ +AG + L+F+ ++D + +++L + +R+DG T R L+ +F E D
Sbjct: 703 LLPKLKKAGHRILLFSQMTRLIDLL-EIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPD 761
Query: 537 DVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLA 595
+LS +AGG+GL L A T+I + W P QAEDRAHRIGQ V V+ L++
Sbjct: 762 SPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 821
Query: 596 NDTVDDIVWDVVRSKL 611
++++++ + + K+
Sbjct: 822 IGSIEEVILERAKQKM 837
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 203 (76.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 82/284 (28%), Positives = 131/284 (46%)
Query: 182 VRFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-WPVLILTPSSLRLHWAAMIQQW 238
+R ++G +LADEMGLGKTIQ IA R V P L+ P S +W + ++
Sbjct: 233 LRMLWENGINGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGPLSTLPNW---MSEF 289
Query: 239 LNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNF 298
P EI ++L R + ++ + + I S+++ ++ +N L S +
Sbjct: 290 KRFTP-EIPLMLYHGAQQERRKLVRKIHGRQGSLKIHPVV-ITSFEIAMRDRNALQSCFW 347
Query: 299 KIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYK 358
K +I DE H +KN R L A LLL+GTP + EL+ L L PDV+
Sbjct: 348 KYLIVDEGHRIKNMNC-RLIRELKRFN-ADNKLLLTGTPLQNNLAELWSLLNFLLPDVFD 405
Query: 359 NVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKATV--MIRRLKKDVLAQLPVKRRQ 412
++ + + + + + A E+ LH L + ++RRLK DV ++P KR
Sbjct: 406 DLKSFESWFDITSITETAEDIIAKEKEQNILHMLHQILTPFLLRRLKSDVALEVPPKREV 465
Query: 413 QVFLDVAEKDMRQIYALF-RELEVVKGKIKACKSEEEVQSLKFT 455
V+ +A+K A+ R + + G +EEEV L T
Sbjct: 466 VVYAPLAKKQETFYTAIVNRTIRNLLGN-----NEEEVVELSPT 504
Score = 201 (75.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 53/164 (32%), Positives = 85/164 (51%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + + G K L+F+ MLD + + R+DG + R+ + +F
Sbjct: 603 LLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFN 662
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
+V ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L
Sbjct: 663 NDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 594 LANDTVDDIVWD--VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D + + + KLE L ++ H+N + S + S
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKL--II--HKNQFKGGKSGLAQS 762
Score = 38 (18.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 284 DVVLKLQNILM 294
+V LKLQNI+M
Sbjct: 555 EVNLKLQNIMM 565
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 349 (127.9 bits), Expect = 2.9e-28, P = 2.9e-28
Identities = 133/478 (27%), Positives = 222/478 (46%)
Query: 163 YDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDVW-- 217
+ + PA I+ + +Q G+ + + H I +LADEMGLGKT+Q I+ R +
Sbjct: 175 FRESPAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMGI 234
Query: 218 --PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLD 275
P L++ P S +W +W P V+VL G+ +++ +D
Sbjct: 235 TGPHLVIVPKSTLDNWKREFGKWT---PEVNVLVLQ---GAKEERAALIAERL-----VD 283
Query: 276 GLFN--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLL 333
F+ I SY+++L+ ++ L ++ +I DE+H +KN ++ A + + ++ LL+
Sbjct: 284 ESFDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESS-LAQVIRLFN-SRNRLLI 341
Query: 334 SGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLM---- 389
+GTP + EL+ L L PDV+ + + + G H L +
Sbjct: 342 TGTPLQNNIHELWALLNFLLPDVFGDSEAFDQWFSGEGQDSDTVVQQLHRVLRPFLLRRV 401
Query: 390 KATVMIRRL-KKDVLAQLPVKRRQQVFLD-VAEKDMRQIYALF--RE-----LEVVKGKI 440
KA V L KK+V L + Q+ + + EKD+ + RE L +V
Sbjct: 402 KADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLR 461
Query: 441 KACKSEEEVQSLK-----FTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAH 494
K C + + T+++L+ Y K+ VLD L ++A G + LIF+
Sbjct: 462 KCCNHPYLFEGAEPGPPYTTDEHLV---YNSG---KM-VVLDKLLKRLKAQGSRVLIFSQ 514
Query: 495 HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLT 553
+LD + + ++ RIDGGT R A + E+ + K +L+ +AGG+G+
Sbjct: 515 MSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGIN 574
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
LT A VI + W P +QA DRAHRIGQ V VY L ++T+++ V + KL
Sbjct: 575 LTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKL 632
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 207 (77.9 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 51/162 (31%), Positives = 86/162 (53%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + + G K LIF+ +LD + + R+DG A R + +F
Sbjct: 619 ILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFS 678
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
+V +LS +AGG+G+ LT+A TVI + W P +QA+DR HRIGQ V V+ L
Sbjct: 679 SDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRL 738
Query: 594 LANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D+ + + +K + V+ H+N + S ++++ S
Sbjct: 739 ITANTIDEKILERASAKRKLEKMVI--HKNKFKGSKAELKQS 778
Score = 195 (73.7 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 70/258 (27%), Positives = 124/258 (48%)
Query: 177 FQRDGV---RFALQHGGRILLADEMGLGKTIQAIA-VATCFRD--VWPVLILTPSSLRLH 230
+Q +G+ R ++G +LADEMGLGKTIQ IA +A + P L++ P S +
Sbjct: 236 YQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVEKKVLGPFLVVAPLSTLPN 295
Query: 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII-SYDVVLKL 289
W I ++ P E+ V+L G + +V + L ++ S+++ ++
Sbjct: 296 W---ISEFKRFTP-EVSVLLYH--GPQKERLDLVKKIRQHQGSLRMCPVVVTSFEIAMRD 349
Query: 290 QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQL 349
+ L ++ +I DE H +KN R L ++ LLL+GTP + EL+ L
Sbjct: 350 RKFLQRFHWNYLIVDEGHRIKNLNC-RLVQELKMLP-TDNKLLLTGTPLQNNLSELWSLL 407
Query: 350 EALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LH--NLMKATVMIRRLKKDVL 403
L PDV+ ++ + + + + + A+ E+ LH +L+ ++RRLK DV
Sbjct: 408 NFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQNILHMLHLILTPFLLRRLKSDVT 467
Query: 404 AQLPVKRRQQVFLDVAEK 421
++P K+ V+ + K
Sbjct: 468 LEVPPKKEIVVYAPLTNK 485
Score = 46 (21.3 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 273 PLDGLFNIISYDVVLKLQNILM 294
P+ +F + V LKLQNILM
Sbjct: 560 PVVNVFMPVDAQVNLKLQNILM 581
Score = 44 (20.5 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
LILTP LR + + L +PP + +VV + L + + + + T
Sbjct: 452 LILTPFLLRRLKSDVT---LEVPPKKEIVVYAPLTNKQEAFYMAIVNKT 497
Score = 43 (20.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDM-RQIYALFREL--EVVKGKIKACKSEEEVQSLK 453
RL+K A L K + + V K R+ Y + + E + K K K EEE Q+
Sbjct: 118 RLEKKA-AVLKQKGSDKKTVKVERKKRGREDYKIADVMTKEEIMSKAKKPKMEEEAQASV 176
Query: 454 FTEKNLINKIYTDSAEAK 471
E I K+ +++ K
Sbjct: 177 KLEAEDIEKLSDTNSDIK 194
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 216 (81.1 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 55/171 (32%), Positives = 92/171 (53%)
Query: 443 CKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAI 502
C+ + + EK LI DS K + L + E G + ++F+ MLD +
Sbjct: 781 CREYSSISGFQL-EKALI----LDSG--KFALLTKTLAKLKEKGDRVVLFSQFTMMLDIV 833
Query: 503 HQLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561
++ LK H +R+DG TP A R L+ ++ ++ +LS +AGG G+ L +A+TVI
Sbjct: 834 -EILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFLLSTRAGGQGINLASANTVI 892
Query: 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
++ P + QAEDR HR+GQ +V V L++ D+++D + V + KL+
Sbjct: 893 LHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKDSIEDCMLRVGQEKLK 943
Score = 187 (70.9 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 87/322 (27%), Positives = 146/322 (45%)
Query: 173 KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIA-VATCFRD--VWPVLILTPSS 226
KL +Q G+++ + QH +LADEMGLGKTIQAIA +A + P LI PSS
Sbjct: 447 KLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEKGIKGPHLITVPSS 506
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL--FNII--S 282
+W + W PS + VL G + +++I L GL FNII +
Sbjct: 507 TLDNWVRELGLWC---PS--LKVLIYYGSVEDRKYL------RQDI-LTGLIDFNIIVST 554
Query: 283 YDVVLKL---QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
Y++ + +++ K + DE H LKN + R + I A++ LLL+GTP
Sbjct: 555 YNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTI--NAEHRLLLTGTPLQ 612
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL---HNLMKATVMIR 396
+ +EL L + P ++ + ++ + +S H++ L+ ++R
Sbjct: 613 NNLLELMSLLNFIMPSMFSSSTSQISKMFS--TRSSEEESSFHKDRIAQARLIMKPFILR 670
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456
R+K +VL +LP K + +++ + LF+ L+ K +Q K
Sbjct: 671 RVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKRLKKTPNGDKRELCNVMMQLRKMAN 730
Query: 457 KNLINKIY--TDSAEAKIPAVL 476
L+++ Y +D A A+L
Sbjct: 731 HPLLHRQYYTSDKLAAMSKAML 752
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 220 (82.5 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 80/261 (30%), Positives = 129/261 (49%)
Query: 174 LLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRDV---WPVLILTPSSL 227
L P+Q +G+ + + ++G +LADEMGLGKT+Q+IA+ ++ P L+ P S
Sbjct: 222 LKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLST 281
Query: 228 RLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDV 285
+W + ++ P + VL G +G+ S+ K G I+ SY++
Sbjct: 282 LDNW---MNEFAKFAPD--LPVLKYYG---TNGYKERSAKLKNFFKQHGGTGIVITSYEI 333
Query: 286 VLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIEL 345
+L+ +++MS N+K +I DE H LKN R L I + LLL+GTP + EL
Sbjct: 334 ILRDTDLIMSQNWKFLIVDEGHRLKNINC-RLIKELKKINTSN-RLLLTGTPLQNNLAEL 391
Query: 346 FKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS--------NHE-------ELHNLMK 390
+ L + PD++ + E N++ + G++ N E LH ++K
Sbjct: 392 WSLLNFIMPDIFADF-EIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILK 450
Query: 391 ATVMIRRLKKDVLAQ-LPVKR 410
++RRLKK VLA LP KR
Sbjct: 451 P-FLLRRLKKVVLANILPPKR 470
Score = 181 (68.8 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 47/149 (31%), Positives = 74/149 (49%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVT 530
K+ + + +I G K LI++ MLD I RIDG +R+ +
Sbjct: 604 KLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLE 663
Query: 531 EFQE-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
+F KD +LS +A G+G+ L A TV+ + W P +QA DR HRIGQ S V
Sbjct: 664 KFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVI 723
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVL 618
VY L ++T++ ++ +K NL +++
Sbjct: 724 VYRLCCDNTIEHVILTRAANK-RNLERMV 751
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 363 (132.8 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 143/513 (27%), Positives = 253/513 (49%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 481 PAYLGGENLELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQL 539
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 540 YGPFLIVVPLSTLTSWQREFEIWA--PEVNVVVYIGDLMSRNTIREYEWIHSQTKR-LKF 596
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++
Sbjct: 597 NAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 652
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 653 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 709
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 710 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKC 768
Query: 443 CKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPML 499
C +++ + +E+ ++ + K+ +LD L T + E G + LIF+ ML
Sbjct: 769 CNHCYLIRAPEDSERETGQEVLQSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRML 827
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAS 558
D + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 828 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 887
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG- 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 888 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 947
Query: 616 QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 948 QRMDTTGRTVLENNSGRSNSNPFNKEELTAILK 980
Score = 39 (18.8 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
D + ++R LE G V G E L+ +++
Sbjct: 1322 DYLLKLLRKGLEKKGTVTSGEEAKLKKRKPRVK 1354
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 357 (130.7 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 140/504 (27%), Positives = 245/504 (48%)
Query: 173 KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTP 224
+L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F P LI+ P
Sbjct: 483 ELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 541
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISY 283
S W + W P +VV + L N + + S TKR + + L I +Y
Sbjct: 542 LSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKFNAL--ITTY 596
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++GTP +
Sbjct: 597 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSHHRLLITGTPLQNSLK 654
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
EL+ L + P+ ++ ++ + KG G YQ S H+ L + V + ++K +
Sbjct: 655 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK-KDVEKSLP 710
Query: 404 AQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKACKSEEEVQS 451
A++ + R ++Q + + ++ + + R L +V K C ++
Sbjct: 711 AKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKP 770
Query: 452 LKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLK 508
+ E+ ++ + K+ +LD L T + E G + LIF+ MLD + +
Sbjct: 771 PEENERENGQEVLLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 829
Query: 509 KKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSW 567
K R+DG R+ + F + + +LS +AGG+G+ L +A TV+ + W
Sbjct: 830 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 889
Query: 568 TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-QVLDGHENS 624
P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q +D +
Sbjct: 890 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 949
Query: 625 -LEVSSSQIRSSPAKQKTLDSFLK 647
LE +S + S+P ++ L + LK
Sbjct: 950 VLENNSGRSNSNPFNKEELTAILK 973
Score = 42 (19.8 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLD 643
D + ++R LE G V G E L+ +++ + + D
Sbjct: 1315 DYLLKLLRKSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKD 1357
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 244 (91.0 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 76/265 (28%), Positives = 133/265 (50%)
Query: 384 ELHNLMKATV--MIRRLKKDVLAQLPVKRR----------QQVFLDVAEKDMRQIYALFR 431
EL NL+ A ++ +L+K L QL + + +++ + A D Y +F
Sbjct: 673 ELKNLVNANRENILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDANPQY-IFE 731
Query: 432 ELEVVKGKIKACKSEEEVQSLK-FTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFL 490
++EV+ + K ++ + L F K K + DSA K+ + L+ + L
Sbjct: 732 DMEVMSD-FELHKLADQYRHLHPFALKG---KPWMDSA--KVKKLCSLLKKS-RPNERIL 784
Query: 491 IFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550
IF+ +LD + + + +R+DG TP +RQ L+ +F ++ K +LS K+GG
Sbjct: 785 IFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGF 844
Query: 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610
G+ LT A+ VI + S+ P D +QAEDRAHR+GQ V+VY L+ +T+++ + + +K
Sbjct: 845 GINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTK 904
Query: 611 LE-NLGQVLDGHENSLEVSSSQIRS 634
L D + E+S ++S
Sbjct: 905 LTLESSLTTDSEKIQKEISGELMKS 929
Score = 152 (58.6 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 77/293 (26%), Positives = 129/293 (44%)
Query: 161 EKYDQIPAHIES--KLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAIAVATCFRD 215
E Q P+ I S L +Q G+ + L + ++ +LADEMGLGKT Q I+ ++
Sbjct: 399 EYNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKE 458
Query: 216 VWPV---LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNI 272
L++ PSS +W ++++ PS L + SG N KR
Sbjct: 459 KGIQNRHLVVVPSSTLGNW---LREFEKFCPS--------LRVESYSGTQSERIN-KRYY 506
Query: 273 PLDGLFNII--SYDVVLKLQN---ILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
+D F+++ +Y + ++ L F I I DE H+LKN ++R + I A
Sbjct: 507 LMDTDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNI--PA 564
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHE-----YGNRYCKGG-VFGIYQGASN 381
+ LL++GTP + EL L + P V+ N + Y + G + Y
Sbjct: 565 NFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERAYLSQER 624
Query: 382 HEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE 434
+M ++ RR K++VL+ LP K + + + E + +Y EL+
Sbjct: 625 ISRAKTIMNPFIL-RRRKENVLSDLPPKIQHVEYCHMEETQL-SLYLSVLELK 675
Score = 50 (22.7 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 2 EVDDEW-EFSAEELDFLEREALQQIAQ 27
EV+DE E+ L+FL LQ+I +
Sbjct: 264 EVEDEMSEYDVRVLNFLNESTLQEIVE 290
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 201 (75.8 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 53/164 (32%), Positives = 85/164 (51%)
Query: 475 VLD-YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L + + G K L+F+ MLD + + + R+DG + R+ + F
Sbjct: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
+V ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L
Sbjct: 663 TDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 594 LANDTVDDIVWD--VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D + + + KLE L ++ H+N + S + S
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKL--II--HKNHFKGGQSGLNLS 762
Score = 200 (75.5 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 78/272 (28%), Positives = 131/272 (48%)
Query: 165 QIPAHIESKLLP-FQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-W 217
Q P H ++ +Q +G+ R ++G +LADEMGLGKT+Q IA R V
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 272
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P L+ P S +W A +++ P +I +L G+ +V + KR L +
Sbjct: 273 PFLVCGPLSTLPNWMAEFKRFT---P-DIPTMLYH--GTQEERQKLVRNIYKRKGTLQ-I 325
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
++ S+++ ++ +N L +K +I DE H +KN + R L A LLL+G
Sbjct: 326 HPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKC-RLIRELKRFN-ADNKLLLTG 383
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKA 391
TP + EL+ L L PDV+ ++ + + + + + A E+ LH L +
Sbjct: 384 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 443
Query: 392 TV--MIRRLKKDVLAQLPVKRRQQVFLDVAEK 421
++RRLK DV ++P KR V+ +++K
Sbjct: 444 LTPFLLRRLKSDVALEVPPKREVVVYAPLSKK 475
Score = 48 (22.0 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 196 DEMGLGKTIQAIAVATCFRDVWPVL--ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253
D L +T + I ++V +L ILTP LR + + L +PP VVV + L
Sbjct: 416 DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA---LEVPPKREVVVYAPL 472
Query: 254 GGSNRSGFTIVSSNTKRNI 272
+T + + T N+
Sbjct: 473 SKKQEIFYTAIVNRTIANM 491
Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 279 NI-ISYDVVLKLQNILM 294
NI + +V LKLQNI+M
Sbjct: 549 NIPVESEVNLKLQNIMM 565
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 226 (84.6 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 82/279 (29%), Positives = 135/279 (48%)
Query: 166 IPAHIESKLLPFQRDGVRFALQHGGRIL---LADEMGLGKTIQAIAVAT---CFRDVW-P 218
+P ++ L +Q G+ + + R L LADEMGLGKTIQ IA+ C + W P
Sbjct: 906 VPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGP 965
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLF 278
LI+ PSS+ L+W ++W P +I L+ G V TK N F
Sbjct: 966 HLIVVPSSVMLNWEMEFKKWC--PGFKI---LTYYGSQKERKLKRVGW-TKPNA-----F 1014
Query: 279 N--IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+ I SY +V++ Q +K +I DE+ +KN +++R L + LLL+GT
Sbjct: 1015 HVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNF--STERRLLLTGT 1072
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-----LHNLMKA 391
P + +EL+ + L P V+ + E+ + + G+ +G + E LH +++
Sbjct: 1073 PLQNDLMELWSLMHFLMPYVFSSHREF-KEWFSNPMTGMIEGNMEYNETLITRLHKVIRP 1131
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALF 430
++RRLKK+V Q+P K + ++ + R +Y F
Sbjct: 1132 -FLLRRLKKEVEKQMPKKYEHVITCRLSNRQ-RYLYEDF 1168
Score = 208 (78.3 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 46/116 (39%), Positives = 65/116 (56%)
Query: 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544
G + LIF MLD + + FL H +R+DG T RQ L+ F + +LS
Sbjct: 1674 GHRVLIFTQMTKMLDVL-EAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILS 1732
Query: 545 MKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600
++GGVG+ LT A TVIF + W P QA+DR HRIGQ V++Y L++ T++
Sbjct: 1733 TRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIE 1788
Score = 41 (19.5 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 123 SSAEKVLSEISGYNVEIENLHPLVQR----AIASASAAPDLREKYDQIPAHIESKLLPFQ 178
SS+ K +++ + + L PL Q+ A A+A+AA + IE+ +LP Q
Sbjct: 72 SSSSKQQKQLASAQLPVP-LSPLPQQQQQTAEATAAAAAPAHSNVSVSSSTIEASVLPPQ 130
Score = 40 (19.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 518 GGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV----GLTLTAASTVIFA 563
G P A + VT+ Q VKA+ + +G G+T++A + + A
Sbjct: 2837 GQLPVAGQPQQVTQHQIASLVKASTAAAASGSSVNAGGVTVSATNPTVQA 2886
Score = 38 (18.4 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 611 LENLGQVLDGHENSLEVSSSQIRSSPAKQKT 641
+ NLGQ + ++ + + +SPA Q T
Sbjct: 2622 MPNLGQGASPSQFQTQLRLAAVPTSPATQTT 2652
Score = 37 (18.1 bits), Expect = 6.7e-09, Sum P(4) = 6.7e-09
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 176 PFQRDGVRF 184
PFQ DG+ F
Sbjct: 1211 PFQMDGITF 1219
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 205 (77.2 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 53/164 (32%), Positives = 85/164 (51%)
Query: 475 VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + ++ G K L+F+ MLD + + + R+DG + R+ + F
Sbjct: 581 ILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFN 640
Query: 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
DV ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L
Sbjct: 641 TDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRL 700
Query: 594 LANDTVDDIVWD--VVRSKLENLGQVLDGHENSLEVSSSQIRSS 635
+ +T+D + + + KLE L ++ H+N + S + S
Sbjct: 701 VTANTIDQKIVERAAAKRKLEKL--II--HKNHFKGGQSGLNQS 740
Score = 195 (73.7 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 77/272 (28%), Positives = 131/272 (48%)
Query: 165 QIPAHIESKLLP-FQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCF--RDV-W 217
Q P H ++ +Q +G+ R ++G +LADEMGLGKT+Q IA R V
Sbjct: 191 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 250
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P L+ P S +W A +++ P EI +L G+ + +V +R L +
Sbjct: 251 PFLVCGPLSTLPNWMAEFKRFT---P-EIPTMLYH--GTQQERRILVKHIHERKGTLQ-I 303
Query: 278 FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
++ S+++ ++ + L + +K +I DE H +KN + R L A LLL+G
Sbjct: 304 HPVVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKC-RLIRELKRFN-ADNKLLLTG 361
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG--ASNHEE--LHNLMKA 391
TP + EL+ L L PDV+ ++ + + + + + A E+ LH L +
Sbjct: 362 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 421
Query: 392 TV--MIRRLKKDVLAQLPVKRRQQVFLDVAEK 421
++RRLK DV ++P KR V+ +++K
Sbjct: 422 LTPFLLRRLKSDVALEVPPKREVVVYAPLSKK 453
Score = 48 (22.0 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 196 DEMGLGKTIQAIAVATCFRDVWPVL--ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253
D L +T + I ++V +L ILTP LR + + L +PP VVV + L
Sbjct: 394 DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA---LEVPPKREVVVYAPL 450
Query: 254 GGSNRSGFTIVSSNTKRNI 272
+T + + T N+
Sbjct: 451 SKKQEIFYTAIVNRTIANM 469
Score = 41 (19.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILM 294
P+E+ ++SQ+ TIV ++ +P++ +V LKLQNI+M
Sbjct: 503 PNELEKLISQIQPEVDRERTIVETS----VPIES-------EVNLKLQNIMM 543
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 221 (82.9 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 694 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 753
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 754 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 801
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 802 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 860
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 861 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 919
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 920 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 973
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 974 GGAKTLMNTIMQLRKICNHPYMFQHIE 1000
Score = 185 (70.2 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 45/130 (34%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1042 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1101
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TVI + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1102 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1161
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1162 AKYKL-NVDQ 1170
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 218 (81.8 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 86/315 (27%), Positives = 153/315 (48%)
Query: 147 QRAIASASAAPDLREKYDQIPAH-IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGK 202
+R I + A ++E+ + P+ + L +Q G+++ + + + +LADEMGLGK
Sbjct: 509 RRKIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGK 568
Query: 203 TIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR 258
TIQ I++ T R+ P L++ P S +W ++W PS +V G N
Sbjct: 569 TIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWA---PSVSRIVYK--GPPN- 622
Query: 259 SGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316
++NI G F ++ +Y+ ++K + IL + +I DE H +KN Q+K
Sbjct: 623 -----ARKQQQQNIRW-GNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSK- 675
Query: 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCK--GGVFG 374
++TL ++Y L+L+GTP + EL+ L + P+++K+V + + G
Sbjct: 676 LSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGG 735
Query: 375 IYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVKRRQQV---FLDVAEKDMR 424
+ EE LH +++ ++RRLKKDV LP K+ + + F + K +
Sbjct: 736 QDRMDLTEEEQLLVIRRLHKVLRP-FLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNK 794
Query: 425 QIYALFRELEVVKGK 439
Q+ A ++ V GK
Sbjct: 795 QL-ATHNKMVVSDGK 808
Score = 188 (71.2 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 45/146 (30%), Positives = 80/146 (54%)
Query: 475 VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + +A G + L+F +++ + + + +R+DG T R L+ F
Sbjct: 860 LLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFN 919
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
D + +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ + V +
Sbjct: 920 APDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILR 979
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVL 618
L+ +++V++ + + + KL+ G+V+
Sbjct: 980 LITSNSVEEKILERAQFKLDMDGKVI 1005
Score = 47 (21.6 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 611 LENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLK 647
L N+ Q L E L SS P + ++ F+K
Sbjct: 1236 LNNVYQALMDMEQELPADSSDSEDGPVTRSIIEPFMK 1272
Score = 46 (21.3 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 120 PFLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQ 165
PFL LS ++ +N+E E P V R + P+ R++ Q
Sbjct: 588 PFLVIVP--LSTLTNWNLEFEKWAPSVSRIVYKGP--PNARKQQQQ 629
Score = 41 (19.5 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 592 YLLANDTVDDIVWDVV----------RSKLENLGQVLDGHENSLEVSSSQIRSSPAKQK 640
+L+A D DD + D + RS E G+ G E+S E S + +P +K
Sbjct: 1131 WLMAVDADDDTIEDAIARKEARVEKRRSNKEKRGRKAQGDESSPE-PSRETSETPQPKK 1188
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 222 (83.2 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 59/185 (31%), Positives = 103/185 (55%)
Query: 444 KSEEEVQSLKFTEKNLINK-IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAI 502
K + + + T K L+N+ + S + + V+ L + + G K LIF+ MLD +
Sbjct: 728 KIHQLCERFRCTSKFLLNEQLALKSGKCEQLDVM--LPEIQKKGDKVLIFSQFTSMLDIL 785
Query: 503 HQLFLKKKVHCI-RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561
+++L + + R+DG TP RQ ++ EF D+ +LS +AGG+G+ LT+A+ +I
Sbjct: 786 -EVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHII 844
Query: 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621
++ + P + QAEDR HR+GQ V+V L++ TV+ + + + KL+ QV DG
Sbjct: 845 IHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTDGV 904
Query: 622 ENSLE 626
+ L+
Sbjct: 905 KGQLD 909
Score = 179 (68.1 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 77/281 (27%), Positives = 130/281 (46%)
Query: 165 QIPAHIESKLL-PFQRDGVRFALQHGGRIL---LADEMGLGKTIQAIAVATCFRDVW--- 217
Q+P E L +Q GV++ + + L L DEMGLGKTIQ +A + + +
Sbjct: 384 QLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKTG 443
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL 277
P LI+ PSS +W +W PS + +L+ G + + K+ +D +
Sbjct: 444 PHLIVVPSSTIENWIGEFHKWC---PS--IQLLTYYGSQDERKH-LRHRVKKQKDHIDVI 497
Query: 278 FNIISYDVVL-KLQNILMSSNFKI--VIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ +Y++V K + NF + VI DE H LKN ++R + + K + +LL+
Sbjct: 498 --LTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKV--KGKKKILLT 553
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHE---YGNRYCK--GGVFGIYQGASNHEELHNLM 389
GTP + IEL + + V+ E + ++ K G A ++
Sbjct: 554 GTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQDRIEEA 613
Query: 390 KATV---MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
KA + ++RRLK VL LP K Q + +++ +K +Q+Y
Sbjct: 614 KAILQPYILRRLKNQVLGSLPSKSEQIIEVEM-KKPQKQLY 653
Score = 41 (19.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 4 DDEWEFSAEELDFLEREALQQIAQR 28
D +W+ +E+L +L + Q+ +R
Sbjct: 711 DKKWQHVSEDLAWLSDIKIHQLCER 735
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 213 (80.0 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
Identities = 53/155 (34%), Positives = 84/155 (54%)
Query: 468 AEAKIPAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQ 526
AE+ A LD L ++ G + LI+ M+ + K IR+DG T SR+
Sbjct: 1233 AESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRR 1292
Query: 527 ALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+V +Q ++ +LS +AGG+GL LT+A TVIF + W P QA DRAHRIGQ
Sbjct: 1293 EMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTK 1352
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621
V V+ L+ +T++ + + + K E + +++ G+
Sbjct: 1353 QVKVFRLVTRNTIEQKILERAKEK-EEIQKLVVGN 1386
Score = 192 (72.6 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
Identities = 70/279 (25%), Positives = 134/279 (48%)
Query: 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRD---VW-PV 219
P ++ L +Q G+ + + G +LADEMGLGKT+Q+I+V + +W P
Sbjct: 665 PNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPF 724
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGS-NRSGFTIVSSNTKRNIPLDGLF 278
L++TP+S +W I ++ +P + VL G + +R D F
Sbjct: 725 LVVTPASTLHNWQQEITKF--VPEFK---VLPYWGNAKDRKILRKFWDRKSLRYDKDSPF 779
Query: 279 NII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
+++ SY +++ ++ +I DE+ +K++ + R + L + + + LLL+GT
Sbjct: 780 HVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNR--LLLTGT 837
Query: 337 PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE----LHNLMKAT 392
P + EL+ L + P ++ + E+ + + K S E+ LH ++K
Sbjct: 838 PIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKP- 896
Query: 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFR 431
M+RR+KK+V ++L K V+ D+ + +++Y R
Sbjct: 897 FMLRRIKKNVQSELGDKVEIDVYCDLTTRQ-KKLYQQLR 934
Score = 44 (20.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 28/118 (23%), Positives = 49/118 (41%)
Query: 333 LSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQ-GASNHEELHNLMKA 391
LS A + FK Y + Y + + +R K G G + L NL K
Sbjct: 411 LSEAAAAGMTAKEFKAFMRQYDNTYIAIWKDLSR--KDGPKGSRSMQQATQGRLINLRKT 468
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEV 449
++ R K QL + Q+ A + MR+++ ++ E ++ +K K E+E+
Sbjct: 469 ALLAAREAKRW--QLKNTKNQKDLTTKARRAMREMFNFWKRNERLERDLKK-KHEKEL 523
Score = 40 (19.1 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 589 NVYYLLANDTVDDIVWDVV--RSKL-ENL-GQVLDGHENSLEVSSSQIRSSPAKQKTLDS 644
NV L + D+ D+ + KL + L Q+ + LE+ S+ S + +
Sbjct: 905 NVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVMQ 964
Query: 645 FLKRCNNVD 653
F K CN+ D
Sbjct: 965 FRKVCNHPD 973
Score = 37 (18.1 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 279 NIISYDVVLKLQNILMSSNFKIVIADE--SHF-LKNAQAKRTAATLPIIKKAQYALL-LS 334
NI+ YD+ + + L++ N+ D S F + N + L I + L S
Sbjct: 1010 NIVQYDLPRLIYDELLTPNYNKSTRDSIYSKFSIYNPENMNATGWLQGINVSPNELKHYS 1069
Query: 335 GTPALSRPIEL 345
LSR IE+
Sbjct: 1070 QKDILSRAIEM 1080
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 357 (130.7 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 140/504 (27%), Positives = 245/504 (48%)
Query: 173 KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTP 224
+L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F P LI+ P
Sbjct: 452 ELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 510
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISY 283
S W + W P +VV + L N + + S TKR + + L I +Y
Sbjct: 511 LSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKFNAL--ITTY 565
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++GTP +
Sbjct: 566 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSHHRLLITGTPLQNSLK 623
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
EL+ L + P+ ++ ++ + KG G YQ S H+ L + V + ++K +
Sbjct: 624 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK-KDVEKSLP 679
Query: 404 AQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKACKSEEEVQS 451
A++ + R ++Q + + ++ + + R L +V K C ++
Sbjct: 680 AKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKP 739
Query: 452 LKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLK 508
+ E+ ++ + K+ +LD L T + E G + LIF+ MLD + +
Sbjct: 740 PEENERENGQEVLLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 798
Query: 509 KKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSW 567
K R+DG R+ + F + + +LS +AGG+G+ L +A TV+ + W
Sbjct: 799 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 858
Query: 568 TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-QVLDGHENS 624
P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q +D +
Sbjct: 859 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 918
Query: 625 -LEVSSSQIRSSPAKQKTLDSFLK 647
LE +S + S+P ++ L + LK
Sbjct: 919 VLENNSGRSNSNPFNKEELTAILK 942
Score = 42 (19.8 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLD 643
D + ++R LE G V G E L+ +++ + + D
Sbjct: 1285 DYLLKLLRKSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKD 1327
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 221 (82.9 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 702 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 761
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 762 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 809
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 810 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 868
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 869 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 927
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 928 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 981
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 982 GGAKTLMNTIMQLRKICNHPYMFQHIE 1008
Score = 184 (69.8 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1050 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1109
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1110 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1169
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1170 AKYKL-NVDQ 1178
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 221 (82.9 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 764 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 811
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 870
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 929
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 930 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 983
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 984 GGAKTLMNTIMQLRKICNHPYMFQHIE 1010
Score = 184 (69.8 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1052 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1111
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1112 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1171
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1172 AKYKL-NVDQ 1180
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 221 (82.9 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 764 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 811
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 870
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 929
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 930 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 983
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 984 GGAKTLMNTIMQLRKICNHPYMFQHIE 1010
Score = 184 (69.8 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1052 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1111
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1112 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1171
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1172 AKYKL-NVDQ 1180
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 221 (82.9 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 764 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 811
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 870
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 929
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 930 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 983
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 984 GGAKTLMNTIMQLRKICNHPYMFQHIE 1010
Score = 184 (69.8 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1052 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1111
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1112 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1171
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1172 AKYKL-NVDQ 1180
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 348 (127.6 bits), Expect = 7.1e-28, P = 7.1e-28
Identities = 145/521 (27%), Positives = 244/521 (46%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 462 LKKQPSYIGGHESLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 520
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W P VV L + N + TK
Sbjct: 521 HEHQLYGPFLLVVPLSTLTSWQREIQTWA--PQMNAVVYLGDITSRNMIRTHEWMHPQTK 578
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK ++ L N+ + DE+H LKN + TL I K+
Sbjct: 579 R---LK--FNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 631
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 632 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 688
Query: 388 LMKATVMIRRLKKDVLAQLP-VKRRQQVFLDVAEKDM---RQIYALFRELE-VVKG---- 438
+ V + ++K + A++ + R + L R AL + + G
Sbjct: 689 FLLRRVK-KDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNI 747
Query: 439 --KIKACKSEEEVQSLKFTEKN-LINKI----YTDSAEAKIPAVLDYLETVIEAGCKFLI 491
++K C + +K + N NK + + K+ + L + E G + LI
Sbjct: 748 MMELKKCCNH--CYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLI 805
Query: 492 FAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGV 550
F+ MLD + + ++ R+DG R+ + F E + +LS +AGG+
Sbjct: 806 FSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGL 865
Query: 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610
G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + + + K
Sbjct: 866 GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKK 925
Query: 611 --LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 926 MVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILK 966
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 221 (82.9 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 780 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 827
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 828 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 886
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 945
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 946 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 999
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1000 GGAKTLMNTIMQLRKICNHPYMFQHIE 1026
Score = 184 (69.8 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1068 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1127
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1128 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1187
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1188 AKYKL-NVDQ 1196
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 366 (133.9 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 142/515 (27%), Positives = 238/515 (46%)
Query: 174 LLPFQRDG---VRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVW---PVLILTPSS 226
L FQ +G + + H LLADEMGLGKTIQ+IA + V P L++ P S
Sbjct: 898 LKEFQVEGFLWLSYCWYHCRSSLLADEMGLGKTIQSIAFLQYLSQSVGIKGPFLVVAPLS 957
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYD 284
+W I +W + L G GF I K LF ++ +Y+
Sbjct: 958 TLGNWHKEILKWTKMK------TLVFYGSQETRGF-ISKYEFKHKDTY--LFEVLLTTYE 1008
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
++ + + ++ +I DE H +KN ++K + L IK +++++L+GTP + E
Sbjct: 1009 TIMSDHSSFVRVPWRALILDEGHRIKNDKSK-VLSKLKSIK-TEHSIILTGTPLQNDMKE 1066
Query: 345 LFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404
L+ L L PD + + E+ + Y + S +LH L+ + ++RR+K+DV
Sbjct: 1067 LWTMLNFLDPDKFNSCQEFLDEYSD------LKEESQVSKLHQLL-SPYLLRRMKEDVEL 1119
Query: 405 QLPVKRRQ--QVFLDVAEKDM-RQIYALFREL--EVVKGKIKACK-SEEEVQSLKF---- 454
+P+K QV L +K R I RE +K K K S +Q K
Sbjct: 1120 SIPIKEETVIQVELSSTQKTYYRAILERNREFLSRGIKQKTNLPKLSNIMIQIRKVCNHP 1179
Query: 455 -----TEKNLIN--KIYTDS--------AEAKIPAVLDYLETVIEAGCKFLIFAHHQPML 499
E++++ KI D + +K+ V L+ + G + LIF+ L
Sbjct: 1180 FLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESL 1239
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAAS 558
+ + ++ R+DG RQA + FQ+K + +LS +AGGVG+ LT A
Sbjct: 1240 NILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTTAD 1299
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 618
TVI + W P +QA+ R HRIGQ ++V VY L+ +T ++ +++ KL VL
Sbjct: 1300 TVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVL 1359
Query: 619 DGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVD 653
+++ + +++ I ++ + T + +NVD
Sbjct: 1360 STNKDKKQTNTTPISTTTSSSSTTTA--SSSSNVD 1392
Score = 38 (18.4 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 123 SSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREK 162
SS K +E+S E+ N A + P + E+
Sbjct: 703 SSTTKTATEVSNEATEVSNEATSAAAATTTTPPQPPITEE 742
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 222 (83.2 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 58/193 (30%), Positives = 100/193 (51%)
Query: 457 KNLIN-KIYTDSAEAKIPAVLDYLETVIE----AGCKFLIFAHHQPMLDAIHQLFLKKKV 511
+NLIN I T+ ++ + L+ V+ G K LIF +++ + + +
Sbjct: 1084 ENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGM 1143
Query: 512 HCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
+R+DGGT R L+ F D D +LS +AGG+GL L A TVI + W P
Sbjct: 1144 KYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPH 1203
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG----HENSLE 626
+QA+DRAHRIGQ + V + L+ ++V++++ + KLE G+V+ ++++ E
Sbjct: 1204 QDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNKSTAE 1263
Query: 627 VSSSQIRSSPAKQ 639
+ +R+ K+
Sbjct: 1264 EQEAMLRALIEKE 1276
Score = 186 (70.5 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 80/299 (26%), Positives = 141/299 (47%)
Query: 133 SGYNVEIENLHPL---VQRAIASASAAPDLREKYDQIPAH-IESKLLPFQRDGVRFALQ- 187
SG +E ++ PL + I + A ++E+ + P+ + L +Q G+++ +
Sbjct: 736 SGRAIEPASVEPLDDEKREKIDYYNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWMVSL 795
Query: 188 HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLILTPSSLRLHWAAMIQQWLNI 241
+ +LADEMGLGKTIQ I++ T +V P L++ P S +W ++W
Sbjct: 796 FNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWA-- 853
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFK 299
PS + ++ G N+ V + R G F ++ +++ V+K + +L +
Sbjct: 854 -PS--IKKITYKGTPNQRK---VMQHDIRT----GNFQLVLTTFEYVIKDKGLLGRIKWV 903
Query: 300 IVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKN 359
+I DE H +KNA +K + TL + Y L+L+GTP + EL+ L + P ++ +
Sbjct: 904 HMIIDEGHRMKNANSK-LSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNS 962
Query: 360 VHEYGNRYCK--GGVFGIYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVK 409
V + + G + EE LH +++ ++RRLKKDV LP K
Sbjct: 963 VKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRP-FLLRRLKKDVEKDLPNK 1020
Score = 46 (21.3 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 619 DGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQ 658
D + ++++S S++ + P K K + V+D E Q
Sbjct: 1396 DDDDGNVDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQ 1435
Score = 42 (19.8 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 118 PVPFLSSAEKVLSEISGYNVEIENLHPLVQR 148
P PFL LS ++ +N+E E P +++
Sbjct: 830 PGPFLVIVP--LSTVTNWNLEFEKWAPSIKK 858
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 222 (83.2 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 58/193 (30%), Positives = 100/193 (51%)
Query: 457 KNLIN-KIYTDSAEAKIPAVLDYLETVIE----AGCKFLIFAHHQPMLDAIHQLFLKKKV 511
+NLIN I T+ ++ + L+ V+ G K LIF +++ + + +
Sbjct: 1084 ENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGM 1143
Query: 512 HCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570
+R+DGGT R L+ F D D +LS +AGG+GL L A TVI + W P
Sbjct: 1144 KYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPH 1203
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG----HENSLE 626
+QA+DRAHRIGQ + V + L+ ++V++++ + KLE G+V+ ++++ E
Sbjct: 1204 QDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNKSTAE 1263
Query: 627 VSSSQIRSSPAKQ 639
+ +R+ K+
Sbjct: 1264 EQEAMLRALIEKE 1276
Score = 186 (70.5 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 80/299 (26%), Positives = 141/299 (47%)
Query: 133 SGYNVEIENLHPL---VQRAIASASAAPDLREKYDQIPAH-IESKLLPFQRDGVRFALQ- 187
SG +E ++ PL + I + A ++E+ + P+ + L +Q G+++ +
Sbjct: 736 SGRAIEPASVEPLDDEKREKIDYYNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWMVSL 795
Query: 188 HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLILTPSSLRLHWAAMIQQWLNI 241
+ +LADEMGLGKTIQ I++ T +V P L++ P S +W ++W
Sbjct: 796 FNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWA-- 853
Query: 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFK 299
PS + ++ G N+ V + R G F ++ +++ V+K + +L +
Sbjct: 854 -PS--IKKITYKGTPNQRK---VMQHDIRT----GNFQLVLTTFEYVIKDKGLLGRIKWV 903
Query: 300 IVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKN 359
+I DE H +KNA +K + TL + Y L+L+GTP + EL+ L + P ++ +
Sbjct: 904 HMIIDEGHRMKNANSK-LSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNS 962
Query: 360 VHEYGNRYCK--GGVFGIYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVK 409
V + + G + EE LH +++ ++RRLKKDV LP K
Sbjct: 963 VKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRP-FLLRRLKKDVEKDLPNK 1020
Score = 46 (21.3 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 619 DGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQ 658
D + ++++S S++ + P K K + V+D E Q
Sbjct: 1396 DDDDGNVDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQ 1435
Score = 42 (19.8 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 118 PVPFLSSAEKVLSEISGYNVEIENLHPLVQR 148
P PFL LS ++ +N+E E P +++
Sbjct: 830 PGPFLVIVP--LSTVTNWNLEFEKWAPSIKK 858
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 357 (130.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 140/504 (27%), Positives = 245/504 (48%)
Query: 173 KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTP 224
+L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F P LI+ P
Sbjct: 486 ELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 544
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISY 283
S W + W P +VV + L N + + S TKR + + L I +Y
Sbjct: 545 LSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKFNAL--ITTY 599
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++GTP +
Sbjct: 600 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSHHRLLITGTPLQNSLK 657
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
EL+ L + P+ ++ ++ + KG G YQ S H+ L + V + ++K +
Sbjct: 658 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK-KDVEKSLP 713
Query: 404 AQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKACKSEEEVQS 451
A++ + R ++Q + + ++ + + R L +V K C ++
Sbjct: 714 AKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKP 773
Query: 452 LKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLK 508
+ E+ ++ + K+ +LD L T + E G + LIF+ MLD + +
Sbjct: 774 PEENERENGQEVLLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 832
Query: 509 KKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSW 567
K R+DG R+ + F + + +LS +AGG+G+ L +A TV+ + W
Sbjct: 833 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 892
Query: 568 TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-QVLDGHENS 624
P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q +D +
Sbjct: 893 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 952
Query: 625 -LEVSSSQIRSSPAKQKTLDSFLK 647
LE +S + S+P ++ L + LK
Sbjct: 953 VLENNSGRSNSNPFNKEELTAILK 976
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLD 643
D + ++R LE G V G E L+ +++ + + D
Sbjct: 1319 DYLLKLLRKSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKD 1361
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 210 (79.0 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/205 (27%), Positives = 100/205 (48%)
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC 513
F + I+ + K+ + L + G + L+F M+ + +
Sbjct: 667 FWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQY 726
Query: 514 IRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDL 572
+R+DG T P R AL+ +F + + +LS +AGG+GL L A TVI + W P
Sbjct: 727 LRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQD 786
Query: 573 IQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 632
+QA+DRAHRIGQ + V V+ L+ ++V++ + R KL +D E ++
Sbjct: 787 MQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLN-----VD--EKVIQAGKFDN 839
Query: 633 RSSPAKQKT-LDSFLKRCNNVDDSE 656
RS+ A+++ L++ +K N ++ E
Sbjct: 840 RSTGAERREILENIIKTENESEEDE 864
Score = 193 (73.0 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 77/297 (25%), Positives = 140/297 (47%)
Query: 173 KLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLILTPS 225
KL P+Q G+ + + + +LADEMGLGKTIQ IA T ++ P L++ P
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPL 424
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDV 285
S +W +W + + ++ + R F + + K N+ L +++
Sbjct: 425 STVPNWQNEFDKWA----ANVHLIAYKGPKETRKVFEPIIKSGKFNVLLT------TFEY 474
Query: 286 VLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIEL 345
V++ + +L +K +I DE H LKN K T L + Q LL++GTP ++ EL
Sbjct: 475 VIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEM-LNTRFQCQRRLLITGTPLQNKLPEL 533
Query: 346 FKQLEALYPDVYKNVHEYGNRY-CKGGVFGIYQGASNHE------ELHNLMKATVMIRRL 398
+ L L P ++ + + + G + E LH +++ ++RRL
Sbjct: 534 WALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLHKVLRP-FLLRRL 592
Query: 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455
KK+V ++LP K V D++ ++++ L++ ++ KG + K+ +SL+ T
Sbjct: 593 KKEVESELPDKMEFVVRCDMSA--LQKV--LYKHMQ--KGLLLDGKTNTGSKSLRNT 643
Score = 63 (27.2 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 413 QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEA-K 471
+ LD +KD R +Y L + + +K K ++ + K+ I K Y AE K
Sbjct: 255 RAMLD-EKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAGSLATKSYIRKEYDGVAEEDK 313
Query: 472 IPAVLD 477
+ ++LD
Sbjct: 314 VKSILD 319
Score = 38 (18.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 437 KGKIKACKSEEEVQSLKFTEKNLINKI 463
K K K K E+E + +EK+L KI
Sbjct: 1061 KEKEKEKKKEKEQEKSTDSEKDLKRKI 1087
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 357 (130.7 bits), Expect = 8.5e-28, Sum P(2) = 8.5e-28
Identities = 140/504 (27%), Positives = 245/504 (48%)
Query: 173 KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTP 224
+L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F P LI+ P
Sbjct: 496 ELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 554
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISY 283
S W + W P +VV + L N + + S TKR + + L I +Y
Sbjct: 555 LSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKFNAL--ITTY 609
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++GTP +
Sbjct: 610 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSHHRLLITGTPLQNSLK 667
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
EL+ L + P+ ++ ++ + KG G YQ S H+ L + V + ++K +
Sbjct: 668 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK-KDVEKSLP 723
Query: 404 AQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKACKSEEEVQS 451
A++ + R ++Q + + ++ + + R L +V K C ++
Sbjct: 724 AKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKP 783
Query: 452 LKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLK 508
+ E+ ++ + K+ +LD L T + E G + LIF+ MLD + +
Sbjct: 784 PEENERENGQEVLLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 842
Query: 509 KKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSW 567
K R+DG R+ + F + + +LS +AGG+G+ L +A TV+ + W
Sbjct: 843 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 902
Query: 568 TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-QVLDGHENS 624
P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q +D +
Sbjct: 903 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 962
Query: 625 -LEVSSSQIRSSPAKQKTLDSFLK 647
LE +S + S+P ++ L + LK
Sbjct: 963 VLENNSGRSNSNPFNKEELTAILK 986
Score = 42 (19.8 bits), Expect = 8.5e-28, Sum P(2) = 8.5e-28
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLD 643
D + ++R LE G V G E L+ +++ + + D
Sbjct: 1328 DYLLKLLRKSLEKKGAVTGGEEAKLKKRKPRVKKENKEPRLKD 1370
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 359 (131.4 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 144/513 (28%), Positives = 251/513 (48%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 476 PAYLGGENLELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQL 534
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 535 YGPFLIVVPLSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKF 591
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++
Sbjct: 592 NAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 647
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 648 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 704
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 705 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKC 763
Query: 443 CKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPML 499
C ++ + E+ +I + K+ +LD L T + E G + LIF+ ML
Sbjct: 764 CNHCYLIKPPEENERENGQEILLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRML 822
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAS 558
D + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 823 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 882
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG- 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 883 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 942
Query: 616 QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 943 QRMDTTGRTVLENNSGRSNSNPFNKEELTAILK 975
Score = 39 (18.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
D + ++R LE G V G E L+ +++
Sbjct: 1318 DYLLKLLRKSLEKEGAVTGGEEAKLKKRKPRVK 1350
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 360 (131.8 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 143/513 (27%), Positives = 251/513 (48%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 456 PAYLGGENLELRDYQLEGLNW-LAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQL 514
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 515 YGPFLIVVPLSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKF 571
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++
Sbjct: 572 NAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 627
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 628 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 684
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 685 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKC 743
Query: 443 CKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPML 499
C ++ + E+ ++ + K+ +LD L T + E G + LIF+ ML
Sbjct: 744 CNHCHLIKPPEENERENGQEVLLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRML 802
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAS 558
D + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 803 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 862
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG- 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 863 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 922
Query: 616 QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 923 QRMDTTGRTVLENNSGRSNSNPFNKEELTAILK 955
Score = 37 (18.1 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
D + ++R LE G V G E L +++
Sbjct: 1298 DYLLKLLRKSLEKEGAVTGGEEAKLTKRKPRVK 1330
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 223 (83.6 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 51/140 (36%), Positives = 75/140 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKK---VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544
+ LIF + MLD + + L+ V +R+DG P RQ VT+F + +L+
Sbjct: 1738 RVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLT 1797
Query: 545 MKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 604
GG+GL LT A TVIF E W P +QA DRAHRIGQ VNVY L+ +++ +
Sbjct: 1798 THVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIM 1857
Query: 605 DVVRSKLENLGQVLDGHENS 624
+ R K+ N+ + +N+
Sbjct: 1858 GLQRFKM-NVASTVVNQQNA 1876
Score = 192 (72.6 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 80/296 (27%), Positives = 132/296 (44%)
Query: 166 IPAHIESKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATC--------FR 214
IP I + L +Q++GV F ++ +L D+MGLGKT+Q I + F
Sbjct: 1350 IPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKLFE 1409
Query: 215 DVW-------PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSN 267
+ P LI+ PS+L HW QQ L+ + V S G I S
Sbjct: 1410 ESGSPKFAHVPSLIVCPSTLAGHW----QQELSTYAPFLKV--SAYVGPPAERAKIRSKM 1463
Query: 268 TKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
K ++ + SYD+ + L+ ++ + DE H +KNA+AK T A + ++
Sbjct: 1464 KKSDVV------VTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSL--RS 1515
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE--- 384
+ L+LSGTP + +EL+ + L P + R+ + +S+ E
Sbjct: 1516 YHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERG 1575
Query: 385 ---LHNLMKATV--MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEV 435
L + K + M+RRLK+DVLA LP K Q + D+++ + + +L +
Sbjct: 1576 TLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNI 1631
Score = 47 (21.6 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 26/103 (25%), Positives = 45/103 (43%)
Query: 416 LDVAEKDMRQIYALFRELEVVK--GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP 473
LD+ EKD+ Q A ++ ++ G ++ K +E V KF I+ + + +
Sbjct: 1749 LDMVEKDLLQ--ATMPDVTYMRLDGSVEPTKRQEAVT--KFNNDPSIDVLLLTTHVGGLG 1804
Query: 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRI 516
L +TVI + Q M D H++ KK V+ R+
Sbjct: 1805 LNLTGADTVIFVEHDWNPMRDLQAM-DRAHRIGQKKVVNVYRL 1846
Score = 39 (18.8 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 128 VLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIES 172
++ EIS Y + E +IASA YD++P + S
Sbjct: 960 IIDEISIYKIAKERQDIQCSASIASAMVT------YDKLPKKLNS 998
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 359 (131.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 144/513 (28%), Positives = 251/513 (48%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 474 PAYLGGENLELRDYQLEGLNW-LAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQL 532
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 533 YGPFLIVVPLSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LKF 589
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL++
Sbjct: 590 NAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 645
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 646 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 702
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 703 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKC 761
Query: 443 CKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPML 499
C ++ + E+ +I + K+ +LD L T + E G + LIF+ ML
Sbjct: 762 CNHCYLIKPPEENERENGQEILLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRML 820
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAS 558
D + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 821 DILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASAD 880
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG- 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 881 TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 940
Query: 616 QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 941 QRMDTTGRTILENNSGRSNSNPFNKEELTAILK 973
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
D + ++R LE G V G E L+ +++
Sbjct: 1315 DYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVK 1347
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 345 (126.5 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 130/473 (27%), Positives = 216/473 (45%)
Query: 173 KLLPFQRDGVRFALQHGGRIL---LADEMGLGKTIQAIAVATCFRDVW----PVLILTPS 225
KL +Q G+ + + R L LADEMGLGKT+Q IA + + P L++ P
Sbjct: 623 KLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPL 682
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII-SYD 284
S +W + +W P V+V R T R IP + +I S++
Sbjct: 683 STISNWVSEFARW---SPKLHVIVYKGKQDERRE--------TARTIPRNAFCVVITSFE 731
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
++K + L ++ +I DE H +KN +K + + + LLL+GTP + E
Sbjct: 732 YIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNR--LLLTGTPLQNDLGE 789
Query: 345 LFKQLEALYPDVYKNVHEYGNRY-----CKG-GVFGIYQGASNH--EELHNLMKATVMIR 396
L+ L L P ++ + + N + KG + + + S LH +++ ++R
Sbjct: 790 LWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVLRF-FLLR 848
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFR---------ELEVVKGKIKACKSEE 447
RLK DV +QLP K+ + + +++ + +L E G++K
Sbjct: 849 RLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNN 908
Query: 448 EVQSL-KFTEKNLINKIYTDSAEAKIPA-----VLDYLETVIEAGC-KFLIFAHHQPMLD 500
V+ L K + K D E I +D + T + A + LIF +++
Sbjct: 909 IVKQLQKICNHPYLFKDEWDINEDLIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVIN 968
Query: 501 AIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDD-VKAAVLSMKAGGVGLTLTAAST 559
+ + F K+ +R+DG T P R LV E+ D VLS AGG+G+ L A T
Sbjct: 969 LMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLSTHAGGLGMNLQTADT 1028
Query: 560 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612
VI + W P +QA+DR HRIGQ +SV+V+ L++ +++++ + KLE
Sbjct: 1029 VIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEEKILGRATDKLE 1081
Score = 207 (77.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 64/200 (32%), Positives = 102/200 (51%)
Query: 476 LDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQE 534
+D + T + A + LIF +++ + + F K+ +R+DG T P R LV E+
Sbjct: 943 MDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNR 1002
Query: 535 KDD-VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593
D VLS AGG+G+ L A TVI + W P +QA+DR HRIGQ +SV+V+ L
Sbjct: 1003 PDSPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRL 1062
Query: 594 LANDTVDDIVWDVVRSKLENLGQVLD-GHENSLEVSSSQIRSSPAKQ-------KTLDSF 645
++ +++++ + KLE +++ G N+ S+ Q R + +Q TLD
Sbjct: 1063 ISANSIEEKILGRATDKLEIDAKIIQAGMFNTH--SNDQERRAKLEQFLHGFPNNTLDEV 1120
Query: 646 ---LKRCNNV---DDSEHQQ 659
LK N + DD E +Q
Sbjct: 1121 PVDLKEINKLIARDDFEFKQ 1140
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 432 ELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCK 488
E+E + K + + E+E+Q L+ +K +I K ++ I + + + ++ E K
Sbjct: 272 EIETLT-KEEELEKEKEIQRLRDLQKPIIYKSCIPASVENIKGLPEAIHSINEREMK 327
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 222 (83.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 89/327 (27%), Positives = 152/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ I + T ++ P LI+
Sbjct: 722 INGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRLNGPYLII 781
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W + +W PS + + RS + S G FN++
Sbjct: 782 VPLSTLSNWVYELDKWA---PSIVKIAYKGTPSMRRSLVPQLRS---------GKFNVLI 829
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A LLL+GTP +
Sbjct: 830 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRLLLTGTPLQN 888
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 889 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 947
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ ++++ L+R ++ KG + SE++ + K
Sbjct: 948 LLRRLKKEVESQLPEKVEYVIKCDMSA--IQKV--LYRHMQG-KGILLTDGSEKDKKG-K 1001
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1002 GGAKTLMNTIMQLKKICNHPYMFQHIE 1028
Score = 180 (68.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 43/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R L+ +F E+ +LS +
Sbjct: 1070 RVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLSTR 1129
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1130 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1189
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1190 AKYKL-NVDQ 1198
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 242 (90.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 89/358 (24%), Positives = 177/358 (49%)
Query: 162 KYDQIPAHIES-KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR 214
+++ P++++ L +Q G+ + + ++G +LADEMGLGKT+Q IA+ +R
Sbjct: 170 RFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 229
Query: 215 DV-WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIP 273
++ P ++L P S +W ++W +P ++ + R+ F R+
Sbjct: 230 NIPGPHMVLVPKSTLYNWMNEFKRW--VPSLRVICFVGDKDA--RAAFI-------RDEM 278
Query: 274 LDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331
+ G +++ SY++V+K +++ +++ ++ DE+H +KN ++K + K+ L
Sbjct: 279 MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF--KSTNRL 336
Query: 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKA 391
LL+GTP + EL+ L L PDV+ + ++ + + G + E LH ++K
Sbjct: 337 LLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV---ERLHAVLKP 393
Query: 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVA--EKDMRQIYALF-----------RELEVVK- 437
++RR+K DV LP K+ +V+L ++ +++ I A F +L+++
Sbjct: 394 -FLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFVILAFFISENSNNSNKNHKLDILNV 452
Query: 438 ----GKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG-CKFL 490
+ K C + +Q K INK++ + I ++LDY +T IE C+ L
Sbjct: 453 IMLLREAKCCGASFCLQKKK-QNVAYINKVHINYCSKGIISMLDYCKTEIEQHRCRCL 509
Score = 155 (59.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 52/188 (27%), Positives = 95/188 (50%)
Query: 460 INKIYTDSAEAKIPAVLDYLETVIEAG-CKFLIFAHHQPML--DAIHQLFLKKKVH-CIR 515
INK++ + I ++LDY +T IE C+ L + + Q+ +K K + I+
Sbjct: 478 INKVHINYCSKGIISMLDYCKTEIEQHRCRCLCILNPLNTFFENGFLQIHIKHKPYSAIQ 537
Query: 516 IDG--GTPPASRQALVTEFQEKDDVKAA----------VLSMKAGGVGLTLTAASTVIFA 563
D ++ V +K+ ++A +LS +AGG+G+ L +A VI
Sbjct: 538 NDPFPWNEDDTKYLFVYIIYKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILY 597
Query: 564 ELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL----GQV 617
+ W P +QA DRAHRIGQ V V+ L+ ++TV++ + + ++ +L+++ G++
Sbjct: 598 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 657
Query: 618 LDGHENSL 625
+D N L
Sbjct: 658 IDQQSNKL 665
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 222 (83.2 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 94/344 (27%), Positives = 160/344 (46%)
Query: 154 SAAPDLREKY-DQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAV 209
S A + EK +Q + L +Q G+ + + + + +LADEMGLGKTIQ I++
Sbjct: 752 SIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISL 811
Query: 210 ATCFRD----VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265
T D + P LI+ P S +W ++W P+ V V+S G G ++
Sbjct: 812 VTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWA---PA--VGVVSYKGSPQ--GRRLLQ 864
Query: 266 SNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI 323
+ + FN++ +Y+ V+K + +L +K +I DE H +KN K T L
Sbjct: 865 NQMRAT-----KFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQV-LNT 918
Query: 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE 383
A Y LLL+GTP ++ EL+ L L P ++K+ + + + N E
Sbjct: 919 HYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEE 978
Query: 384 E-------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV 436
E LH +++ ++RRLKK+V QLP K + D++ ++++ L++ ++
Sbjct: 979 ETILIIRRLHKVLRP-FLLRRLKKEVEHQLPDKVEYIIKCDMSA--LQRV--LYKHMQS- 1032
Query: 437 KGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480
KG + SE+ K K L+N I P + ++E
Sbjct: 1033 KGVLLTDGSEKGKHG-KGGAKALMNTIVQLRKLCNHPFMFQHIE 1075
Score = 189 (71.6 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 51/173 (29%), Positives = 89/173 (51%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F + I ++ +R+DG T R L+ +F K DV +LS +
Sbjct: 1116 RVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTR 1175
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L A TV+ + W P +QA+DRAHRIGQ + V V L+ ++V++ +
Sbjct: 1176 AGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAA 1235
Query: 607 VRSKLENLGQVLDGHENSLEVSSSQIRSSPA-KQKTLDSFLKRCNNVDDSEHQ 658
R KL +D E ++ +S+ + +Q+ L + L + +N ++ E++
Sbjct: 1236 ARYKLN-----MD--EKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENE 1281
Score = 39 (18.8 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 36 SPSYKVEALPQGSRTLPLSVAPA-PKG 61
SP Y+ +P + T P V+P P G
Sbjct: 100 SP-YQTHGMPPNAPTQPCIVSPGGPPG 125
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 342 (125.4 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 125/478 (26%), Positives = 224/478 (46%)
Query: 161 EKYDQIPAHIESKLLPFQRDGV---RFALQHGGRILLADEMGLGKTIQAIA-VATCFRD- 215
+++D P + L +Q +G+ R++ ++LADEMGLGKTIQ+IA +A+ F +
Sbjct: 212 KQFDLTPEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEEN 271
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLD 275
+ P L++ P S +W W P +V+ + + R D
Sbjct: 272 LSPHLVVAPLSTIRNWEREFATWA--PHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFD 329
Query: 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSG 335
L + +Y++V ++L + +I DE H LKN ++K ++ K + +LL+G
Sbjct: 330 VL--LTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSK--HIVLLTG 385
Query: 336 TPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMI 395
TP + ELF + L D + ++ ++ + LH ++ A ++
Sbjct: 386 TPLQNNLNELFALMHFLDADKFGSLEKFQD----------INKEEQISRLHQML-APHLL 434
Query: 396 RRLKKDVLA-QLPVKRRQQVFLDVAEKDMRQIY-ALFRELEVVKGKIKACKSEEEVQSLK 453
RRLKKDVL ++P K+ + +D++ + +++Y A+ V K + K + L+
Sbjct: 435 RRLKKDVLKDKVPPKKELILRVDMSSQQ-KEVYKAVITNNYQVLTKKRDAKISNVLMKLR 493
Query: 454 --FTEKNLI----------NKIYTDSAEA--KIPAVLDYLETVIEAGCKFLIFAHHQPML 499
+ L+ N+ +T EA K+ + + + E G + LI+ Q L
Sbjct: 494 QVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTL 553
Query: 500 DAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAAS 558
+ F K + RIDG RQ + F ++ + +LS +AGG+G+ L A
Sbjct: 554 YLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATAD 613
Query: 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL 614
TVI + W P +QA R HR+GQ + V +Y L+ TV++ + ++ ++K LE+L
Sbjct: 614 TVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHL 671
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 216 (81.1 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 58/184 (31%), Positives = 92/184 (50%)
Query: 434 EVVKGKIKACKSEEEVQ-SLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIF 492
EV + KI + +V+ S+ F +K L+ Y D + + A L L+ + G + LIF
Sbjct: 1334 EVAENKIDNPFHKAQVKLSIAFPDKTLLQ--Y-DCGKLQKLATL--LQELTSQGHRALIF 1388
Query: 493 AHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGL 552
+LD + Q +R+DG T RQ L +F + +LS ++GG+G+
Sbjct: 1389 TQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGI 1448
Query: 553 TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK-- 610
LT A TVIF + W P Q +DR HRIGQV V++Y ++ T++ + K
Sbjct: 1449 NLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQ 1508
Query: 611 LENL 614
L+N+
Sbjct: 1509 LDNV 1512
Score = 172 (65.6 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 61/198 (30%), Positives = 94/198 (47%)
Query: 166 IPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAI---AVATCFRDVW-P 218
IP+ + L P+Q+ G+ + A + +LADEMGLGKTIQ I A C W P
Sbjct: 815 IPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS--QLGGSNRSGFTIVSSNTKRNIPLDG 276
LI+ P+S+ L+W +++ P +++ Q R G+ N P
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFA--PGFKVLTYYGSPQQRAQKRKGW---------NKPDAF 923
Query: 277 LFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
I SY +V++ Q + +I DE+H +KN ++ R A L + LLL+GT
Sbjct: 924 HVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNF--NTENRLLLTGT 981
Query: 337 PALSRPIELFKQLEALYP 354
P + +EL+ L L P
Sbjct: 982 PLQNNLMELWSLLYFLMP 999
Score = 62 (26.9 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
LH +++ ++RRLKKDV Q+P K V+ ++++ R +Y
Sbjct: 1061 LHQVLRP-YLLRRLKKDVEKQMPGKYEHIVYCRLSKRQ-RFLY 1101
Score = 51 (23.0 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 303 ADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHE 362
+D +++ Q R I +K ++ + L+ +PI L L + + E
Sbjct: 1224 SDPINYVSYYQRLRREEQAEIKEKLEHVVYLNNLRCGRKPIYGESLLRLLTVNAHDFSDE 1283
Query: 363 YGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAE 420
N+YC + G ++ E ++++ + +K D L +P+ +Q++ +VAE
Sbjct: 1284 PYNKYCLT-LSGRVDKMNDTIEKYSIITPAAVALDMK-DQL--IPISTKQRILHEVAE 1337
Score = 42 (19.8 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 2 EVDDEWEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKG 61
E D+ S EL+ + +IA +D VE + GS+ + + +G
Sbjct: 769 ESDESMNSSDRELEVNGNGKIDKIAS------TDEDDSNVEIV-NGSKVKDVPIPSLLRG 821
Query: 62 SLGDFSKEQVPKLSVKFFLHTSGNIA 87
+L + K+ + L+ + +T+G +A
Sbjct: 822 TLRPYQKQGLNWLASLYNNNTNGILA 847
Score = 39 (18.8 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 362 EYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLD 417
E GNR G + + + +S+ ++ N + I +LK +V+A + + Q FL+
Sbjct: 284 EDGNR-STGRLIQL-KDSSSSSKIINFDPTPLEIIQLKDEVIAAPKLTEKLQNFLN 337
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 339 (124.4 bits), Expect = 3.3e-27, P = 3.3e-27
Identities = 125/470 (26%), Positives = 218/470 (46%)
Query: 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FRDV-WPV 219
PA I+ KL +Q G+ + + ++G +LADEMGLGKT+Q I++ +R + P
Sbjct: 187 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 246
Query: 220 LILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN 279
+++ P S +W I+++ P ++ + LG + + + + G F+
Sbjct: 247 MVVAPKSTLGNWMNEIRRFC--P---VLRAVKFLGNPEER------RHIREELLVAGKFD 295
Query: 280 II--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
I S+++ +K + L +++ +I DE+H +KN + + T+ + Y LL++GTP
Sbjct: 296 ICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSL-LSKTMRLFS-TNYRLLITGTP 353
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397
+ EL+ L L P+V+ + + + + G ++LH +++ ++RR
Sbjct: 354 LQNNLHELWALLNFLLPEVFSSAETFDEWF---QISGENDQQEVVQQLHKVLRP-FLLRR 409
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIY--ALF-RELEVVKGKIKACKSEEEVQSLK- 453
LK DV LP K+ + L V M++ Y AL ++LEVV G + + L+
Sbjct: 410 LKSDVEKGLPPKK--ETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRK 467
Query: 454 -FTEKNLINKI-----YTDS----AEAKIPAVLD-YLETVIEAGCKFLIFAHHQPMLDAI 502
L YT A +LD L + + + LIF+ +LD +
Sbjct: 468 CCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDIL 527
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVI 561
+ + RIDG T R A + + + K +LS +AGG+G+ L A VI
Sbjct: 528 EDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVI 587
Query: 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
+ W P +QA+DRAHRIGQ V V+ + ++ V + KL
Sbjct: 588 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKL 637
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 337 (123.7 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 138/462 (29%), Positives = 216/462 (46%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVAT-CF 213
L+++ I H +L +Q +G+ + L H G +LADEMGLGKTIQ I+ F
Sbjct: 464 LKKQPSYIGGHEGLELRDYQLNGLNW-LAHSWCKGNSCILADEMGLGKTIQTISFLNYLF 522
Query: 214 RD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTK 269
+ P L++ P S W IQ W + VV L + N + TK
Sbjct: 523 HEHQLYGPFLLVVPLSTLTSWQREIQTWAS--QMNAVVYLGDINSRNMIRTHEWMHPQTK 580
Query: 270 RNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA 327
R L FNI+ +Y+++LK + L N+ + DE+H LKN + TL I K+
Sbjct: 581 R---LK--FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSL-LYKTL-IDFKS 633
Query: 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387
+ LL++GTP + EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 634 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEP 690
Query: 388 LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYA--LFRELEVVKGKIKACKS 445
+ +RR+KKDV LP K Q + ++++ +Q Y L R + + K S
Sbjct: 691 FL-----LRRVKKDVEKSLPAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSKGSTS 744
Query: 446 E--EEVQSLK------FTEKNLINKIYTDSAEA-----KIPAVLDYLETVI----EAGCK 488
+ LK + K N + + EA + L L+ ++ E G +
Sbjct: 745 GFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNR 804
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQE--KDDVKAAVLSMK 546
LIF+ MLD + + ++ R+DG RQAL F +D +LS +
Sbjct: 805 VLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIGELRRQAL-DHFNAXGSEDF-CFLLSTR 862
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588
AGG+G+ L +A TV+ + W P + +QA+ RAHRIGQ V
Sbjct: 863 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 207 (77.9 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 55/192 (28%), Positives = 99/192 (51%)
Query: 475 VLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD + ++A G + LIF ++D + + +R+DG T R L+ F
Sbjct: 1091 LLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFN 1150
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
D + +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ + V +
Sbjct: 1151 APDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1210
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDG----HENSLEVSSSQIRS----SPAKQKTLDS 644
L+ ++V++++ + KL+ G+V+ ++++ E + +RS ++K +S
Sbjct: 1211 LITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRES 1270
Query: 645 FLKRCNNVDDSE 656
++ + DSE
Sbjct: 1271 GVEEEEELKDSE 1282
Score = 192 (72.6 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 67/232 (28%), Positives = 115/232 (49%)
Query: 193 LLADEMGLGKTIQAIAVATCFRDV----WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVV 248
+LADEMGLGKTIQ I++ T ++ P L++ P S +W++ +W P+ +
Sbjct: 789 ILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWA---PT--LR 843
Query: 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADES 306
+S G N K+ G F+++ +++ ++K + +L + +I DE
Sbjct: 844 TISFKGSPNER-------KAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEG 896
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H +KNAQ+K + TL A Y L+L+GTP + EL+ L + P ++ +V +
Sbjct: 897 HRMKNAQSK-LSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEW 955
Query: 367 YCK--GGVFGIYQGASNHEE-------LHNLMKATVMIRRLKKDVLAQLPVK 409
+ G + + EE LH +++ ++RRLKKDV +LP K
Sbjct: 956 FNTPFANTGGQDKIELSEEETLLVIRRLHKVLRP-FLLRRLKKDVEKELPDK 1006
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 657 HQQKLKYRKL 666
+QQ LKYR+L
Sbjct: 1023 YQQMLKYRRL 1032
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 230 (86.0 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 55/183 (30%), Positives = 93/183 (50%)
Query: 447 EEVQSLKFTEKNLINKIYTDS--AEAKIPAVLD--YLETVIEAGCKFLIFAHHQPMLDAI 502
E+ KF +++N+I +S + KI A+++ YL + K ++F+ MLD I
Sbjct: 665 EDFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLI 724
Query: 503 HQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562
H K +C+++DGG P +R A + F ++ ++S+KAGGV L LT AS V
Sbjct: 725 HWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFM 784
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 622
+ W QA DR HRIGQ + V L ++++ + ++ K + + +D E
Sbjct: 785 MDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDE 844
Query: 623 NSL 625
+L
Sbjct: 845 KAL 847
Score = 167 (63.8 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 62/211 (29%), Positives = 94/211 (44%)
Query: 156 APDLREKYDQIPAHIESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVA 210
AP ++ +Q P + LLPFQR+GV + + GG IL ADEMG+GKTIQ IA+
Sbjct: 238 APREVKQIEQ-PKELVLNLLPFQREGVYWLKRQEDSSFGGGIL-ADEMGMGKTIQTIALL 295
Query: 211 TCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVV--LSQLGGSNRSGFTIV--SS 266
P L++ P + W I N S + + G S + +V S
Sbjct: 296 LSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYGQARDISGEELSSYDVVLTSY 355
Query: 267 NTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK 326
N ++ + V+K +++L F +I DE+H +K+ A + +
Sbjct: 356 NVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGL--R 413
Query: 327 AQYALLLSGTPALSRPIELFKQLEALYPDVY 357
+ LSGTP +R ELF L L D +
Sbjct: 414 TTRKICLSGTPLQNRIGELFSLLRFLRADPF 444
Score = 38 (18.4 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 149 AIASASAAPDLREKYDQIPAH 169
A AS+SA+ R + IP+H
Sbjct: 193 ARASSSASSSSRTQAKSIPSH 213
Score = 37 (18.1 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 16/72 (22%), Positives = 30/72 (41%)
Query: 4 DDEWEFSAEELDFLEREALQ-QIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGS 62
DDE + A +D E E ++ + P S + S + E++P ++ V+ S
Sbjct: 140 DDESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDE-ESIPLSYQSKRRRVSARASSS 198
Query: 63 LGDFSKEQVPKL 74
S+ Q +
Sbjct: 199 ASSSSRTQAKSI 210
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 221 (82.9 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 787 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 834
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 893
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 952
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 953 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 1006
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1007 GGAKTLMNTIMQLRKICNHPYMFQHIE 1033
Score = 184 (69.8 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1075 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1134
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1135 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1194
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1195 AKYKL-NVDQ 1203
Score = 40 (19.1 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 127 KVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESK---LLPFQR 179
++L E Y ++ H + + S PDLR K A +E K LL FQR
Sbjct: 348 EILQERE-YRLQARIAHRIQELESLPGSLPPDLRTK-----ATVELKALRLLNFQR 397
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 203 (76.5 bits), Expect = 4.8e-27, Sum P(3) = 4.8e-27
Identities = 51/182 (28%), Positives = 91/182 (50%)
Query: 450 QSLKFTEKN-LINKIYTDS--AEAKIPAVLDYLETVIE--AGCKFLIFAHHQPMLDAIHQ 504
Q + T+KN +IN+I ++ + K+ ++ L+ + + K +IF+ ML I
Sbjct: 791 QDQEMTKKNSIINRIRMENWTSSTKMEMLVHSLQKLRSDNSSHKSIIFSQFTGMLQLIEW 850
Query: 505 LFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564
+ + + +DG PA R A + F DV+ ++S+KAGGV L LT AS V +
Sbjct: 851 RLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVECFLVSLKAGGVALNLTEASRVFIVD 910
Query: 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 624
W P Q+ DR HRIGQ V + L D+++ + ++ K + + ++ + +
Sbjct: 911 PWWNPAAEWQSADRVHRIGQTRPVVITRLCIEDSIESRIVELQEKKTKMINSTVNSDDVA 970
Query: 625 LE 626
L+
Sbjct: 971 LD 972
Score = 180 (68.4 bits), Expect = 4.8e-27, Sum P(3) = 4.8e-27
Identities = 66/239 (27%), Positives = 110/239 (46%)
Query: 138 EIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRF--ALQH----GGR 191
++E HP ++ A A + P +I L PFQ G+ + A++ GG
Sbjct: 347 KLEKNHPYLKTLWADFEAKAVVDPPPASQPTNISRNLKPFQLQGLAWMKAMEQTEWKGG- 405
Query: 192 ILLADEMGLGKTIQAIAVATCFRDVWPV----LILTPSSLRLHWAAMIQQWLNIPPSEIV 247
LL DEMGLGKTIQA+++ D WP L+L P + W + IQ + IV
Sbjct: 406 -LLGDEMGLGKTIQAVSLV--MSD-WPAKKPSLVLAPPVALMQWMSEIQSYTEGTLKTIV 461
Query: 248 -----VVLSQLGGSNRSGFTIV--SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKI 300
++ + G+ ++ S N+ +++ + D + K +++L S +F
Sbjct: 462 YHGSNAKTKKMTKAELKGYDVIIMSYNSLQSMYAKQEKGVSKKDGIYKEKSLLHSIDFHR 521
Query: 301 VIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKN 359
VI DE+H++K+ + A L + K Y L+GTP +R E F + L + + N
Sbjct: 522 VILDEAHYIKSRTTMTSKACLAL--KTTYRWCLTGTPLQNRIGEFFSLVRFLKIEPFAN 578
Score = 56 (24.8 bits), Expect = 4.8e-27, Sum P(3) = 4.8e-27
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 377 QGASNHEELHNLMKATVMIRRLKKDVL--AQLPVKR---RQQVFLDVAEKDM 423
+GA +L L+ + +M+RR KKD + +LP+K +Q F +V EKD+
Sbjct: 629 KGAEAFRKLR-LLTSKIMLRRQKKDHMDSMELPLKEIIIDRQFFGEV-EKDL 678
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 221 (82.9 bits), Expect = 5.3e-27, Sum P(3) = 5.3e-27
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 785 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 832
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 833 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 891
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 892 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 950
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 951 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 1004
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1005 GGAKTLMNTIMQLRKICNHPYMFQHIE 1031
Score = 184 (69.8 bits), Expect = 5.3e-27, Sum P(3) = 5.3e-27
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1073 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1132
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1133 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1192
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1193 AKYKL-NVDQ 1201
Score = 40 (19.1 bits), Expect = 5.3e-27, Sum P(3) = 5.3e-27
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 127 KVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESK---LLPFQR 179
++L E Y ++ H + + S PDLR K A +E K LL FQR
Sbjct: 346 EILQERE-YRLQARIAHRIQELESLPGSLPPDLRTK-----ATVELKALRLLNFQR 395
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 215 (80.7 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
Identities = 82/302 (27%), Positives = 137/302 (45%)
Query: 162 KYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQAIA-VATCFR 214
K+D+ P +I++ L P+Q +G+ RF+ G +LADEMGLGKT+Q I + + ++
Sbjct: 616 KFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYK 675
Query: 215 DVW----PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SNRSGF---T 262
+ P L+ P S ++W + W P +V N F
Sbjct: 676 EQGHSKGPYLVSAPLSTIINWEREFEMWA--PDFYVVTYTGDKESRSVIRENEFSFEDNA 733
Query: 263 IVSSNTKRNIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTA 318
I S + + F+++ SY+++ Q +L S + ++ DE+H LKN Q+K
Sbjct: 734 IRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFR 793
Query: 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQG 378
K Y LLL+GTP + ELF L L P+ + N+ + F
Sbjct: 794 VLNSY--KIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE------FADISK 845
Query: 379 ASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YALFRELEVVK 437
++LH+L+ M+RRLK DV +P K V +++++ + + L R E +
Sbjct: 846 EDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALN 904
Query: 438 GK 439
K
Sbjct: 905 SK 906
Score = 183 (69.5 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
Identities = 45/145 (31%), Positives = 71/145 (48%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L+ + + G + LIF+ MLD + + RIDGG RQ
Sbjct: 954 SSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQE 1013
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ
Sbjct: 1014 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1073
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1074 KVMIYRFVTRASVEERITQVAKRKM 1098
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 209 (78.6 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 115/454 (25%), Positives = 199/454 (43%)
Query: 93 DPVLVSAFRKIPKATWNAKERL--WTFPVPFLSSAEKVLSEISGYNV-EIENLH--PLVQ 147
D +L A K P L W +P+ S ++ ++ + E E L P ++
Sbjct: 300 DRILEVAHTKDPDTGEEVTHYLVKWC-SLPYEESTWELEEDVDPVKIKEFEALQIPPEIK 358
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTI 204
AS + EK + ++L +Q +G+ + L + +LADEMGLGKTI
Sbjct: 359 HMERPASESWQKLEKSREYKN--SNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTI 416
Query: 205 QAIA-VATCF-RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGF 261
Q+I ++ F + P LI+ P S +W + W + + IV SQ+ +
Sbjct: 417 QSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEM--NAIVYHGSQISRQMIQQY 474
Query: 262 TIVSSNTKRNIPLDGLFN----IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317
+V +T+ N PL G+F I +++++L L ++ V+ DE+H LKN K
Sbjct: 475 EMVYRDTQGN-PLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLL 533
Query: 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQ 377
L ++ ++ +LL+GTP + ELF L L P + + + FG +
Sbjct: 534 EG-LKLMA-LEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEE------FGDLK 585
Query: 378 GASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY---ALFRELE 434
++L +++K +M+RRLK DV L K Q+ ++V ++++ Y L +
Sbjct: 586 TEEQVKKLQSILKP-MMLRRLKDDVEKNLAPK--QETIIEVELTNIQKKYYRAILEKNFS 642
Query: 435 VVKGKIKACKSEEEVQSLKFTEK--N---LIN----KIYTDSAEAKIPAVLDY-LETVIE 484
+ + ++ K N LIN KI D + P D+ L+ +I+
Sbjct: 643 FLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQ 702
Query: 485 AGCKFLIFAHHQPMLDAI-HQ-LFLKKKVHCIRI 516
A K ++ P L A H+ L + V C+ I
Sbjct: 703 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDI 736
Score = 196 (74.1 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 703 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 762
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 763 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 822
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 823 AVKVYRLITRNSYEREMFDKASLKL 847
Score = 45 (20.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +WD++ + Q L H +S+ R K+ L
Sbjct: 1064 VKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSG---LSAPVPRGRKGKKTKNQMLLPEI 1120
Query: 650 NNVD 653
N D
Sbjct: 1121 KNAD 1124
Score = 37 (18.1 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L ++ + S S+ AK + S + ++DD QK
Sbjct: 899 EDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 947
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 221 (82.9 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 90/327 (27%), Positives = 151/327 (46%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMGLGKTIQ IA+ T + P LI+
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN++
Sbjct: 787 VPLSTLSNWTYEFDKWA---PSVVKISYKGTPAMRRSLVPQLRS---------GKFNVLL 834
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 893
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 952
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 953 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 1006
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1007 GGAKTLMNTIMQLRKICNHPYMFQHIE 1033
Score = 184 (69.8 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1075 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1134
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1135 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1194
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1195 AKYKL-NVDQ 1203
Score = 40 (19.1 bits), Expect = 5.5e-27, Sum P(3) = 5.5e-27
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 127 KVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESK---LLPFQR 179
++L E Y ++ H + + S PDLR K A +E K LL FQR
Sbjct: 348 EILQERE-YRLQARIAHRIQELESLPGSLPPDLRTK-----ATVELKALRLLNFQR 397
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 199 (75.1 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 82/275 (29%), Positives = 133/275 (48%)
Query: 166 IPAHIESKLLPFQRDGVRF------ALQHGGRI--LLADEMGLGKTIQAIAVA-TCFRD- 215
+ +I + L P QR+G+ F ++ GR +LADEMGLGKT+Q I++ T R
Sbjct: 295 VDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQG 354
Query: 216 VW---PVL----ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
V+ PVL I+TP SL +W Q+WL SE + V + F +SS
Sbjct: 355 VYGCKPVLKRALIVTPGSLVKNWKKEFQKWLG---SERIKVFTVDQDHKVEEF--ISS-- 407
Query: 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
PL + IISY+++L+ + + + F ++I DE H LKN+ K T A + +
Sbjct: 408 ----PLYSVM-IISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNL--SCE 460
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE---- 384
++L+GTP + E + +E + P V ++ Y Y + V A+ E+
Sbjct: 461 RRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGE 520
Query: 385 --LHNLMKAT-VMIRRLKKDVLAQ-LPVKRRQQVF 415
L + T + I R ++V+ + LP K+ +F
Sbjct: 521 KRAAELTRLTGLFILRRTQEVINKFLPPKKENIIF 555
Score = 191 (72.3 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 439 KIKAC--KSEEEVQSLKF---TE---KNLINKIYTDSAEAKIPAVLDYLETVIEAGC--K 488
K K C KS+E V+S + T+ ++ + +++ K+ ++ L + E +
Sbjct: 610 KEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSER 669
Query: 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKA 547
++ +++ L+ + + R+DG TP + RQ +V F K +LS KA
Sbjct: 670 VVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKA 729
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GGVGL L AS +I ++ W P IQA R R GQ +V++Y LL T+++ ++
Sbjct: 730 GGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQ 789
Query: 608 RSKLENLGQVLDGHENS--LEVSSSQIRSS---PAKQKTLDSFLKRCNNVDDSEHQ 658
SK + G V+D + S + S ++R+ + L C+ + + +HQ
Sbjct: 790 ISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSSCVTHDLLECDCMGNKDHQ 845
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 216 (81.1 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 63/211 (29%), Positives = 103/211 (48%)
Query: 446 EEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQ 504
+ E S+K ++ + K+ A K+ ++D L ++ G K LIF+ +LD +
Sbjct: 812 QSETSSIKDKDQ-IFQKLI--QASGKL-VLIDKLLPKLKLGNHKVLIFSQMVSVLDILDD 867
Query: 505 LFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFA 563
+ RIDG RQA + F + D D +L +AGG+G+ LTAA TVI
Sbjct: 868 YLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIF 927
Query: 564 ELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL-------ENLGQ 616
+ W P + +QA+ R HRIGQ V VY L+ +T + +++D KL +
Sbjct: 928 DSDWNPQNDLQAQARCHRIGQDKMVKVYRLVTKNTYERLMFDKASKKLGLDRAVLTKMNS 987
Query: 617 VLDGHENSLEVSSSQIRSSPAKQKTLDSFLK 647
+ D + + SSS + ++T++S LK
Sbjct: 988 LADSNNGNNSSSSSTTKDELPDKETINSLLK 1018
Score = 183 (69.5 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 75/289 (25%), Positives = 128/289 (44%)
Query: 161 EKYDQIPAHIE--SKLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATCFRD 215
+K DQ P + +KL P+Q +G+ F +L DEMGLGKT+Q++++ R
Sbjct: 494 KKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRK 553
Query: 216 VW----PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGS--NRSGFTIVSSNTK 269
V P L++ P + HW + W ++ + +V S G F + +
Sbjct: 554 VHGIRGPFLVVAPLTTIPHWKREFENWTDM--NALVYHDSGAGRPICRNYEFYLKDKDGG 611
Query: 270 RNIPLDGL------FNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATL 321
G FN++ +Y++ + + L +K ++ DE+H LKN K T
Sbjct: 612 GGGASGGASGKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELR 671
Query: 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASN 381
+ LLL+GTP + EL+ L L P + N+ ++ Y G + +S
Sbjct: 672 SY--SFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFSNLDQFLLEY------GDLKESSQ 723
Query: 382 HEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLD---VAEKDMRQIY 427
E L ++K ++RR+K+ V + K V ++ V +K R IY
Sbjct: 724 VESLQAILKP-YLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIY 771
Score = 44 (20.5 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 606 VVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKR 648
V+ +++ L + +D +N LE S + K+K + LK+
Sbjct: 1501 VLSHRVKRLLRTMDFFKNKLEKESKNEKKKIEKEKKQEEKLKK 1543
Score = 38 (18.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 621 HENSLEV-SSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKL 661
+ +S+E SSS SSP+ D+ +++ D + +K+
Sbjct: 1270 NSDSIEKESSSSSSSSPSSNINQDNSIEKKEENDTTVKDEKM 1311
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 206 (77.6 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 451 SLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK 510
++ F +K+L+ Y D + + A+L L+ + + G + LIF +LD + Q FL
Sbjct: 1232 TIAFPDKSLLQ--Y-DCGKLQKLAIL--LQQLKDNGHRALIFTQMTKVLDVLEQ-FLNYH 1285
Query: 511 VHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTP 569
+ +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P
Sbjct: 1286 GYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1345
Query: 570 GDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL 614
Q +DR HRIGQ V++Y ++ T++ + K L+N+
Sbjct: 1346 AMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNV 1392
Score = 189 (71.6 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 79/289 (27%), Positives = 133/289 (46%)
Query: 166 IPAHIESKLLPFQRDGVRF-ALQHGGRI--LLADEMGLGKTIQAI---AVATCFRDVW-P 218
+P+ + L +Q+ G+ + A + +LADEMGLGKTIQ I A C ++ W P
Sbjct: 688 VPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGP 747
Query: 219 VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS--QLGGSNRSGFTIVSSNTKRNIPLDG 276
LI+ P+S+ L+W +++ P +++ Q R G+ N P
Sbjct: 748 HLIVVPTSVLLNWEMEFKRFA--PGFKVLTYYGSPQQRKEKRKGW---------NKPDAF 796
Query: 277 LFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336
I+SY +V++ Q+ ++ ++ DE+H +KN ++ R A L Q LLL+GT
Sbjct: 797 HVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNF--NTQRRLLLTGT 854
Query: 337 PALSRPIELFKQLEALYPDVY---KNVHEYGNRYCKGGVFG-----IYQGASNHEE---- 384
P + EL+ L L P K V + + FG I + N +
Sbjct: 855 PLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKET 914
Query: 385 ------LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427
LH +++ ++RRLK DV Q+P K V+ ++++ R +Y
Sbjct: 915 KKTVAKLHQVLRP-YLLRRLKADVEKQMPAKYEHIVYCKLSKRQ-RFLY 961
Score = 53 (23.7 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 522 PASRQALVTEFQEKDDVKAAVLSMK 546
P + L+ + +++DDVKAA L+M+
Sbjct: 1439 PRQLERLLAQAEDEDDVKAANLAMR 1463
Score = 48 (22.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 417 DVAEKDMRQIYALFRELEVVKGKIKACK---SEEEVQSLKF---TEKNLINKIYTDSAE 469
DVA KD RQ+ L + E + +KA E E+ + F TEK N+ + AE
Sbjct: 1433 DVAAKDPRQLERLLAQAED-EDDVKAANLAMREVEIDNDDFDESTEKKAANEEEENHAE 1490
Score = 41 (19.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 53 LSVA--PAP---KGSLGDFSKEQVPKLSVKFFLHTSGNIAAKF----TYDPVLVSAFRKI 103
LSV P P +G+L + K+ + L+ + HT+G +A + T + + A+
Sbjct: 681 LSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLAC 740
Query: 104 PKATW 108
K W
Sbjct: 741 EKENW 745
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 357 (130.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 144/514 (28%), Positives = 251/514 (48%)
Query: 167 PAHI--ES-KLLPFQRDGVRFALQHG-----GRILLADEMGLGKTIQAIA-VATCFRD-- 215
PA++ E+ +L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 462 PAYLGGENLELRDYQLEGLNW-LAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQ 520
Query: 216 -VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIP 273
P LI+ P S W + W P +VV + L N + + S TKR +
Sbjct: 521 LYGPFLIVVPLSTLTSWQREFEIWA--PEINVVVYIGDLMSRNTIREYEWIHSQTKR-LK 577
Query: 274 LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLL 333
+ L I +Y+++LK + +L S N+ + DE+H LKN + TL I K+ + LL+
Sbjct: 578 FNAL--ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLI 633
Query: 334 SGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393
+GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 634 TGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRV 690
Query: 394 MIRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIK 441
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 691 K-KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKK 749
Query: 442 ACKSEEEVQSLKFTEKNLINKIYTD--SAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPM 498
C ++ + E+ +I + K+ +LD L T + E G + LIF+ M
Sbjct: 750 CCNHCYLIKPPEENERENGQEILLSLIRSSGKL-ILLDKLLTRLRERGNRVLIFSQMVRM 808
Query: 499 LDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAA 557
LD + + K R+DG R+ + F + + +LS +AGG+G+ L +A
Sbjct: 809 LDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASA 868
Query: 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG 615
TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L
Sbjct: 869 DTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLV 928
Query: 616 -QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
Q +D + LE +S + S+P ++ L + LK
Sbjct: 929 IQRMDTTGRTVLENNSGRSNSNPFNKEELTAILK 962
Score = 39 (18.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 633
D + ++R LE G V G E L+ +++
Sbjct: 1305 DYLLKLLRKSLEKEGAVTGGEEAKLKKRKPRVK 1337
Score = 37 (18.1 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 138 EIENLHPLVQRAIASASAAPDLREKY 163
E+ + +V+R I + AP +Y
Sbjct: 376 ELNKQYQIVERVIGNRKPAPSNEPEY 401
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 211 (79.3 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 55/178 (30%), Positives = 89/178 (50%)
Query: 435 VVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAH 494
++ G +A ++ + + E+ L +K A K+ + L + + G K LIF+
Sbjct: 1487 LINGAEEAIMNDFRLAHPDWDEETLAHKALIQ-ASGKVVLIEKLLPKLRKDGHKVLIFSQ 1545
Query: 495 HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEF-QEKDDVKAAVLSMKAGGVGLT 553
+LD + + + RIDG RQA + F +E D +L +AGG+G+
Sbjct: 1546 MVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGIN 1605
Query: 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
LTAA TVI + W P + +QA+ R HRIGQ V VY L+ ++T + ++D KL
Sbjct: 1606 LTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKL 1663
Score = 200 (75.5 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 72/268 (26%), Positives = 126/268 (47%)
Query: 172 SKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCFRDVW---PVLILTPS 225
+ L +Q +GV + L + +LADEMGLGKT+Q I + D P L++ P
Sbjct: 1195 NSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDYGIHGPFLVVVPL 1254
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIV-------SSNTKRN-IPLDGL 277
S +W + W ++ + IV S + + + N K+N + +D L
Sbjct: 1255 STIQNWVREFETWTDM--NAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDAL 1312
Query: 278 FNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337
I +++ V+ L +++ + DE+H LKN K L + + ++ +LL+GTP
Sbjct: 1313 --ITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGL-LAFRMEHRVLLTGTP 1369
Query: 338 ALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397
+ ELF L L+P + N + + FG Q ++L ++K +M+RR
Sbjct: 1370 LQNNIDELFSLLNFLHPQQFDNSATFLEQ------FGSCQTDDQVQKLQEILKP-MMLRR 1422
Query: 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQ 425
LK+DV L K ++ ++V DM++
Sbjct: 1423 LKEDVEKSLGPK--EETIIEVQLSDMQK 1448
Score = 43 (20.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 526 QALVTEFQEKDDVKAAVLSMKAGGVGL--TLTAAST 559
Q ++ ++Q+ AA+ SM GG G+ T TAAS+
Sbjct: 2816 QMMLQQYQQA----AALQSMLYGGYGMPTTSTAASS 2847
Score = 40 (19.1 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 1 MEVDDEWEFSAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK 60
++ DD F+ E F E E +Q + S E + T+ ++ AP
Sbjct: 821 VKADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSKDDIKEEEDDDTSTITKDMSEAPS 880
Query: 61 GSLGDFSKEQVP 72
+ F++ P
Sbjct: 881 ETNDGFTEPSTP 892
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 208 (78.3 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK-KKVHCIRIDGGTPPASRQALV 529
K+ V L+ + G + L+F+ + MLD + ++FL+ +K +++DG T ASRQ L+
Sbjct: 835 KMIVVESLLKIWHKQGQRVLLFSQSRQMLDIL-EVFLRAQKYSYLKMDGTTAIASRQPLI 893
Query: 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
T + E + +L+ + GG+G+ LT A+ VI + W P QA +RA RIGQ V
Sbjct: 894 TRYNEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 953
Query: 590 VYYLLANDTVDDIVW 604
VY LL T+++ ++
Sbjct: 954 VYRLLTAGTIEEKIY 968
Score = 184 (69.8 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 77/295 (26%), Positives = 132/295 (44%)
Query: 165 QIPAHIESKLLPFQRDGVRFA----LQHGGRILLADEMGLGKTIQAIA---------VAT 211
++P + KL +Q+ GVR+ Q G IL DEMGLGKTIQ IA + T
Sbjct: 494 KMPGFLFRKLFKYQQTGVRWLWELHCQQAGGIL-GDEMGLGKTIQIIAFLAGLSYSKIRT 552
Query: 212 C-----FRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
F+ + P +I+ P+++ W W PP V +L + G +T
Sbjct: 553 RGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWW--PPFR-VAILHETGS-----YTQKKE 604
Query: 267 NTKRNIP-LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325
R+I G+ I SY + +Q+ + ++ VI DE H ++N A T A
Sbjct: 605 KLIRDIAHCHGIL-ITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQF-- 661
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE-- 383
+ + ++LSG+P + EL+ + ++P + + ++ G Y AS +
Sbjct: 662 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 721
Query: 384 ---ELHNLMKATV---MIRRLKKDVLAQL--PVKRRQQVFLDVAEKDMRQIYALF 430
+ +++ T+ ++RR+K DV L P K Q +F + E + ++Y F
Sbjct: 722 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTE-EQHKVYQNF 775
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 199 (75.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 82/275 (29%), Positives = 133/275 (48%)
Query: 166 IPAHIESKLLPFQRDGVRF------ALQHGGRI--LLADEMGLGKTIQAIAVA-TCFRD- 215
+ +I + L P QR+G+ F ++ GR +LADEMGLGKT+Q I++ T R
Sbjct: 295 VDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQG 354
Query: 216 VW---PVL----ILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
V+ PVL I+TP SL +W Q+WL SE + V + F +SS
Sbjct: 355 VYGCKPVLKRALIVTPGSLVKNWKKEFQKWLG---SERIKVFTVDQDHKVEEF--ISS-- 407
Query: 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
PL + IISY+++L+ + + + F ++I DE H LKN+ K T A + +
Sbjct: 408 ----PLYSVM-IISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNL--SCE 460
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE---- 384
++L+GTP + E + +E + P V ++ Y Y + V A+ E+
Sbjct: 461 RRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGE 520
Query: 385 --LHNLMKAT-VMIRRLKKDVLAQ-LPVKRRQQVF 415
L + T + I R ++V+ + LP K+ +F
Sbjct: 521 KRAAELTRLTGLFILRRTQEVINKFLPPKKENIIF 555
Score = 188 (71.2 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 62/238 (26%), Positives = 111/238 (46%)
Query: 439 KIKAC--KSEEEVQSLKF---TE---KNLINKIYTDSAEAKIPAVLDYLETVIEAGCK-- 488
K K C KS+E V+S + T+ ++ + +++ K+ ++ L + E
Sbjct: 610 KEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSER 669
Query: 489 --FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSM 545
++ +++ L+ + + R+DG TP + RQ +V F K +LS
Sbjct: 670 QVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSS 729
Query: 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 605
KAGGVGL L AS +I ++ W P IQA R R GQ +V++Y LL T+++ ++
Sbjct: 730 KAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQ 789
Query: 606 VVRSKLENLGQVLDGHENS--LEVSSSQIRSS---PAKQKTLDSFLKRCNNVDDSEHQ 658
SK + G V+D + S + S ++R+ + L C+ + + +HQ
Sbjct: 790 RQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSSCVTHDLLECDCMGNKDHQ 847
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 216 (81.1 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 55/161 (34%), Positives = 85/161 (52%)
Query: 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKV 511
K T +N++ + S + +LD L T ++ G + LIF+ MLD + K +
Sbjct: 680 KMTRENVLRGLIMSSGKM---VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI 736
Query: 512 HCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPG 570
+ R+DG P A R+ + F D +LS +AGG+G+ L A TV+ + W P
Sbjct: 737 NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 796
Query: 571 DLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
+QA RAHRIGQ + V VY L++ DTV++ V + R K+
Sbjct: 797 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 837
Score = 175 (66.7 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 82/297 (27%), Positives = 129/297 (43%)
Query: 140 ENLHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLPFQRDGVR---FALQHGGRILLA 195
EN L Q + S P EK P I+ +L FQ G+ F G +LA
Sbjct: 342 ENSKILPQYSSNYTSQRPRF-EKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILA 400
Query: 196 DEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS 251
DEMGLGKT+Q +A + R P +I+ P S W ++W P + +
Sbjct: 401 DEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWA--PDLNCICYM- 457
Query: 252 QLGGSNRSGFTIVSSNTKRNIPLDGL----FNII--SYDVVLKLQNILMSSNFKIVIADE 305
G+ +S TI N G FN++ +Y+ +LK + L S ++ + DE
Sbjct: 458 ---GNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDE 514
Query: 306 SHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGN 365
+H LKNA++ +L K A +L++GTP + EL + L P + E
Sbjct: 515 AHRLKNAESS-LYESLNSFKVAN-RMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDF 572
Query: 366 RYCKGGVFGIYQGASNHEELHNLMKAT--VMIRRLKKDVLAQLPVKRRQQVFLDVAE 420
Q E +H+L + ++RRLKKDV LP K + + +++++
Sbjct: 573 EN---------QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSD 620
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 348 (127.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 121/446 (27%), Positives = 210/446 (47%)
Query: 192 ILLADEMGLGKTIQAIAVATCFRDVW----PVLILTPSSLRLHWAAMIQQWLNIPPSEIV 247
++LADEMGLGKT+Q++++ ++ P L++ P S +WA ++WL P I+
Sbjct: 646 VILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWL--PGMNII 703
Query: 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADE 305
V + + K P+ FN + +Y+VVLK + +L + ++ DE
Sbjct: 704 VYVGTRASREVCQQYEFYNEKKVGRPIK--FNALLTTYEVVLKDKAVLSKIKWIYLMVDE 761
Query: 306 SHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGN 365
+H LKN++A+ A L K + LL++GTP + EL+ L L P +KN E+
Sbjct: 762 AHRLKNSEAQLYTALLEFSTKNK--LLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVE 819
Query: 366 RYCKGGVFGIYQGASNHEEL--HNLMKATVMIRR-LKKDVLAQLPVKR---RQQVFLDVA 419
Y F + A+ H EL H L + + + L + L V+ ++Q + +
Sbjct: 820 NYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWIL 879
Query: 420 EKDMRQIYALFRELEV----VKGKIKAC-------KSEEEVQSLKFTEKNLINKIYTDSA 468
E++ + R +V + ++K C +S + + + ++KI S
Sbjct: 880 ERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSG 939
Query: 469 EAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ +LD L + E + LIF+ MLD + + + R+DG T RQ
Sbjct: 940 KL---VILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQ 996
Query: 528 LVTEFQE--KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQV 585
+ F DD +LS +AGG+G+ L A TV+ + W P + +QA RAHRIGQ
Sbjct: 997 AMDHFNAPASDDF-CFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQ 1055
Query: 586 SSVNVYYLLANDTVDDIVWDVVRSKL 611
VN+Y + + +V++ + + + K+
Sbjct: 1056 EVVNIYRFVTSKSVEEEILERAKRKM 1081
Score = 38 (18.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 34 SDSPSYKVEALPQGSRTLP 52
SD YK + P SR+LP
Sbjct: 188 SDHVHYKGYSNPTNSRSLP 206
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 219 (82.2 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 90/330 (27%), Positives = 147/330 (44%)
Query: 133 SGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIES---KLLPFQRDGV---RFAL 186
S VE + P+ DL++KY+ PA +E +L P+Q +G+ R++
Sbjct: 686 SKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSW 745
Query: 187 QHGGRILLADEMGLGKTIQAIA-VATCFRDVW---PVLILTPSSLRLHWAAMIQQWLN-- 240
G +LADEMGLGKTIQ + + + +++ P L+ P S ++W + W
Sbjct: 746 GQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDF 805
Query: 241 -----IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII--SYDVVLKLQNIL 293
I + V+ + S G I S R FN++ SY+++ L
Sbjct: 806 YCITYIGDKDSRAVIRENELSFEEG-AIRGSKVSRLRTTQYKFNVLLTSYELISMDAACL 864
Query: 294 MSSNFKIVIADESHFLKNAQAK--RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEA 351
S ++ +++ DE+H LK+ Q+K R + I Y LLL+GTP + ELF L
Sbjct: 865 GSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIA----YKLLLTGTPLQNNLEELFHLLNF 920
Query: 352 LYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRR 411
L D + ++ + G F + LH ++ M+RRLK DVL +P K
Sbjct: 921 LSRDKFNDLQAFQ------GEFADVSKEEQVKRLHEML-GPHMLRRLKTDVLKNMPSKSE 973
Query: 412 --QQVFLDVAEKDMRQIYALFRELEVVKGK 439
+V L +K + + L + E + K
Sbjct: 974 FIVRVELSAMQKKFYK-FILTKNYEALNSK 1002
Score = 186 (70.5 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 46/145 (31%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L+ + + LIF+ MLD + ++ RIDGG RQ
Sbjct: 1050 AAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQE 1109
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1110 AIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQAN 1169
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + ++V++ V V + K+
Sbjct: 1170 KVMIYRFVTRNSVEERVTQVAKRKM 1194
Score = 45 (20.9 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 11/54 (20%), Positives = 29/54 (53%)
Query: 430 FRELEVVKGKIKACKSEEEVQSL-KFTEKNLINKIYTDSAEAKIPAVLDYLETV 482
F +L+ +G+ EE+V+ L + +++ ++ TD + +P+ +++ V
Sbjct: 926 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLK-NMPSKSEFIVRV 978
Score = 38 (18.4 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 122 LSSAEKVLSEISGYNVEIE 140
+ S E V S S NVEIE
Sbjct: 121 MPSVEDVCSAFSVCNVEIE 139
>GENEDB_PFALCIPARUM|PFF0225w [details] [associations]
symbol:PFF0225w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002711 Pfam:PF00176 Pfam:PF01844
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL844505 RefSeq:XP_966036.1
ProteinModelPortal:C6KSP4 EnsemblProtists:PFF0225w:mRNA
GeneID:3885708 KEGG:pfa:PFF0225w EuPathDB:PlasmoDB:PF3D7_0604600
HOGENOM:HOG000281431 ProtClustDB:CLSZ2445154 Uniprot:C6KSP4
Length = 1712
Score = 334 (122.6 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 97/310 (31%), Positives = 166/310 (53%)
Query: 121 FLSSAEKVLSEISG--YNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQ 178
++ S +K+ +I Y+ +I+ + + + I + L E ++P I+ +L +Q
Sbjct: 647 YIFSKQKIEKKIINHYYHKKIQKIKRQMNQEIKNIC----LNEIKKKLPIRIQKVILTYQ 702
Query: 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238
+ F + GRIL+ADEMGLGKT+QAI++ F ++PVLI+TP+SL+++W + I+++
Sbjct: 703 LQAIYFFFKKRGRILIADEMGLGKTLQAISIFY-FYHLYPVLIITPASLKINWFSEIEKY 761
Query: 239 LN-IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSN 297
L P ++++ S SN +S+ K I+S+++ KL N+L
Sbjct: 762 LPAFDPQNVLIINS----SN--DMPKCASSYK--------IIIVSFNIYKKLYNLLKEIQ 807
Query: 298 FKIVIADESHFLKNA----QAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALY 353
F ++I DESHF++ Q++ T I+K ++ L LSGTP+++RPI +F Q++ L
Sbjct: 808 FHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRKTKHVLFLSGTPSINRPINIFHQIKYLI 867
Query: 354 --PDVY-KNVHEYGNRYCKGGVF-G--IYQGASNHEELHNLMKATVMIRRLKKDVLAQ-L 406
+++ KN +G YCK + G IY+ E H + VMIRR V
Sbjct: 868 NNKNIFPKNKIIFGEDYCKKYFYRGEKIYEENLRSWEFHYFLNKIVMIRRTINQVFQNNF 927
Query: 407 PVKRRQQVFL 416
P +R V+L
Sbjct: 928 PSLKRFFVYL 937
Score = 53 (23.7 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 32/163 (19%), Positives = 62/163 (38%)
Query: 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPML----DAIHQLFLKKK------VHCIRIDGG 519
+KI L ++E K +IF +H + D + ++ +KK + + ++G
Sbjct: 1071 SKIVNALQFIEKNFP-NKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGC 1129
Query: 520 TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRA 579
P + + FQ + + ++ + GL + + F E L Q E R
Sbjct: 1130 IPEKEKIEKILYFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRL 1189
Query: 580 HRIGQVSSVNVYYLLANDTV--DDIVWDVVRSKLENLGQVLDG 620
R Q + V+Y L + D W+ + ++DG
Sbjct: 1190 FRKNQKHNTYVFYFLLQKGLGSDHKTWNRFILCSNSTRSIIDG 1232
Score = 44 (20.5 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 440 IKACKSEEEVQ----SLKFTEKNLINK 462
IK+ K EE V +L+F EKN NK
Sbjct: 1061 IKSKKEEEGVSKIVNALQFIEKNFPNK 1087
>UNIPROTKB|C6KSP4 [details] [associations]
symbol:PFF0225w "DNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002711 Pfam:PF00176 Pfam:PF01844 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL844505 RefSeq:XP_966036.1
ProteinModelPortal:C6KSP4 EnsemblProtists:PFF0225w:mRNA
GeneID:3885708 KEGG:pfa:PFF0225w EuPathDB:PlasmoDB:PF3D7_0604600
HOGENOM:HOG000281431 ProtClustDB:CLSZ2445154 Uniprot:C6KSP4
Length = 1712
Score = 334 (122.6 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 97/310 (31%), Positives = 166/310 (53%)
Query: 121 FLSSAEKVLSEISG--YNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQ 178
++ S +K+ +I Y+ +I+ + + + I + L E ++P I+ +L +Q
Sbjct: 647 YIFSKQKIEKKIINHYYHKKIQKIKRQMNQEIKNIC----LNEIKKKLPIRIQKVILTYQ 702
Query: 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238
+ F + GRIL+ADEMGLGKT+QAI++ F ++PVLI+TP+SL+++W + I+++
Sbjct: 703 LQAIYFFFKKRGRILIADEMGLGKTLQAISIFY-FYHLYPVLIITPASLKINWFSEIEKY 761
Query: 239 LN-IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSN 297
L P ++++ S SN +S+ K I+S+++ KL N+L
Sbjct: 762 LPAFDPQNVLIINS----SN--DMPKCASSYK--------IIIVSFNIYKKLYNLLKEIQ 807
Query: 298 FKIVIADESHFLKNA----QAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALY 353
F ++I DESHF++ Q++ T I+K ++ L LSGTP+++RPI +F Q++ L
Sbjct: 808 FHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRKTKHVLFLSGTPSINRPINIFHQIKYLI 867
Query: 354 --PDVY-KNVHEYGNRYCKGGVF-G--IYQGASNHEELHNLMKATVMIRRLKKDVLAQ-L 406
+++ KN +G YCK + G IY+ E H + VMIRR V
Sbjct: 868 NNKNIFPKNKIIFGEDYCKKYFYRGEKIYEENLRSWEFHYFLNKIVMIRRTINQVFQNNF 927
Query: 407 PVKRRQQVFL 416
P +R V+L
Sbjct: 928 PSLKRFFVYL 937
Score = 53 (23.7 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 32/163 (19%), Positives = 62/163 (38%)
Query: 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPML----DAIHQLFLKKK------VHCIRIDGG 519
+KI L ++E K +IF +H + D + ++ +KK + + ++G
Sbjct: 1071 SKIVNALQFIEKNFP-NKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGC 1129
Query: 520 TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRA 579
P + + FQ + + ++ + GL + + F E L Q E R
Sbjct: 1130 IPEKEKIEKILYFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRL 1189
Query: 580 HRIGQVSSVNVYYLLANDTV--DDIVWDVVRSKLENLGQVLDG 620
R Q + V+Y L + D W+ + ++DG
Sbjct: 1190 FRKNQKHNTYVFYFLLQKGLGSDHKTWNRFILCSNSTRSIIDG 1232
Score = 44 (20.5 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 440 IKACKSEEEVQ----SLKFTEKNLINK 462
IK+ K EE V +L+F EKN NK
Sbjct: 1061 IKSKKEEEGVSKIVNALQFIEKNFPNK 1087
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 209 (78.6 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 115/454 (25%), Positives = 199/454 (43%)
Query: 93 DPVLVSAFRKIPKATWNAKERL--WTFPVPFLSSAEKVLSEISGYNV-EIENLH--PLVQ 147
D +L A K P L W +P+ S ++ ++ + E E L P ++
Sbjct: 175 DRILEVAHTKDPDTGEEVTHYLVKWC-SLPYEESTWELEEDVDPVKIKEFEALQIPPEIK 233
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTI 204
AS + EK + ++L +Q +G+ + L + +LADEMGLGKTI
Sbjct: 234 HMERPASESWQKLEKSREYKN--SNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTI 291
Query: 205 QAIA-VATCF-RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGF 261
Q+I ++ F + P LI+ P S +W + W + + IV SQ+ +
Sbjct: 292 QSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEM--NAIVYHGSQISRQMIQQY 349
Query: 262 TIVSSNTKRNIPLDGLFN----IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317
+V +T+ N PL G+F I +++++L L ++ V+ DE+H LKN K
Sbjct: 350 EMVYRDTQGN-PLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLL 408
Query: 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQ 377
L ++ ++ +LL+GTP + ELF L L P + + + FG +
Sbjct: 409 EG-LKLMA-LEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEE------FGDLK 460
Query: 378 GASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY---ALFRELE 434
++L +++K +M+RRLK DV L K Q+ ++V ++++ Y L +
Sbjct: 461 TEEQVKKLQSILKP-MMLRRLKDDVEKNLAPK--QETIIEVELTNIQKKYYRAILEKNFS 517
Query: 435 VVKGKIKACKSEEEVQSLKFTEK--N---LIN----KIYTDSAEAKIPAVLDY-LETVIE 484
+ + ++ K N LIN KI D + P D+ L+ +I+
Sbjct: 518 FLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQ 577
Query: 485 AGCKFLIFAHHQPMLDAI-HQ-LFLKKKVHCIRI 516
A K ++ P L A H+ L + V C+ I
Sbjct: 578 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDI 611
Score = 196 (74.1 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 578 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 637
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 638 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 697
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 698 AVKVYRLITRNSYEREMFDKASLKL 722
Score = 45 (20.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +WD++ + Q L H +S+ R K+ L
Sbjct: 939 VKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSG---LSAPVPRGRKGKKTKNQMLLPEI 995
Query: 650 NNVD 653
N D
Sbjct: 996 KNAD 999
Score = 37 (18.1 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L ++ + S S+ AK + S + ++DD QK
Sbjct: 774 EDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 822
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 209 (78.6 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 115/454 (25%), Positives = 199/454 (43%)
Query: 93 DPVLVSAFRKIPKATWNAKERL--WTFPVPFLSSAEKVLSEISGYNV-EIENLH--PLVQ 147
D +L A K P L W +P+ S ++ ++ + E E L P ++
Sbjct: 175 DRILEVAHTKDPDTGEEVTHYLVKWC-SLPYEESTWELEEDVDPVKIKEFEALQIPPEIK 233
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTI 204
AS + EK + ++L +Q +G+ + L + +LADEMGLGKTI
Sbjct: 234 HMERPASESWQKLEKSREYKN--SNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTI 291
Query: 205 QAIA-VATCF-RDVW-PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGF 261
Q+I ++ F + P LI+ P S +W + W + + IV SQ+ +
Sbjct: 292 QSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEM--NAIVYHGSQISRQMIQQY 349
Query: 262 TIVSSNTKRNIPLDGLFN----IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317
+V +T+ N PL G+F I +++++L L ++ V+ DE+H LKN K
Sbjct: 350 EMVYRDTQGN-PLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLL 408
Query: 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQ 377
L ++ ++ +LL+GTP + ELF L L P + + + FG +
Sbjct: 409 EG-LKLMA-LEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEE------FGDLK 460
Query: 378 GASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY---ALFRELE 434
++L +++K +M+RRLK DV L K Q+ ++V ++++ Y L +
Sbjct: 461 TEEQVKKLQSILKP-MMLRRLKDDVEKNLAPK--QETIIEVELTNIQKKYYRAILEKNFS 517
Query: 435 VVKGKIKACKSEEEVQSLKFTEK--N---LIN----KIYTDSAEAKIPAVLDY-LETVIE 484
+ + ++ K N LIN KI D + P D+ L+ +I+
Sbjct: 518 FLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQ 577
Query: 485 AGCKFLIFAHHQPMLDAI-HQ-LFLKKKVHCIRI 516
A K ++ P L A H+ L + V C+ I
Sbjct: 578 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDI 611
Score = 196 (74.1 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 578 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 637
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 638 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 697
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 698 AVKVYRLITRNSYEREMFDKASLKL 722
Score = 45 (20.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +WD++ + Q L H +S+ R K+ L
Sbjct: 939 VKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSG---LSAPVPRGRKGKKTKNQMLLPEI 995
Query: 650 NNVD 653
N D
Sbjct: 996 KNAD 999
Score = 37 (18.1 bits), Expect = 2.9e-26, Sum P(3) = 2.9e-26
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L ++ + S S+ AK + S + ++DD QK
Sbjct: 774 EDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 822
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 212 (79.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 110/425 (25%), Positives = 193/425 (45%)
Query: 119 VPFLSSAEKVLSEISGYNV-EIENLHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLP 176
+P+ S ++ ++ V E E+L L + A+ D +K ++ + S +L
Sbjct: 405 LPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS-DSWQKLEKSREYKNSNQLRE 463
Query: 177 FQRDGVRFAL---QHGGRILLADEMGLGKTIQAIA-VATCF-RDVW-PVLILTPSSLRLH 230
+Q +G+ + L + +LADEMGLGKTIQ+I ++ F R + P LI+ P S +
Sbjct: 464 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITN 523
Query: 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISYDVV 286
W + W + + IV SQ+ + +V + + N PL G+F I +++++
Sbjct: 524 WEREFRTWTEM--NAIVYHGSQISRQMIQQYEMVYRDAQGN-PLSGVFKFHVVITTFEMI 580
Query: 287 LKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELF 346
L L ++ VI DE+H LKN K L ++ ++ +LL+GTP + ELF
Sbjct: 581 LADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG-LKLMA-LEHKVLLTGTPLQNSVEELF 638
Query: 347 KQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406
L L P + + + FG + ++L +++K +M+RRLK DV L
Sbjct: 639 SLLNFLEPSQFPSETAFLEE------FGDLKTEEQVKKLQSILKP-MMLRRLKDDVEKNL 691
Query: 407 PVKRRQQVFLDVAEKDMRQIY---ALFRELEVVKGKIKACKSEEEVQSLKFTEK--N--- 458
K Q+ ++V ++++ Y L + + + ++ K N
Sbjct: 692 APK--QETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPY 749
Query: 459 LIN----KIYTDSAEAKIPAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LFLKKKV 511
LIN KI D + P D+ L+ +I+A K ++ P L A H+ L + V
Sbjct: 750 LINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
Query: 512 HCIRI 516
C+ I
Sbjct: 810 RCLDI 814
Score = 196 (74.1 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 781 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 840
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 841 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 900
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 901 AVKVYRLITRNSYEREMFDKASLKL 925
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 18 EREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK 60
E + L+ + HS P D+P ++++A+ Q + L L PK
Sbjct: 755 EEKILEDFRKTHS-P--DAPDFQLQAMIQAAGKLVLIDKLLPK 794
Score = 40 (19.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +W+++ + Q L H +S+ R K+ L
Sbjct: 1142 VKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSG---LSAPVPRGRKGKKTKNQLLLPEL 1198
Query: 650 NNVD 653
N D
Sbjct: 1199 KNAD 1202
Score = 38 (18.4 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L +++ + S S+ AK + S + ++DD QK
Sbjct: 977 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 1025
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 212 (79.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 110/425 (25%), Positives = 193/425 (45%)
Query: 119 VPFLSSAEKVLSEISGYNV-EIENLHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLP 176
+P+ S ++ ++ V E E+L L + A+ D +K ++ + S +L
Sbjct: 405 LPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS-DSWQKLEKSREYKNSNQLRE 463
Query: 177 FQRDGVRFAL---QHGGRILLADEMGLGKTIQAIA-VATCF-RDVW-PVLILTPSSLRLH 230
+Q +G+ + L + +LADEMGLGKTIQ+I ++ F R + P LI+ P S +
Sbjct: 464 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITN 523
Query: 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISYDVV 286
W + W + + IV SQ+ + +V + + N PL G+F I +++++
Sbjct: 524 WEREFRTWTEM--NAIVYHGSQISRQMIQQYEMVYRDAQGN-PLSGVFKFHVVITTFEMI 580
Query: 287 LKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELF 346
L L ++ VI DE+H LKN K L ++ ++ +LL+GTP + ELF
Sbjct: 581 LADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG-LKLMA-LEHKVLLTGTPLQNSVEELF 638
Query: 347 KQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406
L L P + + + FG + ++L +++K +M+RRLK DV L
Sbjct: 639 SLLNFLEPSQFPSETAFLEE------FGDLKTEEQVKKLQSILKP-MMLRRLKDDVEKNL 691
Query: 407 PVKRRQQVFLDVAEKDMRQIY---ALFRELEVVKGKIKACKSEEEVQSLKFTEK--N--- 458
K Q+ ++V ++++ Y L + + + ++ K N
Sbjct: 692 APK--QETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPY 749
Query: 459 LIN----KIYTDSAEAKIPAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LFLKKKV 511
LIN KI D + P D+ L+ +I+A K ++ P L A H+ L + V
Sbjct: 750 LINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
Query: 512 HCIRI 516
C+ I
Sbjct: 810 RCLDI 814
Score = 196 (74.1 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 781 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 840
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 841 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 900
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 901 AVKVYRLITRNSYEREMFDKASLKL 925
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 18 EREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK 60
E + L+ + HS P D+P ++++A+ Q + L L PK
Sbjct: 755 EEKILEDFRKTHS-P--DAPDFQLQAMIQAAGKLVLIDKLLPK 794
Score = 40 (19.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +W+++ + Q L H +S+ R K+ L
Sbjct: 1142 VKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSG---LSAPVPRGRKGKKTKNQLLLPEL 1198
Query: 650 NNVD 653
N D
Sbjct: 1199 KNAD 1202
Score = 38 (18.4 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L +++ + S S+ AK + S + ++DD QK
Sbjct: 977 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 1025
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 212 (79.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 110/425 (25%), Positives = 193/425 (45%)
Query: 119 VPFLSSAEKVLSEISGYNV-EIENLHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLP 176
+P+ S ++ ++ V E E+L L + A+ D +K ++ + S +L
Sbjct: 405 LPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS-DSWQKLEKSREYKNSNQLRE 463
Query: 177 FQRDGVRFAL---QHGGRILLADEMGLGKTIQAIA-VATCF-RDVW-PVLILTPSSLRLH 230
+Q +G+ + L + +LADEMGLGKTIQ+I ++ F R + P LI+ P S +
Sbjct: 464 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITN 523
Query: 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISYDVV 286
W + W + + IV SQ+ + +V + + N PL G+F I +++++
Sbjct: 524 WEREFRTWTEM--NAIVYHGSQISRQMIQQYEMVYRDAQGN-PLSGVFKFHVVITTFEMI 580
Query: 287 LKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELF 346
L L ++ VI DE+H LKN K L ++ ++ +LL+GTP + ELF
Sbjct: 581 LADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG-LKLMA-LEHKVLLTGTPLQNSVEELF 638
Query: 347 KQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406
L L P + + + FG + ++L +++K +M+RRLK DV L
Sbjct: 639 SLLNFLEPSQFPSETAFLEE------FGDLKTEEQVKKLQSILKP-MMLRRLKDDVEKNL 691
Query: 407 PVKRRQQVFLDVAEKDMRQIY---ALFRELEVVKGKIKACKSEEEVQSLKFTEK--N--- 458
K Q+ ++V ++++ Y L + + + ++ K N
Sbjct: 692 APK--QETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPY 749
Query: 459 LIN----KIYTDSAEAKIPAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LFLKKKV 511
LIN KI D + P D+ L+ +I+A K ++ P L A H+ L + V
Sbjct: 750 LINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
Query: 512 HCIRI 516
C+ I
Sbjct: 810 RCLDI 814
Score = 196 (74.1 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 781 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 840
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 841 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 900
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 901 AVKVYRLITRNSYEREMFDKASLKL 925
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 18 EREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK 60
E + L+ + HS P D+P ++++A+ Q + L L PK
Sbjct: 755 EEKILEDFRKTHS-P--DAPDFQLQAMIQAAGKLVLIDKLLPK 794
Score = 38 (18.4 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L +++ + S S+ AK + S + ++DD QK
Sbjct: 977 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 1025
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621
V + ++ + +W+++ + Q L H
Sbjct: 1142 VKHYKGDEKIKSFIWELITPTKDGQAQTLQNH 1173
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 345 (126.5 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 139/512 (27%), Positives = 250/512 (48%)
Query: 167 PAHIESK---LLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIA-VATCFRD--- 215
P++I S+ L +Q +G+ + L H ++LADEMGLGKTIQ I+ ++ F
Sbjct: 476 PSYIGSENLELRDYQLEGLNW-LAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQL 534
Query: 216 VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPL 274
P L++ P S W + W P +VV + L N + + S +KR +
Sbjct: 535 YGPFLVVVPLSTLTSWQREFEVWA--PEINVVVYIGDLMSRNMIREYEWIHSQSKR-LKF 591
Query: 275 DGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334
+ L I +Y+++LK + +L S ++ + DE+H LKN + TL I K+ + LL++
Sbjct: 592 NAL--ITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSL-LYKTL-IDFKSNHRLLIT 647
Query: 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394
GTP + EL+ L + P+ ++ ++ + KG G YQ S H+ L + V
Sbjct: 648 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENG-YQ--SLHKVLEPFLLRRVK 704
Query: 395 IRRLKKDVLAQLP-VKR------RQQVFLDVAEKDMRQIYALFRE-----LEVVKGKIKA 442
+ ++K + A++ + R ++Q + + ++ + + R L +V K
Sbjct: 705 -KDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKC 763
Query: 443 CKSEEEVQSLKFTEK-NLINKIYTDSAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLD 500
C ++ + E+ N I + + + +LD L T + + G + LIF+ MLD
Sbjct: 764 CNHCYLIKPPEENERENGIETLQSLIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLD 823
Query: 501 AIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAAST 559
+ + K R+DG R+ + F + + +LS +AGG+G+ L +A T
Sbjct: 824 ILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADT 883
Query: 560 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENLG-Q 616
V+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K L++L Q
Sbjct: 884 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 943
Query: 617 VLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
+D + L+ +S + S+P ++ L + LK
Sbjct: 944 RMDTTGRTVLDNNSGRSNSNPFNKEELTAILK 975
Score = 39 (18.8 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 601 DIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
D + +++ LE + DG E L+ +++ K D + S++Q +
Sbjct: 1319 DYLLKLLKKDLEKKENMKDGEEGKLKKRKPRVKKENKAPKVKDEHGNELSPPRHSDNQSE 1378
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 201 (75.8 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 63/180 (35%), Positives = 93/180 (51%)
Query: 486 GCKFLIFAHHQPMLDAIHQ-LFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VL 543
G + LIF+ MLD + L L+ H R+DG P A R+ + F + +L
Sbjct: 706 GHRVLIFSQMVRMLDILGDYLSLRGYPHQ-RLDGTVPAAVRRTSIDHFNAPNSPDFVFLL 764
Query: 544 SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIV 603
S +AGG+G+ L A TVI + W P +QA RAHRIGQ + V VY LL+ DT+++ V
Sbjct: 765 STRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDV 824
Query: 604 WDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLK-RCNNVDDSEHQQK 660
+ R K+ +L+ SL V+ Q S K + L + LK +N+ +E+ QK
Sbjct: 825 LERARRKM-----ILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQK 879
Score = 187 (70.9 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 88/309 (28%), Positives = 145/309 (46%)
Query: 130 SEISGYNVEIEN-LHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLPFQRDGVRFA-- 185
+EI + E+ L P R ++ P R K +Q P++I +L FQ GV +
Sbjct: 332 TEIQAFQEREESALSP--SRGTNYGNSRPKYR-KLEQQPSYITGGELRDFQLTGVNWMAY 388
Query: 186 LQHGGRI-LLADEMGLGKTIQAIA----VATCFRDVWPVLILTPSSLRLHWAAMIQQWLN 240
L H +LADEMGLGKT+Q +A +A R P L++ P S W + W
Sbjct: 389 LWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWA- 447
Query: 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGL----FNII--SYDVVLKLQNILM 294
S++ + S LG N + ++ +DG FN++ +Y+ VLK +++L
Sbjct: 448 ---SDMNCI-SYLG--NTTSRQVIRDY---EFYVDGTQKIKFNLLLTTYEYVLKDRSVLS 498
Query: 295 SSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYP 354
+ ++ + DE+H LKN+++ A L K + LL++GTP + EL ++ L P
Sbjct: 499 NIKWQYMAIDEAHRLKNSESSLYEA-LSQFKNSN-RLLITGTPLQNNIRELAALVDFLMP 556
Query: 355 DVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQV 414
++ + E N Y S E L ++RRLKKDV LP K + +
Sbjct: 557 GKFE-IREEINLEAPDEEQEAYI-RSLQEHLQ-----PYILRRLKKDVEKSLPSKSERIL 609
Query: 415 FLDVAEKDM 423
+++++ M
Sbjct: 610 RVELSDLQM 618
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 211 (79.3 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 114/427 (26%), Positives = 197/427 (46%)
Query: 119 VPFLSSAEKVLSEISGYNV-EIENLHPLVQRAIASASAAPDLREKYDQIPAHIES-KLLP 176
+P+ S ++ ++ V E E+L L + A+ D +K ++ + S +L
Sbjct: 404 LPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPAS-DSWQKLEKSREYKNSNQLRE 462
Query: 177 FQRDGVRFAL---QHGGRILLADEMGLGKTIQAIA-VATCF-RDVW-PVLILTPSSLRLH 230
+Q +G+ + L + +LADEMGLGKTIQ+I ++ F R + P LI+ P S +
Sbjct: 463 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITN 522
Query: 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISYDVV 286
W + W + + IV SQ+ + +V + + N PL G+F I +++++
Sbjct: 523 WEREFRTWTEM--NAIVYHGSQISRQMIQQYEMVYRDAQGN-PLSGVFKFHVVITTFEMI 579
Query: 287 LKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELF 346
L L ++ VI DE+H LKN K L ++ ++ +LL+GTP + ELF
Sbjct: 580 LADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG-LKLMA-LEHKVLLTGTPLQNSVEELF 637
Query: 347 KQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406
L L P + + + FG + ++L +++K +M+RRLK DV L
Sbjct: 638 SLLNFLEPSQFPSETAFLEE------FGDLKTEEQVKKLQSILKP-MMLRRLKDDVEKNL 690
Query: 407 PVKRRQQVFLDVAEKDMRQIYALFRE-LEVVKGKIKACKSEEEVQSLKFTEKNL---INK 462
K Q+ ++V ++++ Y +R LE + ++ + +L T L N
Sbjct: 691 APK--QETIIEVELTNIQKKY--YRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNH 746
Query: 463 IYTDS-AEAKI---------PAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LFLKK 509
Y S AE KI P D+ L+ +I+A K ++ P L A H+ L +
Sbjct: 747 PYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQ 806
Query: 510 KVHCIRI 516
V C+ I
Sbjct: 807 MVRCLDI 813
Score = 196 (74.1 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 49/145 (33%), Positives = 75/145 (51%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L +I G K LIF+ LD + ++++ RIDG RQA
Sbjct: 780 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 839
Query: 528 LVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 840 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 899
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
+V VY L+ ++ + ++D KL
Sbjct: 900 AVKVYRLITRNSYEREMFDKASLKL 924
Score = 44 (20.5 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 18 EREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPK 60
E + L+ + HS P D+P ++++A+ Q + L L PK
Sbjct: 754 EEKILEDFRKTHS-P--DAPDFQLQAMIQAAGKLVLIDKLLPK 793
Score = 40 (19.1 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRC 649
V + ++ + +W+++ + Q L H +S+ R K+ L
Sbjct: 1141 VKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSG---LSAPVPRGRKGKKTKNQLLLPEL 1197
Query: 650 NNVD 653
N D
Sbjct: 1198 KNAD 1201
Score = 38 (18.4 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 612 ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
E++ Q+L +++ + S S+ AK + S + ++DD QK
Sbjct: 976 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK 1024
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 192 (72.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 84/301 (27%), Positives = 141/301 (46%)
Query: 139 IENLHP---LVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRI 192
I++ HP V R ASA +L +Y ++L +Q +GV + L +
Sbjct: 4 IQSRHPELKRVNRPQASAWKKLELSHEYKN-----RNQLREYQLEGVNWLLFNWYNRQNC 58
Query: 193 LLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVV 249
+LADEMGLGKTIQ+IA +V P L++ P S +W W + + IV
Sbjct: 59 ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEM--NTIVYH 116
Query: 250 LSQLGGSNRSGFTIVSSNTK-RNIPLDGLFN--IISYDVVLKLQNILMSSNFKIVIADES 306
S + + +++ R IP F+ I +++++L L ++ VI DE+
Sbjct: 117 GSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEA 176
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H LKN K + + ++ +LL+GTP + ELF L L P + + E+
Sbjct: 177 HRLKNRNCKLLDSLKHM--DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEF--- 231
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI 426
K FG + ++L ++K +M+RRLK+DV L K Q+ ++V ++++
Sbjct: 232 -LKD--FGDLKTEEQVQKLQAILKP-MMLRRLKEDVEKNLAPK--QETIIEVELTNIQKK 285
Query: 427 Y 427
Y
Sbjct: 286 Y 286
Score = 191 (72.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 48/139 (34%), Positives = 75/139 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + ++++ RIDG RQA + F
Sbjct: 363 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 422
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 423 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 482
Query: 593 LLANDTVDDIVWDVVRSKL 611
L+ ++ + ++D KL
Sbjct: 483 LITRNSYEREMFDKASLKL 501
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 200 (75.5 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 59/186 (31%), Positives = 94/186 (50%)
Query: 448 EVQSLKFTE-KNLINK--IY-----TDSAE-----AKIPAVLDYLETVIEAGCKFLIFAH 494
++Q+LK + +N+ N IY D AE AK + L ++ +G K LIFA
Sbjct: 576 KLQNLKMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQ 635
Query: 495 HQPMLDAIHQLFLKKKV-H---CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550
+LD + + + H C R+DG T R +++F K + S +AGG+
Sbjct: 636 FTKVLDLLEDWLEESPLSHGKIC-RLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGL 694
Query: 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610
G+ L AA TVI + W P +QA DR HRIGQ++ V ++ + D++++++ SK
Sbjct: 695 GINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754
Query: 611 --LENL 614
LE L
Sbjct: 755 RFLERL 760
Score = 189 (71.6 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 82/318 (25%), Positives = 148/318 (46%)
Query: 173 KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSS 226
+L +Q DG+ + + Q+G +LADEMGLGKT+Q I+ + + P L++ P S
Sbjct: 174 QLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVS 233
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN-RSGFTIVSSNTKRNIPLDGLFNIISYDV 285
+W I+++ P + V +G R+ ++ NI L SY++
Sbjct: 234 TLSNWYNEIRKFA---PK--IKVTKYIGTKQERNDIDLLQQQETTNIILT------SYEI 282
Query: 286 VLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYA--LLLSGTPALSRPI 343
++ N L+ N+K +I DE H LKN+Q + I+KK + LLL+GTP +
Sbjct: 283 SIRDFNKLVKINWKYLIVDEGHRLKNSQC----LLIKILKKLNVSNRLLLTGTPLQNNLN 338
Query: 344 ELFKQLEALYPDVYKNVH---EYGNRYCKGGVFGIYQGASNHE--ELHNLMKATVMIRRL 398
EL+ L + PD++ ++ ++ N + G +G +N E E NL+K + +
Sbjct: 339 ELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLI 398
Query: 399 KK--DVLAQLPVKR-RQQVFLDVAEKDMRQIYALFRELE------VVKGKIKACKSEEEV 449
K +L ++R ++ V ++ K ++ +L+ V K+ E +
Sbjct: 399 KNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLVETNL 458
Query: 450 QS-LKFTEKNLINKIYTD 466
++ +KF + L N D
Sbjct: 459 KAFIKFNHEELFNGFDVD 476
Score = 38 (18.4 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 594 LAND-TVDDIV-WDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNN 651
+ ND +++D++ + K GQ ++S E + S + LD ++ N+
Sbjct: 788 IKNDWSINDMMELSKIHFKSTQNGQT---SQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
Query: 652 VDDSEHQQKLK 662
+DDS+ K+K
Sbjct: 845 IDDSKFD-KVK 854
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 200 (75.5 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 59/186 (31%), Positives = 94/186 (50%)
Query: 448 EVQSLKFTE-KNLINK--IY-----TDSAE-----AKIPAVLDYLETVIEAGCKFLIFAH 494
++Q+LK + +N+ N IY D AE AK + L ++ +G K LIFA
Sbjct: 576 KLQNLKMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQ 635
Query: 495 HQPMLDAIHQLFLKKKV-H---CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550
+LD + + + H C R+DG T R +++F K + S +AGG+
Sbjct: 636 FTKVLDLLEDWLEESPLSHGKIC-RLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGL 694
Query: 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610
G+ L AA TVI + W P +QA DR HRIGQ++ V ++ + D++++++ SK
Sbjct: 695 GINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754
Query: 611 --LENL 614
LE L
Sbjct: 755 RFLERL 760
Score = 189 (71.6 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 82/318 (25%), Positives = 148/318 (46%)
Query: 173 KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSS 226
+L +Q DG+ + + Q+G +LADEMGLGKT+Q I+ + + P L++ P S
Sbjct: 174 QLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVS 233
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN-RSGFTIVSSNTKRNIPLDGLFNIISYDV 285
+W I+++ P + V +G R+ ++ NI L SY++
Sbjct: 234 TLSNWYNEIRKFA---PK--IKVTKYIGTKQERNDIDLLQQQETTNIILT------SYEI 282
Query: 286 VLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYA--LLLSGTPALSRPI 343
++ N L+ N+K +I DE H LKN+Q + I+KK + LLL+GTP +
Sbjct: 283 SIRDFNKLVKINWKYLIVDEGHRLKNSQC----LLIKILKKLNVSNRLLLTGTPLQNNLN 338
Query: 344 ELFKQLEALYPDVYKNVH---EYGNRYCKGGVFGIYQGASNHE--ELHNLMKATVMIRRL 398
EL+ L + PD++ ++ ++ N + G +G +N E E NL+K + +
Sbjct: 339 ELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLI 398
Query: 399 KK--DVLAQLPVKR-RQQVFLDVAEKDMRQIYALFRELE------VVKGKIKACKSEEEV 449
K +L ++R ++ V ++ K ++ +L+ V K+ E +
Sbjct: 399 KNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLVETNL 458
Query: 450 QS-LKFTEKNLINKIYTD 466
++ +KF + L N D
Sbjct: 459 KAFIKFNHEELFNGFDVD 476
Score = 38 (18.4 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 594 LAND-TVDDIV-WDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNN 651
+ ND +++D++ + K GQ ++S E + S + LD ++ N+
Sbjct: 788 IKNDWSINDMMELSKIHFKSTQNGQT---SQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
Query: 652 VDDSEHQQKLK 662
+DDS+ K+K
Sbjct: 845 IDDSKFD-KVK 854
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 196 (74.1 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 708 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 767
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 768 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 825
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 826 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 885
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 886 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 939
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 940 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 996
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 997 TRNFEALNSR 1006
Score = 194 (73.4 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1054 ASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1113
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1114 AIDRFNAHGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1173
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1174 KVMIYRFVTRASVEERITQVAKRKM 1198
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 196 (74.1 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 710 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 769
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 770 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 827
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 828 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 887
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 888 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 941
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 942 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 998
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 999 TRNFEALNSR 1008
Score = 194 (73.4 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1056 ASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1115
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1116 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1175
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1176 KVMIYRFVTRASVEERITQVAKRKM 1200
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 196 (74.1 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 712 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 771
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 772 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 829
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 830 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 890 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 943
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 944 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 1000
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 1001 TRNFEALNSR 1010
Score = 194 (73.4 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
A K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1058 ASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1117
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1178 KVMIYRFVTRASVEERITQVAKRKM 1202
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 341 (125.1 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 144/524 (27%), Positives = 238/524 (45%)
Query: 157 PDLREKYDQI---PAHIES-KLLPFQRDGVRFALQH---GGRILLADEMGLGKTIQAIAV 209
P R+ ++ I P+ + + +L FQ GV F + ++LADEMGLGKT+Q +A
Sbjct: 425 PSSRKPFEPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAF 484
Query: 210 ATCFRDV----WPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN--RSGFTI 263
+ R V P +++ P S WA W P VV N + +
Sbjct: 485 ISWLRHVRRQQGPFVVVVPLSTMPSWAETFDNWS--PDLNYVVYNGNEASRNVLKEYELM 542
Query: 264 VSSNTKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATL 321
V N +R P FN++ +Y+ VL + L N++ + DE+H LKN ++
Sbjct: 543 VDGNPRR--PK---FNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQ 597
Query: 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASN 381
A+ LL++GTP + EL L+ L P + NV + A++
Sbjct: 598 EFNSPAR--LLITGTPIQNNLAELSALLDFLNPGLV-NVD---------ADMDLNSEAAS 645
Query: 382 HEELHNLMKAT--VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDM---RQI----YALFRE 432
E+L L KA M+RR K V + LP K + + +++++ + + I YA E
Sbjct: 646 -EKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALNE 704
Query: 433 ---------LEVVKGKIKACK-------SEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476
L ++ KA +E ++ ++++ + T S + + L
Sbjct: 705 GTKGQKQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDVLRALITSSGKMML---L 761
Query: 477 DYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK 535
D L ++ G + LIF+ MLD + + R+DG P ASR+ + +
Sbjct: 762 DQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNAP 821
Query: 536 DDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594
D A +LS +AGG+G+ L A TVI + W P +QA RAHRIGQ V+VY L+
Sbjct: 822 DSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLV 881
Query: 595 ANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK 638
+ DTV++ V + R+KL L + + + +S+I++ A+
Sbjct: 882 SKDTVEEEVIERARNKL--LLEFITIQRGVTDKEASEIQNKMAR 923
Score = 39 (18.8 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 599 VDDIVWD--VVRSKLENL 614
VDD+ WD + + +LE +
Sbjct: 1000 VDDLTWDDIIPKEQLEEI 1017
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 211 (79.3 bits), Expect = 6.8e-26, Sum P(3) = 6.8e-26
Identities = 89/327 (27%), Positives = 149/327 (45%)
Query: 170 IESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATCFRDV----WPVLIL 222
I L +Q G+ + + + + +LADEMG GKTIQ IA+ T + P LI+
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLNGPYLII 786
Query: 223 TPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNII- 281
P S +W +W PS + + RS + S G FN +
Sbjct: 787 VPLSTLSNWTYEFDKWA---PSAVKISYKGTPAMRRSLVPQLRS---------GKFNALL 834
Query: 282 -SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+Y+ ++K ++IL +K +I DE H +KN K T L A +LL+GTP +
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV-LNTHYVAPRRILLTGTPLQN 893
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE-------LHNLMKATV 393
+ EL+ L L P ++K+ + + + N EE LH +++
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP-F 952
Query: 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLK 453
++RRLKK+V +QLP K + D++ +++I L+R ++ KG + SE++ + K
Sbjct: 953 LLRRLKKEVESQLPEKVEYVIKCDMSA--LQKI--LYRHMQA-KGILLTDGSEKDKKG-K 1006
Query: 454 FTEKNLINKIYTDSAEAKIPAVLDYLE 480
K L+N I P + ++E
Sbjct: 1007 GGAKTLMNTIMQLRKICNHPYMFQHIE 1033
Score = 184 (69.8 bits), Expect = 6.8e-26, Sum P(3) = 6.8e-26
Identities = 44/130 (33%), Positives = 69/130 (53%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMK 546
+ L+F ++ + F + +R+DG T R AL+ +F E +LS +
Sbjct: 1075 RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR 1134
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ +
Sbjct: 1135 AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1194
Query: 607 VRSKLENLGQ 616
+ KL N+ Q
Sbjct: 1195 AKYKL-NVDQ 1203
Score = 40 (19.1 bits), Expect = 6.8e-26, Sum P(3) = 6.8e-26
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 127 KVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESK---LLPFQR 179
++L E Y ++ H + + S PDLR K A +E K LL FQR
Sbjct: 348 EILQERE-YRLQARIAHRIQELESLPGSLPPDLRTK-----ATVELKALRLLNFQR 397
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 209 (78.6 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 58/179 (32%), Positives = 95/179 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + ++++ RIDG RQA + F
Sbjct: 1239 LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1298
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 1299 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYR 1358
Query: 593 LLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKR 648
L+ ++ + ++D KL + + Q + G +NSL Q++ +K K ++ L+R
Sbjct: 1359 LITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSL-AGGGQMQQQLSK-KEIEDLLRR 1415
Score = 197 (74.4 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 95/369 (25%), Positives = 168/369 (45%)
Query: 171 ESKLLPFQRDGVRFAL--QHGGR-ILLADEMGLGKTIQAIA-VATCFRD--VWPVLILTP 224
E+ L +Q +GV + L + R +LADEMGLGKTIQ+I + +R P LI+ P
Sbjct: 910 ENSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRTGIKGPFLIIAP 969
Query: 225 SSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----I 280
S +W + W ++ + IV S + + + +++ + + G + I
Sbjct: 970 LSTIANWEREFRTWTHL--NVIVYHGSVVSRQMLQQYEMYCRDSQGRV-IRGAYRFQAVI 1026
Query: 281 ISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340
+++++L L + +++ VI DE+H LKN K + ++ +LL+GTP +
Sbjct: 1027 TTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFK--LMSLEHKVLLTGTPLQN 1084
Query: 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400
ELF L L P + + + + FG + ++L ++K +M+RRLK+
Sbjct: 1085 TVEELFSLLHFLEPTRFPSENTFMQE------FGDLKTEEQVQKLQAILKP-MMLRRLKE 1137
Query: 401 DVLAQLPVKRRQ--QVFL-DVAEKDMRQIYAL-FRELEVVKGKIKACKSEEEVQSLK--- 453
DV +L K +V L ++ +K R I F L G+ + L+
Sbjct: 1138 DVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANVPNLLNTMMELRKCC 1197
Query: 454 ---FTEKNLINKIYTDSAEAKIPAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LFL 507
+ K KI D E PA +D+ L+ +I++ K ++ P + A H+ L
Sbjct: 1198 NHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIF 1257
Query: 508 KKKVHCIRI 516
+ V C+ I
Sbjct: 1258 SQMVRCLDI 1266
Score = 37 (18.1 bits), Expect = 8.3e-26, Sum P(3) = 8.3e-26
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 10 SAEELDFLEREALQQIAQRHSKPFSDSPSYKVEALPQGSRTLPLSVAPAPKGSLGDFSKE 69
S + L +++ QQ Q+ P SD K + S + + K S +
Sbjct: 550 SEKRLQKQKQQQQQQQQQQMESPLSDDKQQKANRII--SEAIAKARERGEKNIPRVMSPD 607
Query: 70 QVPKLSVKFFLHTSGNIAAK 89
P S + H +G+ +K
Sbjct: 608 SFPSSSSQHRSHKAGSSKSK 627
Score = 37 (18.1 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 444 KSEEEVQSLKFTEKNLINKIYTDSAEAKI 472
+S ++ S + + + + K Y D EA+I
Sbjct: 680 RSSKDDDSKRRSNRKVKRKKYEDDGEARI 708
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 196 (74.1 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 712 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 771
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 772 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 829
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 830 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 890 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 943
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 944 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 1000
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 1001 TRNFEALNSR 1010
Score = 191 (72.3 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1117
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1178 KVMIYRFVTRASVEERITQVAKRKM 1202
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 196 (74.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 771 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 830
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 831 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 888
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 889 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 948
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 949 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 1002
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 1003 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 1059
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 1060 TRNFEALNSR 1069
Score = 191 (72.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1117 SSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1176
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1177 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1236
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1237 KVMIYRFVTRASVEERITQVAKRKM 1261
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 196 (74.1 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 668 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 727
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 728 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 785
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 786 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 845
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 846 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 899
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 900 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 956
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 957 TRNFEALNSR 966
Score = 190 (71.9 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1014 SSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1073
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1074 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1133
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1134 KVMIYRFVTRASVEERITQVAKRKM 1158
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 190 (71.9 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 48/160 (30%), Positives = 81/160 (50%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEAGC--KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGT 520
++++ K+ +L L + E K ++ +++ LD + ++ + R+DG T
Sbjct: 636 MFSEEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQT 695
Query: 521 PPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRA 579
P + RQ +V F K +LS KAGGVGL L S +I ++ W P IQA R
Sbjct: 696 PVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 755
Query: 580 HRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 619
R GQ + V++Y LL T+++ ++ SK + G V+D
Sbjct: 756 WRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVD 795
Score = 185 (70.2 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 75/275 (27%), Positives = 125/275 (45%)
Query: 166 IPAHIESKLLPFQRDGVRF------ALQHGGRI--LLADEMGLGKTIQAIAVATCFRDVW 217
I H+ L P Q++G+ F ++ GR +LADEMGLGKT+Q I++ +
Sbjct: 289 IDPHLVYHLRPHQKEGIMFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 348
Query: 218 P---------VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
P LI+TP SL +W Q+WL SE + + FT
Sbjct: 349 PYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLG---SERIKIFPVDQDHKVEEFT------ 399
Query: 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
R+ P + IISY+++L+ + + + F ++I DE H LKN+ K TAA + + +
Sbjct: 400 -RS-PFYSVL-IISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKTTAALISL--SCE 454
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL 388
++L+GTP + E F ++ + P + ++ Y Y + + AS E+
Sbjct: 455 KRVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEEEKKLGE 514
Query: 389 MKATVM--------IRRLKKDVLAQLPVKRRQQVF 415
+A + +RR ++ + LP K VF
Sbjct: 515 KRAVELTCLTGLFILRRTQEVINKYLPPKIENVVF 549
Score = 49 (22.3 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 42 EALPQGSRTLPLSVAPAPKG-SLGDFSKEQVPKLSVKFF 79
EA + LP +V PAPK ++ +E+ P VK+F
Sbjct: 89 EASVTATLDLPHTVHPAPKEITVSKGQEEEEPDSLVKYF 127
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 196 (74.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 763 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 822
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 823 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 880
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 881 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 940
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 941 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 994
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 995 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 1051
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 1052 TRNFEALNSR 1061
Score = 190 (71.9 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1109 SSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1168
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1169 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1228
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1229 KVMIYRFVTRASVEERITQVAKRKM 1253
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 196 (74.1 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 83/310 (26%), Positives = 134/310 (43%)
Query: 153 ASAAPDLREKYDQIPAHIESK---LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQA 206
+S D KY+ P I + L +Q +G+ RF+ G +LADEMGLGKTIQ
Sbjct: 763 SSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQT 822
Query: 207 IA-VATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGG-----SN 257
I + + +++ P L+ P S ++W Q W P +V N
Sbjct: 823 IVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWA--PKFYVVTYTGDKDSRAIIREN 880
Query: 258 RSGF--TIVSSNTKR-NIPLDGL--FNII--SYDVVLKLQNILMSSNFKIVIADESHFLK 310
F + K + + F+++ SY+++ Q L S + ++ DE+H LK
Sbjct: 881 EFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLK 940
Query: 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370
N Q+K K + LLL+GTP + ELF L L P+ + N+ +
Sbjct: 941 NNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE---- 994
Query: 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YAL 429
F ++LH+L+ M+RRLK DV +P K V ++++ + Y L
Sbjct: 995 --FADISKEDQIKKLHDLL-GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL 1051
Query: 430 FRELEVVKGK 439
R E + +
Sbjct: 1052 TRNFEALNSR 1061
Score = 190 (71.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQA 527
+ K+ + L + E G + LIF+ MLD + + RIDGG A RQ
Sbjct: 1109 SSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQE 1168
Query: 528 LVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVS 586
+ F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ +
Sbjct: 1169 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1228
Query: 587 SVNVYYLLANDTVDDIVWDVVRSKL 611
V +Y + +V++ + V + K+
Sbjct: 1229 KVMIYRFVTRASVEERITQVAKRKM 1253
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 321 (118.1 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 93/349 (26%), Positives = 168/349 (48%)
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
+ SY++++K +++ N++ ++ DE+H +KN ++K + K LLL+GTP
Sbjct: 5 VTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTPLQ 62
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399
+ EL+ L L PDV+ + ++ + + G + E LH +++ ++RR+K
Sbjct: 63 NNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDKKLV---ERLHMVLRP-FLLRRIK 118
Query: 400 KDVLAQLPVKRRQQVFLDVAEKDMR-QIYALFRELEVVKGKIKACKSEEEVQSLKFTEKN 458
DV LP K+ ++++ +++ L ++++++ K K + L K
Sbjct: 119 ADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL-LNILMQLRKC 177
Query: 459 LINKIYTDSAEAKIP--------------AVLD-YLETVIEAGCKFLIFAHHQPMLDAIH 503
+ D AE P VLD L + E G + LIF+ +LD +
Sbjct: 178 CNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 237
Query: 504 QLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIF 562
+ + R+DG TP RQ + + E + K +LS +AGG+G+ L A VI
Sbjct: 238 DYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVIL 297
Query: 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611
+ W P +QA DRAHRIGQ +V V+ + ++TV++ + + KL
Sbjct: 298 YDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKL 346
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 190 (71.9 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 80/277 (28%), Positives = 130/277 (46%)
Query: 166 IPAHIESKLLPFQRDGVRF------ALQHGGRI--LLADEMGLGKTIQAIAVATCFRDVW 217
I H+ L P QR+G+ F ++ GR +LADEMGLGKT+Q I++ +
Sbjct: 184 IDPHLVYHLRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 243
Query: 218 P---------VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
P LI+TP SL +W Q+WL SE + + + + ++ V T
Sbjct: 244 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLG---SERIKIFT-VDPDHK-----VEEFT 294
Query: 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAA--TLPIIKK 326
K PL + IISY+++L+ + + + F ++I DE H LKN+ K T A +LP K+
Sbjct: 295 KS--PLYSVL-IISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPCEKR 351
Query: 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE-EL 385
++L+GTP + E F ++ + P + ++ Y Y + + AS E EL
Sbjct: 352 ----IILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKEL 407
Query: 386 HN-------LMKATVMIRRLKKDVLAQLPVKRRQQVF 415
+ ++RR ++ + LP K VF
Sbjct: 408 GERRACELTCLTGLFILRRTQEVINKYLPPKIENVVF 444
Score = 186 (70.5 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 50/156 (32%), Positives = 79/156 (50%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMK 546
K ++ +++ L+ + ++ + C R+DG TP + RQ +V F K +LS K
Sbjct: 558 KVVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSK 617
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGGVGL L S +I ++ W P IQA R R GQ V++Y LL T+++ ++
Sbjct: 618 AGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQR 677
Query: 607 VRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTL 642
SK + G V+D L +S I+ S + K L
Sbjct: 678 QISKQDLSGAVVD-----LTKTSDHIQFSVEELKNL 708
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 197 (74.4 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 46/135 (34%), Positives = 74/135 (54%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHC-IRIDGGTPPASRQALV 529
K+ V L+ + G + L F + ML + ++FL+ + + +R+DG T ASRQ L+
Sbjct: 836 KMIVVESLLKIWHKQGHRVLFFTQSRQMLQIL-EVFLRDRNYSYLRMDGTTTIASRQPLI 894
Query: 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
T + E + +L+ + GG+G+ LT A VI + W P QA +RA RIGQ V
Sbjct: 895 TRYNEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 954
Query: 590 VYYLLANDTVDDIVW 604
VY LL T+++ ++
Sbjct: 955 VYRLLTAGTIEEKIY 969
Score = 184 (69.8 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 81/314 (25%), Positives = 137/314 (43%)
Query: 147 QRAIASA-SAAPDLR-EKYDQIPAHIESKLLPFQRDGVRFA----LQHGGRILLADEMGL 200
+R++A S D E+ ++P + KL +Q+ GVR+ Q G IL DEMGL
Sbjct: 473 ERSVAEELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGIL-GDEMGL 531
Query: 201 GKTIQAIA---------VATC-----FRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEI 246
GKTIQ IA + T ++ + P +I+ P+++ W W PP
Sbjct: 532 GKTIQIIAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWW--PPFR- 588
Query: 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADES 306
V +L + G ++ + G+ I SY + +Q+ + S ++ VI DE
Sbjct: 589 VAILHETGSYTNKKVKLI----REIASCHGIL-ITSYSYIRLMQDNIHSYDWHYVILDEG 643
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H ++N A T A + + ++LSG+P + EL+ + ++P + + +
Sbjct: 644 HKIRNPNAAVTLACKQF--RTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQ 701
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVM--------IRRLKKDVLAQL--PVKRRQQVFL 416
+ G Y AS + A V+ +RR+K DV L P K Q +F
Sbjct: 702 FSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFC 761
Query: 417 DVAEKDMRQIYALF 430
+ + + RQ+Y F
Sbjct: 762 RLTD-EQRQVYQNF 774
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 204 (76.9 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 55/168 (32%), Positives = 83/168 (49%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMK 546
K LIF+ +LD + F +K RIDG R+ + +F EK +LS +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDV 606
AGG+G+ LTAA T I + W P +QA DR HRIGQ V+VY L +++ V
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 607 VRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDD 654
SKL+ L V+ G + + S+P +++ + + LK +D
Sbjct: 662 AYSKLK-LEHVVIGQGQFHQERAKS--STPLEEEDILALLKEDETAED 706
Score = 169 (64.5 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 78/306 (25%), Positives = 136/306 (44%)
Query: 173 KLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSS 226
+L +Q GV++ + Q+G +LAD+MGLGKTIQ I + + P L++ P S
Sbjct: 201 QLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLS 260
Query: 227 LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVV 286
+W I ++ PS ++ G N+ + + + + I SY+V
Sbjct: 261 TLSNWFNEIARFT---PSINAIIYH--GDKNQRD-ELRRKHMPKTVGPKFPIVITSYEVA 314
Query: 287 LK-LQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIEL 345
+ + IL +K V+ DE H LKN + K + K LLL+GTP + EL
Sbjct: 315 MNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHL--KMDNKLLLTGTPLQNNLSEL 372
Query: 346 FKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE---------LHNLMKATVMIR 396
+ L + PD++ + H+ + + EE LH +++ ++ R
Sbjct: 373 WSLLNFILPDIFTS-HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFIL-R 430
Query: 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEV--QSLKF 454
R+K DV LP R++++ + D ++ F+E +V ++A E + Q K
Sbjct: 431 RMKCDVELSLP--RKKEIIMYATMTDHQK---KFQE-HLVNNTLEAHLGENAIRGQGWKG 484
Query: 455 TEKNLI 460
NL+
Sbjct: 485 KLNNLV 490
Score = 41 (19.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 446 EEEVQSLKFTEKNLINK-IYTDSAEAKIPAVLDYLETVIEA 485
EE++ +L ++ +K I TD ++A + +LD + I A
Sbjct: 691 EEDILALLKEDETAEDKLIQTDISDADLDRLLDRSDLTITA 731
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 192 (72.6 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 84/301 (27%), Positives = 141/301 (46%)
Query: 139 IENLHP---LVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRI 192
I++ HP V R ASA +L +Y ++L +Q +GV + L +
Sbjct: 395 IQSRHPELKRVNRPQASAWKKLELSHEYKN-----RNQLREYQLEGVNWLLFNWYNRQNC 449
Query: 193 LLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVV 249
+LADEMGLGKTIQ+IA +V P L++ P S +W W + + IV
Sbjct: 450 ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEM--NTIVYH 507
Query: 250 LSQLGGSNRSGFTIVSSNTK-RNIPLDGLFN--IISYDVVLKLQNILMSSNFKIVIADES 306
S + + +++ R IP F+ I +++++L L ++ VI DE+
Sbjct: 508 GSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEA 567
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H LKN K + + ++ +LL+GTP + ELF L L P + + E+
Sbjct: 568 HRLKNRNCKLLDSLKHM--DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEF--- 622
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI 426
K FG + ++L ++K +M+RRLK+DV L K Q+ ++V ++++
Sbjct: 623 -LKD--FGDLKTEEQVQKLQAILKP-MMLRRLKEDVEKNLAPK--QETIIEVELTNIQKK 676
Query: 427 Y 427
Y
Sbjct: 677 Y 677
Score = 191 (72.3 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 48/139 (34%), Positives = 75/139 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + ++++ RIDG RQA + F
Sbjct: 754 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 813
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 814 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 873
Query: 593 LLANDTVDDIVWDVVRSKL 611
L+ ++ + ++D KL
Sbjct: 874 LITRNSYEREMFDKASLKL 892
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 200 (75.5 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 79/301 (26%), Positives = 148/301 (49%)
Query: 138 EIENLHPLVQRAIASASAAPDLREKYDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRIL 193
+IE+ P ++R A++A +K D+ + ++L +Q +GV + L + +
Sbjct: 813 KIESRQPRLKRTPRPAASA---WKKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCI 869
Query: 194 LADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVL 250
LADEMGLGKTIQ+IA+ + P +I+ P S +W W ++ + IV
Sbjct: 870 LADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFSNWTDM--NAIVYHG 927
Query: 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISYDVVLKLQNILMSSNFKIVIADES 306
S + + + K ++ + G + I +++++L L +++ V+ DE+
Sbjct: 928 SLASRQMIQQYEMYCKDDKGHL-IPGAYKFDALITTFEMILSDCPELREISWRCVVIDEA 986
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H LKN K +L +++ ++ +LL+GTP + ELF L L P + + E+
Sbjct: 987 HRLKNRNCK-LLDSLKMLE-IEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLRE 1044
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI 426
FG + ++L +++K +M+RRLK+DV L K Q+ ++V D+++
Sbjct: 1045 ------FGDLKTEEQVQKLQSILKP-MMLRRLKEDVEKNLAPK--QETIIEVELTDVQKK 1095
Query: 427 Y 427
Y
Sbjct: 1096 Y 1096
Score = 192 (72.6 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 54/159 (33%), Positives = 79/159 (49%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
+LD L ++AG K LIF+ LD + + K+ RIDG RQA + F
Sbjct: 1174 LLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1233
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T + + W P + +QA+ R HRIGQ +V VY
Sbjct: 1234 KPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1293
Query: 593 LLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQ 631
L+ ++ + + D KL VL + E S Q
Sbjct: 1294 LITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQ 1332
Score = 45 (20.9 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 218 PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG-------GSNRSGFTIVSSNTKR 270
P LI TP S+ L QQ IP E+ V + + SN SG V ++
Sbjct: 66 PALIPTPVSVPLQ-NLQTQQLSQIP-HEVSVASAPISIQPSLSVASNSSGAATVLLSSSL 123
Query: 271 NIPLDG 276
+P+ G
Sbjct: 124 GVPVSG 129
Score = 42 (19.8 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 14 LDFLEREALQQIAQR---HSKPFSDSPSYKVEALPQGSRTLPLS 54
L L+ + L QI S P S PS V + G+ T+ LS
Sbjct: 77 LQNLQTQQLSQIPHEVSVASAPISIQPSLSVASNSSGAATVLLS 120
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 33 FSDSPSYKVEALPQ 46
F D+P + +++LP+
Sbjct: 9 FDDTPLFNLDSLPE 22
Score = 38 (18.4 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 432 ELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484
E+E ++ + K+EE+VQ L+ K ++ + + E + ET+IE
Sbjct: 1038 EIEFLR-EFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQ---ETIIE 1086
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 205 (77.2 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK-KKVHCIRIDGGTPPASRQALV 529
K+ V L+ + G + L+F+ + MLD + ++FL+ +K +++DG T ASRQ L+
Sbjct: 829 KMIVVESLLKIWHKQGQRVLLFSQSRQMLDIL-EVFLRAQKYSYLKMDGTTTIASRQPLI 887
Query: 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
T + E + +L+ + GG+G+ LT A+ VI + W P QA +RA RIGQ V
Sbjct: 888 TRYNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 947
Query: 590 VYYLLANDTVDDIVW 604
VY LL T+++ ++
Sbjct: 948 VYRLLTAGTIEEKIY 962
Score = 184 (69.8 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 77/295 (26%), Positives = 131/295 (44%)
Query: 165 QIPAHIESKLLPFQRDGVRFA----LQHGGRILLADEMGLGKTIQAIA---------VAT 211
++P + KL +Q+ GVR+ Q G IL DEMGLGKTIQ IA + T
Sbjct: 487 KMPGFLFKKLFKYQQTGVRWLWELHCQQAGGIL-GDEMGLGKTIQIIAFLAGLSYSKIRT 545
Query: 212 C-----FRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
F + P +I+ P+++ W W PP V +L + G FT
Sbjct: 546 RGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWW--PPFR-VAILHETGS-----FTHKKE 597
Query: 267 NTKRNIP-LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325
R+I G+ I SY + +Q+ + ++ VI DE H ++N A T A
Sbjct: 598 KLVRDIAHCHGIL-ITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQF-- 654
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE-- 383
+ + ++LSG+P + EL+ + ++P + + ++ G Y AS +
Sbjct: 655 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 714
Query: 384 ---ELHNLMKATV---MIRRLKKDVLAQL--PVKRRQQVFLDVAEKDMRQIYALF 430
+ +++ T+ ++RR+K DV L P K Q +F + + + ++Y F
Sbjct: 715 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTD-EQHKVYQNF 768
Score = 41 (19.5 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 622 ENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKY 663
+ S + S+ + +++TL+ L+ +S+H++ K+
Sbjct: 1163 DTSFQKHKSKTKHRVTEEETLEKHLRPKQKPKNSKHRRDAKF 1204
Score = 40 (19.1 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 44 LPQGSRTLPLSVAPAPKGSLGDFSKEQVP 72
LP+G R L + P +G+ E +P
Sbjct: 350 LPKGKRHLEYDMRPEAEGASEGEESEYLP 378
Score = 39 (18.8 bits), Expect = 8.3e-25, Sum P(4) = 8.3e-25
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 634 SSPAKQKTLDSFLKRCNNVDDSEH 657
+SP K+K+ D LK+ SEH
Sbjct: 1334 ASP-KEKSQDGILKKDGKDSVSEH 1356
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 197 (74.4 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 86/293 (29%), Positives = 135/293 (46%)
Query: 166 IPAHIESKLLPFQRDGVRF------ALQHGGRI--LLADEMGLGKTIQAIAVATCFRDVW 217
I H+ L P Q++G+ F ++ GR +LADEMGLGKT+Q I++ +
Sbjct: 288 IDPHLVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 218 P---------VLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
P LI+TP SL +W Q+WL I +I V Q ++ V T
Sbjct: 348 PYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTV-DQ---DHK-----VEEFT 398
Query: 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
K P + IISY+++L+ + + + F ++I DE H LKN+ K T A + + +
Sbjct: 399 KS--PFYSVL-IISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALISL--SCE 453
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE-ELHN 387
++L+GTP + E F ++ + P + ++ Y Y + + AS E EL
Sbjct: 454 KRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGE 513
Query: 388 LMKATV------MIRRLKKDVLAQ-LPVKRRQQVFLDVAEKDMRQIYALFREL 433
A + I R ++V+ Q LP K VF QI AL+R+L
Sbjct: 514 QRAAELTCLTGLFILRRTQEVINQYLPPKIENVVF---CRPGALQI-ALYRKL 562
Score = 181 (68.8 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 54/183 (29%), Positives = 87/183 (47%)
Query: 463 IYTDSAEAKIPAVLDYLETVIEA--GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGT 520
++T+ K+ + L + E K ++ +++ LD + ++ + R+DG T
Sbjct: 635 MFTEEESGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQT 694
Query: 521 PPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRA 579
P + RQ +V F K +LS KAGGVGL L S +I ++ W P IQA R
Sbjct: 695 PISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 754
Query: 580 HRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQ 639
R GQ V++Y LL T+++ ++ SK G V+D L +S I+ S +
Sbjct: 755 WRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVD-----LSKTSDHIQFSVEEL 809
Query: 640 KTL 642
K L
Sbjct: 810 KNL 812
Score = 40 (19.1 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 39 YKVEALPQGSRTLPLSVAPAPKGSLGDFSKEQVPKLSVKFF 79
Y +EA + + L +V APK +E+ P VK+F
Sbjct: 86 YCLEASTKTTLDLHHTVHSAPKEITVSKGQEEKPDSLVKYF 126
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 201 (75.8 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547
K L+F+ +LD + Q + + R+DG T R +V EF DV ++S A
Sbjct: 537 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMA 596
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+GL A+ V+ + +W P + +QA DRA+RIGQ V V L++ TV++I++ +
Sbjct: 597 GGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMY-LR 655
Query: 608 RSKLENLGQVLDGHENS 624
+ + L V+ G EN+
Sbjct: 656 QIYKQQLHCVVVGSENA 672
Score = 118 (46.6 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 28/64 (43%), Positives = 36/64 (56%)
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQH---GGRILLADEMGLGKTI 204
R S+S A L + D IP I L +QR+G RF H GG +L D+MGLGKT+
Sbjct: 108 RKFPSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTV 167
Query: 205 QAIA 208
Q I+
Sbjct: 168 QVIS 171
Score = 94 (38.1 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 60/273 (21%), Positives = 108/273 (39%)
Query: 188 HGGRILLADEMGLGKTIQAIAVATCF-------RDV---WPVLILTPSSLRLHWAAMIQQ 237
HGG +L D+MGLGKT+Q I+ D+ P +L + +
Sbjct: 151 HGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKM 210
Query: 238 WLNIPPSEIVVVLS-QLGGSNRSGFTIVSSNTKRN--IPLDGL---FNIISYDVVLKLQN 291
+L + P ++ +L T++ N K N I + + +Y+ + +
Sbjct: 211 FLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLD 270
Query: 292 ILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEA 351
L S + VI DE+H +KN +A+ T + K + L+GT + EL+ ++
Sbjct: 271 ELNSLEWSAVIVDEAHRIKNPKARVTEVMKAL--KCNVRIGLTGTILQNNMKELWCVMDW 328
Query: 352 LYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE------ELHNLMKATV--MIRRLKKDVL 403
P + + + ++ G A+ E + L K +RR K +
Sbjct: 329 AVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIK 388
Query: 404 AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV 436
QLP K + V+ + + + +Y E E V
Sbjct: 389 DQLPKKEDRMVYCSLTDFQ-KAVYQTVLETEDV 420
Score = 39 (18.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 441 KACKSEEEVQSLKFTE--KNLINKIYTDSAEAKIP 473
K C E ++S+ E K+ +Y D E KIP
Sbjct: 44 KLC--EASIKSITVDENGKSFAVVLYADFQERKIP 76
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 198 (74.8 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 46/135 (34%), Positives = 77/135 (57%)
Query: 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALV 529
K+ V L+ + G + L+F+ + ML + ++FL+ K +++DG T ASRQ L+
Sbjct: 834 KMIVVESLLKIWHKQGQRVLLFSQSRQMLHIL-EVFLRAHKYSYLKMDGTTTIASRQPLI 892
Query: 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589
T++ E + +L+ + GG+G+ LT A+ VI + W P QA +RA RIGQ V
Sbjct: 893 TKYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 952
Query: 590 VYYLLANDTVDDIVW 604
VY LL T+++ ++
Sbjct: 953 VYRLLTAGTIEEKIY 967
Score = 179 (68.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 76/300 (25%), Positives = 132/300 (44%)
Query: 165 QIPAHIESKLLPFQRDGVRFA----LQHGGRILLADEMGLGKTIQAIA---------VAT 211
++P + KL +Q+ GVR+ Q G IL DEMGLGKTIQ IA + T
Sbjct: 492 KVPGFLFKKLFKYQQTGVRWLWELHCQQAGGIL-GDEMGLGKTIQIIAFLAGLSYSKIRT 550
Query: 212 C-----FRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266
F + P LI+ P+++ W W PP V +L + G +V
Sbjct: 551 RGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWW--PPFR-VAILHETGSCAHRKERLV-- 605
Query: 267 NTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK 326
+ + G+ I SY + +Q+ + ++ VI DE H ++N A T A +
Sbjct: 606 --RDIVHCHGVL-ITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQF--R 660
Query: 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE--- 383
+ ++LSG+P + EL+ + +P + + ++ G Y AS +
Sbjct: 661 TPHRIILSGSPMQNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT 720
Query: 384 --ELHNLMKATV---MIRRLKKDVLAQL--PVKRRQQVFLDVAEKDMRQIYALFRELEVV 436
+ +++ T+ ++RR+K DV L P K Q +F + + + ++Y F + + V
Sbjct: 721 AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTD-EQHKVYQNFIDSKAV 779
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 319 (117.4 bits), Expect = 8.3e-25, P = 8.3e-25
Identities = 130/506 (25%), Positives = 243/506 (48%)
Query: 173 KLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAV-ATCFR--DV-WPVLILTPS 225
KL +Q +G+ +A G +LADEMGLGKTIQ+I++ A+ F D+ P L++ P
Sbjct: 404 KLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPL 463
Query: 226 SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYD 284
S W QW P +VV + + + + TK+ + ++ + + +Y+
Sbjct: 464 STMAAWQKEFAQWA--PEMNLVVYMGDVVSRDMIRQYEWFVGGTKK-MKINAI--LTTYE 518
Query: 285 VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIE 344
++LK + L S ++ ++ DE+H LKN ++ + + + LL++GTP + E
Sbjct: 519 ILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQF--RFNHKLLITGTPLQNSLKE 576
Query: 345 LFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404
L+ L + P+ + E+ + + GI ++ H++L + V + ++K +
Sbjct: 577 LWALLHFIMPEKFDCWEEFETAHNESNHKGI---SALHKKLEPFLLRRVK-KDVEKSLPP 632
Query: 405 QLPVKRRQQVFLDVAEKDMRQ--IYALFRELEV-VKGKIKACKSEEEVQSLK--FTEKNL 459
+ ++ +V + +K + + +REL VKG I + V LK +L
Sbjct: 633 K--TEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNL--VMELKKCCNHASL 688
Query: 460 INK---IYTDSAEAKIPAVLD------YLETVI----EAGCKFLIFAHHQPMLDAIHQLF 506
+ IY D A+ ++ +L L+ ++ + G + LIF+ MLD + +
Sbjct: 689 TRQYDHIY-DDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYL 747
Query: 507 LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAEL 565
++ R+DG R+ + + A +LS +AGG+G+ L A TVI +
Sbjct: 748 QLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDS 807
Query: 566 SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL--ENLG-QVLDGHE 622
W P + +QA RAHRIGQ +VN+Y L+ +V++ + + + KL ++L Q +D
Sbjct: 808 DWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMDTTG 867
Query: 623 NS-LEVSSSQIRSSPAKQKTLDSFLK 647
+ L +++ S P ++ L + LK
Sbjct: 868 KTVLSKNATASGSVPFDKQELSAILK 893
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 318 (117.0 bits), Expect = 9.8e-25, P = 9.8e-25
Identities = 149/553 (26%), Positives = 247/553 (44%)
Query: 157 PDLREKYDQIPAHIES-KLLPFQRDGVRFA--LQHGGRI-LLADEMGLGKTIQAIAVAT- 211
P R K ++ P++I+ ++ FQ G+ + L H +LADEMGLGKT+Q + +
Sbjct: 373 PPYR-KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSY 431
Query: 212 ---CFRDVWPVLILTPSSLRLHWAAMIQQWLNIPP-SEIVVVLSQLGGSNRSGFTIVSSN 267
+ P LI+ P S W + W P + I + +N + S
Sbjct: 432 LVHSLKQHGPFLIVVPLSTVPAWQETLANWT--PDLNSICYTGNTESRANIREYEFYLST 489
Query: 268 TKRNIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325
R + FNI+ +Y+ +LK + L + ++ + DE+H LKN+++ TL +
Sbjct: 490 NSRKLK----FNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESS-LYETLSQFR 544
Query: 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL 385
A LL++GTP + EL + L P G Y + + A ++
Sbjct: 545 TAN-RLLITGTPLQNNLKELASLVNFLMP---------GKFYIRDELNFDQPNAEQERDI 594
Query: 386 HNLMKAT--VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR-QIYA--LFRELEVV---- 436
+L + ++RRLKKDV LP K + L V DM+ + Y L + +
Sbjct: 595 RDLQERLQPFILRRLKKDVEKSLPSKSER--ILRVELSDMQTEWYKNILTKNYRALTGHT 652
Query: 437 --KGKIKACKSEEEVQSLK-----F---TEKNLINKIYT--DSAEAKIP-----AVLD-Y 478
+G++ E++ + F EK ++ + T D+ I +LD
Sbjct: 653 DGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKL 712
Query: 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDV 538
L+ + G + LIF+ ML+ + + + + R+DG P + R+ + F D
Sbjct: 713 LQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSP 772
Query: 539 KAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597
+LS +AGG+G+ L A TVI + W P +QA RAHRIGQ + VNVY L+ D
Sbjct: 773 DFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKD 832
Query: 598 TVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQ--KTLDSFLK--RCNNVD 653
TV++ + + R K+ +L+ SL V+ S K + L + LK N
Sbjct: 833 TVEEDILERARRKM-----ILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFK 887
Query: 654 DSEHQQKLKYRKL 666
+E+Q+KL+ L
Sbjct: 888 ATENQKKLENMNL 900
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 191 (72.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 48/139 (34%), Positives = 75/139 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + ++++ RIDG RQA + F
Sbjct: 1137 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 1197 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1256
Query: 593 LLANDTVDDIVWDVVRSKL 611
L+ ++ + ++D KL
Sbjct: 1257 LITRNSYEREMFDKASLKL 1275
Score = 189 (71.6 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 83/301 (27%), Positives = 141/301 (46%)
Query: 139 IENLHP---LVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRI 192
I++ HP V R A+A +L +Y ++L +Q +GV + L +
Sbjct: 778 IQSRHPELKRVNRPQANAWKKLELSHEYKN-----RNQLREYQLEGVNWLLFNWYNRQNC 832
Query: 193 LLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVV 249
+LADEMGLGKTIQ+IA +V P L++ P S +W W + + IV
Sbjct: 833 ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEM--NTIVYH 890
Query: 250 LSQLGGSNRSGFTIVSSNTK-RNIPLDGLFN--IISYDVVLKLQNILMSSNFKIVIADES 306
S + + +++ R IP F+ I +++++L L ++ VI DE+
Sbjct: 891 GSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEA 950
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H LKN K + + ++ +LL+GTP + ELF L L P + + E+
Sbjct: 951 HRLKNRNCKLLDSLKHM--DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEF--- 1005
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI 426
K FG + ++L ++K +M+RRLK+DV L K Q+ ++V ++++
Sbjct: 1006 -LKD--FGDLKTEEQVQKLQAILKP-MMLRRLKEDVEKNLAPK--QETIIEVELTNIQKK 1059
Query: 427 Y 427
Y
Sbjct: 1060 Y 1060
Score = 37 (18.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 444 KSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484
K+EE+VQ L+ K ++ + + E + ET+IE
Sbjct: 1013 KTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQ---ETIIE 1050
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 191 (72.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 48/139 (34%), Positives = 75/139 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + ++++ RIDG RQA + F
Sbjct: 1139 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1198
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 1199 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1258
Query: 593 LLANDTVDDIVWDVVRSKL 611
L+ ++ + ++D KL
Sbjct: 1259 LITRNSYEREMFDKASLKL 1277
Score = 189 (71.6 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 83/301 (27%), Positives = 141/301 (46%)
Query: 139 IENLHP---LVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFAL---QHGGRI 192
I++ HP V R A+A +L +Y ++L +Q +GV + L +
Sbjct: 780 IQSRHPELRRVNRPQANAWKKLELSHEYKN-----RNQLREYQLEGVNWLLFNWYNRQNC 834
Query: 193 LLADEMGLGKTIQAIAVATCFRDVW---PVLILTPSSLRLHWAAMIQQWLNIPPSEIVVV 249
+LADEMGLGKTIQ+IA +V P L++ P S +W W + + IV
Sbjct: 835 ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEM--NTIVYH 892
Query: 250 LSQLGGSNRSGFTIVSSNTK-RNIPLDGLFN--IISYDVVLKLQNILMSSNFKIVIADES 306
S + + +++ R IP F+ I +++++L L ++ VI DE+
Sbjct: 893 GSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEA 952
Query: 307 HFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNR 366
H LKN K + + ++ +LL+GTP + ELF L L P + + E+
Sbjct: 953 HRLKNRNCKLLDSLKHM--DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEF--- 1007
Query: 367 YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI 426
K FG + ++L ++K +M+RRLK+DV L K Q+ ++V ++++
Sbjct: 1008 -LKD--FGDLKTEEQVQKLQAILKP-MMLRRLKEDVEKNLAPK--QETIIEVELTNIQKK 1061
Query: 427 Y 427
Y
Sbjct: 1062 Y 1062
Score = 37 (18.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 444 KSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484
K+EE+VQ L+ K ++ + + E + ET+IE
Sbjct: 1015 KTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQ---ETIIE 1052
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 316 (116.3 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 131/489 (26%), Positives = 217/489 (44%)
Query: 161 EKYDQIPAHIES-KLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATCF--- 213
EK + P I++ +L FQ G+ F +LADEMGLGKT+Q +A +
Sbjct: 348 EKLFKQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYA 407
Query: 214 -RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRS--GFTIVSSNTKR 270
R P L++ P S W ++W P V L G + ++ + + + N K
Sbjct: 408 RRQNGPHLVVVPLSTVPAWQETFEKWA--PDVNCVYYLGN-GEARKTIREYELYNQNRKP 464
Query: 271 NIPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328
FN++ +Y+ +LK +N L + ++ + DE+H LKNA++ A K
Sbjct: 465 K------FNVLLTTYEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGF--KVS 516
Query: 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL 388
LL++GTP + EL L P + E F + + + +L
Sbjct: 517 NRLLITGTPLQNNVKELAALCNFLMPGKFTIDQEID--------FETID-SEQEQYIKDL 567
Query: 389 MK--ATVMIRRLKKDVLAQLPVKRRQ--QVFL-DVAEKDMRQI----YALFR------EL 433
K + ++RRLKKDV LP K + +V L D+ + + I YA ++
Sbjct: 568 QKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQI 627
Query: 434 EVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV------LDYLETVI---- 483
++ + K+ E +++K + S E + + + LE ++
Sbjct: 628 SLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLR 687
Query: 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-V 542
+ G + LIF+ MLD + K R+DG P + R+ + F A +
Sbjct: 688 KEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFL 747
Query: 543 LSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDI 602
LS +AGG+G+ L A TVI + W P +QA RAHRIGQ + V+VY ++ DTV++
Sbjct: 748 LSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQ 807
Query: 603 VWDVVRSKL 611
+ + R K+
Sbjct: 808 ILERARKKM 816
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 255 (94.8 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 81/268 (30%), Positives = 129/268 (48%)
Query: 357 YKNVHEYGNR---YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQ 413
++N E+ R Y + A E L + + + +++R K DV A LP K Q
Sbjct: 611 FRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDAI-SPYLLQRFKIDVAADLPKKSEQV 669
Query: 414 VFLDVAEKDMRQIYALF---RELE-VVKGKI----------KACKSEE-EVQSLKFTEKN 458
+F + K RQ Y F E++ +++G+ K C + + L + + N
Sbjct: 670 LFCRLT-KPQRQAYEAFLGSEEMQSILRGRRQVLYGVDILRKICNHPDLQNHKLLYAKPN 728
Query: 459 LINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK--VHCIRI 516
N T S K+ V LE E G K L+FA H+ MLD + + F+K + R+
Sbjct: 729 YGNP--TKSG--KMQVVRSLLELWKETGHKTLLFAQHRIMLDILEK-FVKSLSGFNYRRM 783
Query: 517 DGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAE 576
DG TP RQ +V EF + D+ +L+ K GG+G+ LT A VI + W P +QA
Sbjct: 784 DGTTPIQHRQTMVDEFNKDPDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQAR 843
Query: 577 DRAHRIGQVSSVNVYYLLANDTVDDIVW 604
+RA R+GQ V +Y L+ T+++ ++
Sbjct: 844 ERAWRLGQKRDVTIYRLMTAGTIEEKIY 871
Score = 119 (46.9 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 38/122 (31%), Positives = 60/122 (49%)
Query: 157 PDLR-EKYDQIPAHIESKLLPFQRDGVRFALQ-HGGRI--LLADEMGLGKTIQAIAVATC 212
PDL + +IP I L +Q+ GV++ + H ++ ++ DEMGLGKTIQAIA
Sbjct: 380 PDLHLDNGYRIPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDEMGLGKTIQAIAFLAG 439
Query: 213 F----RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268
R P++++ P+++ W +W PP V +L G SG + S +
Sbjct: 440 LHYSKRLTKPIIVVCPATVMKQWVNEFHRWW--PPFR-VSILHTSG----SGMVNIKSES 492
Query: 269 KR 270
R
Sbjct: 493 SR 494
Score = 117 (46.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 48/199 (24%), Positives = 88/199 (44%)
Query: 254 GGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ 313
GGS+ SG KR + +G + +Y + ++L+ + I DE H ++N
Sbjct: 506 GGSS-SGLKAARKVVKRVVE-EGHVLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPN 563
Query: 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDV------YKNVHEYGNR- 366
T + + + ++LSGTP + EL+ + ++P ++N E+ R
Sbjct: 564 TSITMHAKEL--RTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQ 621
Query: 367 --YCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMR 424
Y + A E L + + + +++R K DV A LP K Q +F + K R
Sbjct: 622 GGYANASNLQVQTAAKCAETLKDAI-SPYLLQRFKIDVAADLPKKSEQVLFCRLT-KPQR 679
Query: 425 QIYALF---RELE-VVKGK 439
Q Y F E++ +++G+
Sbjct: 680 QAYEAFLGSEEMQSILRGR 698
Score = 40 (19.1 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 4 DDEWEFSAEELDFLERE 20
D E EFS ++ DF+ E
Sbjct: 283 DPEQEFSEDDEDFVTEE 299
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 197 (74.4 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 53/162 (32%), Positives = 85/162 (52%)
Query: 468 AEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQ 526
A K+ ++D L ++AG + LIF+ LD + ++++ RIDG RQ
Sbjct: 1340 AAGKL-VLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQ 1398
Query: 527 ALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQV 585
A + F D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ
Sbjct: 1399 AAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQS 1458
Query: 586 SSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 624
SV +Y L+ ++ + ++D KL + + Q + G EN+
Sbjct: 1459 KSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1500
Score = 181 (68.8 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 71/264 (26%), Positives = 127/264 (48%)
Query: 174 LLPFQRDGVRFAL--QHGGR-ILLADEMGLGKTIQAIAVA--TCFRDVW-PVLILTPSSL 227
L +Q +GV + L + R +LADEMGLGKTIQ+I + + P L++ P S
Sbjct: 1012 LREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1071
Query: 228 RLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN----IISY 283
+W + W + + +V SQ + + +T+ I + G + I ++
Sbjct: 1072 IPNWEREFRTWTEL--NVVVYHGSQASRKTIQAYEMYYRDTQGRI-IKGAYKFHAVITTF 1128
Query: 284 DVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPI 343
+++L L + ++ VI DE+H LKN K L ++ ++ +LL+GTP +
Sbjct: 1129 EMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEG-LKMMDM-EHKVLLTGTPLQNTVE 1186
Query: 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403
ELF L L PD + + + FG + ++L ++K +M+RRLK+DV
Sbjct: 1187 ELFSLLNFLEPDRFPSESTFMQE------FGDLKTEEQVQKLQGILKP-MMLRRLKEDVE 1239
Query: 404 AQLPVKRRQQVFLDVAEKDMRQIY 427
L K ++ ++V ++++ Y
Sbjct: 1240 KNLAPK--EETIIEVELTNVQKKY 1261
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 576 EDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR-SKL--ENLGQVLDGHENSLEVSSSQI 632
E+ A+ + Q+S + LL ++ + SK E++ Q+L ++ + S
Sbjct: 1498 ENAANGVQQLSKKEIEDLLRKGAYGALMEEEDEGSKFCEEDIDQILQRRTQTITIESEGK 1557
Query: 633 RSSPAKQKTLDSFLKRCNNVDDSEHQQK 660
S+ AK + + + +++D + QK
Sbjct: 1558 GSTFAKASFVSAGNRTDISLEDPDFWQK 1585
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 204 (76.9 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
Identities = 47/137 (34%), Positives = 75/137 (54%)
Query: 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547
K L+F+ +LD + Q + + R+DG T R +V EF DV ++S A
Sbjct: 524 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMA 583
Query: 548 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607
GG+GL A+ VI + +W P + +QA DRA+RIGQ V V L++ TV++I++ +
Sbjct: 584 GGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMY-LR 642
Query: 608 RSKLENLGQVLDGHENS 624
+ + L V+ G EN+
Sbjct: 643 QVYKQQLHCVVVGSENA 659
Score = 113 (44.8 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 148 RAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQH---GGRILLADEMGLGKTI 204
R I S ++A L E D IP I L +QR+G +F +H G +L D+MGLGKTI
Sbjct: 96 RKIPSLASAFQLSEDGDSIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTI 155
Query: 205 QAIA 208
Q I+
Sbjct: 156 QVIS 159
Score = 87 (35.7 bits), Expect = 4.2e-24, Sum P(3) = 4.2e-24
Identities = 60/272 (22%), Positives = 109/272 (40%)
Query: 190 GR-ILLADEMGLGKTIQAIAVATCF-------RDV---WPVLILTPSSLRLHWAAMIQQW 238
GR +L D+MGLGKTIQ I+ D+ P +L + A + +
Sbjct: 140 GRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAK-KMF 198
Query: 239 LNIPPSEIVVVLS-QLGGSNRSGFTIVSSNTKRN--IPLDGL---FNIISYDVVLKLQNI 292
L + P ++ +L T++ + K N + L + +Y+ +
Sbjct: 199 LIVAPLSVLYNWKDELDTWGYFRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEE 258
Query: 293 LMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEAL 352
L S + +I DE+H +KN +A+ T + K + + L+GT + EL+ ++
Sbjct: 259 LNSLEWSAIIVDEAHRIKNPKARVTEVMKAV--KCKVRIGLTGTVLQNNMKELWCVMDWA 316
Query: 353 YPDVYKNVHEYGNRYCKGGVFGIYQGASNHE------ELHNLMKATV--MIRRLKKDVLA 404
P + + + ++ G A+ E +H L K +RR K +
Sbjct: 317 VPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKG 376
Query: 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVV 436
QLP K + V+ + + + +Y E E V
Sbjct: 377 QLPKKEDRMVYCSLTDFQ-KAVYQTVLETEDV 407
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 190 (71.9 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 52/156 (33%), Positives = 83/156 (53%)
Query: 475 VLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533
++D L ++AG K LIF+ LD + + K+ RIDG RQA + F
Sbjct: 712 LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 771
Query: 534 EKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592
+ D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY
Sbjct: 772 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYR 831
Query: 593 LLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 625
L+ ++ + ++D KL + + Q + G E+++
Sbjct: 832 LVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 867
Score = 176 (67.0 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 94/370 (25%), Positives = 167/370 (45%)
Query: 172 SKLLPFQRDGVRFAL--QHGGR-ILLADEMGLGKTIQAIA-----VATCFRDVWPVLILT 223
++L +Q +G+ + L + R +LADEMGLGKTIQ+I + T R P LI+
Sbjct: 384 NQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRG--PFLIIA 441
Query: 224 PSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFN---- 279
P S +W + W +I + +V S + + + +++ I + G +
Sbjct: 442 PLSTIANWEREFRTWTDI--NVVVYHGSLISRQMIQQYEMYFRDSQGRI-IRGAYRFQAI 498
Query: 280 IISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339
I +++++L L + ++ VI DE+H LKN K L ++ ++ +LL+GTP
Sbjct: 499 ITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEG-LKLMN-LEHKVLLTGTPLQ 556
Query: 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399
+ ELF L L P + + + FG + ++L ++K +M+RRLK
Sbjct: 557 NTVEELFSLLHFLEPLRFPSESTFMQE------FGDLKTEEQVQKLQAILKP-MMLRRLK 609
Query: 400 KDVLAQLPVKRRQ--QVFL-DVAEKDMRQIYAL-FRELEVVKGKIKACKSEEEVQSLK-- 453
+DV +L K +V L ++ +K R I F L G+ + L+
Sbjct: 610 EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKC 669
Query: 454 ----FTEKNLINKIYTDSAEAKIPAVLDY-LETVIEAGCKFLIFAHHQPMLDAI-HQ-LF 506
+ K KI + + PA D+ L+ +I++ K ++ P + A H+ L
Sbjct: 670 CNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI 729
Query: 507 LKKKVHCIRI 516
+ V C+ I
Sbjct: 730 FSQMVRCLDI 739
Score = 37 (18.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 343 IELFKQLEALYPD 355
IE F+QL+A PD
Sbjct: 347 IEEFEQLQASRPD 359
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 313 (115.2 bits), Expect = 5.0e-24, P = 5.0e-24
Identities = 139/520 (26%), Positives = 238/520 (45%)
Query: 159 LREKYDQIPAHIESKLLPFQRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVAT-CFRD 215
L+++ I H +L +Q +G+ A G +LADEMGLGKTIQ I+ F +
Sbjct: 463 LKKQPSYIGGHESLELRDYQLNGLWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHE 522
Query: 216 ---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRN 271
P L++ P S W IQ W P VV L + N + TKR
Sbjct: 523 HQLYGPFLLVVPLSTLTSWQREIQTWA--PQMNAVVYLGDITSRNMIRTHEWMHPQTKR- 579
Query: 272 IPLDGLFNII--SYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329
L FNI+ +Y+++LK ++ L N+ + DE+H LKN + + ++
Sbjct: 580 --LK--FNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDLVT---- 631
Query: 330 ALLLSGT-PALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL 388
+ S T P+ + P EL+ L + P+ + + ++ + KG +G Y AS H+EL
Sbjct: 632 --IDSDTAPSCTIPQELWS-LHFIMPEKFSSWEDFEEEHGKGREYG-Y--ASLHKELEPF 685
Query: 389 MKATVMIRRLKKDVLAQLP-VKRRQQVFLDVAEKDM---RQIYALFRELE-VVKG----- 438
+ V + ++K + A++ + R + L R AL + + G
Sbjct: 686 LLRRVK-KDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIM 744
Query: 439 -KIKACKSEEEVQSLKFTEKN-LINKI----YTDSAEAKIPAVLDYLETVIEAGCKFLIF 492
++K C + +K + N NK + + K+ + L + E G + LIF
Sbjct: 745 MELKKCCNH--CYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIF 802
Query: 493 AHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVG 551
+ MLD + + ++ R+DG R+ + F E + +LS +AGG+G
Sbjct: 803 SQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLG 862
Query: 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK- 610
+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + + + K
Sbjct: 863 INLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKM 922
Query: 611 -LENLG-QVLDGHENS-LEVSSSQIRSSPAKQKTLDSFLK 647
L++L Q +D + L S+ S+P ++ L + LK
Sbjct: 923 VLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILK 962
WARNING: HSPs involving 301 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 666 666 0.00098 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 551
No. of states in DFA: 625 (66 KB)
Total size of DFA: 336 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.71u 0.12s 59.83t Elapsed: 00:00:03
Total cpu time: 59.79u 0.12s 59.91t Elapsed: 00:00:03
Start: Sat May 11 01:38:00 2013 End: Sat May 11 01:38:03 2013
WARNINGS ISSUED: 2