Query 005980
Match_columns 666
No_of_seqs 372 out of 2876
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 16:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1000 Chromatin remodeling p 100.0 3.5E-88 7.5E-93 677.4 47.0 551 74-652 101-659 (689)
2 KOG0387 Transcription-coupled 100.0 2.2E-79 4.8E-84 646.1 34.7 455 165-624 197-685 (923)
3 KOG0385 Chromatin remodeling c 100.0 4.1E-79 8.8E-84 640.5 33.3 441 166-621 159-623 (971)
4 PLN03142 Probable chromatin-re 100.0 3.6E-74 7.8E-79 654.6 39.8 442 164-621 160-623 (1033)
5 KOG0389 SNF2 family DNA-depend 100.0 1.3E-73 2.8E-78 601.5 34.8 441 172-623 398-914 (941)
6 KOG0392 SNF2 family DNA-depend 100.0 3.9E-73 8.5E-78 618.8 38.0 459 165-646 967-1495(1549)
7 KOG0384 Chromodomain-helicase 100.0 1.2E-70 2.6E-75 602.6 31.7 441 163-620 359-834 (1373)
8 KOG0391 SNF2 family DNA-depend 100.0 1.1E-70 2.5E-75 592.5 30.6 446 165-622 607-1412(1958)
9 KOG0388 SNF2 family DNA-depend 100.0 1.3E-69 2.9E-74 561.5 29.7 451 163-621 557-1178(1185)
10 KOG0390 DNA repair protein, SN 100.0 1.5E-65 3.2E-70 557.7 40.3 450 167-623 232-733 (776)
11 KOG1002 Nucleotide excision re 100.0 1.6E-63 3.5E-68 499.0 31.8 446 164-625 175-777 (791)
12 KOG4439 RNA polymerase II tran 100.0 1.2E-62 2.7E-67 511.7 30.2 437 165-622 317-883 (901)
13 KOG1015 Transcription regulato 100.0 7.7E-61 1.7E-65 508.8 32.6 449 164-622 659-1302(1567)
14 KOG0386 Chromatin remodeling c 100.0 4.7E-62 1E-66 525.5 23.0 444 164-621 384-862 (1157)
15 PRK04914 ATP-dependent helicas 100.0 6.3E-59 1.4E-63 528.7 35.9 457 170-652 149-663 (956)
16 COG0553 HepA Superfamily II DN 100.0 6.6E-52 1.4E-56 491.8 35.3 444 168-620 333-845 (866)
17 KOG1016 Predicted DNA helicase 100.0 2.1E-51 4.6E-56 429.1 22.3 460 166-636 247-888 (1387)
18 TIGR00603 rad25 DNA repair hel 100.0 3.7E-43 8.1E-48 386.7 39.2 347 171-609 253-619 (732)
19 KOG1001 Helicase-like transcri 100.0 3.9E-44 8.5E-49 393.6 21.2 410 190-620 153-673 (674)
20 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-36 1E-40 329.6 34.4 399 104-598 44-456 (501)
21 COG1111 MPH1 ERCC4-like helica 100.0 5.1E-35 1.1E-39 298.5 34.6 394 172-621 14-505 (542)
22 PRK13766 Hef nuclease; Provisi 100.0 4.5E-35 9.8E-40 340.8 37.7 419 172-614 14-496 (773)
23 COG1061 SSL2 DNA or RNA helica 100.0 8.5E-35 1.8E-39 313.2 34.2 365 168-609 31-406 (442)
24 PF00176 SNF2_N: SNF2 family N 100.0 2.8E-34 6E-39 297.8 17.7 240 177-432 1-263 (299)
25 KOG0383 Predicted helicase [Ge 100.0 1.5E-35 3.3E-40 320.7 6.2 372 164-551 283-696 (696)
26 KOG1123 RNA polymerase II tran 100.0 6.1E-31 1.3E-35 265.5 25.8 340 172-603 301-659 (776)
27 PTZ00110 helicase; Provisional 100.0 2E-28 4.4E-33 271.0 27.7 321 172-597 151-484 (545)
28 KOG0298 DEAD box-containing he 100.0 1E-28 2.2E-33 274.3 21.9 140 471-616 1204-1345(1394)
29 PRK01297 ATP-dependent RNA hel 100.0 2E-27 4.3E-32 261.1 32.1 316 173-596 109-441 (475)
30 PRK11776 ATP-dependent RNA hel 100.0 7.7E-28 1.7E-32 263.6 28.3 315 173-597 26-349 (460)
31 PRK11192 ATP-dependent RNA hel 100.0 2.1E-27 4.6E-32 258.5 28.1 314 172-590 22-347 (434)
32 PRK10590 ATP-dependent RNA hel 100.0 2.5E-27 5.3E-32 258.5 26.5 327 172-609 22-362 (456)
33 PRK04837 ATP-dependent RNA hel 100.0 7.9E-27 1.7E-31 252.8 26.9 315 173-596 30-361 (423)
34 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-26 3E-31 255.7 28.9 331 172-612 142-488 (518)
35 TIGR00614 recQ_fam ATP-depende 100.0 5.8E-27 1.3E-31 256.4 25.4 309 172-591 10-329 (470)
36 PRK04537 ATP-dependent RNA hel 100.0 1.6E-26 3.4E-31 256.8 28.2 316 172-596 30-363 (572)
37 PRK11634 ATP-dependent RNA hel 99.9 9.7E-26 2.1E-30 251.8 32.1 311 172-589 27-346 (629)
38 PTZ00424 helicase 45; Provisio 99.9 4.5E-26 9.9E-31 246.1 27.3 317 173-597 50-374 (401)
39 KOG0354 DEAD-box like helicase 99.9 1.8E-25 4E-30 242.0 31.0 422 172-620 61-551 (746)
40 PRK11057 ATP-dependent DNA hel 99.9 3.2E-26 6.9E-31 257.0 24.6 305 173-589 25-337 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 2.3E-25 4.9E-30 251.0 26.7 306 172-590 12-326 (591)
42 PLN03137 ATP-dependent DNA hel 99.9 1.5E-24 3.3E-29 245.4 29.6 311 173-592 460-784 (1195)
43 TIGR00643 recG ATP-dependent D 99.9 2.1E-24 4.6E-29 243.4 28.7 306 171-589 233-560 (630)
44 KOG0331 ATP-dependent RNA heli 99.9 1.2E-24 2.5E-29 229.1 23.5 335 173-610 113-463 (519)
45 PRK11448 hsdR type I restricti 99.9 4.1E-24 8.9E-29 249.9 30.4 354 172-594 412-815 (1123)
46 TIGR00580 mfd transcription-re 99.9 2E-24 4.3E-29 248.2 27.3 362 171-650 449-838 (926)
47 KOG0330 ATP-dependent RNA heli 99.9 1E-24 2.2E-29 215.1 19.2 325 172-607 82-415 (476)
48 PRK10917 ATP-dependent DNA hel 99.9 3.7E-24 8.1E-29 242.9 26.6 306 170-589 258-583 (681)
49 TIGR03817 DECH_helic helicase/ 99.9 2.5E-23 5.4E-28 237.1 28.5 333 173-605 36-394 (742)
50 PRK10689 transcription-repair 99.9 2.8E-23 6.2E-28 243.7 29.6 362 171-650 598-987 (1147)
51 PRK13767 ATP-dependent helicas 99.9 4.9E-23 1.1E-27 239.4 30.2 327 173-592 32-395 (876)
52 PRK02362 ski2-like helicase; P 99.9 1.8E-22 4E-27 232.4 32.5 317 172-595 22-395 (737)
53 COG0513 SrmB Superfamily II DN 99.9 2.3E-22 5E-27 220.7 27.7 332 173-611 51-393 (513)
54 KOG0343 RNA Helicase [RNA proc 99.9 3E-22 6.5E-27 205.4 19.8 326 173-611 91-435 (758)
55 TIGR01587 cas3_core CRISPR-ass 99.9 9E-22 2E-26 209.1 24.4 316 192-607 2-351 (358)
56 PRK00254 ski2-like helicase; P 99.9 2.4E-21 5.1E-26 222.7 29.6 316 172-597 22-388 (720)
57 PRK01172 ski2-like helicase; P 99.9 7.8E-21 1.7E-25 217.5 31.9 305 173-587 22-368 (674)
58 KOG0328 Predicted ATP-dependen 99.9 4.5E-22 9.7E-27 188.4 16.7 312 177-598 53-374 (400)
59 COG1200 RecG RecG-like helicas 99.9 4.8E-21 1E-25 204.9 20.1 306 170-587 259-583 (677)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.6E-20 1E-24 206.4 27.4 105 484-593 270-390 (844)
61 KOG0333 U5 snRNP-like RNA heli 99.9 2.5E-20 5.3E-25 190.6 21.6 310 173-590 267-619 (673)
62 TIGR03714 secA2 accessory Sec 99.9 4.4E-20 9.6E-25 204.5 25.3 116 468-588 406-530 (762)
63 TIGR00348 hsdR type I site-spe 99.9 1.4E-19 3.1E-24 204.6 27.8 360 171-595 236-649 (667)
64 KOG0335 ATP-dependent RNA heli 99.8 4.8E-20 1E-24 191.0 19.8 316 171-593 94-442 (482)
65 KOG0342 ATP-dependent RNA heli 99.8 2.3E-20 4.9E-25 190.1 16.2 310 173-586 104-428 (543)
66 COG0514 RecQ Superfamily II DN 99.8 1.4E-19 3.1E-24 194.4 21.9 307 173-590 17-332 (590)
67 PRK09200 preprotein translocas 99.8 2.6E-19 5.7E-24 200.3 24.7 131 468-607 410-548 (790)
68 COG4889 Predicted helicase [Ge 99.8 1.2E-19 2.7E-24 194.4 20.5 389 165-594 153-585 (1518)
69 KOG0345 ATP-dependent RNA heli 99.8 1.3E-19 2.9E-24 183.2 19.7 312 173-591 28-360 (567)
70 PHA02653 RNA helicase NPH-II; 99.8 5.5E-19 1.2E-23 196.8 26.0 108 485-599 394-516 (675)
71 KOG0348 ATP-dependent RNA heli 99.8 2E-19 4.4E-24 184.3 19.5 356 173-612 159-567 (708)
72 COG4096 HsdR Type I site-speci 99.8 1.9E-19 4.1E-24 194.9 20.3 339 170-594 162-545 (875)
73 KOG0339 ATP-dependent RNA heli 99.8 1.6E-19 3.4E-24 183.7 17.7 320 173-600 245-578 (731)
74 TIGR03158 cas3_cyano CRISPR-as 99.8 1.2E-18 2.7E-23 183.4 25.0 318 177-580 1-357 (357)
75 COG1201 Lhr Lhr-like helicases 99.8 4.3E-18 9.3E-23 189.7 30.0 326 172-605 21-368 (814)
76 TIGR00963 secA preprotein tran 99.8 3.1E-18 6.7E-23 188.7 27.7 118 468-589 387-511 (745)
77 PRK09401 reverse gyrase; Revie 99.8 9.4E-19 2E-23 206.3 24.9 301 171-582 78-431 (1176)
78 KOG0338 ATP-dependent RNA heli 99.8 5.2E-19 1.1E-23 180.2 19.1 322 173-605 203-539 (691)
79 KOG0350 DEAD-box ATP-dependent 99.8 2.9E-19 6.3E-24 181.9 15.4 362 172-610 158-551 (620)
80 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.2E-17 4.8E-22 188.4 31.2 303 179-597 7-336 (819)
81 KOG0340 ATP-dependent RNA heli 99.8 4.3E-18 9.4E-23 166.7 21.6 307 173-587 29-353 (442)
82 PRK12898 secA preprotein trans 99.8 5.4E-18 1.2E-22 185.9 25.0 133 467-608 454-594 (656)
83 PRK09751 putative ATP-dependen 99.8 5.1E-18 1.1E-22 200.8 26.1 97 484-582 242-371 (1490)
84 COG1197 Mfd Transcription-repa 99.8 1.2E-17 2.6E-22 188.6 27.4 367 169-651 590-982 (1139)
85 COG1202 Superfamily II helicas 99.8 3.9E-18 8.5E-23 176.3 21.0 317 172-597 215-553 (830)
86 PRK05580 primosome assembly pr 99.8 2.1E-17 4.6E-22 187.2 27.6 321 171-595 142-549 (679)
87 KOG0336 ATP-dependent RNA heli 99.8 1.9E-18 4.1E-23 171.6 16.1 307 173-587 242-564 (629)
88 PRK11664 ATP-dependent RNA hel 99.8 7.9E-17 1.7E-21 184.4 30.5 304 179-598 10-340 (812)
89 COG1205 Distinct helicase fami 99.8 1.8E-17 3.9E-22 189.8 24.9 336 173-608 70-433 (851)
90 PRK09694 helicase Cas3; Provis 99.8 4.9E-17 1.1E-21 185.6 27.1 337 172-585 285-665 (878)
91 KOG0341 DEAD-box protein abstr 99.8 4.8E-19 1.1E-23 174.6 8.7 322 173-604 192-535 (610)
92 COG4098 comFA Superfamily II D 99.8 1.3E-15 2.9E-20 148.9 31.7 303 171-594 95-413 (441)
93 KOG0326 ATP-dependent RNA heli 99.8 1.5E-18 3.2E-23 167.3 10.7 310 173-595 107-427 (459)
94 COG1204 Superfamily II helicas 99.8 9.6E-17 2.1E-21 181.4 26.8 311 173-587 31-398 (766)
95 TIGR00595 priA primosomal prot 99.8 5.3E-17 1.1E-21 177.5 23.9 297 193-597 1-383 (505)
96 PRK14701 reverse gyrase; Provi 99.7 1.2E-16 2.6E-21 192.6 24.8 302 173-585 79-446 (1638)
97 KOG4284 DEAD box protein [Tran 99.7 3E-17 6.6E-22 171.5 16.2 311 174-586 48-370 (980)
98 TIGR01054 rgy reverse gyrase. 99.7 1.4E-16 3E-21 188.5 23.6 286 172-567 77-409 (1171)
99 PF04851 ResIII: Type III rest 99.7 2.6E-17 5.6E-22 157.4 13.9 156 172-338 2-183 (184)
100 KOG0332 ATP-dependent RNA heli 99.7 3.6E-16 7.9E-21 154.2 21.9 302 177-586 116-434 (477)
101 cd00079 HELICc Helicase superf 99.7 1.8E-17 3.9E-22 149.1 10.4 121 469-591 11-131 (131)
102 PRK13104 secA preprotein trans 99.7 1.8E-15 4E-20 169.2 26.0 131 468-607 426-594 (896)
103 KOG0334 RNA helicase [RNA proc 99.7 3.3E-16 7.1E-21 173.9 19.1 305 172-596 386-719 (997)
104 KOG0344 ATP-dependent RNA heli 99.7 7.2E-16 1.6E-20 161.2 19.3 310 173-588 158-488 (593)
105 KOG0346 RNA helicase [RNA proc 99.7 4.3E-16 9.3E-21 156.6 15.6 314 177-596 45-409 (569)
106 PRK12904 preprotein translocas 99.7 8.7E-15 1.9E-19 163.8 26.2 131 468-607 412-580 (830)
107 KOG0347 RNA helicase [RNA proc 99.7 3.2E-16 6.9E-21 161.5 12.7 359 174-618 204-612 (731)
108 KOG0327 Translation initiation 99.7 1E-15 2.2E-20 152.5 15.8 311 178-597 53-370 (397)
109 PRK12906 secA preprotein trans 99.7 3.2E-15 7E-20 166.5 21.4 117 468-588 422-546 (796)
110 TIGR01967 DEAH_box_HrpA ATP-de 99.7 2.5E-14 5.3E-19 167.5 27.1 306 179-599 72-406 (1283)
111 PRK13107 preprotein translocas 99.7 6.5E-15 1.4E-19 164.4 21.1 132 467-607 430-598 (908)
112 PRK11131 ATP-dependent RNA hel 99.6 2.8E-14 6E-19 166.5 25.4 108 485-599 285-413 (1294)
113 KOG0351 ATP-dependent DNA heli 99.6 4.1E-15 9E-20 169.4 14.8 317 172-595 263-592 (941)
114 PF00271 Helicase_C: Helicase 99.6 6.3E-16 1.4E-20 125.5 5.9 78 504-583 1-78 (78)
115 TIGR00631 uvrb excinuclease AB 99.6 2.6E-12 5.5E-17 144.2 35.2 132 470-606 426-564 (655)
116 COG1203 CRISPR-associated heli 99.6 1.3E-13 2.9E-18 157.9 22.5 136 476-614 430-569 (733)
117 smart00487 DEXDc DEAD-like hel 99.6 2.9E-14 6.2E-19 137.7 12.7 157 172-338 7-171 (201)
118 COG0556 UvrB Helicase subunit 99.6 1.1E-11 2.4E-16 128.4 32.0 138 470-610 430-572 (663)
119 KOG0352 ATP-dependent DNA heli 99.5 1.4E-13 2.9E-18 138.2 16.8 323 176-593 23-360 (641)
120 KOG0952 DNA/RNA helicase MER3/ 99.5 1.9E-12 4E-17 143.3 22.4 309 177-587 114-481 (1230)
121 PRK12900 secA preprotein trans 99.5 5.3E-12 1.1E-16 141.9 26.3 130 470-608 582-719 (1025)
122 PRK05298 excinuclease ABC subu 99.5 5.6E-11 1.2E-15 134.5 34.9 122 470-596 430-556 (652)
123 cd00046 DEXDc DEAD-like helica 99.5 1.5E-13 3.3E-18 124.7 11.3 136 191-337 2-144 (144)
124 smart00490 HELICc helicase sup 99.5 7.1E-14 1.5E-18 114.3 8.2 81 501-583 2-82 (82)
125 PRK12326 preprotein translocas 99.5 9.4E-12 2E-16 136.2 23.6 177 468-663 409-600 (764)
126 cd00268 DEADc DEAD-box helicas 99.4 7.4E-13 1.6E-17 128.9 12.0 155 173-338 21-185 (203)
127 PF00270 DEAD: DEAD/DEAH box h 99.4 4.5E-13 9.8E-18 126.2 10.0 152 176-338 2-163 (169)
128 KOG0353 ATP-dependent DNA heli 99.4 4.9E-12 1.1E-16 125.0 17.5 317 173-595 94-467 (695)
129 PRK12899 secA preprotein trans 99.4 6.2E-11 1.3E-15 133.1 24.2 117 470-590 552-676 (970)
130 KOG0337 ATP-dependent RNA heli 99.4 2E-12 4.4E-17 129.9 10.2 311 173-596 43-367 (529)
131 PRK13103 secA preprotein trans 99.3 1E-10 2.2E-15 131.3 22.5 132 467-607 430-598 (913)
132 PRK12903 secA preprotein trans 99.3 4.9E-10 1.1E-14 124.6 24.2 132 468-608 408-547 (925)
133 KOG0947 Cytoplasmic exosomal R 99.3 1.3E-10 2.7E-15 127.7 19.2 143 171-337 295-444 (1248)
134 KOG0950 DNA polymerase theta/e 99.2 4.3E-10 9.4E-15 124.3 19.8 319 173-584 223-598 (1008)
135 KOG0951 RNA helicase BRR2, DEA 99.2 4.2E-10 9.2E-15 126.6 19.9 345 173-584 309-689 (1674)
136 COG4581 Superfamily II RNA hel 99.2 8E-10 1.7E-14 126.0 21.6 150 170-337 116-270 (1041)
137 COG1198 PriA Primosomal protei 99.2 1.2E-09 2.6E-14 122.0 22.4 322 172-598 197-606 (730)
138 KOG1513 Nuclear helicase MOP-3 99.2 1.6E-09 3.4E-14 116.7 22.0 92 529-622 850-949 (1300)
139 KOG0948 Nuclear exosomal RNA h 99.2 1.6E-10 3.4E-15 123.9 14.4 143 171-337 127-276 (1041)
140 COG1643 HrpA HrpA-like helicas 99.2 3.2E-09 7E-14 120.3 25.0 110 485-600 258-390 (845)
141 TIGR01407 dinG_rel DnaQ family 99.2 3.7E-09 8.1E-14 124.0 26.6 89 474-567 661-756 (850)
142 PF13872 AAA_34: P-loop contai 99.1 4.8E-09 1E-13 104.2 18.3 235 165-427 27-301 (303)
143 CHL00122 secA preprotein trans 99.1 3.9E-09 8.4E-14 118.3 19.6 84 468-554 406-490 (870)
144 COG1110 Reverse gyrase [DNA re 99.1 9.7E-09 2.1E-13 114.5 21.2 322 173-566 82-416 (1187)
145 KOG0329 ATP-dependent RNA heli 99.0 2.8E-09 6.1E-14 100.6 11.6 292 177-612 68-369 (387)
146 PRK12902 secA preprotein trans 99.0 2.8E-08 6E-13 111.4 20.3 84 468-554 421-505 (939)
147 PRK07246 bifunctional ATP-depe 99.0 1.1E-07 2.4E-12 110.3 25.4 89 474-567 635-725 (820)
148 PF07652 Flavi_DEAD: Flaviviru 99.0 5.1E-09 1.1E-13 92.3 10.8 126 191-337 6-136 (148)
149 PRK12901 secA preprotein trans 99.0 7.2E-08 1.6E-12 109.2 22.3 129 470-607 612-748 (1112)
150 KOG0922 DEAH-box RNA helicase 98.9 2.2E-07 4.7E-12 100.0 24.3 114 484-600 256-393 (674)
151 KOG0953 Mitochondrial RNA heli 98.9 5E-08 1.1E-12 102.1 18.9 164 484-653 356-531 (700)
152 TIGR00596 rad1 DNA repair prot 98.9 2.2E-07 4.7E-12 106.2 22.5 58 558-620 478-538 (814)
153 PF02399 Herpes_ori_bp: Origin 98.9 1.5E-07 3.3E-12 104.5 20.4 315 192-593 52-386 (824)
154 KOG0949 Predicted helicase, DE 98.9 6.1E-07 1.3E-11 99.6 24.1 180 174-369 512-703 (1330)
155 COG0610 Type I site-specific r 98.8 2.1E-07 4.5E-12 109.4 20.6 136 189-341 273-417 (962)
156 PF13871 Helicase_C_4: Helicas 98.7 5.3E-08 1.1E-12 96.6 10.0 97 527-625 52-156 (278)
157 TIGR02562 cas3_yersinia CRISPR 98.6 3.6E-05 7.8E-10 88.3 29.9 166 174-339 409-636 (1110)
158 KOG0349 Putative DEAD-box RNA 98.6 1.5E-07 3.4E-12 95.3 8.7 97 484-582 503-602 (725)
159 KOG0923 mRNA splicing factor A 98.5 4.8E-06 1E-10 89.1 17.7 104 486-595 473-604 (902)
160 KOG0924 mRNA splicing factor A 98.5 7.3E-06 1.6E-10 88.0 18.7 112 487-604 564-704 (1042)
161 COG0653 SecA Preprotein transl 98.5 7.2E-06 1.6E-10 92.0 18.8 131 468-607 411-552 (822)
162 KOG0920 ATP-dependent RNA heli 98.4 1.5E-05 3.3E-10 90.7 20.9 122 472-598 397-545 (924)
163 KOG0926 DEAH-box RNA helicase 98.4 5.4E-06 1.2E-10 90.5 14.3 78 514-596 608-703 (1172)
164 KOG0925 mRNA splicing factor A 98.2 4.1E-05 8.9E-10 79.4 16.5 110 485-600 252-390 (699)
165 KOG4150 Predicted ATP-dependen 98.2 1.5E-05 3.3E-10 83.8 13.3 131 469-603 508-646 (1034)
166 PRK15483 type III restriction- 98.2 1.4E-05 3.1E-10 91.7 13.6 71 538-609 501-579 (986)
167 PRK14873 primosome assembly pr 98.2 2.5E-05 5.5E-10 88.1 15.2 128 198-338 169-304 (665)
168 PF07443 HARP: HepA-related pr 98.1 4.1E-06 8.9E-11 60.5 3.7 48 86-133 1-48 (55)
169 PF13086 AAA_11: AAA domain; P 97.9 1.5E-05 3.3E-10 79.0 6.7 65 173-237 1-75 (236)
170 PF13401 AAA_22: AAA domain; P 97.8 6.6E-05 1.4E-09 67.1 7.7 114 189-337 4-125 (131)
171 TIGR03117 cas_csf4 CRISPR-asso 97.8 0.00022 4.7E-09 79.7 13.1 96 474-572 457-566 (636)
172 PF13604 AAA_30: AAA domain; P 97.8 0.00013 2.8E-09 70.2 10.0 130 173-339 1-132 (196)
173 PF09848 DUF2075: Uncharacteri 97.5 0.0003 6.5E-09 74.4 8.3 46 192-237 4-53 (352)
174 KOG0738 AAA+-type ATPase [Post 97.5 0.0017 3.6E-08 66.4 13.0 58 166-238 234-292 (491)
175 PF13307 Helicase_C_2: Helicas 97.4 0.00055 1.2E-08 64.1 7.6 79 485-567 8-92 (167)
176 PRK04296 thymidine kinase; Pro 97.4 0.00067 1.5E-08 64.9 8.3 33 192-224 5-38 (190)
177 PF11496 HDA2-3: Class II hist 97.3 0.0098 2.1E-07 60.7 16.3 140 467-608 93-256 (297)
178 KOG1803 DNA helicase [Replicat 97.2 0.00052 1.1E-08 73.8 6.0 66 170-235 182-249 (649)
179 PF02562 PhoH: PhoH-like prote 97.1 0.00066 1.4E-08 65.0 4.7 52 174-226 5-59 (205)
180 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.0027 5.9E-08 63.4 8.7 120 172-309 76-209 (266)
181 smart00382 AAA ATPases associa 97.0 0.0046 9.9E-08 55.2 9.6 43 189-231 2-45 (148)
182 PRK08074 bifunctional ATP-depe 96.9 0.0078 1.7E-07 71.8 12.6 97 472-570 737-839 (928)
183 PRK08074 bifunctional ATP-depe 96.9 0.0059 1.3E-07 72.8 11.5 69 173-241 257-335 (928)
184 PRK10536 hypothetical protein; 96.9 0.0099 2.1E-07 58.7 10.9 38 174-212 60-97 (262)
185 KOG1802 RNA helicase nonsense 96.8 0.0036 7.9E-08 67.8 7.7 65 173-238 410-477 (935)
186 KOG0951 RNA helicase BRR2, DEA 96.8 0.02 4.3E-07 66.7 13.7 108 185-311 1155-1267(1674)
187 TIGR01448 recD_rel helicase, p 96.7 0.0086 1.9E-07 69.2 11.1 59 171-230 321-382 (720)
188 PRK12723 flagellar biosynthesi 96.7 0.023 4.9E-07 60.3 13.4 127 190-352 175-312 (388)
189 cd00009 AAA The AAA+ (ATPases 96.7 0.026 5.7E-07 50.6 12.2 51 178-228 6-59 (151)
190 PF12340 DUF3638: Protein of u 96.6 0.0038 8.3E-08 60.4 6.0 69 172-240 22-94 (229)
191 COG3587 Restriction endonuclea 96.6 0.0061 1.3E-07 68.2 8.0 46 538-583 483-528 (985)
192 PF05621 TniB: Bacterial TniB 96.6 0.017 3.7E-07 58.2 10.5 115 190-337 62-189 (302)
193 PRK11747 dinG ATP-dependent DN 96.5 0.023 5E-07 65.5 12.8 91 472-568 520-617 (697)
194 PRK11747 dinG ATP-dependent DN 96.5 0.013 2.8E-07 67.6 10.5 63 172-234 24-98 (697)
195 COG1199 DinG Rad3-related DNA 96.5 0.022 4.8E-07 65.7 12.2 115 472-590 464-612 (654)
196 TIGR01447 recD exodeoxyribonuc 96.4 0.013 2.9E-07 65.7 9.9 60 176-236 148-214 (586)
197 PRK11773 uvrD DNA-dependent he 96.4 0.57 1.2E-05 54.6 23.6 67 172-241 8-80 (721)
198 TIGR03015 pepcterm_ATPase puta 96.4 0.069 1.5E-06 54.1 14.1 40 175-214 25-68 (269)
199 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.013 2.9E-07 57.7 8.5 27 188-214 37-63 (226)
200 TIGR02768 TraA_Ti Ti-type conj 96.3 0.028 6.2E-07 65.2 11.6 57 172-228 351-408 (744)
201 PF13245 AAA_19: Part of AAA d 96.2 0.0098 2.1E-07 47.4 5.4 55 181-235 2-62 (76)
202 TIGR01075 uvrD DNA helicase II 96.2 0.63 1.4E-05 54.3 22.5 66 173-241 4-75 (715)
203 TIGR00604 rad3 DNA repair heli 96.1 0.05 1.1E-06 63.2 12.7 93 472-567 507-615 (705)
204 PRK06526 transposase; Provisio 96.1 0.017 3.7E-07 57.8 7.6 58 174-236 81-142 (254)
205 smart00492 HELICc3 helicase su 96.1 0.038 8.2E-07 49.9 9.0 53 513-567 25-79 (141)
206 PRK10875 recD exonuclease V su 96.0 0.03 6.5E-07 63.1 9.9 51 175-226 154-209 (615)
207 PF00448 SRP54: SRP54-type pro 96.0 0.078 1.7E-06 50.9 11.2 132 192-350 4-138 (196)
208 smart00488 DEXDc2 DEAD-like he 96.0 0.021 4.6E-07 58.4 7.8 67 172-238 7-84 (289)
209 smart00489 DEXDc3 DEAD-like he 96.0 0.021 4.6E-07 58.4 7.8 67 172-238 7-84 (289)
210 PRK10919 ATP-dependent DNA hel 96.0 1.6 3.4E-05 50.5 23.7 65 173-240 2-72 (672)
211 PRK05707 DNA polymerase III su 95.9 0.068 1.5E-06 55.7 11.3 42 173-214 3-47 (328)
212 PRK05703 flhF flagellar biosyn 95.9 0.084 1.8E-06 57.0 12.4 131 189-353 221-358 (424)
213 PRK09112 DNA polymerase III su 95.8 0.13 2.8E-06 54.1 13.0 32 184-215 37-71 (351)
214 PF00004 AAA: ATPase family as 95.8 0.048 1E-06 48.3 8.7 35 192-228 1-35 (132)
215 TIGR01073 pcrA ATP-dependent D 95.7 1.8 3.9E-05 50.6 23.1 65 173-240 4-74 (726)
216 PRK08084 DNA replication initi 95.6 0.046 1E-06 54.2 8.4 24 190-213 46-69 (235)
217 KOG1805 DNA replication helica 95.6 0.05 1.1E-06 62.0 9.3 66 172-238 668-736 (1100)
218 PRK08727 hypothetical protein; 95.5 0.096 2.1E-06 51.8 10.0 24 191-214 43-66 (233)
219 PRK13889 conjugal transfer rel 95.5 0.075 1.6E-06 62.9 10.5 124 173-339 346-472 (988)
220 COG1419 FlhF Flagellar GTP-bin 95.4 0.31 6.8E-06 51.2 13.7 134 189-355 203-341 (407)
221 smart00491 HELICc2 helicase su 95.4 0.074 1.6E-06 48.1 8.1 68 499-567 4-80 (142)
222 PRK11889 flhF flagellar biosyn 95.3 0.43 9.4E-06 50.3 14.4 121 190-346 242-371 (436)
223 cd01121 Sms Sms (bacterial rad 95.3 0.14 3.1E-06 54.1 11.1 126 179-337 68-209 (372)
224 TIGR02881 spore_V_K stage V sp 95.3 0.082 1.8E-06 53.4 8.9 24 190-213 43-66 (261)
225 PRK14974 cell division protein 95.2 0.22 4.7E-06 51.9 12.0 118 190-338 141-265 (336)
226 TIGR00376 DNA helicase, putati 95.2 0.041 8.8E-07 62.7 7.3 66 172-237 156-223 (637)
227 PRK07952 DNA replication prote 95.2 0.27 5.9E-06 48.8 12.2 58 176-237 79-144 (244)
228 PRK08769 DNA polymerase III su 95.2 0.18 4E-06 52.1 11.3 43 172-214 3-51 (319)
229 CHL00181 cbbX CbbX; Provisiona 95.2 0.075 1.6E-06 54.3 8.3 23 191-213 61-83 (287)
230 PRK12402 replication factor C 95.0 0.2 4.4E-06 52.5 11.5 40 175-214 20-61 (337)
231 COG1484 DnaC DNA replication p 95.0 0.087 1.9E-06 52.8 8.2 48 188-235 104-152 (254)
232 PRK06893 DNA replication initi 95.0 0.09 2E-06 51.9 8.1 23 191-213 41-63 (229)
233 TIGR02880 cbbX_cfxQ probable R 95.0 0.086 1.9E-06 53.8 8.1 25 190-214 59-83 (284)
234 PRK14956 DNA polymerase III su 94.9 0.21 4.6E-06 54.1 11.1 38 178-215 26-66 (484)
235 PRK13826 Dtr system oriT relax 94.9 0.14 3.1E-06 61.0 10.5 126 172-340 380-508 (1102)
236 PRK07003 DNA polymerase III su 94.8 0.75 1.6E-05 52.4 15.5 36 179-214 25-63 (830)
237 cd01124 KaiC KaiC is a circadi 94.8 0.18 4E-06 47.7 9.5 47 192-238 2-49 (187)
238 KOG0740 AAA+-type ATPase [Post 94.8 0.095 2.1E-06 55.6 7.9 46 191-238 188-233 (428)
239 PF13173 AAA_14: AAA domain 94.7 0.25 5.4E-06 43.8 9.6 25 190-214 3-27 (128)
240 COG1435 Tdk Thymidine kinase [ 94.7 0.1 2.2E-06 49.0 6.9 109 193-336 8-118 (201)
241 KOG0989 Replication factor C, 94.5 0.11 2.4E-06 52.0 7.2 38 177-214 40-82 (346)
242 cd01120 RecA-like_NTPases RecA 94.5 0.72 1.6E-05 42.2 12.5 34 192-225 2-36 (165)
243 PRK05642 DNA replication initi 94.5 0.16 3.5E-06 50.3 8.4 24 190-213 46-69 (234)
244 PF06862 DUF1253: Protein of u 94.4 0.63 1.4E-05 50.0 13.2 127 469-596 280-414 (442)
245 PRK04195 replication factor C 94.4 0.37 8E-06 53.3 12.0 35 189-225 39-73 (482)
246 COG0553 HepA Superfamily II DN 94.4 0.032 6.9E-07 66.8 4.0 179 172-359 83-289 (866)
247 PRK08181 transposase; Validate 94.4 0.28 6E-06 49.5 10.0 51 173-223 87-141 (269)
248 PRK08116 hypothetical protein; 94.4 0.32 7E-06 49.2 10.6 41 189-229 114-155 (268)
249 PRK06964 DNA polymerase III su 94.4 0.42 9.2E-06 49.9 11.6 41 174-214 2-46 (342)
250 PHA02533 17 large terminase pr 94.4 0.71 1.5E-05 51.4 13.9 145 172-337 58-209 (534)
251 PTZ00293 thymidine kinase; Pro 94.3 0.23 5.1E-06 47.7 8.7 33 193-225 8-41 (211)
252 PRK00771 signal recognition pa 94.2 0.35 7.7E-06 52.2 10.8 36 190-225 96-132 (437)
253 COG0464 SpoVK ATPases of the A 94.1 0.28 6.2E-06 54.5 10.5 65 173-239 249-324 (494)
254 COG3267 ExeA Type II secretory 94.1 0.39 8.5E-06 47.0 9.9 44 184-227 45-89 (269)
255 PLN03025 replication factor C 94.1 0.51 1.1E-05 49.1 11.6 37 178-214 21-59 (319)
256 PRK06921 hypothetical protein; 94.0 0.31 6.7E-06 49.2 9.5 35 189-223 117-153 (266)
257 TIGR00604 rad3 DNA repair heli 94.0 0.095 2.1E-06 60.9 6.6 66 173-238 10-83 (705)
258 PRK14960 DNA polymerase III su 94.0 0.47 1E-05 53.3 11.4 38 177-214 22-62 (702)
259 PRK06871 DNA polymerase III su 93.9 0.54 1.2E-05 48.8 11.2 41 174-214 3-49 (325)
260 PRK07940 DNA polymerase III su 93.9 0.51 1.1E-05 50.4 11.3 24 191-214 38-61 (394)
261 COG1875 NYN ribonuclease and A 93.9 0.13 2.9E-06 52.6 6.4 37 176-212 231-268 (436)
262 PRK08903 DnaA regulatory inact 93.8 0.49 1.1E-05 46.6 10.4 35 189-223 42-77 (227)
263 PF13177 DNA_pol3_delta2: DNA 93.7 1.1 2.4E-05 41.5 11.9 24 191-214 21-44 (162)
264 COG1066 Sms Predicted ATP-depe 93.7 0.84 1.8E-05 47.8 11.8 126 179-337 79-219 (456)
265 COG2256 MGS1 ATPase related to 93.6 0.69 1.5E-05 48.3 11.1 33 182-214 39-73 (436)
266 KOG0991 Replication factor C, 93.6 0.22 4.7E-06 47.9 6.9 24 191-214 50-73 (333)
267 KOG0737 AAA+-type ATPase [Post 93.6 0.3 6.5E-06 50.3 8.3 52 186-239 124-175 (386)
268 PHA02544 44 clamp loader, smal 93.6 0.98 2.1E-05 46.9 12.7 50 174-225 25-77 (316)
269 TIGR03346 chaperone_ClpB ATP-d 93.6 0.31 6.7E-06 57.8 9.8 26 189-214 194-219 (852)
270 PRK14722 flhF flagellar biosyn 93.5 0.48 1E-05 50.0 10.1 42 186-227 134-178 (374)
271 COG3421 Uncharacterized protei 93.5 0.19 4.2E-06 54.5 7.2 42 513-554 304-346 (812)
272 PRK06835 DNA replication prote 93.5 0.55 1.2E-05 48.9 10.5 52 174-225 161-219 (329)
273 CHL00195 ycf46 Ycf46; Provisio 93.3 0.28 6E-06 53.9 8.2 36 189-226 259-294 (489)
274 CHL00095 clpC Clp protease ATP 93.3 0.33 7.2E-06 57.4 9.4 26 189-214 200-225 (821)
275 PRK03992 proteasome-activating 93.2 0.32 6.9E-06 52.1 8.5 38 189-228 165-202 (389)
276 PRK07994 DNA polymerase III su 93.2 0.54 1.2E-05 53.2 10.5 38 177-214 23-63 (647)
277 PRK11823 DNA repair protein Ra 93.2 0.7 1.5E-05 50.4 11.1 125 180-337 67-207 (446)
278 TIGR03117 cas_csf4 CRISPR-asso 93.1 0.79 1.7E-05 51.8 11.6 62 178-239 2-70 (636)
279 PTZ00454 26S protease regulato 93.1 0.41 8.9E-06 51.3 9.0 40 189-230 179-218 (398)
280 PRK12377 putative replication 93.1 0.74 1.6E-05 45.8 10.2 41 189-229 101-142 (248)
281 TIGR00362 DnaA chromosomal rep 93.1 0.38 8.2E-06 52.0 8.9 33 191-223 138-173 (405)
282 PRK12323 DNA polymerase III su 93.0 0.93 2E-05 50.9 11.8 38 177-214 23-63 (700)
283 PRK09111 DNA polymerase III su 93.0 0.92 2E-05 51.2 12.0 38 177-214 31-71 (598)
284 TIGR02928 orc1/cdc6 family rep 93.0 1 2.2E-05 47.9 11.9 40 174-213 19-64 (365)
285 PRK12724 flagellar biosynthesi 92.9 1.5 3.1E-05 46.9 12.5 121 192-349 226-356 (432)
286 PRK10865 protein disaggregatio 92.9 0.48 1E-05 56.1 10.0 26 189-214 199-224 (857)
287 PF05970 PIF1: PIF1-like helic 92.9 0.36 7.9E-06 51.3 8.2 69 174-242 2-79 (364)
288 PRK14087 dnaA chromosomal repl 92.9 0.53 1.2E-05 51.4 9.6 42 191-232 143-187 (450)
289 PRK14958 DNA polymerase III su 92.9 0.74 1.6E-05 51.0 10.9 36 179-214 25-63 (509)
290 PRK10917 ATP-dependent DNA hel 92.8 0.73 1.6E-05 53.3 11.2 101 465-566 289-393 (681)
291 PRK14962 DNA polymerase III su 92.8 0.91 2E-05 49.8 11.3 38 177-214 21-61 (472)
292 PRK06731 flhF flagellar biosyn 92.7 1.7 3.7E-05 43.8 12.4 124 189-347 75-206 (270)
293 PF00265 TK: Thymidine kinase; 92.7 0.23 5E-06 46.7 5.7 33 193-225 5-38 (176)
294 PRK07471 DNA polymerase III su 92.6 1.3 2.7E-05 47.0 11.7 24 191-214 43-66 (365)
295 PRK00149 dnaA chromosomal repl 92.5 0.56 1.2E-05 51.5 9.4 39 191-229 150-191 (450)
296 PTZ00112 origin recognition co 92.5 0.75 1.6E-05 53.1 10.2 40 174-213 759-805 (1164)
297 PRK08699 DNA polymerase III su 92.4 1.5 3.2E-05 45.7 11.9 41 174-214 2-46 (325)
298 PRK10416 signal recognition pa 92.4 2.4 5.2E-05 44.0 13.2 34 191-224 116-150 (318)
299 PF05496 RuvB_N: Holliday junc 92.4 0.75 1.6E-05 44.6 8.7 24 191-214 52-75 (233)
300 COG2804 PulE Type II secretory 92.3 2.1 4.5E-05 46.4 12.8 47 172-218 240-287 (500)
301 PRK06090 DNA polymerase III su 92.3 1.3 2.9E-05 45.8 11.2 42 173-214 3-50 (319)
302 PRK14712 conjugal transfer nic 92.3 0.59 1.3E-05 57.9 9.9 59 169-227 831-895 (1623)
303 TIGR00416 sms DNA repair prote 92.3 0.93 2E-05 49.5 10.6 125 179-336 80-220 (454)
304 KOG0739 AAA+-type ATPase [Post 92.3 1.3 2.7E-05 44.4 10.2 46 191-238 168-213 (439)
305 TIGR00635 ruvB Holliday juncti 92.3 0.76 1.6E-05 47.5 9.6 24 191-214 32-55 (305)
306 PRK14088 dnaA chromosomal repl 92.3 1.1 2.5E-05 48.8 11.2 34 191-224 132-168 (440)
307 TIGR03345 VI_ClpV1 type VI sec 92.3 0.5 1.1E-05 55.9 9.0 37 178-214 192-233 (852)
308 PHA02244 ATPase-like protein 92.3 0.85 1.9E-05 47.7 9.6 44 178-223 108-151 (383)
309 TIGR00595 priA primosomal prot 92.2 1.1 2.4E-05 49.7 11.3 98 465-565 4-102 (505)
310 PRK07993 DNA polymerase III su 92.2 1 2.2E-05 47.1 10.3 42 173-214 2-49 (334)
311 PRK07764 DNA polymerase III su 92.2 1.5 3.2E-05 51.5 12.7 38 177-214 22-62 (824)
312 TIGR01243 CDC48 AAA family ATP 92.2 0.34 7.3E-06 56.7 7.4 41 189-231 487-527 (733)
313 PRK13342 recombination factor 92.2 1 2.3E-05 48.7 10.8 24 191-214 38-61 (413)
314 PRK13709 conjugal transfer nic 92.1 0.79 1.7E-05 57.6 10.8 58 169-226 963-1026(1747)
315 PRK14086 dnaA chromosomal repl 92.1 0.71 1.5E-05 51.7 9.4 42 191-232 316-360 (617)
316 TIGR02639 ClpA ATP-dependent C 92.1 0.85 1.8E-05 53.3 10.6 25 189-213 203-227 (731)
317 PRK13833 conjugal transfer pro 92.0 0.36 7.8E-06 49.9 6.6 41 173-213 128-168 (323)
318 PRK11034 clpA ATP-dependent Cl 92.0 0.41 8.8E-06 55.6 7.7 25 189-213 207-231 (758)
319 TIGR03689 pup_AAA proteasome A 92.0 0.36 7.8E-06 53.1 6.9 26 189-214 216-241 (512)
320 PRK09183 transposase/IS protei 92.0 0.94 2E-05 45.6 9.5 48 180-228 94-142 (259)
321 CHL00176 ftsH cell division pr 91.9 1.2 2.7E-05 50.6 11.4 33 189-223 216-248 (638)
322 PRK08939 primosomal protein Dn 91.8 1.2 2.6E-05 46.0 10.2 35 189-223 156-191 (306)
323 PRK14952 DNA polymerase III su 91.8 1.6 3.5E-05 49.0 11.9 23 192-214 38-60 (584)
324 PRK14949 DNA polymerase III su 91.7 0.69 1.5E-05 53.8 9.0 23 192-214 41-63 (944)
325 PF05707 Zot: Zonular occluden 91.7 0.28 6.1E-06 47.0 5.1 21 193-213 4-25 (193)
326 PRK14963 DNA polymerase III su 91.7 1.6 3.6E-05 48.2 11.7 22 193-214 40-61 (504)
327 TIGR01242 26Sp45 26S proteasom 91.5 0.45 9.7E-06 50.6 6.9 34 189-224 156-189 (364)
328 PRK14957 DNA polymerase III su 91.4 2.1 4.5E-05 47.7 12.1 38 177-214 23-63 (546)
329 PRK00440 rfc replication facto 91.3 2.6 5.6E-05 43.7 12.4 38 177-214 24-63 (319)
330 PRK10867 signal recognition pa 91.3 1.9 4E-05 46.7 11.3 34 192-225 103-138 (433)
331 cd01130 VirB11-like_ATPase Typ 91.3 0.54 1.2E-05 44.7 6.6 50 173-222 9-58 (186)
332 PF00580 UvrD-helicase: UvrD/R 91.2 0.45 9.7E-06 49.2 6.5 63 174-239 1-69 (315)
333 PRK08691 DNA polymerase III su 91.2 2.8 6.1E-05 47.7 12.9 36 179-214 25-63 (709)
334 PF00308 Bac_DnaA: Bacterial d 91.1 2 4.2E-05 42.1 10.5 22 192-213 37-58 (219)
335 PRK12422 chromosomal replicati 91.1 0.87 1.9E-05 49.6 8.7 33 191-223 143-176 (445)
336 COG0552 FtsY Signal recognitio 91.1 1.5 3.1E-05 45.0 9.5 126 192-344 142-276 (340)
337 KOG0730 AAA+-type ATPase [Post 91.0 1.2 2.7E-05 49.3 9.6 47 189-238 468-515 (693)
338 TIGR00643 recG ATP-dependent D 91.0 1.3 2.9E-05 50.7 10.5 101 465-566 263-367 (630)
339 PRK05580 primosome assembly pr 90.9 1.7 3.8E-05 50.1 11.4 99 465-566 169-268 (679)
340 PRK14951 DNA polymerase III su 90.8 2 4.3E-05 48.6 11.4 23 192-214 41-63 (618)
341 TIGR00959 ffh signal recogniti 90.8 2.4 5.2E-05 45.8 11.6 35 191-225 101-137 (428)
342 TIGR01425 SRP54_euk signal rec 90.8 3.7 7.9E-05 44.2 12.8 35 191-225 102-137 (429)
343 PRK14961 DNA polymerase III su 90.7 2 4.3E-05 45.6 11.0 23 192-214 41-63 (363)
344 PRK12727 flagellar biosynthesi 90.7 3.6 7.8E-05 45.3 12.8 36 188-223 349-387 (559)
345 PF05876 Terminase_GpA: Phage 90.7 0.72 1.6E-05 51.8 7.8 173 166-349 9-191 (557)
346 PRK14948 DNA polymerase III su 90.7 2.4 5.2E-05 48.3 12.0 33 182-214 28-63 (620)
347 TIGR03499 FlhF flagellar biosy 90.6 0.91 2E-05 46.3 7.9 38 189-226 194-234 (282)
348 PRK08533 flagellar accessory p 90.6 4.1 8.8E-05 40.2 12.3 48 188-235 23-71 (230)
349 PRK06067 flagellar accessory p 90.5 3.7 7.9E-05 40.5 12.0 59 180-238 12-75 (234)
350 PTZ00361 26 proteosome regulat 90.3 0.87 1.9E-05 49.3 7.8 38 189-228 217-254 (438)
351 COG1199 DinG Rad3-related DNA 90.2 0.55 1.2E-05 54.3 6.7 65 172-236 14-84 (654)
352 PRK06645 DNA polymerase III su 90.2 2.9 6.3E-05 46.2 11.8 35 180-214 31-68 (507)
353 TIGR00064 ftsY signal recognit 90.2 6.6 0.00014 39.8 13.6 49 191-239 74-123 (272)
354 TIGR02688 conserved hypothetic 90.2 0.69 1.5E-05 49.2 6.6 27 186-212 206-232 (449)
355 cd03115 SRP The signal recogni 90.2 7.5 0.00016 36.2 13.3 32 192-223 3-35 (173)
356 PRK05986 cob(I)alamin adenolsy 90.0 0.76 1.7E-05 43.5 6.1 144 188-349 21-169 (191)
357 cd01129 PulE-GspE PulE/GspE Th 90.0 0.84 1.8E-05 46.0 6.9 44 173-216 63-107 (264)
358 PHA03333 putative ATPase subun 90.0 4.4 9.4E-05 45.8 12.8 43 293-338 290-332 (752)
359 PRK14959 DNA polymerase III su 89.9 3.7 8.1E-05 46.3 12.4 38 177-214 23-63 (624)
360 PRK14969 DNA polymerase III su 89.9 3.4 7.3E-05 46.2 12.2 38 177-214 23-63 (527)
361 TIGR02782 TrbB_P P-type conjug 89.7 0.74 1.6E-05 47.3 6.4 42 173-214 116-157 (299)
362 PRK14955 DNA polymerase III su 89.7 3.1 6.6E-05 44.8 11.4 35 180-214 26-63 (397)
363 PRK11034 clpA ATP-dependent Cl 89.6 0.85 1.8E-05 53.0 7.5 30 191-222 490-519 (758)
364 COG1200 RecG RecG-like helicas 89.6 4.9 0.00011 45.1 12.8 131 413-565 258-393 (677)
365 TIGR02760 TraI_TIGR conjugativ 89.5 2.1 4.5E-05 55.3 11.3 62 172-233 428-492 (1960)
366 PRK00411 cdc6 cell division co 89.5 3 6.5E-05 44.8 11.2 26 190-215 56-81 (394)
367 PRK05896 DNA polymerase III su 89.4 3.8 8.3E-05 46.0 12.0 38 177-214 23-63 (605)
368 PRK00080 ruvB Holliday junctio 89.4 4.1 8.9E-05 42.6 11.9 25 190-214 52-76 (328)
369 TIGR01241 FtsH_fam ATP-depende 89.4 0.75 1.6E-05 51.1 6.7 33 189-223 88-120 (495)
370 PF06068 TIP49: TIP49 C-termin 89.4 0.78 1.7E-05 47.7 6.1 39 189-227 50-88 (398)
371 PRK13894 conjugal transfer ATP 89.3 0.9 1.9E-05 47.1 6.7 41 173-213 132-172 (319)
372 PLN00020 ribulose bisphosphate 89.2 0.71 1.5E-05 48.1 5.7 50 187-238 146-195 (413)
373 PRK13341 recombination factor 89.2 1.5 3.2E-05 50.8 8.9 24 190-213 53-76 (725)
374 CHL00095 clpC Clp protease ATP 89.2 0.74 1.6E-05 54.5 6.7 25 191-215 541-565 (821)
375 TIGR03345 VI_ClpV1 type VI sec 89.1 1 2.2E-05 53.3 7.8 31 192-222 599-629 (852)
376 PRK14950 DNA polymerase III su 89.1 3.9 8.5E-05 46.4 12.2 23 192-214 41-63 (585)
377 PRK07399 DNA polymerase III su 89.1 4.2 9.1E-05 42.1 11.4 24 191-214 28-51 (314)
378 PF06733 DEAD_2: DEAD_2; Inte 89.0 0.4 8.6E-06 45.0 3.5 36 276-311 120-159 (174)
379 CHL00206 ycf2 Ycf2; Provisiona 88.8 1 2.2E-05 56.1 7.5 41 189-231 1630-1670(2281)
380 TIGR00708 cobA cob(I)alamin ad 88.8 0.33 7.2E-06 45.2 2.8 57 290-346 90-148 (173)
381 COG0470 HolB ATPase involved i 88.6 2 4.3E-05 44.7 8.9 24 192-215 27-50 (325)
382 PRK14965 DNA polymerase III su 88.5 5.1 0.00011 45.3 12.5 38 177-214 23-63 (576)
383 PF00437 T2SE: Type II/IV secr 88.4 0.54 1.2E-05 47.6 4.4 48 176-223 114-162 (270)
384 PRK13900 type IV secretion sys 88.4 1.1 2.3E-05 46.9 6.6 44 179-222 150-193 (332)
385 PRK14964 DNA polymerase III su 88.2 4.4 9.6E-05 44.5 11.3 37 178-214 21-60 (491)
386 TIGR02397 dnaX_nterm DNA polym 88.1 8.2 0.00018 40.7 13.4 37 178-214 22-61 (355)
387 PRK12726 flagellar biosynthesi 88.1 14 0.0003 39.1 14.3 45 189-233 206-255 (407)
388 TIGR00580 mfd transcription-re 87.7 3.8 8.2E-05 48.9 11.2 102 464-566 478-583 (926)
389 TIGR03346 chaperone_ClpB ATP-d 87.7 2.9 6.3E-05 49.7 10.4 32 191-222 597-629 (852)
390 TIGR01074 rep ATP-dependent DN 87.7 3.1 6.8E-05 48.2 10.5 64 174-240 2-71 (664)
391 COG3598 RepA RecA-family ATPas 87.5 4.5 9.7E-05 41.2 9.8 113 180-310 80-207 (402)
392 TIGR02639 ClpA ATP-dependent C 87.5 1.9 4.1E-05 50.4 8.6 24 191-214 486-509 (731)
393 PRK14953 DNA polymerase III su 87.2 6.7 0.00015 43.3 12.2 23 192-214 41-63 (486)
394 PRK07133 DNA polymerase III su 87.0 5.9 0.00013 45.5 11.8 38 177-214 25-65 (725)
395 COG0593 DnaA ATPase involved i 86.9 3.7 8E-05 43.7 9.5 36 190-225 114-149 (408)
396 PF03354 Terminase_1: Phage Te 86.8 1.7 3.8E-05 48.0 7.4 50 176-225 1-63 (477)
397 TIGR02533 type_II_gspE general 86.8 1.7 3.7E-05 47.9 7.2 47 172-218 224-271 (486)
398 PRK14954 DNA polymerase III su 86.7 6.9 0.00015 44.4 12.1 24 191-214 40-63 (620)
399 TIGR03878 thermo_KaiC_2 KaiC d 86.7 3.7 7.9E-05 41.3 9.1 36 189-224 36-72 (259)
400 COG1222 RPT1 ATP-dependent 26S 86.6 3 6.4E-05 43.1 8.2 38 189-228 185-222 (406)
401 PRK06620 hypothetical protein; 86.6 2.6 5.7E-05 41.0 7.7 22 190-211 45-66 (214)
402 cd01122 GP4d_helicase GP4d_hel 86.6 9.7 0.00021 38.4 12.3 48 188-235 29-78 (271)
403 TIGR00678 holB DNA polymerase 86.5 5.4 0.00012 37.8 9.8 24 191-214 16-39 (188)
404 COG1223 Predicted ATPase (AAA+ 86.5 4.1 8.9E-05 40.1 8.7 40 189-230 151-190 (368)
405 PRK13849 putative crown gall t 86.5 6.5 0.00014 38.7 10.6 39 195-233 8-49 (231)
406 PRK10865 protein disaggregatio 86.4 1.8 4E-05 51.3 7.7 32 191-222 600-632 (857)
407 PRK05563 DNA polymerase III su 86.4 6.5 0.00014 44.3 11.7 37 178-214 24-63 (559)
408 TIGR02760 TraI_TIGR conjugativ 86.2 2.5 5.5E-05 54.5 9.2 56 172-227 1018-1079(1960)
409 KOG0733 Nuclear AAA ATPase (VC 86.1 2.3 5E-05 46.8 7.5 47 189-237 545-591 (802)
410 PRK13851 type IV secretion sys 85.9 1.6 3.4E-05 45.8 6.1 46 179-224 152-197 (344)
411 PRK14721 flhF flagellar biosyn 85.9 6.9 0.00015 42.1 11.0 52 188-239 190-244 (420)
412 COG1224 TIP49 DNA helicase TIP 85.8 0.94 2E-05 46.5 4.2 38 189-226 65-102 (450)
413 KOG0780 Signal recognition par 85.7 3 6.5E-05 43.3 7.7 95 192-313 104-199 (483)
414 PRK04132 replication factor C 85.7 4.7 0.0001 47.3 10.3 91 196-338 573-670 (846)
415 TIGR02237 recomb_radB DNA repa 85.6 4.9 0.00011 38.8 9.2 35 192-226 15-50 (209)
416 PF01695 IstB_IS21: IstB-like 85.6 0.7 1.5E-05 43.6 3.1 41 187-227 45-86 (178)
417 TIGR02012 tigrfam_recA protein 85.2 3.1 6.7E-05 43.0 7.7 51 180-230 41-97 (321)
418 PRK06647 DNA polymerase III su 85.2 15 0.00032 41.5 13.6 39 176-214 22-63 (563)
419 PHA03368 DNA packaging termina 85.1 3.2 6.9E-05 46.6 8.1 126 192-336 257-389 (738)
420 TIGR02655 circ_KaiC circadian 85.0 4.1 8.9E-05 45.1 9.2 63 176-238 246-313 (484)
421 COG2255 RuvB Holliday junction 84.9 1.9 4.2E-05 43.0 5.8 24 191-214 54-77 (332)
422 PRK10689 transcription-repair 84.9 6.8 0.00015 48.0 11.6 101 464-565 627-731 (1147)
423 COG0542 clpA ATP-binding subun 84.8 2.6 5.6E-05 48.5 7.5 33 190-222 522-554 (786)
424 smart00488 DEXDc2 DEAD-like he 84.7 0.93 2E-05 46.4 3.7 37 275-311 211-250 (289)
425 smart00489 DEXDc3 DEAD-like he 84.7 0.93 2E-05 46.4 3.7 37 275-311 211-250 (289)
426 PHA00729 NTP-binding motif con 84.5 6 0.00013 38.6 9.0 23 191-213 19-41 (226)
427 PRK14873 primosome assembly pr 84.5 4.9 0.00011 46.1 9.7 133 468-603 170-309 (665)
428 COG1855 ATPase (PilT family) [ 84.5 0.85 1.8E-05 48.2 3.2 38 181-218 255-292 (604)
429 TIGR02640 gas_vesic_GvpN gas v 84.3 2.4 5.2E-05 42.7 6.5 35 187-223 19-53 (262)
430 PRK08451 DNA polymerase III su 84.2 13 0.00029 41.3 12.6 36 179-214 23-61 (535)
431 TIGR01243 CDC48 AAA family ATP 84.1 1.9 4.1E-05 50.5 6.4 34 189-224 212-245 (733)
432 PRK09376 rho transcription ter 84.0 1.6 3.5E-05 46.0 5.1 28 187-214 167-194 (416)
433 cd01125 repA Hexameric Replica 83.9 11 0.00024 37.3 11.0 34 192-225 4-50 (239)
434 PRK06305 DNA polymerase III su 83.7 7.2 0.00016 42.7 10.2 24 191-214 41-64 (451)
435 KOG1133 Helicase of the DEAD s 83.6 16 0.00035 41.1 12.5 93 473-568 615-721 (821)
436 COG0630 VirB11 Type IV secreto 83.5 2.8 6E-05 43.4 6.6 137 172-351 126-262 (312)
437 PRK06995 flhF flagellar biosyn 83.5 9.4 0.0002 41.9 10.9 35 189-223 256-293 (484)
438 COG1198 PriA Primosomal protei 83.5 3.2 6.9E-05 47.7 7.5 136 465-603 224-365 (730)
439 KOG0744 AAA+-type ATPase [Post 83.4 9.8 0.00021 38.8 9.9 68 168-235 148-230 (423)
440 cd00561 CobA_CobO_BtuR ATP:cor 83.3 1.2 2.5E-05 41.0 3.3 56 291-346 89-146 (159)
441 KOG0651 26S proteasome regulat 83.0 3.1 6.6E-05 42.1 6.2 40 189-230 166-205 (388)
442 PRK11054 helD DNA helicase IV; 82.9 2.4 5.2E-05 48.8 6.5 65 172-239 195-265 (684)
443 TIGR02788 VirB11 P-type DNA tr 82.9 2.2 4.8E-05 44.1 5.7 45 178-222 133-177 (308)
444 PF11285 DUF3086: Protein of u 82.7 37 0.00079 33.3 13.0 119 167-311 133-260 (283)
445 PF05127 Helicase_RecD: Helica 82.6 1.3 2.9E-05 41.4 3.5 34 297-337 90-123 (177)
446 cd01128 rho_factor Transcripti 82.5 3.9 8.4E-05 40.8 7.0 28 187-214 14-41 (249)
447 PF01443 Viral_helicase1: Vira 82.1 3 6.5E-05 41.0 6.1 40 297-341 62-101 (234)
448 PRK10436 hypothetical protein; 82.1 3.2 6.9E-05 45.4 6.7 46 173-218 201-247 (462)
449 KOG2028 ATPase related to the 81.8 5.9 0.00013 40.9 7.9 33 182-214 153-187 (554)
450 cd00983 recA RecA is a bacter 81.8 4.2 9.1E-05 42.1 7.1 50 180-229 41-96 (325)
451 PF07015 VirC1: VirC1 protein; 81.8 5.8 0.00013 38.7 7.6 41 196-236 9-52 (231)
452 cd00544 CobU Adenosylcobinamid 81.7 8.9 0.00019 35.7 8.7 46 192-239 2-48 (169)
453 PRK08058 DNA polymerase III su 81.6 15 0.00033 38.3 11.4 23 192-214 31-53 (329)
454 PRK05342 clpX ATP-dependent pr 81.5 1.9 4.2E-05 46.3 4.7 32 189-222 108-139 (412)
455 PRK14723 flhF flagellar biosyn 81.3 11 0.00025 43.5 10.9 124 189-350 185-318 (767)
456 COG1197 Mfd Transcription-repa 80.8 13 0.00027 44.6 11.2 105 464-577 621-729 (1139)
457 COG2109 BtuR ATP:corrinoid ade 80.6 6.1 0.00013 37.1 6.9 63 291-353 116-180 (198)
458 TIGR03819 heli_sec_ATPase heli 80.5 3.9 8.4E-05 42.9 6.5 49 174-222 163-211 (340)
459 PRK12608 transcription termina 80.4 4.7 0.0001 42.5 6.9 40 176-215 118-159 (380)
460 COG3973 Superfamily I DNA and 80.4 2.9 6.3E-05 46.0 5.5 66 172-239 211-283 (747)
461 COG3972 Superfamily I DNA and 80.2 12 0.00025 40.5 9.6 42 198-239 185-230 (660)
462 PRK10733 hflB ATP-dependent me 79.8 4.2 9.1E-05 46.7 7.0 36 189-226 185-220 (644)
463 COG4962 CpaF Flp pilus assembl 79.7 4.2 9.1E-05 41.9 6.1 51 172-222 156-206 (355)
464 PF13479 AAA_24: AAA domain 79.7 4.5 9.8E-05 39.3 6.3 32 278-309 47-80 (213)
465 TIGR00767 rho transcription te 79.6 5 0.00011 42.6 6.8 29 187-215 166-194 (415)
466 PF01745 IPT: Isopentenyl tran 79.4 2.3 5E-05 40.7 3.9 29 192-222 4-32 (233)
467 PF01637 Arch_ATPase: Archaeal 79.0 15 0.00033 35.6 10.0 36 180-215 9-46 (234)
468 TIGR02538 type_IV_pilB type IV 78.9 5.6 0.00012 44.9 7.5 44 172-215 298-342 (564)
469 cd01393 recA_like RecA is a b 78.7 16 0.00035 35.6 10.0 38 189-226 19-63 (226)
470 COG0541 Ffh Signal recognition 78.6 14 0.0003 39.5 9.6 90 192-311 103-196 (451)
471 TIGR03574 selen_PSTK L-seryl-t 78.3 16 0.00035 36.4 10.0 31 192-222 2-33 (249)
472 KOG1942 DNA helicase, TBP-inte 78.3 2 4.3E-05 42.9 3.1 32 189-220 64-95 (456)
473 KOG1051 Chaperone HSP104 and r 78.3 7.6 0.00016 45.5 8.3 95 176-309 565-672 (898)
474 PF07724 AAA_2: AAA domain (Cd 78.0 3.5 7.6E-05 38.5 4.7 34 191-224 5-39 (171)
475 PRK09361 radB DNA repair and r 77.6 23 0.0005 34.5 10.7 47 179-225 9-60 (225)
476 PHA03372 DNA packaging termina 77.6 3.1 6.7E-05 46.1 4.7 122 191-336 205-336 (668)
477 PF06745 KaiC: KaiC; InterPro 77.3 3.4 7.3E-05 40.5 4.7 50 189-238 19-70 (226)
478 PRK14971 DNA polymerase III su 77.1 28 0.00062 39.7 12.5 37 178-214 25-64 (614)
479 TIGR02525 plasmid_TraJ plasmid 77.0 4.5 9.8E-05 42.9 5.7 33 182-214 142-174 (372)
480 PRK05973 replicative DNA helic 76.9 4.4 9.6E-05 40.0 5.2 49 188-236 63-112 (237)
481 TIGR00150 HI0065_YjeE ATPase, 76.8 3.6 7.7E-05 36.6 4.1 35 189-225 22-56 (133)
482 COG2842 Uncharacterized ATPase 76.7 16 0.00034 36.9 9.0 41 295-338 163-203 (297)
483 PRK09354 recA recombinase A; P 76.4 9.4 0.0002 40.0 7.7 50 180-229 46-101 (349)
484 COG1474 CDC6 Cdc6-related prot 76.3 17 0.00038 38.4 9.9 44 173-216 20-69 (366)
485 TIGR00763 lon ATP-dependent pr 76.3 8.4 0.00018 45.4 8.3 25 190-214 348-372 (775)
486 PF00158 Sigma54_activat: Sigm 76.1 9.8 0.00021 35.4 7.1 49 183-231 16-65 (168)
487 PRK05564 DNA polymerase III su 75.9 32 0.00069 35.6 11.7 39 176-214 10-51 (313)
488 PF02456 Adeno_IVa2: Adenoviru 75.9 15 0.00032 37.4 8.4 46 192-237 90-144 (369)
489 PRK13531 regulatory ATPase Rav 75.3 5.5 0.00012 43.4 5.8 39 177-215 27-65 (498)
490 PF02367 UPF0079: Uncharacteri 74.9 3.6 7.8E-05 36.0 3.6 37 187-225 13-49 (123)
491 TIGR03877 thermo_KaiC_1 KaiC d 74.7 6.5 0.00014 38.9 5.9 58 179-236 7-69 (237)
492 PF14532 Sigma54_activ_2: Sigm 74.7 8.8 0.00019 34.3 6.3 29 184-212 16-44 (138)
493 KOG0733 Nuclear AAA ATPase (VC 74.5 5.9 0.00013 43.8 5.8 38 189-228 223-260 (802)
494 TIGR01650 PD_CobS cobaltochela 74.5 7.4 0.00016 40.2 6.3 46 175-222 50-95 (327)
495 PRK08760 replicative DNA helic 74.2 4.2 9.1E-05 44.8 4.8 50 189-238 229-280 (476)
496 PF03237 Terminase_6: Terminas 74.2 26 0.00056 36.8 10.9 23 291-313 91-113 (384)
497 TIGR02655 circ_KaiC circadian 73.4 13 0.00029 41.1 8.5 60 179-238 7-72 (484)
498 PHA00012 I assembly protein 73.2 3.9 8.6E-05 41.9 3.9 26 193-218 5-30 (361)
499 TIGR03881 KaiC_arch_4 KaiC dom 73.0 7.1 0.00015 38.3 5.8 46 189-234 20-66 (229)
500 PF12775 AAA_7: P-loop contain 72.9 5.5 0.00012 40.3 4.9 36 182-217 26-61 (272)
No 1
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-88 Score=677.39 Aligned_cols=551 Identities=38% Similarity=0.593 Sum_probs=445.7
Q ss_pred eEEEEEEeeCCeEEEEecCCHHHHHHHhcCCCcccccccceeeecCcchhHHHHHHHHhcCcceeeccccHHHHHHHHhc
Q 005980 74 LSVKFFLHTSGNIAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNVEIENLHPLVQRAIASA 153 (666)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (666)
++.+|.+.....++...+ +..+.+.+++++.+.||.+.+.|.+..+.+-.++...++.....+++++++.-. -.+...
T Consensus 101 vk~rc~~~~r~~~~~~~s-h~~l~d~~kq~d~r~yDvkk~sw~~~~sd~v~v~~i~k~~~avkv~ld~lp~~~-l~~a~~ 178 (689)
T KOG1000|consen 101 VKLRCDIGDRIKIEFYPS-HSALIDLIKQVDSRNYDVKKRSWTVASSDHVTVSNILKNATAVKVELDPLPQNI-LGLANF 178 (689)
T ss_pred eEEEEEeccceeEEecCc-HHHHHHHHhhcchhccccccceeEEecccceeeecchhhhhcceeeeccccccc-eehhcc
Confidence 677788877777776655 558999999999999999999999998887777666666555666676665322 111111
Q ss_pred ccCCchhhhccCCChhhhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q 005980 154 SAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAA 233 (666)
Q Consensus 154 ~~~~~~~~~~~~~p~~~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~ 233 (666)
.......+...-+|+.+-..|.|||++||.|++++|||++||||||+|||+|||+++.+|+..||+|||||+++...|.+
T Consensus 179 ~~ea~~~~l~ev~d~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~ 258 (689)
T KOG1000|consen 179 KPEAAPSDLNEVMDPKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAK 258 (689)
T ss_pred CCccCHHHHhhccCHHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHH
Confidence 11111122223457888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh
Q 005980 234 MIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 234 e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~ 313 (666)
++.+|++.-.. |.++..+ .+ ...+......|.|+||+++....+.+....|.+||+||||++|+..
T Consensus 259 al~r~lps~~p-i~vv~~~---~D----------~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sk 324 (689)
T KOG1000|consen 259 ALNRFLPSIHP-IFVVDKS---SD----------PLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSK 324 (689)
T ss_pred HHHHhcccccc-eEEEecc---cC----------CccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccc
Confidence 99999974332 3333221 11 1122334466899999999999999988889999999999999999
Q ss_pred HHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccc---cccCCCCHHHHHHHhh
Q 005980 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFG---IYQGASNHEELHNLMK 390 (666)
Q Consensus 314 s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~l~~ll~ 390 (666)
+++++++..+++.++++|+|||||..++|.|||.++..+++.+|.++++|+.+||.+...+ .+.|.+|.++|+.++.
T Consensus 325 tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~ 404 (689)
T KOG1000|consen 325 TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLF 404 (689)
T ss_pred hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986544 4789999999999999
Q ss_pred hhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccc
Q 005980 391 ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEA 470 (666)
Q Consensus 391 ~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (666)
..+|+||+|.+|+++||+|++.++++.-.... ....++..+..+ .. ..+. ...........|...+.+
T Consensus 405 k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~d-a~~~~lv~~a~~----~t---~~~~----~e~~~~~l~l~y~~tgia 472 (689)
T KOG1000|consen 405 KRLMIRRLKADVLKQLPPKRREVVYVSGGRID-ARMDDLVKAAAD----YT---KVNS----MERKHESLLLFYSLTGIA 472 (689)
T ss_pred HHHHHHHHHHHHHhhCCccceEEEEEcCCccc-hHHHHHHHHhhh----cc---hhhh----hhhhhHHHHHHHHHhccc
Confidence 99999999999999999997776666443322 222222222111 00 0000 001122233456778889
Q ss_pred cHHHHHHHHHH----HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 471 KIPAVLDYLET----VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 471 Kl~~l~~~l~~----~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
|+.++.++|.. .-..+.|++||+||..++|.|...+.++++.+++|+|+|++.+|+.+++.||.++.++|.++|+.
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt 552 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT 552 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEe
Confidence 99999999988 34568899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCccccc
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~~~~ 626 (666)
|+|+||+|++|+.|||++++|||+.+.||++|+||+||++.|.||||+++||+||.+|.++++|++.++++-.|..+...
T Consensus 553 A~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~~~~ 632 (689)
T KOG1000|consen 553 AAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDTFRT 632 (689)
T ss_pred ecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877655433
Q ss_pred cccccccCChhhHhhHHHH-HHhccCC
Q 005980 627 VSSSQIRSSPAKQKTLDSF-LKRCNNV 652 (666)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~~-~~~~~~~ 652 (666)
.+.-.....-..|+++.++ ++.|++.
T Consensus 633 ~e~~g~s~~~~aq~~i~~~~~k~~~~t 659 (689)
T KOG1000|consen 633 AEKMGLSFNDAAQPGIAEYLKKTPDTT 659 (689)
T ss_pred ecccceeecCcccchHHHHHhhCCCCc
Confidence 3333333333455556555 5666643
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.2e-79 Score=646.07 Aligned_cols=455 Identities=28% Similarity=0.438 Sum_probs=381.6
Q ss_pred CCChhhhhcCchHHHHHHHHHHH---cCCCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCCcchHHHHHHHHH
Q 005980 165 QIPAHIESKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPSSLRLHWAAMIQQ 237 (666)
Q Consensus 165 ~~p~~~~~~L~p~Q~~~v~~~~~---~~~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~sl~~qW~~e~~~ 237 (666)
.+|..+...|+|||++||+||++ ++.|+||+||||||||+|.+++++.+.. .+|+|||||++++.||..|+..
T Consensus 197 ~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 197 KVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQT 276 (923)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHH
Confidence 58999999999999999999974 4667799999999999999999887633 5899999999999999999999
Q ss_pred HhcCCCCcEEEEEecCCCCCccceeE---EecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhH
Q 005980 238 WLNIPPSEIVVVLSQLGGSNRSGFTI---VSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s 314 (666)
|. |+..+.+......+........ ....-.......+.+.||||+.+....+.+....|+++|+||+|+|+|+++
T Consensus 277 w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 277 WW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred hC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCcc
Confidence 98 4445544443333222111110 000011122235668899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHH---------HH
Q 005980 315 KRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE---------EL 385 (666)
Q Consensus 315 ~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~---------~l 385 (666)
+.+.++..+ ++.+|++|||||++|++.|||++++|+.|+.+++...|.+.|.-++..|.+...++.. .|
T Consensus 355 ~islackki--~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 355 KISLACKKI--RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHHhc--cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999998888887776654 68
Q ss_pred HHHhhhhhhhhehhhhhhh-cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHH-------------hHHHhcCCHHHHhh
Q 005980 386 HNLMKATVMIRRLKKDVLA-QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK-------------GKIKACKSEEEVQS 451 (666)
Q Consensus 386 ~~ll~~~~~lrr~k~~v~~-~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 451 (666)
+.++. ++++||+|.+|.. .||.|.+++++|.+++.|++.|.+....-.... ...+.|+++..+..
T Consensus 433 r~lI~-PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 433 RDLIS-PYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHhH-HHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 88888 7999999999998 999999999999999999999998776533221 11233443333222
Q ss_pred chhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHH-hCCceEEEEECCCCHHHHHHHHH
Q 005980 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFL-KKKVHCIRIDGGTPPASRQALVT 530 (666)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~-~~g~~~~~i~G~~~~~~R~~~i~ 530 (666)
........-...-....++|++.+..++..+...|.|+|+|++...|+++|+.+|. ..|+.|++++|.|+...|+.+|+
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 11000000000012235789999999999999999999999999999999999999 68999999999999999999999
Q ss_pred HhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 531 EFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 531 ~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
+|++++++.|||++|+|||.|+||+.|+.||+|||.|||....||..|++|+||+++|.||||++.|||||+||.++--|
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCccc
Q 005980 611 LENLGQVLDGHENS 624 (666)
Q Consensus 611 ~~~~~~~l~~~~~~ 624 (666)
..+...++.+.+..
T Consensus 672 q~Ltn~il~~p~q~ 685 (923)
T KOG0387|consen 672 QFLTNRILKNPEQR 685 (923)
T ss_pred HHHHHHHhcCHHHh
Confidence 99999998886543
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.1e-79 Score=640.55 Aligned_cols=441 Identities=26% Similarity=0.410 Sum_probs=366.4
Q ss_pred CChhhh-hcCchHHHHHHHHHHH---cCCCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCCcchHHHHHHHHH
Q 005980 166 IPAHIE-SKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPSSLRLHWAAMIQQ 237 (666)
Q Consensus 166 ~p~~~~-~~L~p~Q~~~v~~~~~---~~~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~sl~~qW~~e~~~ 237 (666)
.|..+. ..|+|||.+|++|++. +|-+|||||+||||||+|+|+++.+++. .+|.||+||.|.+.+|..||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 577777 8999999999999974 5778999999999999999999887743 7999999999999999999999
Q ss_pred HhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHH
Q 005980 238 WLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 317 (666)
|++ ...++++.+ .+.++..+..... .....+|+||||++..+..+.|..++|.++||||||++||.++..+
T Consensus 239 f~P--~l~~~~~~G----dk~eR~~~~r~~~---~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 239 FTP--SLNVVVYHG----DKEERAALRRDIM---LPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred hCC--CcceEEEeC----CHHHHHHHHHHhh---ccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHH
Confidence 994 444443322 2222221111111 1125679999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+.+..+ ++.++++|||||++|++.|||++|+|+.|++|++.+.|...|......+ +..-..+|+.++. ++++||
T Consensus 310 ~~lr~f--~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~---~~e~v~~Lh~vL~-pFlLRR 383 (971)
T KOG0385|consen 310 KILREF--KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG---DQELVSRLHKVLR-PFLLRR 383 (971)
T ss_pred HHHHHh--cccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc---CHHHHHHHHhhhh-HHHHHH
Confidence 999988 9999999999999999999999999999999999999999987653322 2225668899998 799999
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHH---------------HHHHhHHHhcCCHHHHhhchhhHHHHHHh
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL---------------EVVKGKIKACKSEEEVQSLKFTEKNLINK 462 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (666)
+|.+|...||++.+..+++.|+..|.+-|..+...- ..+..-+..|++.+.+-............
T Consensus 384 ~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttd 463 (971)
T KOG0385|consen 384 IKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTD 463 (971)
T ss_pred HHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcc
Confidence 999999999999999999999999999888766441 11122222222222111000000000000
Q ss_pred hhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCC-CceEE
Q 005980 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAA 541 (666)
Q Consensus 463 ~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~v~ 541 (666)
.....+++|+..|-++|..+.+.|+|||||+|++.++|.|++++.-+|+.|++|+|+|+.++|...++.|+..+ .+.||
T Consensus 464 ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 464 EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 00113678999999999999999999999999999999999999999999999999999999999999999876 47899
Q ss_pred EEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 005980 542 VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621 (666)
Q Consensus 542 L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~ 621 (666)
|+||+|||.||||++|++||+||..|||....||.+|||||||+++|.||+|++++||||+|+++...|+++-.-++.++
T Consensus 544 lLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred EEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888876
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.6e-74 Score=654.55 Aligned_cols=442 Identities=24% Similarity=0.368 Sum_probs=360.9
Q ss_pred cCCChhhhhcCchHHHHHHHHHHH---cCCCeeeecCCCCcHHHHHHHHHHhcC----CCCcEEEEeCCcchHHHHHHHH
Q 005980 164 DQIPAHIESKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCFR----DVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 164 ~~~p~~~~~~L~p~Q~~~v~~~~~---~~~~~iLad~~GlGKTi~ala~~~~~~----~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
...|..+..+|+|||++|++||+. +|.+|||||+||+|||+|+++++.++. ..+|+|||||.+++.||.+|+.
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~ 239 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIR 239 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHH
Confidence 356888889999999999999974 678899999999999999999988763 2579999999999999999999
Q ss_pred HHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHH
Q 005980 237 QWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKR 316 (666)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 316 (666)
+|++ ...++.+. +.......... .........|+||||+++.+....+....|++|||||||++||..++.
T Consensus 240 kw~p--~l~v~~~~----G~~~eR~~~~~---~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Skl 310 (1033)
T PLN03142 240 RFCP--VLRAVKFH----GNPEERAHQRE---ELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLL 310 (1033)
T ss_pred HHCC--CCceEEEe----CCHHHHHHHHH---HHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHH
Confidence 9984 22333222 11111100000 000112356889999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhh
Q 005980 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIR 396 (666)
Q Consensus 317 ~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lr 396 (666)
++++..+ +++++|+|||||++|++.|||++|+||.|+.|++...|...|+.+... ........|+.++. ++++|
T Consensus 311 skalr~L--~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---~~~e~i~~L~~~L~-pf~LR 384 (1033)
T PLN03142 311 SKTMRLF--STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---DQQEVVQQLHKVLR-PFLLR 384 (1033)
T ss_pred HHHHHHh--hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---chHHHHHHHHHHhh-HHHhh
Confidence 9999988 899999999999999999999999999999999999999998764221 11233567888887 79999
Q ss_pred ehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHH-------------hHH-HhcCCHHHHhhchhhHHHHHHh
Q 005980 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK-------------GKI-KACKSEEEVQSLKFTEKNLINK 462 (666)
Q Consensus 397 r~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~ 462 (666)
|+|.+|...||++.+..++|.+++.|...|..+........ ..+ +.|.++..+...... ......
T Consensus 385 R~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~-~~~~~~ 463 (1033)
T PLN03142 385 RLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG-PPYTTG 463 (1033)
T ss_pred hhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccccc-Ccccch
Confidence 99999999999999999999999999999988765432211 111 112221111100000 000000
Q ss_pred hhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCC-CceEE
Q 005980 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAA 541 (666)
Q Consensus 463 ~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~v~ 541 (666)
......++|+..+.++|..+...|+||||||++..++++|+++|...|+.+++|+|+++..+|+.++++|+.++ ...++
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~Vf 543 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVF 543 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEE
Confidence 00113578999999999999899999999999999999999999999999999999999999999999998754 35689
Q ss_pred EEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 005980 542 VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621 (666)
Q Consensus 542 L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~ 621 (666)
|+||+|||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|+++|||||+|++++..|+.+...+++++
T Consensus 544 LLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g 623 (1033)
T PLN03142 544 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG 623 (1033)
T ss_pred EEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888764
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-73 Score=601.52 Aligned_cols=441 Identities=29% Similarity=0.425 Sum_probs=351.5
Q ss_pred hcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhcCCCCc
Q 005980 172 SKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~ 245 (666)
.+|.|||+-||+|+. +++-.||||||||||||+|+||+.++++ ..+|.|||||+|.+.||.+||.+||+ ...
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCP--sl~ 475 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCP--SLK 475 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCC--ceE
Confidence 379999999999985 5667789999999999999999999885 47899999999999999999999994 322
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH---HHHHHHhcCCccEEEEcCccccCChhHHHHHHhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL---KLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~---~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~ 322 (666)
+.. |.|+..++..+....... . .+.+|.+|||+.+. .+...|...+|+++|.||+|.+||..|.|++.++.
T Consensus 476 ---Ve~-YyGSq~ER~~lR~~i~~~-~-~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389|consen 476 ---VEP-YYGSQDERRELRERIKKN-K-DDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred ---EEe-ccCcHHHHHHHHHHHhcc-C-CCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc
Confidence 222 233333222221111111 1 25679999999986 34567888999999999999999999999999999
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHH-HhhhhhcCccc-cccc----CCCCHHHHHHHhhhhhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHE-YGNRYCKGGVF-GIYQ----GASNHEELHNLMKATVMIR 396 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~-f~~~~~~~~~~-~~~~----~~~~~~~l~~ll~~~~~lr 396 (666)
+ ++.+|++|||||++|++.||+++|.|+.|.+|.+..+ +...|...... +... ......+...+|+ ++++|
T Consensus 550 I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~-PFILR 626 (941)
T KOG0389|consen 550 I--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK-PFILR 626 (941)
T ss_pred c--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh-HHHHH
Confidence 9 8999999999999999999999999999999976433 44444322111 1000 0112344556676 79999
Q ss_pred ehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHh----------------HHHhcCCH--------------
Q 005980 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKG----------------KIKACKSE-------------- 446 (666)
Q Consensus 397 r~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-------------- 446 (666)
|.|++|+..||+|..++.+|+|++.|...|..++........ ..+...++
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 999999999999999999999999999999887766521111 11111110
Q ss_pred --------------------HHHhh-chhhHHHHHHhhhcC----------CccccHHHHHHHHHHHHHcCCEEEEEecc
Q 005980 447 --------------------EEVQS-LKFTEKNLINKIYTD----------SAEAKIPAVLDYLETVIEAGCKFLIFAHH 495 (666)
Q Consensus 447 --------------------~~~~~-~~~~~~~~~~~~~~~----------~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~ 495 (666)
+++.. ..+....++.+.-.. -.++|+..|..+|..+..+|+|||||+||
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 00000 011122222222111 13689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhh
Q 005980 496 QPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQA 575 (666)
Q Consensus 496 ~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa 575 (666)
+.|+|+|+..|...|++|.+++|+|....|+.+|+.|+.+.++.|||+||+|||.||||+.|++||++|.++||-...||
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 576 EDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 576 ~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
++|+||+||+++|+||+||+++||||.|+.+.+.|+.+=..+.++...
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 999999999999999999999999999999999999877777666543
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.9e-73 Score=618.82 Aligned_cols=459 Identities=29% Similarity=0.471 Sum_probs=368.7
Q ss_pred CCChhhhhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHh---cC-------CCCcEEEEeCCcchHHH
Q 005980 165 QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATC---FR-------DVWPVLILTPSSLRLHW 231 (666)
Q Consensus 165 ~~p~~~~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~---~~-------~~~~~LIv~P~sl~~qW 231 (666)
.+|..++.+||.||.+||+|+. +.+-.+||||+||+|||+|++++++. .+ ...|.|||||++|..+|
T Consensus 967 ~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW 1046 (1549)
T KOG0392|consen 967 KIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHW 1046 (1549)
T ss_pred ccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHH
Confidence 3667788899999999999984 33445699999999999999998873 23 24589999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 005980 232 AAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 232 ~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn 311 (666)
+.|+.+|++. ..+..++ |....+. ..+....+..|+|+||+.++++.+.+.+..|.++|+||.|-+||
T Consensus 1047 ~~E~~kf~pf--L~v~~yv----g~p~~r~------~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN 1114 (1549)
T KOG0392|consen 1047 KSEVKKFFPF--LKVLQYV----GPPAERR------ELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKN 1114 (1549)
T ss_pred HHHHHHhcch--hhhhhhc----CChHHHH------HHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecc
Confidence 9999999964 2222221 1111111 11222234568999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccc---------cCCCCH
Q 005980 312 AQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY---------QGASNH 382 (666)
Q Consensus 312 ~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~---------~~~~~~ 382 (666)
..++.++++..+ ++.+|+.|||||++|++.|||++++||.|+++|+-++|..+|.+++..... .|.-..
T Consensus 1115 ~ktkl~kavkqL--~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAl 1192 (1549)
T KOG0392|consen 1115 SKTKLTKAVKQL--RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLAL 1192 (1549)
T ss_pred hHHHHHHHHHHH--hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHH
Confidence 999999999999 999999999999999999999999999999999999999999988655432 344456
Q ss_pred HHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHH-----------------------HHhH
Q 005980 383 EELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEV-----------------------VKGK 439 (666)
Q Consensus 383 ~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 439 (666)
+.||+..- +||+||+|.||+++||+|..+..+|++++-|.+.|.....+... +...
T Consensus 1193 eaLHKqVL-PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYl 1271 (1549)
T KOG0392|consen 1193 EALHKQVL-PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYL 1271 (1549)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHH
Confidence 68888887 79999999999999999999999999999999999887766211 1111
Q ss_pred HHhcCCHHHHhhchh-hHHHHHHh-------hhcCCccccHHHHHHHHHHHHH--------------cCCEEEEEeccHH
Q 005980 440 IKACKSEEEVQSLKF-TEKNLINK-------IYTDSAEAKIPAVLDYLETVIE--------------AGCKFLIFAHHQP 497 (666)
Q Consensus 440 ~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~Kl~~l~~~l~~~~~--------------~g~KvlVF~~~~~ 497 (666)
.+.|.++.-...-.. ........ ......++|+.+|.++|.++-- .++|+|||||+++
T Consensus 1272 rKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~ 1351 (1549)
T KOG0392|consen 1272 RKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKS 1351 (1549)
T ss_pred HHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHH
Confidence 122222111100000 00001111 1112357899999999987621 3689999999999
Q ss_pred HHHHHHHHHHhC---CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhh
Q 005980 498 MLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQ 574 (666)
Q Consensus 498 ~~~~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Q 574 (666)
++|++++-|-+. .+.|.+++|+.++.+|++++++||+++.+.|+|++|.+||.|+||++|++|||++-.|||....|
T Consensus 1352 mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQ 1431 (1549)
T KOG0392|consen 1352 MLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1431 (1549)
T ss_pred HHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHH
Confidence 999999987665 56788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCccccccccccccCChhhHhhHHHHH
Q 005980 575 AEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFL 646 (666)
Q Consensus 575 a~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 646 (666)
|++||||+||++.|+||||+++||+||+|+.++.-|.+.++.++..+-..+ +++.+.+-||-|-
T Consensus 1432 AMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl--------~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1432 AMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASL--------ETMDTDQLLDLFT 1495 (1549)
T ss_pred HHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccc--------cccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988754322 2334444566664
No 7
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.2e-70 Score=602.61 Aligned_cols=441 Identities=26% Similarity=0.412 Sum_probs=361.5
Q ss_pred ccCCChhhh-hcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhcC----CCCcEEEEeCCcchHHHHHH
Q 005980 163 YDQIPAHIE-SKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFR----DVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 163 ~~~~p~~~~-~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~~----~~~~~LIv~P~sl~~qW~~e 234 (666)
+...|..++ .+||+||.+|++||+ .++.+||||||||||||+|.++++.++. -.+|+|||||-|.+.+|++|
T Consensus 359 le~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~e 438 (1373)
T KOG0384|consen 359 LEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWERE 438 (1373)
T ss_pred hhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHH
Confidence 344555443 489999999999997 3477899999999999999999988763 47899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEecCCCCCc-cceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh
Q 005980 235 IQQWLNIPPSEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~ 313 (666)
|..|+.+ +++++.+...+... ..+..+.... .....+.+.||||+.+.++...|..++|.++++||||++||..
T Consensus 439 f~~w~~m---n~i~y~g~~~sr~~i~~ye~~~~~~--~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~ 513 (1373)
T KOG0384|consen 439 FETWTDM---NVIVYHGNLESRQLIRQYEFYHSSN--TKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDE 513 (1373)
T ss_pred HHHHhhh---ceeeeecchhHHHHHHHHHheecCC--ccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchH
Confidence 9999843 33333221111110 1122222111 2234567889999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhh
Q 005980 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393 (666)
Q Consensus 314 s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 393 (666)
++.+..+..+ +..+++++||||++|++.|||++++|+.|+-|.+..+|...|... .......|+..|+ ++
T Consensus 514 ~~l~~~l~~f--~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~-------~e~~~~~L~~~L~-P~ 583 (1373)
T KOG0384|consen 514 SKLYESLNQF--KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE-------TEEQVRKLQQILK-PF 583 (1373)
T ss_pred HHHHHHHHHh--cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch-------hHHHHHHHHHHhh-HH
Confidence 9999998877 899999999999999999999999999999999999999887222 1223567888888 79
Q ss_pred hhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHH---------------HHHhHHHhcCCHHHHh-hchhh--
Q 005980 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE---------------VVKGKIKACKSEEEVQ-SLKFT-- 455 (666)
Q Consensus 394 ~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~-- 455 (666)
|+||+|+||-..||++.+.++.|+|+.-|.+.|..++...- .+...++.|+..+.+- .....
T Consensus 584 ~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~ 663 (1373)
T KOG0384|consen 584 LLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKIL 663 (1373)
T ss_pred HHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHH
Confidence 99999999999999999999999999999988887765532 2233445554433221 10000
Q ss_pred -------HHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHH
Q 005980 456 -------EKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQAL 528 (666)
Q Consensus 456 -------~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~ 528 (666)
....+..+. .+++|+-.|-.+|..+.+.|+|||||+|.+.|+|+|.++|..+|++|-+|+|+++.+-|+.+
T Consensus 664 ~~~~~~~~d~~L~~lI--~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 664 GDFRDKMRDEALQALI--QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred HhhhhcchHHHHHHHH--HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHH
Confidence 001112222 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-CceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 529 VTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 529 i~~F~~~~-~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
+++|+... +-+|||+||+|||.||||..|++||++|..|||....||..|||||||++.|.|||||++||+||.|+++.
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 99999764 35899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcC
Q 005980 608 RSKLENLGQVLDG 620 (666)
Q Consensus 608 ~~K~~~~~~~l~~ 620 (666)
..|+-+=..|+..
T Consensus 822 k~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 822 KLKMVLDHAVIQR 834 (1373)
T ss_pred HHHhhhHHHHHHh
Confidence 9998776666554
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-70 Score=592.53 Aligned_cols=446 Identities=26% Similarity=0.421 Sum_probs=364.9
Q ss_pred CCChhhhhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhc----CCCCcEEEEeCCcchHHHHHHHHH
Q 005980 165 QIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQ 237 (666)
Q Consensus 165 ~~p~~~~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~----~~~~~~LIv~P~sl~~qW~~e~~~ 237 (666)
.+|.-+.+.||.||+.|++||. +++-++|||||||||||+|.|++++++ .+-+|.|||||++++.+|+-||++
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKR 686 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKR 686 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhh
Confidence 5788899999999999999985 566778999999999999999988876 356799999999999999999999
Q ss_pred HhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHH
Q 005980 238 WLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRT 317 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 317 (666)
|++ ...|+-+ ++.. +++.... ........++|.||||..+......|...+|.++|+||||++||..++++
T Consensus 687 wcP--glKILTY---yGs~-kErkeKR---qgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrW 757 (1958)
T KOG0391|consen 687 WCP--GLKILTY---YGSH-KERKEKR---QGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRW 757 (1958)
T ss_pred hCC--cceEeee---cCCH-HHHHHHh---hcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHH
Confidence 994 4344333 2221 1111100 12233456789999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcc----cccccCCCCHHHHHHHhhhhh
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGV----FGIYQGASNHEELHNLMKATV 393 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~~l~~ll~~~~ 393 (666)
++++.+ ++.+|++|||||++|++.|||++++||.|..|.+.+.|+.+|.++.. -+..-+..-...||.+++ +|
T Consensus 758 QAllnf--nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlr-Pf 834 (1958)
T KOG0391|consen 758 QALLNF--NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLR-PF 834 (1958)
T ss_pred HHHhcc--chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhH-HH
Confidence 999999 99999999999999999999999999999999999999999988632 122223344568999998 79
Q ss_pred hhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHH---------------HHHHhHHHhcCCHHHHh--------
Q 005980 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL---------------EVVKGKIKACKSEEEVQ-------- 450 (666)
Q Consensus 394 ~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-------- 450 (666)
++||+|.||.++||.|.+|+|.|.++..|+..|.+...+- .-+....+.|++++.+.
T Consensus 835 iLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssf 914 (1958)
T KOG0391|consen 835 ILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSF 914 (1958)
T ss_pred HHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 9999999999999999999999999999998887755331 00111111111100000
Q ss_pred -------------------------------------------------------------------------hchhh--
Q 005980 451 -------------------------------------------------------------------------SLKFT-- 455 (666)
Q Consensus 451 -------------------------------------------------------------------------~~~~~-- 455 (666)
...|.
T Consensus 915 V~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~ 994 (1958)
T KOG0391|consen 915 VAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTS 994 (1958)
T ss_pred ccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccc
Confidence 00000
Q ss_pred --------------------------------------------------------------------------------
Q 005980 456 -------------------------------------------------------------------------------- 455 (666)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (666)
T Consensus 995 aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap 1074 (1958)
T KOG0391|consen 995 AASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAP 1074 (1958)
T ss_pred hhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCC
Confidence
Q ss_pred --------------------------------------------------------HHH----HHHhhhcCC--------
Q 005980 456 --------------------------------------------------------EKN----LINKIYTDS-------- 467 (666)
Q Consensus 456 --------------------------------------------------------~~~----~~~~~~~~~-------- 467 (666)
.++ .+..++..+
T Consensus 1075 ~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~ 1154 (1958)
T KOG0391|consen 1075 GPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGREL 1154 (1958)
T ss_pred CCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhh
Confidence 000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005980 468 -------------------------------------------------------------------------------- 467 (666)
Q Consensus 468 -------------------------------------------------------------------------------- 467 (666)
T Consensus 1155 l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p 1234 (1958)
T KOG0391|consen 1155 LRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAP 1234 (1958)
T ss_pred hhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhcc
Confidence
Q ss_pred -----------------------ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHH
Q 005980 468 -----------------------AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPAS 524 (666)
Q Consensus 468 -----------------------~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~ 524 (666)
..+|++.|.=+|.++...|+++|||+|...|+|.|+.+|.-+|+-|+++||+|+.++
T Consensus 1235 ~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEq 1314 (1958)
T KOG0391|consen 1235 YFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQ 1314 (1958)
T ss_pred ccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHH
Confidence 006999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 005980 525 RQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 604 (666)
Q Consensus 525 R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~ 604 (666)
|+.++++||.+..+++|++||++||+||||++|++|||||..|||....||-+|+|||||+++|+||+||++.||||+|+
T Consensus 1315 RQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1315 RQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred HHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCc
Q 005980 605 DVVRSKLENLGQVLDGHE 622 (666)
Q Consensus 605 ~~~~~K~~~~~~~l~~~~ 622 (666)
...+.|..+-+-++.|++
T Consensus 1395 kkanqKr~L~evaiqggd 1412 (1958)
T KOG0391|consen 1395 KKANQKRMLDEVAIQGGD 1412 (1958)
T ss_pred hhhhHHHHHHHHhhccCC
Confidence 999999776666777754
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-69 Score=561.53 Aligned_cols=451 Identities=27% Similarity=0.448 Sum_probs=369.1
Q ss_pred ccCCChhhhhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCCcchHHHHHHH
Q 005980 163 YDQIPAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 163 ~~~~p~~~~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~sl~~qW~~e~ 235 (666)
..+.|.-+..+|..||..|++|+. .+|-++|||||||+|||+|+|++++++.+ .+|+|||+|+|.+.+|+.||
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEi 636 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEI 636 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHH
Confidence 346788899999999999999986 56888899999999999999999998744 67999999999999999999
Q ss_pred HHHhcCCCCcEEEEEecCCCCCcccee-EEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhH
Q 005980 236 QQWLNIPPSEIVVVLSQLGGSNRSGFT-IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s 314 (666)
.+|++ ...++.+.+ +...++... .|....-..-...++|+||||+++..+...|.+..|..+|+|||+.||+..|
T Consensus 637 srFlP--~~k~lpywG--s~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS 712 (1185)
T KOG0388|consen 637 SRFLP--SFKVLPYWG--SPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSS 712 (1185)
T ss_pred HHhCc--cceeecCcC--ChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhh
Confidence 99984 433333222 112221111 1111111222345679999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCccccc----ccCCCCHHHHHHHhh
Q 005980 315 KRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI----YQGASNHEELHNLMK 390 (666)
Q Consensus 315 ~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~----~~~~~~~~~l~~ll~ 390 (666)
.+++.++.+ +|+.|++|||||++|+..|||.+|+|+.|.+|.+..+|.++|.+.+.... ......+..|+.+++
T Consensus 713 ~RWKtLLsF--~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILK 790 (1185)
T KOG0388|consen 713 SRWKTLLSF--KCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILK 790 (1185)
T ss_pred hHHHHHhhh--hccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHh
Confidence 999999998 99999999999999999999999999999999999999999998764432 222334567888888
Q ss_pred hhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHH------HhHHHhcCCHHHHhhc------------
Q 005980 391 ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV------KGKIKACKSEEEVQSL------------ 452 (666)
Q Consensus 391 ~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------------ 452 (666)
++|+||.|++|..+|..+.+..|+|+++..|...|+.+-..+..+ ....+.|.++..+...
T Consensus 791 -PFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~ 869 (1185)
T KOG0388|consen 791 -PFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD 869 (1185)
T ss_pred -HHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEccc
Confidence 799999999999999999999999999999998888766554321 1112222222111000
Q ss_pred -----------------------------hhh------------------------------------------------
Q 005980 453 -----------------------------KFT------------------------------------------------ 455 (666)
Q Consensus 453 -----------------------------~~~------------------------------------------------ 455 (666)
.+.
T Consensus 870 nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kav 949 (1185)
T KOG0388|consen 870 NLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAV 949 (1185)
T ss_pred CHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHH
Confidence 000
Q ss_pred --------------HHHHHH--------hhhc------------------------------------------CCcccc
Q 005980 456 --------------EKNLIN--------KIYT------------------------------------------DSAEAK 471 (666)
Q Consensus 456 --------------~~~~~~--------~~~~------------------------------------------~~~~~K 471 (666)
....+. ..|. .+.++|
T Consensus 950 tr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgK 1029 (1185)
T KOG0388|consen 950 TRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGK 1029 (1185)
T ss_pred HHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccc
Confidence 000000 0000 012479
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccc
Q 005980 472 IPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 472 l~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~G 551 (666)
+..|-++|..+...|+++|+|.|.+.|++.|+++|.-+|+.|++++|+....+|..++.+||. +++.|||+||+|||.|
T Consensus 1030 L~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred eeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 6689999999999999
Q ss_pred cCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 005980 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621 (666)
Q Consensus 552 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~ 621 (666)
|||++|++|||||..|||....||++|+||.||+++|+||+|++.|||||+|.++..+|-.....++.|.
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999988888888874
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-65 Score=557.65 Aligned_cols=450 Identities=26% Similarity=0.338 Sum_probs=354.8
Q ss_pred ChhhhhcCchHHHHHHHHHHH---------cCCCeeeecCCCCcHHHHHHHHHHhcCCC--------CcEEEEeCCcchH
Q 005980 167 PAHIESKLLPFQRDGVRFALQ---------HGGRILLADEMGLGKTIQAIAVATCFRDV--------WPVLILTPSSLRL 229 (666)
Q Consensus 167 p~~~~~~L~p~Q~~~v~~~~~---------~~~~~iLad~~GlGKTi~ala~~~~~~~~--------~~~LIv~P~sl~~ 229 (666)
.|.+...|||||++|++|+++ ..+|||+||+||+|||++.|+++..+.+. .+.|||||++|+.
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~ 311 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVN 311 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHH
Confidence 356778999999999999974 35689999999999999999999877442 5689999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCCccc-eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccc
Q 005980 230 HWAAMIQQWLNIPPSEIVVVLSQLGGSNRSG-FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHF 308 (666)
Q Consensus 230 qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~ 308 (666)
+|++||.+|.+........+.+.... .+.. ..+. ..........|.|.||+++......+....++++|+||+|+
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil---~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSIL---FLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccch-hhhhhHHHH---HhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCC
Confidence 99999999986322222222211111 0000 0000 00011123347799999999999999999999999999999
Q ss_pred cCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCC-------
Q 005980 309 LKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASN------- 381 (666)
Q Consensus 309 ~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~------- 381 (666)
.||..+..++++..+ +.++|++|||||+||++.|+|++|+|++|+++++...|...|..+...+...+.++
T Consensus 388 lkN~~s~~~kaL~~l--~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~ 465 (776)
T KOG0390|consen 388 LKNSDSLTLKALSSL--KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREE 465 (776)
T ss_pred ccchhhHHHHHHHhc--CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHH
Confidence 999999999999999 99999999999999999999999999999999999999999988765544322221
Q ss_pred -HHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHH----------HHHHhHHHhcCCHHHHh
Q 005980 382 -HEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL----------EVVKGKIKACKSEEEVQ 450 (666)
Q Consensus 382 -~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 450 (666)
..+|..+.. .+++||+-+.....||.+.+++|+|.+++.|...|..+.... ..+...-+.|.++..+.
T Consensus 466 rl~eL~~~t~-~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 466 RLQELRELTN-KFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHH-hheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 445777776 799999998899999999999999999999999998888752 11111223344443332
Q ss_pred hchhhH--------HHHHH-----hhh-cCCccccHHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHHHHhCCceEEE
Q 005980 451 SLKFTE--------KNLIN-----KIY-TDSAEAKIPAVLDYLETVIEA-GCKFLIFAHHQPMLDAIHQLFLKKKVHCIR 515 (666)
Q Consensus 451 ~~~~~~--------~~~~~-----~~~-~~~~~~Kl~~l~~~l~~~~~~-g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~ 515 (666)
...... ..... ... ...-+.|+..|+.++....+. -.++++.++++.+++.++..+.-+|+.+++
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~r 624 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLR 624 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEE
Confidence 100000 00000 001 112256777787777554333 457778888999999999999999999999
Q ss_pred EECCCCHHHHHHHHHHhcCCCCc-eEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEE
Q 005980 516 IDGGTPPASRQALVTEFQEKDDV-KAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 516 i~G~~~~~~R~~~i~~F~~~~~~-~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
+||+++..+|+.+|+.||+.++. +|||+|++|||+||||.+|++||++|++|||+...||++||+|.||+++|+||+|+
T Consensus 625 LdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 625 LDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred EcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEee
Confidence 99999999999999999998775 99999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 595 ANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 595 ~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
+.||+||+||+++..|..+-..+++..+.
T Consensus 705 atGtiEEk~~qrq~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 705 ATGTIEEKIYQRQTHKEGLSSMVFDEEED 733 (776)
T ss_pred cCCCchHHHHHHHHHhhhhhheEEecccc
Confidence 99999999999999998877777776543
No 11
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-63 Score=499.01 Aligned_cols=446 Identities=28% Similarity=0.454 Sum_probs=338.5
Q ss_pred cCCChhhhhcCchHHHHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHh
Q 005980 164 DQIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 164 ~~~p~~~~~~L~p~Q~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
.+.|..+...|.|||++++.|+..+ -+|+|||||||+|||+|+|+++..-....|+|||||...+.||..||.+++
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T 254 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHT 254 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhc
Confidence 3578888889999999999999754 346699999999999999999887667889999999999999999999998
Q ss_pred cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH-----------------HHHhcCCccEEE
Q 005980 240 NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ-----------------NILMSSNFKIVI 302 (666)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~-----------------~~l~~~~~~~vI 302 (666)
. .+.. ++.. +|..+. .......+.+|++|||..+.... +.+....|..||
T Consensus 255 ~-gslk--v~~Y--hG~~R~--------~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiI 321 (791)
T KOG1002|consen 255 S-GSLK--VYIY--HGAKRD--------KNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRII 321 (791)
T ss_pred c-CceE--EEEE--eccccc--------CCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeee
Confidence 5 2222 2222 222221 11122345679999999886432 246677899999
Q ss_pred EcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHH-----------HHhh------
Q 005980 303 ADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVH-----------EYGN------ 365 (666)
Q Consensus 303 iDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~-----------~f~~------ 365 (666)
+||||++|+..+...+++..+ ++.|||+|||||++|+..|||++++||..++|..+- .|..
T Consensus 322 lDEAH~IK~R~snTArAV~~L--~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~ 399 (791)
T KOG1002|consen 322 LDEAHNIKDRQSNTARAVFAL--ETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDH 399 (791)
T ss_pred hhhhcccccccccHHHHHHhh--HhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCc
Confidence 999999999999999999998 999999999999999999999999999988764311 0100
Q ss_pred -------hhh-------cC-cccccc-cCCCCHHHHHHHhhhhhhhhehhhhhhh--cCCcccEEEEEecCCHHHHHHHH
Q 005980 366 -------RYC-------KG-GVFGIY-QGASNHEELHNLMKATVMIRRLKKDVLA--QLPVKRRQQVFLDVAEKDMRQIY 427 (666)
Q Consensus 366 -------~~~-------~~-~~~~~~-~~~~~~~~l~~ll~~~~~lrr~k~~v~~--~lp~~~~~~v~~~~~~~~~~~~~ 427 (666)
.+| .+ ..+|.. .|.......+.+++ .+|+||+|-+-.. .|||+....-.--++.++...|+
T Consensus 400 c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk-~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~Ye 478 (791)
T KOG1002|consen 400 CSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLK-NIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYE 478 (791)
T ss_pred ccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHH-HHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHH
Confidence 000 01 112211 22233345666776 6999999854322 67887655554456666666676
Q ss_pred HHHHHHHH-----------------H----HhHHHh---------------------------cCCHHH--Hh-h-----
Q 005980 428 ALFRELEV-----------------V----KGKIKA---------------------------CKSEEE--VQ-S----- 451 (666)
Q Consensus 428 ~~~~~~~~-----------------~----~~~~~~---------------------------~~~~~~--~~-~----- 451 (666)
.++..... + ....+. |..+.. +. +
T Consensus 479 SLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~F 558 (791)
T KOG1002|consen 479 SLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKF 558 (791)
T ss_pred HHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHH
Confidence 66544211 0 000000 000000 00 0
Q ss_pred --c---------------------------------------hhhHHHHHHhhhcC--CccccHHHHHHHHHHHHHcC--
Q 005980 452 --L---------------------------------------KFTEKNLINKIYTD--SAEAKIPAVLDYLETVIEAG-- 486 (666)
Q Consensus 452 --~---------------------------------------~~~~~~~~~~~~~~--~~~~Kl~~l~~~l~~~~~~g-- 486 (666)
+ .+....+++.+-.+ ..+.|+++|.+.|.-+.++.
T Consensus 559 CrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t 638 (791)
T KOG1002|consen 559 CRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRT 638 (791)
T ss_pred HHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccc
Confidence 0 00001111111111 24679999999998887664
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
-|.|||+||+.++|.|.-.|.+.|+.++.+.|+|++..|...++.|.++.+|+|||+|.+|||+.|||+.|++|+++|||
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcccc
Q 005980 567 WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSL 625 (666)
Q Consensus 567 wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~~~ 625 (666)
|||+...|+.+|+|||||.++|.|.+|+.++|||++|.+++.+|.+++.+.+++++..+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai 777 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAI 777 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654
No 12
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.2e-62 Score=511.75 Aligned_cols=437 Identities=26% Similarity=0.374 Sum_probs=348.6
Q ss_pred CCChhhhhcCchHHHHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcC-----------CCCcEEEEeCCcchH
Q 005980 165 QIPAHIESKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFR-----------DVWPVLILTPSSLRL 229 (666)
Q Consensus 165 ~~p~~~~~~L~p~Q~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~-----------~~~~~LIv~P~sl~~ 229 (666)
.-|.++...|+|||+.|+.||+.+ +.|+||||+||+|||++.|+++..-+ ...++|||||.+|+.
T Consensus 317 e~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~ 396 (901)
T KOG4439|consen 317 ETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIH 396 (901)
T ss_pred CCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHH
Confidence 467888999999999999999854 55779999999999999999887542 123699999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHH----------HHHHHhcCCcc
Q 005980 230 HWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLK----------LQNILMSSNFK 299 (666)
Q Consensus 230 qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~----------~~~~l~~~~~~ 299 (666)
||..|+++.+. ...+.|++. +|.++.. .........+|+||||+.+.. ....+..+.|.
T Consensus 397 qW~~Ev~~rl~--~n~LsV~~~--HG~n~r~-------i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~ 465 (901)
T KOG4439|consen 397 QWEAEVARRLE--QNALSVYLY--HGPNKRE-------ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWS 465 (901)
T ss_pred HHHHHHHHHHh--hcceEEEEe--cCCcccc-------CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHH
Confidence 99999999984 223333332 3333211 122333456799999999876 22356777899
Q ss_pred EEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCC
Q 005980 300 IVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGA 379 (666)
Q Consensus 300 ~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~ 379 (666)
.||+||||.+||..++.+.+++.+ .+..||+|||||++|+..|+|+++.||+..+|+++..|+.....+...+
T Consensus 466 RVILDEAH~IrN~~tq~S~AVC~L--~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----- 538 (901)
T KOG4439|consen 466 RVILDEAHNIRNSNTQCSKAVCKL--SAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----- 538 (901)
T ss_pred HhhhhhhhhhcccchhHHHHHHHH--hhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----
Confidence 999999999999999999999999 8999999999999999999999999999999999999988765443222
Q ss_pred CCHHHHHHHhhhhhhhhehhhhhhh-----cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHH-----------------
Q 005980 380 SNHEELHNLMKATVMIRRLKKDVLA-----QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVK----------------- 437 (666)
Q Consensus 380 ~~~~~l~~ll~~~~~lrr~k~~v~~-----~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------- 437 (666)
.....++....|+||+|...-. .||.+......++++..++..|.-+......+.
T Consensus 539 ---~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~ 615 (901)
T KOG4439|consen 539 ---ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQ 615 (901)
T ss_pred ---hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcc
Confidence 2334444458999999988765 899999999999999999888865443322211
Q ss_pred ----------------------------------------hHHHhcCCHHHHh---------hch--------hhHHH--
Q 005980 438 ----------------------------------------GKIKACKSEEEVQ---------SLK--------FTEKN-- 458 (666)
Q Consensus 438 ----------------------------------------~~~~~~~~~~~~~---------~~~--------~~~~~-- 458 (666)
+..+.|++..... ... .....
T Consensus 616 s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~ 695 (901)
T KOG4439|consen 616 SRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLA 695 (901)
T ss_pred ccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHH
Confidence 1112222221000 000 00000
Q ss_pred HHHhh---------------------h-cCCccccHHHHHHHHHHH-HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEE
Q 005980 459 LINKI---------------------Y-TDSAEAKIPAVLDYLETV-IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIR 515 (666)
Q Consensus 459 ~~~~~---------------------~-~~~~~~Kl~~l~~~l~~~-~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~ 515 (666)
.+.+. + ..-.+.|+..+++.++.. ....+|++|.++++.+++.+..++.+.|..|..
T Consensus 696 el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~s 775 (901)
T KOG4439|consen 696 ELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTS 775 (901)
T ss_pred hhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeee
Confidence 00000 0 011357999999999887 456889999999999999999999999999999
Q ss_pred EECCCCHHHHHHHHHHhcCCCC-ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEE
Q 005980 516 IDGGTPPASRQALVTEFQEKDD-VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 516 i~G~~~~~~R~~~i~~F~~~~~-~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
++|+...++|+.+++.|+...+ .+|+|+|..|||+||||.+|+|+|++|++|||+.+.||-+|++|+||+++|+||+|+
T Consensus 776 i~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~ 855 (901)
T KOG4439|consen 776 ITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLM 855 (901)
T ss_pred ecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEE
Confidence 9999999999999999998765 799999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhhhhcCCc
Q 005980 595 ANDTVDDIVWDVVRSKLENLGQVLDGHE 622 (666)
Q Consensus 595 ~~~tiee~i~~~~~~K~~~~~~~l~~~~ 622 (666)
+.||+|++|..++..|++++..++.|..
T Consensus 856 ~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 856 CKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999753
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=7.7e-61 Score=508.82 Aligned_cols=449 Identities=24% Similarity=0.360 Sum_probs=351.4
Q ss_pred cCCChhhhhcCchHHHHHHHHHHHc------------CCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCCc
Q 005980 164 DQIPAHIESKLLPFQRDGVRFALQH------------GGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPSS 226 (666)
Q Consensus 164 ~~~p~~~~~~L~p~Q~~~v~~~~~~------------~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~s 226 (666)
.++|..+-..|.|||..||+||+.. |-|||||+=||||||+|.+++++... ...++|||||.+
T Consensus 659 VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlN 738 (1567)
T KOG1015|consen 659 VQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLN 738 (1567)
T ss_pred hhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchH
Confidence 3567788889999999999999743 77999999999999999999887542 367899999999
Q ss_pred chHHHHHHHHHHhcC-CCC-cEEEEEecCCCCCc--cceeEEecCCCCCCCCCCcEEEEeHHHHHHH-------------
Q 005980 227 LRLHWAAMIQQWLNI-PPS-EIVVVLSQLGGSNR--SGFTIVSSNTKRNIPLDGLFNIISYDVVLKL------------- 289 (666)
Q Consensus 227 l~~qW~~e~~~~~~~-~~~-~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~------------- 289 (666)
++.||..||.+|..- ... .+-|.. .+.-.+ .++..+ ..+..++.|.|+-|++++..
T Consensus 739 t~~NW~~EFekWm~~~e~~~~leV~e--L~~vkr~e~R~~~L-----~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 739 TALNWMNEFEKWMEGLEDDEKLEVSE--LATVKRPEERSYML-----QRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred HHHHHHHHHHHhcccccccccceeeh--hhhccChHHHHHHH-----HHHHhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 999999999999852 111 111111 111111 111100 12334567899999998643
Q ss_pred --HHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhh
Q 005980 290 --QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRY 367 (666)
Q Consensus 290 --~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~ 367 (666)
...+....+|+|||||+|-+||..+..++++..+ ++++||+|||||++|++.|+|++++|+.|+++++..+|.+||
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~i--rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRF 889 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSI--RTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRF 889 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHH--HhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhh
Confidence 1234456899999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCCHH---------HHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHH------
Q 005980 368 CKGGVFGIYQGASNHE---------ELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRE------ 432 (666)
Q Consensus 368 ~~~~~~~~~~~~~~~~---------~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~------ 432 (666)
.+++..|++.+.+..+ -|+.+|.+ +.-|+--.-+...|||+.+.++.+.+++-|...|...+.-
T Consensus 890 vNpI~nGq~~dST~~DVr~Mk~RsHILye~Lkg-cVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~ 968 (1567)
T KOG1015|consen 890 VNPIQNGQCADSTMVDVRVMKKRSHILYEMLKG-CVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGN 968 (1567)
T ss_pred cCccccCccCCCcHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCC
Confidence 9999999887766443 46666663 5556555666779999999999999999999988766551
Q ss_pred ---------------HHHHHhHHH----------------------------hcCCH-----------------------
Q 005980 433 ---------------LEVVKGKIK----------------------------ACKSE----------------------- 446 (666)
Q Consensus 433 ---------------~~~~~~~~~----------------------------~~~~~----------------------- 446 (666)
+..+..... .+.+.
T Consensus 969 d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~D 1048 (1567)
T KOG1015|consen 969 DSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKD 1048 (1567)
T ss_pred ccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccc
Confidence 111110000 00000
Q ss_pred HHHhh----c-----hhh---------------------HHHHHHh------------------hh------cCCccccH
Q 005980 447 EEVQS----L-----KFT---------------------EKNLINK------------------IY------TDSAEAKI 472 (666)
Q Consensus 447 ~~~~~----~-----~~~---------------------~~~~~~~------------------~~------~~~~~~Kl 472 (666)
+.... . ... ...++.. +. ....++|+
T Consensus 1049 esss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKm 1128 (1567)
T KOG1015|consen 1049 ESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKM 1128 (1567)
T ss_pred ccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcce
Confidence 00000 0 000 0000000 00 01235799
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----------------------CCceEEEEECCCCHHHHHHHHH
Q 005980 473 PAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----------------------KKVHCIRIDGGTPPASRQALVT 530 (666)
Q Consensus 473 ~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----------------------~g~~~~~i~G~~~~~~R~~~i~ 530 (666)
-.|+++|....+-|.|+|||+|+...++.|+.+|.- .|..|.+|+|++.+.+|+.+++
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 999999999988899999999999999999999953 3668999999999999999999
Q ss_pred HhcCCCC--ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 531 EFQEKDD--VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 531 ~F~~~~~--~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
.||+..+ .+.+||||+||+.||||.+|+.||++|..|||....|+|-|++|.||+++|+||+|++.||+||+||.++-
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQV 1288 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQV 1288 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHH
Confidence 9999876 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCc
Q 005980 609 SKLENLGQVLDGHE 622 (666)
Q Consensus 609 ~K~~~~~~~l~~~~ 622 (666)
.|..+.-.|+|.+.
T Consensus 1289 TKqsls~RVVDeqQ 1302 (1567)
T KOG1015|consen 1289 TKQSLSFRVVDEQQ 1302 (1567)
T ss_pred hHhhhhhhhhhHHH
Confidence 99999988888753
No 14
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.7e-62 Score=525.53 Aligned_cols=444 Identities=27% Similarity=0.402 Sum_probs=357.7
Q ss_pred cCCChhh-hhcCchHHHHHHHHHHH---cCCCeeeecCCCCcHHHHHHHHHHhcC----CCCcEEEEeCCcchHHHHHHH
Q 005980 164 DQIPAHI-ESKLLPFQRDGVRFALQ---HGGRILLADEMGLGKTIQAIAVATCFR----DVWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 164 ~~~p~~~-~~~L~p~Q~~~v~~~~~---~~~~~iLad~~GlGKTi~ala~~~~~~----~~~~~LIv~P~sl~~qW~~e~ 235 (666)
...|..+ .++|++||+.|++||+. ++-++|||||||+|||+|+|+++.++. ..+|.|||||.+.+.+|..||
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef 463 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEF 463 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhc
Confidence 3455554 46899999999999974 455679999999999999999999873 478999999999999999999
Q ss_pred HHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHH
Q 005980 236 QQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAK 315 (666)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~ 315 (666)
.+|.+ .+..+.+.+....+..+. .......+.|.+|||+-+.+....|.+++|..+||||.|++||..++
T Consensus 464 ~kWaP----Sv~~i~YkGtp~~R~~l~------~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~K 533 (1157)
T KOG0386|consen 464 PKWAP----SVQKIQYKGTPQQRSGLT------KQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICK 533 (1157)
T ss_pred ccccc----ceeeeeeeCCHHHHhhHH------HHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhH
Confidence 99973 222333222222222221 11122466799999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCc-ccccccCC------CCHHHHHHH
Q 005980 316 RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGG-VFGIYQGA------SNHEELHNL 388 (666)
Q Consensus 316 ~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~-~~~~~~~~------~~~~~l~~l 388 (666)
.+..+.... .+++|++|||||++|++.|||++|+|+-|.+|.+...|..+|..+- ..|....- -....|+.+
T Consensus 534 Lt~~L~t~y-~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkV 612 (1157)
T KOG0386|consen 534 LTDTLNTHY-RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKV 612 (1157)
T ss_pred HHHHhhccc-cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHh
Confidence 888777422 7899999999999999999999999999999999999999887662 12211111 123478888
Q ss_pred hhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHH-----------------HhHHHhcCCHHHHhh
Q 005980 389 MKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV-----------------KGKIKACKSEEEVQS 451 (666)
Q Consensus 389 l~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 451 (666)
++ +|++||+|++|-.+||.+.+.++-|.++.-|...|..+...-... ....+.|.++-....
T Consensus 613 LR-PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ 691 (1157)
T KOG0386|consen 613 LR-PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN 691 (1157)
T ss_pred hh-HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh
Confidence 88 799999999999999999999999999999988877655321111 111223333322211
Q ss_pred c--hhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHH
Q 005980 452 L--KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALV 529 (666)
Q Consensus 452 ~--~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i 529 (666)
. .+........++ ..++|+..+-.+|..+...|++|+.|++.+..++.++++|.-++++|.++||+|..++|..++
T Consensus 692 ve~~~~~~~~~~dL~--R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll 769 (1157)
T KOG0386|consen 692 VENSYTLHYDIKDLV--RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLL 769 (1157)
T ss_pred hccccccccChhHHH--HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHH
Confidence 0 000000001112 246799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC-CceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 530 TEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 530 ~~F~~~~-~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
+.|+..+ .+++||+|++|||.|+||+.|++||++|..|||....||.+|+|||||++.|.|+++++.+++||+|+....
T Consensus 770 ~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~ 849 (1157)
T KOG0386|consen 770 EIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAF 849 (1157)
T ss_pred HHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHH
Confidence 9999865 488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCC
Q 005980 609 SKLENLGQVLDGH 621 (666)
Q Consensus 609 ~K~~~~~~~l~~~ 621 (666)
.|++..+.++..+
T Consensus 850 ~Kl~~d~kviqag 862 (1157)
T KOG0386|consen 850 YKLDVDGKVIQAG 862 (1157)
T ss_pred HhcCchHhhhhcc
Confidence 9998887776553
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=6.3e-59 Score=528.65 Aligned_cols=457 Identities=19% Similarity=0.244 Sum_probs=338.9
Q ss_pred hhhcCchHHHHHHHHHHH-cCCCeeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCCcchHHHHHHHHHHhcCCCCc
Q 005980 170 IESKLLPFQRDGVRFALQ-HGGRILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~-~~~~~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~ 245 (666)
....|.|||...+..++. ..+|+|||||||+|||++|++++..+ ...+|+|||||++|+.||..|+.++++++.
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~l~~-- 226 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFNLRF-- 226 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhCCCe--
Confidence 345799999999988764 46799999999999999999998865 235799999999999999999999887542
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH---HHHhcCCccEEEEcCccccCC---hhHHHHHH
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ---NILMSSNFKIVIADESHFLKN---AQAKRTAA 319 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~---~~l~~~~~~~vIiDEaH~~kn---~~s~~~~~ 319 (666)
.++ ....... . .. ..........++|+||+.+.+.. ..+....|++||+||||++++ ..++.++.
T Consensus 227 -~i~-~~~~~~~---~---~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~ 297 (956)
T PRK04914 227 -SLF-DEERYAE---A---QH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQV 297 (956)
T ss_pred -EEE-cCcchhh---h---cc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHH
Confidence 121 1110000 0 00 01122234668999999998643 456677999999999999995 34567888
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCccc---------ccccCC-----------
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVF---------GIYQGA----------- 379 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~---------~~~~~~----------- 379 (666)
+..+..+++++++|||||++|++.|+|++|++|+|+.|+++..|....+..... +.....
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 888877889999999999999999999999999999999999998766532111 000000
Q ss_pred -CCH-------------------HHHHHHhh----hhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHH
Q 005980 380 -SNH-------------------EELHNLMK----ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEV 435 (666)
Q Consensus 380 -~~~-------------------~~l~~ll~----~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 435 (666)
... +-+..++. ..+|+|+++.+|. .+|.+..+.+.++++++....+... .
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~---~-- 451 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVS---L-- 451 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHh---H--
Confidence 000 01111221 2578899999985 7899999999998876543322210 0
Q ss_pred HHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHH-HhCCceEE
Q 005980 436 VKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLF-LKKKVHCI 514 (666)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L-~~~g~~~~ 514 (666)
......+..++.+... +. .... ....++|++.|++++... .++|+||||++..+++.|.+.| ...|+++.
T Consensus 452 -~~~~~~~l~pe~~~~~-~~---~~~~--~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~ 522 (956)
T PRK04914 452 -EARARDMLYPEQIYQE-FE---DNAT--WWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAA 522 (956)
T ss_pred -HHHHHhhcCHHHHHHH-Hh---hhhh--ccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEE
Confidence 1111112222111100 00 0000 123457999999999874 5899999999999999999999 46699999
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEE
Q 005980 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 515 ~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
.+||+++..+|.++++.|+++++...+|+||++||+|+|++.|++||+||+||||..++||+||+||+||+++|.||.++
T Consensus 523 ~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 523 VFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred EEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999999999999999998653245678889999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHhhhhcCCccccccccccccCChhhH---hhHHHHHHhccCC
Q 005980 595 ANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQ---KTLDSFLKRCNNV 652 (666)
Q Consensus 595 ~~~tiee~i~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 652 (666)
.++|+|+.|++.+.+|+++++..+.+.....+....++...+... ..++++++.+...
T Consensus 603 ~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~li~~~~~~ 663 (956)
T PRK04914 603 LEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGDELIPYLASPDDTDGLDELIAETREQ 663 (956)
T ss_pred CCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999988887766655555555444322 3366666665433
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-52 Score=491.84 Aligned_cols=444 Identities=29% Similarity=0.426 Sum_probs=352.6
Q ss_pred hhhhhcCchHHHHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcC---C--CCcEEEEeCCcchHHHHHHHHHH
Q 005980 168 AHIESKLLPFQRDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFR---D--VWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 168 ~~~~~~L~p~Q~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~---~--~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
..+...|+|||.+|++|+.. .+.++++||+||+|||+|+++++.... . .+|.|||||.+++.+|.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 56668899999999999762 366789999999999999999987531 1 46999999999999999999999
Q ss_pred hcCCCCc-EEEEEecCCCCC--cccee-EEecCCCCCCCCCCcEEEEeHHHHHH---HHHHHhcCCccEEEEcCccccCC
Q 005980 239 LNIPPSE-IVVVLSQLGGSN--RSGFT-IVSSNTKRNIPLDGLFNIISYDVVLK---LQNILMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 239 ~~~~~~~-i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~v~I~sy~~l~~---~~~~l~~~~~~~vIiDEaH~~kn 311 (666)
.+ ... +.+..+...... ..... ...... .....++++||+.+.. ....+....|+.+|+||+|++||
T Consensus 413 ~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 413 AP--DLRLVLVYHGEKSELDKKREALRDLLKLHL----VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred Cc--cccceeeeeCCcccccHHHHHHHHHhhhcc----cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 84 222 222211110000 11100 000000 1225688999999999 88889999999999999999999
Q ss_pred hhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHH-HhCCCCCC-CHHHHhhhhhcCcccccccC-----CCCHHH
Q 005980 312 AQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLE-ALYPDVYK-NVHEYGNRYCKGGVFGIYQG-----ASNHEE 384 (666)
Q Consensus 312 ~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~-~l~p~~~~-~~~~f~~~~~~~~~~~~~~~-----~~~~~~ 384 (666)
..+..++++..+ ++.++++|||||++|++.|||++++ |+.|++++ +...|...|+.+.......+ ......
T Consensus 487 ~~s~~~~~l~~~--~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (866)
T COG0553 487 DQSSEGKALQFL--KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIEL 564 (866)
T ss_pred hhhHHHHHHHHH--hhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHH
Confidence 999999999966 8999999999999999999999999 99999999 66999999988754443221 122233
Q ss_pred HHHHhhhhhhhhehhhh--hhhcCCcccEEEEEecCCHHHHHHHHHHHH---HHHHHHhHH-HhcCC-------HHHHhh
Q 005980 385 LHNLMKATVMIRRLKKD--VLAQLPVKRRQQVFLDVAEKDMRQIYALFR---ELEVVKGKI-KACKS-------EEEVQS 451 (666)
Q Consensus 385 l~~ll~~~~~lrr~k~~--v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~-------~~~~~~ 451 (666)
|+.++. ++++||++.+ +...||++.+..++|.+++.+...|..... ......... ..... ...+..
T Consensus 565 l~~~i~-~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 643 (866)
T COG0553 565 LRKLLS-PFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILA 643 (866)
T ss_pred HHHHHH-HHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Confidence 667776 6899999999 999999999999999999999988888777 333222221 11110 000000
Q ss_pred chhhHHHHHHhhhc-----------------------------CCcc-ccHHHHHHHH-HHHHHcCC--EEEEEeccHHH
Q 005980 452 LKFTEKNLINKIYT-----------------------------DSAE-AKIPAVLDYL-ETVIEAGC--KFLIFAHHQPM 498 (666)
Q Consensus 452 ~~~~~~~~~~~~~~-----------------------------~~~~-~Kl~~l~~~l-~~~~~~g~--KvlVF~~~~~~ 498 (666)
.....+.+++.... ...+ .|+..+.+++ ......|+ |++||++++.+
T Consensus 644 ~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~ 723 (866)
T COG0553 644 LLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPV 723 (866)
T ss_pred HHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHH
Confidence 00000011110000 0122 7999999999 78888999 99999999999
Q ss_pred HHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhh
Q 005980 499 LDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDR 578 (666)
Q Consensus 499 ~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR 578 (666)
++.+...|...++.+.+++|+++..+|+.++++|+++++..++++|++|||.|+||+.|++||++|++|||....||++|
T Consensus 724 l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dR 803 (866)
T COG0553 724 LDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHH
Confidence 99999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005980 579 AHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620 (666)
Q Consensus 579 ~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~ 620 (666)
+||+||+++|.||+++++||+||+|+.++..|..+...++++
T Consensus 804 a~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 804 AHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999986
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-51 Score=429.10 Aligned_cols=460 Identities=23% Similarity=0.357 Sum_probs=350.8
Q ss_pred CChhhhhcCchHHHHHHHHHHHc------------CCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHH
Q 005980 166 IPAHIESKLLPFQRDGVRFALQH------------GGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLH 230 (666)
Q Consensus 166 ~p~~~~~~L~p~Q~~~v~~~~~~------------~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~q 230 (666)
+-+.+...+.|||+-||+|++.+ |.|||||+.||||||+|.++++..+. ..+.+|+|+|-..+.+
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQN 326 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQN 326 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHH
Confidence 34567788999999999999754 88999999999999999999887664 3678999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCC-----------CCCCCCCcEEEEeHHHHHHHHH--------
Q 005980 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTK-----------RNIPLDGLFNIISYDVVLKLQN-------- 291 (666)
Q Consensus 231 W~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~I~sy~~l~~~~~-------- 291 (666)
|..|+..|++--+ .-.+.....|.++-.+.. ..+..++.|.++-|++++...-
T Consensus 327 WlsEfnmWiP~y~--------sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~gr 398 (1387)
T KOG1016|consen 327 WLSEFNMWIPKYF--------SDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGR 398 (1387)
T ss_pred HHHHhhhhcCCCc--------ccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCC
Confidence 9999999985200 111222223333222111 1233466788999999864321
Q ss_pred ------------------------------HHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCC
Q 005980 292 ------------------------------ILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSR 341 (666)
Q Consensus 292 ------------------------------~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~ 341 (666)
.|.....|+|||||.|+|||..+..+.++..+ ++++|+.|||-|++|+
T Consensus 399 pkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~I--rtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 399 PKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAI--RTRRRIVLTGYPLQNN 476 (1387)
T ss_pred ccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHh--hhceeEEEeccccccc
Confidence 13344689999999999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCC---------HHHHHHHhhhhhhhhehhhhhhhcCCcccEE
Q 005980 342 PIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASN---------HEELHNLMKATVMIRRLKKDVLAQLPVKRRQ 412 (666)
Q Consensus 342 ~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~---------~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~ 412 (666)
+.|+|++++|+.|++++...+|.+.|.+++..|+..+.+. ..-|+.++.+ |.-||...-+...||.+.+.
T Consensus 477 LlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~G-FVQRR~HtvLk~~LP~k~Ey 555 (1387)
T KOG1016|consen 477 LLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKG-FVQRRTHTVLKKILPEKKEY 555 (1387)
T ss_pred hHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHH-HHHhcchhhHhhhcccccce
Confidence 9999999999999999999999999999998887665543 3367788874 77788877777899999999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHH---------------HHhHHHhcCCHHHHhhch------------hhHHHHH---H-
Q 005980 413 QVFLDVAEKDMRQIYALFRELEV---------------VKGKIKACKSEEEVQSLK------------FTEKNLI---N- 461 (666)
Q Consensus 413 ~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~------------~~~~~~~---~- 461 (666)
++.+.++.-|+..|....-.... ..-..+...++..+..+. ..+.... .
T Consensus 556 ViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~ 635 (1387)
T KOG1016|consen 556 VILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQ 635 (1387)
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccccc
Confidence 99999999999888765522111 000011111111111000 0000000 0
Q ss_pred --------------------hh------------------------------------hc---CCccccHHHHHHHHHHH
Q 005980 462 --------------------KI------------------------------------YT---DSAEAKIPAVLDYLETV 482 (666)
Q Consensus 462 --------------------~~------------------------------------~~---~~~~~Kl~~l~~~l~~~ 482 (666)
+. |. ....+|+-.+++++.+-
T Consensus 636 ~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des 715 (1387)
T KOG1016|consen 636 QSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDES 715 (1387)
T ss_pred CCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccc
Confidence 00 00 00112333334444444
Q ss_pred HHcCCEEEEEeccHHHHHHHHHHHHhC------------------CceEEEEECCCCHHHHHHHHHHhcCCCCce-EEEE
Q 005980 483 IEAGCKFLIFAHHQPMLDAIHQLFLKK------------------KVHCIRIDGGTPPASRQALVTEFQEKDDVK-AAVL 543 (666)
Q Consensus 483 ~~~g~KvlVF~~~~~~~~~l~~~L~~~------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~-v~L~ 543 (666)
..-|.|+|||++....+++|++.|.++ ...+.+++|.++..+|++++++|++..++. .|++
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfll 795 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLL 795 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeee
Confidence 445789999999999999999999773 235889999999999999999999999876 7899
Q ss_pred eccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 544 SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 544 st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
|++++..||||-.|+.+|++|..|||....||..|++|+||+|+++||+||+.+|.|.+||.++-.|..+-+.++|+...
T Consensus 796 strag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np 875 (1387)
T KOG1016|consen 796 STRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP 875 (1387)
T ss_pred hhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccccccccccCCh
Q 005980 624 SLEVSSSQIRSSP 636 (666)
Q Consensus 624 ~~~~~~~~~~~~~ 636 (666)
...++..++...+
T Consensus 876 ~an~s~Ke~enLl 888 (1387)
T KOG1016|consen 876 DANISQKELENLL 888 (1387)
T ss_pred cccccHHHHHHHh
Confidence 6655544444333
No 18
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-43 Score=386.73 Aligned_cols=347 Identities=18% Similarity=0.227 Sum_probs=254.6
Q ss_pred hhcCchHHHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 171 ESKLLPFQRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
...|||||.+++.++...+ ++++|..+||+|||+++++++..++ .++|||||+ .++.||.++|.+|+.++...+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~--k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~ 330 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVK--KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQIC 330 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEE
Confidence 4689999999999998654 4789999999999999999988764 789999999 5699999999999877665544
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHH----------HHHHHhcCCccEEEEcCccccCChhHHHH
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLK----------LQNILMSSNFKIVIADESHFLKNAQAKRT 317 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~----------~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 317 (666)
...+ ..+ ........|+|+||+++.. ..+.+....|++||+||||++.+.....
T Consensus 331 ~~tg----~~k-----------~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~- 394 (732)
T TIGR00603 331 RFTS----DAK-----------ERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRR- 394 (732)
T ss_pred EEec----Ccc-----------cccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHH-
Confidence 3321 111 1111234588999999853 2334555689999999999997644332
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHH-hCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhh
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEA-LYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIR 396 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~-l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lr 396 (666)
.+..+ .++++|+|||||.+++- .+..+.+ +.|.++.. .+..++.
T Consensus 395 -il~~l--~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye~------------------------~~~eLi~------ 439 (732)
T TIGR00603 395 -VLTIV--QAHCKLGLTATLVREDD--KITDLNFLIGPKLYEA------------------------NWMELQK------ 439 (732)
T ss_pred -HHHhc--CcCcEEEEeecCcccCC--chhhhhhhcCCeeeec------------------------CHHHHHh------
Confidence 23333 68899999999987652 2222222 23332210 0111111
Q ss_pred ehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHH
Q 005980 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476 (666)
Q Consensus 397 r~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~ 476 (666)
.+.|.+.....++|+++++....|...-... + ......+..|+.++.
T Consensus 440 ------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~-----------------------k----~~l~~~np~K~~~~~ 486 (732)
T TIGR00603 440 ------KGFIANVQCAEVWCPMTPEFYREYLRENSRK-----------------------R----MLLYVMNPNKFRACQ 486 (732)
T ss_pred ------CCccccceEEEEEecCCHHHHHHHHHhcchh-----------------------h----hHHhhhChHHHHHHH
Confidence 1466777888899999998755553221100 0 001113457888888
Q ss_pred HHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc
Q 005980 477 DYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA 556 (666)
Q Consensus 477 ~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~ 556 (666)
.++..+...++|+||||++...++.+...| + ...|+|.|+..+|.+++++|+.++.+. +|++++++++|||++.
T Consensus 487 ~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~-vLv~SkVgdeGIDlP~ 560 (732)
T TIGR00603 487 FLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVN-TIFLSKVGDTSIDLPE 560 (732)
T ss_pred HHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCcc-EEEEecccccccCCCC
Confidence 888776568999999999999988888877 2 456999999999999999999775444 4555699999999999
Q ss_pred CCEEEEecCCC-CcchhhhhhhhhhccCCCC-----cEEEEEEEeCCCHHHHHHHHHHH
Q 005980 557 ASTVIFAELSW-TPGDLIQAEDRAHRIGQVS-----SVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 557 a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~-----~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
|++||++++++ ++..++||+||++|.+..+ +..+|.|++++|.|+......++
T Consensus 561 a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~ 619 (732)
T TIGR00603 561 ANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQR 619 (732)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHH
Confidence 99999999875 9999999999999998764 47999999999999888765444
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-44 Score=393.64 Aligned_cols=410 Identities=26% Similarity=0.324 Sum_probs=317.9
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC----------CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCcc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR----------DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRS 259 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~----------~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~ 259 (666)
.|+|+||+||+|||+++++++...+ ..+.+|||||.+++.||..|+.+... .....+.+.++ ..+
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~--~~~l~v~v~~g--r~k- 227 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTE--EDKLSIYVYHG--RTK- 227 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCC--ccceEEEEecc--ccc-
Confidence 3669999999999999999988653 23459999999999999999955442 22333333222 111
Q ss_pred ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCC
Q 005980 260 GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~ 339 (666)
.........|++|||+.+.. ..+....|-.||+||||.++|.+++.++++..+ .+.+||.|||||++
T Consensus 228 ---------d~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L--~a~~RWcLtgtPiq 294 (674)
T KOG1001|consen 228 ---------DKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQL--DAKYRWCLTGTPIQ 294 (674)
T ss_pred ---------ccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheee--ccceeeeecCChhh
Confidence 11122334499999999985 345567999999999999999999999999998 99999999999999
Q ss_pred CChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh-----hhcCCcccEEEE
Q 005980 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV-----LAQLPVKRRQQV 414 (666)
Q Consensus 340 n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v-----~~~lp~~~~~~v 414 (666)
|+..|+|+++.|+.-.++.....|...+..+...+.+ ......++.+++ .+++||+|..- ...||++.....
T Consensus 295 n~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--~~~~k~l~~~L~-~v~lrrtK~~~~~gk~i~~lppk~v~~~ 371 (674)
T KOG1001|consen 295 NNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--KEGVKTLQGILK-KVMLRRTKEMEVDGKPILELPPKTVFVT 371 (674)
T ss_pred hhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--HHHHHHHHHHHH-HHHhcccccccccCccccccCcceeEee
Confidence 9999999999999999999999998887766544443 233456677777 79999998632 347899999999
Q ss_pred EecCCHHHHHHHHHHHHHHHH---------------------HHhHHHhcCCHHHHh---------------------hc
Q 005980 415 FLDVAEKDMRQIYALFRELEV---------------------VKGKIKACKSEEEVQ---------------------SL 452 (666)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~---------------------~~ 452 (666)
.+++..++...|..+...... +......|+++.... .+
T Consensus 372 ~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l 451 (674)
T KOG1001|consen 372 EVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDL 451 (674)
T ss_pred eccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHH
Confidence 999999998888766544211 111122232221100 00
Q ss_pred h----------------------------------------------hhHHHHHHhhh-------cCCccccHHHHHHHH
Q 005980 453 K----------------------------------------------FTEKNLINKIY-------TDSAEAKIPAVLDYL 479 (666)
Q Consensus 453 ~----------------------------------------------~~~~~~~~~~~-------~~~~~~Kl~~l~~~l 479 (666)
. .....+..... ....+.|+.++.++|
T Consensus 452 ~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l 531 (674)
T KOG1001|consen 452 SVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKIL 531 (674)
T ss_pred hhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHH
Confidence 0 00000000000 001245777777777
Q ss_pred HHHHHcCC-EEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 480 ETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 480 ~~~~~~g~-KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
........ |+|||++++.+++.+...|...|+.+.+++|.++...|.+.+..|..++...++++|.+||+.|+||+.|+
T Consensus 532 ~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~ 611 (674)
T KOG1001|consen 532 QAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAAS 611 (674)
T ss_pred hhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhh
Confidence 74332333 99999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~ 620 (666)
+|+..||+|||..++||++|+||+||+++|.|++++..+|+||+|..++++|..+.+.+++.
T Consensus 612 ~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 612 HVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999988777653
No 20
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-36 Score=329.62 Aligned_cols=399 Identities=16% Similarity=0.207 Sum_probs=260.3
Q ss_pred CCccccccccee----eecCcchhHHHHHHHHhcCcceeeccc----cHHHHHHHHhcccCCchhhhccCCChh-hhhcC
Q 005980 104 PKATWNAKERLW----TFPVPFLSSAEKVLSEISGYNVEIENL----HPLVQRAIASASAAPDLREKYDQIPAH-IESKL 174 (666)
Q Consensus 104 ~~~~w~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~L 174 (666)
....||...+++ .+|.++++.+..++++. |+.+++..- .++-...+.... ... ..... -...|
T Consensus 44 r~~~~~~~i~~~~~~~~~prG~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~f~~~~------~~~-~~~~~~~~~~~ 115 (501)
T PHA02558 44 KYGGWDGKIRLLDYNGLLPYGLVGQLKKFAKNR-GYSIWVDPRIEENEDISREDFDEWV------SSL-EIYSGNKKIEP 115 (501)
T ss_pred cCCCCCceEEEeccCCCcccchHHHHHHHHHhc-CCeEecCcccccCCCCCHHHHHhHh------hhc-ccccCCCcCCC
Confidence 346687755554 57888999999999887 666655321 011001110000 000 00011 13579
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
+|||.+++..++.+ .++++..+||+|||+++..++..+ ....++||+||+ .|+.||.+++.+|...+...+..+..
T Consensus 116 r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~ 194 (501)
T PHA02558 116 HWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYS 194 (501)
T ss_pred CHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEec
Confidence 99999999988874 456888889999999988776543 223489999999 89999999999987544333322221
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEE
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~l 331 (666)
+... ..+..|+|+||+.+.+....+. .+|++||+||||++.+.+. ..+...+.++++++
T Consensus 195 ---g~~~--------------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~~~---~~il~~~~~~~~~l 253 (501)
T PHA02558 195 ---GTAK--------------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGKSL---TSIITKLDNCKFKF 253 (501)
T ss_pred ---Cccc--------------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccchhH---HHHHHhhhccceEE
Confidence 1111 1235689999999976554332 3789999999999976443 33333333678999
Q ss_pred EeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccE
Q 005980 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRR 411 (666)
Q Consensus 332 lLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~ 411 (666)
+|||||....... ..+..+++|-... .....++.. ..+.+...
T Consensus 254 GLTATp~~~~~~~-~~~~~~fG~i~~~------------------------v~~~~li~~------------g~l~~~~~ 296 (501)
T PHA02558 254 GLTGSLRDGKANI-LQYVGLFGDIFKP------------------------VTTSQLMEE------------GQVTDLKI 296 (501)
T ss_pred EEeccCCCccccH-HHHHHhhCCceEE------------------------ecHHHHHhC------------CCcCCceE
Confidence 9999995332211 1111111111000 001111110 12223333
Q ss_pred EEEEecCCHHHHHHHH-HHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEE
Q 005980 412 QQVFLDVAEKDMRQIY-ALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFL 490 (666)
Q Consensus 412 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~Kvl 490 (666)
..+.+..++.....+. ..+.+ ... +..+...|...+.+.+..+.+.+.+++
T Consensus 297 ~~v~~~~~~~~~~~~~~~~~~~--------------------------~~~--~l~~~~~Rn~~I~~~~~~~~~~~~~~l 348 (501)
T PHA02558 297 NSIFLRYPDEDRVKLKGEDYQE--------------------------EIK--YITSHTKRNKWIANLALKLAKKGENTF 348 (501)
T ss_pred EEEeccCCHHHhhhhcccchHH--------------------------HHH--HHhccHHHHHHHHHHHHHHHhcCCCEE
Confidence 3444444433211110 00000 000 001233466677777777767889999
Q ss_pred EEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcc
Q 005980 491 IFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570 (666)
Q Consensus 491 VF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~ 570 (666)
||+..+++++.|.+.|.+.|.++..++|+++.++|..+++.|+++.. .++|+|++.+++|+|++.+++||++.|+.+..
T Consensus 349 V~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~-~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~ 427 (501)
T PHA02558 349 VMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG-IIIVASYGVFSTGISIKNLHHVIFAHPSKSKI 427 (501)
T ss_pred EEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC-eEEEEEcceeccccccccccEEEEecCCcchh
Confidence 99999999999999999999999999999999999999999997763 56666669999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCC-cEEEEEEEeCCC
Q 005980 571 DLIQAEDRAHRIGQVS-SVNVYYLLANDT 598 (666)
Q Consensus 571 ~~~Qa~gR~~R~Gq~~-~V~v~~lv~~~t 598 (666)
.+.|++||++|.|..| .+.||.++-.-.
T Consensus 428 ~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 428 IVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred hhhhhhhccccCCCCCceEEEEEeecccc
Confidence 9999999999998776 589999986533
No 21
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-35 Score=298.51 Aligned_cols=394 Identities=19% Similarity=0.196 Sum_probs=267.8
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CC-CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RD-VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~-~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.+.|.||..-+..++.+ ++|++.+||||||++|+.++..+ +. .+.+|+++|+ .|+.|-..-+.+.+++|+..+..
T Consensus 14 ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 35788999999999885 66999999999999999988844 33 4479999999 89999999999999999988877
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHHHHHHhhhhh-h
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAKRTAATLPII-K 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~ 325 (666)
..+......+. ..+.+..|+++|++++..+.. .+...++.++|+||||+.-+..+..+-+-.-+. .
T Consensus 92 ltGev~p~~R~-----------~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 92 LTGEVRPEERE-----------ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred ecCCCChHHHH-----------HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 65443333221 122345688999999987653 233447889999999998776655443322221 2
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehh--hhhh
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK--KDVL 403 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k--~~v~ 403 (666)
+.+++++|||||- ++...+-..++-|+-+-. . -|+. .||.
T Consensus 161 k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~v------------------------------------e-vrTE~d~DV~ 202 (542)
T COG1111 161 KNPLILGLTASPG-SDLEKIQEVVENLGIEKV------------------------------------E-VRTEEDPDVR 202 (542)
T ss_pred cCceEEEEecCCC-CCHHHHHHHHHhCCcceE------------------------------------E-EecCCCccHH
Confidence 4457899999993 444444444444432211 1 1111 2333
Q ss_pred hcCCcccEEEEEecCCHHHHHH-------------------------------HHHHH-HHHH----------HHHhHHH
Q 005980 404 AQLPVKRRQQVFLDVAEKDMRQ-------------------------------IYALF-RELE----------VVKGKIK 441 (666)
Q Consensus 404 ~~lp~~~~~~v~~~~~~~~~~~-------------------------------~~~~~-~~~~----------~~~~~~~ 441 (666)
.++-.+..+.+.++++++-... +..+. ..+. .+.....
T Consensus 203 ~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a 282 (542)
T COG1111 203 PYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLA 282 (542)
T ss_pred HhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 3444444444444444332111 11110 0000 0000000
Q ss_pred hc---CC---------HH-------------------HH----hhchhhH--HHHHHhhhcCCccccHHHHHHHHHHHH-
Q 005980 442 AC---KS---------EE-------------------EV----QSLKFTE--KNLINKIYTDSAEAKIPAVLDYLETVI- 483 (666)
Q Consensus 442 ~~---~~---------~~-------------------~~----~~~~~~~--~~~~~~~~~~~~~~Kl~~l~~~l~~~~- 483 (666)
.+ .+ .. .. .+..+.. .......-..-..+|++.+.+++.+.+
T Consensus 283 ~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~ 362 (542)
T COG1111 283 EAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLE 362 (542)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHh
Confidence 00 00 00 00 0000000 000001111224589999999999988
Q ss_pred -HcCCEEEEEeccHHHHHHHHHHHHhCCceEE-EEEC--------CCCHHHHHHHHHHhcCCCCceEEEEeccccccccC
Q 005980 484 -EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCI-RIDG--------GTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 484 -~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~-~i~G--------~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gln 553 (666)
+.+.++|||++++++++.|.++|.+.|.... ++-| ++++++..+++++|+.|+ ..+|++|.+|.||||
T Consensus 363 k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge--~nVLVaTSVgEEGLD 440 (542)
T COG1111 363 KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE--YNVLVATSVGEEGLD 440 (542)
T ss_pred cCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC--ceEEEEcccccccCC
Confidence 4568999999999999999999999988775 6666 488999999999999999 778999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCC
Q 005980 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGH 621 (666)
Q Consensus 554 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~ 621 (666)
++.++.||||||.-++...+||.||.+|. +.-.||-|+++||-|+.-|....+|...+...+.+.
T Consensus 441 Ip~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~~ 505 (542)
T COG1111 441 IPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRGL 505 (542)
T ss_pred CCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999984 555788999999999999888888877666655553
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.5e-35 Score=340.75 Aligned_cols=419 Identities=19% Similarity=0.206 Sum_probs=266.5
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.++|+||.+.+..++.+ ++|++++||+|||++++.++... ...+++|||||+ .|+.||..++.++++.+...+..
T Consensus 14 ~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 14 IEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred CCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 36899999999988874 67999999999999988777654 236789999999 89999999999998765444444
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHHHHHHh-hhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAKRTAAT-LPIIK 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~~~~~~-~~l~~ 325 (666)
+.+...... +. ....+..|+|+|++.+..... .+...+|++||+||||++.+..+...... ..-..
T Consensus 92 ~~g~~~~~~--r~---------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 92 FTGEVSPEK--RA---------ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred EeCCCCHHH--HH---------HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 332211111 11 111245688999998876532 23334789999999999986543322211 11111
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCC---CHHHHhhhhhcCcccc--cccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYK---NVHEYGNRYCKGGVFG--IYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~---~~~~f~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
+.+++++|||||..+ ...+..++..|...... ..+.-...|....... ...-.....+++..+. .++-++++.
T Consensus 161 ~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~-~~~~~~l~~ 238 (773)
T PRK13766 161 KNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN-EALKDRLKK 238 (773)
T ss_pred CCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 456799999999754 56666666666432211 1111111111111000 1111223445666665 455556655
Q ss_pred hhhhcCCcccEEEEEecCCHHHHHH----HHHHHHH--------------HHHHHhHHHh--cCCHHHHhh----ch---
Q 005980 401 DVLAQLPVKRRQQVFLDVAEKDMRQ----IYALFRE--------------LEVVKGKIKA--CKSEEEVQS----LK--- 453 (666)
Q Consensus 401 ~v~~~lp~~~~~~v~~~~~~~~~~~----~~~~~~~--------------~~~~~~~~~~--~~~~~~~~~----~~--- 453 (666)
............ .++..+... +...+.. +..+...... ......+.. +.
T Consensus 239 l~~~~~~~~~~~----~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 239 LKELGVIVSISP----DVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHCCCcccCCC----CcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 442222211110 112221111 1111000 0000000000 000000000 00
Q ss_pred ------hhHH---------HHHHhh-hcCCccccHHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHhCCceEEE
Q 005980 454 ------FTEK---------NLINKI-YTDSAEAKIPAVLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIR 515 (666)
Q Consensus 454 ------~~~~---------~~~~~~-~~~~~~~Kl~~l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~ 515 (666)
.... ...... ......+|++.|.++|.+.. ..+.|+||||++..+++.|.+.|...|+++..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 0000 000000 11234689999999998876 46889999999999999999999999999999
Q ss_pred EECC--------CCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCc
Q 005980 516 IDGG--------TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 516 i~G~--------~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
++|. ++..+|.+++++|+++. ..+|++|.++++|+|++.|++||+||++||+..++||+||++|.|+
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~--~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~--- 469 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGE--FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE--- 469 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCC--CCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---
Confidence 9997 78889999999999986 5578899999999999999999999999999999999999999775
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 005980 588 VNVYYLLANDTVDDIVWDVVRSKLENL 614 (666)
Q Consensus 588 V~v~~lv~~~tiee~i~~~~~~K~~~~ 614 (666)
..+|.|++++|.||.++....+|.+.+
T Consensus 470 ~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 470 GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 678999999999999887766665555
No 23
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-35 Score=313.22 Aligned_cols=365 Identities=21% Similarity=0.276 Sum_probs=267.4
Q ss_pred hhhhhcCchHHHHHHHHHHHc---CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 168 AHIESKLLPFQRDGVRFALQH---GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 168 ~~~~~~L~p~Q~~~v~~~~~~---~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
......|||||.++++.+... ++++++..+||+|||+.|+.++..+.. ++|||||+ .|+.||.+.+.++++.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~--~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR--STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC--CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 334568999999999988875 667888889999999999999998873 49999999 78999999999988643
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHH--HHHHhcCCccEEEEcCccccCChhHHHHHHhh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKL--QNILMSSNFKIVIADESHFLKNAQAKRTAATL 321 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~--~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 321 (666)
..+.. +++..+ .... ..|+|+||+++.+. ...+....|++||+|||||+.++..+.+....
T Consensus 108 ~~~g~----~~~~~~------------~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~ 170 (442)
T COG1061 108 DEIGI----YGGGEK------------ELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELL 170 (442)
T ss_pred cccce----ecCcee------------ccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhh
Confidence 11111 111111 0001 35889999999985 34455558999999999999988777666655
Q ss_pred hhhhhcce-EEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 322 PIIKKAQY-ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 322 ~l~~~~~~-~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
.+.+ +++|||||...+...+..+. .++.+.++-...++
T Consensus 171 ----~~~~~~LGLTATp~R~D~~~~~~l~-------------------------------------~~~g~~vy~~~~~~ 209 (442)
T COG1061 171 ----SAAYPRLGLTATPEREDGGRIGDLF-------------------------------------DLIGPIVYEVSLKE 209 (442)
T ss_pred ----hcccceeeeccCceeecCCchhHHH-------------------------------------HhcCCeEeecCHHH
Confidence 4555 99999999654433332222 22221122222233
Q ss_pred hhh-hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 401 DVL-AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 401 ~v~-~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
.+. +.|.+.....+.+.++..+...|................+ ...............|+..+..++
T Consensus 210 li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 277 (442)
T COG1061 210 LIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL------------RAENEARRIAIASERKIAAVRGLL 277 (442)
T ss_pred HHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh------------hHHHHHHHHhhccHHHHHHHHHHH
Confidence 333 5788888889999888888777776554433211111100 000001111223445777777777
Q ss_pred HHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCE
Q 005980 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~ 559 (666)
.... ++.+++||+.+..+++.+...|...|+ +..++|.++..+|.+++++|+.++ ..+|+++++++||+|+|.+++
T Consensus 278 ~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~ 353 (442)
T COG1061 278 LKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADV 353 (442)
T ss_pred HHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcE
Confidence 7755 789999999999999999999999888 899999999999999999999988 678899999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhccCC-CCc--EEEEEEEeCCCHHHHHHHHHHH
Q 005980 560 VIFAELSWTPGDLIQAEDRAHRIGQ-VSS--VNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 560 VI~~d~~wnp~~~~Qa~gR~~R~Gq-~~~--V~v~~lv~~~tiee~i~~~~~~ 609 (666)
+|++.+.-++..+.|++||+.|... ++. +..|.++..++.+..+......
T Consensus 354 ~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 354 LIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9999999999999999999999543 333 7888888888888877665554
No 24
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.8e-34 Score=297.77 Aligned_cols=240 Identities=31% Similarity=0.448 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHc------------CCCeeeecCCCCcHHHHHHHHHHhcCC------CCcEEEEeCCcchHHHHHHHHHH
Q 005980 177 FQRDGVRFALQH------------GGRILLADEMGLGKTIQAIAVATCFRD------VWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 177 ~Q~~~v~~~~~~------------~~~~iLad~~GlGKTi~ala~~~~~~~------~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
||++||.||+.+ .+|+||||+||+|||+++++++..+.. ..++|||||++++.||..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 899999999754 378999999999999999999986532 22599999999999999999999
Q ss_pred hcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH-----HHHHHHhcCCccEEEEcCccccCChh
Q 005980 239 LNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL-----KLQNILMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~-----~~~~~l~~~~~~~vIiDEaH~~kn~~ 313 (666)
++.....+.+.. ...... ...........++|+||+.+. ...+.+...+|++||+||+|+++|..
T Consensus 81 ~~~~~~~v~~~~--~~~~~~--------~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~ 150 (299)
T PF00176_consen 81 FDPDSLRVIIYD--GDSERR--------RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD 150 (299)
T ss_dssp SGT-TS-EEEES--SSCHHH--------HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT
T ss_pred cccccccccccc--cccccc--------cccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc
Confidence 853233333221 111000 011223345669999999999 66677778889999999999999999
Q ss_pred HHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhh
Q 005980 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393 (666)
Q Consensus 314 s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 393 (666)
++.++++..+ ++.++|+|||||+.|++.|+|++++++.|+.+.+...|.+.|... .......+...|..++. .+
T Consensus 151 s~~~~~l~~l--~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~L~~~l~-~~ 224 (299)
T PF00176_consen 151 SKRYKALRKL--RARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---DKENSYENIERLRELLS-EF 224 (299)
T ss_dssp SHHHHHHHCC--CECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---HHTHHHHHHHHHHHHHC-CC
T ss_pred cccccccccc--ccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---ccccccccccccccccc-hh
Confidence 9999999997 799999999999999999999999999999999999999887543 11222344668888887 69
Q ss_pred hhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHH
Q 005980 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRE 432 (666)
Q Consensus 394 ~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~ 432 (666)
++||.+.++...+|+.....+.++++++|...|.++...
T Consensus 225 ~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~ 263 (299)
T PF00176_consen 225 MIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKE 263 (299)
T ss_dssp EECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999876654
No 25
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=320.70 Aligned_cols=372 Identities=26% Similarity=0.357 Sum_probs=280.9
Q ss_pred cCCChhhh---hcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhc----CCCCcEEEEeCCcchHHHHH
Q 005980 164 DQIPAHIE---SKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAA 233 (666)
Q Consensus 164 ~~~p~~~~---~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~----~~~~~~LIv~P~sl~~qW~~ 233 (666)
...|..+. +.|.|||.+|++|+. .++..+|+|||||+|||++++.+...+ ...+|.|+++|.+.+.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 34555554 689999999999996 457788999999999999999877655 34679999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCcccee-----EEec---------CCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCcc
Q 005980 234 MIQQWLNIPPSEIVVVLSQLGGSNRSGFT-----IVSS---------NTKRNIPLDGLFNIISYDVVLKLQNILMSSNFK 299 (666)
Q Consensus 234 e~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~ 299 (666)
++..|.+- .. ++...+....+.-.. .... ..+........+..++|++.......+..++|+
T Consensus 363 e~~~wap~--~~--vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~ 438 (696)
T KOG0383|consen 363 EFELWAPS--FY--VVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWG 438 (696)
T ss_pred chhccCCC--cc--cccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcc
Confidence 99999842 11 222222222111000 0000 000112234557789999999999999999999
Q ss_pred EEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCC
Q 005980 300 IVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGA 379 (666)
Q Consensus 300 ~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~ 379 (666)
++|+||+|+++|..+++...+... ...++++|||||.+|++.+||++|+|+.|+.|.+...|.+.|..- ...
T Consensus 439 ~livde~~rlkn~~s~~f~~l~~~--~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~------~~~ 510 (696)
T KOG0383|consen 439 LLIVDEAHRLKNKQSKRFRVLTAY--PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI------SCE 510 (696)
T ss_pred eeEeechhhcccchhhhhhhcccc--ccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh------hHH
Confidence 999999999999999988888876 889999999999999999999999999999999999998876432 112
Q ss_pred CCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHH-------------HHHhHHHhcCCH
Q 005980 380 SNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELE-------------VVKGKIKACKSE 446 (666)
Q Consensus 380 ~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 446 (666)
...++++.++. +.|+||.+.||+..+|.|.+.++.+.+++.|.+.|......-- .+....+.++..
T Consensus 511 ~~~~~l~~l~~-p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383|consen 511 EQIKKLHLLLC-PHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred HHHHhhccccC-chhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcC
Confidence 23557777887 7999999999999999999999999999999988876553311 111111111111
Q ss_pred HHHhhch----hhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCH
Q 005980 447 EEVQSLK----FTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPP 522 (666)
Q Consensus 447 ~~~~~~~----~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~ 522 (666)
..+.... ......... ....++|+..|...+..+...|+||+||++++.++|.+++++...+ .|.+++|....
T Consensus 590 py~~~~~e~~~~~~~~~~~~--l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~ 666 (696)
T KOG0383|consen 590 PYLSPLEEPLEENGEYLGSA--LIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITG 666 (696)
T ss_pred cccCccccccccchHHHHHH--HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccc
Confidence 1111100 000000000 1135678999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhcC-CCCceEEEEeccccccc
Q 005980 523 ASRQALVTEFQE-KDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 523 ~~R~~~i~~F~~-~~~~~v~L~st~a~~~G 551 (666)
.+|+..+++|+. +.+-.+||+||+|||.|
T Consensus 667 ~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 667 PERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999994 44568999999999987
No 26
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=6.1e-31 Score=265.53 Aligned_cols=340 Identities=20% Similarity=0.271 Sum_probs=248.2
Q ss_pred hcCchHHHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc-hHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL-RLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl-~~qW~~e~~~~~~~~~~~i~~ 248 (666)
..+||||...+..|..+| +.+|+..++|+|||++.+..++..+ +.+||+|.+++ +.||..++..|..+.+..+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tik--K~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIK--KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeec--ccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 579999999999998643 3568888999999999998887766 88999999965 999999999999888777766
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH----------HHHHHHhcCCccEEEEcCccccCChhHHHHH
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL----------KLQNILMSSNFKIVIADESHFLKNAQAKRTA 318 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~----------~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~ 318 (666)
...+ .+.....+..|+|+||.++. +.++.+....|+++|+||.|.+...-..+
T Consensus 379 FTsd---------------~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRR-- 441 (776)
T KOG1123|consen 379 FTSD---------------AKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRR-- 441 (776)
T ss_pred eecc---------------ccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHH--
Confidence 5432 23334456679999999984 45667888899999999999996544333
Q ss_pred HhhhhhhhcceEEEeeccCCCCChHHHHHHHHH-hCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEA-LYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~-l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+..++ .+...++||||.+..+- =..=|+| +.|.++.. |.-+| -+
T Consensus 442 -Vlsiv-~aHcKLGLTATLvREDd--KI~DLNFLIGPKlYEA---------------------nWmdL---~~------- 486 (776)
T KOG1123|consen 442 -VLSIV-QAHCKLGLTATLVREDD--KITDLNFLIGPKLYEA---------------------NWMDL---QK------- 486 (776)
T ss_pred -HHHHH-HHHhhccceeEEeeccc--cccccceeecchhhhc---------------------cHHHH---Hh-------
Confidence 33333 67778999999976431 1111222 22332210 11111 11
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
.+.+....--.|+|+|+++..+.|...-.. -..++..-+..|..++.=
T Consensus 487 -----kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~---------------------------kr~lLyvMNP~KFraCqf 534 (776)
T KOG1123|consen 487 -----KGHIAKVQCAEVWCPMTPEFYREYLRENTR---------------------------KRMLLYVMNPNKFRACQF 534 (776)
T ss_pred -----CCceeEEeeeeeecCCCHHHHHHHHhhhhh---------------------------hhheeeecCcchhHHHHH
Confidence 123344556689999999987777542211 011222345678888777
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
+|.-+-.+|.|+|||+..+-.+....-.| |- ..|.|.|++.+|.+++++|+.++.+..+.+| ++|.+.+||+.|
T Consensus 535 LI~~HE~RgDKiIVFsDnvfALk~YAikl---~K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEA 608 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEA 608 (776)
T ss_pred HHHHHHhcCCeEEEEeccHHHHHHHHHHc---CC--ceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcc
Confidence 77777678999999999876655444333 33 4689999999999999999999987666666 899999999999
Q ss_pred CEEEEecCCC-CcchhhhhhhhhhccCCC----CcEEEEEEEeCCCHHHHH
Q 005980 558 STVIFAELSW-TPGDLIQAEDRAHRIGQV----SSVNVYYLLANDTVDDIV 603 (666)
Q Consensus 558 ~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~----~~V~v~~lv~~~tiee~i 603 (666)
+++|..+.+. +..+..||.||+.|.... =+++.|-||+.+|.|-..
T Consensus 609 nvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 609 NVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred cEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 9999998775 677889999999996533 258999999999988443
No 27
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=2e-28 Score=270.98 Aligned_cols=321 Identities=19% Similarity=0.227 Sum_probs=214.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHH-HHhcC-------CCC-cEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAV-ATCFR-------DVW-PVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~-~~~~~-------~~~-~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
..+.|+|.+++..++. |..+|+..+||+|||++.+.- +..+. ..+ .+|||||+ .|..|+.+++.++...
T Consensus 151 ~~pt~iQ~~aip~~l~-G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS-GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 3689999999998887 678899999999999986532 22211 112 38999999 8999999999998753
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTA 318 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~ 318 (666)
....+..++ ++...... .........|+|+|+..+...... +.-.++++||+||||++.+.+.. ...
T Consensus 230 ~~i~~~~~~---gg~~~~~q-------~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~ 299 (545)
T PTZ00110 230 SKIRNTVAY---GGVPKRGQ-------IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIR 299 (545)
T ss_pred cCccEEEEe---CCCCHHHH-------HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHH
Confidence 322333322 22211100 001112346889999988765432 22236789999999999765432 233
Q ss_pred HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
.+...+....+.+++|||. +.++-.+...+ +.. .++.+.--
T Consensus 300 ~il~~~~~~~q~l~~SAT~----p~~v~~l~~~l---------------~~~--------------------~~v~i~vg 340 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATW----PKEVQSLARDL---------------CKE--------------------EPVHVNVG 340 (545)
T ss_pred HHHHhCCCCCeEEEEEeCC----CHHHHHHHHHH---------------hcc--------------------CCEEEEEC
Confidence 3333333556789999996 12221111111 000 00000000
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
..++ .......+.+.+. ....|...+.++
T Consensus 341 ~~~l--~~~~~i~q~~~~~-------------------------------------------------~~~~k~~~L~~l 369 (545)
T PTZ00110 341 SLDL--TACHNIKQEVFVV-------------------------------------------------EEHEKRGKLKML 369 (545)
T ss_pred CCcc--ccCCCeeEEEEEE-------------------------------------------------echhHHHHHHHH
Confidence 0000 0000111111110 011244456666
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
+......+.++||||+....++.|...|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|||+++++
T Consensus 370 l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~--~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 370 LQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK--SPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC--CcEEEEcchhhcCCCcccCC
Confidence 6665557889999999999999999999999999999999999999999999999987 56799999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
+||+||+|+++..|.||+||++|.|.+..+ |.|++++
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 999999999999999999999999976544 5555554
No 28
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.96 E-value=1e-28 Score=274.29 Aligned_cols=140 Identities=26% Similarity=0.337 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc
Q 005980 471 KIPAVLDYLETVIEA--GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548 (666)
Q Consensus 471 Kl~~l~~~l~~~~~~--g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~ 548 (666)
|+..+...+..+..+ -.|+|+|+++...++.++..+..+++.+....+ + ++-...+..|.+ +.++++-...+
T Consensus 1204 kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk~---I~clll~~~~~ 1277 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFKS---IDCLLLFVSKG 1277 (1394)
T ss_pred CchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhccc---ceEEEEEeccC
Confidence 555554444433222 259999999999999999999999988766555 3 356677888865 68899999999
Q ss_pred ccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhh
Q 005980 549 GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQ 616 (666)
Q Consensus 549 ~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~ 616 (666)
+-|+||..|.||++.+|--||+...||+||+||+||++++.||+++..+|+||.|+.....|-+.+..
T Consensus 1278 ~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~ 1345 (1394)
T KOG0298|consen 1278 SKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTK 1345 (1394)
T ss_pred cccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988887765544
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=2e-27 Score=261.05 Aligned_cols=316 Identities=15% Similarity=0.197 Sum_probs=206.0
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCC----------CCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRD----------VWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~----------~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.++|||.+++..+++ |..+|+..+||+|||+..+..+ ..+.. ...+|||+|+ .|..|+.+++..+..
T Consensus 109 ~~~~iQ~~ai~~~~~-G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~ 187 (475)
T PRK01297 109 YCTPIQAQVLGYTLA-GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK 187 (475)
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc
Confidence 589999999998776 7789999999999998865432 22211 2468999999 899999999988764
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HH
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RT 317 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~ 317 (666)
.....+..+.+ +........ ........|+|+|++.+...... +.-.++++||+||||++.+.+.. ..
T Consensus 188 ~~~~~v~~~~g--g~~~~~~~~-------~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l 258 (475)
T PRK01297 188 YTGLNVMTFVG--GMDFDKQLK-------QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQV 258 (475)
T ss_pred cCCCEEEEEEc--cCChHHHHH-------HHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHH
Confidence 32222222221 111110000 00112346899999999765432 22236789999999999765421 12
Q ss_pred HHhhhhhh--hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhh
Q 005980 318 AATLPIIK--KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMI 395 (666)
Q Consensus 318 ~~~~~l~~--~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~l 395 (666)
..+..... ...+.+++|||.- +++.++ ...+ .. .+..+
T Consensus 259 ~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~---~~~~---------------~~---------------------~~~~v 298 (475)
T PRK01297 259 RQIIRQTPRKEERQTLLFSATFT-DDVMNL---AKQW---------------TT---------------------DPAIV 298 (475)
T ss_pred HHHHHhCCCCCCceEEEEEeecC-HHHHHH---HHHh---------------cc---------------------CCEEE
Confidence 22222221 1356899999962 112111 1110 00 00000
Q ss_pred hehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHH
Q 005980 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV 475 (666)
Q Consensus 396 rr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l 475 (666)
.-....+ ......+.++.. ..+.|...+
T Consensus 299 ~~~~~~~---~~~~~~~~~~~~-------------------------------------------------~~~~k~~~l 326 (475)
T PRK01297 299 EIEPENV---ASDTVEQHVYAV-------------------------------------------------AGSDKYKLL 326 (475)
T ss_pred EeccCcC---CCCcccEEEEEe-------------------------------------------------cchhHHHHH
Confidence 0000000 000001111111 112233444
Q ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcc
Q 005980 476 LDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLT 555 (666)
Q Consensus 476 ~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~ 555 (666)
.+++.. ....++||||+....++.+...|...|+.+..++|+++..+|.++++.|++|+ ..+|++|+++++|||++
T Consensus 327 ~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~--~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 327 YNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGK--IRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEccccccCCccc
Confidence 444443 34579999999999999999999999999999999999999999999999988 66888999999999999
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 556 AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 556 ~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
++++||++++|++...|.|+.||++|.|+...+ +.++.+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecH
Confidence 999999999999999999999999999976543 334443
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=7.7e-28 Score=263.59 Aligned_cols=315 Identities=17% Similarity=0.240 Sum_probs=212.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhcC-CCCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLNI-PPSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~-~~~~i 246 (666)
.+.|+|.+++..++. |..+|+..+||+|||..++. ++..+.. ...+||+||+ .|..||.+++.++... +...+
T Consensus 26 ~~t~iQ~~ai~~~l~-g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 26 EMTPIQAQSLPAILA-GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCCHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 588999999999887 66899999999999987543 3333322 2258999999 8999999999987632 22222
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPI 323 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l 323 (666)
.... ++..... ..........|+|+|++.+...... +.-.++++||+||||++.+.+. .....+...
T Consensus 105 ~~~~---Gg~~~~~-------~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 105 LTLC---GGVPMGP-------QIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred EEEE---CCCChHH-------HHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 2222 1211100 0011113456899999998766532 2223678999999999876542 223344444
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
+....+.+++|||+- .++-.+.. .| +..+..+.-...
T Consensus 175 ~~~~~q~ll~SAT~~----~~~~~l~~---------------~~---------------------~~~~~~i~~~~~--- 211 (460)
T PRK11776 175 APARRQTLLFSATYP----EGIAAISQ---------------RF---------------------QRDPVEVKVEST--- 211 (460)
T ss_pred CCcccEEEEEEecCc----HHHHHHHH---------------Hh---------------------cCCCEEEEECcC---
Confidence 445677899999982 11111111 11 000000000000
Q ss_pred hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHH
Q 005980 404 AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVI 483 (666)
Q Consensus 404 ~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~ 483 (666)
...+. ....++.... ..|+..+..++..
T Consensus 212 ~~~~~--i~~~~~~~~~------------------------------------------------~~k~~~l~~ll~~-- 239 (460)
T PRK11776 212 HDLPA--IEQRFYEVSP------------------------------------------------DERLPALQRLLLH-- 239 (460)
T ss_pred CCCCC--eeEEEEEeCc------------------------------------------------HHHHHHHHHHHHh--
Confidence 00111 1111221111 1245556666654
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEe
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFA 563 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~ 563 (666)
..+.++||||+....++.+.+.|...|+.+..+||+++..+|+.+++.|+++. ..+|++|+++++|||++++++||++
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~--~~vLVaTdv~~rGiDi~~v~~VI~~ 317 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS--CSVLVATDVAARGLDIKALEAVINY 317 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEecccccccchhcCCeEEEe
Confidence 35678999999999999999999999999999999999999999999999887 6678999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 564 ELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 564 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
|+|.++..|.||+||++|.|+... .|.|+..+
T Consensus 318 d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 318 ELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred cCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 999999999999999999987644 45556554
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=2.1e-27 Score=258.50 Aligned_cols=314 Identities=15% Similarity=0.186 Sum_probs=208.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC-------CCCcEEEEeCC-cchHHHHHHHHHHhcCC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR-------DVWPVLILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~-------~~~~~LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
..++|+|.+++..++. |..+|+..+||+|||+.++..+. .+. ....+||++|+ .|..|+.+.+..+....
T Consensus 22 ~~p~~iQ~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~ 100 (434)
T PRK11192 22 TRPTAIQAEAIPPALD-GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT 100 (434)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC
Confidence 3578999999999886 66889999999999998764433 221 12469999999 78999999888876433
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAA 319 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~ 319 (666)
...+..+.++ ...... .........|+|+|++.+...... +...++++||+||||++...+. .....
T Consensus 101 ~~~v~~~~gg---~~~~~~-------~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 101 HLDIATITGG---VAYMNH-------AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred CcEEEEEECC---CCHHHH-------HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 3333333221 111000 001112345899999988765432 2234578999999999876542 22223
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k 399 (666)
+........+.+++|||+-.....++. ..+ +..+..+.-..
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~~~---~~~------------------------------------~~~~~~i~~~~ 211 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQDFA---ERL------------------------------------LNDPVEVEAEP 211 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHHHH---HHH------------------------------------ccCCEEEEecC
Confidence 332223446779999998322111111 100 00000000000
Q ss_pred hhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 400 ~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
. ........+ .+...+ ....|...+..++
T Consensus 212 ~---~~~~~~i~~-~~~~~~-----------------------------------------------~~~~k~~~l~~l~ 240 (434)
T PRK11192 212 S---RRERKKIHQ-WYYRAD-----------------------------------------------DLEHKTALLCHLL 240 (434)
T ss_pred C---cccccCceE-EEEEeC-----------------------------------------------CHHHHHHHHHHHH
Confidence 0 000000001 111110 0112444455544
Q ss_pred HHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCE
Q 005980 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~ 559 (666)
.. ....++||||.....++.+...|...|+.+..++|+++..+|..+++.|++|. ..+|++|+++++|||++++++
T Consensus 241 ~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~--~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 241 KQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR--VNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred hc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCC--CcEEEEccccccCccCCCCCE
Confidence 43 35689999999999999999999999999999999999999999999999988 678999999999999999999
Q ss_pred EEEecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 560 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 560 VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
||++|+|+++..|.||+||++|.|....+.+
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999987655444
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=2.5e-27 Score=258.53 Aligned_cols=327 Identities=17% Similarity=0.207 Sum_probs=211.9
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCC---------CCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRD---------VWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~---------~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
..+.|+|.+++..++. +..+|+..+||+|||+.++..+. .+.. ...+|||||+ .|..||.+++..+..
T Consensus 22 ~~pt~iQ~~ai~~il~-g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~ 100 (456)
T PRK10590 22 REPTPIQQQAIPAVLE-GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK 100 (456)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 3688999999998887 67899999999999998654433 2211 1258999999 899999999999875
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhH-HHH
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQA-KRT 317 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s-~~~ 317 (666)
.....+..+.. +...... .........|+|+|++.+..... .+...++++||+||||++...+. ...
T Consensus 101 ~~~~~~~~~~g---g~~~~~~-------~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 101 YLNIRSLVVFG---GVSINPQ-------MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred cCCCEEEEEEC---CcCHHHH-------HHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHH
Confidence 43333333322 1111000 00111234689999999876543 12234688999999999876542 122
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
..+...+....+.+++|||+-. ++-.+...+. ..+..+.-
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~----~~~~l~~~~~------------------------------------~~~~~i~~ 210 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSD----DIKALAEKLL------------------------------------HNPLEIEV 210 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcH----HHHHHHHHHc------------------------------------CCCeEEEE
Confidence 2233333345678999999721 1111111110 00000000
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
.... ..+....+.+. ..+.. .|...+..
T Consensus 211 ~~~~---~~~~~i~~~~~-~~~~~------------------------------------------------~k~~~l~~ 238 (456)
T PRK10590 211 ARRN---TASEQVTQHVH-FVDKK------------------------------------------------RKRELLSQ 238 (456)
T ss_pred eccc---ccccceeEEEE-EcCHH------------------------------------------------HHHHHHHH
Confidence 0000 00001111111 11110 11122222
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
++.. ....++||||.....++.+.+.|...|+.+..+||.++..+|..+++.|+++. ..+|++|+++++|||++++
T Consensus 239 l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~iLVaTdv~~rGiDip~v 314 (456)
T PRK10590 239 MIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD--IRVLVATDIAARGLDIEEL 314 (456)
T ss_pred HHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEccHHhcCCCcccC
Confidence 2222 24579999999999999999999999999999999999999999999999987 6688999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
++||+|++|.++..|.|++||++|.|....+. .|++.+ |..++..+++
T Consensus 315 ~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEAL--SLVCVD--EHKLLRDIEK 362 (456)
T ss_pred CEEEEeCCCCCHHHhhhhccccccCCCCeeEE--EEecHH--HHHHHHHHHH
Confidence 99999999999999999999999999765443 344432 4445554443
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=7.9e-27 Score=252.84 Aligned_cols=315 Identities=16% Similarity=0.189 Sum_probs=207.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC----------CCCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR----------DVWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~----------~~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.+.|.|.+++..++. |..+++..+||+|||+.++..+. .+. ....+||+||+ .|..|+.+++..+..
T Consensus 30 ~pt~iQ~~aip~il~-g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLA-GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQ 108 (423)
T ss_pred CCCHHHHHHHHHHhC-CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhc
Confidence 578999999998886 67899999999999998764432 121 12358999999 899999999888764
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHH-HH
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAK-RT 317 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~-~~ 317 (666)
.....+..+. ++...... ........+|+|+|++.+..... .+.-.++++||+||||++.+.+.. ..
T Consensus 109 ~~~~~v~~~~---gg~~~~~~-------~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i 178 (423)
T PRK04837 109 ATGLKLGLAY---GGDGYDKQ-------LKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDI 178 (423)
T ss_pred cCCceEEEEE---CCCCHHHH-------HHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHH
Confidence 3322333322 12111100 00111234689999999876543 223346889999999998765421 12
Q ss_pred HHhhhhhhh--cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhh
Q 005980 318 AATLPIIKK--AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMI 395 (666)
Q Consensus 318 ~~~~~l~~~--~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~l 395 (666)
..+...+.. ....+++|||.-. ...++ .. . .+..+..+
T Consensus 179 ~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~---~~---------------~---------------------~~~~p~~i 218 (423)
T PRK04837 179 RWLFRRMPPANQRLNMLFSATLSY-RVREL---AF---------------E---------------------HMNNPEYV 218 (423)
T ss_pred HHHHHhCCCccceeEEEEeccCCH-HHHHH---HH---------------H---------------------HCCCCEEE
Confidence 222222211 2345899999721 11111 00 0 00000000
Q ss_pred hehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHH
Q 005980 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV 475 (666)
Q Consensus 396 rr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l 475 (666)
. .... ........+.++. . ....|+..+
T Consensus 219 ~-v~~~--~~~~~~i~~~~~~-~------------------------------------------------~~~~k~~~l 246 (423)
T PRK04837 219 E-VEPE--QKTGHRIKEELFY-P------------------------------------------------SNEEKMRLL 246 (423)
T ss_pred E-EcCC--CcCCCceeEEEEe-C------------------------------------------------CHHHHHHHH
Confidence 0 0000 0000000111111 0 111244455
Q ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcc
Q 005980 476 LDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLT 555 (666)
Q Consensus 476 ~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~ 555 (666)
..++.. ....++||||+....++.+...|...|+++..++|+++..+|..++++|++++ ..+|++|+++++|||++
T Consensus 247 ~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~--~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 247 QTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD--LDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC--CcEEEEechhhcCCCcc
Confidence 555544 35789999999999999999999999999999999999999999999999998 67899999999999999
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 556 AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 556 ~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
++++||+||+|+++..|.||+||++|.|+.-.+ +.|+.+
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999999999999999976543 445554
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=1.4e-26 Score=255.68 Aligned_cols=331 Identities=18% Similarity=0.213 Sum_probs=212.6
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hc----------CCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CF----------RDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~----------~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
..++|+|.+++..++. |..+|+..+||+|||+.++..+. .+ .....+|||+|+ .|..|+.+++..+.
T Consensus 142 ~~ptpiQ~~aip~il~-g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 142 EFPTPIQMQAIPAALS-GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4689999999999886 67899999999999998764332 11 123459999999 78999999888876
Q ss_pred cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-H
Q 005980 240 NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-R 316 (666)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~ 316 (666)
.........+. ++...... .........++|+|++.+...... +.-.+..+||+||||++...+.. .
T Consensus 221 ~~~~~~~~~~~---gG~~~~~q-------~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~ 290 (518)
T PLN00206 221 KGLPFKTALVV---GGDAMPQQ-------LYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQ 290 (518)
T ss_pred CCCCceEEEEE---CCcchHHH-------HHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHH
Confidence 42222222222 12111100 001112356889999988655432 22346789999999998765422 1
Q ss_pred HHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhh
Q 005980 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIR 396 (666)
Q Consensus 317 ~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lr 396 (666)
...+...+ ..++.+++|||.-. ++-.+...+..+ ...+.
T Consensus 291 i~~i~~~l-~~~q~l~~SATl~~----~v~~l~~~~~~~------------------------------------~~~i~ 329 (518)
T PLN00206 291 VMQIFQAL-SQPQVLLFSATVSP----EVEKFASSLAKD------------------------------------IILIS 329 (518)
T ss_pred HHHHHHhC-CCCcEEEEEeeCCH----HHHHHHHHhCCC------------------------------------CEEEE
Confidence 22222222 45688999999721 111111111100 00000
Q ss_pred ehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHH
Q 005980 397 RLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476 (666)
Q Consensus 397 r~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~ 476 (666)
... ...+........+.... ..|...+.
T Consensus 330 ~~~----~~~~~~~v~q~~~~~~~------------------------------------------------~~k~~~l~ 357 (518)
T PLN00206 330 IGN----PNRPNKAVKQLAIWVET------------------------------------------------KQKKQKLF 357 (518)
T ss_pred eCC----CCCCCcceeEEEEeccc------------------------------------------------hhHHHHHH
Confidence 000 00111111111111111 11233445
Q ss_pred HHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh-CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcc
Q 005980 477 DYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK-KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLT 555 (666)
Q Consensus 477 ~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~ 555 (666)
+++........++|||+.....++.+...|.. .|+++..+||+++..+|..+++.|++|. ..+|++|+++++|||++
T Consensus 358 ~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~--~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 358 DILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGE--VPVIVATGVLGRGVDLL 435 (518)
T ss_pred HHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEEecHhhccCCcc
Confidence 55544333456899999999999999999975 5999999999999999999999999988 56899999999999999
Q ss_pred cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 005980 556 AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612 (666)
Q Consensus 556 ~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~ 612 (666)
.+++||+||+|.+...|.||+||++|.|.... ++.|+..+ |..++..+.+.++
T Consensus 436 ~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~--~~~~~~~l~~~l~ 488 (518)
T PLN00206 436 RVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE--DRNLFPELVALLK 488 (518)
T ss_pred cCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh--HHHHHHHHHHHHH
Confidence 99999999999999999999999999996544 34455543 3344544444333
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=5.8e-27 Score=256.38 Aligned_cols=309 Identities=17% Similarity=0.178 Sum_probs=206.4
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
..++|+|.+++..++. |..+++..+||+|||+..+..+.. ..+.+|||+|+ +|+.+|...+... +++ ...+.
T Consensus 10 ~~~r~~Q~~ai~~~l~-g~dvlv~apTGsGKTl~y~lp~l~--~~~~~lVi~P~~~L~~dq~~~l~~~-gi~---~~~l~ 82 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL-GRDCFVVMPTGGGKSLCYQLPALC--SDGITLVISPLISLMEDQVLQLKAS-GIP---ATFLN 82 (470)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHhHHHHHHHHH--cCCcEEEEecHHHHHHHHHHHHHHc-CCc---EEEEe
Confidence 3689999999999887 568999999999999976554443 35789999999 8889898888764 322 11111
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHH---HHHHH-hcCCccEEEEcCccccCChhHH---HHHH---h
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLK---LQNIL-MSSNFKIVIADESHFLKNAQAK---RTAA---T 320 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~---~~~~l-~~~~~~~vIiDEaH~~kn~~s~---~~~~---~ 320 (666)
+ .........+.... ......++++|++.+.. ....+ ...++++||+||||.+..++.. .+.. +
T Consensus 83 ~--~~~~~~~~~i~~~~----~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 83 S--SQSKEQQKNVLTDL----KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred C--CCCHHHHHHHHHHH----hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 1 11111000000000 11224588999998753 23333 4568899999999998754321 1112 2
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
.... ...++++|||||-.....++...+.+-.|..+.. .
T Consensus 157 ~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s---------------------------------- 195 (470)
T TIGR00614 157 KQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT------S---------------------------------- 195 (470)
T ss_pred HHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------C----------------------------------
Confidence 2221 3456899999995443344433332211111000 0
Q ss_pred hhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 401 DVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 401 ~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
..-|.. ...+.-. ....+..+.+++.
T Consensus 196 ---~~r~nl-~~~v~~~--------------------------------------------------~~~~~~~l~~~l~ 221 (470)
T TIGR00614 196 ---FDRPNL-YYEVRRK--------------------------------------------------TPKILEDLLRFIR 221 (470)
T ss_pred ---CCCCCc-EEEEEeC--------------------------------------------------CccHHHHHHHHHH
Confidence 000000 0000000 0012223344443
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEE
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~V 560 (666)
.. ..+.+.||||.....++.+...|...|+++..+||+++..+|..+++.|.++. ..+|++|.++++|||++++++|
T Consensus 222 ~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~--~~vLVaT~~~~~GID~p~V~~V 298 (470)
T TIGR00614 222 KE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE--IQVVVATVAFGMGINKPDVRFV 298 (470)
T ss_pred Hh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC--CcEEEEechhhccCCcccceEE
Confidence 21 35777899999999999999999999999999999999999999999999887 5678899999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhccCCCCcEEEE
Q 005980 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 561 I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
|++++|.++..|.|++||++|.|+...+.++
T Consensus 299 I~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 299 IHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred EEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999999999999999999999988765554
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.6e-26 Score=256.84 Aligned_cols=316 Identities=16% Similarity=0.229 Sum_probs=209.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC----------CCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR----------DVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~----------~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
..+.|.|.+++..++. |..+|+..+||+|||+.++..+.. +. ....+|||||+ .|..|+.+++.++.
T Consensus 30 ~~ptpiQ~~~ip~~l~-G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~ 108 (572)
T PRK04537 30 TRCTPIQALTLPVALP-GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFG 108 (572)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 3688999999999887 678999999999999987654432 21 12469999999 89999999999887
Q ss_pred cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhH-H
Q 005980 240 NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQA-K 315 (666)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s-~ 315 (666)
......+..+.. +...... ........+|+|+|++.+...... +.....++||+||||++...+. .
T Consensus 109 ~~~~i~v~~l~G---g~~~~~q-------~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~ 178 (572)
T PRK04537 109 ADLGLRFALVYG---GVDYDKQ-------RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK 178 (572)
T ss_pred ccCCceEEEEEC---CCCHHHH-------HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHH
Confidence 432222333322 1111100 000112345899999988765432 2233568899999999865432 1
Q ss_pred HHHHhhhhhhh--cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhh
Q 005980 316 RTAATLPIIKK--AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATV 393 (666)
Q Consensus 316 ~~~~~~~l~~~--~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 393 (666)
....+...+.. ..+.+++|||.-. ++..+.... +..+.
T Consensus 179 ~i~~il~~lp~~~~~q~ll~SATl~~----~v~~l~~~~------------------------------------l~~p~ 218 (572)
T PRK04537 179 DIRFLLRRMPERGTRQTLLFSATLSH----RVLELAYEH------------------------------------MNEPE 218 (572)
T ss_pred HHHHHHHhcccccCceEEEEeCCccH----HHHHHHHHH------------------------------------hcCCc
Confidence 22222222222 4567999999621 111111000 00000
Q ss_pred hhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHH
Q 005980 394 MIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP 473 (666)
Q Consensus 394 ~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~ 473 (666)
.+...... ..+....+.+++.. ...|+.
T Consensus 219 ~i~v~~~~---~~~~~i~q~~~~~~-------------------------------------------------~~~k~~ 246 (572)
T PRK04537 219 KLVVETET---ITAARVRQRIYFPA-------------------------------------------------DEEKQT 246 (572)
T ss_pred EEEecccc---ccccceeEEEEecC-------------------------------------------------HHHHHH
Confidence 00000000 00111122222111 112444
Q ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccC
Q 005980 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 474 ~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gln 553 (666)
.+..++.. ..+.++||||.....++.|.+.|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|||
T Consensus 247 ~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~--~~VLVaTdv~arGID 322 (572)
T PRK04537 247 LLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ--LEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEehhhhcCCC
Confidence 45555543 35789999999999999999999999999999999999999999999999987 678999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 554 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
++.+++||+||+|+++..|.|++||++|.|....+ +.|++.
T Consensus 323 ip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred ccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 99999999999999999999999999999986544 334443
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=9.7e-26 Score=251.85 Aligned_cols=311 Identities=17% Similarity=0.213 Sum_probs=209.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcC-CCCc
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNI-PPSE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~-~~~~ 245 (666)
..+.|+|.+++..++. +..+|+..+||+|||++.+. ++..+. ....+||+||+ .|..||.+++.++... +...
T Consensus 27 ~~ptpiQ~~ai~~ll~-g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 27 EKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 3588999999999886 66889999999999998643 333332 23368999999 8999999999988642 2222
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATLP 322 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~ 322 (666)
+..++ ++...... .........|+|+|+..+..+... +.-.++.+||+||||.+.+.+.. ....+..
T Consensus 106 v~~~~---gG~~~~~q-------~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 106 VVALY---GGQRYDVQ-------LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred EEEEE---CCcCHHHH-------HHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 22222 22211100 001112356899999988765432 22346789999999998665432 2233333
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v 402 (666)
.+....+.+++|||.- . .+.. +...|... +..+. +....
T Consensus 176 ~lp~~~q~llfSAT~p-~---~i~~---------------i~~~~l~~---------------------~~~i~-i~~~~ 214 (629)
T PRK11634 176 QIPEGHQTALFSATMP-E---AIRR---------------ITRRFMKE---------------------PQEVR-IQSSV 214 (629)
T ss_pred hCCCCCeEEEEEccCC-h---hHHH---------------HHHHHcCC---------------------CeEEE-ccCcc
Confidence 3345567899999961 1 1111 11111100 00000 00000
Q ss_pred hhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHH
Q 005980 403 LAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETV 482 (666)
Q Consensus 403 ~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~ 482 (666)
...|. ....++.. ....|..++.+++..
T Consensus 215 -~~~~~--i~q~~~~v------------------------------------------------~~~~k~~~L~~~L~~- 242 (629)
T PRK11634 215 -TTRPD--ISQSYWTV------------------------------------------------WGMRKNEALVRFLEA- 242 (629)
T ss_pred -ccCCc--eEEEEEEe------------------------------------------------chhhHHHHHHHHHHh-
Confidence 00010 01111111 112355666666654
Q ss_pred HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE
Q 005980 483 IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562 (666)
Q Consensus 483 ~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~ 562 (666)
....++||||.....++.+...|...|+.+..++|.++..+|..++++|+++. ..+|++|+++++|||++.+++||+
T Consensus 243 -~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~--~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 243 -EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR--LDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred -cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCC--CCEEEEcchHhcCCCcccCCEEEE
Confidence 35678999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 563 AELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 563 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
||+|.++..|.|++||++|.|....+.
T Consensus 320 ~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred eCCCCCHHHHHHHhccccCCCCcceEE
Confidence 999999999999999999999765433
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=4.5e-26 Score=246.11 Aligned_cols=317 Identities=17% Similarity=0.248 Sum_probs=205.3
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.+.|+|.+++..++. +..+++..+||+|||+.++..+ ..+. ....+||++|+ .|..|+.+.+..+.......+.
T Consensus 50 ~~~~~Q~~ai~~i~~-~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILD-GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEE
Confidence 689999999999887 5678899999999999875433 3332 34579999999 7889988888877643222222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHH-HHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAK-RTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~ 324 (666)
...+ +....... ........++|+|++.+..... .+.-.++++||+||||++...+.. ....+...+
T Consensus 129 ~~~g--~~~~~~~~--------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~ 198 (401)
T PTZ00424 129 ACVG--GTVVRDDI--------NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL 198 (401)
T ss_pred EEEC--CcCHHHHH--------HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhC
Confidence 2211 11111100 0111224588999998865443 223346899999999998654322 112222222
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.+++|||+-. ++..+.. .|..... .+.+ +. .
T Consensus 199 ~~~~~~i~~SAT~~~----~~~~~~~---------------~~~~~~~-------------------~~~~---~~---~ 234 (401)
T PTZ00424 199 PPDVQVALFSATMPN----EILELTT---------------KFMRDPK-------------------RILV---KK---D 234 (401)
T ss_pred CCCcEEEEEEecCCH----HHHHHHH---------------HHcCCCE-------------------EEEe---CC---C
Confidence 244678999999721 1111111 1100000 0000 00 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
.+........++...... .+...+.+++.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~l~~~~~~--~ 265 (401)
T PTZ00424 235 ELTLEGIRQFYVAVEKEE-----------------------------------------------WKFDTLCDLYET--L 265 (401)
T ss_pred CcccCCceEEEEecChHH-----------------------------------------------HHHHHHHHHHHh--c
Confidence 000011111122111110 122223333332 2
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
...++||||.....++.+...|...++.+..++|+++..+|..+++.|++|. ..+|++|+++++|+|++.+++||+++
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~--~~vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS--TRVLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEcccccCCcCcccCCEEEEEC
Confidence 4568999999999999999999999999999999999999999999999987 66889999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++.+...+.|++||++|.|... .++.|+.++
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CCCCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 9999999999999999998654 345566544
No 39
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=241.98 Aligned_cols=422 Identities=16% Similarity=0.189 Sum_probs=239.6
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
..||+||.+-+.-++ |.++|+|.+||+|||++|.-++..+. ..+++++.+|+ .|+.|....+..++ ++ ....
T Consensus 61 ~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~-~~-~~~T 136 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL-IP-YSVT 136 (746)
T ss_pred ccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc-Cc-ccce
Confidence 479999999999999 67899999999999999998888663 35789999999 68888887777665 33 2222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc---CCccEEEEcCccccCChhH--HHHHHhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMS---SNFKIVIADESHFLKNAQA--KRTAATLP 322 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~---~~~~~vIiDEaH~~kn~~s--~~~~~~~~ 322 (666)
...++. ..+. ..........|.+.|++.+......-.. ..|.++|+||||+.....+ .....++.
T Consensus 137 ~~l~~~--~~~~--------~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 137 GQLGDT--VPRS--------NRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLD 206 (746)
T ss_pred eeccCc--cCCC--------chhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHH
Confidence 222211 1111 1112334556889999999876543322 3599999999999865433 22334444
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCC-CCHHHHhhhhhcCcccccccCC--CCHHHHHHHhhhhhhhhehh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVY-KNVHEYGNRYCKGGVFGIYQGA--SNHEELHNLMKATVMIRRLK 399 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~-~~~~~f~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~lrr~k 399 (666)
+-....++|+|||||- ++..+.-+.+.-|...+- .........|............ ........-+. .++++..
T Consensus 207 ~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~--~~i~p~l 283 (746)
T KOG0354|consen 207 LKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG--MIIEPLL 283 (746)
T ss_pred hhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH--HHHHHHH
Confidence 3223448899999997 666666666655544311 0000011111110000000000 00001111111 1222222
Q ss_pred hhhh-hcCCcccEEEEEecCCHHHHHHHHHHHHHH---HH-------HHh---HHHhcCCHH---------H------Hh
Q 005980 400 KDVL-AQLPVKRRQQVFLDVAEKDMRQIYALFREL---EV-------VKG---KIKACKSEE---------E------VQ 450 (666)
Q Consensus 400 ~~v~-~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~---~~-------~~~---~~~~~~~~~---------~------~~ 450 (666)
.... ..+.+.....-..+....+.+ .. ..... .. ... .+..+.... + +.
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAE-KA-AAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHhcCccccccccccccchhhhhh-hh-hccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 2221 111111111000000000000 00 00000 00 000 000000000 0 00
Q ss_pred h-ch-hhH-------HHHHH---hhhcC--CccccHHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHHHHh---CCc
Q 005980 451 S-LK-FTE-------KNLIN---KIYTD--SAEAKIPAVLDYLETVIEA--GCKFLIFAHHQPMLDAIHQLFLK---KKV 511 (666)
Q Consensus 451 ~-~~-~~~-------~~~~~---~~~~~--~~~~Kl~~l~~~l~~~~~~--g~KvlVF~~~~~~~~~l~~~L~~---~g~ 511 (666)
. .. ..+ ....+ .+..+ ...+|+..+.+++.+..+. ..++|||+.++..++.|..+|.. .|+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0 00 000 00000 01111 2368999999999887653 46999999999999999999883 256
Q ss_pred eEEEEEC--------CCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccC
Q 005980 512 HCIRIDG--------GTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 512 ~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
+...+.| +++..+.++++++|++|+ ..+|++|.+|.||||++.|+.||.||..-||...+||+|| +|.-
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~--~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ 518 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE--INVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR 518 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCC--ccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc
Confidence 6666666 477888999999999998 7789999999999999999999999999999999999999 7754
Q ss_pred CCCcEEEEEEEeCCCHHHHHHHHHH-HHHHHHhhhhcC
Q 005980 584 QVSSVNVYYLLANDTVDDIVWDVVR-SKLENLGQVLDG 620 (666)
Q Consensus 584 q~~~V~v~~lv~~~tiee~i~~~~~-~K~~~~~~~l~~ 620 (666)
+. .++.|.+ ..++.-|++.+ .|..++...+.+
T Consensus 519 ns---~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~~ 551 (746)
T KOG0354|consen 519 NS---KCVLLTT--GSEVIEFERNNLAKEKLMNQTISK 551 (746)
T ss_pred CC---eEEEEEc--chhHHHHHHHHHhHHHHHHHHHHH
Confidence 43 3444444 45555555543 333444444443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=3.2e-26 Score=257.04 Aligned_cols=305 Identities=15% Similarity=0.147 Sum_probs=204.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.++|+|.+++..++. |..+++..+||+|||+.++..+.. ..+.+|||+|. +|..+|.+.+... ++. .... .
T Consensus 25 ~~r~~Q~~ai~~il~-g~dvlv~apTGsGKTl~y~lpal~--~~g~tlVisPl~sL~~dqv~~l~~~-gi~---~~~~-~ 96 (607)
T PRK11057 25 QFRPGQQEIIDAVLS-GRDCLVVMPTGGGKSLCYQIPALV--LDGLTLVVSPLISLMKDQVDQLLAN-GVA---AACL-N 96 (607)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHHH--cCCCEEEEecHHHHHHHHHHHHHHc-CCc---EEEE-c
Confidence 689999999998886 678899999999999987654443 34689999999 8899998888764 322 1111 1
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH--HHHHHHhcCCccEEEEcCccccCChhH---HHHHHhhhhhh-
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL--KLQNILMSSNFKIVIADESHFLKNAQA---KRTAATLPIIK- 325 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~--~~~~~l~~~~~~~vIiDEaH~~kn~~s---~~~~~~~~l~~- 325 (666)
................ .....++++|++.+. .....+...++++||+||||.+..++. ..+..+..+..
T Consensus 97 -s~~~~~~~~~~~~~~~----~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 97 -STQTREQQLEVMAGCR----TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred -CCCCHHHHHHHHHHHh----CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 1111110000000000 112346778888876 334455566899999999999875432 11222222211
Q ss_pred -hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 326 -KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 326 -~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
.....++||||+-.....++...+.+-.|..+. .. .
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-------------------------------------~~------~ 208 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-------------------------------------SS------F 208 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-------------------------------------CC------C
Confidence 245679999998544333443333211111000 00 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
.-|.... .+. ....++..+..++.. .
T Consensus 209 ~r~nl~~-~v~---------------------------------------------------~~~~~~~~l~~~l~~--~ 234 (607)
T PRK11057 209 DRPNIRY-TLV---------------------------------------------------EKFKPLDQLMRYVQE--Q 234 (607)
T ss_pred CCCccee-eee---------------------------------------------------eccchHHHHHHHHHh--c
Confidence 0000000 000 000122334445544 4
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.+.||||..+..++.+...|...|+++..+||+++.++|.++.+.|+.+. ..+|++|.++++|||++++++||+++
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~--~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD--LQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCC--CCEEEEechhhccCCCCCcCEEEEeC
Confidence 6789999999999999999999999999999999999999999999999887 56789999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEE
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+|.+...|.|++||++|.|....+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEE
Confidence 9999999999999999999765543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=2.3e-25 Score=250.98 Aligned_cols=306 Identities=17% Similarity=0.173 Sum_probs=206.6
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
..++|+|.+++..++. |..++++.+||+|||+.+...+.. ..+.++||+|. +|+.++.+.+... +++ +..+.
T Consensus 12 ~~fr~~Q~~~i~~il~-g~dvlv~~PTG~GKTl~y~lpal~--~~g~~lVisPl~sL~~dq~~~l~~~-gi~---~~~~~ 84 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD-GRDVLVVMPTGGGKSLCYQVPALL--LKGLTVVISPLISLMKDQVDQLRAA-GVA---AAYLN 84 (591)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCccHhHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHHHHHc-CCc---EEEEe
Confidence 3689999999999887 668999999999999987654443 35789999999 8899998888774 332 11111
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH--HHHHHHhcCCccEEEEcCccccCChhH------HHHHHhhh
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL--KLQNILMSSNFKIVIADESHFLKNAQA------KRTAATLP 322 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~--~~~~~l~~~~~~~vIiDEaH~~kn~~s------~~~~~~~~ 322 (666)
+...... ...+.... ......++++|++.+. .....+...+.++||+||||.+..++. .+...+..
T Consensus 85 s~~~~~~--~~~~~~~l----~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 85 STLSAKE--QQDIEKAL----VNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred CCCCHHH--HHHHHHHH----hCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 1111110 00000000 0112347788888875 233455567899999999999865331 12222222
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v 402 (666)
.. ....+++||||+-.....++...+..-.+..+ .. .
T Consensus 159 ~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-------------------------------------~~----~- 195 (591)
T TIGR01389 159 RF-PQVPRIALTATADAETRQDIRELLRLADANEF-------------------------------------IT----S- 195 (591)
T ss_pred hC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-------------------------------------ec----C-
Confidence 22 23348999999854443344333221111100 00 0
Q ss_pred hhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHH
Q 005980 403 LAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETV 482 (666)
Q Consensus 403 ~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~ 482 (666)
..-|......+. ...+...+.+++..
T Consensus 196 -~~r~nl~~~v~~----------------------------------------------------~~~~~~~l~~~l~~- 221 (591)
T TIGR01389 196 -FDRPNLRFSVVK----------------------------------------------------KNNKQKFLLDYLKK- 221 (591)
T ss_pred -CCCCCcEEEEEe----------------------------------------------------CCCHHHHHHHHHHh-
Confidence 000000000000 01133345555554
Q ss_pred HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE
Q 005980 483 IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562 (666)
Q Consensus 483 ~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~ 562 (666)
..+.+.||||......+.+...|...|+++..+||+++.++|..+.+.|..+. ..+|++|.++|.|||+++++.||+
T Consensus 222 -~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~--~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 222 -HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD--VKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred -cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEechhhccCcCCCCCEEEE
Confidence 24789999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 563 AELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 563 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
+++|.|...|.|++||++|.|....+.+
T Consensus 299 ~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 299 YDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred cCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 9999999999999999999997665543
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=1.5e-24 Score=245.36 Aligned_cols=311 Identities=17% Similarity=0.150 Sum_probs=200.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.++|+|.+++..++. |..+|+..+||.|||+....-+.. ..+.+|||+|. +|+.++...+... +++. ..+..
T Consensus 460 sFRp~Q~eaI~aiL~-GrDVLVimPTGSGKSLcYQLPAL~--~~GiTLVISPLiSLmqDQV~~L~~~-GI~A---a~L~s 532 (1195)
T PLN03137 460 SFRPNQREIINATMS-GYDVFVLMPTGGGKSLTYQLPALI--CPGITLVISPLVSLIQDQIMNLLQA-NIPA---ASLSA 532 (1195)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCccHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhC-CCeE---EEEEC
Confidence 589999999998887 678999999999999987655443 24789999999 7876555555442 2221 11111
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHH---HHHHH---h-cCCccEEEEcCccccCChhHH---HHHH--
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLK---LQNIL---M-SSNFKIVIADESHFLKNAQAK---RTAA-- 319 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~---~~~~l---~-~~~~~~vIiDEaH~~kn~~s~---~~~~-- 319 (666)
... ......++.... .......++++|++.+.. ....+ . ...+.+|||||||.+..++.. -+..
T Consensus 533 ~~s--~~eq~~ilr~l~--s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~ 608 (1195)
T PLN03137 533 GME--WAEQLEILQELS--SEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLG 608 (1195)
T ss_pred CCC--HHHHHHHHHHHH--hcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHH
Confidence 111 110001110000 001234588999988752 12222 1 234789999999998664311 1222
Q ss_pred -hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 320 -TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 320 -~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
+.... ....+++||||.-..-..++...|.+..+..+ +.
T Consensus 609 ~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vf--------------------------------------r~- 648 (1195)
T PLN03137 609 ILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVF--------------------------------------RQ- 648 (1195)
T ss_pred HHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe--------------------------------------ec-
Confidence 22222 34567999999855444444433321111000 00
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
.. .-|..... | ++-.. ..+..+.++
T Consensus 649 --Sf--~RpNL~y~-V-v~k~k-------------------------------------------------k~le~L~~~ 673 (1195)
T PLN03137 649 --SF--NRPNLWYS-V-VPKTK-------------------------------------------------KCLEDIDKF 673 (1195)
T ss_pred --cc--CccceEEE-E-eccch-------------------------------------------------hHHHHHHHH
Confidence 00 00110111 1 10000 001123333
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
+... ..+.+.||||..+..++.+...|...|+++..+||+++..+|..+.++|..+. ..+|++|.++|.|||+++.+
T Consensus 674 I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Ge--i~VLVATdAFGMGIDkPDVR 750 (1195)
T PLN03137 674 IKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDE--INIICATVAFGMGINKPDVR 750 (1195)
T ss_pred HHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCC--CcEEEEechhhcCCCccCCc
Confidence 3321 13567899999999999999999999999999999999999999999999988 56788999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEE
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYY 592 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 592 (666)
.||+|++|.+...|.|++||++|.|....+..|+
T Consensus 751 ~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 751 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999999999887765554
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=2.1e-24 Score=243.38 Aligned_cols=306 Identities=18% Similarity=0.209 Sum_probs=196.8
Q ss_pred hhcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHH-HHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAV-ATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~-~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
..+|.++|.+++..++.. ..+.++..+||+|||++++.. +..+.....++|++|+ .|..|+.+++.++++--.
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 357999999999988753 124588888999999987643 3444556789999999 788999999999985222
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI 323 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 323 (666)
..+..+.++.....+ ....... ......++|+|+..+.... .-.+.++||+||+|++... ....+...
T Consensus 313 i~v~lltg~~~~~~r--~~~~~~i----~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~---qr~~l~~~ 380 (630)
T TIGR00643 313 IEVALLTGSLKGKRR--KELLETI----ASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE---QRKKLREK 380 (630)
T ss_pred cEEEEEecCCCHHHH--HHHHHHH----hCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH---HHHHHHHh
Confidence 233333222111111 0011000 1123458899998775432 2246889999999997432 12222222
Q ss_pred hh--hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 324 IK--KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 324 ~~--~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.. ..++.+++||||++.... +. + ++. +...
T Consensus 381 ~~~~~~~~~l~~SATp~prtl~----l~--~----~~~--------------------------------------l~~~ 412 (630)
T TIGR00643 381 GQGGFTPHVLVMSATPIPRTLA----LT--V----YGD--------------------------------------LDTS 412 (630)
T ss_pred cccCCCCCEEEEeCCCCcHHHH----HH--h----cCC--------------------------------------ccee
Confidence 11 157789999999653211 00 0 000 0000
Q ss_pred hhhcCCccc--EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 402 VLAQLPVKR--RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 402 v~~~lp~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
+...+|..+ .....+... +...+.+.+
T Consensus 413 ~i~~~p~~r~~i~~~~~~~~---------------------------------------------------~~~~~~~~i 441 (630)
T TIGR00643 413 IIDELPPGRKPITTVLIKHD---------------------------------------------------EKDIVYEFI 441 (630)
T ss_pred eeccCCCCCCceEEEEeCcc---------------------------------------------------hHHHHHHHH
Confidence 111222211 111111110 112344455
Q ss_pred HHHHHcCCEEEEEeccH--------HHHHHHHHHHHh--CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 480 ETVIEAGCKFLIFAHHQ--------PMLDAIHQLFLK--KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~--------~~~~~l~~~L~~--~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.+.+.+|++++|||... ..+..+.+.|.. .++++..+||+++.++|.+++++|+++. ..+|++|++++
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~--~~ILVaT~vie 519 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE--VDILVATTVIE 519 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEECceee
Confidence 55556789999999765 234455566654 3788999999999999999999999988 66899999999
Q ss_pred cccCcccCCEEEEecCCC-CcchhhhhhhhhhccCCCCcEE
Q 005980 550 VGLTLTAASTVIFAELSW-TPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+|+|++++++||+++++. +...+.|++||++|-|....+.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 999999999999999874 6778999999999988765544
No 44
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=229.07 Aligned_cols=335 Identities=19% Similarity=0.246 Sum_probs=225.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhcC--------CCCc-EEEEeCC-cchHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCFR--------DVWP-VLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~~--------~~~~-~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
.+.|-|..+.-.++. |..++....||+|||+.-+- ++.++. ..+| +||++|+ .|..|-+.++.++..-
T Consensus 113 ~PtpIQaq~wp~~l~-GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~ 191 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS-GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKS 191 (519)
T ss_pred CCchhhhcccceecc-CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCC
Confidence 567789888888887 67888888899999997542 222221 1345 8999999 8999999999998753
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChh--HHHH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQ--AKRT 317 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~ 317 (666)
.......+ +++..... .......+..|+|+|+..+..+.+ .+...+..++|+|||.++...+ .+.-
T Consensus 192 ~~~~~~cv---yGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~ 261 (519)
T KOG0331|consen 192 LRLRSTCV---YGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIR 261 (519)
T ss_pred CCccEEEE---eCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHH
Confidence 33212222 23332211 112233455689999999987664 3444578899999999997644 3333
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+.+..+-...+..++.|||- +--++.
T Consensus 262 ~Il~~i~~~~rQtlm~saTw------------------------------------------------------p~~v~~ 287 (519)
T KOG0331|consen 262 KILSQIPRPDRQTLMFSATW------------------------------------------------------PKEVRQ 287 (519)
T ss_pred HHHHhcCCCcccEEEEeeec------------------------------------------------------cHHHHH
Confidence 33333312344689999995 111222
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
+..+.+. -| .++...... +...- ..+ ..........+|...|.+
T Consensus 288 lA~~fl~-~~---~~i~ig~~~--~~~a~-~~i-----------------------------~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 288 LAEDFLN-NP---IQINVGNKK--ELKAN-HNI-----------------------------RQIVEVCDETAKLRKLGK 331 (519)
T ss_pred HHHHHhc-Cc---eEEEecchh--hhhhh-cch-----------------------------hhhhhhcCHHHHHHHHHH
Confidence 2222221 11 111111111 10000 000 000011124467778888
Q ss_pred HHHHHH-HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc
Q 005980 478 YLETVI-EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA 556 (666)
Q Consensus 478 ~l~~~~-~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~ 556 (666)
+|.... ..+.|+||||+....++.|...|...++++..|||..++.+|..+++.|++|. .-+|++|++++.|||+++
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~--~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGK--SPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCC--cceEEEcccccccCCCcc
Confidence 888776 45679999999999999999999999999999999999999999999999999 678999999999999999
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 557 a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
.++||+||+|-|...|++|+||.+|.|++-....+.-...-.+.-.++..++++
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988776554433222223344455555443
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=4.1e-24 Score=249.89 Aligned_cols=354 Identities=18% Similarity=0.209 Sum_probs=205.5
Q ss_pred hcCchHHHHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 172 SKLLPFQRDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
..|||||.+||..+.. ..+++|+...||+|||++|++++..+. ...++|++||. .|+.||..+|..+.....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 5799999999987652 245789999999999999998877653 34689999998 799999999988732110
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-------HhcCCccEEEEcCccccCChh---
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-------LMSSNFKIVIADESHFLKNAQ--- 313 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-------l~~~~~~~vIiDEaH~~kn~~--- 313 (666)
..+..+.. ..+ ........+..|+|+|++++.+.... +....|++||+||||+.-...
T Consensus 492 ~~~~~i~~-i~~-----------L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 492 QTFASIYD-IKG-----------LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred cchhhhhc-hhh-----------hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 00000000 000 00011123456899999998764311 223468999999999963100
Q ss_pred -------------HHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCC
Q 005980 314 -------------AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS 380 (666)
Q Consensus 314 -------------s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~ 380 (666)
...++.++... ...+++|||||..+. .++| +. ....|
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t-~~~F-----------G~---pv~~Y------------- 609 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHT-TEIF-----------GE---PVYTY------------- 609 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccch-hHHh-----------CC---eeEEe-------------
Confidence 23344444421 257899999997432 1111 10 00000
Q ss_pred CHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEe----cCC-HHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhh
Q 005980 381 NHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFL----DVA-EKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFT 455 (666)
Q Consensus 381 ~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (666)
.+...+..-+.+ ..-|+........ ... .++...|.....++. ....... ..+.
T Consensus 610 ---sl~eAI~DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~-------~~~l~d~---~~~~ 668 (1123)
T PRK11448 610 ---SYREAVIDGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEID-------LATLEDE---VDFE 668 (1123)
T ss_pred ---eHHHHHhcCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhhhh-------hccCcHH---Hhhh
Confidence 011111111110 0012222221110 011 111111211111100 0000000 0000
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHHHHhC------Cc---eEEEEECCCCHHH
Q 005980 456 EKNLINKIYTDSAEAKIPAVLDYLETVIE--AGCKFLIFAHHQPMLDAIHQLFLKK------KV---HCIRIDGGTPPAS 524 (666)
Q Consensus 456 ~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~--~g~KvlVF~~~~~~~~~l~~~L~~~------g~---~~~~i~G~~~~~~ 524 (666)
...+....+ .....+.+++.+.+.+. .+.|+||||....+++.+.+.|... ++ .+..++|+++ +
T Consensus 669 ~~~~~~~vi---~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~ 743 (1123)
T PRK11448 669 VEDFNRRVI---TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--K 743 (1123)
T ss_pred HHHHHHHHh---hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--c
Confidence 011101111 11223334443333332 3479999999999999888877652 22 4567999986 6
Q ss_pred HHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCC---CCcEEEEEEE
Q 005980 525 RQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ---VSSVNVYYLL 594 (666)
Q Consensus 525 R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~v~~lv 594 (666)
+.+++++|+++.. ..++++++.+++|+|++.+++|||+.++-++..+.|++||+.|... +....||.++
T Consensus 744 ~~~li~~Fk~~~~-p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 744 PDQLIRRFKNERL-PNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hHHHHHHHhCCCC-CeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 7889999998663 4688899999999999999999999999999999999999999865 4456777764
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=2e-24 Score=248.21 Aligned_cols=362 Identities=15% Similarity=0.152 Sum_probs=225.8
Q ss_pred hhcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHHH-HhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVA-TCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~~-~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
..+|.|.|..++..++.. +...+++.+||+|||.+++..+ ..+.....++|+||+ .|..|....+.++++--+
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 457899999999988763 3457888889999999887443 334456789999999 789999999998874222
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI 323 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 323 (666)
..+..+.....+..+. ....... ....+++|+|+..+.+. +.-.+.++||+||+|++.... ...+..
T Consensus 529 i~v~~Lsg~~~~~e~~--~~~~~l~----~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv~~---~~~L~~- 595 (926)
T TIGR00580 529 VTIELLSRFRSAKEQN--EILKELA----SGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGVKQ---KEKLKE- 595 (926)
T ss_pred cEEEEEeccccHHHHH--HHHHHHH----cCCceEEEchHHHhhCC---CCcccCCEEEeecccccchhH---HHHHHh-
Confidence 2222222111111110 0000000 11245889998765322 222367899999999984322 222222
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
......+++|||||++.. +...+..+ .. ...+
T Consensus 596 ~~~~~~vL~~SATpiprt---l~~~l~g~------------------------------------~d-~s~I-------- 627 (926)
T TIGR00580 596 LRTSVDVLTLSATPIPRT---LHMSMSGI------------------------------------RD-LSII-------- 627 (926)
T ss_pred cCCCCCEEEEecCCCHHH---HHHHHhcC------------------------------------CC-cEEE--------
Confidence 224578999999996422 11111000 00 0000
Q ss_pred hcCCcccE---EEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 404 AQLPVKRR---QQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 404 ~~lp~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
..|+..+ .....+.+.. .+.+.+.
T Consensus 628 -~~~p~~R~~V~t~v~~~~~~----------------------------------------------------~i~~~i~ 654 (926)
T TIGR00580 628 -ATPPEDRLPVRTFVMEYDPE----------------------------------------------------LVREAIR 654 (926)
T ss_pred -ecCCCCccceEEEEEecCHH----------------------------------------------------HHHHHHH
Confidence 0111111 1111111110 1112222
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
..+.+|.+++|||+....++.+.+.|.+. ++++..+||+++..+|.+++++|.+++ ..+|+||+++++|+|++.++
T Consensus 655 ~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk--~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 RELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE--FQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC--CCEEEECChhhcccccccCC
Confidence 22346889999999999999999999885 789999999999999999999999998 67899999999999999999
Q ss_pred EEEEecCC-CCcchhhhhhhhhhccCCCCcEEEEEEEeCCC----HHHHHHHHHHHH--------HHHHhhhhcCCcccc
Q 005980 559 TVIFAELS-WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT----VDDIVWDVVRSK--------LENLGQVLDGHENSL 625 (666)
Q Consensus 559 ~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t----iee~i~~~~~~K--------~~~~~~~l~~~~~~~ 625 (666)
+||+++.+ .....+.|++||++|.|... .+|.++..+. ...+-+..+++. ....+--+.|..+.+
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~l 810 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNLL 810 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCCC
Confidence 99999885 45668999999999987543 4455554431 222233333222 122233466666777
Q ss_pred ccccccccCCh---hhHhhHHHHHHhcc
Q 005980 626 EVSSSQIRSSP---AKQKTLDSFLKRCN 650 (666)
Q Consensus 626 ~~~~~~~~~~~---~~~~~l~~~~~~~~ 650 (666)
...++...... -..+.|++.++...
T Consensus 811 G~~QsG~~~~~~~~~~~~~l~~a~~~~~ 838 (926)
T TIGR00580 811 GEEQSGHIESIGFDLYMELLEEAIEELK 838 (926)
T ss_pred CCcccCchhhccHHHHHHHHHHHHHHHh
Confidence 66666543322 14567777777655
No 47
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=215.15 Aligned_cols=325 Identities=16% Similarity=0.193 Sum_probs=226.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHH-HHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQA-IAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i 246 (666)
..+.+-|.+++-.++. |+.+|.+.+||+|||..- |-++..+. .....||++|+ .|..|-...++.....-...+
T Consensus 82 ~~PT~IQ~~aiP~~L~-g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~ 160 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALG-GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRV 160 (476)
T ss_pred CCCchhhhhhcchhhC-CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEE
Confidence 4566779999999998 778999999999999874 34444442 23458999999 677787777887753223333
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhHH-HHHHhhh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQAK-RTAATLP 322 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~ 322 (666)
.+++++ .+.... ........+++|+|+..+.++... +.--....+|+|||.++.+...- ....+.+
T Consensus 161 ~~lvGG---~~m~~q-------~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk 230 (476)
T KOG0330|consen 161 AVLVGG---MDMMLQ-------ANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILK 230 (476)
T ss_pred EEEecC---chHHHH-------HHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHH
Confidence 344332 221111 111223456889999999887663 22234678999999999986642 2233444
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v 402 (666)
.+..-++.++.|||-- . +..+|...
T Consensus 231 ~ip~erqt~LfsATMt-~----------------------------------------kv~kL~ra-------------- 255 (476)
T KOG0330|consen 231 VIPRERQTFLFSATMT-K----------------------------------------KVRKLQRA-------------- 255 (476)
T ss_pred hcCccceEEEEEeecc-h----------------------------------------hhHHHHhh--------------
Confidence 4445677799999961 1 11222211
Q ss_pred hhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHH
Q 005980 403 LAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETV 482 (666)
Q Consensus 403 ~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~ 482 (666)
.+-.. +.|..+.. |. . ...+...+......-|...|+.+|.+.
T Consensus 256 --sl~~p----~~v~~s~k----y~-t--------------------------v~~lkQ~ylfv~~k~K~~yLV~ll~e~ 298 (476)
T KOG0330|consen 256 --SLDNP----VKVAVSSK----YQ-T--------------------------VDHLKQTYLFVPGKDKDTYLVYLLNEL 298 (476)
T ss_pred --ccCCC----eEEeccch----hc-c--------------------------hHHhhhheEeccccccchhHHHHHHhh
Confidence 00000 11111110 00 0 001111222233445777888888874
Q ss_pred HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE
Q 005980 483 IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562 (666)
Q Consensus 483 ~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~ 562 (666)
.|..+||||....+.+.+.-.|...|+.+..++|.+++..|...++.|+++. +-+|++|++++.|||++.+++||+
T Consensus 299 --~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~--r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 299 --AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGA--RSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred --cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccC--CcEEEecchhcccCCCCCceEEEe
Confidence 6899999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred ecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 563 AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 563 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
||.|-+..+|++|.||+.|.| .+-.++.||+. .|-..++++
T Consensus 375 yDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred cCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 999999999999999999999 55567788887 444444443
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=3.7e-24 Score=242.90 Aligned_cols=306 Identities=16% Similarity=0.180 Sum_probs=196.7
Q ss_pred hhhcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCC
Q 005980 170 IESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
+..+|.++|.+++..+... ..+.|+..+||+|||++++..+. .+.....+||++|+ .|..|+.+.+.+++.-.
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3457999999999988753 23568888899999999875543 34556689999999 78999999999988422
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhh
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLP 322 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~ 322 (666)
...+..+.+ +............ .......++|+|+..+.... .-.+.++||+||+|++.. .....+..
T Consensus 338 ~i~v~ll~G--~~~~~~r~~~~~~----l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~ 405 (681)
T PRK10917 338 GIRVALLTG--SLKGKERREILEA----IASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALRE 405 (681)
T ss_pred CcEEEEEcC--CCCHHHHHHHHHH----HhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHh
Confidence 122222222 1111110000000 01113458899988775422 123688999999999832 22222222
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v 402 (666)
. ...++.+++||||++.. +. +.. ++. +. -.+
T Consensus 406 ~-~~~~~iL~~SATp~prt---l~-~~~------~g~-----------------------------~~---------~s~ 436 (681)
T PRK10917 406 K-GENPHVLVMTATPIPRT---LA-MTA------YGD-----------------------------LD---------VSV 436 (681)
T ss_pred c-CCCCCEEEEeCCCCHHH---HH-HHH------cCC-----------------------------Cc---------eEE
Confidence 1 13578899999996321 10 000 000 00 000
Q ss_pred hhcCCccc--EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 403 LAQLPVKR--RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 403 ~~~lp~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
...+|..+ .....+.. .+...+.+.+.
T Consensus 437 i~~~p~~r~~i~~~~~~~---------------------------------------------------~~~~~~~~~i~ 465 (681)
T PRK10917 437 IDELPPGRKPITTVVIPD---------------------------------------------------SRRDEVYERIR 465 (681)
T ss_pred EecCCCCCCCcEEEEeCc---------------------------------------------------ccHHHHHHHHH
Confidence 11222211 11111111 11223445555
Q ss_pred HHHHcCCEEEEEeccHH--------HHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccccc
Q 005980 481 TVIEAGCKFLIFAHHQP--------MLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~--------~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~ 550 (666)
....+|++++|||..++ .+..+.+.|.+. ++++..+||+++..+|.+++++|.+++ ..+|+||+++++
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~--~~ILVaT~vie~ 543 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE--IDILVATTVIEV 543 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEECcceee
Confidence 55578999999998543 234556666655 578999999999999999999999987 678999999999
Q ss_pred ccCcccCCEEEEecCCC-CcchhhhhhhhhhccCCCCcEE
Q 005980 551 GLTLTAASTVIFAELSW-TPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 551 GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
|+|++++++||+++++. ....+.|++||++|.|....+.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 99999999999999875 5688999999999988655443
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=2.5e-23 Score=237.08 Aligned_cols=333 Identities=15% Similarity=0.184 Sum_probs=209.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHH-HHhcC--CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAV-ATCFR--DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~-~~~~~--~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
+|+|||.+++..+++ |..+++.-+||+|||+.++.- +..+. ....+|+++|+ .|..|-..++.++.. . .+.+
T Consensus 36 ~p~~~Q~~ai~~il~-G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~-~--~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELAHA-GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTL-R--GVRP 111 (742)
T ss_pred cCCHHHHHHHHHHHC-CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhcc-C--CeEE
Confidence 689999999998876 778999999999999987543 33332 23469999999 788888888888751 1 2222
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH-------HHHhcCCccEEEEcCccccCCh-hHHHHHH-
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ-------NILMSSNFKIVIADESHFLKNA-QAKRTAA- 319 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~-------~~l~~~~~~~vIiDEaH~~kn~-~s~~~~~- 319 (666)
...+++...... ........++|+|++++.... ..+ -.+.++||+||||.+.+. ++.....
T Consensus 112 ~~~~Gdt~~~~r---------~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~-l~~l~~vViDEah~~~g~fg~~~~~il 181 (742)
T TIGR03817 112 ATYDGDTPTEER---------RWAREHARYVLTNPDMLHRGILPSHARWARF-LRRLRYVVIDECHSYRGVFGSHVALVL 181 (742)
T ss_pred EEEeCCCCHHHH---------HHHhcCCCEEEEChHHHHHhhccchhHHHHH-HhcCCEEEEeChhhccCccHHHHHHHH
Confidence 222111111110 011123468899999986321 111 236789999999999762 2222222
Q ss_pred --hhhhhh---hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhh
Q 005980 320 --TLPIIK---KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394 (666)
Q Consensus 320 --~~~l~~---~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 394 (666)
+..+.. ..++.+++|||. +++.++...+ +. . ++.
T Consensus 182 ~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~l--~g-~------------------------------------~~~ 220 (742)
T TIGR03817 182 RRLRRLCARYGASPVFVLASATT--ADPAAAASRL--IG-A------------------------------------PVV 220 (742)
T ss_pred HHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHHH--cC-C------------------------------------CeE
Confidence 222211 236789999996 3444432111 10 0 000
Q ss_pred hhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHH
Q 005980 395 IRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPA 474 (666)
Q Consensus 395 lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~ 474 (666)
+ ... ...|......+......... .. .. .. .........
T Consensus 221 ~--i~~---~~~~~~~~~~~~~~p~~~~~------~~--------------~~---~~-------------~~r~~~~~~ 259 (742)
T TIGR03817 221 A--VTE---DGSPRGARTVALWEPPLTEL------TG--------------EN---GA-------------PVRRSASAE 259 (742)
T ss_pred E--ECC---CCCCcCceEEEEecCCcccc------cc--------------cc---cc-------------ccccchHHH
Confidence 0 000 01111111111111110000 00 00 00 000001112
Q ss_pred HHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC--------CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 475 VLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK--------KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
..+++..+...+.++||||+.+..++.+...|... +.++..++|+++.++|.++.++|++|. ..+|++|+
T Consensus 260 ~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~--i~vLVaTd 337 (742)
T TIGR03817 260 AADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE--LLGVATTN 337 (742)
T ss_pred HHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC--ceEEEECc
Confidence 33444444456889999999999999999887653 567889999999999999999999998 67899999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 605 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~ 605 (666)
+++.|||++..++||+++.|-+...+.||+||++|.|+... ++.++..+..|..++.
T Consensus 338 ~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 338 ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999987643 3445555667766544
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=2.8e-23 Score=243.75 Aligned_cols=362 Identities=14% Similarity=0.124 Sum_probs=225.6
Q ss_pred hhcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHHH-HhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVA-TCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~~-~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
...+.|.|.+++.-++.. +..+|++.+||+|||.+++.++ ..+.....+||+||+ .|..|....+.++++.-+
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 347999999999988763 3567888999999999877433 233456789999999 678999999988764222
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI 323 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 323 (666)
..+.++.. ..........+.... ....+|+|+|++.+... +.-.++++||+||+|++.... ...+..
T Consensus 678 v~i~~l~g--~~s~~e~~~il~~l~----~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~~~---~e~lk~- 744 (1147)
T PRK10689 678 VRIEMLSR--FRSAKEQTQILAEAA----EGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGVRH---KERIKA- 744 (1147)
T ss_pred ceEEEEEC--CCCHHHHHHHHHHHH----hCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcchhH---HHHHHh-
Confidence 22322221 111111111111000 11345889999876432 112368999999999984322 222222
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
+.....++++||||++.... -.+..+. ...++
T Consensus 745 l~~~~qvLl~SATpiprtl~---l~~~gl~-------------------------------------d~~~I-------- 776 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLN---MAMSGMR-------------------------------------DLSII-------- 776 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHH---HHHhhCC-------------------------------------CcEEE--------
Confidence 23567899999999643211 0010000 00000
Q ss_pred hcCCcccE---EEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 404 AQLPVKRR---QQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 404 ~~lp~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
..|+..+ ........... ....++.
T Consensus 777 -~~~p~~r~~v~~~~~~~~~~~---------------------------------------------------~k~~il~ 804 (1147)
T PRK10689 777 -ATPPARRLAVKTFVREYDSLV---------------------------------------------------VREAILR 804 (1147)
T ss_pred -ecCCCCCCCceEEEEecCcHH---------------------------------------------------HHHHHHH
Confidence 0011100 01111111100 0011122
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
++ .++.+++||++....++.+.+.|.+. +.++..+||+++..+|.+++.+|.++. ..+|++|++++.|||++.++
T Consensus 805 el-~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk--~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 805 EI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR--FNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC--CCEEEECchhhcccccccCC
Confidence 22 35789999999999999999999887 788999999999999999999999998 67899999999999999999
Q ss_pred EEEEecCC-CCcchhhhhhhhhhccCCCCcEEEEEEEeCC-CHHHHHHHHHH-----------HHHHHHhhhhcCCcccc
Q 005980 559 TVIFAELS-WTPGDLIQAEDRAHRIGQVSSVNVYYLLAND-TVDDIVWDVVR-----------SKLENLGQVLDGHENSL 625 (666)
Q Consensus 559 ~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~-tiee~i~~~~~-----------~K~~~~~~~l~~~~~~~ 625 (666)
+||+.++. ++...+.|++||++|.|... .+|.+...+ .+.+.-..+++ -|..+.+.-+.|..+.+
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~ 959 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCC
Confidence 99987664 67788999999999988654 444444332 22222111111 12233344566677777
Q ss_pred ccccccccCChh---hHhhHHHHHHhcc
Q 005980 626 EVSSSQIRSSPA---KQKTLDSFLKRCN 650 (666)
Q Consensus 626 ~~~~~~~~~~~~---~~~~l~~~~~~~~ 650 (666)
...++..-.... ..+.|++.+....
T Consensus 960 g~~q~g~~~~~g~~~y~~~l~~~~~~~~ 987 (1147)
T PRK10689 960 GEEQSGQMETIGFSLYMELLENAVDALK 987 (1147)
T ss_pred CCccCCCccccCHHHHHHHHHHHHHHHh
Confidence 777666554443 5677888877655
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.92 E-value=4.9e-23 Score=239.39 Aligned_cols=327 Identities=18% Similarity=0.129 Sum_probs=200.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC---------CCCcEEEEeCC-cchHHHHHHHH-----
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR---------DVWPVLILTPS-SLRLHWAAMIQ----- 236 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~---------~~~~~LIv~P~-sl~~qW~~e~~----- 236 (666)
.|+|+|.+++..+++ |.++|+..+||+|||+.++..+. .+. ....+|+|+|+ .|..|+.+.+.
T Consensus 32 ~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 32 TFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 589999999998765 77899999999999998764332 221 12349999999 78887766443
Q ss_pred --HHh---cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H--hcCCccEEEEcCcc
Q 005980 237 --QWL---NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L--MSSNFKIVIADESH 307 (666)
Q Consensus 237 --~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l--~~~~~~~vIiDEaH 307 (666)
+++ +.....+.+...+++....... .......+|+|+|++.+...... + .-.+.++||+||+|
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--------~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQ--------KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--------HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechh
Confidence 332 2221122222222221111100 01112356899999998643321 1 11367899999999
Q ss_pred ccCChh--HHHHHH---hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCH
Q 005980 308 FLKNAQ--AKRTAA---TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNH 382 (666)
Q Consensus 308 ~~kn~~--s~~~~~---~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 382 (666)
.+.+.. ...... +..+.....++++||||. +++.++...+ ...... ...
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~~L---~~~~~~---------~~~------------ 236 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAKFL---VGYEDD---------GEP------------ 236 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHHHh---cCcccc---------CCC------------
Confidence 997532 211112 222222456789999997 3344443222 111000 000
Q ss_pred HHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHh
Q 005980 383 EELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINK 462 (666)
Q Consensus 383 ~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (666)
.++.+.. ..........+.++.....
T Consensus 237 --------r~~~iv~------~~~~k~~~i~v~~p~~~l~---------------------------------------- 262 (876)
T PRK13767 237 --------RDCEIVD------ARFVKPFDIKVISPVDDLI---------------------------------------- 262 (876)
T ss_pred --------CceEEEc------cCCCccceEEEeccCcccc----------------------------------------
Confidence 0000000 0000000011111100000
Q ss_pred hhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC------CceEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK------KVHCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 463 ~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~------g~~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
..........+.+.+......++++||||+.+..++.+...|... +..+..+||+++.++|..+.+.|++|.
T Consensus 263 --~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~ 340 (876)
T PRK13767 263 --HTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE 340 (876)
T ss_pred --ccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC
Confidence 000001122344555555567889999999999999999988773 467899999999999999999999998
Q ss_pred CceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhcc-CCCCcEEEEE
Q 005980 537 DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRI-GQVSSVNVYY 592 (666)
Q Consensus 537 ~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~-Gq~~~V~v~~ 592 (666)
..+|+||.+++.|||++.+++||++++|.+...+.||+||++|. |....-.++-
T Consensus 341 --i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 341 --LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred --CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 67899999999999999999999999999999999999999986 4444444443
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.91 E-value=1.8e-22 Score=232.44 Aligned_cols=317 Identities=18% Similarity=0.192 Sum_probs=202.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.+|+|+|.+++...+..|.+++++.+||+|||+.+. +++..+...+++|+|+|+ +|+.|+.+++.++... ...+...
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~~~ 100 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVGIS 100 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 369999999999867668899999999999999985 445555567889999999 8999999999987432 1222222
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhhh-h--
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATLP-I-- 323 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~-l-- 323 (666)
.++.. .. .......+|+|+|++.+...... ..-.++++||+||+|.+.+.... ....+.. +
T Consensus 101 tGd~~--~~-----------~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~ 167 (737)
T PRK02362 101 TGDYD--SR-----------DEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR 167 (737)
T ss_pred eCCcC--cc-----------ccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh
Confidence 21111 10 01112346899999887654331 11135799999999999754321 1222111 1
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
.....+.++||||+ .++.++...+ +...+.. .|
T Consensus 168 ~~~~~qii~lSATl--~n~~~la~wl---~~~~~~~------~~------------------------------------ 200 (737)
T PRK02362 168 LNPDLQVVALSATI--GNADELADWL---DAELVDS------EW------------------------------------ 200 (737)
T ss_pred cCCCCcEEEEcccC--CCHHHHHHHh---CCCcccC------CC------------------------------------
Confidence 11346789999997 3455554332 2211100 00
Q ss_pred hcCCcccEEEEEe----cCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 404 AQLPVKRRQQVFL----DVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 404 ~~lp~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
-|......+.. .....+. .. ....+ ......+
T Consensus 201 --rpv~l~~~v~~~~~~~~~~~~~---------------------------------------~~--~~~~~-~~~~~~~ 236 (737)
T PRK02362 201 --RPIDLREGVFYGGAIHFDDSQR---------------------------------------EV--EVPSK-DDTLNLV 236 (737)
T ss_pred --CCCCCeeeEecCCeeccccccc---------------------------------------cC--CCccc-hHHHHHH
Confidence 00000011100 0000000 00 00001 1223333
Q ss_pred HHHHHcCCEEEEEeccHHHHHHHHHHHHhC------------------------------------CceEEEEECCCCHH
Q 005980 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKK------------------------------------KVHCIRIDGGTPPA 523 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~------------------------------------g~~~~~i~G~~~~~ 523 (666)
.+....+.++||||+.+..+..+...|... ...+...||+++..
T Consensus 237 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~ 316 (737)
T PRK02362 237 LDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSRE 316 (737)
T ss_pred HHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHH
Confidence 334457889999999998877766655432 12578899999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE----ec-----CCCCcchhhhhhhhhhccCCCCcEEEEEEE
Q 005980 524 SRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AE-----LSWTPGDLIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 524 ~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
+|..+.+.|++|. ..+|++|.+++.|+|+++.++||. || .+.+...+.|++||++|.|....-.++-++
T Consensus 317 eR~~ve~~Fr~G~--i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 317 HRELVEDAFRDRL--IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHHHHHHHHHcCC--CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 9999999999987 778999999999999999988886 66 467888999999999999987544444444
Q ss_pred e
Q 005980 595 A 595 (666)
Q Consensus 595 ~ 595 (666)
.
T Consensus 395 ~ 395 (737)
T PRK02362 395 K 395 (737)
T ss_pred c
Confidence 3
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-22 Score=220.68 Aligned_cols=332 Identities=18% Similarity=0.254 Sum_probs=224.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhcC--C--CCc-EEEEeCC-cchHHHHHHHHHHhcCC-CC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCFR--D--VWP-VLILTPS-SLRLHWAAMIQQWLNIP-PS 244 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~~--~--~~~-~LIv~P~-sl~~qW~~e~~~~~~~~-~~ 244 (666)
.+.|.|..++-.++. |..++....||+|||..-+ -++..+. . ..+ .||++|+ .|..|-.+++.++.... ..
T Consensus 51 ~pt~IQ~~~IP~~l~-g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 51 EPTPIQLAAIPLILA-GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 577899999999988 6789999999999998743 3333333 1 112 8999999 88999999998887533 23
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHH-HHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAK-RTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~ 321 (666)
.+..++++ ......... .....+++|.|+..+..+.. .+...+..++|+|||..+.+.+.. ....+.
T Consensus 130 ~~~~i~GG--~~~~~q~~~--------l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~ 199 (513)
T COG0513 130 RVAVVYGG--VSIRKQIEA--------LKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKIL 199 (513)
T ss_pred cEEEEECC--CCHHHHHHH--------HhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHH
Confidence 33333322 111111110 11135689999999886554 234456789999999999887543 333444
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
..+....+.++.|||.-. ...+ +...| +..+..+..-.+.
T Consensus 200 ~~~p~~~qtllfSAT~~~-~i~~------------------l~~~~---------------------l~~p~~i~v~~~~ 239 (513)
T COG0513 200 KALPPDRQTLLFSATMPD-DIRE------------------LARRY---------------------LNDPVEIEVSVEK 239 (513)
T ss_pred HhCCcccEEEEEecCCCH-HHHH------------------HHHHH---------------------ccCCcEEEEcccc
Confidence 444455788999999721 1111 11111 1111111111000
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
.. .-+....+ .++..... ..|+..|..++..
T Consensus 240 ~~-~~~~~i~q-~~~~v~~~-----------------------------------------------~~k~~~L~~ll~~ 270 (513)
T COG0513 240 LE-RTLKKIKQ-FYLEVESE-----------------------------------------------EEKLELLLKLLKD 270 (513)
T ss_pred cc-ccccCceE-EEEEeCCH-----------------------------------------------HHHHHHHHHHHhc
Confidence 00 01111111 11111111 1266667777766
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
. ...++||||.....++.|...|...|+++..|||++++.+|.+.++.|+++. ..+|++|+++++|||++..++||
T Consensus 271 ~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~--~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 271 E--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGE--LRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred C--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCC--CCEEEEechhhccCCccccceeE
Confidence 3 4558999999999999999999999999999999999999999999999887 67899999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 005980 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611 (666)
Q Consensus 562 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~ 611 (666)
+||+|.++..|++|+||.+|.|.+- ..+.|+++ .-|...+..+++..
T Consensus 347 nyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~~ 393 (513)
T COG0513 347 NYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKRL 393 (513)
T ss_pred EccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHHH
Confidence 9999999999999999999999443 44566665 23556666665553
No 54
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.89 E-value=3e-22 Score=205.41 Aligned_cols=326 Identities=18% Similarity=0.236 Sum_probs=228.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-H-hcCCCC------cEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-T-CFRDVW------PVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~-~~~~~~------~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
.+..-|+.++-.+++ |..+|-|.-||+|||+..+--. . .++..| -+|||.|+ .|..|--+-+.+-.....
T Consensus 91 ~~teiQ~~~Ip~aL~-G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ-GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred cHHHHHHhhcchhcc-CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 566789999999998 7788889999999998755322 2 223333 48999999 787776666665432211
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhHH-HHHH
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQAK-RTAA 319 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s~-~~~~ 319 (666)
.....+++ |.+-.. ...-...-.+.|||+..+..+++. +.-.+..++|+|||.++...+.+ ...+
T Consensus 170 fSaGLiiG---G~~~k~--------E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~ 238 (758)
T KOG0343|consen 170 FSAGLIIG---GKDVKF--------ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNA 238 (758)
T ss_pred cccceeec---CchhHH--------HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHH
Confidence 11122222 211100 000012234789999999988764 33446789999999999887654 4455
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHH-hhhhhhhheh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL-MKATVMIRRL 398 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~lrr~ 398 (666)
+..-++..+..+++|||+-. +..+| .++ ++.+
T Consensus 239 Ii~~lP~~RQTLLFSATqt~-svkdL----------------------------------------aRLsL~dP------ 271 (758)
T KOG0343|consen 239 IIENLPKKRQTLLFSATQTK-SVKDL----------------------------------------ARLSLKDP------ 271 (758)
T ss_pred HHHhCChhheeeeeecccch-hHHHH----------------------------------------HHhhcCCC------
Confidence 66666678899999999932 22222 211 1111
Q ss_pred hhhhhhcCCcccEEEEE---ecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHH
Q 005980 399 KKDVLAQLPVKRRQQVF---LDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV 475 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l 475 (666)
.+..+. +.-+|....++ ++......|+..|
T Consensus 272 -----------~~vsvhe~a~~atP~~L~Q~------------------------------------y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 272 -----------VYVSVHENAVAATPSNLQQS------------------------------------YVIVPLEDKIDML 304 (758)
T ss_pred -----------cEEEEeccccccChhhhhhe------------------------------------EEEEehhhHHHHH
Confidence 111111 11122221111 1122233589999
Q ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccC
Q 005980 476 LDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 476 ~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gln 553 (666)
..+|.. +...|.|||......+..++..+.+. |++...++|.+++..|.++.++|.... .++|+||++++.|||
T Consensus 305 ~sFI~s--hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 305 WSFIKS--HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLD 380 (758)
T ss_pred HHHHHh--ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhhhccCC
Confidence 999998 46789999999999999999999886 999999999999999999999999877 789999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 005980 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611 (666)
Q Consensus 554 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~ 611 (666)
+++.+.||.+|.|-+...|++|.||..|++......++- ..+=+|.|...+++|.
T Consensus 381 FpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 381 FPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLKKLQKKK 435 (758)
T ss_pred CcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHHHHHHcC
Confidence 999999999999999999999999999998776654432 2335688888888774
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.89 E-value=9e-22 Score=209.14 Aligned_cols=316 Identities=18% Similarity=0.165 Sum_probs=187.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCC-------CCCccc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLG-------GSNRSG 260 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~-------~~~~~~ 260 (666)
+++..+||+|||.+++..+... ....++++++|. +++.|+.+.+..+++. .+....+... +.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEF 78 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhH
Confidence 5778889999999988776643 235689999999 8999999999998752 1111111000 000000
Q ss_pred eeEEec-CCCCCCCCCCcEEEEeHHHHHHHHHH--------HhcCCccEEEEcCccccCChhHHHHHHhhhhhh-hcceE
Q 005980 261 FTIVSS-NTKRNIPLDGLFNIISYDVVLKLQNI--------LMSSNFKIVIADESHFLKNAQAKRTAATLPIIK-KAQYA 330 (666)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~v~I~sy~~l~~~~~~--------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~-~~~~~ 330 (666)
...... ...........++++|++.+...... +.....++||+||+|.+..........+...+. ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~ 158 (358)
T TIGR01587 79 EHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPI 158 (358)
T ss_pred HHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 000000 00001112345889999987644322 222344799999999997643333333333332 34567
Q ss_pred EEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCccc
Q 005980 331 LLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKR 410 (666)
Q Consensus 331 llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~ 410 (666)
+++|||+- ..+- +|...+..... .... +. .......
T Consensus 159 i~~SATlp----~~l~---------------~~~~~~~~~~~-------------------~~~~-----~~-~~~~~~~ 194 (358)
T TIGR01587 159 LLMSATLP----KFLK---------------EYAEKIGYVEF-------------------NEPL-----DL-KEERRFE 194 (358)
T ss_pred EEEecCch----HHHH---------------HHHhcCCCccc-------------------ccCC-----CC-ccccccc
Confidence 99999972 1111 01000000000 0000 00 0000000
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEE
Q 005980 411 RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFL 490 (666)
Q Consensus 411 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~Kvl 490 (666)
++.+... ......|...+.+++.. ...+.++|
T Consensus 195 ~~~~~~~-----------------------------------------------~~~~~~~~~~l~~l~~~-~~~~~~~l 226 (358)
T TIGR01587 195 RHRFIKI-----------------------------------------------ESDKVGEISSLERLLEF-IKKGGKIA 226 (358)
T ss_pred cccceee-----------------------------------------------ccccccCHHHHHHHHHH-hhCCCeEE
Confidence 0000000 00111244444444433 35688999
Q ss_pred EEeccHHHHHHHHHHHHhCCc--eEEEEECCCCHHHHHH----HHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 491 IFAHHQPMLDAIHQLFLKKKV--HCIRIDGGTPPASRQA----LVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 491 VF~~~~~~~~~l~~~L~~~g~--~~~~i~G~~~~~~R~~----~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
||++....++.+...|.+.+. .+..+||+++..+|.+ +++.|+++. ..+|++|+++++|+|+. ++.||.+.
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~--~~ilvaT~~~~~GiDi~-~~~vi~~~ 303 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE--KFVIVATQVIEASLDIS-ADVMITEL 303 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC--CeEEEECcchhceeccC-CCEEEEcC
Confidence 999999999999999988766 5999999999999976 489999877 56899999999999995 78888876
Q ss_pred CCCCcchhhhhhhhhhccCCCC----cEEEEEEEeCC---CHHHHHHHHH
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVS----SVNVYYLLAND---TVDDIVWDVV 607 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~----~V~v~~lv~~~---tiee~i~~~~ 607 (666)
.+ +..+.||+||++|.|.+. .|.||+....+ ..+..++++-
T Consensus 304 ~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t 351 (358)
T TIGR01587 304 AP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERT 351 (358)
T ss_pred CC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHH
Confidence 65 789999999999999763 45565555444 3344444433
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.89 E-value=2.4e-21 Score=222.71 Aligned_cols=316 Identities=17% Similarity=0.136 Sum_probs=194.6
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
..|+|+|.+++...+..|.+++++.+||+|||+.+. +++..+ ....++|+|+|. +|+.|+.+++.+|.... ..+..
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g-~~v~~ 100 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLG-LRVAM 100 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcC-CEEEE
Confidence 468999999998766668899999999999999984 444443 346789999999 88999999998864321 12222
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPIIK 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~ 325 (666)
..++.. .. .......+++|+|++.+...... ..-.+.++||+||+|.+.+... .....+...+.
T Consensus 101 ~~Gd~~--~~-----------~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~ 167 (720)
T PRK00254 101 TTGDYD--ST-----------DEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML 167 (720)
T ss_pred EeCCCC--Cc-----------hhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC
Confidence 222111 10 01112346889999887654321 0113678999999999965321 12222222223
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ 405 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~ 405 (666)
...++++||||+ .++.++... +....+.. . .
T Consensus 168 ~~~qiI~lSATl--~n~~~la~w---l~~~~~~~------~--------------------------------------~ 198 (720)
T PRK00254 168 GRAQILGLSATV--GNAEELAEW---LNAELVVS------D--------------------------------------W 198 (720)
T ss_pred cCCcEEEEEccC--CCHHHHHHH---hCCccccC------C--------------------------------------C
Confidence 557889999998 335555432 22211100 0 0
Q ss_pred CCcccEEEEEec----CCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 406 LPVKRRQQVFLD----VAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 406 lp~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
-|......+... ........ ........+.+
T Consensus 199 rpv~l~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~ 233 (720)
T PRK00254 199 RPVKLRKGVFYQGFLFWEDGKIER---------------------------------------------FPNSWESLVYD 233 (720)
T ss_pred CCCcceeeEecCCeeeccCcchhc---------------------------------------------chHHHHHHHHH
Confidence 000000000000 00000000 00111223334
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHh---------------------------------CCceEEEEECCCCHHHHHHH
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLK---------------------------------KKVHCIRIDGGTPPASRQAL 528 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~---------------------------------~g~~~~~i~G~~~~~~R~~~ 528 (666)
.+..+.++|||++.+..+..+...|.. .+..+..+||+++.++|..+
T Consensus 234 ~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~v 313 (720)
T PRK00254 234 AVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLI 313 (720)
T ss_pred HHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHH
Confidence 445688999999988776554433321 12357889999999999999
Q ss_pred HHHhcCCCCceEEEEeccccccccCcccCCEEEE-------ecCCC-CcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 529 VTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF-------AELSW-TPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 529 i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~-------~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
.+.|++|. ..+|++|.+++.|+|+++.++||. ++.+. ....+.|++||++|.|..+.-.++.++..+
T Consensus 314 e~~F~~G~--i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 314 EDAFREGL--IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHHHHCCC--CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 99999987 678999999999999999888874 22222 345789999999999876655555555443
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.89 E-value=7.8e-21 Score=217.50 Aligned_cols=305 Identities=16% Similarity=0.223 Sum_probs=189.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
+|+|+|.+++..+. .+.+++++.+||+|||+++...+ ..+...+++++|+|. +|..|+.+++.++.... ..+....
T Consensus 22 ~l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~ 99 (674)
T PRK01172 22 ELYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLG-MRVKISI 99 (674)
T ss_pred CCCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcC-CeEEEEe
Confidence 58999999999864 47789999999999999876544 334456789999999 89999999998865321 1222222
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhhh---hh
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATLP---II 324 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~---l~ 324 (666)
+... .. .......+++|+|++.+...... ..-.++++||+||+|.+.+.... ....+.. ..
T Consensus 100 G~~~--~~-----------~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 100 GDYD--DP-----------PDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred CCCC--CC-----------hhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 1111 00 01112346889999876544321 11236899999999999653211 2222221 11
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.++||||+ .+..++.. +++...+.. . .|
T Consensus 167 ~~~~riI~lSATl--~n~~~la~---wl~~~~~~~------~----------------------------~r-------- 199 (674)
T PRK01172 167 NPDARILALSATV--SNANELAQ---WLNASLIKS------N----------------------------FR-------- 199 (674)
T ss_pred CcCCcEEEEeCcc--CCHHHHHH---HhCCCccCC------C----------------------------CC--------
Confidence 2346789999997 23444322 222211100 0 00
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
..|. .....+.. .. +. +........+..++.+...
T Consensus 200 ~vpl-~~~i~~~~--~~----~~--------------------------------------~~~~~~~~~~~~~i~~~~~ 234 (674)
T PRK01172 200 PVPL-KLGILYRK--RL----IL--------------------------------------DGYERSQVDINSLIKETVN 234 (674)
T ss_pred CCCe-EEEEEecC--ee----ee--------------------------------------cccccccccHHHHHHHHHh
Confidence 0000 00000000 00 00 0000000012334444446
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhC-------------------------CceEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKK-------------------------KVHCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~-------------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
.++++|||++.+...+.+...|... ...+..+||+++..+|..+.+.|++|. .
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~--i 312 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY--I 312 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC--C
Confidence 7889999999998887777766542 013677899999999999999999887 6
Q ss_pred EEEEeccccccccCcccCCEEEEecC---------CCCcchhhhhhhhhhccCCCCc
Q 005980 540 AAVLSMKAGGVGLTLTAASTVIFAEL---------SWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 540 v~L~st~a~~~GlnL~~a~~VI~~d~---------~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
.+|++|.+++.|+|+++ ..||+.+. +.++..+.|++||++|.|....
T Consensus 313 ~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 313 KVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred eEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 78999999999999997 56676653 3567788999999999997654
No 58
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.5e-22 Score=188.37 Aligned_cols=312 Identities=17% Similarity=0.238 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHH-HHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQ-AIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~-ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
-|..|+-.+++ |..+|.-...|.|||.+ +++++.... +.-.+||+.|+ .|..|-..-+....+.-...+....+
T Consensus 53 IQqrAi~~Ilk-GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 53 IQQRAIPQILK-GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred HHhhhhhhhhc-ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 48999988887 77888889999999976 344444332 24569999999 67777666666554322222333322
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhH--HHHHHhhhhhhhc
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQA--KRTAATLPIIKKA 327 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s--~~~~~~~~l~~~~ 327 (666)
+..-.++. .....+..++..|+..+..... .+.-....++|+|||..+.|.+. +.+. +.+.++..
T Consensus 132 --g~n~gedi--------kkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd-iyr~lp~~ 200 (400)
T KOG0328|consen 132 --GKNLGEDI--------KKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYD-IYRYLPPG 200 (400)
T ss_pred --CCccchhh--------hhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHH-HHHhCCCC
Confidence 11111111 1122345677888888776554 34445688999999999977543 3333 44445578
Q ss_pred ceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCC
Q 005980 328 QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLP 407 (666)
Q Consensus 328 ~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp 407 (666)
..++++|||- |.|+..+.+...++.
T Consensus 201 ~Qvv~~SATl----p~eilemt~kfmtdp--------------------------------------------------- 225 (400)
T KOG0328|consen 201 AQVVLVSATL----PHEILEMTEKFMTDP--------------------------------------------------- 225 (400)
T ss_pred ceEEEEeccC----cHHHHHHHHHhcCCc---------------------------------------------------
Confidence 8999999996 233333322222221
Q ss_pred cccEEEEE-ecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 408 VKRRQQVF-LDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 408 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
.+..+. -+++.+-.++|+-.. +...-|...|+++-..+ .-
T Consensus 226 --vrilvkrdeltlEgIKqf~v~v-----------------------------------e~EewKfdtLcdLYd~L--tI 266 (400)
T KOG0328|consen 226 --VRILVKRDELTLEGIKQFFVAV-----------------------------------EKEEWKFDTLCDLYDTL--TI 266 (400)
T ss_pred --eeEEEecCCCchhhhhhheeee-----------------------------------chhhhhHhHHHHHhhhh--eh
Confidence 111000 011111111111100 01122666677766654 45
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
...+|||+.....++|.+.++...+.+..+||.++.++|.+++++|+.+. -.+|++|++-+.|+|+|..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~--SrvLitTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK--SRVLITTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC--ceEEEEechhhccCCcceeEEEEecCCC
Confidence 68999999999999999999999999999999999999999999999998 4578999999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 567 WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 567 wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
-|+..|++|+||.+|.|.+. .+.+|+..+.
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 99999999999999999654 3456666543
No 59
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=4.8e-21 Score=204.87 Aligned_cols=306 Identities=17% Similarity=0.236 Sum_probs=205.8
Q ss_pred hhhcCchHHHHHHHHHHHc------CCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCCc-chHHHHHHHHHHhcC
Q 005980 170 IESKLLPFQRDGVRFALQH------GGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPSS-LRLHWAAMIQQWLNI 241 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~------~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~s-l~~qW~~e~~~~~~~ 241 (666)
+..+|...|+.+++-+..- -.| +|-.|+|+|||++|+..+. .+.....+.+.+|+. |..|-...+.+|++-
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~R-LlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNR-LLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHH-HhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 3457889999999977531 113 6666699999999865444 455677899999996 568889999999952
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhh
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATL 321 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 321 (666)
-...+....+...+..+.. +...... ...+++|-|+..+...... .+.++||+||-|++.-. +-..+.
T Consensus 338 ~~i~V~lLtG~~kgk~r~~--~l~~l~~----G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~---QR~~L~ 405 (677)
T COG1200 338 LGIRVALLTGSLKGKARKE--ILEQLAS----GEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVH---QRLALR 405 (677)
T ss_pred cCCeEEEeecccchhHHHH--HHHHHhC----CCCCEEEEcchhhhcceee---cceeEEEEeccccccHH---HHHHHH
Confidence 2223333333333333221 1111111 2345889998887655432 36789999999999553 223333
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
..-...++.+.|||||++-.+.= ...-.+.-.
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTLAl------------------------------------------------t~fgDldvS 437 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTLAL------------------------------------------------TAFGDLDVS 437 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHHHH------------------------------------------------HHhccccch
Confidence 32111579999999998654310 000011122
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
+..++|+.+.-+...-+..+ +...+++.+..
T Consensus 438 ~IdElP~GRkpI~T~~i~~~-------------------------------------------------~~~~v~e~i~~ 468 (677)
T COG1200 438 IIDELPPGRKPITTVVIPHE-------------------------------------------------RRPEVYERIRE 468 (677)
T ss_pred hhccCCCCCCceEEEEeccc-------------------------------------------------cHHHHHHHHHH
Confidence 34688886544333322222 33345566666
Q ss_pred HHHcCCEEEEEeccHHHH--------HHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccc
Q 005980 482 VIEAGCKFLIFAHHQPML--------DAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~--------~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~G 551 (666)
...+|+++.+.|.-++.- ..+...|+.. ++++..+||.++.+++++++.+|++++ ..+|+||.+..+|
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e--~~ILVaTTVIEVG 546 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE--IDILVATTVIEVG 546 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC--CcEEEEeeEEEec
Confidence 667899999998776543 3455556543 667999999999999999999999998 7789999999999
Q ss_pred cCcccCCEEEEecCC-CCcchhhhhhhhhhccCCCCc
Q 005980 552 LTLTAASTVIFAELS-WTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 552 lnL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
+|+++|+.+|+.++. +--+++-|-.||++|-+..+-
T Consensus 547 VdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 547 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred ccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 999999999999865 567889999999999554443
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=4.6e-20 Score=206.42 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=88.0
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHH-----HHHHHhcC----CC-----CceEEEEeccccc
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQ-----ALVTEFQE----KD-----DVKAAVLSMKAGG 549 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~-----~~i~~F~~----~~-----~~~v~L~st~a~~ 549 (666)
+.+.++||||+.+..++.+.+.|.+.++ ..+||.+++.+|. .++++|++ +. ....+|++|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4678999999999999999999999887 8999999999999 78999986 32 1146799999999
Q ss_pred cccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCc--EEEEEE
Q 005980 550 VGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS--VNVYYL 593 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~--V~v~~l 593 (666)
.|||+.. ++||+...|+ ..|+||+||++|.|.... ++++.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999986 8888876664 789999999999998643 444433
No 61
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=190.61 Aligned_cols=310 Identities=17% Similarity=0.234 Sum_probs=202.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH----HHHHhcC--------CCC-cEEEEeCC-cchHHHHHHHHHH
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI----AVATCFR--------DVW-PVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al----a~~~~~~--------~~~-~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
.+-|-|+.++--+++ ++..|...++|+|||...+ ..|..+. ..+ ..+|++|+ .|..|-.+|-.+|
T Consensus 267 eptpIqR~aipl~lQ-~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ-NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCchHHHhhccchhc-cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 567889999987777 4577888899999995432 2222221 123 37999999 7888888998888
Q ss_pred hcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhH--
Q 005980 239 LNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQA-- 314 (666)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s-- 314 (666)
...-...++.++++. .....++ .....+.++|.|+..+..... .|...+...||+|||.++-..+.
T Consensus 346 ~~~lg~r~vsvigg~-s~EEq~f---------qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~ 415 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGL-SFEEQGF---------QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP 415 (673)
T ss_pred cccccceEEEEeccc-chhhhhh---------hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH
Confidence 754344444443321 1111111 233456788999988764432 33445678999999998854221
Q ss_pred HHHHH---------------------hhhhhhhc---ceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcC
Q 005980 315 KRTAA---------------------TLPIIKKA---QYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKG 370 (666)
Q Consensus 315 ~~~~~---------------------~~~l~~~~---~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~ 370 (666)
...+. ++.....+ ...+++|||--
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~-------------------------------- 463 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMP-------------------------------- 463 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCC--------------------------------
Confidence 11111 11100001 12244555420
Q ss_pred cccccccCCCCHHHH-HHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHH
Q 005980 371 GVFGIYQGASNHEEL-HNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEV 449 (666)
Q Consensus 371 ~~~~~~~~~~~~~~l-~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (666)
...+.| ..++..++++.- ... ..-.+...+.
T Consensus 464 ---------p~verlar~ylr~pv~vti--g~~-gk~~~rveQ~------------------------------------ 495 (673)
T KOG0333|consen 464 ---------PAVERLARSYLRRPVVVTI--GSA-GKPTPRVEQK------------------------------------ 495 (673)
T ss_pred ---------hHHHHHHHHHhhCCeEEEe--ccC-CCCccchheE------------------------------------
Confidence 000010 011111111100 000 0001111111
Q ss_pred hhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHH
Q 005980 450 QSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALV 529 (666)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i 529 (666)
.+..+.+.|...|+++|... ....+|||.+....++.|.+.|.+.|+.+..+||+-+.++|..++
T Consensus 496 -------------v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 496 -------------VEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred -------------EEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 11223345677888888873 578999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 530 TEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 530 ~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
..|+++. .-+|++|+++|.|||+++.++||+||...+..+|.+||||.+|-|+.-.+.-
T Consensus 561 ~~fr~~t--~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 561 ADFREGT--GDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred HHHHhcC--CCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 9999987 5689999999999999999999999999999999999999999998766543
No 62
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=4.4e-20 Score=204.52 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+.+....+.++||||......+.+...|.+.|+++..++|.+...+|..+..+|+.+ .++++|+.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC----eEEEEccc
Confidence 34699999999998878899999999999999999999999999999999999988887776666555 36899999
Q ss_pred cccccCcc---------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 548 GGVGLTLT---------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 548 ~~~GlnL~---------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
+|.|+|++ +.++|+.++++-+... .|+.||++|.|..-.+
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999999 8899999999976655 9999999999977553
No 63
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=1.4e-19 Score=204.64 Aligned_cols=360 Identities=14% Similarity=0.078 Sum_probs=198.0
Q ss_pred hhcCchHHHHHHHHHHHc---------CCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHH
Q 005980 171 ESKLLPFQRDGVRFALQH---------GGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQ 237 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~---------~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~ 237 (666)
+..+++||..||+.++.+ .+++++.+.+|+|||++++.++..+. ...++|||||. .|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 445899999999987532 24789999999999999998887653 35679999999 899999999999
Q ss_pred HhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-HHhcC---Cc-cEEEEcCccccCCh
Q 005980 238 WLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-ILMSS---NF-KIVIADESHFLKNA 312 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-~l~~~---~~-~~vIiDEaH~~kn~ 312 (666)
+..... ... . ..... .......+..++|+|++.+..... .+... .. .+||+||||+....
T Consensus 316 ~~~~~~---~~~-----~-s~~~L------~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~ 380 (667)
T TIGR00348 316 LQKDCA---ERI-----E-SIAEL------KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG 380 (667)
T ss_pred hCCCCC---ccc-----C-CHHHH------HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch
Confidence 863110 000 0 00000 000001235588999999985322 22111 22 38999999998654
Q ss_pred hHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhh
Q 005980 313 QAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKAT 392 (666)
Q Consensus 313 ~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 392 (666)
+.. ..+...+ ...++++|||||....-.+ .+..|+..|... ...+ .+...+...
T Consensus 381 ~~~--~~l~~~~-p~a~~lGfTaTP~~~~d~~--------------t~~~f~~~fg~~--i~~Y-------~~~~AI~dG 434 (667)
T TIGR00348 381 ELA--KNLKKAL-KNASFFGFTGTPIFKKDRD--------------TSLTFAYVFGRY--LHRY-------FITDAIRDG 434 (667)
T ss_pred HHH--HHHHhhC-CCCcEEEEeCCCccccccc--------------ccccccCCCCCe--EEEe-------eHHHHhhcC
Confidence 322 2222221 4568999999997532111 111111100000 0000 111111110
Q ss_pred hhhhehhhhhhhcCCcccEEEEEe--cCCHHHHHH-HHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCcc
Q 005980 393 VMIRRLKKDVLAQLPVKRRQQVFL--DVAEKDMRQ-IYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAE 469 (666)
Q Consensus 393 ~~lrr~k~~v~~~lp~~~~~~v~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (666)
.+.+..+..+.. .++.+.... +.+.+... ...........+..... .....+ ...
T Consensus 435 ------------~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~-~~~~~~--~~~ 492 (667)
T TIGR00348 435 ------------LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL-------PERIREITKESLKEKLQ-KTKKIL--FNE 492 (667)
T ss_pred ------------CeeeEEEEecchhhccChHHHHHHHHHHHHhh-------hccccHHHHHHHHHHHH-HHHhhh--cCh
Confidence 111111111111 122211111 11111100 00000000000000000 000011 122
Q ss_pred ccHHHHHHHHHHHH----H-cCCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHH----------------
Q 005980 470 AKIPAVLDYLETVI----E-AGCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPA---------------- 523 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~----~-~g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~---------------- 523 (666)
..+..+.+.+.+.. . .+.|.+|||.++.++..+.+.|.+. +...+.++|+.+..
T Consensus 493 ~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~ 572 (667)
T TIGR00348 493 DRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDK 572 (667)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhcccccc
Confidence 33444444443332 2 3589999999999999888887664 34567777765433
Q ss_pred -----HHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhcc-CCCC-cEEEEEEEe
Q 005980 524 -----SRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRI-GQVS-SVNVYYLLA 595 (666)
Q Consensus 524 -----~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~-Gq~~-~V~v~~lv~ 595 (666)
....++++|.++..+ -+|++.+...+|+|.|.++++++.-|--+. .+.|++||+.|+ +..| ...|+.++-
T Consensus 573 ~~~~~~~~~~~~~Fk~~~~~-~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 573 SDGFEIYYKDLERFKKEENP-KLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred chhhhHHHHHHHHhcCCCCc-eEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 224789999876544 456666999999999999999999988765 478999999995 5444 467777765
No 64
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.8e-20 Score=191.01 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=212.4
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCC------------C-CcEEEEeCC-cchHHHHHHH
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRD------------V-WPVLILTPS-SLRLHWAAMI 235 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~------------~-~~~LIv~P~-sl~~qW~~e~ 235 (666)
...+.|+|+.++.-+.. |++.+.+.+||+|||..-+.-+ .++.+ . -..||++|+ .|+.|-..|.
T Consensus 94 ~~~ptpvQk~sip~i~~-Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISG-GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred ccCCCcceeeccceeec-CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 35788999999976665 7788899999999998765322 22211 1 238999999 8999999999
Q ss_pred HHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCC-h
Q 005980 236 QQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKN-A 312 (666)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn-~ 312 (666)
.++.........+++.. .+- +. .........++.++|...+....+. +...+..++|+|||.++-. .
T Consensus 173 ~k~~~~s~~~~~~~ygg---~~~-~~------q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m 242 (482)
T KOG0335|consen 173 RKFSYLSGMKSVVVYGG---TDL-GA------QLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM 242 (482)
T ss_pred HhhcccccceeeeeeCC---cch-hh------hhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc
Confidence 99987666555555432 111 00 1122334566889999888765542 2223456999999999865 1
Q ss_pred --hHHHHHHhhhhh---hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHH
Q 005980 313 --QAKRTAATLPII---KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387 (666)
Q Consensus 313 --~s~~~~~~~~l~---~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 387 (666)
....-+.+...- ...++.++.|||-- .+++.
T Consensus 243 gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp--------------------------------------------~~iq~ 278 (482)
T KOG0335|consen 243 GFEPQIRKIVEQLGMPPKNNRQTLLFSATFP--------------------------------------------KEIQR 278 (482)
T ss_pred cccccHHHHhcccCCCCccceeEEEEeccCC--------------------------------------------hhhhh
Confidence 112222221110 13456688888841 11111
Q ss_pred Hhhh---hhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhh
Q 005980 388 LMKA---TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIY 464 (666)
Q Consensus 388 ll~~---~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (666)
+... ..+++-.-..+...-.......++|.
T Consensus 279 l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------------------- 311 (482)
T KOG0335|consen 279 LAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------------------- 311 (482)
T ss_pred hHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------------------
Confidence 1100 00000000111111112222233332
Q ss_pred cCCccccHHHHHHHHHHHHH---c----CCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 465 TDSAEAKIPAVLDYLETVIE---A----GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~---~----g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
...|...|++++..... + .++++||++.+..++.+..+|...++++..|+|..+..+|.+.++.|+++.
T Consensus 312 ---~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~- 387 (482)
T KOG0335|consen 312 ---EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK- 387 (482)
T ss_pred ---chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC-
Confidence 22355556666654321 1 249999999999999999999999999999999999999999999999998
Q ss_pred ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEE
Q 005980 538 VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593 (666)
Q Consensus 538 ~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l 593 (666)
.-+|++|.+++.|||++...+||+||.|-+-..|+.|+||.+|.|+.-..+.+.-
T Consensus 388 -~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 388 -APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred -cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 6689999999999999999999999999999999999999999999866555443
No 65
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.84 E-value=2.3e-20 Score=190.10 Aligned_cols=310 Identities=20% Similarity=0.290 Sum_probs=212.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--------CCCCcEEEEeCC-cchHHHHHHHHHHhcCC-
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--------RDVWPVLILTPS-SLRLHWAAMIQQWLNIP- 242 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--------~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~- 242 (666)
.+.+-|...+.-++. |..++.+.-||+|||+..+--+-.+ +..-.+|||||+ .|-.|-..|.++.+...
T Consensus 104 ~MT~VQ~~ti~pll~-gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE-GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred chhHHHHhhcCccCC-CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 577889888888887 5688999999999998765433322 122348999999 78888888887776433
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc---CCccEEEEcCccccCChhHH-HHH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMS---SNFKIVIADESHFLKNAQAK-RTA 318 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~---~~~~~vIiDEaH~~kn~~s~-~~~ 318 (666)
...+.+++ +|.++... .........+.|.|+..|..+...-.. ..-+++|+|||.++...+.. -..
T Consensus 183 ~~~v~~vi---GG~~~~~e-------~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~ 252 (543)
T KOG0342|consen 183 SITVGIVI---GGNNFSVE-------ADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVE 252 (543)
T ss_pred CcceEEEe---CCccchHH-------HHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHH
Confidence 33333332 23332110 011112456889999999877653211 13368999999999875543 334
Q ss_pred HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
.+..++.+.++.++.|||-- . +...+.. +.+.|
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~-~-------------------------------------------kV~~l~~--~~L~~- 285 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQP-S-------------------------------------------KVKDLAR--GALKR- 285 (543)
T ss_pred HHHHhccccceeeEeeCCCc-H-------------------------------------------HHHHHHH--HhhcC-
Confidence 45555557888899999951 1 1122211 11111
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHh-hhcCCccccHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINK-IYTDSAEAKIPAVLD 477 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Kl~~l~~ 477 (666)
..+++...+..... ....+.+ +.-.....++-.+..
T Consensus 286 -------------d~~~v~~~d~~~~~------------------------------The~l~Qgyvv~~~~~~f~ll~~ 322 (543)
T KOG0342|consen 286 -------------DPVFVNVDDGGERE------------------------------THERLEQGYVVAPSDSRFSLLYT 322 (543)
T ss_pred -------------CceEeecCCCCCcc------------------------------hhhcccceEEeccccchHHHHHH
Confidence 11122221110000 0000111 112234456677888
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
+|.+... ..|+|||+....+..+..+.|....+++..|||..++..|..+..+|.+.+ .-+|+||++++.|+|+++.
T Consensus 323 ~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 323 FLKKNIK-RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHhcC-CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc--cceEEecchhhccCCCCCc
Confidence 8888542 399999999999999999999999999999999999999999999999988 6689999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhccCCCC
Q 005980 558 STVIFAELSWTPGDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 586 (666)
+.||.|+||-+|..|++|+||..|-|.+-
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCc
Confidence 99999999999999999999999977553
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.4e-19 Score=194.39 Aligned_cols=307 Identities=14% Similarity=0.126 Sum_probs=204.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
..||=|.++++.++. +..+|.-.+||.||++..-.-+... .+.+|||.|- +|+....+.+.... +.. ...
T Consensus 17 ~FR~gQ~evI~~~l~-g~d~lvvmPTGgGKSlCyQiPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G-i~A-----~~l 87 (590)
T COG0514 17 SFRPGQQEIIDALLS-GKDTLVVMPTGGGKSLCYQIPALLL--EGLTLVVSPLISLMKDQVDQLEAAG-IRA-----AYL 87 (590)
T ss_pred ccCCCHHHHHHHHHc-CCcEEEEccCCCCcchHhhhHHHhc--CCCEEEECchHHHHHHHHHHHHHcC-cee-----ehh
Confidence 467889999999998 5789999999999998765444433 6899999998 88888888877652 221 111
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH--HHHHHHhcCCccEEEEcCccccCChh------HHHHHHhhhh
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL--KLQNILMSSNFKIVIADESHFLKNAQ------AKRTAATLPI 323 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~--~~~~~l~~~~~~~vIiDEaH~~kn~~------s~~~~~~~~l 323 (666)
...-...+...+...... ....++..+++.+. ...+.+...+..+++|||||.+..++ ..+...+...
T Consensus 88 nS~l~~~e~~~v~~~l~~----g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 88 NSTLSREERQQVLNQLKS----GQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred hcccCHHHHHHHHHHHhc----CceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 111111111111111000 12236677888876 34556667899999999999997653 2333333332
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
+ ....+++||||--..--.|+..+|..-.+..
T Consensus 164 ~-~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~----------------------------------------------- 195 (590)
T COG0514 164 L-PNPPVLALTATATPRVRDDIREQLGLQDANI----------------------------------------------- 195 (590)
T ss_pred C-CCCCEEEEeCCCChHHHHHHHHHhcCCCcce-----------------------------------------------
Confidence 2 2467899988864333334433333222211
Q ss_pred hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHH
Q 005980 404 AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVI 483 (666)
Q Consensus 404 ~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~ 483 (666)
+...++-.. .++..... .....++..+.+ ...
T Consensus 196 ----------~~~sfdRpN--i~~~v~~~---------------------------------~~~~~q~~fi~~---~~~ 227 (590)
T COG0514 196 ----------FRGSFDRPN--LALKVVEK---------------------------------GEPSDQLAFLAT---VLP 227 (590)
T ss_pred ----------EEecCCCch--hhhhhhhc---------------------------------ccHHHHHHHHHh---hcc
Confidence 111111110 00000000 000112222222 111
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEe
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFA 563 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~ 563 (666)
..+..-||||..+...+.+..+|...|++...+||+++.++|...-++|.+++ ..++++|.|.|.|||=++...||+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~--~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE--IKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccccCccCCCCceEEEEe
Confidence 34556899999999999999999999999999999999999999999999988 6789999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 564 ELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 564 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
++|-+...|.|=+|||+|-|....+..
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 999999999999999999998766543
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.6e-19 Score=200.33 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=111.0
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+......+.++||||......+.+...|.+.|+++..++|.+...++..+...++.+ .++++|+.
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIATdm 485 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVATNM 485 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC----eEEEEccc
Confidence 35799999999988767899999999999999999999999999999999999888887777777654 37899999
Q ss_pred cccccCc---ccCC-----EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 548 GGVGLTL---TAAS-----TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 548 ~~~GlnL---~~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
+|.|+|+ +..+ +||.+++|-|+..+.|+.||++|.|..-.... ++ |.|+.++...
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~~ 548 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKRF 548 (790)
T ss_pred hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHhh
Confidence 9999999 5777 99999999999999999999999997754422 23 3466666544
No 68
>COG4889 Predicted helicase [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=194.38 Aligned_cols=389 Identities=16% Similarity=0.192 Sum_probs=194.5
Q ss_pred CCChhhhhcCchHHHHHHHHHHHc---CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 165 QIPAHIESKLLPFQRDGVRFALQH---GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 165 ~~p~~~~~~L~p~Q~~~v~~~~~~---~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.+|..-..+|||||..|+..+.++ +.|+=|-..+|.|||+++|-++..+.. .++|.+||+ +|+.|--+|...-..
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-~~iL~LvPSIsLLsQTlrew~~~~~ 231 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-ARILFLVPSISLLSQTLREWTAQKE 231 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-hheEeecchHHHHHHHHHHHhhccC
Confidence 455555678999999999988753 222333344999999999988887653 889999999 999886665554433
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecC--------------CCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEc
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSN--------------TKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIAD 304 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiD 304 (666)
++.....|+....-+...+.+...... .......+-.|+.+||+++...... ..-..||+||||
T Consensus 232 l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicD 311 (1518)
T COG4889 232 LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICD 311 (1518)
T ss_pred ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEec
Confidence 333333344333222222222211100 0111123345888999999765543 334589999999
Q ss_pred CccccCCh------hHHHHH--HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccc
Q 005980 305 ESHFLKNA------QAKRTA--ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIY 376 (666)
Q Consensus 305 EaH~~kn~------~s~~~~--~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~ 376 (666)
|||+..+. .+..++ .-..+ ++.+|+.+||||- +|+....=...-......+..
T Consensus 312 EAHRTtGa~~a~dd~saFt~vHs~~ni--Ka~kRlYmTATPk-----------------iy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 312 EAHRTTGATLAGDDKSAFTRVHSDQNI--KAAKRLYMTATPK-----------------IYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred chhccccceecccCcccceeecCcchh--HHHHhhhcccCch-----------------hhchhhhhhhhhccceeeccc
Confidence 99998542 122221 11222 6788899999992 111100000000000000000
Q ss_pred cCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHH-HHHH---------HHHHHHHhHHHhcCCH
Q 005980 377 QGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQI-YALF---------RELEVVKGKIKACKSE 446 (666)
Q Consensus 377 ~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~ 446 (666)
....--++++++=-+. -...++ |.. +.++.+.++++-...- .... .....+.+....
T Consensus 373 De~~fGeef~rl~Fge----Av~rdl---LTD--YKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnG---- 439 (1518)
T COG4889 373 DELTFGEEFHRLGFGE----AVERDL---LTD--YKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNG---- 439 (1518)
T ss_pred hhhhhchhhhcccHHH----HHHhhh---hcc--ceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhh----
Confidence 0000001111111000 001111 222 2233333333221100 0000 000000000000
Q ss_pred HHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC----CceEEEEECCCCH
Q 005980 447 EEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK----KVHCIRIDGGTPP 522 (666)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~----g~~~~~i~G~~~~ 522 (666)
+..-........+..+ ..+-++..+.+.+.+.. .++ |--+|...++.....|.+. .+.+-.++|+|+.
T Consensus 440 --lakr~g~~n~~~~~~~---d~ap~~RAIaF~k~I~t-SK~--i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNa 511 (1518)
T COG4889 440 --LAKRNGEDNDLKNIKA---DTAPMQRAIAFAKDIKT-SKQ--IAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNA 511 (1518)
T ss_pred --hhhhccccccccCCcC---CchHHHHHHHHHHhhHH-HHH--HHHHHHHHHHHHHHHHHhcCCCceEEeecccccccH
Confidence 0000000000000001 11122222222222110 000 1112233333333334333 4567779999999
Q ss_pred HHHHHHHHHhcC-CCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCc-EEEEEEE
Q 005980 523 ASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS-VNVYYLL 594 (666)
Q Consensus 523 ~~R~~~i~~F~~-~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~-V~v~~lv 594 (666)
.+|.+....-+. .++...+|...++++||+|+|+.+.|||++|--+....+|+.||+.|....|+ -+|+--+
T Consensus 512 l~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 512 LERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred HHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999766554322 23336688999999999999999999999999999999999999999876654 3444444
No 69
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.3e-19 Score=183.22 Aligned_cols=312 Identities=17% Similarity=0.248 Sum_probs=209.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-c-CC-----CC--cEEEEeCC-cchHHHHHHHHHHhc-C
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-F-RD-----VW--PVLILTPS-SLRLHWAAMIQQWLN-I 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~-~~-----~~--~~LIv~P~-sl~~qW~~e~~~~~~-~ 241 (666)
...|-|..++-.++. +..+.+-..||+|||+.-+.-+.. + ++ .+ -.|||+|+ .|..|-.+-+..|+. +
T Consensus 28 ~mTpVQa~tIPlll~-~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l 106 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK-NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHL 106 (567)
T ss_pred ccCHHHHhhhHHHhc-CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhh
Confidence 578899999998887 567888889999999986654332 2 11 11 37999999 677776665555542 2
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH----HhcCCccEEEEcCccccCChhHHH-
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI----LMSSNFKIVIADESHFLKNAQAKR- 316 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~~s~~- 316 (666)
+..+...++++ ..-..++..+. .....+.|.|+..+...... +.-....++|+|||.++...+...
T Consensus 107 ~~l~~~l~vGG--~~v~~Di~~fk-------ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~ 177 (567)
T KOG0345|consen 107 PNLNCELLVGG--RSVEEDIKTFK-------EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEAS 177 (567)
T ss_pred hccceEEEecC--ccHHHHHHHHH-------HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHH
Confidence 33333333322 22222221111 12345889999988766554 433357799999999998876543
Q ss_pred HHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhh
Q 005980 317 TAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIR 396 (666)
Q Consensus 317 ~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lr 396 (666)
...+...+++-++.=+.|||-.+ +...+.. .-+|
T Consensus 178 ~n~ILs~LPKQRRTGLFSATq~~--------------------------------------------~v~dL~r--aGLR 211 (567)
T KOG0345|consen 178 VNTILSFLPKQRRTGLFSATQTQ--------------------------------------------EVEDLAR--AGLR 211 (567)
T ss_pred HHHHHHhcccccccccccchhhH--------------------------------------------HHHHHHH--hhcc
Confidence 34455556566666777998621 1111111 1111
Q ss_pred ehhhhhhhcCCcccEEEEEecC---CHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHH
Q 005980 397 RLKKDVLAQLPVKRRQQVFLDV---AEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP 473 (666)
Q Consensus 397 r~k~~v~~~lp~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~ 473 (666)
...+..|-..- ++... ...+....+..|..
T Consensus 212 -----------Npv~V~V~~k~~~~tPS~L------------------------------------~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 212 -----------NPVRVSVKEKSKSATPSSL------------------------------------ALEYLVCEADEKLS 244 (567)
T ss_pred -----------CceeeeecccccccCchhh------------------------------------cceeeEecHHHHHH
Confidence 11111111000 11110 01111123345888
Q ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccc
Q 005980 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 474 ~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~G 551 (666)
.++++|.+ ...+|+|||-..-...++....|... ++.++.+||.++...|..+++.|.... .-+|+||++++.|
T Consensus 245 ~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~--~~vl~~TDVaARG 320 (567)
T KOG0345|consen 245 QLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS--NGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc--CceEEeehhhhcc
Confidence 89999988 57899999988888888888777664 678999999999999999999999855 5679999999999
Q ss_pred cCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEE
Q 005980 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 552 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
||+++.+.||.+|||-+|..+.+|.||..|.|......|+
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 9999999999999999999999999999999987665443
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.83 E-value=5.5e-19 Score=196.82 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=90.2
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHh-cCCCCceEEEEeccccccccCcccCCEEE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEF-QEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F-~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
.+.++|||+.....++.+.+.|.+. ++.+..+||+++. +++.+++| +++. +.+|++|+.+++|||++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk--~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKN--PSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCc--eeEEeccChhhccccccCeeEEE
Confidence 4678999999999999999999887 7899999999985 45677887 4555 67899999999999999999999
Q ss_pred Eec---CC---------CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 562 FAE---LS---------WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 562 ~~d---~~---------wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
.++ .+ .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 997 22 2667889999999997 34567888887764
No 71
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2e-19 Score=184.26 Aligned_cols=356 Identities=19% Similarity=0.255 Sum_probs=211.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-Hhc--------CCCCc-EEEEeCC-cchHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCF--------RDVWP-VLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~--------~~~~~-~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
.+.--|+.++--++. |+.+++-..||+|||+.-+.-+ ..+ +..++ .||+||+ .|+.|-.+-+.+...
T Consensus 159 ~pTsVQkq~IP~lL~-grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~- 236 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE-GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK- 236 (708)
T ss_pred ccchHhhcchhhhhc-CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc-
Confidence 355679999988888 7789999999999999865433 222 22444 7999999 799998888888764
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChh-----
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQ----- 313 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~----- 313 (666)
+...|+..+ -.+|.++.. .+.....+..|.|.|+..+..+... +.-.+...||+|||.++..-+
T Consensus 237 ~~hWIVPg~-lmGGEkkKS-------EKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdi 308 (708)
T KOG0348|consen 237 PFHWIVPGV-LMGGEKKKS-------EKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDI 308 (708)
T ss_pred CceEEeece-eeccccccc-------HHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhH
Confidence 222332222 223333321 1222233455889999999877653 333356789999999996532
Q ss_pred HHHHHHhhhh----h-----hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHH
Q 005980 314 AKRTAATLPI----I-----KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384 (666)
Q Consensus 314 s~~~~~~~~l----~-----~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 384 (666)
++..+++-.. . ..-...++||||-- .... .
T Consensus 309 t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt-d~V~----------------------------------------r 347 (708)
T KOG0348|consen 309 TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT-DGVN----------------------------------------R 347 (708)
T ss_pred HHHHHHHhhccchhcccccccHHHHhHhhhhhhH-HHHH----------------------------------------H
Confidence 2222333110 0 01134588888851 1111 1
Q ss_pred HHHH-hhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhh
Q 005980 385 LHNL-MKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKI 463 (666)
Q Consensus 385 l~~l-l~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (666)
|..+ ++.++++. +-+.-....|...-....++. + ..+.+.+. ....++...+
T Consensus 348 La~~sLkDpv~I~-ld~s~~~~~p~~~a~~ev~~~-~------------------------~~~~l~~~-~iPeqL~qry 400 (708)
T KOG0348|consen 348 LADLSLKDPVYIS-LDKSHSQLNPKDKAVQEVDDG-P------------------------AGDKLDSF-AIPEQLLQRY 400 (708)
T ss_pred HhhccccCceeee-ccchhhhcCcchhhhhhcCCc-c------------------------cccccccc-cCcHHhhhce
Confidence 1111 11122222 000000000000000000000 0 00000000 0011222222
Q ss_pred hcCCccccHHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHHHHh----------------------CCceEEEEECC
Q 005980 464 YTDSAEAKIPAVLDYLETVIE--AGCKFLIFAHHQPMLDAIHQLFLK----------------------KKVHCIRIDGG 519 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~--~g~KvlVF~~~~~~~~~l~~~L~~----------------------~g~~~~~i~G~ 519 (666)
......-++-+|..+|.+... ...|+|||....+..+.=+..|.. .+.++.++||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 233344456667777766543 456889998888777665554422 13479999999
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 520 TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 520 ~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
+++.+|..++..|.... ..+|+||++++.||||+....||.||+|.++..|..|+||..|+|-+..... ++.+.-.
T Consensus 481 m~QeeRts~f~~Fs~~~--~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Ea 556 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSR--RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEA 556 (708)
T ss_pred hhHHHHHHHHHhhcccc--ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHH
Confidence 99999999999999888 5589999999999999999999999999999999999999999998766433 3444434
Q ss_pred HHHHHHHHHHHHH
Q 005980 600 DDIVWDVVRSKLE 612 (666)
Q Consensus 600 ee~i~~~~~~K~~ 612 (666)
| ....+..+..
T Consensus 557 e--y~~~l~~~~~ 567 (708)
T KOG0348|consen 557 E--YVNYLKKHHI 567 (708)
T ss_pred H--HHHHHHhhcc
Confidence 3 4444444433
No 72
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=1.9e-19 Score=194.95 Aligned_cols=339 Identities=16% Similarity=0.166 Sum_probs=209.0
Q ss_pred hhhcCchHHHHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 170 IESKLLPFQRDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
....+|+||..|++...+ .+.++||...||+|||.+|++++..+.+ .+++|+++-. +|+.|=..++.+|.+.
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 456799999999998763 3557999999999999999999998743 5689999987 8999999999999853
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH-------hcCCccEEEEcCccccCChhH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL-------MSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l-------~~~~~~~vIiDEaH~~kn~~s 314 (666)
.. ...... ......+..+.++||+++......- ....||+||+||||+-- .
T Consensus 242 ~~--~~n~i~-----------------~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---~ 299 (875)
T COG4096 242 GT--KMNKIE-----------------DKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---Y 299 (875)
T ss_pred cc--ceeeee-----------------cccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---H
Confidence 32 111111 1112224568899999998665432 22359999999999742 2
Q ss_pred HHHHHhhhhhhhcceEEEeeccCCCC-----------ChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHH
Q 005980 315 KRTAATLPIIKKAQYALLLSGTPALS-----------RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHE 383 (666)
Q Consensus 315 ~~~~~~~~l~~~~~~~llLTgTP~~n-----------~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 383 (666)
+.++.+... -...+++|||||-.. .|-..|++=..+.-+.+-.+
T Consensus 300 ~~~~~I~dY--FdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy----------------------- 354 (875)
T COG4096 300 SEWSSILDY--FDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPY----------------------- 354 (875)
T ss_pred hhhHHHHHH--HHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCC-----------------------
Confidence 233344433 245567779999541 11122222222211111110
Q ss_pred HHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhh
Q 005980 384 ELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKI 463 (666)
Q Consensus 384 ~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (666)
.++--.++-+..+--|.. .+ ++.+...+.+.. ....+.....-.
T Consensus 355 --------~vi~i~~~~~~~G~~~~~--------~s-erek~~g~~i~~-----------------dd~~~~~~d~dr-- 398 (875)
T COG4096 355 --------KVIRIDTDFDLDGWKPDA--------GS-EREKLQGEAIDE-----------------DDQNFEARDFDR-- 398 (875)
T ss_pred --------CceEEeeeccccCcCcCc--------cc-hhhhhhccccCc-----------------ccccccccccch--
Confidence 011111111111111111 00 000000000000 000000000000
Q ss_pred hcCCccccHHHHHHHHHHHHHc------CCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHHHHHHHHHHh
Q 005980 464 YTDSAEAKIPAVLDYLETVIEA------GCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPASRQALVTEF 532 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~------g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F 532 (666)
........+.+...+.+.+.. -.|.||||...+++++|...|.+. |--+..|+|... +-+..++.|
T Consensus 399 -~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f 475 (875)
T COG4096 399 -TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNF 475 (875)
T ss_pred -hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHH
Confidence 000112334455555555444 259999999999999999999774 344678898876 566789999
Q ss_pred cCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccC-------CCCc-EEEEEEE
Q 005980 533 QEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIG-------QVSS-VNVYYLL 594 (666)
Q Consensus 533 ~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G-------q~~~-V~v~~lv 594 (666)
...+....+.+|.+.+.+|+|.+.|-.+||+-.--+...+.|.+||.-|.- |.|. ..|+.++
T Consensus 476 ~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 476 IDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 886666778999999999999999999999999999999999999999963 3343 5666665
No 73
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.6e-19 Score=183.75 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=226.0
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHH--HHhc------CCCCcE-EEEeCC-cchHHHHHHHHHHhcCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAV--ATCF------RDVWPV-LILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~--~~~~------~~~~~~-LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
+.+|-|..++--.+. |..+|=..-+|+|||-..+-- +..+ ...+|+ ||+||+ ++..|-..|.++|..
T Consensus 245 kptpiq~qalptals-grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K-- 321 (731)
T KOG0339|consen 245 KPTPIQCQALPTALS-GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK-- 321 (731)
T ss_pred cCCcccccccccccc-cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh--
Confidence 566667777766655 445554455999999754422 2211 236675 777899 899999999999973
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhH-HHHHH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQA-KRTAA 319 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s-~~~~~ 319 (666)
..++.++..+.+++.++...-+ .....++|+|+..+..... ...-.+..++|+||+.++...+. ...+.
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~L--------k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKEL--------KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred hccceEEEeecCCcHHHHHHhh--------hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHH
Confidence 4566666666677766544322 1355688999999876653 23334678999999999977543 34555
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHH-HHHhhhhhhhheh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL-HNLMKATVMIRRL 398 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~~~lrr~ 398 (666)
+...+...+..|++|||-- ...+.| +.+|..+ +|++
T Consensus 394 I~~hirpdrQtllFsaTf~-----------------------------------------~kIe~lard~L~dp--VrvV 430 (731)
T KOG0339|consen 394 IKQHIRPDRQTLLFSATFK-----------------------------------------KKIEKLARDILSDP--VRVV 430 (731)
T ss_pred HHhhcCCcceEEEeeccch-----------------------------------------HHHHHHHHHHhcCC--eeEE
Confidence 5555556788899999951 001111 1111111 1222
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
..+|. .-..-..+.|++-. +...|+++|+..
T Consensus 431 qg~vg-ean~dITQ~V~V~~------------------------------------------------s~~~Kl~wl~~~ 461 (731)
T KOG0339|consen 431 QGEVG-EANEDITQTVSVCP------------------------------------------------SEEKKLNWLLRH 461 (731)
T ss_pred Eeehh-ccccchhheeeecc------------------------------------------------CcHHHHHHHHHH
Confidence 22221 11111112222221 234588899988
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
|.... ...++|||..-....+.|...|+-+|+++..++|++.+.+|.+.+..|+.+. .-+|+.|+++..|++++...
T Consensus 462 L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~--~~VlvatDvaargldI~~ik 538 (731)
T KOG0339|consen 462 LVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR--KPVLVATDVAARGLDIPSIK 538 (731)
T ss_pred hhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC--CceEEEeeHhhcCCCccccc
Confidence 88764 4569999999999999999999999999999999999999999999999987 56788999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
+||+||..-+...+.||+||.+|-|-+ -..|.|+++...+
T Consensus 539 TVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 539 TVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred eeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999976 4678899886554
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.83 E-value=1.2e-18 Score=183.43 Aligned_cols=318 Identities=16% Similarity=0.162 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHcCC-CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhc-CC-CCcEEEEEec
Q 005980 177 FQRDGVRFALQHGG-RILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLN-IP-PSEIVVVLSQ 252 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~-~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~-~~-~~~i~~~~~~ 252 (666)
||.++++.+...+. .++++.+||+|||..++..+.. ...++++++|. +|..+|.+.+.+++. +. ...+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~-- 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH-- 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE--
Confidence 79999999987553 4688899999999988765553 45678999999 789999999998873 11 11121211
Q ss_pred CCCCCccc---ee--EEecCCCC---------CCCCCCcEEEEeHHHHHHHHHHH----------hcCCccEEEEcCccc
Q 005980 253 LGGSNRSG---FT--IVSSNTKR---------NIPLDGLFNIISYDVVLKLQNIL----------MSSNFKIVIADESHF 308 (666)
Q Consensus 253 ~~~~~~~~---~~--~~~~~~~~---------~~~~~~~v~I~sy~~l~~~~~~l----------~~~~~~~vIiDEaH~ 308 (666)
..+..... +. ........ .......+++|+++.+....... ....+++||+||+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 12211110 00 00000000 00124557889999887443211 113679999999999
Q ss_pred cCChhHH------HHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCccccc-ccCCCC
Q 005980 309 LKNAQAK------RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGI-YQGASN 381 (666)
Q Consensus 309 ~kn~~s~------~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~-~~~~~~ 381 (666)
+...... ....+........+.++|||||- .++...+.-+. .++. .... ..|. +....+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~----~~~~~~l~~~~--~~~~------~~~~--v~g~~~~~~~~ 222 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPD----PALILRLQNAK--QAGV------KIAP--IDGEKYQFPDN 222 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCC----HHHHHHHHhcc--ccCc------eeee--ecCcccccCCC
Confidence 9753211 11111111112468899999983 23332222110 0000 0000 0000 000000
Q ss_pred HHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHH
Q 005980 382 HEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLIN 461 (666)
Q Consensus 382 ~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (666)
.++..-.. .. .....+|+ ..+.+.. .+.....
T Consensus 223 -~~~~~~~~-~~-------~~~~~~~~-i~~~~~~--~~~~~~~------------------------------------ 254 (357)
T TIGR03158 223 -PELEADNK-TQ-------SFRPVLPP-VELELIP--APDFKEE------------------------------------ 254 (357)
T ss_pred -hhhhcccc-cc-------ccceeccc-eEEEEEe--CCchhHH------------------------------------
Confidence 00000000 00 00001121 1111111 1110000
Q ss_pred hhhcCCccccHHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHhCC--ceEEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 462 KIYTDSAEAKIPAVLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLKKK--VHCIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 462 ~~~~~~~~~Kl~~l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~g--~~~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
-+..+.+.+.+.. ..+.|+|||++....++.+...|+..| +.+..++|.++..+|.+.. .
T Consensus 255 ---------~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~- 318 (357)
T TIGR03158 255 ---------ELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------Q- 318 (357)
T ss_pred ---------HHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------c-
Confidence 0111222222222 257899999999999999999999864 5788999999998887543 2
Q ss_pred ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhh
Q 005980 538 VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAH 580 (666)
Q Consensus 538 ~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 580 (666)
..+|++|++++.|||++.. .|| ++ +-++..|.||+||++
T Consensus 319 -~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 319 -FDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 4578999999999999864 666 56 568899999999974
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.82 E-value=4.3e-18 Score=189.67 Aligned_cols=326 Identities=19% Similarity=0.147 Sum_probs=212.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-Hhc-CC-------CCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCF-RD-------VWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~-~~-------~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
..|+|+|+.++..+.+ |.++|+..+||+|||..|+.-+ ..+ .. .-.+|-|.|- .|-..-...+..|...
T Consensus 21 ~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 21 TSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred CCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 4689999999998885 8899999999999999987432 222 22 1238999998 5555566666666532
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH------HHHhcCCccEEEEcCccccCCh--h
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ------NILMSSNFKIVIADESHFLKNA--Q 313 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~------~~l~~~~~~~vIiDEaH~~kn~--~ 313 (666)
-...+.+..++.....+ ........+|.|||++++.-.. ..| .+...||+||.|.+.+. +
T Consensus 100 ~G~~v~vRhGDT~~~er----------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l--~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 100 LGIEVAVRHGDTPQSEK----------QKMLKNPPHILITTPESLAILLNSPKFRELL--RDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred cCCccceecCCCChHHh----------hhccCCCCcEEEeChhHHHHHhcCHHHHHHh--cCCcEEEeehhhhhhccccc
Confidence 22222222221111111 1223345679999999997443 222 25779999999999753 3
Q ss_pred HHHHHHhhhhhhh--cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhh
Q 005980 314 AKRTAATLPIIKK--AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKA 391 (666)
Q Consensus 314 s~~~~~~~~l~~~--~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 391 (666)
++.+-.+.++..- -..|++||||- .+++++.. ||.+.- .
T Consensus 168 ~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~var---fL~g~~------------------------~---------- 208 (814)
T COG1201 168 VQLALSLERLRELAGDFQRIGLSATV--GPPEEVAK---FLVGFG------------------------D---------- 208 (814)
T ss_pred hhhhhhHHHHHhhCcccEEEeehhcc--CCHHHHHH---HhcCCC------------------------C----------
Confidence 4444444444333 47889999996 24444332 221110 0
Q ss_pred hhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCcccc
Q 005980 392 TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAK 471 (666)
Q Consensus 392 ~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 471 (666)
.+ .-|......+....+.++...... . ..-
T Consensus 209 ~~------~Iv~~~~~k~~~i~v~~p~~~~~~--~------------------------------------------~~~ 238 (814)
T COG1201 209 PC------EIVDVSAAKKLEIKVISPVEDLIY--D------------------------------------------EEL 238 (814)
T ss_pred ce------EEEEcccCCcceEEEEecCCcccc--c------------------------------------------cch
Confidence 00 000011112222222222211100 0 011
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCC-ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccccc
Q 005980 472 IPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK-VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550 (666)
Q Consensus 472 l~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~ 550 (666)
...+.+.+.++.++...+|||++.+.+.+.+...|++.+ ..+..=||+.+.+.|..+-++|++|+ ..+++||.++..
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~--lravV~TSSLEL 316 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE--LKAVVATSSLEL 316 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC--ceEEEEccchhh
Confidence 123445555555667799999999999999999999986 78888899999999999999999999 667889999999
Q ss_pred ccCcccCCEEEEecCCCCcchhhhhhhhhhc-cCCCCcEEEEEEEeCCCHHHHHHH
Q 005980 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHR-IGQVSSVNVYYLLANDTVDDIVWD 605 (666)
Q Consensus 551 GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R-~Gq~~~V~v~~lv~~~tiee~i~~ 605 (666)
|||+...+.||.+..|-.-+...||+||+++ +|..+. .++++.+ .|+.+--
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~ 368 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLEC 368 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHH
Confidence 9999999999999999999999999999965 444333 4555665 5554433
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=3.1e-18 Score=188.73 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=107.3
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+.+....|..+||||.+....+.+...|.+.|+++..++|. ..+|+..+..|..++ ..++++|+.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~--g~VtIATnm 462 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRK--GAVTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCC--ceEEEEecc
Confidence 3468999999998888899999999999999999999999999999999998 669999999998877 567899999
Q ss_pred cccccCccc-------CCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 548 GGVGLTLTA-------ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 548 ~~~GlnL~~-------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+|.|+|+.. ..+||.+++|-|+..+.|+.||++|.|..-...
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 999999987 669999999999999999999999999875543
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=9.4e-19 Score=206.34 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=189.1
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
...|+|+|+.++..++. |..+++..+||+|||..++.++..+ ....++|||+|+ .|+.|+.+.+.++.......+.+
T Consensus 78 G~~pt~iQ~~~i~~il~-g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~ 156 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL-GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKI 156 (1176)
T ss_pred CCCCcHHHHHHHHHHHC-CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEE
Confidence 34689999999998886 6788888899999997555444333 235679999999 89999999999987533223332
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh-----------H--H
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ-----------A--K 315 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~-----------s--~ 315 (666)
...+.+........... .-...+.+|+|+|++.+.++...+...++++||+||||++-..+ . .
T Consensus 157 ~~g~~~~~~~ek~~~~~----~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~ 232 (1176)
T PRK09401 157 LYYHSSLKKKEKEEFLE----RLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEE 232 (1176)
T ss_pred EEccCCcchhHHHHHHH----HHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHH
Confidence 22211100000000000 00012356899999999988776666679999999999985311 1 1
Q ss_pred HHHHhhhhhhh------------------------cceEEEeeccCCCCChHH-HHHHHHHhCCCCCCCHHHHhhhhhcC
Q 005980 316 RTAATLPIIKK------------------------AQYALLLSGTPALSRPIE-LFKQLEALYPDVYKNVHEYGNRYCKG 370 (666)
Q Consensus 316 ~~~~~~~l~~~------------------------~~~~llLTgTP~~n~~~e-l~~~l~~l~p~~~~~~~~f~~~~~~~ 370 (666)
....+..+++. ....+++|||.-...... ++
T Consensus 233 ~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~------------------------ 288 (1176)
T PRK09401 233 DIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLF------------------------ 288 (1176)
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHh------------------------
Confidence 11112211111 356688888874321110 00
Q ss_pred cccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHh
Q 005980 371 GVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQ 450 (666)
Q Consensus 371 ~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (666)
..++. +.+.+. ..........++..+
T Consensus 289 ---------------~~ll~--~~v~~~------~~~~rnI~~~yi~~~------------------------------- 314 (1176)
T PRK09401 289 ---------------RELLG--FEVGSP------VFYLRNIVDSYIVDE------------------------------- 314 (1176)
T ss_pred ---------------hccce--EEecCc------ccccCCceEEEEEcc-------------------------------
Confidence 00000 000000 000001111111111
Q ss_pred hchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHH---HHHHHHHHHhCCceEEEEECCCCHHHHHH
Q 005980 451 SLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPM---LDAIHQLFLKKKVHCIRIDGGTPPASRQA 527 (666)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~---~~~l~~~L~~~g~~~~~i~G~~~~~~R~~ 527 (666)
.|...+.+++.. .+.+.|||++.... ++.+.+.|...|+++..+||++ .+
T Consensus 315 -------------------~k~~~L~~ll~~---l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 315 -------------------DSVEKLVELVKR---LGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred -------------------cHHHHHHHHHHh---cCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 244455566544 35689999998666 9999999999999999999999 23
Q ss_pred HHHHhcCCCCceEEEEe---ccccccccCccc-CCEEEEecCCC------Ccchhhhhhhhhhcc
Q 005980 528 LVTEFQEKDDVKAAVLS---MKAGGVGLTLTA-ASTVIFAELSW------TPGDLIQAEDRAHRI 582 (666)
Q Consensus 528 ~i~~F~~~~~~~v~L~s---t~a~~~GlnL~~-a~~VI~~d~~w------np~~~~Qa~gR~~R~ 582 (666)
.+++|.+|+ +.+++.+ |++++.|||++. .++||||+.|- ....+..++||...+
T Consensus 368 ~l~~F~~G~-~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 368 KFEKFEEGE-VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHCCC-CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 459999998 3444443 789999999998 89999999997 667778888888643
No 78
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.2e-19 Score=180.25 Aligned_cols=322 Identities=16% Similarity=0.226 Sum_probs=212.0
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhc--CC----CCcEEEEeCC-cc---hHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCF--RD----VWPVLILTPS-SL---RLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~--~~----~~~~LIv~P~-sl---~~qW~~e~~~~~~~ 241 (666)
.+.|-|...+--++- |..++-|..||+|||-..+. ++..+ +. ..++||+||+ .| +.+-...+..|+.+
T Consensus 203 ~PTpIQ~a~IPvall-gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I 281 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL-GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDI 281 (691)
T ss_pred CCCchhhhcccHHhh-cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccc
Confidence 567788888876665 55667778899999975332 22222 21 4469999999 56 44566677777743
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhH-HHH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQA-KRT 317 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s-~~~ 317 (666)
. +...++ +-+-+... ......++|+|.|+..+..+... |.-....++|+|||.++...+. -..
T Consensus 282 ~---~~L~vG--GL~lk~QE--------~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFadem 348 (691)
T KOG0338|consen 282 T---VGLAVG--GLDLKAQE--------AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEM 348 (691)
T ss_pred e---eeeeec--CccHHHHH--------HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHH
Confidence 2 222222 22111111 11123456899999998876543 2223456899999999976543 356
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
..+..++++.++.+++|||.- ++...+..
T Consensus 349 nEii~lcpk~RQTmLFSATMt--------------------------------------------eeVkdL~s------- 377 (691)
T KOG0338|consen 349 NEIIRLCPKNRQTMLFSATMT--------------------------------------------EEVKDLAS------- 377 (691)
T ss_pred HHHHHhccccccceeehhhhH--------------------------------------------HHHHHHHH-------
Confidence 667777778888999999961 12222211
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
|.-+....++++....-... +.+++-.+ .....--+-..+..
T Consensus 378 --------lSL~kPvrifvd~~~~~a~~---LtQEFiRI---------------------------R~~re~dRea~l~~ 419 (691)
T KOG0338|consen 378 --------LSLNKPVRIFVDPNKDTAPK---LTQEFIRI---------------------------RPKREGDREAMLAS 419 (691)
T ss_pred --------hhcCCCeEEEeCCccccchh---hhHHHhee---------------------------ccccccccHHHHHH
Confidence 11112223344333211100 00110000 00011113334555
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
++.... ..+++||.+....+..+.-.|--.|+++.-+||+.++.+|.+.++.|++.. ..+|++|++++.|||+.+.
T Consensus 420 l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~e--idvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 420 LITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEE--IDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhcc--CCEEEEechhhccCCccce
Confidence 555543 678999999999999999999999999999999999999999999999988 7789999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 005980 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 605 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~ 605 (666)
.+||+|+.|-+...|.+|.||..|-|.... -+.|+.++ |-+|+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGr--sVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGR--SVTLVGES--DRKLLK 539 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcc--eEEEeccc--cHHHHH
Confidence 999999999999999999999999986532 23455554 444443
No 79
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.9e-19 Score=181.91 Aligned_cols=362 Identities=15% Similarity=0.172 Sum_probs=213.2
Q ss_pred hcCchHHHHHHHHHHH--------cCCCeeeecCCCCcHHHH-HHHHHHhcC----CCCcEEEEeCC-cchHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQ--------HGGRILLADEMGLGKTIQ-AIAVATCFR----DVWPVLILTPS-SLRLHWAAMIQQ 237 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~--------~~~~~iLad~~GlGKTi~-ala~~~~~~----~~~~~LIv~P~-sl~~qW~~e~~~ 237 (666)
..++|-|...+-|++. +++.++++.+||+|||+. +|-+..++. +.-+.+||+|+ .|..|-.+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 5789999999999864 256788999999999987 344444432 23468999999 789999999999
Q ss_pred HhcCCCCcEEEEEecCC-CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChh
Q 005980 238 WLNIPPSEIVVVLSQLG-GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~ 313 (666)
|..... +.|....+. .-..+...+.. .......+|+|+|+..+..+... +......++|+|||.++.+..
T Consensus 238 ~~~~tg--L~V~~~sgq~sl~~E~~qL~~----~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 238 LNSGTG--LAVCSLSGQNSLEDEARQLAS----DPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred hccCCc--eEEEecccccchHHHHHHHhc----CCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH
Confidence 985332 222221111 11111111111 11112346889999999877653 222346789999999998866
Q ss_pred HHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHH-hhhhhcCcccccccCCCCHHHHHHHhhhh
Q 005980 314 AKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEY-GNRYCKGGVFGIYQGASNHEELHNLMKAT 392 (666)
Q Consensus 314 s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 392 (666)
.+.+--......+...++.+ +.+++.+..-..|..++....- ...| ..|..++..
T Consensus 312 fQ~Wl~~v~~~~~~~k~~~~--------~~nii~~~~~~~pt~~~e~~t~~~~~~---------------~~l~kL~~s- 367 (620)
T KOG0350|consen 312 FQEWLDTVMSLCKTMKRVAC--------LDNIIRQRQAPQPTVLSELLTKLGKLY---------------PPLWKLVFS- 367 (620)
T ss_pred HHHHHHHHHHHhCCchhhcC--------hhhhhhhcccCCchhhHHHHhhcCCcC---------------chhHhhhcc-
Confidence 55443222111122222211 1122222111111111110000 0000 001111110
Q ss_pred hhhhehhh---hhhhcCCcccEEEEE------ecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhh
Q 005980 393 VMIRRLKK---DVLAQLPVKRRQQVF------LDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKI 463 (666)
Q Consensus 393 ~~lrr~k~---~v~~~lp~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (666)
-.+.+.-. ++....|. ...++ ..+.+. +.. ..
T Consensus 368 atLsqdP~Kl~~l~l~~Pr--l~~v~~~~~~ryslp~~-l~~------------------------------------~~ 408 (620)
T KOG0350|consen 368 ATLSQDPSKLKDLTLHIPR--LFHVSKPLIGRYSLPSS-LSH------------------------------------RL 408 (620)
T ss_pred hhhhcChHHHhhhhcCCCc--eEEeecccceeeecChh-hhh------------------------------------ce
Confidence 00000000 00001111 00011 111110 000 00
Q ss_pred hcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHH----hCCceEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFL----KKKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
...+..-|-..+..+|.. .+..++|+|+...+....+...|+ +...++-.++|+.+.+.|.+++++|+.|+ .
T Consensus 409 vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~--i 484 (620)
T KOG0350|consen 409 VVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGD--I 484 (620)
T ss_pred eecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCC--c
Confidence 001111244455566655 578999999999999888888776 34667778999999999999999999998 7
Q ss_pred EEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 540 AAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 540 v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
.+|+++++++.|+|+.+.+.||+||||-....|++|+||..|.||...+ |.++... |++.|..+-+|
T Consensus 485 ~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a--~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 485 NVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA--ITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred eEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE--EEeeccc--cchHHHHHHHH
Confidence 7899999999999999999999999999999999999999999987643 5565543 45555554444
No 80
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=2.2e-17 Score=188.38 Aligned_cols=303 Identities=17% Similarity=0.156 Sum_probs=187.4
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGS 256 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~ 256 (666)
+..+-..++.+..+|+..+||+|||.+..-.+.. .....+++|+.|+ .+..|-...+.+.++......+.+.. ...
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v--r~~ 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV--RGE 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE--ccc
Confidence 3444455666778999999999999987655443 2335689999999 55677777776666533222111110 110
Q ss_pred CccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCccc-cCChhH--HHHHHhhhhhhhcceEEE
Q 005980 257 NRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHF-LKNAQA--KRTAATLPIIKKAQYALL 332 (666)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~-~kn~~s--~~~~~~~~l~~~~~~~ll 332 (666)
. .......+.++|...+.+.... ..-.++++||+||+|. ..+... ...+.+...+....+.++
T Consensus 85 ~-------------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 85 N-------------KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred c-------------ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 0 1112235778888888765432 2234789999999994 444321 122223322234567899
Q ss_pred eeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEE
Q 005980 333 LSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQ 412 (666)
Q Consensus 333 LTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~ 412 (666)
+|||.-...+. .++. .. ++ +. ... ...|. .
T Consensus 152 mSATl~~~~l~------~~l~---------------~~---------------------~v-I~-~~g---r~~pV---e 181 (819)
T TIGR01970 152 MSATLDGERLS------SLLP---------------DA---------------------PV-VE-SEG---RSFPV---E 181 (819)
T ss_pred EeCCCCHHHHH------HHcC---------------CC---------------------cE-EE-ecC---cceee---e
Confidence 99997321110 1110 00 00 00 000 00111 1
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEE
Q 005980 413 QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIF 492 (666)
Q Consensus 413 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF 492 (666)
..++.....+. +.. .....+..++. +.+.++|||
T Consensus 182 ~~y~~~~~~~~--~~~-----------------------------------------~v~~~l~~~l~---~~~g~iLVF 215 (819)
T TIGR01970 182 IRYLPLRGDQR--LED-----------------------------------------AVSRAVEHALA---SETGSILVF 215 (819)
T ss_pred eEEeecchhhh--HHH-----------------------------------------HHHHHHHHHHH---hcCCcEEEE
Confidence 22222211110 000 00012222222 235789999
Q ss_pred eccHHHHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC---
Q 005980 493 AHHQPMLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS--- 566 (666)
Q Consensus 493 ~~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~--- 566 (666)
+......+.+.+.|.+ .++.+..+||+++.++|.++++.|.++. +.+|++|+++++|||++++++||.++.+
T Consensus 216 lpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred ECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhcccccCceEEEEcCccccc
Confidence 9999999999999987 4789999999999999999999999887 7789999999999999999999998876
Q ss_pred -CCcch--------------hhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 567 -WTPGD--------------LIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 567 -wnp~~--------------~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++|.. +.||.||++|.+ +=..|+|+++.
T Consensus 294 ~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t~~ 336 (819)
T TIGR01970 294 RFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWSEE 336 (819)
T ss_pred ccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCCHH
Confidence 34443 789999999973 44568888764
No 81
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=4.3e-18 Score=166.67 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=207.3
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHH-HHHHHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQ-AIAVATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~-ala~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
+..|-|...+-.++. |..||=+..||+|||.. |+-++..+.+ .--.||++|+ .+..|-.+.|......-...+.
T Consensus 29 ~pTpiQ~~cIpkILe-Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE-GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCCchHhhhhHHHhc-ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEE
Confidence 567889999999998 77899999999999975 3333444322 2237999999 7888877777654432223334
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH------HHhcCCccEEEEcCccccCChhHH-HHHHh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN------ILMSSNFKIVIADESHFLKNAQAK-RTAAT 320 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~------~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~ 320 (666)
+++++.+-.. .........+++|+|++.+..... .+...+...+++|||.++-+.... ....+
T Consensus 108 vivGG~d~i~----------qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i 177 (442)
T KOG0340|consen 108 VIVGGTDMIM----------QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGI 177 (442)
T ss_pred EEEccHHHhh----------hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhh
Confidence 4433221111 112233456688999888764432 122235679999999999775432 22333
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
..-++..+..+++|||- .+...+++.
T Consensus 178 ~e~lP~~RQtLlfSATi-td~i~ql~~----------------------------------------------------- 203 (442)
T KOG0340|consen 178 EECLPKPRQTLLFSATI-TDTIKQLFG----------------------------------------------------- 203 (442)
T ss_pred hccCCCccceEEEEeeh-hhHHHHhhc-----------------------------------------------------
Confidence 33333556789999995 122211110
Q ss_pred hhhhcCCccc--EEEEEe--cC-CHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHH
Q 005980 401 DVLAQLPVKR--RQQVFL--DV-AEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV 475 (666)
Q Consensus 401 ~v~~~lp~~~--~~~v~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l 475 (666)
.|... -..+.. .. ..+. +...+...+...|-..+
T Consensus 204 -----~~i~k~~a~~~e~~~~vstvet------------------------------------L~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 204 -----CPITKSIAFELEVIDGVSTVET------------------------------------LYQGYILVSIDVKDAYL 242 (442)
T ss_pred -----CCcccccceEEeccCCCCchhh------------------------------------hhhheeecchhhhHHHH
Confidence 00000 000000 00 0000 00111122333455567
Q ss_pred HHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCc
Q 005980 476 LDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTL 554 (666)
Q Consensus 476 ~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL 554 (666)
...|....+ ....++||++...+.+.|...|+..++++..+|+.+++.+|...+.+|+.+. ..+|++|++++.|||+
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~--~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA--ARILIATDVASRGLDI 320 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC--ccEEEEechhhcCCCC
Confidence 777777654 4678999999999999999999999999999999999999999999999988 6789999999999999
Q ss_pred ccCCEEEEecCCCCcchhhhhhhhhhccCCCCc
Q 005980 555 TAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 555 ~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
+..+.||++|.|-.|..|++|.||..|-|....
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999887643
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.4e-18 Score=185.94 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..+|.+.+......+.++||||......+.+...|.+.|+++..++|..+ +|+..+..|..+. ..++++|+
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~--g~VlVATd 529 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR--GRITVATN 529 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC--CcEEEEcc
Confidence 3456999999999887667889999999999999999999999999999999865 5556666666555 24789999
Q ss_pred ccccccCcc---cCC-----EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 547 AGGVGLTLT---AAS-----TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 547 a~~~GlnL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
.+|.|+|+. ... +||.+|.|-|...+.|++||++|.|..-.+. .++ |.|+.++....
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~~~ 594 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQSFL 594 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHhhh
Confidence 999999998 444 9999999999999999999999999764432 223 34666665443
No 83
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=5.1e-18 Score=200.77 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=87.1
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCC---------------------------------ceEEEEECCCCHHHHHHHHH
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKK---------------------------------VHCIRIDGGTPPASRQALVT 530 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g---------------------------------~~~~~i~G~~~~~~R~~~i~ 530 (666)
..+.++|||++.+..++.+...|++.. +.+...||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 467899999999999999998886531 12456889999999999999
Q ss_pred HhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhcc
Q 005980 531 EFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRI 582 (666)
Q Consensus 531 ~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 582 (666)
.|++|. ..+|++|.+++.|||+..+++||+++.|.+...+.||+||++|.
T Consensus 322 ~fK~G~--LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALKSGE--LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHhCC--ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999998 57899999999999999999999999999999999999999996
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.80 E-value=1.2e-17 Score=188.60 Aligned_cols=367 Identities=15% Similarity=0.142 Sum_probs=240.7
Q ss_pred hhhhcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCCcch-HHHHHHHHHHh-c
Q 005980 169 HIESKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPSSLR-LHWAAMIQQWL-N 240 (666)
Q Consensus 169 ~~~~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~sl~-~qW~~e~~~~~-~ 240 (666)
.+...-.|-|..|++...+- ...=++|.++|.|||-+|+-++- ...+.+-+.|+||+.++ .|-.+-|++.+ +
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 34456788999999987642 11227888899999999984433 34566789999999765 45555555544 4
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHh
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAAT 320 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~ 320 (666)
+| .+|-+.. ...+.+ +...+...... ..-+++|-|+..+.+.... .+.++|||||=|++.-..--..|.+
T Consensus 670 fP-V~I~~LS-RF~s~k-E~~~il~~la~----G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGVk~KEkLK~L 739 (1139)
T COG1197 670 FP-VRIEVLS-RFRSAK-EQKEILKGLAE----GKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGVKHKEKLKEL 739 (1139)
T ss_pred CC-eeEEEec-ccCCHH-HHHHHHHHHhc----CCccEEEechHhhCCCcEE---ecCCeEEEechhhcCccHHHHHHHH
Confidence 43 2332221 111111 11111111111 2345889999888766543 2678999999999977554455554
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
. ..-.++-|||||++-.+. ..|.+ +++
T Consensus 740 r----~~VDvLTLSATPIPRTL~-------------------------------------------Msm~G------iRd 766 (1139)
T COG1197 740 R----ANVDVLTLSATPIPRTLN-------------------------------------------MSLSG------IRD 766 (1139)
T ss_pred h----ccCcEEEeeCCCCcchHH-------------------------------------------HHHhc------chh
Confidence 4 678899999999865431 11111 111
Q ss_pred hhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 401 DVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 401 ~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
--.-.-||..+..|.--+.+.+-. .+.+-|.
T Consensus 767 lSvI~TPP~~R~pV~T~V~~~d~~-------------------------------------------------~ireAI~ 797 (1139)
T COG1197 767 LSVIATPPEDRLPVKTFVSEYDDL-------------------------------------------------LIREAIL 797 (1139)
T ss_pred hhhccCCCCCCcceEEEEecCChH-------------------------------------------------HHHHHHH
Confidence 111234555544433222221100 1233333
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
.-+.+|.++....+.++.+..+...|+.. ..++.+.||+|+..+-++++..|.++. ..+|+||.....|||++.||
T Consensus 798 REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~--~dVLv~TTIIEtGIDIPnAN 875 (1139)
T COG1197 798 RELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGE--YDVLVCTTIIETGIDIPNAN 875 (1139)
T ss_pred HHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCC--CCEEEEeeeeecCcCCCCCc
Confidence 44467889888899999999999999886 668999999999999999999999998 77899999999999999999
Q ss_pred EEEEecCC-CCcchhhhhhhhhhccCCCCcEEEEEEEeCC-----CHHHHHHHHHH-------HHHHHHhhhhcCCcccc
Q 005980 559 TVIFAELS-WTPGDLIQAEDRAHRIGQVSSVNVYYLLAND-----TVDDIVWDVVR-------SKLENLGQVLDGHENSL 625 (666)
Q Consensus 559 ~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~-----tiee~i~~~~~-------~K~~~~~~~l~~~~~~~ 625 (666)
++|+-+.. .--+++-|-.||++|- ++..+.|.++..+ ..+.++..+.+ -|..+-+.-+.|..+.+
T Consensus 876 TiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlL 953 (1139)
T COG1197 876 TIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLL 953 (1139)
T ss_pred eEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhcccccccc
Confidence 99986644 5678899999999994 3567788888753 23333333322 23333444566777777
Q ss_pred ccccccccCChh---hHhhHHHHHHhccC
Q 005980 626 EVSSSQIRSSPA---KQKTLDSFLKRCNN 651 (666)
Q Consensus 626 ~~~~~~~~~~~~---~~~~l~~~~~~~~~ 651 (666)
..+++..-.+.. ..+.|++.++....
T Consensus 954 G~eQSG~I~~VGf~LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 954 GEEQSGHIESVGFDLYMEMLEEAIAALKG 982 (1139)
T ss_pred CccccCchheecHHHHHHHHHHHHHHHhc
Confidence 777776655542 66778888877665
No 85
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.80 E-value=3.9e-18 Score=176.26 Aligned_cols=317 Identities=19% Similarity=0.218 Sum_probs=213.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHH-HHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQA-IAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
..|.|-|.-+|...+-.|.+.++...|++|||+++ +|-+. .+...++.|.+||- .|..|=.++|.+.+. +....+
T Consensus 215 ~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs--~Lglkv 292 (830)
T COG1202 215 EELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYS--KLGLKV 292 (830)
T ss_pred ceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhh--cccceE
Confidence 37999999999988777888899999999999986 33333 33458899999999 677777778877652 111111
Q ss_pred -EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCccccCChh--HH---HHHHhh
Q 005980 249 -VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHFLKNAQ--AK---RTAATL 321 (666)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~--s~---~~~~~~ 321 (666)
+.-+....+.. ......+...+.++++-||+-+.-.... -.-.+.+.||+||.|.+.... .. ....+.
T Consensus 293 airVG~srIk~~-----~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 293 AIRVGMSRIKTR-----EEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred EEEechhhhccc-----CCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 11111111100 0001223345677999999988644332 122468899999999997621 11 112222
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.+. ...+.+.||||- .+|.||...|. ....+.
T Consensus 368 ~l~-~~AQ~i~LSATV--gNp~elA~~l~----------------------------------------a~lV~y----- 399 (830)
T COG1202 368 YLF-PGAQFIYLSATV--GNPEELAKKLG----------------------------------------AKLVLY----- 399 (830)
T ss_pred HhC-CCCeEEEEEeec--CChHHHHHHhC----------------------------------------CeeEee-----
Confidence 222 356779999997 55655544332 111100
Q ss_pred hhhcCC-cccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 402 VLAQLP-VKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 402 v~~~lp-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
..-| |..+|.+++.-.. .|.+.+..+++
T Consensus 400 --~~RPVplErHlvf~~~e~-------------------------------------------------eK~~ii~~L~k 428 (830)
T COG1202 400 --DERPVPLERHLVFARNES-------------------------------------------------EKWDIIARLVK 428 (830)
T ss_pred --cCCCCChhHeeeeecCch-------------------------------------------------HHHHHHHHHHH
Confidence 1112 2345555554222 23333333333
Q ss_pred HHH----Hc--CCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCc
Q 005980 481 TVI----EA--GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTL 554 (666)
Q Consensus 481 ~~~----~~--g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL 554 (666)
.-. .. ..++|||+.++.-...|...|..+|++..-+|++.+..+|+.+-..|.++. ..++++|.|++.|+|+
T Consensus 429 ~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~--l~~VVTTAAL~AGVDF 506 (830)
T COG1202 429 REFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQE--LAAVVTTAALAAGVDF 506 (830)
T ss_pred HHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCC--cceEeehhhhhcCCCC
Confidence 322 12 247999999999999999999999999999999999999999999999998 7789999999999999
Q ss_pred ccCCEEEE----ec-CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 555 TAASTVIF----AE-LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 555 ~~a~~VI~----~d-~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++.. ||| +. -|-+|..+.|..||++|.+-...-.||-++-.|
T Consensus 507 PASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 507 PASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred chHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9654 444 33 345999999999999999988777788787654
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.79 E-value=2.1e-17 Score=187.16 Aligned_cols=321 Identities=20% Similarity=0.212 Sum_probs=195.5
Q ss_pred hhcCchHHHHHHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcE
Q 005980 171 ESKLLPFQRDGVRFALQH--GGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i 246 (666)
...|.++|.+++..+... +..+++..+||+|||.+.+.++.. +.....+||++|+ .|..|+.+.+.++++. .+
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~---~v 218 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGA---PV 218 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---CE
Confidence 347999999999998873 456888899999999998766543 3446789999999 8999999999998753 33
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh--H----HHHHHh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ--A----KRTAAT 320 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~--s----~~~~~~ 320 (666)
.++.+......+ ...+... ......|+|.|...+. +.-.++++||+||+|...-.. . .+..+.
T Consensus 219 ~~~~s~~s~~~r--~~~~~~~----~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 219 AVLHSGLSDGER--LDEWRKA----KRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred EEEECCCCHHHH--HHHHHHH----HcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 333322222111 1111110 0112458899886653 122468999999999764211 1 111111
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
..-.......+++||||.. ..++.. ..+.+-+-++..
T Consensus 288 ~ra~~~~~~~il~SATps~---~s~~~~----------------------------------------~~g~~~~~~l~~ 324 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSL---ESLANA----------------------------------------QQGRYRLLRLTK 324 (679)
T ss_pred HHhhccCCCEEEEcCCCCH---HHHHHH----------------------------------------hccceeEEEecc
Confidence 1111134567889999931 111110 000110111111
Q ss_pred hhh-hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 401 DVL-AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 401 ~v~-~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
... ..+|. ...+++..+... .....--..+++.+
T Consensus 325 r~~~~~~p~----v~~id~~~~~~~-----------------------------------------~~~~~ls~~l~~~i 359 (679)
T PRK05580 325 RAGGARLPE----VEIIDMRELLRG-----------------------------------------ENGSFLSPPLLEAI 359 (679)
T ss_pred ccccCCCCe----EEEEechhhhhh-----------------------------------------cccCCCCHHHHHHH
Confidence 110 11221 222333221000 00000012355555
Q ss_pred HHHHHcCCEEEEEecc------------------------------------------------------------HHHH
Q 005980 480 ETVIEAGCKFLIFAHH------------------------------------------------------------QPML 499 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~------------------------------------------------------------~~~~ 499 (666)
.+.+++|+++|||.+. ....
T Consensus 360 ~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~ 439 (679)
T PRK05580 360 KQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGT 439 (679)
T ss_pred HHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccH
Confidence 5555667777776442 1245
Q ss_pred HHHHHHHHhC--CceEEEEECCCC--HHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC--CC-c---
Q 005980 500 DAIHQLFLKK--KVHCIRIDGGTP--PASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS--WT-P--- 569 (666)
Q Consensus 500 ~~l~~~L~~~--g~~~~~i~G~~~--~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~--wn-p--- 569 (666)
+.+++.|.+. +.++.++||.+. ..++++++++|.+++ ..+|++|+..+.|+|++..+.|++++.+ -+ |
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~--~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE--ADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC--CCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 6788888776 789999999986 467999999999987 5678999999999999999999877654 22 2
Q ss_pred ------chhhhhhhhhhccCCCCcEEEEEEEe
Q 005980 570 ------GDLIQAEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 570 ------~~~~Qa~gR~~R~Gq~~~V~v~~lv~ 595 (666)
..+.|+.||++|.|....|.+...-.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 56899999999988777776655443
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.9e-18 Score=171.58 Aligned_cols=307 Identities=18% Similarity=0.263 Sum_probs=202.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHH--HHhc--------CCCCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAV--ATCF--------RDVWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~--~~~~--------~~~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
++.|-|-++.--+++ |..+|-...||.|||+.-|.- +... +..-.+|++.|+ .|..|-+-|..++---
T Consensus 242 KPtPIqSQaWPI~LQ-G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQ-GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN 320 (629)
T ss_pred CCCcchhcccceeec-CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc
Confidence 566777776655565 667787888999999987632 2111 112248999999 7888888888877421
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH--HHHhcCCccEEEEcCccccCCh--hHHHH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ--NILMSSNFKIVIADESHFLKNA--QAKRT 317 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~--~s~~~ 317 (666)
. .+..+-+++.++... -.+...+..++|+|+..|.... ..+......++|+|||.++... ..+..
T Consensus 321 g----~ksvc~ygggnR~eq-------ie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIr 389 (629)
T KOG0336|consen 321 G----LKSVCVYGGGNRNEQ-------IEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIR 389 (629)
T ss_pred C----cceEEEecCCCchhH-------HHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHH
Confidence 1 112222333333211 0112234457789998887653 2333446789999999999764 44555
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+.++.+. ..+..++.|||-- .. ....... .++.++++.-
T Consensus 390 killdiR-PDRqtvmTSATWP-~~------------------VrrLa~s---------------------Y~Kep~~v~v 428 (629)
T KOG0336|consen 390 KILLDIR-PDRQTVMTSATWP-EG------------------VRRLAQS---------------------YLKEPMIVYV 428 (629)
T ss_pred HHhhhcC-CcceeeeecccCc-hH------------------HHHHHHH---------------------hhhCceEEEe
Confidence 6666552 4566788888841 00 0011111 1111111100
Q ss_pred hhhhhhhcCCcc-cEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHH
Q 005980 398 LKKDVLAQLPVK-RRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476 (666)
Q Consensus 398 ~k~~v~~~lp~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~ 476 (666)
-.-++ ...+ ..+.+.+ ...+.|+..+.
T Consensus 429 GsLdL---~a~~sVkQ~i~v-------------------------------------------------~~d~~k~~~~~ 456 (629)
T KOG0336|consen 429 GSLDL---VAVKSVKQNIIV-------------------------------------------------TTDSEKLEIVQ 456 (629)
T ss_pred cccce---eeeeeeeeeEEe-------------------------------------------------cccHHHHHHHH
Confidence 00000 0000 0011111 12233554444
Q ss_pred HHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc
Q 005980 477 DYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA 556 (666)
Q Consensus 477 ~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~ 556 (666)
.++..+ ....|+|||+....++|-|..-|.-.|+....+||...+.+|+..++.|+.|. ..+|++|+.++.|||+++
T Consensus 457 ~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~--vrILvaTDlaSRGlDv~D 533 (629)
T KOG0336|consen 457 FFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE--VRILVATDLASRGLDVPD 533 (629)
T ss_pred HHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc--eEEEEEechhhcCCCchh
Confidence 444443 57889999999999999999999999999999999999999999999999998 778999999999999999
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhccCCCCc
Q 005980 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 557 a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
..||++||.|-|-..|++|+||.+|.|.+-.
T Consensus 534 iTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 534 ITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred cceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999999999999997654
No 88
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.78 E-value=7.9e-17 Score=184.38 Aligned_cols=304 Identities=16% Similarity=0.141 Sum_probs=185.4
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGS 256 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~ 256 (666)
+..+...++.+..+|+..+||+|||.+..-.+.. ....++++|++|+ .+..|-...+.+.++......+.+.. .+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v--r~~ 87 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM--RAE 87 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe--cCc
Confidence 3444455555778999999999999987644432 2234589999999 55677777777666543322221111 111
Q ss_pred CccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCcccc-CChhH--HHHHHhhhhhhhcceEEE
Q 005980 257 NRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHFL-KNAQA--KRTAATLPIIKKAQYALL 332 (666)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~~-kn~~s--~~~~~~~~l~~~~~~~ll 332 (666)
.. ......+.|+|...+.+.... ..-.++++||+||+|.. -+... .....+...+....+.++
T Consensus 88 ~~-------------~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 88 SK-------------VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred cc-------------cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 10 111234778899888765432 22347899999999973 22211 111122221123457899
Q ss_pred eeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEE
Q 005980 333 LSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQ 412 (666)
Q Consensus 333 LTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~ 412 (666)
+|||.-...+. .++. ...++. ... ...|. .
T Consensus 155 mSATl~~~~l~------~~~~-------------------------------------~~~~I~-~~g---r~~pV---~ 184 (812)
T PRK11664 155 MSATLDNDRLQ------QLLP-------------------------------------DAPVIV-SEG---RSFPV---E 184 (812)
T ss_pred EecCCCHHHHH------HhcC-------------------------------------CCCEEE-ecC---ccccc---e
Confidence 99998321110 1110 000000 000 01111 1
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEE
Q 005980 413 QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIF 492 (666)
Q Consensus 413 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF 492 (666)
..++....... +... -...+...+. +.+..+|||
T Consensus 185 ~~y~~~~~~~~--~~~~-----------------------------------------v~~~l~~~l~---~~~g~iLVF 218 (812)
T PRK11664 185 RRYQPLPAHQR--FDEA-----------------------------------------VARATAELLR---QESGSLLLF 218 (812)
T ss_pred EEeccCchhhh--HHHH-----------------------------------------HHHHHHHHHH---hCCCCEEEE
Confidence 12222221110 0000 0001222222 246789999
Q ss_pred eccHHHHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCc
Q 005980 493 AHHQPMLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTP 569 (666)
Q Consensus 493 ~~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp 569 (666)
+.....++.+.+.|.. .++.+..+||+++.++|.++++.|.++. +.+|++|+++++|||++++++||.++.+-.+
T Consensus 219 lpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~--rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 219 LPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR--RKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred cCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC--eEEEEecchHHhcccccCceEEEECCCcccc
Confidence 9999999999999987 5788999999999999999999998886 7789999999999999999999997765322
Q ss_pred ------------------chhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 570 ------------------GDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 570 ------------------~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
..+.||.||++|.+ +-..|+|+++..
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~~ 340 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKEQ 340 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHHH
Confidence 36899999999973 557788887653
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=189.82 Aligned_cols=336 Identities=17% Similarity=0.190 Sum_probs=220.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC--CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR--DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~--~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.||+||.+|++.+.. |..+|+.-.||+|||...+..+. .+. ...+.|+|-|+ .|.....+.+.++..--+..+..
T Consensus 70 ~lY~HQ~~A~~~~~~-G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~ 148 (851)
T COG1205 70 RLYSHQVDALRLIRE-GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTF 148 (851)
T ss_pred cccHHHHHHHHHHHC-CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCccee
Confidence 499999999998887 78999999999999998765443 332 34568999999 67777899999997532222322
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH------HHHhcCCccEEEEcCccccCCh-hHHHHHHhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ------NILMSSNFKIVIADESHFLKNA-QAKRTAATL 321 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~------~~l~~~~~~~vIiDEaH~~kn~-~s~~~~~~~ 321 (666)
.. ++|....... ..-......|++|+|+++.... -.+...++.+||+||+|.+++- +|.....++
T Consensus 149 ~~--y~Gdt~~~~r------~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 149 GR--YTGDTPPEER------RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred ee--ecCCCChHHH------HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 22 2222221100 0112245669999999997522 1122335899999999999873 444444444
Q ss_pred hhhhh------cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhh
Q 005980 322 PIIKK------AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMI 395 (666)
Q Consensus 322 ~l~~~------~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~l 395 (666)
++... ....++.|||- ++..+|...+....
T Consensus 221 RL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~------------------------ 256 (851)
T COG1205 221 RLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRD------------------------ 256 (851)
T ss_pred HHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCc------------------------
Confidence 44332 35779999996 22333333221110
Q ss_pred hehhhh-hhh-cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHH
Q 005980 396 RRLKKD-VLA-QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP 473 (666)
Q Consensus 396 rr~k~~-v~~-~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~ 473 (666)
-.. +-. .-|.-.++.+...........- .-.++..
T Consensus 257 ---f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~----------------------------------------~r~s~~~ 293 (851)
T COG1205 257 ---FEVPVDEDGSPRGLRYFVRREPPIRELAES----------------------------------------IRRSALA 293 (851)
T ss_pred ---ceeeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------------cccchHH
Confidence 000 101 1122222222222211110000 0113444
Q ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHH----HHHHhCC----ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIH----QLFLKKK----VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 474 ~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~----~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
.+..++.....++-|.|+|+.+...+..+. ..+...+ ..+..+.|++...+|.++...|+.++ ..++++|
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~--~~~~~st 371 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE--LLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC--ccEEecc
Confidence 555666667779999999999999998886 4444445 56889999999999999999999999 6789999
Q ss_pred cccccccCcccCCEEEEecCCC-CcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 546 KAGGVGLTLTAASTVIFAELSW-TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 546 ~a~~~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
.|+..|+++...+.||....|- +...+.|+.||++|.+|..-+ +...-.+.+|..++..-.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v~~~~~~d~yy~~~p~ 433 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVVLRSDPLDSYYLRHPE 433 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEEeCCCccchhhhhCcH
Confidence 9999999999999999999998 789999999999999954433 333336677777665433
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.78 E-value=4.9e-17 Score=185.56 Aligned_cols=337 Identities=16% Similarity=0.095 Sum_probs=187.2
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhc--CCCCc
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLN--IPPSE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~--~~~~~ 245 (666)
..++|+|..+... ...++-+||-.+||+|||..|+.++..+. ....+++..|+ .+..+....+.+|+. .+...
T Consensus 285 ~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4789999977433 23456678889999999999998877542 24579999999 677777787776542 11122
Q ss_pred EEEEEecCCCCCccceeE-EecC----C--------------CCCCCCCCcEEEEeHHHHHHH--------HHHHhcCCc
Q 005980 246 IVVVLSQLGGSNRSGFTI-VSSN----T--------------KRNIPLDGLFNIISYDVVLKL--------QNILMSSNF 298 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~-~~~~----~--------------~~~~~~~~~v~I~sy~~l~~~--------~~~l~~~~~ 298 (666)
+... .+....+. .+.. .... . ......-..|+|+|.+.+... ...+ ...-
T Consensus 364 v~L~-Hg~a~l~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~-~La~ 440 (878)
T PRK09694 364 LILA-HGNSRFNH-LFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF-GLGR 440 (878)
T ss_pred eEee-cCcchhhh-hhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH-hhcc
Confidence 2222 11111110 0000 0000 0 001112246889999888632 1111 2234
Q ss_pred cEEEEcCccccCChhHHHHHHhhhhh-hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCccccccc
Q 005980 299 KIVIADESHFLKNAQAKRTAATLPII-KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQ 377 (666)
Q Consensus 299 ~~vIiDEaH~~kn~~s~~~~~~~~l~-~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~ 377 (666)
.+||+||+|.+-.........+...+ .....+++||||+-..--.+|...+ .... . ......| .
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~---~~~~--~-~~~~~~Y---------P 505 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY---GGHD--P-VELSSAY---------P 505 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh---cccc--c-ccccccc---------c
Confidence 59999999999543333333333322 2346689999998221111111110 0000 0 0000000 0
Q ss_pred CCCCHHHHHHHhhhhhhhhehhhhhh-hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhH
Q 005980 378 GASNHEELHNLMKATVMIRRLKKDVL-AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTE 456 (666)
Q Consensus 378 ~~~~~~~l~~ll~~~~~lrr~k~~v~-~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (666)
..+ ... ..-..+..-... ..++. ...+.+..-.
T Consensus 506 lvt-------~~~-~~~~~~~~~~~~~~~~~~--~~~v~v~~~~------------------------------------ 539 (878)
T PRK09694 506 LIT-------WRG-VNGAQRFDLSAHPEQLPA--RFTIQLEPIC------------------------------------ 539 (878)
T ss_pred ccc-------ccc-cccceeeeccccccccCc--ceEEEEEeec------------------------------------
Confidence 000 000 000000000000 00111 1111111000
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCC---ceEEEEECCCCHHHH----HHHH
Q 005980 457 KNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKK---VHCIRIDGGTPPASR----QALV 529 (666)
Q Consensus 457 ~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R----~~~i 529 (666)
..... -...+++.+.+....|++++||++.++.+..+++.|++.+ .++..+||+++..+| ++++
T Consensus 540 --------~~~~~-~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl 610 (878)
T PRK09694 540 --------LADML-PDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVI 610 (878)
T ss_pred --------ccccc-CHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 00000 1123445555555689999999999999999999999865 679999999999999 4678
Q ss_pred HHh-cCCCC-ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCC
Q 005980 530 TEF-QEKDD-VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQV 585 (666)
Q Consensus 530 ~~F-~~~~~-~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 585 (666)
+.| +++.. ...+|++|.+.+.|||+ +++.+|....| ...++||+||++|.|..
T Consensus 611 ~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 611 ENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 889 44431 13689999999999999 57888775544 56899999999999864
No 91
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.77 E-value=4.8e-19 Score=174.56 Aligned_cols=322 Identities=20% Similarity=0.291 Sum_probs=205.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHH----HHHHHh--c-----CCCCc-EEEEeCC-cchHHHHHHHHHHh
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQA----IAVATC--F-----RDVWP-VLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a----la~~~~--~-----~~~~~-~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
.+.|-|.+|+--.+. |+..|=..-||+|||++. ++++.. + +..+| -|||||+ .|..|-.+-+..|+
T Consensus 192 ~PTpIQvQGlPvvLs-GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCceeecCcceEee-cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 567889999887776 444443344999999763 233221 1 34667 5999999 67666555555543
Q ss_pred ------cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCC
Q 005980 240 ------NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 240 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn 311 (666)
|.|.......+++. .-++. -..+..+.++++.|+..+...... +...-..++.+|||.++-.
T Consensus 271 ~~L~e~g~P~lRs~LciGG~--~v~eq--------l~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiD 340 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGV--PVREQ--------LDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMID 340 (610)
T ss_pred HHHHhcCChhhhhhhhhcCc--cHHHH--------HHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhh
Confidence 22322222222111 00100 111223445788898877654321 1111245789999999876
Q ss_pred hhHH-HHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhh
Q 005980 312 AQAK-RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMK 390 (666)
Q Consensus 312 ~~s~-~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~ 390 (666)
.+.. -.+.+....+.-+..+++|||-- ..++..-+
T Consensus 341 mGFEddir~iF~~FK~QRQTLLFSATMP--------------------------------------------~KIQ~FAk 376 (610)
T KOG0341|consen 341 MGFEDDIRTIFSFFKGQRQTLLFSATMP--------------------------------------------KKIQNFAK 376 (610)
T ss_pred ccchhhHHHHHHHHhhhhheeeeecccc--------------------------------------------HHHHHHHH
Confidence 4432 33444555545677899999951 01111111
Q ss_pred hhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccc
Q 005980 391 ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEA 470 (666)
Q Consensus 391 ~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (666)
. .|- ..|.+.....-... .+.+++. -.....+
T Consensus 377 S-------------ALV----KPvtvNVGRAGAAs-ldViQev------------------------------EyVkqEa 408 (610)
T KOG0341|consen 377 S-------------ALV----KPVTVNVGRAGAAS-LDVIQEV------------------------------EYVKQEA 408 (610)
T ss_pred h-------------hcc----cceEEecccccccc-hhHHHHH------------------------------HHHHhhh
Confidence 0 000 01122211111000 0001110 0012345
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccccc
Q 005980 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGV 550 (666)
Q Consensus 471 Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~ 550 (666)
|+-.+++.|.. ...+|||||......|.|.++|.-+|+..+.|||+..+++|...++.|+.+. +.+|++|++++-
T Consensus 409 KiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk--KDVLVATDVASK 483 (610)
T KOG0341|consen 409 KIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK--KDVLVATDVASK 483 (610)
T ss_pred hhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC--CceEEEecchhc
Confidence 77777777665 6889999999999999999999999999999999999999999999999998 788999999999
Q ss_pred ccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 005980 551 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 604 (666)
Q Consensus 551 GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~ 604 (666)
|||+++..+||+||.|-.-..|..||||.+|-|.+.-. -.|+.+++-+..++
T Consensus 484 GLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLl 535 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLL 535 (610)
T ss_pred cCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHH
Confidence 99999999999999999999999999999999976533 23455555444443
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.3e-15 Score=148.89 Aligned_cols=303 Identities=18% Similarity=0.248 Sum_probs=199.2
Q ss_pred hhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCc
Q 005980 171 ESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~ 245 (666)
.++|-|+|+.+-+.++ ++....|+..-+|+|||-+....+. .+..++.+.|..|. .++..-...++.-+ +..+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF--~~~~ 172 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAF--SNCD 172 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhh--ccCC
Confidence 4789999999988775 3455678888899999987765544 44668899999998 67766666666554 2234
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC-hhHHHHHHhhhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN-AQAKRTAATLPII 324 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn-~~s~~~~~~~~l~ 324 (666)
|...+++ + ... ....++|+|-..+.+..+ -||++|+||...+.= .+.....++..-.
T Consensus 173 I~~Lyg~--S-------------~~~--fr~plvVaTtHQLlrFk~-----aFD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 173 IDLLYGD--S-------------DSY--FRAPLVVATTHQLLRFKQ-----AFDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred eeeEecC--C-------------chh--ccccEEEEehHHHHHHHh-----hccEEEEeccccccccCCHHHHHHHHHhh
Confidence 4433321 1 111 113466666666666554 589999999998852 2222333444333
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHh-hhh----hhhhehh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLM-KAT----VMIRRLK 399 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~----~~lrr~k 399 (666)
+.....+.|||||- .+|.+-+ +.. .+-+|.
T Consensus 231 k~~g~~IylTATp~--------------------------------------------k~l~r~~~~g~~~~~klp~Rf- 265 (441)
T COG4098 231 KKEGATIYLTATPT--------------------------------------------KKLERKILKGNLRILKLPARF- 265 (441)
T ss_pred cccCceEEEecCCh--------------------------------------------HHHHHHhhhCCeeEeecchhh-
Confidence 35567799999992 1111111 100 000111
Q ss_pred hhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHH-HHHHH
Q 005980 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIP-AVLDY 478 (666)
Q Consensus 400 ~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~-~l~~~ 478 (666)
-...||... .+++..-... + ...|+. .|..+
T Consensus 266 --H~~pLpvPk--f~w~~~~~k~-------l-------------------------------------~r~kl~~kl~~~ 297 (441)
T COG4098 266 --HGKPLPVPK--FVWIGNWNKK-------L-------------------------------------QRNKLPLKLKRW 297 (441)
T ss_pred --cCCCCCCCc--eEEeccHHHH-------h-------------------------------------hhccCCHHHHHH
Confidence 112333322 2232211100 0 112444 68888
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-C-ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-K-VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA 556 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~ 556 (666)
|+.....|..++||.....+++.....|+.. + .....++..+. .|.+.+++|++|. ..+|++|..+..|++++.
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~--~~lLiTTTILERGVTfp~ 373 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGK--ITLLITTTILERGVTFPN 373 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCc--eEEEEEeehhhccccccc
Confidence 9888889999999999999999999999554 3 34456666654 8999999999998 889999999999999999
Q ss_pred CCEEEEecCC--CCcchhhhhhhhhhccCCCCcEEEEEEE
Q 005980 557 ASTVIFAELS--WTPGDLIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 557 a~~VI~~d~~--wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
.++.|+-.-. ++...++|-.||++|--....-.|++|.
T Consensus 374 vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 374 VDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 9999987655 8999999999999996654333344443
No 93
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.5e-18 Score=167.34 Aligned_cols=310 Identities=19% Similarity=0.249 Sum_probs=206.8
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhc---CCCCcEEEEeCC-cc---hHHHHHHHHHHhcCCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCF---RDVWPVLILTPS-SL---RLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~---~~~~~~LIv~P~-sl---~~qW~~e~~~~~~~~~~ 244 (666)
.+-|.|.+++--++. |..++.-...|.|||-.-+- .+... ...-..+|++|+ .| .+|-+.++.++++
T Consensus 107 kPSPiQeesIPiaLt-GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~---- 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT-GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG---- 181 (459)
T ss_pred CCCCccccccceeec-chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC----
Confidence 345778888877775 44555556799999964322 11222 123358999998 44 4567777777774
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~ 321 (666)
+.+....++.+-+.++- ......+++|.|+..+...... -.-....++|+|||..+.+...+ ....+.
T Consensus 182 -i~vmvttGGT~lrDDI~--------Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li 252 (459)
T KOG0326|consen 182 -IKVMVTTGGTSLRDDIM--------RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLI 252 (459)
T ss_pred -eEEEEecCCccccccee--------eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHH
Confidence 22333322322222211 1112445778899887765432 11124679999999999887654 345566
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.++++.+..++.|||-- -....|..+|-.. ++
T Consensus 253 ~~lP~~rQillySATFP-------------------~tVk~Fm~~~l~k---------------------Py-------- 284 (459)
T KOG0326|consen 253 SFLPKERQILLYSATFP-------------------LTVKGFMDRHLKK---------------------PY-------- 284 (459)
T ss_pred HhCCccceeeEEecccc-------------------hhHHHHHHHhccC---------------------cc--------
Confidence 67778999999999941 1233343333211 11
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
+..+.-+++..-..+|++... .+.|+..|-.+...
T Consensus 285 ---------~INLM~eLtl~GvtQyYafV~------------------------------------e~qKvhCLntLfsk 319 (459)
T KOG0326|consen 285 ---------EINLMEELTLKGVTQYYAFVE------------------------------------ERQKVHCLNTLFSK 319 (459)
T ss_pred ---------eeehhhhhhhcchhhheeeec------------------------------------hhhhhhhHHHHHHH
Confidence 111111222222233333322 22355555555555
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
+ .-...||||++....+.+.......|+++.++|..|.++.|..+..+|++|. ...|++++..-.|||+++.++||
T Consensus 320 L--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~--crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 320 L--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK--CRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred h--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc--cceeeehhhhhcccccceeeEEE
Confidence 4 4567899999999999999999999999999999999999999999999998 55688889999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhccCCCCcEEEEEEEe
Q 005980 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 562 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~ 595 (666)
++|.|.|+..|..|+||.+|.|--. ..+.|++
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 9999999999999999999999542 3344554
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.77 E-value=9.6e-17 Score=181.36 Aligned_cols=311 Identities=18% Similarity=0.144 Sum_probs=193.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCC-CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRD-VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~-~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
+|+|.|+++|...+..++++|++-+||+|||++|+.++.. +.+ .++++.|||. +|..+-.+++.+|-.+ .+.+.
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~---GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEEL---GIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhc---CCEEE
Confidence 7999999999977766889999999999999999866653 333 5799999999 8999888999844321 22222
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH--hcCCccEEEEcCccccCChh------HHHHHHhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL--MSSNFKIVIADESHFLKNAQ------AKRTAATL 321 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~------s~~~~~~~ 321 (666)
....+... .........|+|+||+.+....... .-...++||+||+|.+.... +-.++...
T Consensus 108 ~~TgD~~~-----------~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 108 ISTGDYDL-----------DDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred EecCCccc-----------chhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 22111110 1122245569999999886433221 12367999999999997651 11111111
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
. ....+.++||||- .+..|+...++. .++.+.. .+.-++|
T Consensus 177 ~--~~~~rivgLSATl--pN~~evA~wL~a---~~~~~~~-----------------------------rp~~l~~---- 216 (766)
T COG1204 177 L--NELIRIVGLSATL--PNAEEVADWLNA---KLVESDW-----------------------------RPVPLRR---- 216 (766)
T ss_pred h--CcceEEEEEeeec--CCHHHHHHHhCC---cccccCC-----------------------------CCccccc----
Confidence 1 0225889999996 344444333321 1100000 0000000
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
..|. ........-... .....+...+.+.+..
T Consensus 217 ---~v~~-~~~~~~~~~~~k--------------------------------------------~~~~~~~~~~~~~v~~ 248 (766)
T COG1204 217 ---GVPY-VGAFLGADGKKK--------------------------------------------TWPLLIDNLALELVLE 248 (766)
T ss_pred ---CCcc-ceEEEEecCccc--------------------------------------------cccccchHHHHHHHHH
Confidence 0000 000001000000 0011244566777777
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHh----C-----------C----------------------ceEEEEECCCCHHH
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLK----K-----------K----------------------VHCIRIDGGTPPAS 524 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~----~-----------g----------------------~~~~~i~G~~~~~~ 524 (666)
....|..+|||++.+.........|.. . + ..+..=|.+.+.++
T Consensus 249 ~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~ 328 (766)
T COG1204 249 SLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRED 328 (766)
T ss_pred HHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHH
Confidence 778999999999998877666655542 0 0 01334466788999
Q ss_pred HHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE----Eec-----CCCCcchhhhhhhhhhccCCCCc
Q 005980 525 RQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI----FAE-----LSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 525 R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI----~~d-----~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
|+-+-+.|+.+. .-+|+||.++..|+|||+=..|| .++ -.-++-.+.|..||++|.|=...
T Consensus 329 R~~vE~~Fr~g~--ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 329 RQLVEDAFRKGK--IKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred HHHHHHHHhcCC--ceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCC
Confidence 999999999998 67889999999999999766665 355 23356788999999999996543
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=5.3e-17 Score=177.49 Aligned_cols=297 Identities=19% Similarity=0.186 Sum_probs=179.8
Q ss_pred eeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCC
Q 005980 193 LLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
||..+||+|||.+++.++.. +...+.+||++|. +|..|+.+.+++.++. .+.+..+..+... ....+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~---~v~vlhs~~~~~e--r~~~~~~~~-- 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGS---QVAVLHSGLSDSE--KLQAWRKVK-- 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---cEEEEECCCCHHH--HHHHHHHHH--
Confidence 35567999999998866654 3456789999999 8999999999998753 3333322222211 111111111
Q ss_pred CCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCCh--hH-----HHHHHhhhhhhhcceEEEeeccCCCCChH
Q 005980 271 NIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNA--QA-----KRTAATLPIIKKAQYALLLSGTPALSRPI 343 (666)
Q Consensus 271 ~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~--~s-----~~~~~~~~l~~~~~~~llLTgTP~~n~~~ 343 (666)
..+..|+|+|...+.. .-.++++||+||.|...-. .. ......... ......+++||||. ++
T Consensus 74 --~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPs---le 142 (505)
T TIGR00595 74 --NGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPS---LE 142 (505)
T ss_pred --cCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCC---HH
Confidence 1234588999876632 2347899999999987421 11 111111111 14566799999994 11
Q ss_pred HHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh-hcCCcccEEEEEecCCHHH
Q 005980 344 ELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL-AQLPVKRRQQVFLDVAEKD 422 (666)
Q Consensus 344 el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~-~~lp~~~~~~v~~~~~~~~ 422 (666)
.++.. ..+..-+-.+..... ..+|. .. .+++..+.
T Consensus 143 s~~~~----------------------------------------~~g~~~~~~l~~r~~~~~~p~--v~--vid~~~~~ 178 (505)
T TIGR00595 143 SYHNA----------------------------------------KQKAYRLLVLTRRVSGRKPPE--VK--LIDMRKEP 178 (505)
T ss_pred HHHHH----------------------------------------hcCCeEEeechhhhcCCCCCe--EE--EEeccccc
Confidence 12111 000000111111111 11221 11 12222110
Q ss_pred HHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHH-----
Q 005980 423 MRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQP----- 497 (666)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~----- 497 (666)
.. ..=-..+++.+.+.+++|+++|||.+.+.
T Consensus 179 ~~--------------------------------------------~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 179 RQ--------------------------------------------SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred cc--------------------------------------------CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCee
Confidence 00 00012456666777778888888843321
Q ss_pred -------------------------------------------------------HHHHHHHHHHhC--CceEEEEECCC
Q 005980 498 -------------------------------------------------------MLDAIHQLFLKK--KVHCIRIDGGT 520 (666)
Q Consensus 498 -------------------------------------------------------~~~~l~~~L~~~--g~~~~~i~G~~ 520 (666)
-.+.+++.|.+. +.++.++|+.+
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 146778888876 78999999998
Q ss_pred CHHHH--HHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC--CC-c---------chhhhhhhhhhccCCCC
Q 005980 521 PPASR--QALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS--WT-P---------GDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 521 ~~~~R--~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~--wn-p---------~~~~Qa~gR~~R~Gq~~ 586 (666)
+...+ +++++.|.+++ ..+|++|...+.|+|++.++.|++++.+ .+ | ..+.|+.||++|.+...
T Consensus 295 ~~~~~~~~~~l~~f~~g~--~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g 372 (505)
T TIGR00595 295 TSRKGAHEALLNQFANGK--ADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPG 372 (505)
T ss_pred ccCccHHHHHHHHHhcCC--CCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCC
Confidence 76665 89999999987 6688999999999999999998766554 22 2 46899999999988777
Q ss_pred cEEEEEEEeCC
Q 005980 587 SVNVYYLLAND 597 (666)
Q Consensus 587 ~V~v~~lv~~~ 597 (666)
.|.|...-.++
T Consensus 373 ~viiqt~~p~~ 383 (505)
T TIGR00595 373 QVIIQTYNPNH 383 (505)
T ss_pred EEEEEeCCCCC
Confidence 77665544443
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.75 E-value=1.2e-16 Score=192.62 Aligned_cols=302 Identities=13% Similarity=0.105 Sum_probs=180.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
.++|.|.+++..+++ |..+++..+||+|||...+.++..+ .....+|||+|+ .|+.|..+.+..++......+.+..
T Consensus 79 ~pt~iQ~~~i~~il~-G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILR-GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 578999999999988 6688888899999998544333333 234579999999 8999999999987632111222222
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh-------------HHHH
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ-------------AKRT 317 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~-------------s~~~ 317 (666)
.+.+.........+... ...+..++|+|++.+......+...+++++|+||||.+...+ ....
T Consensus 158 ~~g~~s~~e~~~~~~~l----~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~ 233 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERI----ENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEII 233 (1638)
T ss_pred EeCCCCHHHHHHHHHHH----hcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHHH
Confidence 11111111100000000 011345889999988766554444679999999999985311 1111
Q ss_pred HHhhhhh-------------------------hhcce-EEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCc
Q 005980 318 AATLPII-------------------------KKAQY-ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGG 371 (666)
Q Consensus 318 ~~~~~l~-------------------------~~~~~-~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~ 371 (666)
..+..++ .+.+. .++.|||.-.. .+..
T Consensus 234 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~------------------------- 286 (1638)
T PRK14701 234 EKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRV------------------------- 286 (1638)
T ss_pred HHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHH-------------------------
Confidence 0000010 01112 34456665211 0000
Q ss_pred ccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCc-ccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHh
Q 005980 372 VFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPV-KRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQ 450 (666)
Q Consensus 372 ~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (666)
.++.....+ ++...-+. ......++.....
T Consensus 287 ---------------~l~~~~l~f-----~v~~~~~~lr~i~~~yi~~~~~----------------------------- 317 (1638)
T PRK14701 287 ---------------KLYRELLGF-----EVGSGRSALRNIVDVYLNPEKI----------------------------- 317 (1638)
T ss_pred ---------------HHhhcCeEE-----EecCCCCCCCCcEEEEEECCHH-----------------------------
Confidence 000000000 00000000 0111112211111
Q ss_pred hchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHH---HHHHHHHHHhCCceEEEEECCCCHHHHHH
Q 005980 451 SLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPM---LDAIHQLFLKKKVHCIRIDGGTPPASRQA 527 (666)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~---~~~l~~~L~~~g~~~~~i~G~~~~~~R~~ 527 (666)
.| ..+.+++.. .|...||||+.... ++.+...|...|+++..+||+ |..
T Consensus 318 -------------------~k-~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 318 -------------------IK-EHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred -------------------HH-HHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 12 245555554 26789999987654 589999999999999999994 889
Q ss_pred HHHHhcCCCCceEEEEec----cccccccCccc-CCEEEEecCCC---Ccchhhhhh-------------hhhhccCCC
Q 005980 528 LVTEFQEKDDVKAAVLSM----KAGGVGLTLTA-ASTVIFAELSW---TPGDLIQAE-------------DRAHRIGQV 585 (666)
Q Consensus 528 ~i~~F~~~~~~~v~L~st----~a~~~GlnL~~-a~~VI~~d~~w---np~~~~Qa~-------------gR~~R~Gq~ 585 (666)
.+++|.+|+ ..+|++| ++++.|||++. ..+|||++.|- +...+.|.. ||++|-|..
T Consensus 370 ~l~~F~~G~--~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 370 GFDLFEEGE--IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHcCC--CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999998 4556666 58899999998 99999999998 666555554 999998843
No 97
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.74 E-value=3e-17 Score=171.52 Aligned_cols=311 Identities=14% Similarity=0.154 Sum_probs=211.9
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC---CCCcEEEEeCC-cchHHHHHHHHHHhc-CCCCcEE
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR---DVWPVLILTPS-SLRLHWAAMIQQWLN-IPPSEIV 247 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~-~~~~~i~ 247 (666)
+.|-|..|+-.++. +...|+-.-.|+|||++-..++. .+. ..-..+||+|+ .+.-|-.+-+.+.+. +....+.
T Consensus 48 ptkiQaaAIP~~~~-kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~cs 126 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS-KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCS 126 (980)
T ss_pred CCchhhhhhhhhhc-ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceE
Confidence 45679888877766 55778888899999987433222 221 12348999999 677777777776653 2334444
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHHH--HHHhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAKR--TAATLPI 323 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~~--~~~~~~l 323 (666)
+.+++..... .. .-.....|+|.|+..+..... .+.-...+++|+|||..+-...+-+ ...+..-
T Consensus 127 vfIGGT~~~~-d~----------~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 127 VFIGGTAHKL-DL----------IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred EEecCchhhh-hh----------hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 5443221111 00 011234488999998876653 3445578899999999997644322 2223333
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
+++.+.++++|||--+| |- ..|...|+.+.++|-...++
T Consensus 196 lP~~rQv~a~SATYp~n----Ld------------------------------------n~Lsk~mrdp~lVr~n~~d~- 234 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRN----LD------------------------------------NLLSKFMRDPALVRFNADDV- 234 (980)
T ss_pred cchhheeeEEeccCchh----HH------------------------------------HHHHHHhcccceeecccCCc-
Confidence 45789999999996211 11 23444455555555444443
Q ss_pred hcCCcccEEEEEecCCH--HHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 404 AQLPVKRRQQVFLDVAE--KDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 404 ~~lp~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
.-+.-+.+..+.+.... ++++ -|++.|-+++..
T Consensus 235 ~L~GikQyv~~~~s~nnsveemr---------------------------------------------lklq~L~~vf~~ 269 (980)
T KOG4284|consen 235 QLFGIKQYVVAKCSPNNSVEEMR---------------------------------------------LKLQKLTHVFKS 269 (980)
T ss_pred eeechhheeeeccCCcchHHHHH---------------------------------------------HHHHHHHHHHhh
Confidence 12233333333333221 1110 144445555444
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
+ .-...||||....-++-+..+|...|+.+..|.|.|++.+|..+++.+++-. ..+|+||+..+.|||-..++.||
T Consensus 270 i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~--~rILVsTDLtaRGIDa~~vNLVV 345 (980)
T KOG4284|consen 270 I--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR--VRILVSTDLTARGIDADNVNLVV 345 (980)
T ss_pred C--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce--EEEEEecchhhccCCccccceEE
Confidence 3 3457799999999999999999999999999999999999999999998776 67899999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhccCCCC
Q 005980 562 FAELSWTPGDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 562 ~~d~~wnp~~~~Qa~gR~~R~Gq~~ 586 (666)
++|+|-+...|..||||++|.|...
T Consensus 346 NiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 346 NIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred ecCCCcchHHHHHHhhhcccccccc
Confidence 9999999999999999999999654
No 98
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=1.4e-16 Score=188.47 Aligned_cols=286 Identities=14% Similarity=0.139 Sum_probs=172.9
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
..++|.|..++..++. |..+++..+||+|||..++.++..+ ....++|||+|+ .|..|+.+++.+++......+..+
T Consensus 77 ~~p~~iQ~~~i~~il~-G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR-GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred CCCcHHHHHHHHHHhC-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 4688999999998887 6688888899999998666554443 235679999999 899999999999874211122211
Q ss_pred EecCCCCCcc-ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhH-------------H
Q 005980 250 LSQLGGSNRS-GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQA-------------K 315 (666)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s-------------~ 315 (666)
....++.... ....... ....+..|+|+|+..+......+.. +++++|+||||++...+. .
T Consensus 156 ~~~~Gg~~~~e~~~~~~~----l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e 230 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMER----IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEE 230 (1171)
T ss_pred eeecCCCCHHHHHHHHHH----HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHH
Confidence 1111221111 0000000 0012356899999999887776654 899999999999865210 0
Q ss_pred HHHHhh-------------------hh---hhhcce--EEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCc
Q 005980 316 RTAATL-------------------PI---IKKAQY--ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGG 371 (666)
Q Consensus 316 ~~~~~~-------------------~l---~~~~~~--~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~ 371 (666)
....+. .+ +.+.++ .++.|||+.+...... +...+
T Consensus 231 ~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~------l~r~l--------------- 289 (1171)
T TIGR01054 231 LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK------LFREL--------------- 289 (1171)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH------Hcccc---------------
Confidence 011110 00 011111 2446888533221100 00000
Q ss_pred ccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhh
Q 005980 372 VFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQS 451 (666)
Q Consensus 372 ~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (666)
+. +.+.+ . ..........++...
T Consensus 290 -----------------l~--~~v~~---~---~~~~r~I~~~~~~~~-------------------------------- 312 (1171)
T TIGR01054 290 -----------------LG--FEVGG---G---SDTLRNVVDVYVEDE-------------------------------- 312 (1171)
T ss_pred -----------------cc--eEecC---c---cccccceEEEEEecc--------------------------------
Confidence 00 00000 0 000000111111110
Q ss_pred chhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHHHHhCCceEEEEECCCCHHHHHHH
Q 005980 452 LKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQ---PMLDAIHQLFLKKKVHCIRIDGGTPPASRQAL 528 (666)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~---~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~ 528 (666)
.+...+.+++.. .+.+.|||++.. ..++.|...|.+.|+++..+||+++ +..
T Consensus 313 ------------------~~~~~L~~ll~~---l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~ 367 (1171)
T TIGR01054 313 ------------------DLKETLLEIVKK---LGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KED 367 (1171)
T ss_pred ------------------cHHHHHHHHHHH---cCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHH
Confidence 112334555544 357899999988 8999999999999999999999986 368
Q ss_pred HHHhcCCCCceEEEEe---ccccccccCccc-CCEEEEecCCC
Q 005980 529 VTEFQEKDDVKAAVLS---MKAGGVGLTLTA-ASTVIFAELSW 567 (666)
Q Consensus 529 i~~F~~~~~~~v~L~s---t~a~~~GlnL~~-a~~VI~~d~~w 567 (666)
+++|++|. +.+++.+ |++++.|||++. .++|||+++|-
T Consensus 368 l~~Fr~G~-~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 368 YEKFAEGE-IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHcCC-CCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999998 3444443 689999999998 79999999885
No 99
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=2.6e-17 Score=157.45 Aligned_cols=156 Identities=24% Similarity=0.328 Sum_probs=103.3
Q ss_pred hcCchHHHHHHHHHHH------cCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 172 SKLLPFQRDGVRFALQ------HGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~------~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
.+|+|||.+++..+++ .++++++..+||+|||+++++++..+.. +++++||+ +++.||.+++..+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--~~l~~~p~~~l~~Q~~~~~~~~~~~--- 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--KVLIVAPNISLLEQWYDEFDDFGSE--- 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--EEEEEESSHHHHHHHHHHHHHHSTT---
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--ceeEecCHHHHHHHHHHHHHHhhhh---
Confidence 3699999999998874 2578899999999999999988887765 99999999 8999999999777531
Q ss_pred cEEEEEecCCCCCcc------ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-------------HhcCCccEEEEcC
Q 005980 245 EIVVVLSQLGGSNRS------GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-------------LMSSNFKIVIADE 305 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-------------l~~~~~~~vIiDE 305 (666)
............... ...... ..........+.+++++.+...... .....+++||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISD--KSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEH--HHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhccccccccccccccccccccccc--ccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 111111111000000 000000 0011123455889999999865432 2334789999999
Q ss_pred ccccCChhHHHHHHhhhhhhhcceEEEeeccCC
Q 005980 306 SHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338 (666)
Q Consensus 306 aH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~ 338 (666)
||++.+... ++.+... .+.++++|||||.
T Consensus 155 aH~~~~~~~--~~~i~~~--~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDSS--YREIIEF--KAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHHH--HHHHHHS--SCCEEEEEESS-S
T ss_pred hhhcCCHHH--HHHHHcC--CCCeEEEEEeCcc
Confidence 999976552 3444433 7899999999994
No 100
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=3.6e-16 Score=154.17 Aligned_cols=302 Identities=17% Similarity=0.260 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHcCCC-eeeecCCCCcHHHHHHHHHH-hcCC--CCc-EEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 177 FQRDGVRFALQHGGR-ILLADEMGLGKTIQAIAVAT-CFRD--VWP-VLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~-~iLad~~GlGKTi~ala~~~-~~~~--~~~-~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
-|..++--++....+ .|--...|+|||......+. .... ..| .+-++|+ .+..|-.+-+.+-..+. .+...+
T Consensus 116 IQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~--~ita~y 193 (477)
T KOG0332|consen 116 IQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT--ELTASY 193 (477)
T ss_pred HHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce--eeeEEE
Confidence 477777777765443 34446789999976433332 2211 122 5666999 67777666666543222 222222
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc---CCccEEEEcCccccCChh--HHHHHHhhhhhh
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMS---SNFKIVIADESHFLKNAQ--AKRTAATLPIIK 325 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~---~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~ 325 (666)
.-.++ ..++.......|+|-|+..+......+.. ....++++|||.++-+.. .-.+..++..+.
T Consensus 194 air~s-----------k~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP 262 (477)
T KOG0332|consen 194 AIRGS-----------KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP 262 (477)
T ss_pred EecCc-----------ccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC
Confidence 11111 12223334566889999888876655432 356799999999886533 112222333333
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ 405 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~ 405 (666)
+....++.|||-. .....|..+..... ..++++| +.+ .
T Consensus 263 ~~~QllLFSATf~-------------------e~V~~Fa~kivpn~-------------------n~i~Lk~---eel-~ 300 (477)
T KOG0332|consen 263 RNQQLLLFSATFV-------------------EKVAAFALKIVPNA-------------------NVIILKR---EEL-A 300 (477)
T ss_pred CcceEEeeechhH-------------------HHHHHHHHHhcCCC-------------------ceeeeeh---hhc-c
Confidence 6788899999962 11222322221110 0122221 111 2
Q ss_pred CCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHc
Q 005980 406 LPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA 485 (666)
Q Consensus 406 lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~ 485 (666)
|++.....+.|.. ...|+++|.++-.- + .
T Consensus 301 L~~IkQlyv~C~~-------------------------------------------------~~~K~~~l~~lyg~-~-t 329 (477)
T KOG0332|consen 301 LDNIKQLYVLCAC-------------------------------------------------RDDKYQALVNLYGL-L-T 329 (477)
T ss_pred ccchhhheeeccc-------------------------------------------------hhhHHHHHHHHHhh-h-h
Confidence 2222222222221 12366677763322 2 3
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecC
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL 565 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~ 565 (666)
-...||||+...++..|+..|...|..+..++|.+...+|..++++|+.|. .-+|++|.++..|||.+..+.||+||+
T Consensus 330 igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~--~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 330 IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK--EKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc--ceEEEEechhhcccccceEEEEEecCC
Confidence 457799999999999999999999999999999999999999999999998 567999999999999999999999999
Q ss_pred CC------CcchhhhhhhhhhccCCCC
Q 005980 566 SW------TPGDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 566 ~w------np~~~~Qa~gR~~R~Gq~~ 586 (666)
|- .+..|.+|+||.+|.|.+.
T Consensus 408 P~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 408 PVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred ccccCCCCCHHHHHHHhcccccccccc
Confidence 84 6778999999999999654
No 101
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=1.8e-17 Score=149.13 Aligned_cols=121 Identities=26% Similarity=0.483 Sum_probs=111.9
Q ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc
Q 005980 469 EAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548 (666)
Q Consensus 469 ~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~ 548 (666)
+.|...+.+++......+.++|||+.+...++.+.+.|...+..+..++|+++..+|..+++.|+++. ..+|+++.++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChh
Confidence 36889999999887667899999999999999999999998999999999999999999999999988 6788899999
Q ss_pred ccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEE
Q 005980 549 GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 549 ~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
++|+|++.+++||+++++|++..+.|++||++|.|+...+.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999997776653
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.8e-15 Score=169.23 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=114.8
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+.++...|..+||||.++...+.|...|.+.|+++..++|.....+|+.+.+.|+.|. ++++|..
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccC
Confidence 457999999999999899999999999999999999999999999999999999999999999999985 7899999
Q ss_pred cccccCcc--------------------------------------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 548 GGVGLTLT--------------------------------------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 548 ~~~GlnL~--------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+|.|+|+. +.=+||-.+.+-|.....|..||++|.|..-...
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99999975 2347899999999999999999999999876654
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 005980 590 VYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 590 v~~lv~~~tiee~i~~~~ 607 (666)
+| + |+|+.++.+.
T Consensus 582 f~-l----SleD~l~~~f 594 (896)
T PRK13104 582 FY-L----SLEDNLMRIF 594 (896)
T ss_pred EE-E----EcCcHHHHHh
Confidence 44 2 3566666544
No 103
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.71 E-value=3.3e-16 Score=173.87 Aligned_cols=305 Identities=19% Similarity=0.265 Sum_probs=209.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHH-HHhcC-------CCCc-EEEEeCC-cchHHHHHHHHHHhcC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAV-ATCFR-------DVWP-VLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~-~~~~~-------~~~~-~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
..++|-|..|+-.++. |..+|-...+|+|||+.-+.. +.+.. ..+| .||+||+ .+..|-.+++.+|+..
T Consensus 386 ~k~~~IQ~qAiP~Ims-GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS-GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCCcchhhhhcchhcc-CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 3788999999988887 778888889999999976432 23221 1466 5899999 7888877777777643
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-----HHhcCCccEEEEcCccccCC--hhH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-----ILMSSNFKIVIADESHFLKN--AQA 314 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-----~l~~~~~~~vIiDEaH~~kn--~~s 314 (666)
..+.++-. +++..... ..........++|+|...+..... ..+-.+...|++|||.++.. ...
T Consensus 465 --l~ir~v~v-ygg~~~~~-------qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfeP 534 (997)
T KOG0334|consen 465 --LGIRVVCV-YGGSGISQ-------QIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEP 534 (997)
T ss_pred --cCceEEEe-cCCccHHH-------HHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCc
Confidence 22222222 33333211 111222234578888877654432 12223566999999999853 222
Q ss_pred HHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhh
Q 005980 315 KRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVM 394 (666)
Q Consensus 315 ~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 394 (666)
+.+. +..-+..-+..++.|||- +.+
T Consensus 535 q~~~-Ii~nlrpdrQtvlfSatf------------------------------------------------------pr~ 559 (997)
T KOG0334|consen 535 QITR-ILQNLRPDRQTVLFSATF------------------------------------------------------PRS 559 (997)
T ss_pred ccch-HHhhcchhhhhhhhhhhh------------------------------------------------------hHH
Confidence 3333 222222344556666663 111
Q ss_pred hhehhhhhhhcCCcc------------cEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHh
Q 005980 395 IRRLKKDVLAQLPVK------------RRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINK 462 (666)
Q Consensus 395 lrr~k~~v~~~lp~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (666)
+..+...|+. +|.- ..+.+.+-.
T Consensus 560 m~~la~~vl~-~Pveiiv~~~svV~k~V~q~v~V~~-------------------------------------------- 594 (997)
T KOG0334|consen 560 MEALARKVLK-KPVEIIVGGRSVVCKEVTQVVRVCA-------------------------------------------- 594 (997)
T ss_pred HHHHHHHhhc-CCeeEEEccceeEeccceEEEEEec--------------------------------------------
Confidence 2223333333 3321 111111111
Q ss_pred hhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEE
Q 005980 463 IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAV 542 (666)
Q Consensus 463 ~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 542 (666)
....|+..|.++|....+ ..++|||++....++.+.+.|.+.|+.+..+||..+..+|...+++|+++. ..+|
T Consensus 595 ----~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~--~~LL 667 (997)
T KOG0334|consen 595 ----IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV--VNLL 667 (997)
T ss_pred ----CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC--ceEE
Confidence 123577788888887754 779999999999999999999999999999999999999999999999998 7789
Q ss_pred EeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 543 LSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 543 ~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
++|++++.||++.....||+||.+-...+|+.|.||.+|-|.+. ..|.|+.+
T Consensus 668 vaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 668 VATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred EehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999999999999999999999999999999776 55556665
No 104
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=7.2e-16 Score=161.22 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=199.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCC--------CCcEEEEeCC-cchHHHHHHHHHHh--c
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRD--------VWPVLILTPS-SLRLHWAAMIQQWL--N 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~--------~~~~LIv~P~-sl~~qW~~e~~~~~--~ 240 (666)
.+.|-|+.++-.++. +..++-+.++|+|||+.-+.-+ ..++. .-..+|+.|+ .|+.|-..|+.++. .
T Consensus 158 ~Pt~iq~~aipvfl~-~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE-KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcccchhhhhhhc-ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 567889999988887 4578899999999998754422 22221 2468999999 88999999999885 2
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH----HhcCCccEEEEcCccccCChhHHH
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI----LMSSNFKIVIADESHFLKNAQAKR 316 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~~s~~ 316 (666)
..+..+...........+ ..........+.|.|+..+...... +.-.....+|+|||..+..+. ..
T Consensus 237 ~t~~~a~~~~~~~~~~qk---------~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-~f 306 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQK---------PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-FF 306 (593)
T ss_pred CCchhhhhcccccchhhc---------cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh-hH
Confidence 111111110000000000 0000111233556666665544332 122245689999999998871 11
Q ss_pred HHHhhhhhh----hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhh
Q 005980 317 TAATLPIIK----KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKAT 392 (666)
Q Consensus 317 ~~~~~~l~~----~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 392 (666)
...+..++. ...++=++|||- ....+++-.++.
T Consensus 307 ~~Qla~I~sac~s~~i~~a~FSat~-----------------------------------------~~~VEE~~~~i~-- 343 (593)
T KOG0344|consen 307 VEQLADIYSACQSPDIRVALFSATI-----------------------------------------SVYVEEWAELIK-- 343 (593)
T ss_pred HHHHHHHHHHhcCcchhhhhhhccc-----------------------------------------cHHHHHHHHHhh--
Confidence 111111111 222333444442 011122222211
Q ss_pred hhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccH
Q 005980 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKI 472 (666)
Q Consensus 393 ~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl 472 (666)
.+ ...+.+...+...... . -...+..+...|+
T Consensus 344 -------~~---------~~~vivg~~~sa~~~V----------~----------------------QelvF~gse~~K~ 375 (593)
T KOG0344|consen 344 -------SD---------LKRVIVGLRNSANETV----------D----------------------QELVFCGSEKGKL 375 (593)
T ss_pred -------cc---------ceeEEEecchhHhhhh----------h----------------------hhheeeecchhHH
Confidence 00 1112222222210000 0 0112334556788
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHH-HhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccc
Q 005980 473 PAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLF-LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 473 ~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~G 551 (666)
-++.+++... -...+|||.++.+.+..|...| .-.++++..|||..++.+|.+.+++|+.|. .-+|++|+..+.|
T Consensus 376 lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~--IwvLicTdll~RG 451 (593)
T KOG0344|consen 376 LALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK--IWVLICTDLLARG 451 (593)
T ss_pred HHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC--eeEEEehhhhhcc
Confidence 8888888874 5678999999999999999999 667999999999999999999999999999 8889999999999
Q ss_pred cCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 552 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
+|+.+++.||+||.|-+-..|+.|+||.+|.|+....
T Consensus 452 iDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 452 IDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred ccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 9999999999999999999999999999999987654
No 105
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.69 E-value=4.3e-16 Score=156.63 Aligned_cols=314 Identities=14% Similarity=0.173 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhc--------CCCC-cEEEEeCC-cchHHHHHHHHHHhcCCCCc
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCF--------RDVW-PVLILTPS-SLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~--------~~~~-~~LIv~P~-sl~~qW~~e~~~~~~~~~~~ 245 (666)
-|..++-.+++ |..++.-.-||+|||..-+- ++..+ .+.+ ..+|+||+ .|..|-...+.+....-+..
T Consensus 45 IQs~aIplaLE-gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~ 123 (569)
T KOG0346|consen 45 IQSSAIPLALE-GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKD 123 (569)
T ss_pred hhhcccchhhc-CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHh
Confidence 48888888888 55777778899999987442 22211 1122 37999999 78888777776643211111
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhHH-HHHHhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQAK-RTAATL 321 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~ 321 (666)
+.++-- .+..+... ...-......|+|+|+..+..+... .......++|+|||.-+.+.+.. -.+.+.
T Consensus 124 lr~~nl-~s~~sdsv-------~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~ 195 (569)
T KOG0346|consen 124 LRAINL-ASSMSDSV-------NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLR 195 (569)
T ss_pred hhhhhh-hcccchHH-------HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHH
Confidence 111100 00000000 0011123456889999998876542 12234679999999998776543 344455
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHH-hhhhhhhhehhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL-MKATVMIRRLKK 400 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~lrr~k~ 400 (666)
..+++.-..+++|||- ..+...|..+ ++.++++.-+..
T Consensus 196 ~~LPr~~Q~~LmSATl-----------------------------------------~dDv~~LKkL~l~nPviLkl~e~ 234 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATL-----------------------------------------SDDVQALKKLFLHNPVILKLTEG 234 (569)
T ss_pred HhCCchhhheeehhhh-----------------------------------------hhHHHHHHHHhccCCeEEEeccc
Confidence 5555566679999996 1223444444 334555433333
Q ss_pred hhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 401 DVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 401 ~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
+. . ++......++..++++ |.-.+.-++.
T Consensus 235 el-~--~~dqL~Qy~v~cse~D------------------------------------------------KflllyallK 263 (569)
T KOG0346|consen 235 EL-P--NPDQLTQYQVKCSEED------------------------------------------------KFLLLYALLK 263 (569)
T ss_pred cC-C--CcccceEEEEEeccch------------------------------------------------hHHHHHHHHH
Confidence 22 1 2222222233333222 2212222222
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc--------------
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK-------------- 546 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-------------- 546 (666)
-- --..|.|||.+..+....|.-+|+.-|++.++++|..|...|.-++++||.|- .-+|++|+
T Consensus 264 L~-LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~--YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 264 LR-LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL--YDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HH-HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc--eeEEEEccCccchhhhhccccc
Confidence 11 12468999999999999999999999999999999999999999999999987 66777776
Q ss_pred ---------------------ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 547 ---------------------AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 547 ---------------------a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
..+.|||++..++|+++|.|-++..|++|+||..|-|.+..+ .-||.+
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P 409 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSP 409 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecc
Confidence 125899999999999999999999999999999998766554 344444
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=8.7e-15 Score=163.76 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=112.0
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++.+.+.+....|.++||||..+...+.|...|...|+++..++|. ..+|+..+..|..++ ..++++|+.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~--g~VtIATNm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP--GAVTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC--ceEEEeccc
Confidence 3469999999999888899999999999999999999999999999999996 569999999999888 668999999
Q ss_pred cccccCccc--------------------------------------CCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 548 GGVGLTLTA--------------------------------------ASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 548 ~~~GlnL~~--------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+|.|+|+.- .=+||..+.+-|.....|..||++|.|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 999999753 347899999999999999999999999886654
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 005980 590 VYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 590 v~~lv~~~tiee~i~~~~ 607 (666)
.| + |.|+.++...
T Consensus 568 f~-l----SleD~l~~~f 580 (830)
T PRK12904 568 FY-L----SLEDDLMRIF 580 (830)
T ss_pred EE-E----EcCcHHHHhh
Confidence 43 2 3455555443
No 107
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.67 E-value=3.2e-16 Score=161.53 Aligned_cols=359 Identities=15% Similarity=0.177 Sum_probs=210.1
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHH-HHHHHhc---------------CCCCc-EEEEeCC-cchHHHHHHH
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQA-IAVATCF---------------RDVWP-VLILTPS-SLRLHWAAMI 235 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~~~---------------~~~~~-~LIv~P~-sl~~qW~~e~ 235 (666)
+.|-|...+-.+++....+|=|.+||+|||+.. |-++..+ +...| .|||+|+ .|..|-...|
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 444565555566653356788899999999863 3333311 11222 7999999 7888888888
Q ss_pred HHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH----HhcC-CccEEEEcCccccC
Q 005980 236 QQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI----LMSS-NFKIVIADESHFLK 310 (666)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~----l~~~-~~~~vIiDEaH~~k 310 (666)
...+..+...+..+.++..-.+..+. ....+.|+|.|+..|...... +.++ +..++|+||+.++-
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRl----------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRL----------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMV 353 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHH----------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHh
Confidence 77765443333333332222221111 112456899999998765432 2221 45799999999985
Q ss_pred Chh-HHHHHHhhhhhh-----hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHH
Q 005980 311 NAQ-AKRTAATLPIIK-----KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384 (666)
Q Consensus 311 n~~-s~~~~~~~~l~~-----~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 384 (666)
-.+ ......+...+. .-+..+..|||--..-...+.... ............
T Consensus 354 ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~-----------------------k~~~k~~~~~~k 410 (731)
T KOG0347|consen 354 EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSR-----------------------KKKDKEDELNAK 410 (731)
T ss_pred hhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhh-----------------------hccchhhhhhHH
Confidence 432 111112222211 224559999996211100000000 000000011122
Q ss_pred HHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhh
Q 005980 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIY 464 (666)
Q Consensus 385 l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (666)
+..+|. .+.-.-++ ..+++++.+... ..+ ....-.|..
T Consensus 411 iq~Lmk----------~ig~~~kp-----kiiD~t~q~~ta-~~l-------~Es~I~C~~------------------- 448 (731)
T KOG0347|consen 411 IQHLMK----------KIGFRGKP-----KIIDLTPQSATA-STL-------TESLIECPP------------------- 448 (731)
T ss_pred HHHHHH----------HhCccCCC-----eeEecCcchhHH-HHH-------HHHhhcCCc-------------------
Confidence 333332 11111111 244455443110 000 000001100
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
..|--.|.=+|. .-..+.||||+.++-...|.-+|...++....+|.+|.+++|.+-+++|.+.+ ..+|++
T Consensus 449 ----~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLia 519 (731)
T KOG0347|consen 449 ----LEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIA 519 (731)
T ss_pred ----cccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEe
Confidence 000000000111 12568999999999999999999999999999999999999999999999988 568999
Q ss_pred ccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC---------------------CHHHHH
Q 005980 545 MKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND---------------------TVDDIV 603 (666)
Q Consensus 545 t~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~---------------------tiee~i 603 (666)
|++++.|||++...|||+|..|-+...|++|-||..|.+.. .|.|. |+.++ .+++.+
T Consensus 520 TDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~ 597 (731)
T KOG0347|consen 520 TDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDI 597 (731)
T ss_pred ehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHH
Confidence 99999999999999999999999999999999999997742 22221 11111 257888
Q ss_pred HHHHHHHHHHHhhhh
Q 005980 604 WDVVRSKLENLGQVL 618 (666)
Q Consensus 604 ~~~~~~K~~~~~~~l 618 (666)
+..+.++..++..+-
T Consensus 598 m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 598 MDALKERVRLAREID 612 (731)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776653
No 108
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1e-15 Score=152.48 Aligned_cols=311 Identities=17% Similarity=0.221 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecC
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~ 253 (666)
|+.||-=.++ |..++.--+.|.|||.+-...+...-+ ..-+||++|+.-+.+...+..+-++ ...++.+.....
T Consensus 53 QqraI~p~i~-G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg-~~~~~~v~~~ig 130 (397)
T KOG0327|consen 53 QQRAILPCIK-GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALG-DHMDVSVHACIG 130 (397)
T ss_pred Hhcccccccc-CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhh-cccceeeeeecC
Confidence 8888776666 667777788999999984444333211 3348999999655443334333332 122222221111
Q ss_pred CCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHH-HHHHhhhhhhhcceE
Q 005980 254 GGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAK-RTAATLPIIKKAQYA 330 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~~~~~~~ 330 (666)
+...... ..........+++.|+..+....+ .+......+.++||+..+...+.+ ...++...+...-+.
T Consensus 131 g~~~~~~-------~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv 203 (397)
T KOG0327|consen 131 GTNVRRE-------DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQV 203 (397)
T ss_pred cccchhh-------hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhh
Confidence 1111100 001111234577888766654432 344456789999999988765543 455566666677788
Q ss_pred EEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCccc
Q 005980 331 LLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKR 410 (666)
Q Consensus 331 llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~ 410 (666)
+++|||-- .|+.- --...+..++.+-+-|.+ |..+-
T Consensus 204 ~l~SAT~p----~~vl~------------------------------------vt~~f~~~pv~i~vkk~~----ltl~g 239 (397)
T KOG0327|consen 204 VLLSATMP----SDVLE------------------------------------VTKKFMREPVRILVKKDE----LTLEG 239 (397)
T ss_pred eeecccCc----HHHHH------------------------------------HHHHhccCceEEEecchh----hhhhh
Confidence 99999951 11100 000111112211111111 11111
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEE
Q 005980 411 RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFL 490 (666)
Q Consensus 411 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~Kvl 490 (666)
....++.. ...+|+..+.++.. +-...+
T Consensus 240 ikq~~i~v------------------------------------------------~k~~k~~~l~dl~~----~~~q~~ 267 (397)
T KOG0327|consen 240 IKQFYINV------------------------------------------------EKEEKLDTLCDLYR----RVTQAV 267 (397)
T ss_pred eeeeeeec------------------------------------------------cccccccHHHHHHH----hhhcce
Confidence 11111111 11237777777766 456789
Q ss_pred EEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcc
Q 005980 491 IFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPG 570 (666)
Q Consensus 491 VF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~ 570 (666)
||++...-++.|...|...|+.+..++|.+...+|..+.+.|+.|+ ..+|++++..+.|++++.++.||+|++|-+..
T Consensus 268 if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs--srvlIttdl~argidv~~~slvinydlP~~~~ 345 (397)
T KOG0327|consen 268 IFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS--SRVLITTDLLARGIDVQQVSLVVNYDLPARKE 345 (397)
T ss_pred EEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC--ceEEeeccccccccchhhcceeeeeccccchh
Confidence 9999999999999999999999999999999999999999999998 55789999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 571 DLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 571 ~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
.|..|+||++|.|.+- ....++++.
T Consensus 346 ~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 346 NYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred hhhhhcccccccCCCc--eeeeeehHh
Confidence 9999999999999653 334556554
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=3.2e-15 Score=166.54 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+......|..+||||.++...+.|...|.+.|+++..++|.....++.-+...++.+. ++++|..
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnm 497 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEecc
Confidence 346999999999888889999999999999999999999999999999999988777776666666554 7889999
Q ss_pred cccccCcc---cCC-----EEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 548 GGVGLTLT---AAS-----TVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 548 ~~~GlnL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
+|.|+|+. ... +||.++.|-|...+.|++||++|.|..-..
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 99999994 677 999999999999999999999999987664
No 110
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.65 E-value=2.5e-14 Score=167.55 Aligned_cols=306 Identities=17% Similarity=0.218 Sum_probs=179.3
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCC--CcEEEEeCCcc-hHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDV--WPVLILTPSSL-RLHWAAMIQQWLNIPPSEIVVVLSQLGG 255 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~--~~~LIv~P~sl-~~qW~~e~~~~~~~~~~~i~~~~~~~~~ 255 (666)
++.+...++.+.-+||+.+||+|||.+.=.++...... +.+++.-|.-+ .......+.+-++.+....+.+....
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~-- 149 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF-- 149 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC--
Confidence 35555666666678999999999999875555443322 23444446644 44455566666654433222111100
Q ss_pred CCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCcc-ccCChhHHH--HHHhhhhhhhcceEE
Q 005980 256 SNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESH-FLKNAQAKR--TAATLPIIKKAQYAL 331 (666)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH-~~kn~~s~~--~~~~~~l~~~~~~~l 331 (666)
.........+.++|...+...... -.-.++++||+||+| +..+..... .+.+.... ...+.+
T Consensus 150 -------------~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlI 215 (1283)
T TIGR01967 150 -------------HDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKII 215 (1283)
T ss_pred -------------CcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEE
Confidence 011112334778888888765432 112478999999999 455544322 22222211 234689
Q ss_pred EeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccE
Q 005980 332 LLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRR 411 (666)
Q Consensus 332 lLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~ 411 (666)
++|||.- .. .|...|.....+. ..+ ...|..
T Consensus 216 lmSATld---~~------------------~fa~~F~~apvI~-V~G-------------------------r~~PVe-- 246 (1283)
T TIGR01967 216 ITSATID---PE------------------RFSRHFNNAPIIE-VSG-------------------------RTYPVE-- 246 (1283)
T ss_pred EEeCCcC---HH------------------HHHHHhcCCCEEE-ECC-------------------------Ccccce--
Confidence 9999972 11 1111111100000 000 001111
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHH-HcCCEEE
Q 005980 412 QQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVI-EAGCKFL 490 (666)
Q Consensus 412 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~-~~g~Kvl 490 (666)
..+.++....... ...+...+.+.+..+. +....+|
T Consensus 247 -v~Y~~~~~~~~~~------------------------------------------~~~~~~~i~~~I~~l~~~~~GdIL 283 (1283)
T TIGR01967 247 -VRYRPLVEEQEDD------------------------------------------DLDQLEAILDAVDELFAEGPGDIL 283 (1283)
T ss_pred -eEEecccccccch------------------------------------------hhhHHHHHHHHHHHHHhhCCCCEE
Confidence 1121111100000 0012223334443332 2457899
Q ss_pred EEeccHHHHHHHHHHHHhCC---ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCC
Q 005980 491 IFAHHQPMLDAIHQLFLKKK---VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSW 567 (666)
Q Consensus 491 VF~~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~w 567 (666)
||.......+.+.+.|.+.+ +.+..++|+++.++|+++++.+ .. +.+|++|.++++|||+++..+||.++..-
T Consensus 284 VFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 284 IFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 99999999999999998764 4588899999999999885543 32 56889999999999999999999877321
Q ss_pred ------------------CcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 568 ------------------TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 568 ------------------np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
+...+.||.||++|.| +-.+|+|+++...
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 3468899999999998 4456888886544
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=6.5e-15 Score=164.35 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=114.8
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..++++.+.++.+.|.++||||.+....+.+...|...|+++..+++..+..+|..+.+.|+.|. ++++|.
T Consensus 430 t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATn 505 (908)
T PRK13107 430 TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATN 505 (908)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999886 789999
Q ss_pred ccccccCcc-------------------------------------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 547 AGGVGLTLT-------------------------------------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 547 a~~~GlnL~-------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
.+|.|+|+. +.=+||-.+.+-|.....|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999975 2348899999999999999999999999876544
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 005980 590 VYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 590 v~~lv~~~tiee~i~~~~ 607 (666)
.| + |+|+.++.+.
T Consensus 586 f~-l----SlED~L~r~f 598 (908)
T PRK13107 586 FY-L----SMEDSLMRIF 598 (908)
T ss_pred EE-E----EeCcHHHHHh
Confidence 33 2 3566665543
No 112
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.64 E-value=2.8e-14 Score=166.51 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCce---EEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVH---CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
...++|||+.....++.+.+.|.+.+++ +..++|+++.++|..+++.+ + .+.+|++|+++++|||+++.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g--~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S--GRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C--CeeEEEeccHHhhccccCcceEEE
Confidence 4578999999999999999999988764 66789999999999887653 2 267899999999999999999999
Q ss_pred Eec---------------CCCCc---chhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 562 FAE---------------LSWTP---GDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 562 ~~d---------------~~wnp---~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
.++ ++-.+ ..+.||.||++|.+ +-.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 974 33333 67999999999984 4456788876543
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.61 E-value=4.1e-15 Score=169.38 Aligned_cols=317 Identities=15% Similarity=0.134 Sum_probs=202.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
...||-|.++|..++. |..+++-.+||.||++.----+. ...+-+|||.|. ||+......+.+ .+++.. .
T Consensus 263 ~~FR~~Q~eaI~~~l~-Gkd~fvlmpTG~GKSLCYQlPA~--l~~gitvVISPL~SLm~DQv~~L~~-~~I~a~-----~ 333 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS-GKDCFVLMPTGGGKSLCYQLPAL--LLGGVTVVISPLISLMQDQVTHLSK-KGIPAC-----F 333 (941)
T ss_pred ccCChhHHHHHHHHHc-CCceEEEeecCCceeeEeecccc--ccCCceEEeccHHHHHHHHHHhhhh-cCccee-----e
Confidence 3689999999995554 77888888999999975321111 224578999998 777655554422 222221 1
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH---HHhc-C---CccEEEEcCccccCChhHH---HHHHh
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN---ILMS-S---NFKIVIADESHFLKNAQAK---RTAAT 320 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~---~l~~-~---~~~~vIiDEaH~~kn~~s~---~~~~~ 320 (666)
-+.+........++....... ....+..+|++.+..... .+.. . -..++|+||||....++-. -|+.+
T Consensus 334 L~s~q~~~~~~~i~q~l~~~~--~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 334 LSSIQTAAERLAILQKLANGN--PIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred ccccccHHHHHHHHHHHhCCC--CeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 111111111111111111110 122356678888764322 1211 1 2679999999998764321 22222
Q ss_pred hhhhhh--cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 321 LPIIKK--AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 321 ~~l~~~--~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
..+..+ ....++||||--..--.|+...|++-+|.++..
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--------------------------------------- 452 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS--------------------------------------- 452 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc---------------------------------------
Confidence 222112 245699999975555555555555444442221
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
+..++.....|....+. .....+.+.
T Consensus 453 -----sfnR~NL~yeV~~k~~~-------------------------------------------------~~~~~~~~~ 478 (941)
T KOG0351|consen 453 -----SFNRPNLKYEVSPKTDK-------------------------------------------------DALLDILEE 478 (941)
T ss_pred -----cCCCCCceEEEEeccCc-------------------------------------------------cchHHHHHH
Confidence 01111111222211110 011112222
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
+... ..+...||||....+.+.+...|...|++...+|++++..+|+.+-++|..+. ..++++|-|.|.|||-++..
T Consensus 479 ~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~--~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 479 SKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK--IRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred hhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC--CeEEEEEeeccCCCCCCcee
Confidence 2222 46788999999999999999999999999999999999999999999999998 67788889999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEe
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~ 595 (666)
.||+|..|-+..-|.|-.|||+|-|+...+..|+=..
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999999999999999999998876665444
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.61 E-value=6.3e-16 Score=125.47 Aligned_cols=78 Identities=31% Similarity=0.533 Sum_probs=74.1
Q ss_pred HHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccC
Q 005980 504 QLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 504 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
+.|+..|+++..++|.++..+|+.+++.|+.+. ..+|++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~--~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGE--IRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTS--SSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccC--ceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999998 478888999999999999999999999999999999999999987
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.60 E-value=2.6e-12 Score=144.21 Aligned_cols=132 Identities=13% Similarity=0.174 Sum_probs=112.5
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.++..+++.|......|.++||||.....++.|.+.|...|+++..+||.++..+|.++++.|+.|. ..+|++++.++
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~VLV~t~~L~ 503 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE--FDVLVGINLLR 503 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC--ceEEEEcChhc
Confidence 5778888888888889999999999999999999999999999999999999999999999999987 67889999999
Q ss_pred cccCcccCCEEEEec-----CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCC--HHHHHHHH
Q 005980 550 VGLTLTAASTVIFAE-----LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT--VDDIVWDV 606 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t--iee~i~~~ 606 (666)
+|++++.++.||++| .+-+...++|++||++|.. .. .++.++...| +...|.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999 5668889999999999974 22 2444444433 44444443
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.58 E-value=1.3e-13 Score=157.93 Aligned_cols=136 Identities=17% Similarity=0.249 Sum_probs=105.1
Q ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcC--CCCceEEEEeccccccccC
Q 005980 476 LDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQE--KDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 476 ~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~--~~~~~v~L~st~a~~~Gln 553 (666)
...+..-...|.|++|.++.+..+..++..|+..+.++..+|+.....+|.+.++.... ..+-..++++|.+...|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 33344444679999999999999999999999998889999999999999998886542 1112568999999999999
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 005980 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIG--QVSSVNVYYLLANDTVDDIVWDVVRSKLENL 614 (666)
Q Consensus 554 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G--q~~~V~v~~lv~~~tiee~i~~~~~~K~~~~ 614 (666)
+. .+ +++.|+. ....++||.||++|.| ....+.+|...-.+..+.+.++....+....
T Consensus 510 id-fd-~mITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 510 ID-FD-VLITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred cc-cC-eeeecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 98 44 4445544 5678999999999999 5566888887777777777666665555433
No 117
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=2.9e-14 Score=137.67 Aligned_cols=157 Identities=25% Similarity=0.308 Sum_probs=108.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CC--CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RD--VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~--~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
..++|+|.+++..++.....+++..++|+|||.+++.++... .. ..++||++|+ .+..||..++.+++........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 468999999999998742678999999999999776665544 33 3789999997 7899999999998743221111
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCC-cEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCC-hhHHHHHHhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDG-LFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKN-AQAKRTAATLPI 323 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn-~~s~~~~~~~~l 323 (666)
....... ...... ...... .++++||+.+...... ....+++++|+||||++.+ ........+...
T Consensus 87 ~~~~~~~--~~~~~~--------~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 87 GLYGGDS--KREQLR--------KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred EEeCCcc--hHHHHH--------HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 1111110 000000 011122 6889999999877665 3445788999999999986 444455555554
Q ss_pred hhhcceEEEeeccCC
Q 005980 324 IKKAQYALLLSGTPA 338 (666)
Q Consensus 324 ~~~~~~~llLTgTP~ 338 (666)
+....+++++||||.
T Consensus 157 ~~~~~~~v~~saT~~ 171 (201)
T smart00487 157 LPKNVQLLLLSATPP 171 (201)
T ss_pred CCccceEEEEecCCc
Confidence 446789999999996
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.1e-11 Score=128.40 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=119.9
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.-++-|++.+......+.+++|-+-.+.|++.|.++|...|+++.++|.....-+|.+++++.+.|. ..+|+.+.-+-
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGINLLR 507 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGINLLR 507 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEeehhhh
Confidence 3567778888887889999999999999999999999999999999999999999999999999998 78899999999
Q ss_pred cccCcccCCEEEEecCC-----CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 550 VGLTLTAASTVIFAELS-----WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~-----wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
||||+|.++.|.++|.. -+...++|-+|||.|-- ...|..|--...++.+..|-+...++
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHH
Confidence 99999999999999976 48889999999999943 33566776666777787777665443
No 119
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.55 E-value=1.4e-13 Score=138.17 Aligned_cols=323 Identities=15% Similarity=0.170 Sum_probs=196.0
Q ss_pred hHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 176 PFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
|-|..|+.-++++...+.++.+||+||++.--.-+.. ..+-++||.|. .|+....+.+.+. ..+....... ..
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~--~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSK---lS 96 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV--HGGITIVISPLIALIKDQIDHLKRL-KVPCESLNSK---LS 96 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--hCCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcch---hh
Confidence 5699999999998889999999999999854322221 23567888887 5665556655543 2222111100 01
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHH-----HHHHHHh-cCCccEEEEcCccccCCh------hHHHHHHhhh
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL-----KLQNILM-SSNFKIVIADESHFLKNA------QAKRTAATLP 322 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~-----~~~~~l~-~~~~~~vIiDEaH~~kn~------~s~~~~~~~~ 322 (666)
.. ++..++....... ..-.+..+|++... ...+.|. ......+++||||.+.-+ ..-+.-+++.
T Consensus 97 t~--ER~ri~~DL~~ek--p~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 97 TV--ERSRIMGDLAKEK--PTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred HH--HHHHHHHHHHhcC--CceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 11 1111111111100 11224456666543 2233332 234679999999988543 3333334443
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCC-CCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDV-YKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.+ .....++||||--..--+|+|.+|.+-.|-- |.. ..|.. .
T Consensus 173 ~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~------------------N----------------- 215 (641)
T KOG0352|consen 173 VC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRD------------------N----------------- 215 (641)
T ss_pred hC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhh------------------h-----------------
Confidence 32 2234589999987677788888887666521 111 00000 0
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHH-HHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRE-LEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
++.+ ..|...+.+ +..+.... .. .-+|-+...+.=.
T Consensus 216 ------------LFYD------~~~K~~I~D~~~~LaDF~--------------------~~-----~LG~~~~~~~~~K 252 (641)
T KOG0352|consen 216 ------------LFYD------NHMKSFITDCLTVLADFS--------------------SS-----NLGKHEKASQNKK 252 (641)
T ss_pred ------------hhHH------HHHHHHhhhHhHhHHHHH--------------------HH-----hcCChhhhhcCCC
Confidence 0000 000000000 00000000 00 0000000000000
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEE
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~V 560 (666)
. -.| =-||||..++..+.+.-.|...|++...+|.+....+|.++-+.+.+++ .-+++.|-+.|.|+|=++..-|
T Consensus 253 ~--~~G-CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~--~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 253 T--FTG-CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE--IPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred C--cCc-ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC--CCEEEEEeccccccCCcceeEE
Confidence 0 012 2489999999999999999999999999999999999999999999988 5678888999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhccCCCCcEEEEEE
Q 005980 561 IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYL 593 (666)
Q Consensus 561 I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l 593 (666)
|+.+++-|.+-|.|--||++|-|..+-+..||-
T Consensus 328 iHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 328 IHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred EecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 999999999999999999999998887877763
No 120
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=1.9e-12 Score=143.30 Aligned_cols=309 Identities=21% Similarity=0.219 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC----------CCCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR----------DVWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~----------~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
-|-++..-++.-+.++|++.+||+|||..|+..+. .++ +..+++-|+|. +|.....+.+.+.+. +.
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~--~~ 191 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA--PL 191 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc--cc
Confidence 45566666677788999999999999998865443 333 46689999998 676555555554442 22
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH---HH-H--HHHhcCCccEEEEcCccccCChhHH---
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL---KL-Q--NILMSSNFKIVIADESHFLKNAQAK--- 315 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~---~~-~--~~l~~~~~~~vIiDEaH~~kn~~s~--- 315 (666)
.+.+.- ..|.... .+.+ ..+.+++|||++... +. . ..|. ....+||+||.|.+...-..
T Consensus 192 gi~v~E--LTGD~ql--------~~te-i~~tqiiVTTPEKwDvvTRk~~~d~~l~-~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 192 GISVRE--LTGDTQL--------TKTE-IADTQIIVTTPEKWDVVTRKSVGDSALF-SLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred cceEEE--ecCcchh--------hHHH-HHhcCEEEecccceeeeeeeeccchhhh-hheeeEEeeeehhhcCcccchHH
Confidence 222222 2222211 0111 234567788876552 11 1 1222 25789999999999764222
Q ss_pred ----HHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhh
Q 005980 316 ----RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKA 391 (666)
Q Consensus 316 ----~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 391 (666)
|+..........-+.++||||- -+..|+. .||.-.+....-.|..+|
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~y------------------------ 310 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRY------------------------ 310 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeecccc------------------------
Confidence 2222222233567889999995 2444443 333333332222232222
Q ss_pred hhhhhehhhhhhhcCCcccEEEEE-ecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccc
Q 005980 392 TVMIRRLKKDVLAQLPVKRRQQVF-LDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEA 470 (666)
Q Consensus 392 ~~~lrr~k~~v~~~lp~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (666)
.|....+.+. +... ..... .+. -...
T Consensus 311 --------------RPvpL~~~~iG~k~~-~~~~~-~~~-------------------------------------~d~~ 337 (1230)
T KOG0952|consen 311 --------------RPVPLTQGFIGIKGK-KNRQQ-KKN-------------------------------------IDEV 337 (1230)
T ss_pred --------------cccceeeeEEeeecc-cchhh-hhh-------------------------------------HHHH
Confidence 1111111111 1100 00000 000 0011
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----CCc-------------------eEEEEECCCCHHHHHH
Q 005980 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----KKV-------------------HCIRIDGGTPPASRQA 527 (666)
Q Consensus 471 Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----~g~-------------------~~~~i~G~~~~~~R~~ 527 (666)
+...+ .+.+.+|+.|+||++.+...-...+.|.+ .|. ....=|.++...+|+-
T Consensus 338 ~~~kv----~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 338 CYDKV----VEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHH----HHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 22233 33445799999999987665555544433 122 1233455677888999
Q ss_pred HHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcch----------hhhhhhhhhccCCCCc
Q 005980 528 LVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD----------LIQAEDRAHRIGQVSS 587 (666)
Q Consensus 528 ~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~----------~~Qa~gR~~R~Gq~~~ 587 (666)
+-+.|+.|. .-+|+||....-|+||++-..+|--...|++.. ..|-.|||+|..=.+.
T Consensus 414 ~E~~F~~G~--i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 414 VEKEFKEGH--IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred HHHHHhcCC--ceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 999999988 778999999999999998777775555555543 6899999999875444
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=5.3e-12 Score=141.91 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.|..++++.+......|.++||||.++...+.|...|...|+++..+++ ...+|+..+..|..++ ..++++|..+|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~--g~VtIATNMAG 657 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK--GAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC--CeEEEeccCcC
Confidence 5999999999988889999999999999999999999999999999998 5679999999999887 56899999999
Q ss_pred cccCcccCC--------EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 550 VGLTLTAAS--------TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 550 ~GlnL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
.|+|+.-.. +||.++.+-+...+.|++||++|.|..-.... ++ |.|+.++....
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fv---SleD~Lmr~f~ 719 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YV---SLEDELMRLFG 719 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--Ee---chhHHHHHhhC
Confidence 999998332 44889999999999999999999998765422 22 35666665543
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.50 E-value=5.6e-11 Score=134.51 Aligned_cols=122 Identities=13% Similarity=0.185 Sum_probs=107.7
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.++..+++.|......|.++||||.....++.|...|...|+++..+||.++..+|..+++.|+.|. ..++++++.++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~vlV~t~~L~ 507 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGINLLR 507 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--ceEEEEeCHHh
Confidence 5678888888888889999999999999999999999999999999999999999999999999887 67788999999
Q ss_pred cccCcccCCEEEEecC-----CCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 550 VGLTLTAASTVIFAEL-----SWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
+|++++.++.||++|. +-++..++|++||++|- .. -.++.++..
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~--G~~i~~~~~ 556 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VN--GKVILYADK 556 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CC--CEEEEEecC
Confidence 9999999999999996 46889999999999994 22 234555553
No 123
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=1.5e-13 Score=124.69 Aligned_cols=136 Identities=23% Similarity=0.211 Sum_probs=90.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEec
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSS 266 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 266 (666)
++++.+++|+|||.+++.++..+. ...+++|+||+ .+..+|.+.+..+... ...+.+.... .......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~----- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGG--TSIKQQE----- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecC--cchhHHH-----
Confidence 578999999999999999888765 45789999999 5677778888887742 2222222211 1111000
Q ss_pred CCCCCCCCCCcEEEEeHHHHHHHHHHH--hcCCccEEEEcCccccCChhHHHHH-HhhhhhhhcceEEEeeccC
Q 005980 267 NTKRNIPLDGLFNIISYDVVLKLQNIL--MSSNFKIVIADESHFLKNAQAKRTA-ATLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 267 ~~~~~~~~~~~v~I~sy~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~s~~~~-~~~~l~~~~~~~llLTgTP 337 (666)
........++++||+.+....... ....+++||+||+|.+.+....... ..........+++++||||
T Consensus 74 ---~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 ---KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 011235568899999887665432 2347999999999999886654431 1111122678899999998
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=7.1e-14 Score=114.34 Aligned_cols=81 Identities=25% Similarity=0.497 Sum_probs=76.0
Q ss_pred HHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhh
Q 005980 501 AIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAH 580 (666)
Q Consensus 501 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 580 (666)
.+...|...++.+..++|+++..+|..+++.|+++. ..+|++|.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK--IKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC--CeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999999987 578899999999999999999999999999999999999999
Q ss_pred ccC
Q 005980 581 RIG 583 (666)
Q Consensus 581 R~G 583 (666)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=9.4e-12 Score=136.19 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=124.0
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+....+.|..|||.+.++...+.|...|.+.|+++..++......+ .+++.+- |.. -.+-++|..
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~A--G~~-gaVTIATNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAEA--GKY-GAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHhc--CCC-CcEEEEecC
Confidence 457999999999999899999999999999999999999999999999998755333 4445443 322 346778899
Q ss_pred cccccCcc---------------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 005980 548 GGVGLTLT---------------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612 (666)
Q Consensus 548 ~~~GlnL~---------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~ 612 (666)
+|.|-|+. +.=+||-.+.+-|.....|..||++|.|..-...+|- |+|+.++.+......
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~~~~~ 559 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANLAGEK 559 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcCchhh
Confidence 99998875 2348899999999999999999999999886654432 356666655543211
Q ss_pred HHhhhhcCCccccccccccccCChhhHhhHHHHHHhccCCCchhhhhhhhh
Q 005980 613 NLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKY 663 (666)
Q Consensus 613 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 663 (666)
... +.+. ...-....-.+.++...+.++...-+.+..-+++
T Consensus 560 -~~~---~~~~------~~~i~~~~~~~~i~~aQk~vE~~~~~~Rk~~~~y 600 (764)
T PRK12326 560 -LPA---QPDE------DGRITSPKAADLVDHAQRVAEGQLLEIHANTWRY 600 (764)
T ss_pred -hhc---CCCC------CCcCcChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 1111 1112222334557777777776665555555444
No 126
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.44 E-value=7.4e-13 Score=128.88 Aligned_cols=155 Identities=22% Similarity=0.260 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhcCC-----CCcEEEEeCC-cchHHHHHHHHHHhcCCCCc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCFRD-----VWPVLILTPS-SLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~ 245 (666)
.++++|.+++..+.+ +.++++..+||+|||++++ .++..+.. ..+++|++|+ .++.|+...+..+.......
T Consensus 21 ~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~ 99 (203)
T cd00268 21 KPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLK 99 (203)
T ss_pred CCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCce
Confidence 589999999999887 7789999999999998854 33333322 3469999999 78999999999987533222
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh-HHHHHHhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ-AKRTAATLP 322 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~-s~~~~~~~~ 322 (666)
+....+ +....... .....+..++|+|++.+...... +.-.+++++|+||+|.+.+.. ......+..
T Consensus 100 ~~~~~~--~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 100 VVVIYG--GTSIDKQI--------RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred EEEEEC--CCCHHHHH--------HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHH
Confidence 222211 11111000 01112456889999887654331 112357899999999987544 233344444
Q ss_pred hhhhcceEEEeeccCC
Q 005980 323 IIKKAQYALLLSGTPA 338 (666)
Q Consensus 323 l~~~~~~~llLTgTP~ 338 (666)
.+....+.+++||||-
T Consensus 170 ~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 170 LLPKDRQTLLFSATMP 185 (203)
T ss_pred hCCcccEEEEEeccCC
Confidence 4445788999999994
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.43 E-value=4.5e-13 Score=126.23 Aligned_cols=152 Identities=21% Similarity=0.329 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCC--CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 176 PFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRD--VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~--~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
|+|.+++..+.+ +..+++..+||+|||..++..+. .+.+ ...++|++|+ +++.|-.+++.+++......+....
T Consensus 2 ~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~- 79 (169)
T PF00270_consen 2 PLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH- 79 (169)
T ss_dssp HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES-
T ss_pred HHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccc-
Confidence 799999999884 67899999999999999875443 3333 3489999999 7899999999999865333333332
Q ss_pred cCCCCCcc-ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCCh-hHHHHHHhhhhhhh-
Q 005980 252 QLGGSNRS-GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNA-QAKRTAATLPIIKK- 326 (666)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~-~s~~~~~~~~l~~~- 326 (666)
++.... .. ......+..++|+|++.+...... ..-.+.++||+||+|.+... .......+...+..
T Consensus 80 --~~~~~~~~~-------~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 80 --GGQSISEDQ-------REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp --TTSCHHHHH-------HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred --ccccccccc-------cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 111100 00 000113456899999999877664 12234899999999999763 22334444443322
Q ss_pred -cceEEEeeccCC
Q 005980 327 -AQYALLLSGTPA 338 (666)
Q Consensus 327 -~~~~llLTgTP~ 338 (666)
..+.+++||||-
T Consensus 151 ~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 151 KNIQIILLSATLP 163 (169)
T ss_dssp TTSEEEEEESSST
T ss_pred CCCcEEEEeeCCC
Confidence 367899999995
No 128
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.43 E-value=4.9e-12 Score=125.04 Aligned_cols=317 Identities=17% Similarity=0.140 Sum_probs=201.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
+.||.|+++++..+. +..++|..++|-||++.--.-+.+ ..+-.|||||. +|+....-.++.. |+...-.
T Consensus 94 kfrplq~~ain~~ma-~ed~~lil~tgggkslcyqlpal~--adg~alvi~plislmedqil~lkql-gi~as~l----- 164 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA-GEDAFLILPTGGGKSLCYQLPALC--ADGFALVICPLISLMEDQILQLKQL-GIDASML----- 164 (695)
T ss_pred hcChhHHHHhhhhhc-cCceEEEEeCCCccchhhhhhHHh--cCCceEeechhHHHHHHHHHHHHHh-Ccchhhc-----
Confidence 578999999998887 567788888999999864433333 35889999998 7876655555543 4332211
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH-------HHHhcCCccEEEEcCccccCChh------HHHHH
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ-------NILMSSNFKIVIADESHFLKNAQ------AKRTA 318 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~-------~~l~~~~~~~vIiDEaH~~kn~~------s~~~~ 318 (666)
....++.+...+-... .+.......+.+|++.+.+.. ..+....|.++-+||.|...-++ .+...
T Consensus 165 nansske~~k~v~~~i--~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 165 NANSSKEEAKRVEAAI--TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred cCcccHHHHHHHHHHH--cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 0111111110000000 011122335567888775432 23444578999999999885432 22222
Q ss_pred HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
.+.+-. +....++||||.-.+-+.|.-.+|..-. .+.+|-
T Consensus 243 ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--------------------------------------~~tf~a- 282 (695)
T KOG0353|consen 243 ILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--------------------------------------AFTFRA- 282 (695)
T ss_pred HHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--------------------------------------hheeec-
Confidence 222211 4566799999987666555544442110 000000
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
.-.-|...+.++.-+-++++ =++.+..+
T Consensus 283 ----~fnr~nl~yev~qkp~n~dd------------------------------------------------~~edi~k~ 310 (695)
T KOG0353|consen 283 ----GFNRPNLKYEVRQKPGNEDD------------------------------------------------CIEDIAKL 310 (695)
T ss_pred ----ccCCCCceeEeeeCCCChHH------------------------------------------------HHHHHHHH
Confidence 00112222222222222221 01112222
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
+..- -.|..-||||-+....+.+...|+..|+....+|..+.+.+|..+-+.+-.++ .-+++.|-+.|.||+-++..
T Consensus 311 i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e--iqvivatvafgmgidkpdvr 387 (695)
T KOG0353|consen 311 IKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE--IQVIVATVAFGMGIDKPDVR 387 (695)
T ss_pred hccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc--eEEEEEEeeecccCCCCCee
Confidence 2221 25778899999999999999999999999999999999999999888888887 66777888999999999999
Q ss_pred EEEEecCCCCcchhhh-------------------------------------------hhhhhhccCCCCcEEEEEEEe
Q 005980 559 TVIFAELSWTPGDLIQ-------------------------------------------AEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Q-------------------------------------------a~gR~~R~Gq~~~V~v~~lv~ 595 (666)
.||+-++|.+...|.| --||++|-|++-++..||=.+
T Consensus 388 fvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 388 FVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred EEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 9999999999999999 468889999988877766543
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=6.2e-11 Score=133.13 Aligned_cols=117 Identities=12% Similarity=0.163 Sum_probs=95.5
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.|..++++.+.+....|..|||-|.++...+.|...|.+.|+++..++......+- +++..- |.. -.+-++|..+|
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia~A--G~~-g~VTIATNmAG 627 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIAGA--GKL-GAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHHhc--CCC-CcEEEeecccc
Confidence 68999999999998999999999999999999999999999999999987553332 344332 322 34677889999
Q ss_pred cccCcc--------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 550 VGLTLT--------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 550 ~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
.|-|+. +.=+||..+.+-|.....|..||++|.|..-....
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 998874 33488999999999999999999999998765443
No 130
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=2e-12 Score=129.88 Aligned_cols=311 Identities=19% Similarity=0.237 Sum_probs=196.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCC----CCcEEEEeCC-cchHHHHH---HHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRD----VWPVLILTPS-SLRLHWAA---MIQQWLNIPP 243 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~----~~~~LIv~P~-sl~~qW~~---e~~~~~~~~~ 243 (666)
.+.|-|+..+.-+++ +..++-..-||+|||..-+.-+.+ ++. .-+.||+.|+ .|..|-.+ ++.+++++..
T Consensus 43 ~ptpiqRKTipliLe-~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE-GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCchhcccccceee-ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 456789988888887 444444455999999875543332 222 3489999999 67666444 4444443221
Q ss_pred CcEEEEEecCCCCCc-cceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh--HHHHH
Q 005980 244 SEIVVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ--AKRTA 318 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~ 318 (666)
. .. .++... +.+.. ...+++++|.|+..+.-.... +......+||+||+.++-..+ .+..+
T Consensus 122 s---~~---~ggD~~eeqf~~--------l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e 187 (529)
T KOG0337|consen 122 S---LL---VGGDSIEEQFIL--------LNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHE 187 (529)
T ss_pred h---hh---cccchHHHHHHH--------hccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHH
Confidence 1 11 122111 11111 112345777787766432211 223356789999999986543 23333
Q ss_pred HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhheh
Q 005980 319 ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRL 398 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~ 398 (666)
.+.+ +..+...+++|||-- .+| .+|...+ +.++..+| +
T Consensus 188 ~l~r-l~~~~QTllfSatlp----~~l---v~fakaG---------------------------------l~~p~lVR-l 225 (529)
T KOG0337|consen 188 ILSR-LPESRQTLLFSATLP----RDL---VDFAKAG---------------------------------LVPPVLVR-L 225 (529)
T ss_pred HHHh-CCCcceEEEEeccCc----hhh---HHHHHcc---------------------------------CCCCceEE-e
Confidence 3333 346678999999951 111 1111000 11111111 0
Q ss_pred hhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHH
Q 005980 399 KKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDY 478 (666)
Q Consensus 399 k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~ 478 (666)
|| .-.+++.. -...+......|..+|+.+
T Consensus 226 --dv------------etkise~l-------------------------------------k~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 226 --DV------------ETKISELL-------------------------------------KVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred --eh------------hhhcchhh-------------------------------------hhheeeeccHHHHHHHHHH
Confidence 00 00001000 0001112233466677777
Q ss_pred HHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 479 LETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 479 l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
+.... ..+..+||+....+++++...|...|+.+..|.|++....|..-+.+|..+. .-+|+.|+++..|++++-.+
T Consensus 255 l~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k--~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 255 LGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRK--TSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred Hhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCc--cceEEEehhhhccCCCcccc
Confidence 76643 2567999999999999999999999999999999999999999999999887 66899999999999999999
Q ss_pred EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeC
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
.||+||.|-.+..+..|.||+.|-|.+- ..|-+|+.
T Consensus 332 nvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~ 367 (529)
T KOG0337|consen 332 NVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAS 367 (529)
T ss_pred ccccccCCCCCceEEEEecchhhccccc--eEEEEEec
Confidence 9999999999999999999999988543 34555554
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1e-10 Score=131.34 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=102.8
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..++++.+..+.+.|..|||-+.++...+.|...|.+.|+++-.++..... +-.+++.+ .|.. -.+-++|.
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~-~EA~IIa~--AG~~-GaVTIATN 505 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHE-KEAEIIAQ--AGRP-GALTIATN 505 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccch-hHHHHHHc--CCCC-CcEEEecc
Confidence 34579999999999999999999999999999999999999999999888887542 22344442 3332 34677889
Q ss_pred ccccccCcc-------------------------------------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 547 AGGVGLTLT-------------------------------------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 547 a~~~GlnL~-------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
.+|.|-|+. +.=+||-.+.+-|.....|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998874 3348899999999999999999999999886644
Q ss_pred EEEEEeCCCHHHHHHHHH
Q 005980 590 VYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 590 v~~lv~~~tiee~i~~~~ 607 (666)
.|- |.|+.++.+.
T Consensus 586 f~l-----SlED~Lmr~f 598 (913)
T PRK13103 586 FYL-----SLEDSLMRIF 598 (913)
T ss_pred EEE-----EcCcHHHHhh
Confidence 432 2355555443
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=4.9e-10 Score=124.59 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
..+|..++++.+......|..|||.|.++...+.|...|.+.|+++.+++......+ ..++. +.|.. -.+-++|..
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E-A~IIa--~AG~~-GaVTIATNM 483 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE-AEIIA--KAGQK-GAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH-HHHHH--hCCCC-CeEEEeccc
Confidence 457999999999998899999999999999999999999999999999998754222 23443 34432 456778899
Q ss_pred cccccCcccCC--------EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 548 GGVGLTLTAAS--------TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 548 ~~~GlnL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
+|.|-|+.-.. +||..+.+-|.....|..||++|.|..-....| + |+|+.++.+..
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r~f~ 547 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFRRFS 547 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHHHhC
Confidence 99999986433 899999999999999999999999987664443 2 35555555443
No 133
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.29 E-value=1.3e-10 Score=127.68 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=96.9
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
...|-+||++||..+. +|.++++|..|.+|||++|=.++ .+.+...+++--.|- .|-.|=-++|+.-++- +..
T Consensus 295 pFelD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgL 369 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGL 369 (1248)
T ss_pred CCCccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc----cce
Confidence 3578899999996555 48899999999999999985433 344556788888897 5556666777776641 111
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH----HHHhcCCccEEEEcCccccCChhHH-HHHHhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ----NILMSSNFKIVIADESHFLKNAQAK-RTAATLPI 323 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~----~~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l 323 (666)
+. .+..+..+..+.|+|-+.++... +.+. +...||+||.|++.+-.-. .+..+.-.
T Consensus 370 lT-----------------GDvqinPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 370 LT-----------------GDVQINPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred ee-----------------cceeeCCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeee
Confidence 11 11222345568899999887653 2232 4678999999999764322 33444444
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
+++.-..++||||-
T Consensus 431 lP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 431 LPRHVNFILLSATV 444 (1248)
T ss_pred ccccceEEEEeccC
Confidence 44666779999995
No 134
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.24 E-value=4.3e-10 Score=124.35 Aligned_cols=319 Identities=16% Similarity=0.165 Sum_probs=173.7
Q ss_pred cCchHHHHHHH--HHHHcCCCeeeecCCCCcHHHHHHHHHH--hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVR--FALQHGGRILLADEMGLGKTIQAIAVAT--CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~--~~~~~~~~~iLad~~GlGKTi~ala~~~--~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
+++.||.+.+. .++ .++++|.+.+|+.|||++|--++. .+-..+.+|.+.|- +.+..=..++..+.- +.. +.
T Consensus 223 ~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~-~~G-~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSI-DLG-FP 299 (1008)
T ss_pred HHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcc-ccC-Cc
Confidence 67888888775 334 477899999999999998754443 23345678889998 444434444444431 111 11
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcC----CccEEEEcCccccCChhH--H----HH
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSS----NFKIVIADESHFLKNAQA--K----RT 317 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~----~~~~vIiDEaH~~kn~~s--~----~~ 317 (666)
+-.+++.. .+........+.|+|-+......+.+... ..++|++||-|.+...+- - .+
T Consensus 300 -ve~y~g~~-----------~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 300 -VEEYAGRF-----------PPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred -chhhcccC-----------CCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 11111111 11122233457799998887776655432 468999999999965331 1 11
Q ss_pred HHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 318 AATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 318 ~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+.+..-....-+.+++|||--++. +|-..+ .+.++.+|
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L----------------------------------------~A~~y~t~ 405 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPNNS--LLQDWL----------------------------------------DAFVYTTR 405 (1008)
T ss_pred HHHHhccccceeEeeeecccCChH--HHHHHh----------------------------------------hhhheecc
Confidence 222211112245799999974332 222222 11122221
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
.+.--+.+.+. .-..++ +.+ .. ...+++..+.. ....+ ..+ +.++.
T Consensus 406 fRPv~L~E~ik-~G~~i~-~~~--r~----~~lr~ia~l~~-----------------------~~~g~-~dp--D~~v~ 451 (1008)
T KOG0950|consen 406 FRPVPLKEYIK-PGSLIY-ESS--RN----KVLREIANLYS-----------------------SNLGD-EDP--DHLVG 451 (1008)
T ss_pred cCcccchhccC-CCcccc-cch--hh----HHHHHhhhhhh-----------------------hhccc-CCC--cceee
Confidence 11111111110 000000 000 00 00111110000 00000 011 34566
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHH--------------------------Hh------------CCceEEEEECC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLF--------------------------LK------------KKVHCIRIDGG 519 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L--------------------------~~------------~g~~~~~i~G~ 519 (666)
++.+...+|.++||||+.+.-.+.+...+ .. ....+.+.|.+
T Consensus 452 L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaG 531 (1008)
T KOG0950|consen 452 LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAG 531 (1008)
T ss_pred ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccc
Confidence 66666667888899988765544322211 11 01235667778
Q ss_pred CCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec----CCCCcchhhhhhhhhhccCC
Q 005980 520 TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE----LSWTPGDLIQAEDRAHRIGQ 584 (666)
Q Consensus 520 ~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d----~~wnp~~~~Qa~gR~~R~Gq 584 (666)
.+.++|..+-..|+++. ..++++|....-|+||++-.++|-+- ..-+...|.|.+||++|.|-
T Consensus 532 LT~eER~~iE~afr~g~--i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFREGN--IFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cccchHHHHHHHHHhcC--eEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 88899999888999998 55666777789999999877776432 33467789999999999984
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.23 E-value=4.2e-10 Score=126.63 Aligned_cols=345 Identities=17% Similarity=0.195 Sum_probs=182.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC-----------CCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR-----------DVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~-----------~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
+|.+-|-.....++....+++++.+||+|||-.|+.-+.. +. ...++.-|+|. +|+..|...|.+++
T Consensus 309 sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 3555666655666666778999999999999998765542 21 13468889998 89999999999997
Q ss_pred cCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH---HH-HHHHhcCCccEEEEcCccccCC-hhH
Q 005980 240 NIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL---KL-QNILMSSNFKIVIADESHFLKN-AQA 314 (666)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~---~~-~~~l~~~~~~~vIiDEaH~~kn-~~s 314 (666)
. +..|.|.-.. +....+ ........+.++|++-.. +. .+.--..-++++|+||.|.+.. .++
T Consensus 389 a--~~GI~V~ElT--gD~~l~---------~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGp 455 (1674)
T KOG0951|consen 389 A--PLGITVLELT--GDSQLG---------KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGP 455 (1674)
T ss_pred c--ccCcEEEEec--ccccch---------hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccch
Confidence 3 4444444322 211100 111123346677765442 11 0000112367999999999932 222
Q ss_pred HH----HHHhhh--hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHH-
Q 005980 315 KR----TAATLP--IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN- 387 (666)
Q Consensus 315 ~~----~~~~~~--l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~- 387 (666)
.. .+.... --....+.++||||- -+..|.-+.|..-.+++| .|...|-.-....++-|......+.+
T Consensus 456 vLESIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf----~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 456 VLESIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF----YFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred HHHHHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCccccc----ccCcccCcCCccceEeccccCCchHHH
Confidence 21 111111 011246779999996 455666655544444544 23333322211112222222222222
Q ss_pred -HhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcC
Q 005980 388 -LMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTD 466 (666)
Q Consensus 388 -ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (666)
.|+. -.-+.|+..... ....|++.--.+..+....+..... +.+.+.....
T Consensus 530 qamNe-----~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~l---------------------e~dtls~fmr- 581 (1674)
T KOG0951|consen 530 QAMNE-----ACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKAL---------------------EEDTLSRFMR- 581 (1674)
T ss_pred HHHHH-----HHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHh---------------------hhhHHHHHHh-
Confidence 2221 112334433333 4455666544443332222221110 0000111110
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
.+++ -.++++...+.- | . ..|.+.| .+.+..-|.+++..+|...-+-|.++. .-+++||.
T Consensus 582 e~s~----s~eilrtea~~~-k------n----~dLkdLL---pygfaIHhAGl~R~dR~~~EdLf~~g~--iqvlvsta 641 (1674)
T KOG0951|consen 582 EDSA----SREILRTEAGQA-K------N----PDLKDLL---PYGFAIHHAGLNRKDRELVEDLFADGH--IQVLVSTA 641 (1674)
T ss_pred cccc----hhhhhhhhhhcc-c------C----hhHHHHh---hccceeeccCCCcchHHHHHHHHhcCc--eeEEEeeh
Confidence 0000 011111100000 0 0 0111111 224567788899999999999999998 77899999
Q ss_pred ccccccCcccCCEEE----EecCC---C---CcchhhhhhhhhhccCC
Q 005980 547 AGGVGLTLTAASTVI----FAELS---W---TPGDLIQAEDRAHRIGQ 584 (666)
Q Consensus 547 a~~~GlnL~~a~~VI----~~d~~---w---np~~~~Qa~gR~~R~Gq 584 (666)
..+-|+||++-.++| .|||. | +|....|+.||++|.+-
T Consensus 642 tlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 642 TLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred hhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCcc
Confidence 999999999755554 26654 3 67788999999999763
No 136
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.22 E-value=8e-10 Score=126.00 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=99.4
Q ss_pred hhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 170 IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
+...|-|||++++.- +.+|.+++++.+||+|||++|-.+++ .+++..++.-..|. .|..|=.+++...++--...+.
T Consensus 116 ~~F~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 456899999999955 55588999999999999999875544 45667779999998 7888877777766541111111
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~ 324 (666)
+.. ....+..+..+.++|-+.++...-. ....+...||+||+|++....-. .+....-++
T Consensus 195 L~T-----------------GDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 195 LMT-----------------GDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred cee-----------------cceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 111 1112223445677777877755311 11235678999999999875433 233344444
Q ss_pred hhcceEEEeeccC
Q 005980 325 KKAQYALLLSGTP 337 (666)
Q Consensus 325 ~~~~~~llLTgTP 337 (666)
.+.-+.++||||-
T Consensus 258 P~~v~~v~LSATv 270 (1041)
T COG4581 258 PDHVRFVFLSATV 270 (1041)
T ss_pred CCCCcEEEEeCCC
Confidence 4566889999995
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.2e-09 Score=121.95 Aligned_cols=322 Identities=21% Similarity=0.242 Sum_probs=188.6
Q ss_pred hcCchHHHHHHHHHHHc---CCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcE
Q 005980 172 SKLLPFQRDGVRFALQH---GGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~---~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i 246 (666)
..|-+-|..++..+... ....+|...||+|||-.-+-++.. +...+.+||++|. ++..|-...|+..++. .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~---~v 273 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGA---KV 273 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCC---Ch
Confidence 47889999999998765 346799999999999888766664 4566789999999 9999999999998863 33
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCcccc--CChhH----HHHHHh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFL--KNAQA----KRTAAT 320 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~--kn~~s----~~~~~~ 320 (666)
.+..+..+... ++..|.... .....|+|-|-..+..=. .+.++||+||=|.- |..+. .|--++
T Consensus 274 ~vlHS~Ls~~e--r~~~W~~~~----~G~~~vVIGtRSAlF~Pf-----~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 274 AVLHSGLSPGE--RYRVWRRAR----RGEARVVIGTRSALFLPF-----KNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hhhcccCChHH--HHHHHHHHh----cCCceEEEEechhhcCch-----hhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 33333222222 222221111 123447777655543221 25789999999964 33221 122223
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
.+--...-..++-||||.. +-+ .....+.+.+-++..
T Consensus 343 ~Ra~~~~~pvvLgSATPSL---ES~----------------------------------------~~~~~g~y~~~~L~~ 379 (730)
T COG1198 343 LRAKKENAPVVLGSATPSL---ESY----------------------------------------ANAESGKYKLLRLTN 379 (730)
T ss_pred HHHHHhCCCEEEecCCCCH---HHH----------------------------------------HhhhcCceEEEEccc
Confidence 2221234556888999931 111 111111111111111
Q ss_pred hhh-hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 401 DVL-AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 401 ~v~-~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
... ..+|.. ..+++..+.... +..=-..+++.|
T Consensus 380 R~~~a~~p~v----~iiDmr~e~~~~------------------------------------------~~~lS~~Ll~~i 413 (730)
T COG1198 380 RAGRARLPRV----EIIDMRKEPLET------------------------------------------GRSLSPALLEAI 413 (730)
T ss_pred cccccCCCcc----eEEecccccccc------------------------------------------CccCCHHHHHHH
Confidence 111 122222 122222111000 000001222233
Q ss_pred HHHHHcCCEEEEEeccH------------------------------------------------------------HHH
Q 005980 480 ETVIEAGCKFLIFAHHQ------------------------------------------------------------PML 499 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~------------------------------------------------------------~~~ 499 (666)
.+.++.|+.+|+|-+.+ .-.
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 33333333333332111 133
Q ss_pred HHHHHHHHhC--CceEEEEECCCCHHH--HHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC--CC-----
Q 005980 500 DAIHQLFLKK--KVHCIRIDGGTPPAS--RQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS--WT----- 568 (666)
Q Consensus 500 ~~l~~~L~~~--g~~~~~i~G~~~~~~--R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~--wn----- 568 (666)
+.+++.|... +.+++++++.+.... -..+++.|.+|+ ..||+.|.....|.|+++...|.+++.+ -+
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge--~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE--ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC--CCeeecchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 5677777775 778999999987533 467899999998 6789999999999999999888776544 22
Q ss_pred -----cchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 569 -----PGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 569 -----p~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
...+.|..||++|-+....|.|-.+..+..
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 234579999999987777777776666544
No 138
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=99.21 E-value=1.6e-09 Score=116.69 Aligned_cols=92 Identities=28% Similarity=0.462 Sum_probs=77.0
Q ss_pred HHHhcCCCCceEEEEeccccccccCcccCCEE--------EEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 529 VTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV--------IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 529 i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~V--------I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
.++|..|+. .|.++| .|++-||.||.-..| |-+++||+...-+|..||.||-.|.+--....|+++=--|
T Consensus 850 KqrFM~GeK-~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDGEK-LVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhccccc-eeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 567888884 445554 788999999876555 5699999999999999999999999877777788877678
Q ss_pred HHHHHHHHHHHHHHhhhhcCCc
Q 005980 601 DIVWDVVRSKLENLGQVLDGHE 622 (666)
Q Consensus 601 e~i~~~~~~K~~~~~~~l~~~~ 622 (666)
.+...++.++++.++++-.|+.
T Consensus 928 rRFAS~VAKRLESLGALThGDR 949 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHGDR 949 (1300)
T ss_pred hHHHHHHHHHHHhhcccccccc
Confidence 8899999999999999988865
No 139
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.21 E-value=1.6e-10 Score=123.85 Aligned_cols=143 Identities=19% Similarity=0.306 Sum_probs=99.1
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
..+|-|||..+|. .+.++.++++..-|.+|||++|- |+|..+++..+++.-.|- +|-.|=.+|+..-++ ++..
T Consensus 127 PF~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred CcccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 3578999999995 55668899999999999999984 667788888999999997 666777777766553 2212
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH----HHHhcCCccEEEEcCccccCChhHH-HHHHhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ----NILMSSNFKIVIADESHFLKNAQAK-RTAATLPI 323 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~----~~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l 323 (666)
..+ .-.+..+....|+|-+.++... ..+ ....-||+||.|+++...-. .+....-+
T Consensus 202 MTG-----------------DVTInP~ASCLVMTTEILRsMLYRGSEvm--rEVaWVIFDEIHYMRDkERGVVWEETIIl 262 (1041)
T KOG0948|consen 202 MTG-----------------DVTINPDASCLVMTTEILRSMLYRGSEVM--REVAWVIFDEIHYMRDKERGVVWEETIIL 262 (1041)
T ss_pred eec-----------------ceeeCCCCceeeeHHHHHHHHHhccchHh--heeeeEEeeeehhccccccceeeeeeEEe
Confidence 111 1112234457788988887543 222 24677999999999885432 22223334
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
+++.-+-+.||||-
T Consensus 263 lP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATI 276 (1041)
T ss_pred ccccceEEEEeccC
Confidence 45777889999994
No 140
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.20 E-value=3.2e-09 Score=120.29 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=83.4
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCc-eEEEEeccccccccCcccCCE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDV-KAAVLSMKAGGVGLTLTAAST 559 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~-~v~L~st~a~~~GlnL~~a~~ 559 (666)
...-+|||-.-....+...+.|.+ ..+.+.-++|..+.++..++ |+..+.- +-+|++|.++.++|++++..+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEE
Confidence 456899999999999988888887 34778889999998887774 5544332 558999999999999999999
Q ss_pred EEE--------ecCC----------CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 560 VIF--------AELS----------WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 560 VI~--------~d~~----------wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
||= |++. -+-+.-.||.||++|.+ +=..|+|++++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHHHH
Confidence 972 3322 24455668888888865 45679999876554
No 141
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.20 E-value=3.7e-09 Score=124.04 Aligned_cols=89 Identities=16% Similarity=0.292 Sum_probs=64.5
Q ss_pred HHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc
Q 005980 474 AVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548 (666)
Q Consensus 474 ~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~ 548 (666)
.+.+.|.++.. .+.++|||+.+...++.+...|.. .++. .+..+.. ..|.+++++|+.++ ..+|++++++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~--~~iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGE--KAILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCC--CeEEEEccee
Confidence 34444444433 456899999999999999999875 2443 3333322 47999999999877 4567788999
Q ss_pred ccccCccc--CCEEEEecCCC
Q 005980 549 GVGLTLTA--ASTVIFAELSW 567 (666)
Q Consensus 549 ~~GlnL~~--a~~VI~~d~~w 567 (666)
.||+|+++ +..||+.-+|+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred ecccccCCCceEEEEEeCCCC
Confidence 99999986 45778877665
No 142
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.10 E-value=4.8e-09 Score=104.16 Aligned_cols=235 Identities=19% Similarity=0.208 Sum_probs=139.3
Q ss_pred CCChhh--hhcCchHHHHHHHHHHHc---------CCCeeeecCCCCcHHHHHHHHHHh--cCCCCcEEEEeCC-cchHH
Q 005980 165 QIPAHI--ESKLLPFQRDGVRFALQH---------GGRILLADEMGLGKTIQAIAVATC--FRDVWPVLILTPS-SLRLH 230 (666)
Q Consensus 165 ~~p~~~--~~~L~p~Q~~~v~~~~~~---------~~~~iLad~~GlGKTi~ala~~~~--~~~~~~~LIv~P~-sl~~q 230 (666)
.+|..+ ...|-.-|.|+|-++.++ +.|.+|+|.+|.||-.++.+++.. ++...+.+.|..+ .|...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 567643 457999999999998743 557899999999999998888774 3444556666665 78777
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-------HHh------cCC
Q 005980 231 WAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-------ILM------SSN 297 (666)
Q Consensus 231 W~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-------~l~------~~~ 297 (666)
-.+++..-. ...+.+.... ..+ .......+..|+.+||..+..... .+. ..+
T Consensus 107 a~RDl~DIG---~~~i~v~~l~--~~~----------~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~d 171 (303)
T PF13872_consen 107 AERDLRDIG---ADNIPVHPLN--KFK----------YGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGED 171 (303)
T ss_pred HHHHHHHhC---CCcccceech--hhc----------cCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcC
Confidence 666666542 2222111100 000 001122355688999999875421 111 123
Q ss_pred c-cEEEEcCccccCChhH------HHHHHhhhhhhh--cceEEEeeccCCCCChHHHHHH--HHHhCC-CCCCCHHHHhh
Q 005980 298 F-KIVIADESHFLKNAQA------KRTAATLPIIKK--AQYALLLSGTPALSRPIELFKQ--LEALYP-DVYKNVHEYGN 365 (666)
Q Consensus 298 ~-~~vIiDEaH~~kn~~s------~~~~~~~~l~~~--~~~~llLTgTP~~n~~~el~~~--l~~l~p-~~~~~~~~f~~ 365 (666)
| ++||+||||+.+|..+ +...++..+..+ ..+++..|||.+ ..|..|--+ |.+-.+ ..|.++.+|.+
T Consensus 172 fdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATga-sep~NmaYm~RLGLWG~gtpf~~~~~f~~ 250 (303)
T PF13872_consen 172 FDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGA-SEPRNMAYMSRLGLWGPGTPFPDFDDFLE 250 (303)
T ss_pred CCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccccc-CCCceeeeeeeccccCCCCCCCCHHHHHH
Confidence 4 4999999999998643 555666555322 346899999997 344443211 111121 24567778877
Q ss_pred hhhcCcccccccCCCCHHHHHHHhhh-hhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHH
Q 005980 366 RYCKGGVFGIYQGASNHEELHNLMKA-TVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIY 427 (666)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~ 427 (666)
...+++ ....+-+..-|+. -.+++|.. .+.......+.+++++++.+.|.
T Consensus 251 a~~~gG-------v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd 301 (303)
T PF13872_consen 251 AMEKGG-------VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYD 301 (303)
T ss_pred HHHhcC-------chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhc
Confidence 665432 2222333332332 13444432 23344677888999999988775
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.10 E-value=3.9e-09 Score=118.26 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=66.8
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCC-HHHHHHHHHHhcCCCCceEEEEecc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP-PASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~-~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
...|..++++.+.+..+.|..|||-|.++...+.|...|...|+++.+++.... .++=.++|.+ .|.. -.+-++|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~-G~VTIATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRK-GSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCC-CcEEEecc
Confidence 446999999999999899999999999999999999999999999999999742 2333345554 2332 34677888
Q ss_pred ccccccCc
Q 005980 547 AGGVGLTL 554 (666)
Q Consensus 547 a~~~GlnL 554 (666)
.+|.|-|+
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 88988665
No 144
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.08 E-value=9.7e-09 Score=114.50 Aligned_cols=322 Identities=17% Similarity=0.177 Sum_probs=174.0
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC-cchHHHHHHHHHHhcCCC-CcEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS-SLRLHWAAMIQQWLNIPP-SEIVVV 249 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~-~~i~~~ 249 (666)
.|+..|+--...+++..--.|+| +||+|||.-.+..+.++. ..++++||+|+ .|+.|=.+.+.++..... ..+.++
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~ 160 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV 160 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 56778998888888743334555 599999987766666553 45789999999 678898888998873222 333333
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcce
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~ 329 (666)
+ +..-..+....... .-...+.++.|+|-+.+.+..+.+.+.+||+|++|.+..+--.+ +....+..
T Consensus 161 y-h~~l~~~ekee~le----~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas-kNvDriL~------- 227 (1187)
T COG1110 161 Y-HSALPTKEKEEALE----RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS-KNVDRLLR------- 227 (1187)
T ss_pred e-ccccchHHHHHHHH----HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc-ccHHHHHH-------
Confidence 1 11111111111111 11123567899999999999999999999999999998763222 33333332
Q ss_pred EEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhh---hhhhhhehhhhhhhcC
Q 005980 330 ALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMK---ATVMIRRLKKDVLAQL 406 (666)
Q Consensus 330 ~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~lrr~k~~v~~~l 406 (666)
|.|-|= ...+.-+.++.+- ..+. .....+++...+. .....+|.+.
T Consensus 228 ---LlGf~e-E~i~~a~~~~~lr------------~~~~---------~~~~~~~~~e~~~~~e~~~~~~r~k~------ 276 (1187)
T COG1110 228 ---LLGFSE-EVIESAYELIKLR------------RKLY---------GEKRAERVREELREVEREREKKRRKL------ 276 (1187)
T ss_pred ---HcCCCH-HHHHHHHHHHHHH------------HHhh---------hhhhHHHHHHHHHHHHHHHHHhccCC------
Confidence 233220 0000011111100 0000 0111112222211 0111111111
Q ss_pred CcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 407 PVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 407 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
-..+....+-.-...=..+++++-. .- .-+.....+++.. .|..+ .-+..+.++++. -|
T Consensus 277 ----g~LvvsSATg~~rg~R~~LfReLlg---Fe--------vG~~~~~LRNIvD-~y~~~--~~~e~~~elvk~---lG 335 (1187)
T COG1110 277 ----GILVVSSATGKPRGSRLKLFRELLG---FE--------VGSGGEGLRNIVD-IYVES--ESLEKVVELVKK---LG 335 (1187)
T ss_pred ----ceEEEeeccCCCCCchHHHHHHHhC---Cc--------cCccchhhhheee-eeccC--ccHHHHHHHHHH---hC
Confidence 1112222111111000111111100 00 0000001111111 12222 344556666665 47
Q ss_pred CEEEEEecc---HHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE---eccccccccCcc-cCCE
Q 005980 487 CKFLIFAHH---QPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL---SMKAGGVGLTLT-AAST 559 (666)
Q Consensus 487 ~KvlVF~~~---~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~---st~a~~~GlnL~-~a~~ 559 (666)
.-.|||.+- .+.++.|.+.|+..|+++..++.. ..+.++.|..|+ +.+++. .+.++-.||||| .+.+
T Consensus 336 ~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~Ge-idvLVGvAsyYG~lVRGlDLP~rirY 409 (1187)
T COG1110 336 DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGE-VDVLVGVASYYGVLVRGLDLPHRIRY 409 (1187)
T ss_pred CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCc-eeEEEEecccccceeecCCchhheeE
Confidence 788999998 888999999999999999888863 367899999998 233332 235678999997 5899
Q ss_pred EEEecCC
Q 005980 560 VIFAELS 566 (666)
Q Consensus 560 VI~~d~~ 566 (666)
+||+..|
T Consensus 410 aIF~GvP 416 (1187)
T COG1110 410 AVFYGVP 416 (1187)
T ss_pred EEEecCC
Confidence 9999988
No 145
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.01 E-value=2.8e-09 Score=100.58 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHH-HHHHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhc-CCCCcEEEEE
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQA-IAVATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLN-IPPSEIVVVL 250 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~-~~~~~i~~~~ 250 (666)
-|.+.+-.++- |..++.-...|+|||... ++.+..+.. .-.+|++|.+ .|..|-..|..+|.. +|...+.+..
T Consensus 68 vqhecipqail-gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 68 VQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred hhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 47777776665 556666677999999653 333333321 2348999999 799999999998875 4555555554
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChh--HHHHHHhhhhhhh
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQ--AKRTAATLPIIKK 326 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~~ 326 (666)
++..-.+... ....-..+++.|+..+..... .+...+....|+|||..+...- ..-.+.+.+..++
T Consensus 147 GG~~Ikkdee----------~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~ 216 (387)
T KOG0329|consen 147 GGLFIKKDEE----------LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH 216 (387)
T ss_pred cceeccccHH----------HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3322111110 111245688999988875543 3334467789999999774321 1223445555556
Q ss_pred cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcC
Q 005980 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406 (666)
Q Consensus 327 ~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~l 406 (666)
-+.++..|||-- .+++...+ .+| .+
T Consensus 217 ~KQvmmfsatls--------------------------------------------keiRpvC~-kFm-----Qd----- 241 (387)
T KOG0329|consen 217 EKQVMMFSATLS--------------------------------------------KEIRPVCH-KFM-----QD----- 241 (387)
T ss_pred cceeeeeeeecc--------------------------------------------hhhHHHHH-hhh-----cC-----
Confidence 788899999962 11111111 111 00
Q ss_pred CcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 407 PVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 407 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
|- .+++ +++..- ....+...+.......|...+.++|..+ .=
T Consensus 242 Pm----Ei~v--DdE~KL------------------------------tLHGLqQ~YvkLke~eKNrkl~dLLd~L--eF 283 (387)
T KOG0329|consen 242 PM----EIFV--DDEAKL------------------------------TLHGLQQYYVKLKENEKNRKLNDLLDVL--EF 283 (387)
T ss_pred ch----hhhc--cchhhh------------------------------hhhhHHHHHHhhhhhhhhhhhhhhhhhh--hh
Confidence 00 0111 111000 0000001111112234556666666554 44
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
..++||..++.-+ . |+ +. +++++..|.|+++.+.+.+++||.|
T Consensus 284 NQVvIFvKsv~Rl------------------------------~-f~-----kr-~vat~lfgrgmdiervNi~~NYdmp 326 (387)
T KOG0329|consen 284 NQVVIFVKSVQRL------------------------------S-FQ-----KR-LVATDLFGRGMDIERVNIVFNYDMP 326 (387)
T ss_pred cceeEeeehhhhh------------------------------h-hh-----hh-hHHhhhhccccCcccceeeeccCCC
Confidence 6788998765431 0 31 22 7889999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 005980 567 WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 612 (666)
Q Consensus 567 wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~ 612 (666)
-.+..|..+.||++|.|.+.-. +.+++.. -|..++.-.+.+.+
T Consensus 327 ~~~DtYlHrv~rAgrfGtkgla--itfvs~e-~da~iLn~vqdRf~ 369 (387)
T KOG0329|consen 327 EDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNPVQDRFE 369 (387)
T ss_pred CCchHHHHHhhhhhccccccce--eehhcch-hhHHHhchhhHhhh
Confidence 9999999999999999976532 2233322 34445554444443
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=2.8e-08 Score=111.37 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=65.9
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECC-CCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~-~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
...|..++++.+.+..+.|..|||-+.++...+.|...|.+.|+++.+++.. ...++=.+++.+ .|.. -.+-++|.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~-GaVTIATN 497 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRK-GAVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCC-CcEEEecc
Confidence 3579999999999998999999999999999999999999999999999997 332333445554 2332 33566778
Q ss_pred ccccccCc
Q 005980 547 AGGVGLTL 554 (666)
Q Consensus 547 a~~~GlnL 554 (666)
.+|.|-|+
T Consensus 498 MAGRGTDI 505 (939)
T PRK12902 498 MAGRGTDI 505 (939)
T ss_pred CCCCCcCE
Confidence 88888554
No 147
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.97 E-value=1.1e-07 Score=110.30 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccC
Q 005980 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 474 ~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gln 553 (666)
.+.+.|..+...+.+++|+..+..+++.+.+.|....+.. ...|... .|.+++++|+.++ .-+|+.+....||+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~--~~vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGE--QQILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCC--CeEEEecchhhCCCC
Confidence 4455554444556778888888888888888887655444 5666543 3667999999876 457788899999999
Q ss_pred cc--cCCEEEEecCCC
Q 005980 554 LT--AASTVIFAELSW 567 (666)
Q Consensus 554 L~--~a~~VI~~d~~w 567 (666)
++ .+..||+.-+|+
T Consensus 710 ~p~~~~~~viI~kLPF 725 (820)
T PRK07246 710 FVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCeEEEEEecCCC
Confidence 96 356677777563
No 148
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.97 E-value=5.1e-09 Score=92.28 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=69.3
Q ss_pred CeeeecCCCCcHHHHHHH--HHHhcCCCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCC
Q 005980 191 RILLADEMGLGKTIQAIA--VATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala--~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 268 (666)
.-+|-..+|+|||...+- +..++....++||+.|+-++ .+|+.+.+.-.+ +..- ... .
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvv---a~em~~aL~~~~--~~~~-t~~--------------~ 65 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVV---AEEMYEALKGLP--VRFH-TNA--------------R 65 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHTTTSS--EEEE-STT--------------S
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHH---HHHHHHHHhcCC--cccC-cee--------------e
Confidence 346667799999987664 33456678999999999655 355555553221 1111 100 0
Q ss_pred CCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcc--eEEEeeccC
Q 005980 269 KRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ--YALLLSGTP 337 (666)
Q Consensus 269 ~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~--~~llLTgTP 337 (666)
......+..+.+++|.++...... ....+|++||+||||.. ++.+-.......-..... ..+.+||||
T Consensus 66 ~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 66 MRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp S----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred eccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 011223445789999998765432 23358999999999985 444433333222222333 689999999
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=7.2e-08 Score=109.21 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.|..++++.+.++...|..|||-+.++...+.|.+.|...|+++-+++......+- +++.+- |.. -.+-++|..+|
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~A--G~~-GaVTIATNMAG 687 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAEA--GQP-GTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHhc--CCC-CcEEEeccCcC
Confidence 69999999999999999999999999999999999999999999988887553333 344332 221 23567889999
Q ss_pred cccCcc--------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 550 VGLTLT--------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 550 ~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
.|-|+. +.=+||-.+.+-|.....|..||++|.|..-....| + |+|+.++.+.
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~-l----SLEDdLmr~F 748 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY-V----SLEDNLMRLF 748 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE-E----EcccHHHHhh
Confidence 998875 456889999999999999999999999987654433 2 3555555543
No 150
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.95 E-value=2.2e-07 Score=100.02 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=80.4
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhC----Cc----eEEEEECCCCHHHHHHHHHHhcCCC-CceEEEEeccccccccCc
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKK----KV----HCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTL 554 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~----g~----~~~~i~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~a~~~GlnL 554 (666)
+...-+|||-...+..+...+.|.+. +- -+.-++|+.+.++..++ |...+ +++-+++||..+.+.|++
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEe
Confidence 34457999999998888888877664 11 24668999998776554 55444 568899999999999999
Q ss_pred ccCCEEE--------EecCCC-------CcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 555 TAASTVI--------FAELSW-------TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 555 ~~a~~VI--------~~d~~w-------np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
++..+|| .|+|.- -|..-.||.-|++|-|.+.+..+|+|+++.-.|
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 9998887 344421 122334555555555556677889999987663
No 151
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.94 E-value=5e-08 Score=102.06 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=105.7
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCce-EEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~ 562 (666)
..|.=++-|+.. ..-.+...+.+.|.. +.+|+|+.|++.|.+.-..||+.++-..+|++++|.|.||||. .+.|||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEE
Confidence 467777878764 344566667777655 9999999999999999999999776677889999999999985 678888
Q ss_pred ecCC---------CCcchhhhhhhhhhccCCCCc-EEEEEEEeCCCHHHHHHHHHHHHHHHHh-hhhcCCcccccccccc
Q 005980 563 AELS---------WTPGDLIQAEDRAHRIGQVSS-VNVYYLLANDTVDDIVWDVVRSKLENLG-QVLDGHENSLEVSSSQ 631 (666)
Q Consensus 563 ~d~~---------wnp~~~~Qa~gR~~R~Gq~~~-V~v~~lv~~~tiee~i~~~~~~K~~~~~-~~l~~~~~~~~~~~~~ 631 (666)
+++- -+..+..|-.|||+|.|.+-+ -.|-.|..++ =..+-+.+++.-+-+. ..+....+.++.....
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD--L~~L~~~l~~p~epi~~agl~pt~eqie~fa~~ 510 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED--LKLLKRILKRPVEPIKNAGLWPTDEQIELFAYH 510 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh--HHHHHHHHhCCchHHHhccCCccHHHHHHHHHh
Confidence 8865 244566799999999987633 2333232221 0112233333333332 2333333333333333
Q ss_pred ccCChhhHhhHHHHHHhccCCC
Q 005980 632 IRSSPAKQKTLDSFLKRCNNVD 653 (666)
Q Consensus 632 ~~~~~~~~~~l~~~~~~~~~~~ 653 (666)
..+. ..+.-+|.|++.|.-.+
T Consensus 511 ~Pd~-t~snLld~f~~~~~~~~ 531 (700)
T KOG0953|consen 511 LPDA-TPSNLLDIFVKLCEVDG 531 (700)
T ss_pred CCCc-cHHHHHHHHHHHHccCC
Confidence 3222 12337899988887543
No 152
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.87 E-value=2.2e-07 Score=106.20 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=41.3
Q ss_pred CEEEEecCCCCcchhhh--hhhhhhccCCCCcEEEEEEEeCCCHHHHHH-HHHHHHHHHHhhhhcC
Q 005980 558 STVIFAELSWTPGDLIQ--AEDRAHRIGQVSSVNVYYLLANDTVDDIVW-DVVRSKLENLGQVLDG 620 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Q--a~gR~~R~Gq~~~V~v~~lv~~~tiee~i~-~~~~~K~~~~~~~l~~ 620 (666)
++||+|||.-+....+| +.||.+| ++.||.|+..||+||.-| ..+++-.++++.++..
T Consensus 478 ~~VImYEP~~sfIR~IEvyra~r~~r-----~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIre 538 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEVYKASRPLR-----PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIRE 538 (814)
T ss_pred CEEEEECCChHHHHHHHHHHccCCCC-----CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999877777777 5555444 378999999999999744 3344444555555544
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.87 E-value=1.5e-07 Score=104.54 Aligned_cols=315 Identities=17% Similarity=0.196 Sum_probs=171.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 268 (666)
.++-.+||+|||...+-.+... ....++|+|.-. ++..+-...+.... ++ ... .+.+..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~-l~--gFv-~Y~d~~-------------- 113 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG-LS--GFV-NYLDSD-------------- 113 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC-CC--cce-eeeccc--------------
Confidence 4666779999998777766654 346789999776 77766666555431 11 111 111100
Q ss_pred CCCCC-CCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC----hh----HHHHHHhhhhhhhcceEEEeeccCCC
Q 005980 269 KRNIP-LDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN----AQ----AKRTAATLPIIKKAQYALLLSGTPAL 339 (666)
Q Consensus 269 ~~~~~-~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn----~~----s~~~~~~~~l~~~~~~~llLTgTP~~ 339 (666)
..... ....-+++..+++.+....+.. +||+||+||+-.+-+ +. ......+..++.++++++++-||--
T Consensus 114 ~~~i~~~~~~rLivqIdSL~R~~~~~l~-~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln- 191 (824)
T PF02399_consen 114 DYIIDGRPYDRLIVQIDSLHRLDGSLLD-RYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN- 191 (824)
T ss_pred cccccccccCeEEEEehhhhhccccccc-ccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC-
Confidence 00000 1224567888888877654322 599999999854322 11 2233456667778999999999862
Q ss_pred CChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc-CCccc-EEEEEec
Q 005980 340 SRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ-LPVKR-RQQVFLD 417 (666)
Q Consensus 340 n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~-lp~~~-~~~v~~~ 417 (666)
..+..+|..++|+- +..-..+.|..++..+. ..++++++..+++.. +-+.. ..... +
T Consensus 192 ---~~tvdFl~~~Rp~~--~i~vI~n~y~~~~fs~R---------------~~~~~~~l~~~~l~~~~~~~~~~~~~~-~ 250 (824)
T PF02399_consen 192 ---DQTVDFLASCRPDE--NIHVIVNTYASPGFSNR---------------RCTFLRSLGTDTLAAALNPEDENADTS-P 250 (824)
T ss_pred ---HHHHHHHHHhCCCC--cEEEEEeeeecCCcccc---------------eEEEecccCcHHHHHHhCCcccccccC-C
Confidence 33455555565541 12222223322211110 123344444333211 00000 00000 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHH
Q 005980 418 VAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQP 497 (666)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~ 497 (666)
.+.. +. . .. .....+.........|..-+..|+++-|||....
T Consensus 251 -~~~~----------------------~~------~----~~----~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~ 293 (824)
T PF02399_consen 251 -TPKH----------------------SP------D----PT----ATAAISNDETTFFSELLARLNAGKNICVFSSTVS 293 (824)
T ss_pred -CcCC----------------------CC------c----cc----cccccccchhhHHHHHHHHHhCCCcEEEEeChHH
Confidence 0000 00 0 00 0000011122344555555578999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc--CCEEEEe--cCCCCcc--h
Q 005980 498 MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA--ASTVIFA--ELSWTPG--D 571 (666)
Q Consensus 498 ~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~--a~~VI~~--d~~wnp~--~ 571 (666)
..+.+.++....+.++..++|..+..+. ++-.+..| ++=|.+...|+++-. -+.++.| .....|. .
T Consensus 294 ~~~~v~~~~~~~~~~Vl~l~s~~~~~dv-------~~W~~~~V-viYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s 365 (824)
T PF02399_consen 294 FAEIVARFCARFTKKVLVLNSTDKLEDV-------ESWKKYDV-VIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVS 365 (824)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcccc-------ccccceeE-EEEeceEEEEeccchhhceEEEEEecCCCCCCcHHH
Confidence 9999999999999999999988775522 22344444 455567888999853 4555544 2233344 3
Q ss_pred hhhhhhhhhccCCCCcEEEEEE
Q 005980 572 LIQAEDRAHRIGQVSSVNVYYL 593 (666)
Q Consensus 572 ~~Qa~gR~~R~Gq~~~V~v~~l 593 (666)
..|.+||+-.+.. +.+.||.-
T Consensus 366 ~~Q~lgRvR~l~~-~ei~v~~d 386 (824)
T PF02399_consen 366 VYQMLGRVRSLLD-NEIYVYID 386 (824)
T ss_pred HHHHHHHHHhhcc-CeEEEEEe
Confidence 6899999977664 44555543
No 154
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.85 E-value=6.1e-07 Score=99.59 Aligned_cols=180 Identities=19% Similarity=0.166 Sum_probs=106.8
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
+-.||++-+. .+.++..++|..+|-+|||+..--++... .+.+-++-|+|+ +++.|=..++...++.+...-.+.
T Consensus 512 Pd~WQ~elLD-svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLD-SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhh-hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 4457887774 45557788888889999999876655533 346678889999 788887777765553221110000
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---Hh--cCCccEEEEcCccccCChhHH-HHHHhhhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LM--SSNFKIVIADESHFLKNAQAK-RTAATLPI 323 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~--~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l 323 (666)
. .+.-.+ ..........|.||-++.+....-. -. --+..+||+||.|.+.+..-. ....+..+
T Consensus 591 l--~g~ltq---------EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 591 L--LGDLTQ---------EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred h--HhhhhH---------HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 0 000000 0111234677899999888654321 00 125679999999999986543 33333333
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCC--CCCCCHHHHhhhhhc
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYP--DVYKNVHEYGNRYCK 369 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p--~~~~~~~~f~~~~~~ 369 (666)
-.-..++||||- +++..+...++-... +.--....|.++|+.
T Consensus 660 --i~CP~L~LSATi--gN~~l~qkWlnq~~R~~sr~~eli~~~erySe 703 (1330)
T KOG0949|consen 660 --IPCPFLVLSATI--GNPNLFQKWLNQRGRAMSRNAELIDYGERYSE 703 (1330)
T ss_pred --cCCCeeEEeccc--CCHHHHHHHHHHHHhhcCCCeeeeehhhhhhh
Confidence 233458999997 777777776663322 111223445556654
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.82 E-value=2.1e-07 Score=109.41 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIV 264 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 264 (666)
+.++++.+-+|+|||++++-++..+.+ ...+++||=. .|-.|-.+++..+....... . ...+...-....
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~-----~-~~~s~~~Lk~~l 346 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND-----P-KAESTSELKELL 346 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc-----c-cccCHHHHHHHH
Confidence 346899999999999999988776643 3446677766 78889999999885321110 0 000000000001
Q ss_pred ecCCCCCCCCCCcEEEEeHHHHHHHHHH----HhcCCccEEEEcCccccCChhHH-HHHHhhhhhhhcceEEEeeccCCC
Q 005980 265 SSNTKRNIPLDGLFNIISYDVVLKLQNI----LMSSNFKIVIADESHFLKNAQAK-RTAATLPIIKKAQYALLLSGTPAL 339 (666)
Q Consensus 265 ~~~~~~~~~~~~~v~I~sy~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~~~~~~~llLTgTP~~ 339 (666)
.. ....++|||-+-+...... ....+.-+||+||||+--.+... ..+... +...-+++||||+.
T Consensus 347 ~~-------~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~----~~a~~~gFTGTPi~ 415 (962)
T COG0610 347 ED-------GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKAL----KKAIFIGFTGTPIF 415 (962)
T ss_pred hc-------CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHh----ccceEEEeeCCccc
Confidence 00 1446889998888765432 23345569999999987554322 222222 34667999999976
Q ss_pred CC
Q 005980 340 SR 341 (666)
Q Consensus 340 n~ 341 (666)
..
T Consensus 416 ~~ 417 (962)
T COG0610 416 KE 417 (962)
T ss_pred cc
Confidence 43
No 156
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.72 E-value=5.3e-08 Score=96.58 Aligned_cols=97 Identities=28% Similarity=0.413 Sum_probs=81.6
Q ss_pred HHHHHhcCCCCceEEEEeccccccccCcccC--------CEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 527 ALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA--------STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 527 ~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a--------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
...+.|++|.. .++|+ ++||++||+|++- .+-|.++++|+....+|.+||+||-||.+...+..+++.-.
T Consensus 52 ~e~~~F~~g~k-~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGEK-DVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCCc-eEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45779999983 44555 5999999999853 24478999999999999999999999998866666777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcccc
Q 005980 599 VDDIVWDVVRSKLENLGQVLDGHENSL 625 (666)
Q Consensus 599 iee~i~~~~~~K~~~~~~~l~~~~~~~ 625 (666)
.|.+....+.+|++.++++..|+..+.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~~ 156 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRAG 156 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCccccc
Confidence 899999999999999999999987653
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.62 E-value=3.6e-05 Score=88.32 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHHH-------cCCCeeeecCCCCcHHHHHHHHHHhcCCCCc--EEEEe--CCcchHHHHHHHHHHhcCC
Q 005980 174 LLPFQRDGVRFALQ-------HGGRILLADEMGLGKTIQAIAVATCFRDVWP--VLILT--PSSLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 174 L~p~Q~~~v~~~~~-------~~~~~iLad~~GlGKTi~ala~~~~~~~~~~--~LIv~--P~sl~~qW~~e~~~~~~~~ 242 (666)
=+-+|-.|++.+.. +|.-++--..||+|||+.=.-++..+.+..+ =+.|+ =.+|..|=-+++++-+++.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 35689999987753 2333444456999999988777777765443 22333 2377777788888888877
Q ss_pred CCcEEEEEecCC------------------CCCc-c-----c----eeEEec-------------CCCCCCCCCCcEEEE
Q 005980 243 PSEIVVVLSQLG------------------GSNR-S-----G----FTIVSS-------------NTKRNIPLDGLFNII 281 (666)
Q Consensus 243 ~~~i~~~~~~~~------------------~~~~-~-----~----~~~~~~-------------~~~~~~~~~~~v~I~ 281 (666)
..++.|.+++.. |+.. . . +.-+.. ..+........|.|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 777777665210 0000 0 0 000000 001111123457888
Q ss_pred eHHHHHHHHHH---------HhcCCccEEEEcCccccCChhHHHHHHhhhhh-hhcceEEEeeccCCC
Q 005980 282 SYDVVLKLQNI---------LMSSNFKIVIADESHFLKNAQAKRTAATLPII-KKAQYALLLSGTPAL 339 (666)
Q Consensus 282 sy~~l~~~~~~---------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~~~~~~llLTgTP~~ 339 (666)
|.+.+...... +...--..||+||.|.+-.........+..++ .-..++++||||--.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 88887654321 22334578999999998554433333333322 135778999999643
No 158
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=95.28 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=89.7
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCC---ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEE
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKK---VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV 560 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~V 560 (666)
.+-.|.||||......|.|++++..+| +.++.++|...+.+|.+-++.|...+ ..+|++|+++..|||++..-.+
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d--vkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD--VKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC--eEEEEEehhhhccccccCCceE
Confidence 367899999999999999999999874 57899999999999999999999888 7799999999999999999999
Q ss_pred EEecCCCCcchhhhhhhhhhcc
Q 005980 561 IFAELSWTPGDLIQAEDRAHRI 582 (666)
Q Consensus 561 I~~d~~wnp~~~~Qa~gR~~R~ 582 (666)
|+..+|-....|..||||++|.
T Consensus 581 invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEEecCcccchhhhhhhccchh
Confidence 9999999999999999988873
No 159
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.51 E-value=4.8e-06 Score=89.13 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred CCEEEEEeccHHHHHHHHHHHHh----CC-----ceEEEEECCCCHHHHHHHHHHhcCC-CCceEEEEeccccccccCcc
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLK----KK-----VHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLT 555 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~----~g-----~~~~~i~G~~~~~~R~~~i~~F~~~-~~~~v~L~st~a~~~GlnL~ 555 (666)
..-+|||-...+..+...+.|.. .| +-++-|+.+.|++....+ |+.- ++++-++++|..+.+.|++.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeec
Confidence 35677777666655544443332 22 235667888887766555 4443 34688899999999999999
Q ss_pred cCCEEEE------------------ecCCCCcchhhhhhhhhhccCCCCcEEEEEEEe
Q 005980 556 AASTVIF------------------AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 556 ~a~~VI~------------------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~ 595 (666)
+...||= +--|-+.+.-.||.||++|.|..+. |+|++
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKC---fRLYt 604 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKC---FRLYT 604 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCce---EEeec
Confidence 9988871 1112244566799999999997776 66665
No 160
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.50 E-value=7.3e-06 Score=87.96 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=74.3
Q ss_pred CEEEEEeccHH----HHHHHHHHHHh------CCceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEeccccccccCcc
Q 005980 487 CKFLIFAHHQP----MLDAIHQLFLK------KKVHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTLT 555 (666)
Q Consensus 487 ~KvlVF~~~~~----~~~~l~~~L~~------~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~GlnL~ 555 (666)
.-+|||-...+ +.+.|...|.. .++.+.-|+.+.|+.-..++ |+. ..+.+-++++|..+.+.|+++
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeec
Confidence 45667754433 34445554433 25678889999987655444 553 334688999999999999999
Q ss_pred cCCEEEEe--------cC----------CCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 005980 556 AASTVIFA--------EL----------SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 604 (666)
Q Consensus 556 ~a~~VI~~--------d~----------~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~ 604 (666)
+..+||=. .+ |-+-+.-.||.|||+|- .+-+.|+++++++..+.|+
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt---~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT---GPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC---CCcceeeehhhhHHHhhcc
Confidence 99998732 11 12333445666666664 4668899999988777665
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.47 E-value=7.2e-06 Score=92.03 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=97.3
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+......|.++||-+.+.+..+.+...|.+.|+++..++..-...+ .-+-.+.-.. -.+=++|..
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E--A~Iia~AG~~--gaVTiATNM 486 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE--AEIIAQAGQP--GAVTIATNM 486 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH--HHHHhhcCCC--Ccccccccc
Confidence 457999999999999999999999999999999999999999999999998877433 3333332222 234567888
Q ss_pred cccccCccc-CC----------EEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 548 GGVGLTLTA-AS----------TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 548 ~~~GlnL~~-a~----------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
+|.|-|+.- .+ +||=.+.+-+.....|-.||++|.|-. ...-+++. .|+.++.+.
T Consensus 487 AGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp-G~S~F~lS----leD~L~r~F 552 (822)
T COG0653 487 AGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP-GSSRFYLS----LEDDLMRRF 552 (822)
T ss_pred ccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc-chhhhhhh----hHHHHHHHh
Confidence 999988853 22 567777777777888999999999933 23344443 444444443
No 162
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.45 E-value=1.5e-05 Score=90.69 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHhC-------CceEEEEECCCCHHHHHHHHHHhcCCCCceEEE
Q 005980 472 IPAVLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLKK-------KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAV 542 (666)
Q Consensus 472 l~~l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~-------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 542 (666)
...+.+++..+. .....+|||-.....+..+.+.|... .+-+..+|++++..+.+.+...--.| ++-+|
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g--~RKII 474 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG--TRKII 474 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC--cchhh
Confidence 333444444332 23568999999999988888888642 35677889999988877776554443 47789
Q ss_pred EeccccccccCcccCCEEE--------EecCCC----------CcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 543 LSMKAGGVGLTLTAASTVI--------FAELSW----------TPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 543 ~st~a~~~GlnL~~a~~VI--------~~d~~w----------np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
++|..+.++|++.++-+|| .||+.- +.+.-.||.||++|.- +-..|+|++..-
T Consensus 475 laTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 475 LATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYTRSR 545 (924)
T ss_pred hhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeechhh
Confidence 9999999999999988887 355432 4455679999998854 446688887654
No 163
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5.4e-06 Score=90.47 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=53.1
Q ss_pred EEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE--------ec---------CCC-Ccchhhhh
Q 005980 514 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF--------AE---------LSW-TPGDLIQA 575 (666)
Q Consensus 514 ~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~--------~d---------~~w-np~~~~Qa 575 (666)
.-++.=.+.++..++.+.--. +++.++++|.++.+.|++++..+||= || -.| +-+.-.||
T Consensus 608 LPLYSLLs~~~Q~RVF~~~p~--g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 608 LPLYSLLSTEKQMRVFDEVPK--GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred eehhhhcCHHHhhhhccCCCC--CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 334444454444444433323 35899999999999999999999983 22 223 55667799
Q ss_pred hhhhhccCCCCcEEEEEEEeC
Q 005980 576 EDRAHRIGQVSSVNVYYLLAN 596 (666)
Q Consensus 576 ~gR~~R~Gq~~~V~v~~lv~~ 596 (666)
.|||+|+|..+. |||++.
T Consensus 686 AGRAGRtgpGHc---YRLYSS 703 (1172)
T KOG0926|consen 686 AGRAGRTGPGHC---YRLYSS 703 (1172)
T ss_pred ccccCCCCCCce---eehhhh
Confidence 999999996654 777653
No 164
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.24 E-value=4.1e-05 Score=79.41 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=67.3
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHh----C-----CceEEEEECCCCHHHHHHHHHHhcC---CCCceEEEEecccccccc
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLK----K-----KVHCIRIDGGTPPASRQALVTEFQE---KDDVKAAVLSMKAGGVGL 552 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~----~-----g~~~~~i~G~~~~~~R~~~i~~F~~---~~~~~v~L~st~a~~~Gl 552 (666)
...-+|||-...+..+...+.+.. . ..+++-++ +.+.+.+.+--.. +...+-+++||..+.+.+
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 345688887776665554444432 1 12344444 2333333332221 222467899999999999
Q ss_pred CcccCCEEEEecCC-----------------CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 553 TLTAASTVIFAELS-----------------WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 553 nL~~a~~VI~~d~~-----------------wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
++.+.-+|| ||. -+|..-.||.-|++|.|.+++-..++|+++...+
T Consensus 328 tidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 328 TIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 988876665 332 2445556788888888888888889999875443
No 165
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.23 E-value=1.5e-05 Score=83.80 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=102.5
Q ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHH----hCCc----eEEEEECCCCHHHHHHHHHHhcCCCCceE
Q 005980 469 EAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFL----KKKV----HCIRIDGGTPPASRQALVTEFQEKDDVKA 540 (666)
Q Consensus 469 ~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~----~~g~----~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 540 (666)
+.|+.....++.++...|-++|-||..+...+.+....+ ..|- .+..+.|+...++|.++-...-.|. ..
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~--L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK--LC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe--ee
Confidence 357777888888888899999999999988776554332 2221 3556889999999999877766676 66
Q ss_pred EEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHH
Q 005980 541 AVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIV 603 (666)
Q Consensus 541 ~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i 603 (666)
-+++|.|+..|||+...+.|+.+..|.+.+.+.|..||++|-... -...+.+..+.+|...
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~--SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP--SLAVYVAFLGPVDQYY 646 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC--ceEEEEEeccchhhHh
Confidence 789999999999999999999999999999999999999996533 2333345556666643
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=1.4e-05 Score=91.69 Aligned_cols=71 Identities=13% Similarity=0.024 Sum_probs=57.8
Q ss_pred ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccC-----CC---CcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 538 VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIG-----QV---SSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 538 ~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G-----q~---~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
...+++|-.|+.||.|.+.+-.+.-+...-+...-.|-+||..|+- .. ..+ ...+++..|-++..-.++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~E 579 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVGE 579 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHHH
Confidence 4789999999999999999999999998999999999999999974 21 346 66777777777766655544
No 167
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.19 E-value=2.5e-05 Score=88.14 Aligned_cols=128 Identities=14% Similarity=0.076 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCC
Q 005980 198 MGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLD 275 (666)
Q Consensus 198 ~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
.|+|||-.-+.++... ...+.+||++|. ++..|+...+++.++ ...+.++.+..+ ..+++..|..... ..
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~--~~~R~~~w~~~~~----G~ 240 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLG--PADRYRRWLAVLR----GQ 240 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCC--HHHHHHHHHHHhC----CC
Confidence 5999999988777654 456789999999 899999999999985 223444332222 2222222221111 22
Q ss_pred CcEEEEeHHHHHHHHHHHhcCCccEEEEcCcccc--CChhH----HHHHHhhhhhhhcceEEEeeccCC
Q 005980 276 GLFNIISYDVVLKLQNILMSSNFKIVIADESHFL--KNAQA----KRTAATLPIIKKAQYALLLSGTPA 338 (666)
Q Consensus 276 ~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~--kn~~s----~~~~~~~~l~~~~~~~llLTgTP~ 338 (666)
..|+|-|...+..= -.+.++||+||=|.- |...+ .+--++.+-.......++.|+||.
T Consensus 241 ~~IViGtRSAvFaP-----~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 241 ARVVVGTRSAVFAP-----VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CcEEEEcceeEEec-----cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 34677765543211 236799999999964 33211 122222222123455678899993
No 168
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=98.07 E-value=4.1e-06 Score=60.49 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=43.8
Q ss_pred EEEEecCCHHHHHHHhcCCCcccccccceeeecCcchhHHHHHHHHhc
Q 005980 86 IAAKFTYDPVLVSAFRKIPKATWNAKERLWTFPVPFLSSAEKVLSEIS 133 (666)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (666)
|++.++|++++++.||++|++.||.++|.|.|..++|..+.+.++...
T Consensus 1 F~v~igy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L~~~~~~l~ 48 (55)
T PF07443_consen 1 FEVDIGYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYSTLMKKVRNLP 48 (55)
T ss_pred CeeeccCCHHHHHHHHcCcccccCccceeeeeeHHHHHHHHHHHhcCC
Confidence 457779999999999999999999999999999999999988888763
No 169
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.95 E-value=1.5e-05 Score=79.00 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=47.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc---------CCCCcEEEEeCC-cchHHHHHHHHH
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF---------RDVWPVLILTPS-SLRLHWAAMIQQ 237 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~---------~~~~~~LIv~P~-sl~~qW~~e~~~ 237 (666)
+|-+.|.+|+..++..+.=+++..++|+|||.+..+++..+ ....++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 36789999999998855337889999999997776666654 457789999999 567777776666
No 170
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.80 E-value=6.6e-05 Score=67.08 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=70.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC------CCc-EEEEeCCcc-hHHHHHHHHHHhcCCCCcEEEEEecCCCCCccc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD------VWP-VLILTPSSL-RLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSG 260 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~------~~~-~LIv~P~sl-~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~ 260 (666)
++-+++..+.|+|||..+-.++..+.. ..+ +.+-+|..- ...+..++...++.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--------------- 68 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------------
Confidence 456788889999999999888876642 233 344455543 566777777766433211
Q ss_pred eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccC
Q 005980 261 FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP 337 (666)
.....+........+......+||+||+|++. +......+..+.......++|+|||
T Consensus 69 ------------------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------------------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ------------------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 01123333344455555555799999999983 2344555555555778889999999
No 171
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.80 E-value=0.00022 Score=79.74 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCC--CCceEEEEeccccc
Q 005980 474 AVLDYLETVIE--AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK--DDVKAAVLSMKAGG 549 (666)
Q Consensus 474 ~l~~~l~~~~~--~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~--~~~~v~L~st~a~~ 549 (666)
.+.+.+..++. .|+-.++|+.+ ..+..+...|...---.+.+.|..+ .|..++++|+.. .+..-+|+.+.++.
T Consensus 457 ~~~~~~~~~~~~~~G~~lvLfTS~-~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 457 NVSLSTAAILRKAQGGTLVLTTAF-SHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHHHcCCCEEEEechH-HHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 45555555543 45566666665 4556666666553213355666544 567899999975 11145788999999
Q ss_pred cccCc--------c--cCCEEEEecCCCCcchh
Q 005980 550 VGLTL--------T--AASTVIFAELSWTPGDL 572 (666)
Q Consensus 550 ~GlnL--------~--~a~~VI~~d~~wnp~~~ 572 (666)
||+|+ + .++.||+.-+|+-|..-
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCCCCcCCh
Confidence 99999 2 48999999999877443
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.79 E-value=0.00013 Score=70.24 Aligned_cols=130 Identities=25% Similarity=0.255 Sum_probs=69.8
Q ss_pred cCchHHHHHHHHHHHcCCC-eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGR-ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~-~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
+|-+-|++++..++..+.+ +++....|+|||...-.++..+.. ..++++++|+.-. ..++.+-++++...+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~A---a~~L~~~~~~~a~Ti---- 73 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKA---AKELREKTGIEAQTI---- 73 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHHTS-EEEH----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHH---HHHHHHhhCcchhhH----
Confidence 3678899999999875544 567688999999887666655543 5789999999532 223444433221100
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceE
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYA 330 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~ 330 (666)
...-.... . ..... ... ....++||||||-.+... ....+...+....-+
T Consensus 74 ~~~l~~~~-------~-~~~~~--~~~-----------------~~~~~vliVDEasmv~~~---~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 74 HSFLYRIP-------N-GDDEG--RPE-----------------LPKKDVLIVDEASMVDSR---QLARLLRLAKKSGAK 123 (196)
T ss_dssp HHHTTEEC-------C-EECCS--SCC------------------TSTSEEEESSGGG-BHH---HHHHHHHHS-T-T-E
T ss_pred HHHHhcCC-------c-ccccc--ccc-----------------CCcccEEEEecccccCHH---HHHHHHHHHHhcCCE
Confidence 00000000 0 00000 000 235689999999998554 344444444455778
Q ss_pred EEeeccCCC
Q 005980 331 LLLSGTPAL 339 (666)
Q Consensus 331 llLTgTP~~ 339 (666)
++|.|-|.+
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999843
No 173
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.49 E-value=0.0003 Score=74.45 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=34.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCCc-chHHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPSS-LRLHWAAMIQQ 237 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~s-l~~qW~~e~~~ 237 (666)
+++-...|+|||+.|+.++..+ ......+++|++. +...-...+.+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 4677889999999999999987 3466788888884 44444444443
No 174
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0017 Score=66.36 Aligned_cols=58 Identities=26% Similarity=0.372 Sum_probs=41.9
Q ss_pred CChhhhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 166 IPAHIESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 166 ~p~~~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
.|..|++-++|| .++|+..++|+|||+.|=|++.. ++.+.+=+-+ .|...|.-|-++.
T Consensus 234 mPe~F~GirrPW------------kgvLm~GPPGTGKTlLAKAvATE---c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 234 MPEFFKGIRRPW------------KGVLMVGPPGTGKTLLAKAVATE---CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred hHHHHhhccccc------------ceeeeeCCCCCcHHHHHHHHHHh---hcCeEEEechhhhhhhhccchHHH
Confidence 455566666665 37799999999999999988775 3455555554 6788887776654
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.37 E-value=0.00055 Score=64.06 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=56.3
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCc--eEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc--ccccccCccc--CC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKV--HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK--AGGVGLTLTA--AS 558 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~--~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~--a~~~GlnL~~--a~ 558 (666)
.+.++|||..+-..++.+.+.+...+. .+..+.- +..++..+++.|..++ ..+|+++. ...||+|+++ |.
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~--~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGE--GAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSS--SEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhcc--CeEEEEEecccEEEeecCCCchhh
Confidence 578999999999999999999987642 1122222 2458899999999987 45666666 8999999985 88
Q ss_pred EEEEecCCC
Q 005980 559 TVIFAELSW 567 (666)
Q Consensus 559 ~VI~~d~~w 567 (666)
.||+..+|+
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 999998886
No 176
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.00067 Score=64.93 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
.++..+||.|||..++.++..+. ...+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46788899999999998888663 4567787766
No 177
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=97.30 E-value=0.0098 Score=60.66 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=83.9
Q ss_pred CccccHHHHHHHHHHH-----HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHH------------
Q 005980 467 SAEAKIPAVLDYLETV-----IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALV------------ 529 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~-----~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i------------ 529 (666)
..|+|+..+-+++..+ ...+.+++|.++...+++.|+..|..+++.+.++.|.....+....-
T Consensus 93 ~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~ 172 (297)
T PF11496_consen 93 YTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNN 172 (297)
T ss_dssp HT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-------------
T ss_pred HcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccc
Confidence 3578999999999988 44577999999999999999999999999999999976654444333
Q ss_pred HHhc--CCCCceEEEEeccccccc----cCcccCCEEEEecCCCCcchhh-hhhhhhhccCCCCcEEEEEEEeCCCHHHH
Q 005980 530 TEFQ--EKDDVKAAVLSMKAGGVG----LTLTAASTVIFAELSWTPGDLI-QAEDRAHRIGQVSSVNVYYLLANDTVDDI 602 (666)
Q Consensus 530 ~~F~--~~~~~~v~L~st~a~~~G----lnL~~a~~VI~~d~~wnp~~~~-Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~ 602 (666)
.... ...++.+.|++++-.... ++-...+.||-+|+.+++..-. |.+-..+|.+ +.+-|++|+..+|+|-.
T Consensus 173 ~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi 250 (297)
T PF11496_consen 173 SKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHI 250 (297)
T ss_dssp ---------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEEEETTSHHHH
T ss_pred cccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHH
Confidence 0111 112355667766544331 2234578999999999887643 4443333333 78999999999999987
Q ss_pred HHHHHH
Q 005980 603 VWDVVR 608 (666)
Q Consensus 603 i~~~~~ 608 (666)
+...-.
T Consensus 251 ~L~~~~ 256 (297)
T PF11496_consen 251 ELCFPK 256 (297)
T ss_dssp HHHHTT
T ss_pred HHHccC
Confidence 765443
No 178
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.21 E-value=0.00052 Score=73.81 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=53.1
Q ss_pred hhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcc-hHHHHHHH
Q 005980 170 IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSL-RLHWAAMI 235 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl-~~qW~~e~ 235 (666)
+...|-+-|+.|+.+++....=.++-.++|+|||.+..-++..+ ....++||.+|+.+ ++|-.+.+
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHh
Confidence 44578889999999999765566888899999999988877765 55789999999954 77766643
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.06 E-value=0.00066 Score=65.00 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCCc
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPSS 226 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~s 226 (666)
.-+.|..+++.+.. ..-+++..+.|+|||+.|++.+..+ ....+++|+-|..
T Consensus 5 ~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 5 KNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp -SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 34689999998885 5578888999999999999888755 2344677776753
No 180
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.01 E-value=0.0027 Score=63.39 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=65.6
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcch----HHHHHHHHHHhcCCCCcE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLR----LHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~----~qW~~e~~~~~~~~~~~i 246 (666)
..+++-|.-|+-.+ ..|. |.-..||=|||+++...+... ....++=||+.+..+ .+|...+-+++|+...
T Consensus 76 ~~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~-- 150 (266)
T PF07517_consen 76 LRPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG-- 150 (266)
T ss_dssp ----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE--
T ss_pred CcccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc--
Confidence 45667788777544 3343 778889999999986555433 346778888888443 3388888888876532
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH--HH-------HhcCCccEEEEcCcccc
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ--NI-------LMSSNFKIVIADESHFL 309 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~--~~-------l~~~~~~~vIiDEaH~~ 309 (666)
.+.... ....+. .....+|+-+|-..+..+. +. .....++++|+||+..+
T Consensus 151 -~~~~~~--~~~~r~----------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 151 -IITSDM--SSEERR----------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -EEETTT--EHHHHH----------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -cCcccc--CHHHHH----------HHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 111111 000000 0012336666665554321 11 11347899999999876
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0046 Score=55.23 Aligned_cols=43 Identities=26% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCC-cEEEEeCCcchHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVW-PVLILTPSSLRLHW 231 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~-~~LIv~P~sl~~qW 231 (666)
+..++|..++|+|||..+..++..+.... .++.+.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC
Confidence 34678999999999999999988876554 67777777554443
No 182
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.88 E-value=0.0078 Score=71.75 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCc--eEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc
Q 005980 472 IPAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKV--HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548 (666)
Q Consensus 472 l~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~--~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~ 548 (666)
...+.+.|..+.. .+.+++||..+..++..+.+.|..... .+..+.-+.+...|.+++++|+.++ ..+|+.+.+.
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~--~~iLlG~~sF 814 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFD--KAILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcC--CeEEEecCcc
Confidence 3566666666653 456788877788888888888875422 1223332333346899999999876 4467778999
Q ss_pred ccccCccc--CCEEEEecCCC-Ccc
Q 005980 549 GVGLTLTA--ASTVIFAELSW-TPG 570 (666)
Q Consensus 549 ~~GlnL~~--a~~VI~~d~~w-np~ 570 (666)
.||+|+++ ++.||+.-+|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999986 58999999887 454
No 183
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.88 E-value=0.0059 Score=72.76 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=47.1
Q ss_pred cCchHHHHHHH---HHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHH-HHHH---HHHHhcC
Q 005980 173 KLLPFQRDGVR---FALQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLH-WAAM---IQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~---~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~q-W~~e---~~~~~~~ 241 (666)
+.||-|.+-.+ ..+..+..+++-.+||+|||+.-+.-+..+ ....|++|.+++ .|-.| +.++ +++.++.
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~ 335 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFPF 335 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCC
Confidence 78999999544 445556666677789999999876544432 356889999998 56666 4444 4455544
No 184
>PRK10536 hypothetical protein; Provisional
Probab=96.86 E-value=0.0099 Score=58.70 Aligned_cols=38 Identities=24% Similarity=0.073 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
.-..|...+.++.+ +.-+++..+.|+|||+.|++++..
T Consensus 60 ~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 60 RNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45578888887766 457788899999999999998874
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.77 E-value=0.0036 Score=67.82 Aligned_cols=65 Identities=28% Similarity=0.346 Sum_probs=53.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCCcc-hHHHHHHHHHH
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPSSL-RLHWAAMIQQW 238 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~sl-~~qW~~e~~~~ 238 (666)
+|---|..||+..+.+.- -||-.++|+|||++..+++..+ ...+|+||++|+.+ ++|-.+.|.+-
T Consensus 410 kLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 677899999999998664 4778889999999988887766 34789999999964 88888888764
No 186
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.75 E-value=0.02 Score=66.66 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=67.8
Q ss_pred HHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch-----HHHHHHHHHHhcCCCCcEEEEEecCCCCCcc
Q 005980 185 ALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR-----LHWAAMIQQWLNIPPSEIVVVLSQLGGSNRS 259 (666)
Q Consensus 185 ~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~-----~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~ 259 (666)
+...+..++++.+.|+|||++|=-++..-....++.-++|...+ ..|...|..-+|. ..+.. +|...-
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~----~~~~l---~ge~s~ 1227 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL----RIVKL---TGETSL 1227 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCc----eEEec---CCcccc
Confidence 33447789999999999999886555543446678999998543 2355555544331 11211 121111
Q ss_pred ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 005980 260 GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn 311 (666)
+ ......+++.|.|++...... .-...++.|+||.|.+.+
T Consensus 1228 ~---------lkl~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1228 D---------LKLLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred c---------hHHhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcc
Confidence 1 111234568899988877663 234678999999999975
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.74 E-value=0.0086 Score=69.18 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=46.2
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCC---CcEEEEeCCcchHH
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDV---WPVLILTPSSLRLH 230 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~---~~~LIv~P~sl~~q 230 (666)
...|-+-|++++..+..+ +-++|....|+|||.++-+++..+... .++++++|+.-...
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred CCCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 357899999999998764 467888999999999887777766433 57888999965443
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.023 Score=60.29 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCCc--chHHHHHHHHHHhcCCCCcEEEEEecCCCCCcccee
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPSS--LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~s--l~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 262 (666)
+-+++..++|+|||.++.-++..+. ...++.+|+-.. .-..|+ +..|...-...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV---------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce----------------
Confidence 4567889999999999988887663 245677776543 222222 444542110000
Q ss_pred EEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh----hcceEEEeeccCC
Q 005980 263 IVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK----KAQYALLLSGTPA 338 (666)
Q Consensus 263 ~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~----~~~~~llLTgTP~ 338 (666)
..+-+++.+......+ .++++||+|++.+....... ...+..++. .....+.|+||--
T Consensus 237 ---------------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 237 ---------------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ---------------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 1233566665544443 46899999999987643221 222222222 2245699999986
Q ss_pred CCChHHHHHHHHHh
Q 005980 339 LSRPIELFKQLEAL 352 (666)
Q Consensus 339 ~n~~~el~~~l~~l 352 (666)
.+...+.+.....+
T Consensus 299 ~~~~~~~~~~~~~~ 312 (388)
T PRK12723 299 TSDVKEIFHQFSPF 312 (388)
T ss_pred HHHHHHHHHHhcCC
Confidence 66666666555443
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.71 E-value=0.026 Score=50.65 Aligned_cols=51 Identities=33% Similarity=0.299 Sum_probs=33.0
Q ss_pred HHHHHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcch
Q 005980 178 QRDGVRFALQH--GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLR 228 (666)
Q Consensus 178 Q~~~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~ 228 (666)
+...+...+.. +..+++..++|+|||..+-.++..+.. ..+++.+......
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 44444444443 557899999999999988888776632 3455555544433
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.62 E-value=0.0038 Score=60.37 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=53.1
Q ss_pred hcCchHHHHHHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhc-CCCCc-EEEEeCCcchHHHHHHHHHHhc
Q 005980 172 SKLLPFQRDGVRFALQH--GGRILLADEMGLGKTIQAIAVATCF-RDVWP-VLILTPSSLRLHWAAMIQQWLN 240 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~-~~~~~-~LIv~P~sl~~qW~~e~~~~~~ 240 (666)
..+||-|.+.+..+++. |.+.++-.-||-|||-+.+=+++.. .+..+ +-+|||.+++.|-..-+...++
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 36899999999999863 5677888889999998766544443 33333 6788999999999888888775
No 191
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.59 E-value=0.0061 Score=68.19 Aligned_cols=46 Identities=17% Similarity=-0.018 Sum_probs=43.0
Q ss_pred ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccC
Q 005980 538 VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 538 ~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
...|+.|-.|+-||.|=|..=++.-+-++-+...-.|-+||..|+-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 3789999999999999999999999999999999999999999975
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.57 E-value=0.017 Score=58.20 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-------CCcEEEE-eCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-------VWPVLIL-TPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSG 260 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-------~~~~LIv-~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~ 260 (666)
.+.+|..++|.|||.++=-+...+.. ..|+++| +|. .-.......|-..++.|... ..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~----------~~--- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP----------RD--- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC----------CC---
Confidence 36788888999999988777765521 2355544 565 55666777777777654210 00
Q ss_pred eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh----hcceEEEeecc
Q 005980 261 FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK----KAQYALLLSGT 336 (666)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~----~~~~~llLTgT 336 (666)
.....-......+...+..++|+||.|++-..+...-+.++..++ .-+--+.+-||
T Consensus 129 --------------------~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 129 --------------------RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred --------------------CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 011111222345667789999999999976544433333333222 22334777888
Q ss_pred C
Q 005980 337 P 337 (666)
Q Consensus 337 P 337 (666)
+
T Consensus 189 ~ 189 (302)
T PF05621_consen 189 R 189 (302)
T ss_pred H
Confidence 7
No 193
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.53 E-value=0.023 Score=65.52 Aligned_cols=91 Identities=14% Similarity=0.365 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcC----CCCceEEEEecc
Q 005980 472 IPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQE----KDDVKAAVLSMK 546 (666)
Q Consensus 472 l~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~----~~~~~v~L~st~ 546 (666)
...+.+.|..+...+.+++||..+..+++.+...|... +. -+.+.|.. .|.++++.|++ ++ ..+|+++.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~--~~VL~g~~ 593 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGE--GSVLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCC--CeEEEEec
Confidence 45677777777666666888888888888888888653 33 34556642 57788877764 44 34566779
Q ss_pred ccccccCccc--CCEEEEecCCCC
Q 005980 547 AGGVGLTLTA--ASTVIFAELSWT 568 (666)
Q Consensus 547 a~~~GlnL~~--a~~VI~~d~~wn 568 (666)
...||||+++ ++.||+.-+|+-
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred cccccccCCCCceEEEEEEcCCCC
Confidence 9999999975 899999988763
No 194
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.50 E-value=0.013 Score=67.56 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=40.4
Q ss_pred hcCchHHHHHHHH---HHHc-----CCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHH-HHHH
Q 005980 172 SKLLPFQRDGVRF---ALQH-----GGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLH-WAAM 234 (666)
Q Consensus 172 ~~L~p~Q~~~v~~---~~~~-----~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~q-W~~e 234 (666)
.+.||-|.+.... .+.. ++.+++=.+||+|||+--|.-+..+ ....+++|-+.+ .|-+| +.++
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhhh
Confidence 3678999985554 4443 2445566689999999866544332 346777777777 55555 4444
No 195
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.45 E-value=0.022 Score=65.72 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCce-EEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 472 IPAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 472 l~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
...+...+..+.. .+.++|||..+-.++..+.+.+...... .+...|..+ +..+++.|....+. .+++.+....
T Consensus 464 ~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~ 539 (654)
T COG1199 464 LAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeecccc
Confidence 3444555554443 3558999999999999999999887653 445555554 55899999988753 7889999999
Q ss_pred cccCccc--CCEEEEecCCCC-c-----------------------------chhhhhhhhhhccCCCCcEEE
Q 005980 550 VGLTLTA--ASTVIFAELSWT-P-----------------------------GDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 550 ~GlnL~~--a~~VI~~d~~wn-p-----------------------------~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
||+|+++ +..||+.-.|+- | ....|++||+.|--+.+.|.+
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 9999975 688999887774 2 123599999999555555444
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.45 E-value=0.013 Score=65.66 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC------CCcEEEEeCCc-chHHHHHHHH
Q 005980 176 PFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD------VWPVLILTPSS-LRLHWAAMIQ 236 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~------~~~~LIv~P~s-l~~qW~~e~~ 236 (666)
++|+.++..++.+ .-++|....|+|||.+...++..+.. ..++++++|+. ......+.+.
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHH
Confidence 7899999999985 46778888999999988777665421 14699999994 4444444443
No 197
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.43 E-value=0.57 Score=54.64 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=48.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
..|-|-|+++|... .+.+++....|+|||.+.+.-++++- ....+|+|+-+ .......+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAAP---LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred HhcCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 35889999999752 34455555599999999887777653 23459999998 5666677777776653
No 198
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.39 E-value=0.069 Score=54.10 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=28.1
Q ss_pred chHHHHHHHHH---HHcCC-CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFA---LQHGG-RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~---~~~~~-~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-+.+.+++..+ +..+. -++|..+.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34455566544 44444 477899999999999888877665
No 199
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.37 E-value=0.013 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=22.3
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++.++|..+.|+|||..|.+++....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 355688999999999999998887654
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.27 E-value=0.028 Score=65.19 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=44.9
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcch
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLR 228 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~ 228 (666)
..|-+-|++++..++..++-++|.+..|+|||.+.-++...+.. ..++++++|+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~A 408 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKA 408 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHH
Confidence 46889999999998875455788889999999887777665543 5678999999643
No 201
>PF13245 AAA_19: Part of AAA domain
Probab=96.25 E-value=0.0098 Score=47.35 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCCc-chHHHHHHH
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPSS-LRLHWAAMI 235 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~s-l~~qW~~e~ 235 (666)
+|...+..++-+++-.++|+|||.+++..+.++.. ..++|+++|+. ...+-.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45545552333455888999999888777665532 56899999994 454443433
No 202
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.22 E-value=0.63 Score=54.28 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=47.8
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
.|-|-|+++|..- .+.+++....|+|||.+.+.-++++- ....+|+|+.+ .......+.+.+.++.
T Consensus 4 ~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 4 GLNDKQREAVAAP---PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred ccCHHHHHHHcCC---CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 4788999999752 34555555599999999887776653 23458999998 5666677777777653
No 203
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.14 E-value=0.05 Score=63.19 Aligned_cols=93 Identities=12% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCc-------eEEEEECCCCHHHHHHHHHHhcCC----CCce
Q 005980 472 IPAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKV-------HCIRIDGGTPPASRQALVTEFQEK----DDVK 539 (666)
Q Consensus 472 l~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~-------~~~~i~G~~~~~~R~~~i~~F~~~----~~~~ 539 (666)
+..+.+.|.++.. .+..+|||..+-..++.+.+.+...|. +.+.+.+... .++..++++|+.. . .
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~--g 583 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGR--G 583 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCC--c
Confidence 3456666665544 467888888888888888887765432 3345555432 5889999999652 3 2
Q ss_pred EEEEec--cccccccCccc--CCEEEEecCCC
Q 005980 540 AAVLSM--KAGGVGLTLTA--ASTVIFAELSW 567 (666)
Q Consensus 540 v~L~st--~a~~~GlnL~~--a~~VI~~d~~w 567 (666)
.+|++. ...+||||+++ +..||+..+|.
T Consensus 584 avL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 584 AVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred eEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 355555 68899999975 89999999887
No 204
>PRK06526 transposase; Provisional
Probab=96.09 E-value=0.017 Score=57.76 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=36.8
Q ss_pred CchHHHHHH---HHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHH
Q 005980 174 LLPFQRDGV---RFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 174 L~p~Q~~~v---~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
+.+-|...+ .|+ ..+.+++|..++|+|||..|.+++.... ...+++++.. .+|..++.
T Consensus 81 ~~~~~~~~l~~~~fi-~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~----~~l~~~l~ 142 (254)
T PRK06526 81 LKRDTIAHLGTLDFV-TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA----AQWVARLA 142 (254)
T ss_pred cchHHHHHHhcCchh-hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH----HHHHHHHH
Confidence 444444433 455 4467899999999999999998877553 3445544332 34555554
No 205
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.07 E-value=0.038 Score=49.89 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=38.4
Q ss_pred EEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCccc--CCEEEEecCCC
Q 005980 513 CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA--ASTVIFAELSW 567 (666)
Q Consensus 513 ~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~--a~~VI~~d~~w 567 (666)
.+.+.|. ...+...+++.|....+ ..+|+++...+||+|+++ +..||+...|+
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~-~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACE-NAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCC-CEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444453 34467899999987653 256777767999999985 78899988775
No 206
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.03 E-value=0.03 Score=63.08 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCCc
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPSS 226 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~s 226 (666)
.++|++|+.-++.+ +-++|...+|+|||.+...++..+.. ..++++++|+.
T Consensus 154 ~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTg 209 (615)
T PRK10875 154 VDWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTG 209 (615)
T ss_pred CHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcH
Confidence 47999999988875 45678888999999988776665421 24688899994
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.98 E-value=0.078 Score=50.87 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=71.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
+++..++|.|||-++.-+++++. ..+++.+|+-..-..-=.++++.|...- ++-+.... ...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l--~vp~~~~~---------------~~~ 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL--GVPFYVAR---------------TES 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH--TEEEEESS---------------TTS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh--ccccchhh---------------cch
Confidence 46778899999999988888763 3667777776544333334444443210 11111100 000
Q ss_pred CCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhH--HHHHHhhhhhhhcceEEEeeccCCCCChHHHHHH
Q 005980 271 NIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQA--KRTAATLPIIKKAQYALLLSGTPALSRPIELFKQ 348 (666)
Q Consensus 271 ~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s--~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~ 348 (666)
..-+.+......+...++++|++|-+.+..+... ...+.+..........+.|+||--+....+....
T Consensus 67 ----------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 67 ----------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp ----------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 0112333444455566899999999987654332 2344444444455677899999755444444333
Q ss_pred HH
Q 005980 349 LE 350 (666)
Q Consensus 349 l~ 350 (666)
..
T Consensus 137 ~~ 138 (196)
T PF00448_consen 137 YE 138 (196)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 208
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.96 E-value=0.021 Score=58.40 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=47.0
Q ss_pred hcCchHHHHHHHH---HHHcCCCeeeecCCCCcHHHHHHHHHHhc-C-CCC-----cEEEEeCC-cchHHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRF---ALQHGGRILLADEMGLGKTIQAIAVATCF-R-DVW-----PVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 172 ~~L~p~Q~~~v~~---~~~~~~~~iLad~~GlGKTi~ala~~~~~-~-~~~-----~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
...||.|.+-.+. .+..|+.+++-.+||+|||+..+..+..+ . ... ++++++++ ++..|=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3469999996554 34567788999999999999988766422 1 122 78888888 5556655666554
No 209
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.96 E-value=0.021 Score=58.40 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=47.0
Q ss_pred hcCchHHHHHHHH---HHHcCCCeeeecCCCCcHHHHHHHHHHhc-C-CCC-----cEEEEeCC-cchHHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRF---ALQHGGRILLADEMGLGKTIQAIAVATCF-R-DVW-----PVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 172 ~~L~p~Q~~~v~~---~~~~~~~~iLad~~GlGKTi~ala~~~~~-~-~~~-----~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
...||.|.+-.+. .+..|+.+++-.+||+|||+..+..+..+ . ... ++++++++ ++..|=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3469999996554 34567788999999999999988766422 1 122 78888888 5556655666554
No 210
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.96 E-value=1.6 Score=50.53 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=46.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.|-|-|+++|.+. .|.+++....|+|||.+.+.-++++-. ...+|+|+.+ .......+.+.+.++
T Consensus 2 ~Ln~~Q~~av~~~---~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV---TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3778899999762 345555556999999998877776532 3459999998 566667777776664
No 211
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.068 Score=55.67 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|||......+++.|+ ..|+..+.|.|||..|.+++..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 368999999999987532 368899999999999999998774
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.084 Score=57.01 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=70.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 265 (666)
++.+++..++|+|||.++..++..+. ...++.+|.-..-...=.+++..|..... +-+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~--vp~----------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG--IPV----------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC--Cce-----------------
Confidence 44567889999999999988877654 34567777644321111133333331100 000
Q ss_pred cCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh----hcceEEEeeccCCCCC
Q 005980 266 SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK----KAQYALLLSGTPALSR 341 (666)
Q Consensus 266 ~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~----~~~~~llLTgTP~~n~ 341 (666)
....+.+.+......+ .++++||||.+-+..... .....+..++. .....++|++|+-.+.
T Consensus 282 ------------~~~~~~~~l~~~l~~~--~~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQL--RDCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------EccCCHHhHHHHHHHh--CCCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 0112233333333332 268999999987654322 22223333322 2355788999986666
Q ss_pred hHHHHHHHHHhC
Q 005980 342 PIELFKQLEALY 353 (666)
Q Consensus 342 ~~el~~~l~~l~ 353 (666)
..+++..+..+.
T Consensus 347 l~~~~~~f~~~~ 358 (424)
T PRK05703 347 LKDIYKHFSRLP 358 (424)
T ss_pred HHHHHHHhCCCC
Confidence 666666655444
No 213
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.13 Score=54.13 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHcCC---CeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 184 FALQHGG---RILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 184 ~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
.+++.|. ..|+..+.|+|||..|..++..+..
T Consensus 37 ~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 37 QAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4444443 4789999999999999999887753
No 214
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.83 E-value=0.048 Score=48.25 Aligned_cols=35 Identities=37% Similarity=0.453 Sum_probs=27.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
++|..++|+|||..+-.++..+. .+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cccccccccccc
Confidence 47788999999999999998874 566666665554
No 215
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.67 E-value=1.8 Score=50.63 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=44.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.|-|-|+++|... .+.+++-...|+|||.+.+.-+.++-. ...+|+++-+ .......+.+.+.++
T Consensus 4 ~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT---EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC---CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5889999999752 344555555999999998877766532 2458888887 445555566665554
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.63 E-value=0.046 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.4
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..++|..+.|+|||-.+.+++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999998877766654
No 217
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.62 E-value=0.05 Score=61.98 Aligned_cols=66 Identities=20% Similarity=0.086 Sum_probs=50.5
Q ss_pred hcCchHHHHHHHHHHH-cCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQ-HGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~-~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
..|-.-|++|+..++. .....|++. +|+|||-+...++..+. ..+++|+.+=+ +.++|-.-.+..+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GM-PGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGM-PGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecC-CCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc
Confidence 4788999999998774 355556666 99999999888888764 46789999888 6788876666554
No 218
>PRK08727 hypothetical protein; Validated
Probab=95.47 E-value=0.096 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|..++|+|||-.+.+++....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999988777766544
No 219
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.46 E-value=0.075 Score=62.86 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=74.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.|-+-|+++|..++..++-++|....|+|||.+.-++...+. ....++.++|+.... ..+..-.++...
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA---~~L~e~tGi~a~------- 415 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA---ENLEGGSGIASR------- 415 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH---HHHhhccCcchh-------
Confidence 589999999998887444567888899999987555544443 356788899986432 222222221110
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHH--HHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcce
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKL--QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQY 329 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~--~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~ 329 (666)
|...+... .........++||||||-.+... ....++..+....-
T Consensus 416 ------------------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~~a~~~ga 462 (988)
T PRK13889 416 ------------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLSHAADAGA 462 (988)
T ss_pred ------------------------------hHHHHHhhhcccccccccCcEEEEECcccCCHH---HHHHHHHhhhhCCC
Confidence 11111100 00001125689999999988554 33334443335677
Q ss_pred EEEeeccCCC
Q 005980 330 ALLLSGTPAL 339 (666)
Q Consensus 330 ~llLTgTP~~ 339 (666)
+++|.|=|-|
T Consensus 463 rvVLVGD~~Q 472 (988)
T PRK13889 463 KVVLVGDPQQ 472 (988)
T ss_pred EEEEECCHHH
Confidence 8899998744
No 220
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.41 E-value=0.31 Score=51.16 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 265 (666)
++-+.|..+||.|||.+..-+|+.+. ...++-||+-.+-.--=.++++.|..+-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp-------------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP-------------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc--------------------
Confidence 56677889999999988766666543 4556777766554433344555554211000
Q ss_pred cCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCcc-ccCCh-hHHHHHHhhhhhhhcceEEEeeccCCCCChH
Q 005980 266 SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESH-FLKNA-QAKRTAATLPIIKKAQYALLLSGTPALSRPI 343 (666)
Q Consensus 266 ~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH-~~kn~-~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~ 343 (666)
..++.+...+......+. ++|+|.+|=+- ..++. .....+++..........+.||+|-=..++.
T Consensus 263 -----------~~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 263 -----------LEVVYSPKELAEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred -----------eEEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHH
Confidence 123556666666555553 45999999664 34443 2334444444433456679999998888888
Q ss_pred HHHHHHHHhCCC
Q 005980 344 ELFKQLEALYPD 355 (666)
Q Consensus 344 el~~~l~~l~p~ 355 (666)
+++..+..+..+
T Consensus 330 ei~~~f~~~~i~ 341 (407)
T COG1419 330 EIIKQFSLFPID 341 (407)
T ss_pred HHHHHhccCCcc
Confidence 888888777653
No 221
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.38 E-value=0.074 Score=48.07 Aligned_cols=68 Identities=13% Similarity=0.324 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCc----eEEEEECCCCHHHHHHHHHHhcCCCC-ceEEEEeccc--cccccCccc--CCEEEEecCCC
Q 005980 499 LDAIHQLFLKKKV----HCIRIDGGTPPASRQALVTEFQEKDD-VKAAVLSMKA--GGVGLTLTA--ASTVIFAELSW 567 (666)
Q Consensus 499 ~~~l~~~L~~~g~----~~~~i~G~~~~~~R~~~i~~F~~~~~-~~v~L~st~a--~~~GlnL~~--a~~VI~~d~~w 567 (666)
++.+.+.+...+. ..+.+.+..+ .+..++++.|+...+ ...+|+++.. .+||||+++ ++.||+..+|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4444455554432 3345555443 355789999987542 0134555444 899999985 78999988775
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.43 Score=50.28 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCc----chHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSS----LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIV 264 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~s----l~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 264 (666)
+.+.|..++|+|||.++..++..+.. ..+++++.-.. .+.||..-.. -.+++ +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae-~lgip-----v---------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK-TIGFE-----V---------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh-hcCCc-----E----------------
Confidence 45678888999999998888876643 44677776532 3455543211 11111 0
Q ss_pred ecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc-CCccEEEEcCccccCChhHHHHHHhhhhhhh---cceEEEeeccCCCC
Q 005980 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMS-SNFKIVIADESHFLKNAQAKRTAATLPIIKK---AQYALLLSGTPALS 340 (666)
Q Consensus 265 ~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~---~~~~llLTgTP~~n 340 (666)
+.+.+.+.+......+.. .++|+||+|-+=+..+.. .....+..++.. ....+.|+||--.+
T Consensus 300 -------------~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~-~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 300 -------------IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -------------EecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCH-HHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 112345556555554443 369999999886644322 222223332221 22335577775433
Q ss_pred ChHHHH
Q 005980 341 RPIELF 346 (666)
Q Consensus 341 ~~~el~ 346 (666)
...+..
T Consensus 366 d~~~i~ 371 (436)
T PRK11889 366 DMIEII 371 (436)
T ss_pred HHHHHH
Confidence 333333
No 223
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.30 E-value=0.14 Score=54.13 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=72.5
Q ss_pred HHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecC
Q 005980 179 RDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253 (666)
Q Consensus 179 ~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~ 253 (666)
...++.++.. |.-+++..++|.|||..++.++..+.. ..++|.|.-..-..|......+ +++...++
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~r-lg~~~~~l------- 139 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADR-LGISTENL------- 139 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHH-cCCCcccE-------
Confidence 3556666532 334688999999999999988776543 4688888766545555444333 22221111
Q ss_pred CCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh--------HH---HHHHhhh
Q 005980 254 GGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ--------AK---RTAATLP 322 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~--------s~---~~~~~~~ 322 (666)
.+.....+......+...+.++||+|+.|.+.... ++ ....+..
T Consensus 140 -------------------------~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~ 194 (372)
T cd01121 140 -------------------------YLLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMR 194 (372)
T ss_pred -------------------------EEEccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHH
Confidence 11111122333334455689999999999874221 11 1233445
Q ss_pred hhhhcceEEEeeccC
Q 005980 323 IIKKAQYALLLSGTP 337 (666)
Q Consensus 323 l~~~~~~~llLTgTP 337 (666)
+++...-.++++|-.
T Consensus 195 lak~~~itvilvghv 209 (372)
T cd01121 195 FAKERNIPIFIVGHV 209 (372)
T ss_pred HHHHcCCeEEEEeec
Confidence 555556667888754
No 224
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.25 E-value=0.082 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..++|..++|+|||..|-+++..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999998887765
No 225
>PRK14974 cell division protein FtsY; Provisional
Probab=95.25 E-value=0.22 Score=51.94 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEeCCc----chHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDV-WPVLILTPSS----LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIV 264 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~P~s----l~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 264 (666)
.-+++...+|+|||.++..++..+... .+++++.... ...||..-... ++++ +.... .+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~-lgv~-----v~~~~-~g~d------- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAER-LGVK-----VIKHK-YGAD------- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHH-cCCc-----eeccc-CCCC-------
Confidence 346788999999999988888777544 4676666542 34566443332 3322 11000 0000
Q ss_pred ecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHH--HHHHhhhhhhhcceEEEeeccCC
Q 005980 265 SSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAK--RTAATLPIIKKAQYALLLSGTPA 338 (666)
Q Consensus 265 ~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~--~~~~~~~l~~~~~~~llLTgTP~ 338 (666)
....+..........++++||+|.+++..+.... ..+.+...+......+.++||.-
T Consensus 207 -----------------p~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 207 -----------------PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred -----------------HHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 0011112222223346899999999998654322 22223322223344577788763
No 226
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.24 E-value=0.041 Score=62.68 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=54.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCc-chHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSS-LRLHWAAMIQQ 237 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~s-l~~qW~~e~~~ 237 (666)
..|-+.|+++|..++......++-.++|+|||.++.+++..+ ....++|+++|+. .+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 568899999999998765678889999999999888877654 3456899999994 57777777765
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.24 E-value=0.27 Score=48.81 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHH------c-CCCeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEeCCcchHHHHHHHHH
Q 005980 176 PFQRDGVRFALQ------H-GGRILLADEMGLGKTIQAIAVATCFRDV-WPVLILTPSSLRLHWAAMIQQ 237 (666)
Q Consensus 176 p~Q~~~v~~~~~------~-~~~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~P~sl~~qW~~e~~~ 237 (666)
+.|..++..+.+ . ..+++|..++|+|||..+.+++..+... .+++++ + +..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t---~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-T---VADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-E---HHHHHHHHHH
Confidence 456666655442 1 1468999999999999999998877543 445544 2 3555555554
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.18 Score=52.05 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=34.9
Q ss_pred hcCchHHHHHHHHHHHc--CC----CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 172 SKLLPFQRDGVRFALQH--GG----RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~--~~----~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+||+|......+... .+ ..|+..+.|+||+..|.+++..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 46899999999877532 22 468999999999999999988764
No 229
>CHL00181 cbbX CbbX; Provisional
Probab=95.16 E-value=0.075 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.++|..++|+|||..|-+++..+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 230
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.05 E-value=0.2 Score=52.54 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFALQHGG--RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++...+.+..++..+. .+++..+.|+|||..|.+++..+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455666666666554 689999999999999999988764
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.03 E-value=0.087 Score=52.79 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=36.0
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~ 235 (666)
++.+++|..++|.|||..|.|++..+.. ..+++++.-+.++.+++..+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 5778999999999999999998887654 45677776556665554443
No 232
>PRK06893 DNA replication initiation factor; Validated
Probab=94.98 E-value=0.09 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.++|..++|+|||-.+.+++..+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999888887765
No 233
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.97 E-value=0.086 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++++..++|+|||..|.+++..+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999988777653
No 234
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.21 Score=54.10 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 178 QRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 178 Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
-...+..++..+. ..|+..+.|.|||..|..++..+..
T Consensus 26 iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 26 AIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3344555555443 2599999999999999999998753
No 235
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.86 E-value=0.14 Score=60.98 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=78.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
..|-+-|+++|..+...++-++|....|+|||.+.-++...+. ...+++.++|+.-. ...+.+-+|++..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkA---A~~L~e~~Gi~a~------ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKA---AEGLEKEAGIQSR------ 450 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHH---HHHHHHhhCCCee------
Confidence 3689999999998765444467778899999988777766553 35678889998543 2344444443321
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH-HH-HHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcc
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL-KL-QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ 328 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~-~~-~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~ 328 (666)
|...+. .. ...-....-++||||||..+... ....+...+..+.
T Consensus 451 -------------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~---~m~~Ll~~~~~~g 496 (1102)
T PRK13826 451 -------------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVASR---QMALFVEAVTRAG 496 (1102)
T ss_pred -------------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCHH---HHHHHHHHHHhcC
Confidence 111110 00 00000113569999999998553 3334444444567
Q ss_pred eEEEeeccCCCC
Q 005980 329 YALLLSGTPALS 340 (666)
Q Consensus 329 ~~llLTgTP~~n 340 (666)
-+++|-|=|-+-
T Consensus 497 arvVLVGD~~QL 508 (1102)
T PRK13826 497 AKLVLVGDPEQL 508 (1102)
T ss_pred CEEEEECCHHHc
Confidence 789999988543
No 236
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.84 E-value=0.75 Score=52.45 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 179 RDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 179 ~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++.+..++..+. ..||..+.|+|||..+..++..+.
T Consensus 25 v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 25 VRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444454332 358999999999999999998775
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.81 E-value=0.18 Score=47.74 Aligned_cols=47 Identities=21% Similarity=0.073 Sum_probs=35.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
.++..++|+|||..++.++... +...+++++....-..+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 5788999999999999876644 5677899998876666666555544
No 238
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.095 Score=55.56 Aligned_cols=46 Identities=28% Similarity=0.274 Sum_probs=37.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
+.+|..+.|.|||..+-+++.... ..+.=|.|++|...|.-|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~--atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG--ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc--ceEeeccHHHhhhhccChHHHH
Confidence 679999999999999999888654 5566778889998887776554
No 239
>PF13173 AAA_14: AAA domain
Probab=94.74 E-value=0.25 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.-++|..+.|+|||..+..++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468889999999999888877654
No 240
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.1 Score=48.98 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCC
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (666)
++..+|.+|||..-|-.+..+.. ..+++|..|..-. .++ ...+.+.. |..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~---------R~~-----~~~V~Sr~-G~~-------------- 58 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT---------RYG-----VGKVSSRI-GLS-------------- 58 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc---------ccc-----cceeeecc-CCc--------------
Confidence 56778999999988877776643 5678888886211 110 00111111 111
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHh-cCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeecc
Q 005980 272 IPLDGLFNIISYDVVLKLQNILM-SSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGT 336 (666)
Q Consensus 272 ~~~~~~v~I~sy~~l~~~~~~l~-~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgT 336 (666)
...+.|-+-..+........ +...++|.+||||.+.. .....+..++..-...+++.|.
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 01123333344444433321 22368999999999965 3455555555444677777775
No 241
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.55 E-value=0.11 Score=52.02 Aligned_cols=38 Identities=26% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHH---Hc--CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFAL---QH--GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~---~~--~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+|...|.-+. .+ ....++-.+.|+|||-+|+++++.+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 5777776543 22 33468899999999999999999875
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.48 E-value=0.72 Score=42.18 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=25.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
.++..++|+|||..+..++.... ...+++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46778899999999988877653 35677777655
No 243
>PRK05642 DNA replication initiation factor; Validated
Probab=94.46 E-value=0.16 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..++|..+.|+|||--+-+++..+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999998776665543
No 244
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=94.45 E-value=0.63 Score=49.97 Aligned_cols=127 Identities=12% Similarity=0.065 Sum_probs=93.1
Q ss_pred cccHHHHHHH-HHHHH--HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 469 EAKIPAVLDY-LETVI--EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 469 ~~Kl~~l~~~-l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
.++++...+. +..+. ....++|||..+--..-.|.++|++.++.+..++--++..+-.++...|..|.. .++|.+-
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~-~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK-PILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc-eEEEEEh
Confidence 3456655553 33333 245789999988777778999999999999999999999999999999999983 5666664
Q ss_pred ccc-ccccCcccCCEEEEecCCCCcchhhhhhhhhhccCC----CCcEEEEEEEeC
Q 005980 546 KAG-GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ----VSSVNVYYLLAN 596 (666)
Q Consensus 546 ~a~-~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq----~~~V~v~~lv~~ 596 (666)
++- =.=..+.++.+||||.||-+|.-|...+.-+..-.+ .....+.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 442 123456789999999999999999888866554433 234455555554
No 245
>PRK04195 replication factor C large subunit; Provisional
Probab=94.43 E-value=0.37 Score=53.35 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=26.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
...+||..+.|+|||..|-+++..+. ++++.+-++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--WEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEEccc
Confidence 34689999999999999999988764 445444433
No 246
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.42 E-value=0.032 Score=66.78 Aligned_cols=179 Identities=27% Similarity=0.339 Sum_probs=99.5
Q ss_pred hcCchHHHHHHHHHH-HcCCCeeeecCCCCc--HHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhcCCCCc
Q 005980 172 SKLLPFQRDGVRFAL-QHGGRILLADEMGLG--KTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~-~~~~~~iLad~~GlG--KTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~ 245 (666)
..+.++|........ ....+..+++..|.| ||+.+..+..... ...+.++++|..+..+|..+...++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 162 (866)
T COG0553 83 FILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFNIRLAV 162 (866)
T ss_pred cccCcchhhhhhhhhhhhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhccccchh
Confidence 456777777665433 333447889999999 8998776665542 3567899999999999999988775432111
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHH----HHHHhcCCc---cEEEEcCccccCChh-----
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKL----QNILMSSNF---KIVIADESHFLKNAQ----- 313 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~----~~~l~~~~~---~~vIiDEaH~~kn~~----- 313 (666)
.. ............. .........++.+.+..... ...+....| +++++||+|+..+..
T Consensus 163 ~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (866)
T COG0553 163 LD---KEGLRYLLKQYDA------YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKL 233 (866)
T ss_pred hh---hhhhhhhhhhhcc------cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccc
Confidence 10 0000000000000 00000000023444444332 122333345 899999999997742
Q ss_pred ----HHHHHHhhhhhhhcc------eEEEeeccCCCCChHHHHHHHHHhCCCCCCC
Q 005980 314 ----AKRTAATLPIIKKAQ------YALLLSGTPALSRPIELFKQLEALYPDVYKN 359 (666)
Q Consensus 314 ----s~~~~~~~~l~~~~~------~~llLTgTP~~n~~~el~~~l~~l~p~~~~~ 359 (666)
...+........+.. ....+++||......+++....+..+..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 234 APLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 233333333322222 2347899999888888777666666655544
No 247
>PRK08181 transposase; Validated
Probab=94.41 E-value=0.28 Score=49.52 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=34.8
Q ss_pred cCchHHHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 173 KLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 173 ~L~p~Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
.+-+-|..++..+ +..+.+++|..++|+|||..+.+++..... ..+++.+.
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 3455676666432 345778999999999999999888765533 34554443
No 248
>PRK08116 hypothetical protein; Validated
Probab=94.41 E-value=0.32 Score=49.17 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRL 229 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~ 229 (666)
+.+++|..++|+|||..|.+++..+.. ..+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 345899999999999999999887743 45555554334443
No 249
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=0.42 Score=49.91 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHcC----CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 174 LLPFQRDGVRFALQHG----GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~----~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+||||...-+.+.... ...|+..+.|.|||..|..++..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5889888888776532 2457899999999999999998764
No 250
>PHA02533 17 large terminase protein; Provisional
Probab=94.36 E-value=0.71 Score=51.41 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh---cCCCCcEEEEeCCc-chHHHHHHHHHHhc-CCCC-c
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC---FRDVWPVLILTPSS-LRLHWAAMIQQWLN-IPPS-E 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~---~~~~~~~LIv~P~s-l~~qW~~e~~~~~~-~~~~-~ 245 (666)
..|.|+|++.+..+..+. ..++.-.=..|||..+.+++.+ ......+++++|+. -...--+.++..+. .|.. .
T Consensus 58 f~L~p~Q~~i~~~~~~~R-~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNR-FNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred cCCcHHHHHHHHHHhcCe-EEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 568999999998775433 3345445889999887755432 24455788889962 11111133333221 1110 0
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~ 325 (666)
..+. ..+.. .+.- ..+..+.+.+-+ .+......++++|+||+|.+++.. ....++.+.+.
T Consensus 137 ~~i~-----~~~~~--~I~l-------~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~la 196 (534)
T PHA02533 137 PGIV-----EWNKG--SIEL-------ENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVIS 196 (534)
T ss_pred ccee-----ecCcc--EEEe-------CCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHH
Confidence 0000 00000 0100 111222222211 122345577899999999998753 33344555443
Q ss_pred hc-ceEEEeeccC
Q 005980 326 KA-QYALLLSGTP 337 (666)
Q Consensus 326 ~~-~~~llLTgTP 337 (666)
.. ..++....||
T Consensus 197 sg~~~r~iiiSTp 209 (534)
T PHA02533 197 SGRSSKIIITSTP 209 (534)
T ss_pred cCCCceEEEEECC
Confidence 32 2457778888
No 251
>PTZ00293 thymidine kinase; Provisional
Probab=94.27 E-value=0.23 Score=47.72 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=26.1
Q ss_pred eeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 193 LLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
++..+||+|||...|-.+..+. ...+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCceEEEEec
Confidence 5678899999988887776553 46689999886
No 252
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.17 E-value=0.35 Score=52.23 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=27.5
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPS 225 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~ 225 (666)
.-++++..+|+|||.++..++.++.. ..++++|+..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 34678899999999999988887754 3566666554
No 253
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.28 Score=54.50 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=48.3
Q ss_pred cCchHHHHHHHHHHHc-----------CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHh
Q 005980 173 KLLPFQRDGVRFALQH-----------GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~-----------~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
......++++.|.+.+ ..++||..++|+|||+.|-+++...+ .+++-|-..+++..|.-|.++-.
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~l~sk~vGesek~i 324 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSELLSKWVGESEKNI 324 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHHHhccccchHHHHH
Confidence 3555667777766532 44789999999999999999988654 66666655588888887777653
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.14 E-value=0.39 Score=47.04 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHcCC-CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc
Q 005980 184 FALQHGG-RILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227 (666)
Q Consensus 184 ~~~~~~~-~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl 227 (666)
+.++.+. .+.+..++|+|||+..=++...+.+...+.|+.|+..
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~ 89 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPT 89 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcc
Confidence 5555444 5677889999999998877777766666777877744
No 255
>PLN03025 replication factor C subunit; Provisional
Probab=94.08 E-value=0.51 Score=49.14 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.+..++..+ ...|+..+.|+|||-.|.+++..+.
T Consensus 21 ~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 21 AVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 334444444432 3579999999999999999988763
No 256
>PRK06921 hypothetical protein; Provisional
Probab=94.02 E-value=0.31 Score=49.25 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCC--CcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDV--WPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~--~~~LIv~ 223 (666)
+.+++|..++|+|||..+.+++..+... ..++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5678999999999999999988876543 3444444
No 257
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.01 E-value=0.095 Score=60.87 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=51.7
Q ss_pred cCchHHHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCC-cchHHHHHHHHHH
Q 005980 173 KLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 173 ~L~p~Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
.+||.|++....+ ++.++.+++-.+||+|||+.+|+.+..+.. ..+++..+.+ +-+.|-.+|+++-
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3599999988765 456888999999999999998876654321 2467777888 6799999999983
No 258
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.47 Score=53.34 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+=...+..++..+. ..|+.++.|.|||..|.+++..+.
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33455555555442 459999999999999999998875
No 259
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=0.54 Score=48.77 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHH---HcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 174 LLPFQRDGVRFAL---QHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 174 L~p~Q~~~v~~~~---~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|||......+. ..| ...|+..+.|.||+..|.+++..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 5788887776654 222 2457899999999999999998764
No 260
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=0.51 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+..+.|.|||..|.+++..+.
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 261
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.89 E-value=0.13 Score=52.61 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcC-CCeeeecCCCCcHHHHHHHHHHh
Q 005980 176 PFQRDGVRFALQHG-GRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 176 p~Q~~~v~~~~~~~-~~~iLad~~GlGKTi~ala~~~~ 212 (666)
-+|.-|+..++.-. +=+.|...-|+|||+-|+|+..+
T Consensus 231 ~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 231 AEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred HHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHH
Confidence 37999998888643 23567888999999999887664
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.82 E-value=0.49 Score=46.57 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=25.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
+..++|..+.|+|||..|.+++.... ...++.++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45689999999999998888877552 233444443
No 263
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.68 E-value=1.1 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+..+.|.||+..|.+++..+.
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 358999999999999999998774
No 264
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.84 Score=47.83 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=87.0
Q ss_pred HHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 179 RDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 179 ~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
..-++..+-. |.-++++.++|.|||..-+-+++.+...+++|.|+=-.-..||+-...+. +++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL-~~~~----------- 146 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRL-GLPT----------- 146 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHh-CCCc-----------
Confidence 3445555531 23358899999999988888888776666999999998899998887765 2221
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh--------H---HHHHHhhhh
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ--------A---KRTAATLPI 323 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~--------s---~~~~~~~~l 323 (666)
..+.+.....+......+...+++++|+|=.|.+-++. + ..+..+.++
T Consensus 147 ---------------------~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 147 ---------------------NNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred ---------------------cceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 12345555566666677777899999999999885532 1 245566666
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
++...-.+++.|--
T Consensus 206 AK~~~i~~fiVGHV 219 (456)
T COG1066 206 AKTKNIAIFIVGHV 219 (456)
T ss_pred HHHcCCeEEEEEEE
Confidence 65555556666643
No 265
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.62 E-value=0.69 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 182 VRFALQH--GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 182 v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..+++. -.+.||..++|.|||-.|-.++....
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 4566653 33689999999999998887777654
No 266
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.61 E-value=0.22 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|++.++|.|||..+.+++..+.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh
Confidence 679999999999999999998764
No 267
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.3 Score=50.27 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=37.5
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHh
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
++-..|++|-+++|+|||..|-+++.... .+++=|-=+.+.+.|--|-++.+
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcC--CCcceeeccccchhhHHHHHHHH
Confidence 34466889999999999999999988653 34443444456668877776654
No 268
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.59 E-value=0.98 Score=46.93 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHcCC--Ceee-ecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 174 LLPFQRDGVRFALQHGG--RILL-ADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~--~~iL-ad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
..++..+.+..++..+. ++++ ..+.|+|||..+-+++..+. .+++.+.+.
T Consensus 25 ~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~~~~i~~~ 77 (316)
T PHA02544 25 LPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AEVLFVNGS 77 (316)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--ccceEeccC
Confidence 34445555555554432 3455 89999999999888877653 344444443
No 269
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.56 E-value=0.31 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=21.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.||..++|.|||..+-+++..+.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 45778999999999999988877653
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.54 E-value=0.48 Score=50.00 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=30.2
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHhc--CCC-CcEEEEeCCcc
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATCF--RDV-WPVLILTPSSL 227 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~-~~~LIv~P~sl 227 (666)
+.+++-++|..++|+|||.++..++..+ ... .++.+|+....
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3446678899999999999999888764 222 46777765544
No 271
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=0.19 Score=54.45 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=27.4
Q ss_pred EEEEECCC-CHHHHHHHHHHhcCCCCceEEEEeccccccccCc
Q 005980 513 CIRIDGGT-PPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTL 554 (666)
Q Consensus 513 ~~~i~G~~-~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL 554 (666)
+...+|+. ..++-+.+++.....++++.++.+.+.+.+|.|+
T Consensus 304 ~~i~n~~ek~~~e~~lllnsled~dnpir~if~vd~lnegwdv 346 (812)
T COG3421 304 VQINNNNEKELEESMLLLNSLEDRDNPIRVIFSVDKLNEGWDV 346 (812)
T ss_pred heecCCCccchHHHHHHHhhhhhcCCCeEEEEEeecccccchh
Confidence 33344432 2345566677777767777788888888888764
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.50 E-value=0.55 Score=48.86 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHH-------HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 174 LLPFQRDGVRFAL-------QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 174 L~p~Q~~~v~~~~-------~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.+..+..++..+. ..+.+++|..++|+|||..+.|++..+...+..++..+.
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 4455555555332 135688999999999999999998877544443344443
No 273
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.30 E-value=0.28 Score=53.90 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s 226 (666)
..|+||..++|+|||..|=+++.... .|++.+-+..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 56799999999999999988888764 5666665543
No 274
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.27 E-value=0.33 Score=57.40 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.||..++|.|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988887653
No 275
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.22 E-value=0.32 Score=52.14 Aligned_cols=38 Identities=32% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
..+++|..++|+|||..|-+++..+. .+++.+..+.+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~--~~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC--CCEEEeehHHHh
Confidence 45789999999999999999888654 455555444443
No 276
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=0.54 Score=53.23 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCC---eeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGGR---ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~---~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-...+..++..+.- .|+..+.|+|||..|..++..+.
T Consensus 23 ~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 23 HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 344455566664432 48999999999999999988775
No 277
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.19 E-value=0.7 Score=50.40 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=71.5
Q ss_pred HHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 180 DGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 180 ~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
.+++.++.. |.-++|..++|.|||..++.++.... ...++|.+.-..-..|......+ ++....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~r-lg~~~~~l-------- 137 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAER-LGLPSDNL-------- 137 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHH-cCCChhcE--------
Confidence 556666642 22357899999999999988877653 45688888876556665544443 22211111
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCCh------h--HH---HHHHhhhh
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNA------Q--AK---RTAATLPI 323 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~------~--s~---~~~~~~~l 323 (666)
.+..-..+......+...+.++||+|+.+.+... + ++ ....+..+
T Consensus 138 ------------------------~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 138 ------------------------YLLAETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred ------------------------EEeCCCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 1111111223333444568899999999977431 1 11 12234444
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
++...-.+++++-.
T Consensus 194 ak~~~itvilv~hv 207 (446)
T PRK11823 194 AKQRGIAVFLVGHV 207 (446)
T ss_pred HHHcCCEEEEEeec
Confidence 44555567777643
No 278
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.12 E-value=0.79 Score=51.82 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhc-C--CCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 178 QRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCF-R--DVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 178 Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~-~--~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
|.+.+..+ +..+..+++-.+||+|||+..+..+..+ . ...++||++|+ .|..|+.+++....
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 55544443 4456667777789999999877655332 2 36899999999 88999998877665
No 279
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.12 E-value=0.41 Score=51.26 Aligned_cols=40 Identities=28% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~q 230 (666)
+.+++|..++|+|||..|-+++.... .+++-+.++.+...
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~--~~fi~i~~s~l~~k 218 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT--ATFIRVVGSEFVQK 218 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHHHH
Confidence 56899999999999999988887653 45555555444333
No 280
>PRK12377 putative replication protein; Provisional
Probab=93.10 E-value=0.74 Score=45.83 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEeCCcchH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDV-WPVLILTPSSLRL 229 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~P~sl~~ 229 (666)
..+++|..++|+|||..|.|++..+... .+++++.-..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 3568999999999999999998877543 4454443334444
No 281
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.08 E-value=0.38 Score=52.00 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD---VWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~ 223 (666)
.++|.+++|+|||..+-+++..+.. ...++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4689999999999998888876643 24455553
No 282
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.93 Score=50.94 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-...+..++..+. ..||..+.|+|||..|..++..+.
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33445555555432 358999999999999999998875
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.01 E-value=0.92 Score=51.23 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-...+..++..+. ..||..+.|+|||..|..++..+.
T Consensus 31 ~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 31 AMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 33444444454432 479999999999999999998774
No 284
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.97 E-value=1 Score=47.89 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHc------CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 174 LLPFQRDGVRFALQH------GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~------~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
=|..|.+.+...+.. ++.++|..+.|+|||.++-+++..+
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 366777777655532 3568999999999999988887765
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=1.5 Score=46.94 Aligned_cols=121 Identities=12% Similarity=0.199 Sum_probs=65.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCCc--chHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecC
Q 005980 192 ILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPSS--LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSN 267 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~s--l~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 267 (666)
+++..++|+|||.++..++..+ ....+++++.=-. ....| .+..|......
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e--QLk~yAe~lgv----------------------- 280 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE--QLKRYADTMGM----------------------- 280 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH--HHHHHHHhcCC-----------------------
Confidence 6688999999999999888654 3345666665333 22333 44444321100
Q ss_pred CCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh------hcceEEEeeccCCCCC
Q 005980 268 TKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK------KAQYALLLSGTPALSR 341 (666)
Q Consensus 268 ~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~------~~~~~llLTgTP~~n~ 341 (666)
-+.....+......+...++++||+|=+-+..... .....+..++. .....+.|+||--.+.
T Consensus 281 -----------p~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 281 -----------PFYPVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH 348 (432)
T ss_pred -----------CeeehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH
Confidence 01111122333334445689999999876653221 23333333221 2245688999975544
Q ss_pred hHHHHHHH
Q 005980 342 PIELFKQL 349 (666)
Q Consensus 342 ~~el~~~l 349 (666)
..+.....
T Consensus 349 ~~~~~~~f 356 (432)
T PRK12724 349 TLTVLKAY 356 (432)
T ss_pred HHHHHHHh
Confidence 44444433
No 286
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.89 E-value=0.48 Score=56.14 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.||..++|.|||..+-+++..+.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhh
Confidence 44789999999999999988888663
No 287
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.88 E-value=0.36 Score=51.26 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHH---HHHHHHHhcCC
Q 005980 174 LLPFQRDGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHW---AAMIQQWLNIP 242 (666)
Q Consensus 174 L~p~Q~~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW---~~e~~~~~~~~ 242 (666)
|-+-|+.++..+++ .+..+++...-|+|||...=++...++. ..++++++|+.+...- -.-++.+++++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 56779999887742 3667789999999999998888877765 4578899998553221 24456666544
No 288
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.86 E-value=0.53 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCCcchHHHH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPSSLRLHWA 232 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~sl~~qW~ 232 (666)
.++|..++|+|||..+-+++..+.. ..+++.+.+..+.....
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 4789999999999888777775432 34455554444443333
No 289
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.86 E-value=0.74 Score=51.03 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=26.0
Q ss_pred HHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 179 RDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 179 ~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...+..++..+ ...|+..+.|+|||..|..++..+.
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444444432 2358999999999999999998875
No 290
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.79 E-value=0.73 Score=53.30 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=76.1
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHH----HHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQL----FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~----L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 540 (666)
..++++|-.+..-.+.....+|.+++|.++....+..+.+. +...|+++..++|+++..+|.++++...+++ +.+
T Consensus 289 ~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~I 367 (681)
T PRK10917 289 GDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADI 367 (681)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCE
Confidence 45788898876666655667899999999988776655554 4455899999999999999999999998876 345
Q ss_pred EEEeccccccccCcccCCEEEEecCC
Q 005980 541 AVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 541 ~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
++.+.......+.+.....||+=+-+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EEchHHHhcccchhcccceEEEechh
Confidence 55554555666778888888776554
No 291
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.91 Score=49.80 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
|-...+..++..+. ..|+..++|+|||..|-+++..+.
T Consensus 21 ~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 21 HVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44445555555432 358999999999999999988764
No 292
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.75 E-value=1.7 Score=43.81 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCC----cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPS----SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTI 263 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~----sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 263 (666)
+..+.+..+.|+|||..+..++..+.. ..++.++.-. ..+.||...... .+++ +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~-----~--------------- 133 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IGFE-----V--------------- 133 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh-cCce-----E---------------
Confidence 456788888999999987777666543 4566666553 245566532221 1111 0
Q ss_pred EecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc-CCccEEEEcCccccCChh--HHHHHHhhhhhhhcceEEEeeccCCCC
Q 005980 264 VSSNTKRNIPLDGLFNIISYDVVLKLQNILMS-SNFKIVIADESHFLKNAQ--AKRTAATLPIIKKAQYALLLSGTPALS 340 (666)
Q Consensus 264 ~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~~~~~~llLTgTP~~n 340 (666)
+...+.+.+......+.. .++++||+|-+=+..... -.....+..........+.|+||--.+
T Consensus 134 --------------~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 134 --------------IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------------EecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 011234444444444433 479999999986653221 122222332222223457788886444
Q ss_pred ChHHHHH
Q 005980 341 RPIELFK 347 (666)
Q Consensus 341 ~~~el~~ 347 (666)
...+...
T Consensus 200 d~~~~~~ 206 (270)
T PRK06731 200 DMIEIIT 206 (270)
T ss_pred HHHHHHH
Confidence 4444433
No 293
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.73 E-value=0.23 Score=46.66 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred eeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 193 LLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
++..+|++|||...+..+..+. ...+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4567899999999998877653 35678888886
No 294
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=1.3 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+..+.|.||+..|.+++..+.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999774
No 295
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.55 E-value=0.56 Score=51.46 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCC---CcEEEEeCCcchH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDV---WPVLILTPSSLRL 229 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~---~~~LIv~P~sl~~ 229 (666)
.++|.+++|+|||..+-+++..+... ..++.+....+..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~ 191 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 191 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 47899999999999988888776432 2344443334443
No 296
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.50 E-value=0.75 Score=53.09 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHHHc------CCCe-eeecCCCCcHHHHHHHHHHhc
Q 005980 174 LLPFQRDGVRFALQH------GGRI-LLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~------~~~~-iLad~~GlGKTi~ala~~~~~ 213 (666)
=|.-|.+.+...+.. .+++ +|...+|+|||.++-.++..+
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 366677777655431 2244 489999999999998887765
No 297
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.43 E-value=1.5 Score=45.68 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHcCC----CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 174 LLPFQRDGVRFALQHGG----RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~----~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+||+|......+....+ ..|+..+.|.|||..|..++..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 58899888887764422 468999999999999999988764
No 298
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.38 E-value=2.4 Score=43.98 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=26.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
-+.+..+.|+|||.++..++..+.. .++++++.-
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3557789999999999888887754 456777753
No 299
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.38 E-value=0.75 Score=44.58 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.9
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+|+..++|+|||-.|-.++..+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 589999999999998888887765
No 300
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.33 E-value=2.1 Score=46.41 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=38.0
Q ss_pred hcCchHHHHHHHHHHHcCCC-eeeecCCCCcHHHHHHHHHHhcCCCCc
Q 005980 172 SKLLPFQRDGVRFALQHGGR-ILLADEMGLGKTIQAIAVATCFRDVWP 218 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~-~iLad~~GlGKTi~ala~~~~~~~~~~ 218 (666)
..+.|+|...+..++.+..| +|+..+||+|||.+.-+++..+.....
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 35689999999999887655 567899999999999998888765443
No 301
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.31 E-value=1.3 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.9
Q ss_pred cCchHHHHHHHHHHH---cC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQ---HG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~---~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|+|......+.+ ++ ...++..+.|+||+..|.+++..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 478998888876653 22 2468999999999999999988764
No 302
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.30 E-value=0.59 Score=57.88 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=42.0
Q ss_pred hhhhcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhc---C--CCCcEEEEeCCcc
Q 005980 169 HIESKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCF---R--DVWPVLILTPSSL 227 (666)
Q Consensus 169 ~~~~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~---~--~~~~~LIv~P~sl 227 (666)
.+...|-+-|++++..++.. ++-++|....|+|||.+.-+++..+ . ....++.++|+.-
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgk 895 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHR 895 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHH
Confidence 33457999999999988853 3456778889999999864444332 1 2456888999843
No 303
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.29 E-value=0.93 Score=49.51 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred HHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecC
Q 005980 179 RDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253 (666)
Q Consensus 179 ~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~ 253 (666)
..+++.++. .|.-++|+.++|.|||..++.++.... ...++|.|....-..|......++ ++...++.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rl-g~~~~~l~------ 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRL-GLPEPNLY------ 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHc-CCChHHeE------
Confidence 455666653 233468899999999999998877553 346899998776566655544433 22211111
Q ss_pred CCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh--------HH---HHHHhhh
Q 005980 254 GGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ--------AK---RTAATLP 322 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~--------s~---~~~~~~~ 322 (666)
+.....+......+...++++||+|..+.+.... ++ ....+..
T Consensus 153 --------------------------~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~ 206 (454)
T TIGR00416 153 --------------------------VLSETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMR 206 (454)
T ss_pred --------------------------EcCCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHH
Confidence 1111112223334455689999999998774321 11 1223455
Q ss_pred hhhhcceEEEeecc
Q 005980 323 IIKKAQYALLLSGT 336 (666)
Q Consensus 323 l~~~~~~~llLTgT 336 (666)
+++.....+++|+-
T Consensus 207 ~ak~~giTvllt~h 220 (454)
T TIGR00416 207 LAKTRGIAIFIVGH 220 (454)
T ss_pred HHHHhCCEEEEEec
Confidence 55555666777753
No 304
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=1.3 Score=44.37 Aligned_cols=46 Identities=30% Similarity=0.313 Sum_probs=35.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
++||-.++|.||+..|-|++.... ..+.-|..+.|+..|.-|-++.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHHHHHhccHHHH
Confidence 678999999999999998887643 4444455557899998776665
No 305
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.27 E-value=0.76 Score=47.50 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|..+.|+|||..|.+++..+.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999988877653
No 306
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.27 E-value=1.1 Score=48.76 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCC---CcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDV---WPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~---~~~LIv~P 224 (666)
.++|..++|+|||..+-+++..+... ..++.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 47899999999999988888766432 34555543
No 307
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.27 E-value=0.5 Score=55.86 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
|.+-++.++. ...+.||..++|.|||..+=+++..+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 4445665542 234789999999999999988887663
No 308
>PHA02244 ATPase-like protein
Probab=92.26 E-value=0.85 Score=47.72 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
+...+..++..+..++|..++|+|||..|-+++..+. .|++.+.
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg--~pfv~In 151 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD--LDFYFMN 151 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 3445556667788999999999999999998888753 5655553
No 309
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.24 E-value=1.1 Score=49.69 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=76.3
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
..++++|....+..+...+..|.++||.+........+.+.|++. |..+..++|+++..+|.+...+..+++. .+ ++
T Consensus 4 g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~-~I-VV 81 (505)
T TIGR00595 4 GVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI-LV-VI 81 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC-CE-EE
Confidence 457889999988888888889999999999999888888888765 7789999999999999888888777762 44 55
Q ss_pred eccccccccCcccCCEEEEecC
Q 005980 544 SMKAGGVGLTLTAASTVIFAEL 565 (666)
Q Consensus 544 st~a~~~GlnL~~a~~VI~~d~ 565 (666)
.|..+- =+-+.....||+-|-
T Consensus 82 GTrsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 82 GTRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred CChHHH-cCcccCCCEEEEECC
Confidence 554321 134567778887664
No 310
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.24 E-value=1 Score=47.15 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=33.2
Q ss_pred cCchHHHHHHHHHHHc---C---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQH---G---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~---~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+||||....+.+.+. + ...|+..+.|+||+..|.+++.++.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 4689998888877532 2 2458999999999999999988763
No 311
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.24 E-value=1.5 Score=51.49 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-++.+..++..+ ...||..+.|+|||..|..++..+.
T Consensus 22 ~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 22 HVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344555555542 2358999999999999999988775
No 312
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.15 E-value=0.34 Score=56.69 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHW 231 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW 231 (666)
..+++|..++|+|||..|-+++.... .+++.|-++.++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHhhcc
Confidence 45789999999999999999988764 567777666665554
No 313
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.15 E-value=1 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|..+.|+|||..|-+++....
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999988877543
No 314
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.14 E-value=0.79 Score=57.60 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=42.5
Q ss_pred hhhhcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCCc
Q 005980 169 HIESKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPSS 226 (666)
Q Consensus 169 ~~~~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~s 226 (666)
.+...|-+-|++|+..++.. ++-++|....|+|||.+.-+++..+. ....++.++|+.
T Consensus 963 ~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTg 1026 (1747)
T PRK13709 963 ELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTH 1026 (1747)
T ss_pred HhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcH
Confidence 33456899999999998864 34567778899999988766555432 234688889985
No 315
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.11 E-value=0.71 Score=51.68 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=27.6
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCCcchHHHH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPSSLRLHWA 232 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~sl~~qW~ 232 (666)
.++|..++|+|||..+-+++..+.. ...++.+.-..++..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 4788899999999888877776532 34555554434444433
No 316
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.05 E-value=0.85 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..++||..++|.|||..+-+++..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998888765
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.03 E-value=0.36 Score=49.95 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=35.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+.+.|.+.+..++..++++|++.+||+|||-..-+++...
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46678888898888888899999999999999888877765
No 318
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.00 E-value=0.41 Score=55.55 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..+.||..++|+|||..+-+++...
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5578999999999999988887654
No 319
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.98 E-value=0.36 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++||..++|+|||..|-+++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 56899999999999999988888764
No 320
>PRK09183 transposase/IS protein; Provisional
Probab=91.97 E-value=0.94 Score=45.57 Aligned_cols=48 Identities=29% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcch
Q 005980 180 DGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLR 228 (666)
Q Consensus 180 ~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~ 228 (666)
.++.| +..+..++|..++|+|||..|.+++... .....++.+....++
T Consensus 94 ~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 94 RSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 33445 5567788999999999999988876553 234466655433333
No 321
>CHL00176 ftsH cell division protein; Validated
Probab=91.94 E-value=1.2 Score=50.59 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=25.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
..++||..++|+|||..|=+++.... .|++-+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CCeeecc
Confidence 45789999999999999988877643 4554443
No 322
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.83 E-value=1.2 Score=45.98 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=27.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.+++|..++|+|||..+.|++..+.. ..+++++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999887743 44555554
No 323
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=1.6 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|+|||..|..++..+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999998765
No 324
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.74 E-value=0.69 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.||..+.|+|||..|..++..+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999999998875
No 325
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.71 E-value=0.28 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=14.1
Q ss_pred eeecCCCCcHHHHHHHH-HHhc
Q 005980 193 LLADEMGLGKTIQAIAV-ATCF 213 (666)
Q Consensus 193 iLad~~GlGKTi~ala~-~~~~ 213 (666)
++..-+|+|||+.|+.. +...
T Consensus 4 ~~~G~pGsGKS~~av~~~i~~~ 25 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSYVIIPA 25 (193)
T ss_dssp EEE--TTSSHHHHHHHHHHH-G
T ss_pred EEEcCCCCcHhHHHHHHHHHHH
Confidence 56677999999998876 4433
No 326
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=1.6 Score=48.24 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred eeecCCCCcHHHHHHHHHHhcC
Q 005980 193 LLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~ 214 (666)
|+..+.|+|||..|.+++..+.
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999988764
No 327
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.50 E-value=0.45 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
..+++|..+.|+|||..|-+++..+. .+.+-+..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~--~~~~~v~~ 189 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVG 189 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC--CCEEecch
Confidence 45789999999999999999888664 34444433
No 328
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.36 E-value=2.1 Score=47.74 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-...+..+++.+. ..|+.++.|+|||..|..++..+.
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444555555433 257999999999999999998765
No 329
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.34 E-value=2.6 Score=43.72 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+.+.+..+++.+ ..++|..+.|+|||..+-+++..+.
T Consensus 24 ~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 24 EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444455445443 2489999999999999988887653
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=91.28 E-value=1.9 Score=46.67 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=26.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC--CCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD--VWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~--~~~~LIv~P~ 225 (666)
++++...|+|||.++..++.++.. ..++++|+-.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 578899999999999999887753 4567777543
No 331
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.27 E-value=0.54 Score=44.69 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.+-|.|.+.+.++++.+..++++.++|+|||-..-+++..+.....++.+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 45577999999999989899999999999998877777666544444433
No 332
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=91.20 E-value=0.45 Score=49.17 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-----CCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-----RDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-----~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
|-+-|.++|++ . .+.+++-...|+|||.+++.-+.++ .....+|+++++ .....-...+...+
T Consensus 1 l~~eQ~~~i~~--~-~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--T-EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--C-CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 45779999988 3 3455555569999999988765543 134569999999 45555666666554
No 333
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.18 E-value=2.8 Score=47.68 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 179 RDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 179 ~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...+..++..+. ..||..+.|+|||..|..++..+.
T Consensus 25 v~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 25 VKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 334444454332 469999999999999999988765
No 334
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.15 E-value=2 Score=42.07 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=17.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
++|..+.|+|||--.-|++..+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999998666665544
No 335
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.12 E-value=0.87 Score=49.62 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=24.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
.++|.++.|+|||-.+-+++..+.. ..+++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 4789999999999988888876643 34455444
No 336
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.06 E-value=1.5 Score=44.97 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=71.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
+++..-.|.|||.+.--++.++.. ..++++.+--.-..-=.++++.|... ..+.++... .|.+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er--~gv~vI~~~-~G~DpA----------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER--LGVPVISGK-EGADPA----------- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH--hCCeEEccC-CCCCcH-----------
Confidence 567788999999998888888865 45677766555554445555556421 122233221 111110
Q ss_pred CCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhH------HHHHHhhhhhhhcceEEEe--eccCCCCCh
Q 005980 271 NIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQA------KRTAATLPIIKKAQYALLL--SGTPALSRP 342 (666)
Q Consensus 271 ~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s------~~~~~~~~l~~~~~~~llL--TgTP~~n~~ 342 (666)
-+-|+.+..-. ..++|+||+|=|-++-|... +..+.+.+....+++.++| =||-=+|.+
T Consensus 208 ---------aVafDAi~~Ak----ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 208 ---------AVAFDAIQAAK----ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred ---------HHHHHHHHHHH----HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 12355554433 45899999999999977532 2222223332344555554 477766655
Q ss_pred HH
Q 005980 343 IE 344 (666)
Q Consensus 343 ~e 344 (666)
..
T Consensus 275 ~Q 276 (340)
T COG0552 275 SQ 276 (340)
T ss_pred HH
Confidence 43
No 337
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=1.2 Score=49.26 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=33.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
..|+|+-.++|.|||+.|=+++... +-.++-++. .|...|.-|=++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk~vGeSEr~ 515 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSKYVGESERA 515 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHHhcCchHHH
Confidence 5789999999999999999888753 333444443 5666665554443
No 338
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.96 E-value=1.3 Score=50.72 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=74.6
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHH----HhCCceEEEEECCCCHHHHHHHHHHhcCCCCceE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLF----LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L----~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 540 (666)
...+++|--...--+......|.+++|.+.....+..+.+.+ ...|+++..++|+++..+|..+.+...+++ +.+
T Consensus 263 g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~I 341 (630)
T TIGR00643 263 GDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHL 341 (630)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCE
Confidence 456888887665555555678999999999887766655544 445899999999999999999999988776 355
Q ss_pred EEEeccccccccCcccCCEEEEecCC
Q 005980 541 AVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 541 ~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
++.+.......+.+.....||+=+.+
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EEecHHHHhccccccccceEEEechh
Confidence 55555555566777777777765544
No 339
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.90 E-value=1.7 Score=50.11 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=76.8
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
..++++|....+..+...+..|.++||.+.....+..+.+.|++. |..+..++|+++..+|.+...+...+. .. +++
T Consensus 169 ~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~-~~-IVV 246 (679)
T PRK05580 169 GVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE-AK-VVI 246 (679)
T ss_pred CCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC-CC-EEE
Confidence 346788999988888888888999999999999988888888774 788999999999999988888887776 24 445
Q ss_pred eccccccccCcccCCEEEEecCC
Q 005980 544 SMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 544 st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
+|..+- =+.+.....||+-|-+
T Consensus 247 gTrsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 247 GARSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred eccHHh-cccccCCCEEEEECCC
Confidence 554321 2456677778776643
No 340
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.83 E-value=2 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|+|||..|..++..+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999988775
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.79 E-value=2.4 Score=45.80 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=27.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPS 225 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~ 225 (666)
-++++...|+|||.++..++.++. ...++++|+-.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 367899999999999998888753 45677777644
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.79 E-value=3.7 Score=44.25 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.9
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPS 225 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~ 225 (666)
-++++...|+|||.++..++.++.. ..++++|+--
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 3568888999999999988887754 4577777654
No 343
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=2 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|+|||..|.+++..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999988764
No 344
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.74 E-value=3.6 Score=45.31 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=25.5
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEe
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRD---VWPVLILT 223 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~ 223 (666)
.|+.+.|..++|.|||.++..++..+.. ..++.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3566778889999999998777765432 34566664
No 345
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.69 E-value=0.72 Score=51.80 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=95.5
Q ss_pred CChhhhhcCchHHHHHHHHHHHcC-CCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHH-HHHHhc
Q 005980 166 IPAHIESKLLPFQRDGVRFALQHG-GRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAM-IQQWLN 240 (666)
Q Consensus 166 ~p~~~~~~L~p~Q~~~v~~~~~~~-~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e-~~~~~~ 240 (666)
.|........|||++-.+.+-... ..+.+.-..-+|||.+++..+.+. ....|+|++.|+ .....|.++ |...+.
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 455556789999999998876543 356677778999999888877765 347889999999 677777743 444332
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC----hhHHH
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN----AQAKR 316 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn----~~s~~ 316 (666)
-.+.-...+.... ......++ ......++.+.++...+- ..|.....+++++||...+.. .+.-.
T Consensus 89 ~sp~l~~~~~~~~--~~~~~~t~-----~~k~f~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 89 ASPVLRRKLSPSK--SRDSGNTI-----LYKRFPGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred hCHHHHHHhCchh--hcccCCch-----hheecCCCEEEEEeCCCC----cccccCCcCEEEEechhhccccCccCCCHH
Confidence 1110000000000 00000000 001111233444443322 233456789999999999842 12222
Q ss_pred HHHhhhhhh-hcceEEEeeccCCCCChHHHHHHH
Q 005980 317 TAATLPIIK-KAQYALLLSGTPALSRPIELFKQL 349 (666)
Q Consensus 317 ~~~~~~l~~-~~~~~llLTgTP~~n~~~el~~~l 349 (666)
..+..+... ....++++..||-......+....
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 222121111 256789999999876544444443
No 346
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=2.4 Score=48.27 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=25.0
Q ss_pred HHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 182 VRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 182 v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++..+ ...|+..+.|+|||..|.+++..+.
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 34444433 2458999999999999999999875
No 347
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.63 E-value=0.91 Score=46.31 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~s 226 (666)
++-+++..++|+|||.++..++.++.. ..++.+|.-..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 445678899999999999988887642 35677776443
No 348
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.61 E-value=4.1 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=33.6
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~ 235 (666)
.|.-+++..++|+|||..++.++... .+..+++.++...-..+-.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 35567889999999999988777755 5567888888654333333333
No 349
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.49 E-value=3.7 Score=40.55 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 180 DGVRFALQ----HGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 180 ~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
.++..++. .|.-+++..++|+|||..+..++.. .....+++.+.-..-..+..+.+..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC
Confidence 44555553 2444688899999999999988764 45677888887665555555655554
No 350
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=90.35 E-value=0.87 Score=49.30 Aligned_cols=38 Identities=32% Similarity=0.230 Sum_probs=27.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
+.+++|..++|+|||..|=+++..+. .+++-|..+.+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~--~~fi~V~~seL~ 254 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETS--ATFLRVVGSELI 254 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--CCEEEEecchhh
Confidence 45789999999999999998888654 344444444443
No 351
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.23 E-value=0.55 Score=54.27 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=47.3
Q ss_pred hcCchHHHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCC-cchHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPS-SLRLHWAAMIQ 236 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~-sl~~qW~~e~~ 236 (666)
..+||.|.+.+..+ +..+..+++=.+||+|||+..|+.+..+. ...+++|.+++ .+..|-.++..
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 47899999988765 44455589999999999999887776654 34677777777 45666544433
No 352
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.21 E-value=2.9 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.2
Q ss_pred HHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 180 DGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 180 ~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+..++..+ ...|+..+.|+|||..|-.++..+.
T Consensus 31 ~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 31 KVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444433 2579999999999999999998774
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.18 E-value=6.6 Score=39.75 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=32.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEeCCcchHHHHHHHHHHh
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDV-WPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
-+++...+|.|||.++..++..+... +++++|.-......=.+++..|.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~ 123 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWA 123 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 45677899999999999888877544 57777764432222234555554
No 354
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.17 E-value=0.69 Score=49.18 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHh
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
++++.++++-.++|+|||-.+.++...
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 456788999999999999887765443
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.16 E-value=7.5 Score=36.18 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=23.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDV-WPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~ 223 (666)
+++..++|+|||..+..++..+... .++++|.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4677889999999999888876544 4555554
No 356
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.98 E-value=0.76 Score=43.47 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=71.8
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHH-HHHHHHHhcCCCCcEEEEEecCCCCCccceeEEe
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHW-AAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVS 265 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW-~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 265 (666)
..+.+++....|-|||-.|++++... ....+++||== +...| ..|....-.++ .+....... + +.+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF--lKg~~~~GE~~~l~~l~--~v~~~~~g~-~-----~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF--IKGAWSTGERNLLEFGG--GVEFHVMGT-G-----FTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE--ecCCCccCHHHHHhcCC--CcEEEECCC-C-----CcccC
Confidence 35678888899999999999887754 44667777721 11112 12222221111 222221110 0 00000
Q ss_pred cCCCCCCCCCCcEEEEeHH-HHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcc--eEEEeeccCCCCCh
Q 005980 266 SNTKRNIPLDGLFNIISYD-VVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ--YALLLSGTPALSRP 342 (666)
Q Consensus 266 ~~~~~~~~~~~~v~I~sy~-~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~--~~llLTgTP~~n~~ 342 (666)
. +..-.+.... .+..-...+....|++||+||.-..-+.+--....+..++...+ --+.|||--.+..+
T Consensus 91 ~--------~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 91 Q--------DRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred C--------CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0 0000011111 12222344566789999999987665544333444444443332 25999998554444
Q ss_pred HHHHHHH
Q 005980 343 IELFKQL 349 (666)
Q Consensus 343 ~el~~~l 349 (666)
.|+..++
T Consensus 163 ie~ADlV 169 (191)
T PRK05986 163 IEAADLV 169 (191)
T ss_pred HHhCchh
Confidence 4444333
No 357
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.96 E-value=0.84 Score=46.04 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.9
Q ss_pred cCchHHHHHHHHHHHcC-CCeeeecCCCCcHHHHHHHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQHG-GRILLADEMGLGKTIQAIAVATCFRDV 216 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~-~~~iLad~~GlGKTi~ala~~~~~~~~ 216 (666)
.+.|.|.+.+.+++... +-++++.+||+|||-..-+++..+...
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~ 107 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTP 107 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCC
Confidence 36678999998888654 457899999999999988887776543
No 358
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=89.96 E-value=4.4 Score=45.78 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred HhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCC
Q 005980 293 LMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338 (666)
Q Consensus 293 l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~ 338 (666)
.....++++|+|||+.+.. ....++.+.+......+.+..||.
T Consensus 290 ~RG~~~DLLIVDEAAfI~~---~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 290 ARGQNPDLVIVDEAAFVNP---GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred cCCCCCCEEEEECcccCCH---HHHHHHHHHHccCCCceEEEeCCC
Confidence 3445789999999999977 344456666544455566666664
No 359
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.89 E-value=3.7 Score=46.28 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+=+..+..++..+ ...|+..+.|+|||..|..++..+.
T Consensus 23 ~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 23 TVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3344555555543 2467899999999999999998774
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.87 E-value=3.4 Score=46.19 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-...+..++..+. ..|+..+.|+|||..|..++..+.
T Consensus 23 ~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 23 HVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444444454322 358999999999999999988774
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.74 E-value=0.74 Score=47.35 Aligned_cols=42 Identities=31% Similarity=0.260 Sum_probs=34.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+-+.|.+.+..+++.+++++++.+||+|||-.+-+++..+.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 345567777877888788999999999999999888887764
No 362
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.70 E-value=3.1 Score=44.82 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 180 DGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 180 ~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.+..+++.| ...|+..+.|+|||..|.+++..+.
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445443 2368999999999999999998774
No 363
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.65 E-value=0.85 Score=52.97 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=24.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.+++..++|+|||..|-+++..+. .+++.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~--~~~i~i 519 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALG--IELLRF 519 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCcEEe
Confidence 578999999999999999988774 455544
No 364
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.65 E-value=4.9 Score=45.11 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=93.6
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEE
Q 005980 413 QVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIF 492 (666)
Q Consensus 413 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF 492 (666)
.++..++..|.+...++..++..- ..+.+-+-.+-+|+|.-...=-+....+.|.++.+.
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~--------------------~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALM 317 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASP--------------------VPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALM 317 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCc--------------------hhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEe
Confidence 345678888887777766654321 111122234557788655444444556789999988
Q ss_pred eccH----HHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc-ccccCcccCCEEEEecC
Q 005980 493 AHHQ----PMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG-GVGLTLTAASTVIFAEL 565 (666)
Q Consensus 493 ~~~~----~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~-~~GlnL~~a~~VI~~d~ 565 (666)
+... .+.+.+.++|...|+++..++|++..++|.++.++-.+|. .-+++.|.|+ -+.+++.+.-.||+=+.
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhhhcceeecceeEEEEecc
Confidence 8754 4567788888889999999999999999999999999998 4566666665 67888888888886543
No 365
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=89.52 E-value=2.1 Score=55.31 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=45.6
Q ss_pred hcCchHHHHHHHHHHHcC-CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcc-hHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHG-GRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSL-RLHWAA 233 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~-~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl-~~qW~~ 233 (666)
..|-+-|+++|..++..+ .-.+|-...|+|||.+.-++...+.. ..++++++|+.- .....+
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 468899999999888743 34577778999999887777665543 568999999953 333433
No 366
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.46 E-value=3 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
..++|..+.|+|||..+-.++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999988877643
No 367
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.45 E-value=3.8 Score=45.97 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+-.+.+..++..+ ...|+.++.|.|||..|.+++..+.
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344444455433 2368999999999999999998874
No 368
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.45 E-value=4.1 Score=42.56 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+++..+.|+|||..|.+++..+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC
Confidence 3689999999999999998888764
No 369
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.40 E-value=0.75 Score=51.12 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
..++||..++|+|||..|-+++.... .|++.+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~ 120 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSIS 120 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC--CCeeecc
Confidence 45789999999999999988887643 4444443
No 370
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=89.37 E-value=0.78 Score=47.69 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl 227 (666)
|+.+|++.++|+|||-.|++++..+...-|+..++-+.+
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 667899999999999999999999999999988877644
No 371
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=89.30 E-value=0.9 Score=47.12 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+-+.|.+.+..+++.+++++++.+||+|||-.+-+++..+
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45678889898888888899999999999998777777653
No 372
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.24 E-value=0.71 Score=48.14 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=37.6
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
+...+++|..+.|.|||++|-+++..+. -+++++....|...|.-|=++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~ 195 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKL 195 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHH
Confidence 3456788999999999999999988865 4567776667777775554443
No 373
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.21 E-value=1.5 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.6
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..+||..++|+|||..|-+++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887754
No 374
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.16 E-value=0.74 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
..+++.++|.|||..|-+++..+..
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3689999999999999999987753
No 375
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.13 E-value=1 Score=53.29 Aligned_cols=31 Identities=35% Similarity=0.351 Sum_probs=24.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
+++..++|.|||..|-+++..+......+|.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~ 629 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLIT 629 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEE
Confidence 6899999999999999998877544333333
No 376
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.08 E-value=3.9 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|+|||..|..++..+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999988764
No 377
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.06 E-value=4.2 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+..+.|.||+..|.+++..+.
T Consensus 28 a~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 28 AYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 569999999999999999998865
No 378
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.96 E-value=0.4 Score=45.04 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=24.0
Q ss_pred CcEEEEeHHHHHHHH--HHH--hcCCccEEEEcCccccCC
Q 005980 276 GLFNIISYDVVLKLQ--NIL--MSSNFKIVIADESHFLKN 311 (666)
Q Consensus 276 ~~v~I~sy~~l~~~~--~~l--~~~~~~~vIiDEaH~~kn 311 (666)
.+|+|++|..+.... ..+ ...+..+||+||||++-+
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 348899999886432 222 234567999999999955
No 379
>CHL00206 ycf2 Ycf2; Provisional
Probab=88.84 E-value=1 Score=56.10 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHW 231 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW 231 (666)
.+|+||.+++|+|||+.|=|+|.... -|.+-|..+.++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcc
Confidence 56899999999999999999888643 677777666776655
No 380
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.83 E-value=0.33 Score=45.18 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhc--ceEEEeeccCCCCChHHHH
Q 005980 290 QNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA--QYALLLSGTPALSRPIELF 346 (666)
Q Consensus 290 ~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~--~~~llLTgTP~~n~~~el~ 346 (666)
...+...+||+||+||.-..-+.+--....+..++... .--+.|||.-.+..+.|+.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 34455678999999998765443322223344444322 2359999985544444443
No 381
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.62 E-value=2 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
.|+..+.|.|||..|.+++..+..
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhC
Confidence 799999999999999999998753
No 382
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.46 E-value=5.1 Score=45.31 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
|....+..++..+. ..|+..+.|.|||..|..++..+.
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44455555554432 348999999999999999988764
No 383
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.44 E-value=0.54 Score=47.65 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEEe
Q 005980 176 PFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDV-WPVLILT 223 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv~ 223 (666)
+...+.+..+++.++.++++.+||+|||-+.-+++..+... .++++|-
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 34444555555668889999999999999998888887666 5666554
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.43 E-value=1.1 Score=46.87 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.+-+.++++.+++++++.+||+|||-..-+++.......++++|
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 34555667778899999999999999888888887766666554
No 385
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.20 E-value=4.4 Score=44.52 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-.+.+..++..+ ...|+..+.|+|||..|..++..+.
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 334444444432 2579999999999999998887653
No 386
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.15 E-value=8.2 Score=40.67 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++.+..++..|. ..|+..+.|+|||..|.+++..+.
T Consensus 22 ~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 22 IVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444454432 358899999999999999888764
No 387
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.13 E-value=14 Score=39.12 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=31.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCc----chHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSS----LRLHWAA 233 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~s----l~~qW~~ 233 (666)
+.-+++..++|+|||.++..++..+. ...++.+|+-.. .+.||..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHH
Confidence 44456888999999999888877663 345676666432 2667755
No 388
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=87.72 E-value=3.8 Score=48.86 Aligned_cols=102 Identities=9% Similarity=0.055 Sum_probs=77.3
Q ss_pred hcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
..+.+++|..+.+..+...+..|.+++|.++....+....+.+.+ .++++..++|.++..++.++++....+. +.
T Consensus 478 ~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-~d 556 (926)
T TIGR00580 478 CGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK-ID 556 (926)
T ss_pred ECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC-ce
Confidence 345688898877666666667789999999999888777766554 4778899999999999999999998875 35
Q ss_pred EEEEeccccccccCcccCCEEEEecCC
Q 005980 540 AAVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 540 v~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
+++.+.......+.+.....+|+=+-+
T Consensus 557 IVIGTp~ll~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 557 ILIGTHKLLQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred EEEchHHHhhCCCCcccCCEEEeeccc
Confidence 555555555666778888888875543
No 389
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.71 E-value=2.9 Score=49.74 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=24.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCC-CcEEEE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDV-WPVLIL 222 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~-~~~LIv 222 (666)
.+++.+++|.|||..|-+++..+... .+++.+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 47899999999999999999876543 444443
No 390
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=87.69 E-value=3.1 Score=48.17 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
|-|-|+++|.+. .+.+++-...|+|||.+.+.-+.++-. ...+|+|+.+ ....+..+.+.+.++
T Consensus 2 Ln~~Q~~av~~~---~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV---TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 678899998752 345555556999999998876665431 2348888876 667777777776653
No 391
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=87.54 E-value=4.5 Score=41.17 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-----------CCCCcEEEEeC----CcchHHHHHHHHHHhcCCCC
Q 005980 180 DGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-----------RDVWPVLILTP----SSLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 180 ~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-----------~~~~~~LIv~P----~sl~~qW~~e~~~~~~~~~~ 244 (666)
+-+.-....+.+.||+.+-|+|||..+|-+.-.+ .+.+.+|+|.- .+++.-. +.+..-.++++.
T Consensus 80 ~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl-~~v~a~mgLsPa 158 (402)
T COG3598 80 QLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERL-EPVRARMGLSPA 158 (402)
T ss_pred hhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHH-HHHHHHcCCChH
Confidence 3444445567788998889999998876432221 24667888853 3344333 333444566666
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccC
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLK 310 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~k 310 (666)
++..+.. .+- ...... -.+.+.....+....+...++++||+|-.=.+-
T Consensus 159 dvrn~dl----td~---------~Gaa~~----~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~ 207 (402)
T COG3598 159 DVRNMDL----TDV---------SGAADE----SDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFY 207 (402)
T ss_pred hhhheec----ccc---------ccCCCc----cccccHHHHHHHHHHHHHhCCCeEEEcchhhhc
Confidence 6543322 000 001110 113344445555555667799999999765553
No 392
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.48 E-value=1.9 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+++..++|+|||..|-+++..+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc
Confidence 368999999999999999988773
No 393
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.23 E-value=6.7 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|.|||..|..++..+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999888764
No 394
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.05 E-value=5.9 Score=45.53 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+....+..+++.+. ..|+.++.|.|||..|-.++..+.
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 33445555555432 258999999999999999988764
No 395
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.92 E-value=3.7 Score=43.74 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.-++|..++|+|||--+-|+........|-..|.+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 357899999999998766666666555665555554
No 396
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=86.80 E-value=1.7 Score=47.97 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHH--------cCCCeeeecCCCCcHHHHHHHHHHhc--C--CC-CcEEEEeCC
Q 005980 176 PFQRDGVRFALQ--------HGGRILLADEMGLGKTIQAIAVATCF--R--DV-WPVLILTPS 225 (666)
Q Consensus 176 p~Q~~~v~~~~~--------~~~~~iLad~~GlGKTi~ala~~~~~--~--~~-~~~LIv~P~ 225 (666)
|||+..+..++. +-..+++.-+=|-|||..+.+++.+. . .. .-+++++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 789888776651 11235666678999998877665532 1 22 336777776
No 397
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.77 E-value=1.7 Score=47.91 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=37.1
Q ss_pred hcCchHHHHHHHHHHHcCCC-eeeecCCCCcHHHHHHHHHHhcCCCCc
Q 005980 172 SKLLPFQRDGVRFALQHGGR-ILLADEMGLGKTIQAIAVATCFRDVWP 218 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~-~iLad~~GlGKTi~ala~~~~~~~~~~ 218 (666)
..+.|.|.+.+.+++..+.| ++++.+||+|||.+.-+++..+.....
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~ 271 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPER 271 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCC
Confidence 35788999999999876555 579999999999998877776654333
No 398
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.66 E-value=6.9 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+.++.|.|||..|..++..+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999988764
No 399
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.66 E-value=3.7 Score=41.32 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P 224 (666)
|.-.+++.++|+|||..++.++... +...+++.+.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3345789999999999999877643 55678888873
No 400
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=3 Score=43.07 Aligned_cols=38 Identities=32% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
..|+||-.++|+|||+.|=|+|..-. -.++=|+-+.++
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrvvgSElV 222 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRVVGSELV 222 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC--ceEEEeccHHHH
Confidence 67899999999999999998887532 334444443343
No 401
>PRK06620 hypothetical protein; Validated
Probab=86.57 E-value=2.6 Score=40.98 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=17.4
Q ss_pred CCeeeecCCCCcHHHHHHHHHH
Q 005980 190 GRILLADEMGLGKTIQAIAVAT 211 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~ 211 (666)
..++|..+.|+|||-.+-+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 3479999999999987766444
No 402
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=86.55 E-value=9.7 Score=38.42 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=33.6
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CC-CCcEEEEeCCcchHHHHHHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RD-VWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~-~~~~LIv~P~sl~~qW~~e~ 235 (666)
.|.-++|+..+|+|||..++.++..+ .. ..+++++.-..-..+....+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHH
Confidence 35567889999999999998877754 33 67888887654444444333
No 403
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.54 E-value=5.4 Score=37.77 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+..+.|.|||..|..++..+.
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999988764
No 404
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.51 E-value=4.1 Score=40.12 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=30.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~q 230 (666)
..++|+-.++|+|||.+|=|++...+ -|+|.|--+.|+..
T Consensus 151 PknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGe 190 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGE 190 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHH
Confidence 56889999999999999998877644 66666655566543
No 405
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.50 E-value=6.5 Score=38.74 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=27.2
Q ss_pred ecCCCCcHHHHHHHHHHhcCC-CCcEEEEe--CCcchHHHHH
Q 005980 195 ADEMGLGKTIQAIAVATCFRD-VWPVLILT--PSSLRLHWAA 233 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~~-~~~~LIv~--P~sl~~qW~~ 233 (666)
.--=|.|||.+++.++..+.. ..+++||= |..-...|..
T Consensus 8 n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 8 SFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Confidence 344589999999998887744 45777773 4555667754
No 406
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.43 E-value=1.8 Score=51.30 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=24.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
.+++..++|+|||..|-+++..+.. ..+++.+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i 632 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 4789999999999999999887643 3344433
No 407
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.38 E-value=6.5 Score=44.28 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-...+..++..+ ...|+..+.|+|||..|-.++..+.
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 24 ITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444432 2357899999999999998888764
No 408
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=86.18 E-value=2.5 Score=54.51 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=39.5
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHH----HhcC-CCCcEEEEeCCcc
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVA----TCFR-DVWPVLILTPSSL 227 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~----~~~~-~~~~~LIv~P~sl 227 (666)
..|-+-|++|+..++.. ++-+++-...|+|||.+..+++ ..+. ....++.++|+.-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~ 1079 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHE 1079 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHH
Confidence 46899999999998864 3345666789999998874332 2222 3456888899843
No 409
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=2.3 Score=46.78 Aligned_cols=47 Identities=23% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQ 237 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~ 237 (666)
..|+||+.++|.|||+.|=|++...+ -.++=|-=..|+..|.-|=++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag--~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG--ANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc--CceEeecCHHHHHHHhhhHHH
Confidence 67899999999999999999887643 333333333677777666444
No 410
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=85.92 E-value=1.6 Score=45.79 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
.+-+..+++.+++++++.+||+|||-.+-+++..+....+++.|=.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 3445556677889999999999999998888887766666655433
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.86 E-value=6.9 Score=42.10 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=30.3
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc--C-CCCcEEEEeCCcchHHHHHHHHHHh
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF--R-DVWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~--~-~~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
.|+.+.|..++|.|||-+...++..+ . ....+-+++......-..+.+..|.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a 244 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYG 244 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHH
Confidence 45567788999999998876665532 2 2234555555443333334444443
No 412
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=85.82 E-value=0.94 Score=46.50 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s 226 (666)
|.++|++.++|+|||-.|++++..+...-|+.=+.-+.
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsE 102 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSE 102 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccce
Confidence 56789999999999999999999999888876665553
No 413
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=3 Score=43.34 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
+++..=-|+|||.+..-++++|+ +.+++.+||-..-..---++++.+.- ...+-+ +..+...+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~--k~~iP~-ygsyte~d------------- 167 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNAT--KARVPF-YGSYTEAD------------- 167 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhH--hhCCee-Eecccccc-------------
Confidence 35566689999999988888885 46677777765444333344444431 011111 11111111
Q ss_pred CCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh
Q 005980 271 NIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 271 ~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~ 313 (666)
.......-.+.+.+-+|++||+|-+-+.+-..
T Consensus 168 -----------pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 168 -----------PVKIASEGVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred -----------hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhH
Confidence 11223344566777799999999987776543
No 414
>PRK04132 replication factor C small subunit; Provisional
Probab=85.67 E-value=4.7 Score=47.27 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=53.6
Q ss_pred cCCCCcHHHHHHHHHHhcC-C--CCcEEEEeCCcc--hHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCC
Q 005980 196 DEMGLGKTIQAIAVATCFR-D--VWPVLILTPSSL--RLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKR 270 (666)
Q Consensus 196 d~~GlGKTi~ala~~~~~~-~--~~~~LIv~P~sl--~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
.+.++|||-.|.+++..+. + ..+++-+-+++- +.+-.+-++.+....
T Consensus 573 lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~---------------------------- 624 (846)
T PRK04132 573 LPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---------------------------- 624 (846)
T ss_pred CCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcC----------------------------
Confidence 3789999999999998763 2 235666666652 333333333332100
Q ss_pred CCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhh--cceEEEeeccCC
Q 005980 271 NIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK--AQYALLLSGTPA 338 (666)
Q Consensus 271 ~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~--~~~~llLTgTP~ 338 (666)
.+...++.+||+||||.+... ...++++++.. ..-+++|+.++.
T Consensus 625 ---------------------~~~~~~~KVvIIDEaD~Lt~~---AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 625 ---------------------PIGGASFKIIFLDEADALTQD---AQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred ---------------------CcCCCCCEEEEEECcccCCHH---HHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 001125789999999999542 33445555432 455677777664
No 415
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.60 E-value=4.9 Score=38.78 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSS 226 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~s 226 (666)
..+..+.|+|||..++.++... ....+++.|.-..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5788999999999998887754 3456777777654
No 416
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=85.57 E-value=0.7 Score=43.55 Aligned_cols=41 Identities=34% Similarity=0.456 Sum_probs=27.6
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcc
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSL 227 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl 227 (666)
+.+.+++|..++|.|||..|.+++..+. ...+++.+.-..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 4467889999999999999999987553 4556666653333
No 417
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=85.19 E-value=3.1 Score=43.05 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=34.1
Q ss_pred HHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHH
Q 005980 180 DGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLH 230 (666)
Q Consensus 180 ~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~q 230 (666)
.+++.++. +|.-+.++.+.|+|||..++.++... +..+++++|.......+
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH
Confidence 45555553 23345788999999999998776654 45677877766544443
No 418
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.16 E-value=15 Score=41.49 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 176 PFQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++-...+..+++.+. ..|+..+.|.|||..|.+++..+.
T Consensus 22 e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 22 DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 344445555555432 258999999999999999998775
No 419
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=85.06 E-value=3.2 Score=46.64 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=64.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhc---CCCCcEEEEeCC-cchHHHHHHHHHHhc--CCCCcEEEEEecCCCCCccceeEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCF---RDVWPVLILTPS-SLRLHWAAMIQQWLN--IPPSEIVVVLSQLGGSNRSGFTIVS 265 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~---~~~~~~LIv~P~-sl~~qW~~e~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 265 (666)
.++.-+=--|||.....++..+ ..+..+++++|. .....--+|+...+. .+...+..+ .+ +.+.+..
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v----kG---e~I~i~f 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV----KG---ETISFSF 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee----cC---cEEEEEe
Confidence 3455557789998666544432 246789999997 555555566555331 122111111 01 1111111
Q ss_pred cCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh-hcceEEEeecc
Q 005980 266 SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK-KAQYALLLSGT 336 (666)
Q Consensus 266 ~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~-~~~~~llLTgT 336 (666)
.+.. ...+...| . ...+.+....|+++|+||||.++... ..++.+.+. ..+..|.+|-|
T Consensus 330 ~nG~-----kstI~FaS---a-rntNsiRGqtfDLLIVDEAqFIk~~a---l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 330 PDGS-----RSTIVFAS---S-HNTNGIRGQDFNLLFVDEANFIRPDA---VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred cCCC-----ccEEEEEe---c-cCCCCccCCcccEEEEechhhCCHHH---HHHHHHHHhccCccEEEEecC
Confidence 1110 01122221 0 11223455689999999999998743 223333332 45666777765
No 420
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.98 E-value=4.1 Score=45.09 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 176 PFQRDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 176 p~Q~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
+.-..++..++. .|.-+++..++|+|||..++-++... ++..+++++.--.-..|-...++.+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc
Confidence 334566777664 24457899999999999999887755 4456889988766666666666544
No 421
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=84.93 E-value=1.9 Score=42.97 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=20.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|..++|+|||-.|--++..+.
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emg 77 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELG 77 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhc
Confidence 479999999999998887777654
No 422
>PRK10689 transcription-repair coupling factor; Provisional
Probab=84.86 E-value=6.8 Score=47.97 Aligned_cols=101 Identities=10% Similarity=0.018 Sum_probs=73.8
Q ss_pred hcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
...++++|....+..+.....+|.+++|.+..+..+..+.+.+.+ .++++..++|..+.+++.++++..+++. +.
T Consensus 627 ~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~-~d 705 (1147)
T PRK10689 627 CGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK-ID 705 (1147)
T ss_pred EcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC-CC
Confidence 345678898766555544456799999999999887777776654 3578888999999999999999887764 35
Q ss_pred EEEEeccccccccCcccCCEEEEecC
Q 005980 540 AAVLSMKAGGVGLTLTAASTVIFAEL 565 (666)
Q Consensus 540 v~L~st~a~~~GlnL~~a~~VI~~d~ 565 (666)
+++.+.......+.+.....+|+=+-
T Consensus 706 IVVgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 706 ILIGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred EEEECHHHHhCCCCHhhCCEEEEech
Confidence 55666555555667777777776443
No 423
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=2.6 Score=48.46 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=26.5
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
|.++++.+||.|||-.|-+++..+......+|-
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR 554 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIR 554 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCcccee
Confidence 467889999999999999999988755444443
No 424
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=84.73 E-value=0.93 Score=46.41 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=25.5
Q ss_pred CCcEEEEeHHHHHHHH--HHH-hcCCccEEEEcCccccCC
Q 005980 275 DGLFNIISYDVVLKLQ--NIL-MSSNFKIVIADESHFLKN 311 (666)
Q Consensus 275 ~~~v~I~sy~~l~~~~--~~l-~~~~~~~vIiDEaH~~kn 311 (666)
..+|+|++|..+.... ..+ ...+..+||+||||++-.
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 4458899999886433 111 122567999999999944
No 425
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=84.73 E-value=0.93 Score=46.41 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=25.5
Q ss_pred CCcEEEEeHHHHHHHH--HHH-hcCCccEEEEcCccccCC
Q 005980 275 DGLFNIISYDVVLKLQ--NIL-MSSNFKIVIADESHFLKN 311 (666)
Q Consensus 275 ~~~v~I~sy~~l~~~~--~~l-~~~~~~~vIiDEaH~~kn 311 (666)
..+|+|++|..+.... ..+ ...+..+||+||||++-.
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 4458899999886433 111 122567999999999944
No 426
>PHA00729 NTP-binding motif containing protein
Probab=84.53 E-value=6 Score=38.61 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+++|...+|+|||..|.+++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999988864
No 427
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.53 E-value=4.9 Score=46.08 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=91.6
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-C-ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-K-VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
+|+|.+..++++...+..|+.+||...-......+...|+.. | ..+..+|++.+..+|.+...+..+|+ ..+++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--ARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--CcEEEEc
Confidence 679999999999999999999999999999999888888876 4 67999999999999999999998887 3456666
Q ss_pred cccccccCcccCCEEEEecCCCC-cch----hhhhhhhhhccCCCCcEEEEEEEeCCCHHHHH
Q 005980 546 KAGGVGLTLTAASTVIFAELSWT-PGD----LIQAEDRAHRIGQVSSVNVYYLLANDTVDDIV 603 (666)
Q Consensus 546 ~a~~~GlnL~~a~~VI~~d~~wn-p~~----~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i 603 (666)
+++- =.-+.+...||+-|-+-. ..+ +.++.+=+...++...+.++.--+.-|+|...
T Consensus 248 RSAv-FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 6532 123445566666554321 110 11222222222344455555555566677543
No 428
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=84.46 E-value=0.85 Score=48.16 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCc
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWP 218 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~ 218 (666)
-.+.+..+..|+|+|.++|+|||.=|-|++.+|...++
T Consensus 255 l~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 255 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred HHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 34567777789999999999999999999988877666
No 429
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.35 E-value=2.4 Score=42.75 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=28.4
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
..+..++|.+++|+|||..|.+++..+ ..|++.++
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~l--g~~~~~i~ 53 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKR--DRPVMLIN 53 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHh--CCCEEEEe
Confidence 347789999999999999999998765 46777664
No 430
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.17 E-value=13 Score=41.27 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 179 RDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 179 ~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+.+..+++.|. ..|+.++.|.|||..|.+++..+.
T Consensus 23 ~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 445555565443 238999999999999999988763
No 431
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.14 E-value=1.9 Score=50.53 Aligned_cols=34 Identities=29% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
+.+++|..++|+|||..+-+++..+. .+++.|..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~--~~~i~i~~ 245 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAG--AYFISING 245 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhC--CeEEEEec
Confidence 56789999999999998888877653 44554443
No 432
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.99 E-value=1.6 Score=46.04 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-+|.+++|..+.|.|||..+-.++....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3566777777799999988777666553
No 433
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.88 E-value=11 Score=37.29 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=25.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhc-------------CCCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCF-------------RDVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~-------------~~~~~~LIv~P~ 225 (666)
++|+.+.|+|||..++.++... ...+++|+++--
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 4788889999999998877643 135678888843
No 434
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.67 E-value=7.2 Score=42.69 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|+.++.|.|||..|.+++..+.
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 368999999999999999998774
No 435
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.64 E-value=16 Score=41.06 Aligned_cols=93 Identities=6% Similarity=0.110 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCc-------eEEEEECCCCHHHHHHHHHHhcC----CCCceE
Q 005980 473 PAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKV-------HCIRIDGGTPPASRQALVTEFQE----KDDVKA 540 (666)
Q Consensus 473 ~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~-------~~~~i~G~~~~~~R~~~i~~F~~----~~~~~v 540 (666)
+.|-..+.++.. -..-||+|..+-+.+..+.......|+ +-+.+....+ -.++++.|.. +.+...
T Consensus 615 ~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiL 691 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAIL 691 (821)
T ss_pred HHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEE
Confidence 334444444322 246788998888888888888877654 2222222222 3456666653 333333
Q ss_pred EEEeccccccccCccc--CCEEEEecCCCC
Q 005980 541 AVLSMKAGGVGLTLTA--ASTVIFAELSWT 568 (666)
Q Consensus 541 ~L~st~a~~~GlnL~~--a~~VI~~d~~wn 568 (666)
+-+-..-++||||+.+ |..||...+|+-
T Consensus 692 laVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 692 LAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred EEEeccccccccccccccccEEEEeecCCC
Confidence 3334456689999986 899999888874
No 436
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.54 E-value=2.8 Score=43.41 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=82.4
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
....+.|..-+..++..+..++++.+||+|||....+++.......+++.+==+. | +.++..+......
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~-------E----~~~~~~n~~~l~~ 194 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTP-------E----LKLPHENWVQLVT 194 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccc-------c----ccCCCCCEEEEEe
Confidence 4677788888888889999999999999999999999998887777776663221 0 0011112211111
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEE
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYAL 331 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~l 331 (666)
..+... ..-++.++.+.... ..+.+.+|++|.+-- .. ...+... ...+
T Consensus 195 r~~~~~-------------------~~~v~~~dll~aal----R~rPd~IivgEvrg~---e~--~~~~~a~--~tGh-- 242 (312)
T COG0630 195 REGESG-------------------SSEVSLEDLLRAAL----RQRPDYIIVGELRGR---EA--FVLFQAM--QTGH-- 242 (312)
T ss_pred cCCCCC-------------------ccccCHHHHHHHHH----hcCCCeEEEeeeecH---HH--HHHHHHH--hcCC--
Confidence 100000 11244555554332 468999999997532 21 1112222 4455
Q ss_pred EeeccCCCCChHHHHHHHHH
Q 005980 332 LLSGTPALSRPIELFKQLEA 351 (666)
Q Consensus 332 lLTgTP~~n~~~el~~~l~~ 351 (666)
+-=+|..-.++.+++..+..
T Consensus 243 ~~isT~ha~s~~~~~~rl~~ 262 (312)
T COG0630 243 GTISTIHADSPELVLDRLTE 262 (312)
T ss_pred CceeEEecCCHHHHHHHHhh
Confidence 44457777788888777764
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.46 E-value=9.4 Score=41.87 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-C-C-CcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-D-V-WPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~-~-~~~LIv~ 223 (666)
|+-+.|..++|.|||.++..++..+. . . .++.+|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 33456788999999999988887662 2 2 3555544
No 438
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=83.46 E-value=3.2 Score=47.66 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=92.6
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
..++|+|.+..++.+.+.+..|+.+||...-+.....+...|+.+ |.++..+|++.+..+|.+.-.+...|+. ++ ++
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~-~v-VI 301 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA-RV-VI 301 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc-eE-EE
Confidence 457899999999999999999999999999998888888888776 8899999999999999999999999983 44 44
Q ss_pred eccccccccCcccCCEEEEecCCCCc-----chhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHH
Q 005980 544 SMKAGGVGLTLTAASTVIFAELSWTP-----GDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIV 603 (666)
Q Consensus 544 st~a~~~GlnL~~a~~VI~~d~~wnp-----~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i 603 (666)
.++.+= =.-+.+...||+.+-+-+. .-..+|.+=+...++..++.|.-=-+.-|+|...
T Consensus 302 GtRSAl-F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~ 365 (730)
T COG1198 302 GTRSAL-FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYA 365 (730)
T ss_pred Eechhh-cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHH
Confidence 444421 1234456666664433211 0011233323333344445554444455566543
No 439
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=9.8 Score=38.85 Aligned_cols=68 Identities=26% Similarity=0.295 Sum_probs=45.4
Q ss_pred hhhhhcCchHHHHHHHHHHHc--------CCCeeeecCCCCcHHHHHHHHHHhcC------CCCcEEEEeCC-cchHHHH
Q 005980 168 AHIESKLLPFQRDGVRFALQH--------GGRILLADEMGLGKTIQAIAVATCFR------DVWPVLILTPS-SLRLHWA 232 (666)
Q Consensus 168 ~~~~~~L~p~Q~~~v~~~~~~--------~~~~iLad~~GlGKTi~ala~~~~~~------~~~~~LIv~P~-sl~~qW~ 232 (666)
.+++..|+.|=..++.+.-.+ ++=++|-.++|+|||-..=|++..+. ...-.||=.-+ ++...|-
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF 227 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH
Confidence 445667788877777766443 44467889999999988777777551 13345655555 6777775
Q ss_pred HHH
Q 005980 233 AMI 235 (666)
Q Consensus 233 ~e~ 235 (666)
.|=
T Consensus 228 sES 230 (423)
T KOG0744|consen 228 SES 230 (423)
T ss_pred hhh
Confidence 553
No 440
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=83.29 E-value=1.2 Score=41.03 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=32.7
Q ss_pred HHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhc--ceEEEeeccCCCCChHHHH
Q 005980 291 NILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKA--QYALLLSGTPALSRPIELF 346 (666)
Q Consensus 291 ~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~--~~~llLTgTP~~n~~~el~ 346 (666)
..+....+|+||+||.=..-+.+--....+..++... ..-+.|||--.+..+.|+.
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3445668999999998766443333333344444322 2249999976544444443
No 441
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=82.96 E-value=3.1 Score=42.10 Aligned_cols=40 Identities=33% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~q 230 (666)
..+++|..+.|.|||++|=++++.+. -..|+++-+.+++.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg--~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMG--VNFLKVVSSALVDK 205 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcC--CceEEeeHhhhhhh
Confidence 56889999999999999999988764 44566655555543
No 442
>PRK11054 helD DNA helicase IV; Provisional
Probab=82.93 E-value=2.4 Score=48.81 Aligned_cols=65 Identities=25% Similarity=0.188 Sum_probs=44.5
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCCcchHH-HHHHHHHHh
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPSSLRLH-WAAMIQQWL 239 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~sl~~q-W~~e~~~~~ 239 (666)
..|.|-|+++|.... + .+++....|+|||.++++-+.++- ....+|+++.+.-..+ ..+.+...+
T Consensus 195 ~~L~~~Q~~av~~~~--~-~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNGE--D-SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCCC--C-CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 469999999997532 3 344444599999999998876653 2346999999954433 444466554
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.91 E-value=2.2 Score=44.15 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
+.+.+.++++.+..++++.++|+|||...-+++..+.....++++
T Consensus 133 ~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 133 IKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 456677888888899999999999999887777766554454433
No 444
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=82.70 E-value=37 Score=33.26 Aligned_cols=119 Identities=20% Similarity=0.320 Sum_probs=77.3
Q ss_pred ChhhhhcCchHHHHHHH-HHHHcCCCeeeecCCCCcHH--HHHHHHHHh----cCCCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 167 PAHIESKLLPFQRDGVR-FALQHGGRILLADEMGLGKT--IQAIAVATC----FRDVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 167 p~~~~~~L~p~Q~~~v~-~~~~~~~~~iLad~~GlGKT--i~ala~~~~----~~~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
|-.+..++-|--.+-|. |....||++-+-. ||+-=- ++|-|++.. |.+...+||++-+ .=+..|.+-+...
T Consensus 133 PWqLRRtfe~~hae~v~~WFF~qGGRGA~~S-~GSRlqNiLvasa~isIL~~LYGdr~~tLVLA~~PERLGEWRRGLQDc 211 (283)
T PF11285_consen 133 PWQLRRTFEPIHAERVEDWFFNQGGRGAQRS-MGSRLQNILVASAAISILGELYGDRFQTLVLANSPERLGEWRRGLQDC 211 (283)
T ss_pred hHHHHhcccHHHHHHHHHHHhccCCCccccc-ccchHHHHHHHHHHHHHHHHHhccceeeeeecCChhHHHHHHHHHHHh
Confidence 44556667777777775 6667777765544 665432 333334433 2456789999988 5688999999999
Q ss_pred hcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc-CCccEEEEcCccccCC
Q 005980 239 LNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMS-SNFKIVIADESHFLKN 311 (666)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~-~~~~~vIiDEaH~~kn 311 (666)
+|+...+. .+..+.|..-+.+.+....+.+.. ...-+||||++..--+
T Consensus 212 LGi~R~DF-------------------------GP~~GivLFE~~daL~qrADRL~~~~~lPlIiID~aE~~v~ 260 (283)
T PF11285_consen 212 LGISREDF-------------------------GPNSGIVLFERPDALIQRADRLEERGELPLIIIDAAEEQVS 260 (283)
T ss_pred hCCCcccc-------------------------CCCcceEEeeCcHHHHHHHHHHHhcCCCCEEEEccchhhcc
Confidence 87653211 122344556778888777776644 4567999999875533
No 445
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=82.59 E-value=1.3 Score=41.36 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=20.9
Q ss_pred CccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccC
Q 005980 297 NFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 297 ~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP 337 (666)
..|++|||||=.+.-+ .+..++ +...++++|.|-
T Consensus 90 ~~DlliVDEAAaIp~p------~L~~ll-~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAIPLP------LLKQLL-RRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS-HH------HHHHHH-CCSSEEEEEEEB
T ss_pred CCCEEEEechhcCCHH------HHHHHH-hhCCEEEEEeec
Confidence 4699999999877332 223332 455677778885
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=82.48 E-value=3.9 Score=40.79 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=21.0
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+|.++++-.+.|.|||..+-.++..+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4577788888899999977666665543
No 447
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=82.15 E-value=3 Score=40.97 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=24.5
Q ss_pred CccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCC
Q 005980 297 NFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSR 341 (666)
Q Consensus 297 ~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~ 341 (666)
.++.+|+||++.+....-.. +..+ .....+.|-|=|.|..
T Consensus 62 ~~~~liiDE~~~~~~g~l~~---l~~~--~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLL---LLSL--SPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChHHHHH---HHhh--ccCcceEEEECchhcc
Confidence 58999999999885432211 2222 2223566678887654
No 448
>PRK10436 hypothetical protein; Provisional
Probab=82.15 E-value=3.2 Score=45.37 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=35.6
Q ss_pred cCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhcCCCCc
Q 005980 173 KLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFRDVWP 218 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~~~~~~ 218 (666)
.+.|.|.+.+..++.. +|-+|++.+||+|||.+.-+++..+.....
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~ 247 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQI 247 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCC
Confidence 4778899999888754 455789999999999988887777654333
No 449
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=81.82 E-value=5.9 Score=40.95 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 182 VRFALQHG--GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 182 v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++-+++.+ ...||..+.|.|||-.|=.++..-+
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC
Confidence 34455543 2679999999999998877766544
No 450
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=81.81 E-value=4.2 Score=42.11 Aligned_cols=50 Identities=18% Similarity=0.024 Sum_probs=34.5
Q ss_pred HHHHHHHH-c----CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchH
Q 005980 180 DGVRFALQ-H----GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRL 229 (666)
Q Consensus 180 ~~v~~~~~-~----~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~ 229 (666)
.++..++. . |.-+.++.+.|+|||..++.++... +..+++++|.+.....
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 45666654 1 2235688999999999999877654 4567888887764443
No 451
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=81.77 E-value=5.8 Score=38.72 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=29.5
Q ss_pred cCCCCcHHHHHHHHHHhcC-CCCcEEEEe--CCcchHHHHHHHH
Q 005980 196 DEMGLGKTIQAIAVATCFR-DVWPVLILT--PSSLRLHWAAMIQ 236 (666)
Q Consensus 196 d~~GlGKTi~ala~~~~~~-~~~~~LIv~--P~sl~~qW~~e~~ 236 (666)
.-=|.|||-.+++++..+. +..++.||= |+.-+..|.+-..
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcc
Confidence 3458999999999998874 456777763 6666778965443
No 452
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=81.67 E-value=8.9 Score=35.75 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=34.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
.++...+|+|||.-|..++.. ...+++.++.. ..=..|+..+.++-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~--~~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE--LGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh--cCCCeEEEEccCcCCHHHHHHHHHHH
Confidence 366778999999999988776 34678888776 45556887777764
No 453
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=81.61 E-value=15 Score=38.32 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.|+..+.|.|||..|..++..+.
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 48999999999999999988764
No 454
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=81.51 E-value=1.9 Score=46.34 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.++++|..++|+|||..|-+++..+. .|+..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILD--VPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC--CCceec
Confidence 35789999999999999988887653 454443
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.33 E-value=11 Score=43.53 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC--CC-CcEEEEeCCc----chHHHHHHHHHHhcCCCCcEEEEEecCCCCCccce
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR--DV-WPVLILTPSS----LRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGF 261 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~--~~-~~~LIv~P~s----l~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~ 261 (666)
++-+.|..++|.|||.++..++..+. .. .++.+|+-.. ..+||.. +.+..+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~-~a~~~gvpv------------------ 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRI-YGRILGVPV------------------ 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHH-HHHhCCCCc------------------
Confidence 33456889999999999887776652 22 3566665432 2455532 222222211
Q ss_pred eEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhh---hhhcceEEEeeccCC
Q 005980 262 TIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI---IKKAQYALLLSGTPA 338 (666)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l---~~~~~~~llLTgTP~ 338 (666)
+++.+.+.+.+....+. ++++||||=+=+..+... ....+..+ .......+.|++|--
T Consensus 246 ----------------~~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 246 ----------------HAVKDAADLRFALAALG--DKHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ----------------cccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCc
Confidence 11224445544444432 569999999876643322 22222222 123456688899964
Q ss_pred CCChHHHHHHHH
Q 005980 339 LSRPIELFKQLE 350 (666)
Q Consensus 339 ~n~~~el~~~l~ 350 (666)
...+.++...++
T Consensus 307 ~~~l~~i~~~f~ 318 (767)
T PRK14723 307 GDTLNEVVHAYR 318 (767)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 456
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=80.81 E-value=13 Score=44.61 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=83.9
Q ss_pred hcCCccccHHHHHHHHHHHHHcCCEEEEEeccHH----HHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQP----MLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~----~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
+.+-+-+|.+..+.-.-....+|+.|.|.+..+- +.+.+.+.+...++++..++--.+.++..++++...+|. +-
T Consensus 621 CGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~-vD 699 (1139)
T COG1197 621 CGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK-VD 699 (1139)
T ss_pred ecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC-cc
Confidence 4455678999888888877789999999998764 456677777777899999999999999999999999998 34
Q ss_pred EEEEeccccccccCcccCCEEEEecCCCCcchhhhhhh
Q 005980 540 AAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAED 577 (666)
Q Consensus 540 v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~g 577 (666)
+++.+=+.++.++-+.+.-.+|+ +++||.|
T Consensus 700 IvIGTHrLL~kdv~FkdLGLlII--------DEEqRFG 729 (1139)
T COG1197 700 IVIGTHRLLSKDVKFKDLGLLII--------DEEQRFG 729 (1139)
T ss_pred EEEechHhhCCCcEEecCCeEEE--------echhhcC
Confidence 44445567788888888888876 5677777
No 457
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=80.61 E-value=6.1 Score=37.06 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh--hcceEEEeeccCCCCChHHHHHHHHHhC
Q 005980 291 NILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK--KAQYALLLSGTPALSRPIELFKQLEALY 353 (666)
Q Consensus 291 ~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~--~~~~~llLTgTP~~n~~~el~~~l~~l~ 353 (666)
..+....|++||+||.-..-..+.--...+..++. ....-+.+||.-.+..+.|+..++.-+.
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm~ 180 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEMR 180 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhcc
Confidence 34566689999999986554433222233333332 2233489999766666666666655443
No 458
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=80.54 E-value=3.9 Score=42.90 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
+-+.+.+-+..+++.+++++++..+|+|||...-+++..+.....++++
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~i 211 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLV 211 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEE
Confidence 4467777787888888899999999999998877777666555554444
No 459
>PRK12608 transcription termination factor Rho; Provisional
Probab=80.43 E-value=4.7 Score=42.47 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=29.2
Q ss_pred hHHHHHHHHHH--HcCCCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 176 PFQRDGVRFAL--QHGGRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 176 p~Q~~~v~~~~--~~~~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
+.-..++..+. .+|.+++|..+.|+|||..+..++..+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445666665 45778888888999999998887776643
No 460
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.38 E-value=2.9 Score=45.99 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=45.8
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-------CCCCcEEEEeCCcchHHHHHHHHHHh
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-------RDVWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-------~~~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
.++.+-|-+.+++= +++-.++-...|+|||-+|+-=.+++ ...+++||+.|+.+.......+---+
T Consensus 211 ~TIQkEQneIIR~e--k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 211 ETIQKEQNEIIRFE--KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred HHhhHhHHHHHhcc--CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 35666777777653 24456777889999999998655544 13667999999988766655544433
No 461
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.18 E-value=12 Score=40.48 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHhc---CCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 198 MGLGKTIQAIAVATCF---RDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 198 ~GlGKTi~ala~~~~~---~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
-|+|||+.-..=++.+ +..++++|-+=+ +|..+..+-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 6999998755444443 347789999887 67777777777765
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=79.84 E-value=4.2 Score=46.73 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=26.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s 226 (666)
..+++|..++|+|||..+-+++..+. .|++.+.+..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~ 220 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSD 220 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHH
Confidence 45789999999999999888877654 4555554443
No 463
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=79.69 E-value=4.2 Score=41.92 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=39.5
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
..+-+.|.+.+..+.+...++|++..||+|||...=++..+.....+++.+
T Consensus 156 gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvIti 206 (355)
T COG4962 156 GTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITI 206 (355)
T ss_pred CCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEE
Confidence 356677777777777766689999999999999887777776656666665
No 464
>PF13479 AAA_24: AAA domain
Probab=79.68 E-value=4.5 Score=39.30 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=23.5
Q ss_pred EEEEeHHHHHHHHHHH--hcCCccEEEEcCcccc
Q 005980 278 FNIISYDVVLKLQNIL--MSSNFKIVIADESHFL 309 (666)
Q Consensus 278 v~I~sy~~l~~~~~~l--~~~~~~~vIiDEaH~~ 309 (666)
+.|.+|+.+......+ ....|+.||||-.-.+
T Consensus 47 i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 47 IPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 4467999888866655 3458999999986544
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=79.56 E-value=5 Score=42.61 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=22.6
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
..|.+++|..+.|+|||..+-.++..+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 45777888888999999888777776543
No 466
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=79.44 E-value=2.3 Score=40.74 Aligned_cols=29 Identities=41% Similarity=0.458 Sum_probs=21.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.++..+||+|||-.|++++..+. +|+++.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTG--APVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH----EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhC--CCEEEe
Confidence 36788999999999999998764 666655
No 467
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=78.96 E-value=15 Score=35.58 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=24.6
Q ss_pred HHHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 180 DGVRFALQH--GGRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 180 ~~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
+.+..++.. +..++|..+-|+|||-..-.++.....
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 334434433 356788889999999988888877643
No 468
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=78.88 E-value=5.6 Score=44.94 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=34.7
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
..+.|.|.+.+..++.. .|-++++.+||+|||.+..+++..+..
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45778899999888764 445679999999999988777776643
No 469
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=78.74 E-value=16 Score=35.61 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc-CCC------CcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF-RDV------WPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~-~~~------~~~LIv~P~s 226 (666)
|.-..|+.+.|+|||..++.++... ... .+++.+....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3346788899999999999887654 333 6777777663
No 470
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.60 E-value=14 Score=39.46 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=52.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHH---HHHHhcCCCCcEEEEEecCCCCCccceeEEecC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAM---IQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSN 267 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 267 (666)
++++.=-|+|||.++.-++.++++ ..++|+||-..-..--.++ +.+-.+++. + .. +..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f-~~--~~~---------- 164 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----F-GS--GTE---------- 164 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCce-----e-cC--CCC----------
Confidence 566777899999999999998865 4456666654333333333 333333221 1 00 000
Q ss_pred CCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCC
Q 005980 268 TKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 268 ~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn 311 (666)
. ..-+....-...+....+|+||+|=|-++.-
T Consensus 165 --~----------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i 196 (451)
T COG0541 165 --K----------DPVEIAKAALEKAKEEGYDVVIVDTAGRLHI 196 (451)
T ss_pred --C----------CHHHHHHHHHHHHHHcCCCEEEEeCCCcccc
Confidence 0 0122344555566667899999999977754
No 471
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=78.32 E-value=16 Score=36.39 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=23.3
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+++++.+|+|||..|-.++..+.. ..++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 467888999999999998887743 3345554
No 472
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=78.30 E-value=2 Score=42.90 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=27.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVL 220 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~L 220 (666)
|+.++||.++|+|||..|+++...+...-|+.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFc 95 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFC 95 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcc
Confidence 66789999999999999999999987666653
No 473
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=7.6 Score=45.50 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHH---c----------CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHHHHhcCC
Q 005980 176 PFQRDGVRFALQ---H----------GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 176 p~Q~~~v~~~~~---~----------~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~~~~~~~ 242 (666)
++|.+||..+.+ + ..-.++..++|.|||-.|.+++.++....+.+|-+=-+-..+ ..+.++.|
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e----vskligsp 640 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE----VSKLIGSP 640 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh----hhhccCCC
Confidence 478888875421 1 224688899999999999999999987777766654332211 44444322
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCcccc
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFL 309 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~ 309 (666)
+. ..-|+........+....|.+|.+||....
T Consensus 641 ~g-----------------------------------yvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 641 PG-----------------------------------YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred cc-----------------------------------cccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 21 223455556666777788999999987644
No 474
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=78.05 E-value=3.5 Score=38.52 Aligned_cols=34 Identities=35% Similarity=0.266 Sum_probs=26.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
.++++.++|.|||..|-+++..+. .....++++-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 578999999999999999999887 4555555543
No 475
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=77.64 E-value=23 Score=34.53 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=32.6
Q ss_pred HHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC
Q 005980 179 RDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS 225 (666)
Q Consensus 179 ~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~ 225 (666)
..++..++.. |.-.+++.++|+|||..++.++... ....+++.|.-.
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3456666642 2235889999999999999887754 345677777544
No 476
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=77.58 E-value=3.1 Score=46.09 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cc----hHHHHHHHHHHhcCCCCcEEEEEecCCCCCcccee
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SL----RLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFT 262 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl----~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 262 (666)
.+.|. +=--|||...+++++.+. .+-.+..++.- .+ ...-...+.+|++-. .+... ++-.
T Consensus 205 TVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~--~vi~~---------k~~t 272 (668)
T PHA03372 205 TVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK--HTIEN---------KDNV 272 (668)
T ss_pred eEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc--ceeee---------cCcE
Confidence 34454 377899988777666543 34567777764 22 333455677887522 22111 1111
Q ss_pred EEecCCCCCCCCCCcEEEEe-HHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh-hcceEEEeecc
Q 005980 263 IVSSNTKRNIPLDGLFNIIS-YDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK-KAQYALLLSGT 336 (666)
Q Consensus 263 ~~~~~~~~~~~~~~~v~I~s-y~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~-~~~~~llLTgT 336 (666)
+..+..... ..+...| ++ .+.+....|+++++||||.++...-. .++.++. +....+..|.|
T Consensus 273 I~~s~pg~K----st~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~---tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 273 ISIDHRGAK----STALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFN---TILGFLAQNTTKIIFISST 336 (668)
T ss_pred EEEecCCCc----ceeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHH---HhhhhhcccCceEEEEeCC
Confidence 111111000 0011111 22 23456778999999999999764333 3333332 44555666644
No 477
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=77.33 E-value=3.4 Score=40.54 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh-cCC-CCcEEEEeCCcchHHHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC-FRD-VWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~-~~~-~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
|.-++++.++|+|||+.++-++.. +.+ ..+++.|+-..-..+..+.+..+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHc
Confidence 445688999999999999987754 455 78899998766666666666644
No 478
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.09 E-value=28 Score=39.67 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcC---CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 178 QRDGVRFALQHG---GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 178 Q~~~v~~~~~~~---~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.+..+++.| ...|+.++.|.|||..|..++..+.
T Consensus 25 ~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 25 LTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444555543 2368999999999999988888764
No 479
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=76.98 E-value=4.5 Score=42.85 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 182 VRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 182 v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++++...+|.++++.+||+|||...-+++.++.
T Consensus 142 ~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 142 FNSLLPAAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445566677889999999999999888877764
No 480
>PRK05973 replicative DNA helicase; Provisional
Probab=76.91 E-value=4.4 Score=39.99 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=33.6
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
.|.-++|+..+|+|||..++.++... .+..+++++.-..-..+-.+.+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 35567889999999999999877644 55678888875533333333333
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.77 E-value=3.6 Score=36.61 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
+.-++|..++|+|||..+-+++..+.-.. -|-.|+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~~--~v~SPT 56 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQG--NVTSPT 56 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCC--cccCCC
Confidence 44567889999999999888888775322 355666
No 482
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=76.74 E-value=16 Score=36.93 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=30.2
Q ss_pred cCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCC
Q 005980 295 SSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPA 338 (666)
Q Consensus 295 ~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~ 338 (666)
.....+||+|||.++.-.. ...+..+..++.--+.|.|+|.
T Consensus 163 ~~~~~~iivDEA~~L~~~a---le~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA---LEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred ccCcceeeeehhhccChHH---HHHHHHHHHhhCceEEEecChH
Confidence 4467899999999996543 3344444447888899999993
No 483
>PRK09354 recA recombinase A; Provisional
Probab=76.43 E-value=9.4 Score=39.96 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=33.8
Q ss_pred HHHHHHHH-c----CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchH
Q 005980 180 DGVRFALQ-H----GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRL 229 (666)
Q Consensus 180 ~~v~~~~~-~----~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~ 229 (666)
.++..++. . |.-+.+..+.|+|||..++.++... +..++++.|..-.-..
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 45556654 2 2235688999999999998776644 4567788777664444
No 484
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=17 Score=38.44 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=32.9
Q ss_pred cCchHHHHHHHHHHH------cCCCeeeecCCCCcHHHHHHHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQ------HGGRILLADEMGLGKTIQAIAVATCFRDV 216 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~------~~~~~iLad~~GlGKTi~ala~~~~~~~~ 216 (666)
.-|.-|.+.+...+. .+.++++...+|+|||.++-.++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 356678887775543 13358899999999999999988887643
No 485
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=76.31 E-value=8.4 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++|..++|+|||..|-+++..+.
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999988774
No 486
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=76.14 E-value=9.8 Score=35.43 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHH
Q 005980 183 RFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHW 231 (666)
Q Consensus 183 ~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW 231 (666)
+.+......++|..|+|+||+..|=++-.... ..+|++.|-...+-..+
T Consensus 16 ~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 16 KRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHH
T ss_pred HHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcch
Confidence 33444567899999999999999888766543 46788888777775544
No 487
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=75.94 E-value=32 Score=35.62 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 176 PFQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+...+.+..+++.+. ..|+.++-|.|||..|.+++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 344555555555332 348999999999999999988764
No 488
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=75.91 E-value=15 Score=37.37 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=30.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCC-cch-----HHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPS-SLR-----LHWAAMIQQ 237 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~-sl~-----~qW~~e~~~ 237 (666)
+++-.+||+||+--.=.++..-. ....+.+|+|. ..+ .-|..++.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~E 144 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCE 144 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHh
Confidence 46778999999965444444321 24458999997 443 348887765
No 489
>PRK13531 regulatory ATPase RavA; Provisional
Probab=75.30 E-value=5.5 Score=43.44 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
+-.+.+..++..++.++|.+++|+|||..|-+++.....
T Consensus 27 ~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 27 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 344444444556889999999999999999998886644
No 490
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=74.92 E-value=3.6 Score=36.02 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
+.|.=++|-.++|+|||.-+=+++..+.... -|..|+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~--~V~SPT 49 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE--EVTSPT 49 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S------TT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC--CcCCCC
Confidence 3344467788999999998888888875333 667777
No 491
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=74.74 E-value=6.5 Score=38.90 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=38.9
Q ss_pred HHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCCcchHHHHHHHH
Q 005980 179 RDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 179 ~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
..++..++. .|.-++++.++|+|||..++-++.. +.+..+++.|+-..-..+-.+.+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHH
Confidence 345555553 3445788999999999999987765 356778888875544444333333
No 492
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=74.66 E-value=8.8 Score=34.27 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHcCCCeeeecCCCCcHHHHHHHHHHh
Q 005980 184 FALQHGGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 184 ~~~~~~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
.+...+..++|..|.|+||+..|-++...
T Consensus 16 ~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 16 RLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp HHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred HHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 34455678999999999999977655444
No 493
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=74.54 E-value=5.9 Score=43.78 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
.+|+||-.++|+|||..|=|++..+. -|++=|.-+.++
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeiv 260 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIV 260 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhh
Confidence 56889999999999999999888765 566655444444
No 494
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=74.48 E-value=7.4 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.|--...+...+..++.++|.+.+|+|||..+-.++..+. +|++-|
T Consensus 50 ~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~--~~~~rV 95 (327)
T TIGR01650 50 DKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN--WPCVRV 95 (327)
T ss_pred CHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC--CCeEEE
Confidence 3334455555556678899999999999999999998876 555544
No 495
>PRK08760 replicative DNA helicase; Provisional
Probab=74.20 E-value=4.2 Score=44.81 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCCcchHHHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
|.=++||..+|+|||..++.++... ....+++++..-.-..||...+...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 3345889999999999999888754 3467899998876677777766544
No 496
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=74.19 E-value=26 Score=36.78 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHhcCCccEEEEcCccccCChh
Q 005980 291 NILMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 291 ~~l~~~~~~~vIiDEaH~~kn~~ 313 (666)
..+....+++||+||+-.+....
T Consensus 91 ~~~~G~~~~~i~iDE~~~~~~~~ 113 (384)
T PF03237_consen 91 DNIRGFEYDLIIIDEAAKVPDDA 113 (384)
T ss_dssp HHHHTS--SEEEEESGGGSTTHH
T ss_pred ccccccccceeeeeecccCchHH
Confidence 34556789999999988886643
No 497
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.43 E-value=13 Score=41.09 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHh-cCC-CCcEEEEeCCcchHHHHHHHHHH
Q 005980 179 RDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATC-FRD-VWPVLILTPSSLRLHWAAMIQQW 238 (666)
Q Consensus 179 ~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~-~~~-~~~~LIv~P~sl~~qW~~e~~~~ 238 (666)
..++..++. +|.-.++..++|+|||+-|+-++.. ..+ ..++|.|+-..-..++.+.+..+
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 345666654 3455789999999999999988764 344 57899998665556666655554
No 498
>PHA00012 I assembly protein
Probab=73.25 E-value=3.9 Score=41.86 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.2
Q ss_pred eeecCCCCcHHHHHHHHHHhcCCCCc
Q 005980 193 LLADEMGLGKTIQAIAVATCFRDVWP 218 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~~~~ 218 (666)
++...+|+|||+.|++-+......+.
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcCC
Confidence 56677999999999975554433443
No 499
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=73.05 E-value=7.1 Score=38.27 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCCcchHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~sl~~qW~~e 234 (666)
|.-++++.++|+|||..++.++. .+....+++.+.-.....+....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH
Confidence 44568899999999999987664 33456678888765444444444
No 500
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=72.93 E-value=5.5 Score=40.35 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=27.9
Q ss_pred HHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCC
Q 005980 182 VRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVW 217 (666)
Q Consensus 182 v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~ 217 (666)
+..++..+..++|+.++|+|||..+-.++..+....
T Consensus 26 l~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~ 61 (272)
T PF12775_consen 26 LDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDK 61 (272)
T ss_dssp HHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCC
T ss_pred HHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccc
Confidence 344556788899999999999999888777655443
Done!