Query 005980
Match_columns 666
No_of_seqs 372 out of 2876
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 9.3E-69 3.2E-73 608.3 32.1 451 166-623 48-554 (644)
2 3mwy_W Chromo domain-containin 100.0 1.1E-66 3.9E-71 605.7 33.1 436 171-621 234-708 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 4.4E-65 1.5E-69 565.5 31.0 429 167-623 31-479 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.5E-51 8.6E-56 483.4 22.9 434 171-626 151-644 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 3.9E-45 1.3E-49 403.1 30.6 419 172-615 8-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 9.2E-43 3.2E-47 383.3 23.4 415 102-614 41-471 (472)
7 2oca_A DAR protein, ATP-depend 100.0 6.3E-37 2.2E-41 340.2 32.3 398 106-600 45-461 (510)
8 4a2p_A RIG-I, retinoic acid in 100.0 5E-37 1.7E-41 344.8 27.3 425 172-620 6-530 (556)
9 3tbk_A RIG-I helicase domain; 100.0 3.5E-36 1.2E-40 337.6 31.7 427 172-619 3-528 (555)
10 4a2w_A RIG-I, retinoic acid in 100.0 3.8E-36 1.3E-40 353.9 31.0 425 171-620 246-771 (936)
11 4a2q_A RIG-I, retinoic acid in 100.0 5.7E-36 1.9E-40 348.9 30.6 428 171-620 246-771 (797)
12 1z5z_A Helicase of the SNF2/RA 100.0 7.4E-37 2.5E-41 308.4 18.4 231 393-623 12-250 (271)
13 4gl2_A Interferon-induced heli 100.0 5.3E-34 1.8E-38 329.0 25.5 420 172-619 6-541 (699)
14 1xti_A Probable ATP-dependent 100.0 6E-33 2E-37 297.4 28.7 329 173-610 30-369 (391)
15 2ykg_A Probable ATP-dependent 100.0 3.7E-33 1.3E-37 321.7 28.9 413 172-602 12-521 (696)
16 1hv8_A Putative ATP-dependent 100.0 3.9E-33 1.3E-37 295.9 22.5 321 173-609 28-355 (367)
17 1s2m_A Putative ATP-dependent 100.0 1.7E-32 5.8E-37 294.9 26.8 325 173-609 43-375 (400)
18 3h1t_A Type I site-specific re 100.0 3.2E-33 1.1E-37 315.6 21.3 346 171-594 176-558 (590)
19 2j0s_A ATP-dependent RNA helic 100.0 1.9E-32 6.3E-37 295.6 23.8 317 173-597 59-383 (410)
20 3pey_A ATP-dependent RNA helic 100.0 9.9E-32 3.4E-36 288.0 27.9 310 172-590 26-351 (395)
21 2z0m_A 337AA long hypothetical 100.0 1.2E-32 4.2E-37 288.6 18.0 316 173-608 16-335 (337)
22 3eiq_A Eukaryotic initiation f 100.0 4.6E-32 1.6E-36 292.8 19.2 318 173-597 62-387 (414)
23 3fht_A ATP-dependent RNA helic 100.0 2.7E-30 9.2E-35 278.7 30.9 329 172-611 46-392 (412)
24 2db3_A ATP-dependent RNA helic 100.0 1.2E-30 4.1E-35 283.0 26.0 313 173-595 78-405 (434)
25 1fuu_A Yeast initiation factor 100.0 2.6E-32 9E-37 292.6 9.1 315 173-597 43-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 2.7E-30 9.2E-35 279.2 22.2 318 172-597 36-383 (417)
27 3oiy_A Reverse gyrase helicase 100.0 2.5E-28 8.4E-33 263.7 27.3 322 172-614 20-378 (414)
28 1oyw_A RECQ helicase, ATP-depe 100.0 6.1E-29 2.1E-33 274.9 22.5 306 173-590 25-338 (523)
29 3sqw_A ATP-dependent RNA helic 100.0 1.9E-28 6.4E-33 275.7 24.2 337 173-609 43-408 (579)
30 3fho_A ATP-dependent RNA helic 100.0 2.2E-29 7.4E-34 278.4 13.8 310 173-591 141-466 (508)
31 3i5x_A ATP-dependent RNA helic 100.0 6.5E-28 2.2E-32 270.9 24.5 338 172-609 93-459 (563)
32 2v1x_A ATP-dependent DNA helic 100.0 1.1E-27 3.9E-32 267.4 25.9 312 173-591 44-370 (591)
33 3fmp_B ATP-dependent RNA helic 100.0 1.3E-28 4.5E-33 271.0 16.2 311 172-590 113-441 (479)
34 2xgj_A ATP-dependent RNA helic 100.0 1.1E-26 3.9E-31 273.1 31.9 359 172-606 85-508 (1010)
35 2eyq_A TRCF, transcription-rep 100.0 9.8E-28 3.4E-32 286.3 20.7 309 171-597 601-922 (1151)
36 3l9o_A ATP-dependent RNA helic 99.9 1.7E-25 5.8E-30 265.4 26.5 371 171-608 182-608 (1108)
37 2zj8_A DNA helicase, putative 99.9 1.4E-25 4.6E-30 258.8 22.0 322 173-601 23-391 (720)
38 1gm5_A RECG; helicase, replica 99.9 4.2E-27 1.4E-31 268.4 7.4 308 172-591 367-693 (780)
39 2va8_A SSO2462, SKI2-type heli 99.9 8.9E-25 3E-29 252.1 25.3 327 173-598 30-409 (715)
40 2p6r_A Afuhel308 helicase; pro 99.9 6.2E-25 2.1E-29 252.5 22.8 319 173-600 25-391 (702)
41 4a4z_A Antiviral helicase SKI2 99.9 3.4E-24 1.2E-28 252.1 29.4 370 170-607 36-502 (997)
42 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.6E-22 8.8E-27 234.8 30.1 341 172-595 270-707 (1038)
43 4ddu_A Reverse gyrase; topoiso 99.9 7.8E-23 2.7E-27 242.6 24.9 280 172-567 77-388 (1104)
44 3hgt_A HDA1 complex subunit 3; 99.9 3.6E-21 1.2E-25 193.3 19.4 194 406-606 20-246 (328)
45 2v6i_A RNA helicase; membrane, 99.9 1.2E-21 4.1E-26 211.5 16.3 96 485-587 170-282 (431)
46 1gku_B Reverse gyrase, TOP-RG; 99.9 1.3E-21 4.5E-26 232.3 16.9 317 174-613 58-468 (1054)
47 1rif_A DAR protein, DNA helica 99.9 3.3E-21 1.1E-25 196.4 16.3 213 116-354 59-278 (282)
48 2fz4_A DNA repair protein RAD2 99.9 1.7E-20 5.7E-25 185.6 18.6 190 102-341 41-232 (237)
49 2jlq_A Serine protease subunit 99.8 9.9E-21 3.4E-25 205.7 16.4 96 485-587 187-302 (451)
50 1yks_A Genome polyprotein [con 99.8 7.1E-21 2.4E-25 205.9 14.9 94 485-585 176-288 (440)
51 2wv9_A Flavivirin protease NS2 99.8 1.1E-20 3.8E-25 213.0 15.0 95 485-586 409-523 (673)
52 2whx_A Serine protease/ntpase/ 99.8 1.8E-20 6.1E-25 210.0 16.1 288 181-611 179-493 (618)
53 2z83_A Helicase/nucleoside tri 99.8 1.1E-20 3.7E-25 205.7 13.9 105 485-597 189-313 (459)
54 2xau_A PRE-mRNA-splicing facto 99.8 6.8E-20 2.3E-24 210.4 21.1 306 175-599 95-445 (773)
55 3o8b_A HCV NS3 protease/helica 99.8 6.9E-20 2.4E-24 203.5 13.0 275 174-599 218-516 (666)
56 1tf5_A Preprotein translocase 99.8 4.4E-19 1.5E-23 198.7 17.8 118 467-588 413-538 (844)
57 1nkt_A Preprotein translocase 99.8 2.6E-18 8.8E-23 192.1 22.6 118 467-588 441-610 (922)
58 4f92_B U5 small nuclear ribonu 99.8 7.4E-18 2.5E-22 207.1 25.3 326 172-599 78-475 (1724)
59 3rc3_A ATP-dependent RNA helic 99.8 1.3E-18 4.4E-23 195.6 15.9 107 489-596 323-444 (677)
60 2hjv_A ATP-dependent RNA helic 99.8 6.6E-19 2.3E-23 163.8 11.1 137 466-610 17-153 (163)
61 2fsf_A Preprotein translocase 99.8 4.2E-18 1.4E-22 190.2 19.4 118 467-588 422-576 (853)
62 1t5i_A C_terminal domain of A 99.8 1.7E-18 5.7E-23 162.4 13.4 136 467-609 14-149 (172)
63 4f92_B U5 small nuclear ribonu 99.8 1.7E-17 5.8E-22 203.9 25.4 323 173-597 926-1308(1724)
64 2jgn_A DBX, DDX3, ATP-dependen 99.8 1E-18 3.4E-23 165.9 9.9 126 467-597 28-153 (185)
65 1c4o_A DNA nucleotide excision 99.8 1.5E-16 5E-21 180.1 27.6 122 472-598 425-551 (664)
66 3jux_A Protein translocase sub 99.7 1.7E-16 5.7E-21 173.7 24.8 117 468-588 456-580 (822)
67 1fuk_A Eukaryotic initiation f 99.7 8.8E-18 3E-22 156.5 12.7 124 470-599 16-139 (165)
68 2p6n_A ATP-dependent RNA helic 99.7 3E-18 1E-22 163.3 9.4 124 467-597 38-161 (191)
69 2rb4_A ATP-dependent RNA helic 99.7 3.8E-17 1.3E-21 153.8 13.0 123 470-598 20-148 (175)
70 3eaq_A Heat resistant RNA depe 99.7 4.1E-17 1.4E-21 158.4 13.1 136 466-609 13-148 (212)
71 2yjt_D ATP-dependent RNA helic 99.5 6.6E-19 2.2E-23 165.0 0.0 118 469-590 15-132 (170)
72 2d7d_A Uvrabc system protein B 99.7 2.7E-15 9.2E-20 169.7 23.7 121 473-598 432-557 (661)
73 3i32_A Heat resistant RNA depe 99.7 9E-16 3.1E-20 156.2 14.8 126 466-597 10-135 (300)
74 3b6e_A Interferon-induced heli 99.6 3.3E-16 1.1E-20 152.5 10.4 154 171-336 31-216 (216)
75 1t6n_A Probable ATP-dependent 99.6 4.5E-16 1.6E-20 152.2 11.4 155 173-338 36-201 (220)
76 2pl3_A Probable ATP-dependent 99.6 5.8E-16 2E-20 153.2 12.3 153 173-337 47-212 (236)
77 1qde_A EIF4A, translation init 99.6 1.5E-15 5E-20 148.9 14.9 153 173-337 36-196 (224)
78 2gxq_A Heat resistant RNA depe 99.6 8.1E-16 2.8E-20 148.7 11.3 152 173-337 23-185 (207)
79 1q0u_A Bstdead; DEAD protein, 99.6 2.2E-15 7.4E-20 147.2 13.9 154 173-337 26-191 (219)
80 1vec_A ATP-dependent RNA helic 99.6 3.6E-15 1.2E-19 144.1 13.4 154 173-337 25-187 (206)
81 3bor_A Human initiation factor 99.6 5.5E-15 1.9E-19 146.2 13.3 155 173-337 52-214 (237)
82 2oxc_A Probable ATP-dependent 99.6 6.2E-15 2.1E-19 145.1 12.8 153 173-337 46-208 (230)
83 3ber_A Probable ATP-dependent 99.6 6.2E-15 2.1E-19 146.9 10.8 154 173-337 65-227 (249)
84 1wrb_A DJVLGB; RNA helicase, D 99.6 9.7E-15 3.3E-19 145.9 12.0 155 172-337 44-219 (253)
85 3dkp_A Probable ATP-dependent 99.6 3.5E-14 1.2E-18 141.2 14.8 155 173-337 51-220 (245)
86 3iuy_A Probable ATP-dependent 99.5 2.4E-14 8.2E-19 140.7 12.1 153 173-337 42-208 (228)
87 3ly5_A ATP-dependent RNA helic 99.5 3.3E-14 1.1E-18 142.7 10.7 154 173-337 76-242 (262)
88 3fe2_A Probable ATP-dependent 99.5 2.9E-14 9.8E-19 141.5 9.6 154 173-337 51-217 (242)
89 3fmo_B ATP-dependent RNA helic 99.4 1.8E-12 6.1E-17 132.6 16.5 153 172-337 113-277 (300)
90 2ipc_A Preprotein translocase 99.4 6.4E-12 2.2E-16 140.3 19.1 145 173-350 79-240 (997)
91 2vl7_A XPD; helicase, unknown 99.4 3E-11 1E-15 133.8 23.1 91 474-570 371-466 (540)
92 3llm_A ATP-dependent RNA helic 99.0 4.8E-09 1.6E-13 103.1 15.7 149 173-338 61-219 (235)
93 3crv_A XPD/RAD3 related DNA he 98.7 4.7E-08 1.6E-12 108.5 9.9 65 173-239 3-71 (551)
94 3lfu_A DNA helicase II; SF1 he 97.7 0.0018 6E-08 73.2 21.8 69 171-242 7-81 (647)
95 3e1s_A Exodeoxyribonuclease V, 97.5 0.00039 1.3E-08 76.9 11.9 59 171-230 187-246 (574)
96 3upu_A ATP-dependent DNA helic 97.5 0.00037 1.3E-08 75.2 10.5 57 172-228 24-86 (459)
97 1w36_D RECD, exodeoxyribonucle 97.1 0.0011 3.8E-08 73.9 9.9 63 175-238 151-219 (608)
98 2gk6_A Regulator of nonsense t 97.0 0.0021 7.3E-08 72.0 11.0 65 172-237 179-246 (624)
99 2orv_A Thymidine kinase; TP4A 97.0 0.0018 6.1E-08 61.9 8.7 34 192-225 22-56 (234)
100 2o0j_A Terminase, DNA packagin 97.0 0.0084 2.9E-07 62.4 14.5 148 172-340 162-316 (385)
101 4a15_A XPD helicase, ATP-depen 96.8 0.0014 4.7E-08 73.3 7.3 67 173-239 3-75 (620)
102 2b8t_A Thymidine kinase; deoxy 96.8 0.0011 3.9E-08 63.5 5.4 37 189-225 12-49 (223)
103 2j9r_A Thymidine kinase; TK1, 96.8 0.0019 6.4E-08 61.1 6.4 33 193-225 32-65 (214)
104 3cpe_A Terminase, DNA packagin 96.6 0.02 6.9E-07 63.6 14.9 150 172-340 162-316 (592)
105 4b3f_X DNA-binding protein smu 96.6 0.0028 9.5E-08 71.4 7.8 69 170-238 186-256 (646)
106 3vkw_A Replicase large subunit 96.5 0.0032 1.1E-07 66.4 6.9 106 193-339 165-271 (446)
107 1a5t_A Delta prime, HOLB; zinc 96.5 0.019 6.5E-07 58.8 12.3 41 174-214 3-49 (334)
108 1l8q_A Chromosomal replication 96.2 0.026 8.8E-07 57.5 11.8 42 190-231 38-80 (324)
109 2orw_A Thymidine kinase; TMTK, 96.2 0.0011 3.9E-08 61.7 1.2 34 192-225 6-40 (184)
110 1xx6_A Thymidine kinase; NESG, 96.2 0.011 3.9E-07 55.1 8.0 34 192-225 11-45 (191)
111 2p65_A Hypothetical protein PF 96.1 0.011 3.6E-07 54.5 7.6 26 189-214 43-68 (187)
112 3eie_A Vacuolar protein sortin 96.0 0.012 4.2E-07 60.0 7.9 37 190-228 52-88 (322)
113 3ec2_A DNA replication protein 95.9 0.041 1.4E-06 50.6 10.4 56 176-231 17-82 (180)
114 3co5_A Putative two-component 95.8 0.012 4.1E-07 52.1 6.0 27 186-212 24-50 (143)
115 3h4m_A Proteasome-activating n 95.8 0.022 7.7E-07 56.7 8.5 36 188-225 50-85 (285)
116 1jbk_A CLPB protein; beta barr 95.8 0.042 1.4E-06 50.5 9.9 39 176-214 28-68 (195)
117 4a15_A XPD helicase, ATP-depen 95.7 0.021 7.2E-07 63.7 8.9 112 473-590 434-579 (620)
118 3syl_A Protein CBBX; photosynt 95.7 0.0089 3E-07 60.4 5.3 24 191-214 69-92 (309)
119 2qp9_X Vacuolar protein sortin 95.7 0.015 5.1E-07 60.2 7.0 34 189-224 84-117 (355)
120 4b4t_J 26S protease regulatory 95.7 0.019 6.5E-07 59.7 7.7 46 189-236 182-227 (405)
121 3vfd_A Spastin; ATPase, microt 95.7 0.057 2E-06 56.5 11.6 40 189-230 148-187 (389)
122 1w4r_A Thymidine kinase; type 95.7 0.01 3.4E-07 55.2 4.9 34 192-225 23-57 (195)
123 4b4t_L 26S protease subunit RP 95.4 0.024 8.1E-07 59.9 7.3 44 189-234 215-258 (437)
124 3e2i_A Thymidine kinase; Zn-bi 95.3 0.019 6.6E-07 54.0 5.5 34 192-225 31-65 (219)
125 4b4t_I 26S protease regulatory 95.1 0.03 1E-06 58.5 6.9 45 189-235 216-260 (437)
126 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.037 1.3E-06 56.3 7.2 37 190-227 46-82 (322)
127 3uk6_A RUVB-like 2; hexameric 95.0 0.12 4E-06 53.5 11.2 51 175-225 49-106 (368)
128 3d8b_A Fidgetin-like protein 1 94.9 0.066 2.2E-06 55.3 8.9 37 189-227 117-153 (357)
129 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.065 2.2E-06 52.4 8.3 36 189-226 39-74 (262)
130 3bos_A Putative DNA replicatio 94.8 0.033 1.1E-06 53.5 5.9 45 178-222 39-86 (242)
131 3t15_A Ribulose bisphosphate c 94.8 0.046 1.6E-06 54.8 7.1 39 189-229 36-74 (293)
132 2bjv_A PSP operon transcriptio 94.7 0.087 3E-06 51.7 8.8 44 184-227 24-68 (265)
133 2z4s_A Chromosomal replication 94.7 0.21 7.2E-06 53.1 12.3 39 190-228 131-172 (440)
134 2v1u_A Cell division control p 94.6 0.14 4.9E-06 52.9 10.6 39 175-213 24-68 (387)
135 2r2a_A Uncharacterized protein 94.6 0.044 1.5E-06 51.4 5.9 22 192-213 8-29 (199)
136 2qby_B CDC6 homolog 3, cell di 94.5 0.074 2.5E-06 55.3 8.2 39 175-213 25-69 (384)
137 4b4t_M 26S protease regulatory 94.5 0.032 1.1E-06 58.9 5.2 44 189-234 215-258 (434)
138 4b4t_H 26S protease regulatory 94.4 0.049 1.7E-06 57.5 6.3 44 189-234 243-286 (467)
139 2chg_A Replication factor C sm 94.4 0.45 1.5E-05 44.5 12.8 39 175-213 22-62 (226)
140 3n70_A Transport activator; si 94.3 0.16 5.6E-06 44.6 8.9 35 186-220 21-56 (145)
141 1fnn_A CDC6P, cell division co 94.3 0.4 1.4E-05 49.6 13.3 33 191-223 46-80 (389)
142 4b4t_K 26S protease regulatory 94.3 0.05 1.7E-06 57.3 6.1 41 189-231 206-246 (428)
143 2zan_A Vacuolar protein sortin 94.1 0.049 1.7E-06 58.1 5.7 40 189-229 167-206 (444)
144 2xzl_A ATP-dependent helicase 94.0 0.063 2.2E-06 61.6 6.9 66 172-238 359-427 (802)
145 1ofh_A ATP-dependent HSL prote 94.0 0.32 1.1E-05 48.5 11.5 34 189-224 50-83 (310)
146 1sxj_D Activator 1 41 kDa subu 93.9 0.07 2.4E-06 54.7 6.5 63 176-238 43-113 (353)
147 2wjy_A Regulator of nonsense t 93.9 0.074 2.5E-06 61.0 7.1 65 172-237 355-422 (800)
148 1sxj_A Activator 1 95 kDa subu 93.9 0.042 1.4E-06 60.0 4.8 38 190-229 78-115 (516)
149 3b9p_A CG5977-PA, isoform A; A 93.7 0.096 3.3E-06 52.4 6.8 25 189-213 54-78 (297)
150 3u61_B DNA polymerase accessor 93.7 0.46 1.6E-05 48.0 12.0 49 175-225 31-82 (324)
151 2gno_A DNA polymerase III, gam 93.6 0.35 1.2E-05 48.6 10.8 32 181-212 8-41 (305)
152 1d2n_A N-ethylmaleimide-sensit 93.4 0.12 4.1E-06 51.0 6.8 31 190-222 65-95 (272)
153 1iqp_A RFCS; clamp loader, ext 93.2 0.44 1.5E-05 47.9 10.9 39 175-213 30-70 (327)
154 3pvs_A Replication-associated 92.9 0.62 2.1E-05 49.5 11.8 34 181-214 40-75 (447)
155 1njg_A DNA polymerase III subu 92.8 0.91 3.1E-05 42.9 12.2 40 175-214 28-70 (250)
156 2qby_A CDC6 homolog 1, cell di 92.7 0.15 5.3E-06 52.6 6.8 40 175-214 25-70 (386)
157 3te6_A Regulatory protein SIR3 92.7 0.58 2E-05 47.1 10.7 26 189-214 45-70 (318)
158 3cf0_A Transitional endoplasmi 92.6 0.083 2.8E-06 53.1 4.4 39 188-228 48-86 (301)
159 1w5s_A Origin recognition comp 92.6 0.26 8.9E-06 51.6 8.5 40 175-214 27-77 (412)
160 4fcw_A Chaperone protein CLPB; 92.5 0.14 4.9E-06 51.3 6.0 35 191-225 49-84 (311)
161 3dm5_A SRP54, signal recogniti 92.4 0.6 2E-05 49.2 10.7 49 191-239 102-151 (443)
162 1ojl_A Transcriptional regulat 92.3 0.45 1.5E-05 47.8 9.3 41 187-227 23-64 (304)
163 3hu3_A Transitional endoplasmi 92.3 0.16 5.6E-06 54.6 6.4 33 189-223 238-270 (489)
164 3crv_A XPD/RAD3 related DNA he 92.2 0.86 2.9E-05 49.9 12.2 91 472-570 378-476 (551)
165 2zr9_A Protein RECA, recombina 92.1 0.88 3E-05 46.6 11.3 52 180-231 47-104 (349)
166 1qvr_A CLPB protein; coiled co 91.9 0.36 1.2E-05 56.0 9.2 25 189-213 191-215 (854)
167 2kjq_A DNAA-related protein; s 91.8 0.26 8.8E-06 43.7 6.1 27 188-214 35-61 (149)
168 2qen_A Walker-type ATPase; unk 91.8 1.1 3.6E-05 45.5 11.7 40 174-213 16-55 (350)
169 2c9o_A RUVB-like 1; hexameric 91.6 0.16 5.3E-06 54.4 5.2 42 189-230 63-104 (456)
170 1sxj_B Activator 1 37 kDa subu 91.5 0.57 1.9E-05 47.0 9.2 39 175-213 26-66 (323)
171 1xp8_A RECA protein, recombina 91.3 1.2 4.2E-05 45.7 11.6 98 181-310 61-165 (366)
172 3kl4_A SRP54, signal recogniti 91.1 0.85 2.9E-05 48.0 10.2 33 191-223 99-132 (433)
173 3hws_A ATP-dependent CLP prote 90.9 0.37 1.2E-05 49.7 7.1 35 189-225 51-85 (363)
174 1r6b_X CLPA protein; AAA+, N-t 90.9 0.49 1.7E-05 54.1 8.8 38 176-213 192-231 (758)
175 1sxj_C Activator 1 40 kDa subu 90.9 2.3 7.9E-05 43.1 13.1 39 176-214 31-71 (340)
176 1jr3_A DNA polymerase III subu 90.7 1.2 4.2E-05 45.6 11.0 40 175-214 21-63 (373)
177 2w0m_A SSO2452; RECA, SSPF, un 90.5 3.3 0.00011 38.8 13.2 45 189-233 23-68 (235)
178 3pfi_A Holliday junction ATP-d 90.4 1.2 4.1E-05 45.1 10.4 25 190-214 56-80 (338)
179 3hr8_A Protein RECA; alpha and 90.2 1.7 5.8E-05 44.4 11.2 51 180-230 47-103 (356)
180 1lv7_A FTSH; alpha/beta domain 90.1 0.24 8.2E-06 48.2 4.6 32 189-222 45-76 (257)
181 3cf2_A TER ATPase, transitiona 89.9 0.37 1.3E-05 54.8 6.5 43 189-233 238-280 (806)
182 3k1j_A LON protease, ATP-depen 89.2 2.2 7.4E-05 47.2 12.0 38 177-214 48-85 (604)
183 1g5t_A COB(I)alamin adenosyltr 89.2 0.73 2.5E-05 42.7 6.8 36 188-223 27-63 (196)
184 2cvh_A DNA repair and recombin 88.9 1.8 6.2E-05 40.4 9.7 43 189-233 20-64 (220)
185 1u94_A RECA protein, recombina 88.9 2.6 8.8E-05 43.1 11.4 46 181-226 50-101 (356)
186 2q6t_A DNAB replication FORK h 88.7 3.8 0.00013 43.3 13.1 55 181-235 189-248 (444)
187 2r6a_A DNAB helicase, replicat 88.1 2.2 7.5E-05 45.3 10.7 48 187-234 201-250 (454)
188 1n0w_A DNA repair protein RAD5 88.0 5.5 0.00019 37.6 12.8 38 189-226 24-68 (243)
189 2zpa_A Uncharacterized protein 87.9 1.7 5.7E-05 48.2 9.7 51 172-225 174-226 (671)
190 3io5_A Recombination and repai 87.6 4.2 0.00014 40.7 11.5 88 191-310 30-124 (333)
191 2ce7_A Cell division protein F 87.4 0.68 2.3E-05 49.4 6.2 33 189-223 49-81 (476)
192 1gm5_A RECG; helicase, replica 87.4 2 6.8E-05 48.9 10.3 101 466-567 397-501 (780)
193 2dr3_A UPF0273 protein PH0284; 87.3 2.5 8.5E-05 40.3 9.8 48 189-236 23-71 (247)
194 2chq_A Replication factor C sm 87.3 1.2 4E-05 44.5 7.7 38 176-213 23-62 (319)
195 3cf2_A TER ATPase, transitiona 86.9 0.28 9.7E-06 55.8 3.0 41 189-231 511-551 (806)
196 1um8_A ATP-dependent CLP prote 86.7 0.7 2.4E-05 47.8 5.7 32 189-222 72-103 (376)
197 1pjr_A PCRA; DNA repair, DNA r 86.0 0.67 2.3E-05 52.6 5.5 67 171-240 9-81 (724)
198 1uaa_A REP helicase, protein ( 85.6 0.69 2.4E-05 52.0 5.3 65 173-240 2-72 (673)
199 1hqc_A RUVB; extended AAA-ATPa 85.6 1.9 6.6E-05 43.1 8.3 25 190-214 39-63 (324)
200 1r6b_X CLPA protein; AAA+, N-t 84.9 0.74 2.5E-05 52.6 5.2 30 191-222 490-519 (758)
201 3pxi_A Negative regulator of g 84.3 1.7 5.7E-05 49.6 7.8 32 191-222 523-555 (758)
202 1qvr_A CLPB protein; coiled co 83.8 1.3 4.4E-05 51.4 6.6 33 190-222 589-622 (854)
203 3cmu_A Protein RECA, recombina 83.6 4.8 0.00017 50.3 11.7 99 181-311 719-824 (2050)
204 1sxj_E Activator 1 40 kDa subu 83.0 5 0.00017 40.6 10.2 23 191-213 38-60 (354)
205 1vma_A Cell division protein F 82.4 4.5 0.00015 40.4 9.1 33 192-224 107-140 (306)
206 3cmu_A Protein RECA, recombina 82.3 6.7 0.00023 49.1 12.2 50 181-230 1414-1469(2050)
207 1nlf_A Regulatory protein REPA 81.9 10 0.00035 36.9 11.6 44 188-231 29-83 (279)
208 2fna_A Conserved hypothetical 81.6 6.5 0.00022 39.5 10.4 38 175-214 18-55 (357)
209 2x8a_A Nuclear valosin-contain 81.3 2.8 9.6E-05 41.1 7.1 26 189-214 44-69 (274)
210 1ixz_A ATP-dependent metallopr 81.1 1.3 4.4E-05 42.8 4.5 25 190-214 50-74 (254)
211 2px0_A Flagellar biosynthesis 80.8 5.9 0.0002 39.2 9.4 36 189-224 105-142 (296)
212 3hjh_A Transcription-repair-co 80.7 1.9 6.5E-05 46.1 6.0 50 189-240 14-64 (483)
213 2w58_A DNAI, primosome compone 80.7 2.2 7.6E-05 39.3 5.9 34 190-223 55-89 (202)
214 2oap_1 GSPE-2, type II secreti 80.6 2.4 8.1E-05 45.8 6.8 48 174-221 245-292 (511)
215 2z43_A DNA repair and recombin 80.1 9.6 0.00033 38.2 10.9 47 180-226 94-151 (324)
216 1v5w_A DMC1, meiotic recombina 79.6 12 0.00042 37.8 11.5 46 181-226 110-166 (343)
217 1zu4_A FTSY; GTPase, signal re 79.4 11 0.00038 37.7 11.0 33 192-224 108-141 (320)
218 3oiy_A Reverse gyrase helicase 78.5 6.2 0.00021 41.0 9.2 100 465-565 43-148 (414)
219 1iy2_A ATP-dependent metallopr 78.4 2 6.8E-05 42.2 4.9 25 190-214 74-98 (278)
220 2ehv_A Hypothetical protein PH 77.1 5 0.00017 38.1 7.4 43 188-230 29-73 (251)
221 2dhr_A FTSH; AAA+ protein, hex 77.1 2 6.9E-05 46.1 4.8 33 190-224 65-97 (499)
222 3bh0_A DNAB-like replicative h 77.0 39 0.0013 33.4 14.3 48 189-236 68-116 (315)
223 2vhj_A Ntpase P4, P4; non- hyd 76.9 2.2 7.5E-05 42.8 4.7 24 189-212 123-146 (331)
224 1ypw_A Transitional endoplasmi 76.1 1.7 5.8E-05 49.9 4.1 25 189-213 238-262 (806)
225 2qgz_A Helicase loader, putati 75.9 2.9 9.8E-05 41.8 5.4 35 189-223 152-188 (308)
226 1ls1_A Signal recognition part 75.7 14 0.00049 36.4 10.4 33 192-224 101-134 (295)
227 2l82_A Designed protein OR32; 75.5 11 0.00038 30.3 7.4 49 488-536 4-52 (162)
228 3cmw_A Protein RECA, recombina 74.8 10 0.00035 46.7 10.6 98 181-310 719-823 (1706)
229 3nbx_X ATPase RAVA; AAA+ ATPas 74.5 3.3 0.00011 44.4 5.7 42 178-219 30-71 (500)
230 3lda_A DNA repair protein RAD5 74.0 19 0.00066 37.2 11.2 46 181-226 166-222 (400)
231 2r44_A Uncharacterized protein 73.2 3.1 0.0001 41.9 4.9 38 177-214 34-71 (331)
232 1q57_A DNA primase/helicase; d 73.1 36 0.0012 36.2 13.7 46 189-234 242-289 (503)
233 3bgw_A DNAB-like replicative h 72.7 34 0.0012 35.9 13.0 55 181-235 186-244 (444)
234 4a74_A DNA repair and recombin 71.9 18 0.0006 33.6 9.8 38 189-226 25-69 (231)
235 2i1q_A DNA repair and recombin 71.6 17 0.00057 36.2 10.0 47 180-226 85-152 (322)
236 4ddu_A Reverse gyrase; topoiso 70.4 11 0.00036 44.9 9.2 100 465-565 100-205 (1104)
237 2eyq_A TRCF, transcription-rep 70.2 13 0.00044 44.4 9.9 101 465-566 631-735 (1151)
238 2xxa_A Signal recognition part 69.5 38 0.0013 35.3 12.4 35 191-225 102-138 (433)
239 2j37_W Signal recognition part 68.8 15 0.00051 39.3 9.1 34 191-224 103-137 (504)
240 1ypw_A Transitional endoplasmi 68.6 0.6 2E-05 53.7 -2.0 26 189-214 511-536 (806)
241 3vaa_A Shikimate kinase, SK; s 66.0 3.4 0.00012 38.1 3.1 35 180-214 16-50 (199)
242 3cmw_A Protein RECA, recombina 65.6 26 0.00087 43.3 11.2 100 180-311 369-475 (1706)
243 2ffh_A Protein (FFH); SRP54, s 64.7 41 0.0014 35.0 11.3 33 192-224 101-134 (425)
244 3u4q_A ATP-dependent helicase/ 64.6 7.1 0.00024 47.1 6.2 66 171-239 8-81 (1232)
245 1tue_A Replication protein E1; 63.9 5.5 0.00019 37.0 4.0 24 191-214 60-83 (212)
246 2zts_A Putative uncharacterize 63.6 9 0.00031 36.2 5.8 48 189-236 30-79 (251)
247 2r8r_A Sensor protein; KDPD, P 61.6 5 0.00017 37.9 3.3 42 191-232 8-52 (228)
248 2gza_A Type IV secretion syste 60.1 12 0.0004 38.2 6.1 43 180-222 166-208 (361)
249 4dzz_A Plasmid partitioning pr 59.7 81 0.0028 28.3 11.5 32 193-224 6-38 (206)
250 3ipz_A Monothiol glutaredoxin- 59.5 40 0.0014 27.3 8.3 68 475-544 7-80 (109)
251 2j48_A Two-component sensor ki 58.0 23 0.00079 28.1 6.7 91 485-581 24-117 (119)
252 3nhm_A Response regulator; pro 57.4 60 0.0021 26.4 9.5 103 477-583 18-123 (133)
253 2r62_A Cell division protease 56.5 5.1 0.00018 38.7 2.6 26 189-214 44-69 (268)
254 1byi_A Dethiobiotin synthase; 55.2 9.6 0.00033 35.5 4.2 32 193-224 6-38 (224)
255 1j8m_F SRP54, signal recogniti 54.6 83 0.0028 30.8 11.1 33 192-224 101-134 (297)
256 1pzn_A RAD51, DNA repair and r 54.2 65 0.0022 32.4 10.5 47 180-226 118-175 (349)
257 3u4q_B ATP-dependent helicase/ 54.0 12 0.0004 44.9 5.6 49 191-240 4-56 (1166)
258 2qmh_A HPR kinase/phosphorylas 53.7 5.4 0.00018 36.9 2.0 25 189-213 34-58 (205)
259 3trf_A Shikimate kinase, SK; a 53.2 7.6 0.00026 34.9 3.0 26 189-214 5-30 (185)
260 3zyw_A Glutaredoxin-3; metal b 53.0 55 0.0019 26.6 8.0 68 475-544 5-78 (111)
261 2pt7_A CAG-ALFA; ATPase, prote 53.0 16 0.00053 36.8 5.5 45 178-222 160-204 (330)
262 1in4_A RUVB, holliday junction 52.6 12 0.00041 37.6 4.6 38 177-214 32-76 (334)
263 3cwq_A Para family chromosome 51.9 12 0.0004 34.8 4.1 40 193-232 5-46 (209)
264 1g41_A Heat shock protein HSLU 51.7 14 0.00049 38.7 5.1 34 189-224 50-83 (444)
265 1wp9_A ATP-dependent RNA helic 51.2 49 0.0017 34.3 9.5 96 465-566 30-135 (494)
266 1nks_A Adenylate kinase; therm 51.0 10 0.00034 34.2 3.5 33 192-224 4-36 (194)
267 3a8t_A Adenylate isopentenyltr 50.9 8 0.00027 39.0 2.9 24 191-214 42-65 (339)
268 1p9r_A General secretion pathw 50.5 26 0.00088 36.5 6.9 50 173-222 150-201 (418)
269 3gx8_A Monothiol glutaredoxin- 50.5 50 0.0017 27.4 7.5 68 475-544 5-81 (121)
270 2oze_A ORF delta'; para, walke 49.9 14 0.00047 36.3 4.5 45 178-222 22-71 (298)
271 3of5_A Dethiobiotin synthetase 49.8 7.9 0.00027 36.7 2.6 33 192-224 8-41 (228)
272 3fkq_A NTRC-like two-domain pr 49.7 42 0.0014 34.1 8.4 31 193-223 148-179 (373)
273 3qxc_A Dethiobiotin synthetase 48.6 8.6 0.00029 36.8 2.6 32 192-223 25-57 (242)
274 3e70_C DPA, signal recognition 48.0 94 0.0032 30.9 10.4 33 191-223 131-164 (328)
275 4a1f_A DNAB helicase, replicat 48.0 23 0.00077 35.7 5.7 45 189-233 46-91 (338)
276 1u0j_A DNA replication protein 47.9 11 0.00037 36.6 3.2 23 191-213 106-128 (267)
277 2yhs_A FTSY, cell division pro 47.8 1.2E+02 0.0042 32.1 11.5 32 192-223 296-328 (503)
278 1gku_B Reverse gyrase, TOP-RG; 47.5 42 0.0014 39.6 8.8 97 465-564 78-183 (1054)
279 3pxg_A Negative regulator of g 47.3 13 0.00046 39.3 4.2 38 177-214 187-226 (468)
280 1g3q_A MIND ATPase, cell divis 47.3 13 0.00045 34.8 3.8 32 193-224 7-39 (237)
281 2pl3_A Probable ATP-dependent 47.1 82 0.0028 29.2 9.5 94 465-564 69-179 (236)
282 3k9g_A PF-32 protein; ssgcid, 46.9 14 0.00048 35.6 3.9 45 178-222 15-61 (267)
283 1t6n_A Probable ATP-dependent 46.5 86 0.0029 28.6 9.4 97 466-566 59-168 (220)
284 3i42_A Response regulator rece 46.4 49 0.0017 26.8 6.9 94 485-584 26-124 (127)
285 1qhx_A CPT, protein (chloramph 46.2 13 0.00044 33.1 3.3 24 191-214 5-28 (178)
286 3fgn_A Dethiobiotin synthetase 45.8 10 0.00034 36.5 2.6 33 192-224 30-63 (251)
287 3iij_A Coilin-interacting nucl 45.6 14 0.00048 33.0 3.5 26 189-214 11-36 (180)
288 3tqf_A HPR(Ser) kinase; transf 45.4 10 0.00034 34.3 2.3 24 189-212 16-39 (181)
289 1g8p_A Magnesium-chelatase 38 45.1 11 0.00037 37.9 2.9 27 188-214 44-70 (350)
290 3nwj_A ATSK2; P loop, shikimat 45.1 17 0.00057 34.9 4.1 36 179-214 35-73 (250)
291 3a10_A Response regulator; pho 45.1 97 0.0033 24.3 8.5 72 508-580 43-115 (116)
292 3ber_A Probable ATP-dependent 44.9 1E+02 0.0035 29.0 9.8 96 466-566 88-196 (249)
293 1hyq_A MIND, cell division inh 44.7 17 0.00057 34.9 4.1 31 193-223 7-38 (263)
294 3ea0_A ATPase, para family; al 44.7 19 0.00066 33.8 4.5 31 193-223 9-41 (245)
295 3lte_A Response regulator; str 44.4 64 0.0022 26.2 7.5 27 486-512 6-32 (132)
296 2ph1_A Nucleotide-binding prot 43.7 16 0.00054 35.1 3.8 31 193-223 23-54 (262)
297 1aky_A Adenylate kinase; ATP:A 43.7 13 0.00045 34.5 3.1 26 189-214 4-29 (220)
298 2c95_A Adenylate kinase 1; tra 43.3 13 0.00046 33.5 3.0 28 187-214 7-34 (196)
299 2ze6_A Isopentenyl transferase 43.2 14 0.00046 35.5 3.1 23 192-214 4-26 (253)
300 4ggd_C Mitotic checkpoint seri 43.1 4.7 0.00016 22.5 -0.1 15 5-19 1-15 (26)
301 3cg4_A Response regulator rece 43.1 1.4E+02 0.0047 24.5 10.2 25 487-511 8-32 (142)
302 3exa_A TRNA delta(2)-isopenten 43.1 14 0.00049 36.7 3.2 31 192-226 6-36 (322)
303 3q9l_A Septum site-determining 43.0 17 0.00057 34.6 3.8 31 193-223 7-38 (260)
304 3zq6_A Putative arsenical pump 42.9 17 0.00058 36.4 3.9 34 192-225 17-51 (324)
305 2woo_A ATPase GET3; tail-ancho 42.6 21 0.0007 35.8 4.5 32 192-223 22-54 (329)
306 3crm_A TRNA delta(2)-isopenten 42.3 15 0.00051 36.8 3.3 24 191-214 7-30 (323)
307 1cp2_A CP2, nitrogenase iron p 42.0 16 0.00054 35.2 3.4 28 195-222 7-35 (269)
308 3fe2_A Probable ATP-dependent 41.8 1.3E+02 0.0043 28.0 9.9 95 465-564 73-184 (242)
309 3g5j_A Putative ATP/GTP bindin 41.6 30 0.001 28.9 4.9 50 471-521 74-125 (134)
310 3kb2_A SPBC2 prophage-derived 41.6 16 0.00054 32.1 3.1 23 192-214 4-26 (173)
311 3foz_A TRNA delta(2)-isopenten 41.5 16 0.00054 36.3 3.3 22 192-213 13-34 (316)
312 3ug7_A Arsenical pump-driving 41.2 19 0.00065 36.5 4.0 32 192-223 29-61 (349)
313 1cr0_A DNA primase/helicase; R 40.8 22 0.00074 34.8 4.3 45 181-225 27-73 (296)
314 2z0h_A DTMP kinase, thymidylat 40.8 27 0.00093 31.4 4.8 24 192-215 3-26 (197)
315 1kht_A Adenylate kinase; phosp 40.8 16 0.00054 32.8 3.1 26 190-215 4-29 (192)
316 2v54_A DTMP kinase, thymidylat 40.5 22 0.00076 32.2 4.1 32 189-221 4-35 (204)
317 2oxc_A Probable ATP-dependent 40.4 69 0.0024 29.6 7.7 94 465-564 68-174 (230)
318 3iuy_A Probable ATP-dependent 40.2 76 0.0026 29.2 7.9 94 466-564 65-175 (228)
319 1ak2_A Adenylate kinase isoenz 39.9 16 0.00055 34.3 3.1 26 189-214 16-41 (233)
320 3d3q_A TRNA delta(2)-isopenten 39.7 17 0.00058 36.6 3.3 24 191-214 9-32 (340)
321 2rhm_A Putative kinase; P-loop 39.6 16 0.00055 32.9 2.9 24 191-214 7-30 (193)
322 3grc_A Sensor protein, kinase; 39.4 1E+02 0.0035 25.3 8.0 74 508-581 48-126 (140)
323 2lnd_A De novo designed protei 39.4 1.2E+02 0.0041 22.8 7.2 60 473-533 38-99 (112)
324 1zak_A Adenylate kinase; ATP:A 39.3 17 0.00057 33.8 3.0 26 189-214 5-30 (222)
325 3cio_A ETK, tyrosine-protein k 39.2 22 0.00075 35.0 4.0 29 195-223 111-140 (299)
326 1y63_A LMAJ004144AAA protein; 39.1 18 0.00061 32.6 3.1 24 189-212 10-33 (184)
327 3la6_A Tyrosine-protein kinase 39.0 26 0.00089 34.3 4.5 31 193-223 97-128 (286)
328 2iyv_A Shikimate kinase, SK; t 38.9 21 0.00072 31.9 3.6 24 191-214 4-27 (184)
329 3tbk_A RIG-I helicase domain; 38.9 46 0.0016 35.5 6.9 95 465-564 26-135 (555)
330 1zuh_A Shikimate kinase; alpha 38.6 19 0.00066 31.6 3.2 24 191-214 9-32 (168)
331 2ga8_A Hypothetical 39.9 kDa p 38.5 22 0.00076 36.0 3.9 29 185-213 18-48 (359)
332 1via_A Shikimate kinase; struc 38.4 20 0.00068 31.8 3.3 24 191-214 6-29 (175)
333 3a4m_A L-seryl-tRNA(SEC) kinas 38.1 25 0.00085 33.8 4.1 33 191-223 6-39 (260)
334 3iqw_A Tail-anchored protein t 37.9 28 0.00095 35.0 4.6 33 192-224 19-52 (334)
335 1yrb_A ATP(GTP)binding protein 37.8 29 0.00098 33.0 4.6 32 192-223 17-48 (262)
336 2wem_A Glutaredoxin-related pr 37.6 1.1E+02 0.0037 25.2 7.5 65 478-544 12-83 (118)
337 2wci_A Glutaredoxin-4; redox-a 37.5 1.2E+02 0.004 25.7 7.9 57 475-532 24-86 (135)
338 3ly5_A ATP-dependent RNA helic 37.5 2.3E+02 0.0078 26.7 11.1 95 465-564 98-209 (262)
339 3bfv_A CAPA1, CAPB2, membrane 37.5 23 0.00079 34.3 3.8 27 196-222 90-117 (271)
340 1zd8_A GTP:AMP phosphotransfer 37.2 19 0.00065 33.6 3.1 26 189-214 7-32 (227)
341 2wul_A Glutaredoxin related pr 37.1 1.1E+02 0.0039 25.2 7.5 57 486-543 19-82 (118)
342 3f6p_A Transcriptional regulat 36.8 1.3E+02 0.0045 23.9 8.1 38 507-544 43-80 (120)
343 2afh_E Nitrogenase iron protei 36.7 18 0.00063 35.2 3.0 28 195-222 8-36 (289)
344 2plr_A DTMP kinase, probable t 36.6 33 0.0011 31.2 4.6 29 191-219 6-34 (213)
345 2yvu_A Probable adenylyl-sulfa 36.6 23 0.00079 31.7 3.4 34 189-222 13-47 (186)
346 2pbr_A DTMP kinase, thymidylat 36.5 33 0.0011 30.7 4.5 23 192-214 3-25 (195)
347 3end_A Light-independent proto 36.5 18 0.00063 35.6 3.0 31 192-222 44-75 (307)
348 1gvn_B Zeta; postsegregational 36.4 25 0.00086 34.4 3.9 23 191-213 35-57 (287)
349 3pxi_A Negative regulator of g 36.1 24 0.00082 40.0 4.2 38 176-213 186-225 (758)
350 2jaq_A Deoxyguanosine kinase; 36.0 22 0.00074 32.2 3.2 23 192-214 3-25 (205)
351 1xti_A Probable ATP-dependent 35.9 1.2E+02 0.0042 30.3 9.4 98 465-566 52-162 (391)
352 1kag_A SKI, shikimate kinase I 35.9 28 0.00096 30.6 3.9 26 189-214 4-29 (173)
353 3cm0_A Adenylate kinase; ATP-b 35.8 22 0.00074 31.8 3.1 25 190-214 5-29 (186)
354 3fwy_A Light-independent proto 35.7 19 0.00067 35.8 3.0 28 195-222 54-82 (314)
355 3be4_A Adenylate kinase; malar 35.7 20 0.0007 33.2 3.0 26 189-214 5-30 (217)
356 3kjh_A CO dehydrogenase/acetyl 35.7 25 0.00085 33.1 3.7 29 194-222 5-34 (254)
357 1e6c_A Shikimate kinase; phosp 35.7 22 0.00076 31.2 3.1 24 191-214 4-27 (173)
358 3lw7_A Adenylate kinase relate 35.5 20 0.00069 31.3 2.9 18 192-209 4-21 (179)
359 1ly1_A Polynucleotide kinase; 35.4 23 0.00078 31.3 3.2 20 192-211 5-24 (181)
360 1wcv_1 SOJ, segregation protei 35.3 19 0.00064 34.5 2.7 29 195-223 13-42 (257)
361 2bwj_A Adenylate kinase 5; pho 35.2 22 0.00074 32.1 3.1 27 188-214 11-37 (199)
362 4a2q_A RIG-I, retinoic acid in 35.1 68 0.0023 36.4 7.8 96 465-565 270-380 (797)
363 3sr0_A Adenylate kinase; phosp 34.9 23 0.00079 32.7 3.2 23 192-214 3-25 (206)
364 1tev_A UMP-CMP kinase; ploop, 34.8 23 0.00078 31.8 3.1 24 191-214 5-28 (196)
365 1u6t_A SH3 domain-binding glut 34.8 50 0.0017 27.6 4.9 35 499-533 19-53 (121)
366 3t61_A Gluconokinase; PSI-biol 34.8 22 0.00076 32.3 3.1 25 189-213 18-42 (202)
367 1qf9_A UMP/CMP kinase, protein 34.7 21 0.00073 31.9 2.9 24 191-214 8-31 (194)
368 2xj4_A MIPZ; replication, cell 34.5 25 0.00084 34.3 3.5 40 194-233 10-53 (286)
369 4ag6_A VIRB4 ATPase, type IV s 34.5 30 0.001 35.4 4.4 39 188-226 34-73 (392)
370 2qor_A Guanylate kinase; phosp 34.0 29 0.001 31.6 3.8 25 189-213 12-36 (204)
371 3nwn_A Kinesin-like protein KI 34.0 24 0.00081 35.9 3.3 28 181-208 96-124 (359)
372 2lqo_A Putative glutaredoxin R 33.6 90 0.0031 24.4 6.1 57 487-543 4-61 (92)
373 2cdn_A Adenylate kinase; phosp 33.5 25 0.00084 32.0 3.1 24 191-214 22-45 (201)
374 3dl0_A Adenylate kinase; phosp 33.4 26 0.00088 32.3 3.3 22 192-213 3-24 (216)
375 2pt5_A Shikimate kinase, SK; a 33.2 26 0.00088 30.6 3.1 23 192-214 3-25 (168)
376 2woj_A ATPase GET3; tail-ancho 33.1 30 0.001 35.1 3.9 34 192-225 21-57 (354)
377 3eph_A TRNA isopentenyltransfe 33.0 22 0.00076 36.7 2.9 23 192-214 5-27 (409)
378 3uie_A Adenylyl-sulfate kinase 32.9 27 0.00091 31.8 3.2 28 187-214 23-50 (200)
379 1ihu_A Arsenical pump-driving 32.8 29 0.001 37.9 4.1 33 192-224 11-44 (589)
380 1ukz_A Uridylate kinase; trans 32.6 27 0.00092 31.7 3.3 24 191-214 17-40 (203)
381 3umf_A Adenylate kinase; rossm 32.6 26 0.00088 32.8 3.1 26 189-214 29-54 (217)
382 3fb4_A Adenylate kinase; psych 32.4 26 0.00087 32.3 3.1 22 192-213 3-24 (216)
383 4a2p_A RIG-I, retinoic acid in 32.1 61 0.0021 34.6 6.5 97 465-566 29-140 (556)
384 2vli_A Antibiotic resistance p 32.0 20 0.00068 31.9 2.2 25 190-214 6-30 (183)
385 3h5i_A Response regulator/sens 31.9 2.1E+02 0.0071 23.3 10.0 28 486-513 5-32 (140)
386 1pjr_A PCRA; DNA repair, DNA r 31.8 1.7E+02 0.0057 32.7 10.2 40 488-528 353-392 (724)
387 3eqz_A Response regulator; str 31.8 2E+02 0.0068 23.0 8.7 74 511-584 47-127 (135)
388 1e4v_A Adenylate kinase; trans 31.4 26 0.00088 32.3 2.9 22 192-213 3-24 (214)
389 3dc4_A Kinesin-like protein NO 31.3 33 0.0011 34.6 3.8 26 182-207 87-113 (344)
390 3io3_A DEHA2D07832P; chaperone 30.8 37 0.0013 34.3 4.1 33 192-224 21-56 (348)
391 4akg_A Glutathione S-transfera 30.7 64 0.0022 41.9 7.1 57 182-239 1260-1318(2695)
392 4etp_A Kinesin-like protein KA 30.6 28 0.00094 36.0 3.2 26 182-207 133-159 (403)
393 3jvv_A Twitching mobility prot 30.4 25 0.00086 35.7 2.8 28 187-214 121-148 (356)
394 3cnb_A DNA-binding response re 30.3 2.1E+02 0.0071 23.2 8.5 78 507-584 51-132 (143)
395 2v3c_C SRP54, signal recogniti 30.2 23 0.00077 37.1 2.5 34 191-224 101-135 (432)
396 1v8k_A Kinesin-like protein KI 29.9 23 0.00077 36.7 2.3 27 182-208 147-174 (410)
397 2gxq_A Heat resistant RNA depe 29.8 1.7E+02 0.0058 26.1 8.4 97 465-566 45-154 (207)
398 3tau_A Guanylate kinase, GMP k 29.7 24 0.00082 32.5 2.3 26 189-214 8-33 (208)
399 1knx_A Probable HPR(Ser) kinas 29.7 21 0.00071 35.5 2.0 23 189-211 147-169 (312)
400 1xjc_A MOBB protein homolog; s 29.6 40 0.0014 30.0 3.7 32 192-223 7-39 (169)
401 2wwf_A Thymidilate kinase, put 29.4 28 0.00096 31.8 2.8 26 189-214 10-35 (212)
402 3sxu_A DNA polymerase III subu 29.4 58 0.002 28.3 4.6 40 470-509 23-62 (150)
403 1z6g_A Guanylate kinase; struc 29.3 53 0.0018 30.4 4.7 41 179-221 13-53 (218)
404 2xb4_A Adenylate kinase; ATP-b 29.0 32 0.0011 32.0 3.1 23 192-214 3-25 (223)
405 4eaq_A DTMP kinase, thymidylat 29.0 75 0.0026 29.7 5.8 32 189-220 26-57 (229)
406 2p5t_B PEZT; postsegregational 28.6 32 0.0011 32.8 3.1 25 190-214 33-57 (253)
407 2qe7_A ATP synthase subunit al 28.6 50 0.0017 35.0 4.7 60 179-238 150-215 (502)
408 2v9p_A Replication protein E1; 28.6 26 0.0009 34.7 2.5 43 181-225 118-160 (305)
409 1c9k_A COBU, adenosylcobinamid 28.5 55 0.0019 29.5 4.4 44 193-239 3-47 (180)
410 2nr8_A Kinesin-like protein KI 28.3 34 0.0011 34.7 3.3 28 181-208 95-123 (358)
411 3foj_A Uncharacterized protein 28.3 45 0.0015 26.3 3.5 37 485-521 55-91 (100)
412 1e9r_A Conjugal transfer prote 27.6 35 0.0012 35.5 3.5 61 471-533 293-361 (437)
413 2heh_A KIF2C protein; kinesin, 27.5 27 0.00092 35.8 2.4 27 182-208 127-154 (387)
414 3hix_A ALR3790 protein; rhodan 27.5 47 0.0016 26.6 3.5 38 484-521 50-88 (106)
415 2wbe_C Bipolar kinesin KRP-130 27.3 41 0.0014 34.3 3.8 27 182-208 93-120 (373)
416 1fx0_A ATP synthase alpha chai 27.3 51 0.0017 35.0 4.5 36 188-223 162-197 (507)
417 1bg2_A Kinesin; motor protein, 27.3 38 0.0013 33.8 3.5 27 182-208 70-97 (325)
418 2vvg_A Kinesin-2; motor protei 27.3 38 0.0013 34.2 3.5 27 182-208 82-109 (350)
419 1ny5_A Transcriptional regulat 27.2 74 0.0025 32.5 5.8 43 187-229 158-201 (387)
420 2y65_A Kinesin, kinesin heavy 27.2 38 0.0013 34.4 3.5 27 182-208 77-104 (365)
421 3lre_A Kinesin-like protein KI 27.0 36 0.0012 34.5 3.2 27 182-208 98-125 (355)
422 1wrb_A DJVLGB; RNA helicase, D 26.9 2.8E+02 0.0094 25.7 9.6 96 466-566 68-184 (253)
423 1ko7_A HPR kinase/phosphatase; 26.8 45 0.0015 33.1 3.8 24 189-212 144-167 (314)
424 2ewv_A Twitching motility prot 26.5 33 0.0011 35.0 2.9 37 186-222 133-171 (372)
425 3gl9_A Response regulator; bet 26.3 1.9E+02 0.0067 22.9 7.4 24 488-511 4-27 (122)
426 1nn5_A Similar to deoxythymidy 26.3 35 0.0012 31.1 2.8 26 189-214 9-34 (215)
427 3b6u_A Kinesin-like protein KI 26.3 38 0.0013 34.5 3.3 27 182-208 94-121 (372)
428 2zfi_A Kinesin-like protein KI 26.2 40 0.0014 34.3 3.5 27 182-208 82-109 (366)
429 1knq_A Gluconate kinase; ALFA/ 26.2 39 0.0013 29.7 3.1 23 191-213 10-32 (175)
430 3u06_A Protein claret segregat 26.1 34 0.0012 35.4 2.9 28 181-208 130-158 (412)
431 2r9v_A ATP synthase subunit al 26.0 52 0.0018 34.9 4.3 59 179-237 163-227 (515)
432 2h58_A Kinesin-like protein KI 25.9 42 0.0014 33.6 3.5 28 181-208 72-100 (330)
433 3gbj_A KIF13B protein; kinesin 25.9 40 0.0014 34.1 3.3 27 182-208 85-112 (354)
434 1t5c_A CENP-E protein, centrom 25.9 40 0.0014 34.1 3.3 27 182-208 70-97 (349)
435 2pez_A Bifunctional 3'-phospho 25.8 34 0.0012 30.3 2.6 24 190-213 6-29 (179)
436 1uf9_A TT1252 protein; P-loop, 25.7 50 0.0017 29.7 3.8 22 191-212 10-31 (203)
437 1zp6_A Hypothetical protein AT 25.6 37 0.0013 30.3 2.8 24 189-212 9-32 (191)
438 1uaa_A REP helicase, protein ( 25.5 2.7E+02 0.0091 30.6 10.4 39 487-526 343-381 (673)
439 1zgz_A Torcad operon transcrip 25.5 2.1E+02 0.0071 22.5 7.4 24 488-511 4-27 (122)
440 3eme_A Rhodanese-like domain p 25.5 45 0.0015 26.5 3.0 37 485-521 55-91 (103)
441 3tlx_A Adenylate kinase 2; str 25.5 40 0.0014 31.9 3.1 26 188-213 28-53 (243)
442 2owm_A Nckin3-434, related to 25.5 42 0.0014 35.1 3.5 27 182-208 129-156 (443)
443 3ez2_A Plasmid partition prote 25.4 45 0.0015 34.2 3.7 30 193-222 113-149 (398)
444 2j41_A Guanylate kinase; GMP, 25.3 39 0.0013 30.5 3.0 25 189-213 6-30 (207)
445 1f9v_A Kinesin-like protein KA 25.3 27 0.00093 35.3 1.9 25 184-208 79-104 (347)
446 2eyu_A Twitching motility prot 25.3 38 0.0013 32.6 2.9 37 186-222 22-60 (261)
447 3bfn_A Kinesin-like protein KI 25.3 34 0.0012 35.1 2.7 25 184-208 93-118 (388)
448 4a14_A Kinesin, kinesin-like p 25.2 44 0.0015 33.7 3.5 27 182-208 76-103 (344)
449 1x88_A Kinesin-like protein KI 25.1 36 0.0012 34.5 2.8 27 182-208 81-108 (359)
450 4eun_A Thermoresistant glucoki 25.1 41 0.0014 30.5 3.1 25 189-213 29-53 (200)
451 2qxy_A Response regulator; reg 24.9 1.6E+02 0.0056 24.0 6.8 16 566-581 105-120 (142)
452 1k68_A Phytochrome response re 24.8 1.2E+02 0.0041 24.5 5.9 26 486-511 2-27 (140)
453 1goj_A Kinesin, kinesin heavy 24.7 41 0.0014 34.0 3.1 26 183-208 74-100 (355)
454 3b9q_A Chloroplast SRP recepto 24.7 99 0.0034 30.3 5.9 34 191-224 102-136 (302)
455 3n53_A Response regulator rece 24.3 2.8E+02 0.0097 22.4 10.2 24 510-533 46-69 (140)
456 1cke_A CK, MSSA, protein (cyti 24.2 38 0.0013 31.3 2.7 24 191-214 7-30 (227)
457 3gk5_A Uncharacterized rhodane 24.2 47 0.0016 26.8 2.9 38 484-521 53-90 (108)
458 3kht_A Response regulator; PSI 24.2 1.7E+02 0.006 23.9 6.9 27 486-512 5-31 (144)
459 1m7g_A Adenylylsulfate kinase; 24.0 44 0.0015 30.6 3.1 26 189-214 25-50 (211)
460 1qde_A EIF4A, translation init 23.9 1.1E+02 0.0037 27.9 5.9 96 465-566 58-165 (224)
461 4b3f_X DNA-binding protein smu 23.7 1.1E+02 0.0036 33.8 6.6 51 467-517 214-264 (646)
462 1uj2_A Uridine-cytidine kinase 23.6 47 0.0016 31.5 3.3 24 191-214 24-47 (252)
463 1kgd_A CASK, peripheral plasma 23.4 51 0.0017 29.3 3.3 25 189-213 5-29 (180)
464 3pg5_A Uncharacterized protein 23.4 37 0.0013 34.4 2.6 29 194-222 7-36 (361)
465 3gt7_A Sensor protein; structu 23.3 1.7E+02 0.0058 24.5 6.7 30 485-514 6-35 (154)
466 3lua_A Response regulator rece 23.2 1.1E+02 0.0038 25.1 5.3 95 485-583 28-128 (140)
467 3q9s_A DNA-binding response re 23.2 3.8E+02 0.013 24.7 9.8 93 485-584 60-156 (249)
468 3f9v_A Minichromosome maintena 23.2 19 0.00066 39.4 0.4 23 191-213 329-351 (595)
469 2gkg_A Response regulator homo 23.2 2.7E+02 0.0092 21.7 8.0 17 565-581 108-124 (127)
470 3cob_A Kinesin heavy chain-lik 23.2 35 0.0012 34.7 2.3 28 181-208 71-99 (369)
471 3b6e_A Interferon-induced heli 23.2 84 0.0029 28.3 4.9 94 466-564 56-170 (216)
472 2oca_A DAR protein, ATP-depend 23.1 1.4E+02 0.0046 31.5 7.2 95 464-566 134-235 (510)
473 1vec_A ATP-dependent RNA helic 23.1 2.9E+02 0.0099 24.4 8.6 96 466-566 48-156 (206)
474 3iwh_A Rhodanese-like domain p 22.9 55 0.0019 26.2 3.0 36 485-520 55-90 (103)
475 1k66_A Phytochrome response re 22.9 1.5E+02 0.0052 24.3 6.3 26 486-511 6-31 (149)
476 2rjn_A Response regulator rece 22.8 2.1E+02 0.007 23.8 7.2 62 485-553 6-68 (154)
477 2bdt_A BH3686; alpha-beta prot 22.8 48 0.0016 29.6 3.0 20 192-211 5-24 (189)
478 2yan_A Glutaredoxin-3; oxidore 22.8 2.7E+02 0.0094 21.7 7.7 58 475-533 6-69 (105)
479 3ake_A Cytidylate kinase; CMP 22.7 49 0.0017 29.9 3.1 23 192-214 5-27 (208)
480 1tmy_A CHEY protein, TMY; chem 22.4 2.8E+02 0.0094 21.6 7.6 15 565-579 104-118 (120)
481 3m6a_A ATP-dependent protease 22.3 43 0.0015 36.2 2.9 26 189-214 108-133 (543)
482 3oaa_A ATP synthase subunit al 22.3 77 0.0026 33.6 4.7 60 179-238 150-215 (513)
483 3t0q_A AGR253WP; kinesin, alph 22.3 30 0.001 34.9 1.6 26 183-208 79-105 (349)
484 1jjv_A Dephospho-COA kinase; P 22.2 49 0.0017 30.0 3.0 20 192-211 5-24 (206)
485 1lkx_A Myosin IE heavy chain; 22.2 74 0.0025 35.4 4.8 33 181-213 84-118 (697)
486 2rep_A Kinesin-like protein KI 22.2 36 0.0012 34.8 2.1 26 183-208 109-135 (376)
487 3dzd_A Transcriptional regulat 21.9 1.5E+02 0.0051 29.9 6.8 44 184-227 147-190 (368)
488 1hv8_A Putative ATP-dependent 21.9 3.6E+02 0.012 26.2 9.9 96 465-566 51-157 (367)
489 1ry6_A Internal kinesin; kines 21.9 63 0.0022 32.7 3.9 25 184-208 78-104 (360)
490 4ehx_A Tetraacyldisaccharide 4 21.8 53 0.0018 32.6 3.3 19 198-216 47-65 (315)
491 2jtq_A Phage shock protein E; 21.6 1.1E+02 0.0038 23.0 4.5 37 484-521 39-76 (85)
492 2yxb_A Coenzyme B12-dependent 21.5 1.8E+02 0.0063 25.3 6.5 48 485-532 17-68 (161)
493 1rif_A DAR protein, DNA helica 21.4 1.7E+02 0.006 27.8 7.0 95 464-566 134-235 (282)
494 3to5_A CHEY homolog; alpha(5)b 21.4 2E+02 0.0068 24.1 6.5 71 508-581 55-132 (134)
495 2hf9_A Probable hydrogenase ni 21.3 1.2E+02 0.0041 27.6 5.6 33 190-222 39-71 (226)
496 2grj_A Dephospho-COA kinase; T 21.3 58 0.002 29.5 3.2 23 191-213 14-36 (192)
497 3hdv_A Response regulator; PSI 21.1 3E+02 0.01 22.1 7.7 72 511-582 53-127 (136)
498 2og2_A Putative signal recogni 20.8 1.3E+02 0.0044 30.4 5.9 33 191-223 159-192 (359)
499 2bbw_A Adenylate kinase 4, AK4 20.7 55 0.0019 30.8 3.1 26 189-214 27-52 (246)
500 1w9i_A Myosin II heavy chain; 20.6 83 0.0028 35.4 4.8 33 181-213 162-196 (770)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.3e-69 Score=608.32 Aligned_cols=451 Identities=25% Similarity=0.355 Sum_probs=357.8
Q ss_pred CChhhhhcCchHHHHHHHHHHH--------cCCCeeeecCCCCcHHHHHHHHHHhcCC--------CCcEEEEeCCcchH
Q 005980 166 IPAHIESKLLPFQRDGVRFALQ--------HGGRILLADEMGLGKTIQAIAVATCFRD--------VWPVLILTPSSLRL 229 (666)
Q Consensus 166 ~p~~~~~~L~p~Q~~~v~~~~~--------~~~~~iLad~~GlGKTi~ala~~~~~~~--------~~~~LIv~P~sl~~ 229 (666)
+|+.+...|||||++||+|++. .++|+||||+||+|||+++++++..+.. .+++|||||++++.
T Consensus 48 ~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~ 127 (644)
T 1z3i_X 48 VDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR 127 (644)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHH
T ss_pred eChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHH
Confidence 5677888999999999999973 4567999999999999999999887632 34699999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCCccc-eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccc
Q 005980 230 HWAAMIQQWLNIPPSEIVVVLSQLGGSNRSG-FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHF 308 (666)
Q Consensus 230 qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~ 308 (666)
||.+|+.+|++.. ..+.. +. ++..... ..+..............|+|+||+++......+....|++||+||||+
T Consensus 128 qW~~E~~~~~~~~-~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ 203 (644)
T 1z3i_X 128 NWYNEVGKWLGGR-VQPVA-ID--GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHR 203 (644)
T ss_dssp HHHHHHHHHHGGG-CCEEE-EC--SSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGG
T ss_pred HHHHHHHHHcCCC-eeEEE-Ee--CCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECcee
Confidence 9999999998631 12222 21 2221110 000000011111234569999999999988888888999999999999
Q ss_pred cCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCC--------
Q 005980 309 LKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGAS-------- 380 (666)
Q Consensus 309 ~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~-------- 380 (666)
+||..++.++++..+ +++++|+|||||++|++.|||++++|+.|+++++..+|..+|+.+...+...+..
T Consensus 204 ikn~~~~~~~al~~l--~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 281 (644)
T 1z3i_X 204 LKNSDNQTYLALNSM--NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281 (644)
T ss_dssp CCTTCHHHHHHHHHH--CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHH
T ss_pred cCChhhHHHHHHHhc--ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHH
Confidence 999999999999988 8999999999999999999999999999999999999999998775544433332
Q ss_pred -CHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHH----------------HhHHHhc
Q 005980 381 -NHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV----------------KGKIKAC 443 (666)
Q Consensus 381 -~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 443 (666)
+..+|+.++. ++++||++.++...||++.+..+++++++.|...|..+....... ....+.|
T Consensus 282 ~~~~~L~~~l~-~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 282 QKLQELISIVN-RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHH-HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 3456788887 799999999999999999999999999999999988776543211 1111111
Q ss_pred CCHHHHhhchhhH-H--HHHHhh---------hcCCccccHHHHHHHHHHHH-HcCCEEEEEeccHHHHHHHHHHHHhCC
Q 005980 444 KSEEEVQSLKFTE-K--NLINKI---------YTDSAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLKKK 510 (666)
Q Consensus 444 ~~~~~~~~~~~~~-~--~~~~~~---------~~~~~~~Kl~~l~~~l~~~~-~~g~KvlVF~~~~~~~~~l~~~L~~~g 510 (666)
.++..+....... . ...... .....++|+..+..++..+. ..++|+||||+++.+++.|...|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 1111110000000 0 000000 01124678888888887765 358999999999999999999999999
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCCCC-ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEE
Q 005980 511 VHCIRIDGGTPPASRQALVTEFQEKDD-VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVN 589 (666)
Q Consensus 511 ~~~~~i~G~~~~~~R~~~i~~F~~~~~-~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 589 (666)
+.+.+++|+++.++|++++++|++++. ..++|+|+++||+||||++|++||++|++|||..+.||+||+||+||+++|.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999999875 3589999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 590 VYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 590 v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
||+|++.||+||+|++++..|..+++.++++...
T Consensus 521 v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~ 554 (644)
T 1z3i_X 521 IYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD 554 (644)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999988654
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-66 Score=605.73 Aligned_cols=436 Identities=26% Similarity=0.381 Sum_probs=337.4
Q ss_pred hhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhc----CCCCcEEEEeCCcchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~----~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~ 243 (666)
..+|||||++||+||+ .+++++||||+||+|||+++++++..+ ...+|+|||||.+++.||.+|+.+|++ .
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHST--T
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCC--C
Confidence 5699999999999987 357799999999999999999998865 357899999999999999999999983 3
Q ss_pred CcEEEEEecCCCCCccce---eEEe-cCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHH
Q 005980 244 SEIVVVLSQLGGSNRSGF---TIVS-SNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAA 319 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~ 319 (666)
..+.+. ......+... .... ............|+|+||+++.+....+...+|++||+||||++||..++.+++
T Consensus 312 ~~v~~~--~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~ 389 (800)
T 3mwy_W 312 LNCICY--MGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYES 389 (800)
T ss_dssp CCEEEC--CCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHH
T ss_pred ceEEEE--eCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHH
Confidence 333322 1111111100 0000 001112234567999999999999888989999999999999999999999999
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k 399 (666)
+..+ +++++|+|||||++|++.|||++++|+.|+.|+....|....... ........|+.++. ++++||++
T Consensus 390 l~~l--~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~------~~~~~~~~L~~~l~-p~~lRR~k 460 (800)
T 3mwy_W 390 LNSF--KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDE------EQEEYIHDLHRRIQ-PFILRRLK 460 (800)
T ss_dssp HTTS--EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTT------HHHHHHHHHHHTTG-GGEEECCG
T ss_pred HHHh--hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccch------hHHHHHHHHHHHHh-HHHhhhhH
Confidence 9988 899999999999999999999999999999998766654221110 01123557888887 79999999
Q ss_pred hhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHH----------------HhHHHhcCCHHHHhhc-----------
Q 005980 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV----------------KGKIKACKSEEEVQSL----------- 452 (666)
Q Consensus 400 ~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~----------- 452 (666)
.++...||++.+..+++++++.+...|..+....... ....+.|.++..+...
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 9999999999999999999999999998776542110 0011111111000000
Q ss_pred hhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHh
Q 005980 453 KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEF 532 (666)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 532 (666)
........... ...++|+..+.++|..+...|+|+||||+++.+++.|...|...|+++.+++|+++..+|++++++|
T Consensus 541 ~~~~~~~~~~l--~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 541 KMTRENVLRGL--IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp -CCSHHHHHHH--HHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cccHHHHHHHh--hhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 00000000111 1247899999999999988999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 005980 533 QEKDD-VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611 (666)
Q Consensus 533 ~~~~~-~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~ 611 (666)
++++. +.++|+|+++||+||||+.|++||++|++|||..+.||+||+||+||+++|.||+|+++||+||+|++++.+|.
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 98653 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCC
Q 005980 612 ENLGQVLDGH 621 (666)
Q Consensus 612 ~~~~~~l~~~ 621 (666)
.+...+++++
T Consensus 699 ~l~~~vi~~~ 708 (800)
T 3mwy_W 699 ILEYAIISLG 708 (800)
T ss_dssp TSCC------
T ss_pred HHHHHHHccC
Confidence 9888887654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.4e-65 Score=565.47 Aligned_cols=429 Identities=25% Similarity=0.380 Sum_probs=348.6
Q ss_pred ChhhhhcCchHHHHHHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhc
Q 005980 167 PAHIESKLLPFQRDGVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLN 240 (666)
Q Consensus 167 p~~~~~~L~p~Q~~~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~ 240 (666)
|..+...|+|||++|+.|+. ..++++||||+||+|||+++++++..+. ..+++|||||++++.||.+|+.+|++
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 67788899999999999986 4577899999999999999999988764 35789999999999999999999984
Q ss_pred CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHh
Q 005980 241 IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAAT 320 (666)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~ 320 (666)
...+.+. . ++... ....+..|+|+||+.+..... +....|++||+||||+++|..++.++++
T Consensus 111 --~~~v~~~--~-g~~~~------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l 172 (500)
T 1z63_A 111 --HLRFAVF--H-EDRSK------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAV 172 (500)
T ss_dssp --TSCEEEC--S-SSTTS------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHH
T ss_pred --CceEEEE--e-cCchh------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHH
Confidence 2233222 1 11111 111245689999999986654 6677999999999999999999999999
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
..+ .++++|+|||||++|++.|+|++++|+.|+.++++..|...|+.+...+ +.....+|..++. ++++||++.
T Consensus 173 ~~l--~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~---~~~~~~~l~~~l~-~~~lrr~k~ 246 (500)
T 1z63_A 173 KEL--KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG---DNMAKEELKAIIS-PFILRRTKY 246 (500)
T ss_dssp HTS--CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT---CHHHHHHHHHHHT-TTEECCCTT
T ss_pred Hhh--ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc---cHHHHHHHHHHHh-hHeeeeccc
Confidence 887 7899999999999999999999999999999999999999998764332 2234567888887 799999987
Q ss_pred h--hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhh-----------cCC
Q 005980 401 D--VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIY-----------TDS 467 (666)
Q Consensus 401 ~--v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 467 (666)
+ +...||++.+..+++++++.+...|........... ........... .......+.+.. ...
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~lr~~~~~p~l~~~~~~~~~ 322 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI---DSVTGIKRKGM-ILSTLLKLKQIVDHPALLKGGEQSVR 322 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT---TTCCTHHHHHH-HHHHHHHHHHHTTCTHHHHCSCCCST
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH---HhhhcccchHH-HHHHHHHHHHHhCCHHHhcCccchhh
Confidence 6 678999999999999999999988887665432110 00000000000 000000011111 123
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
.++|+..+.+++.+....++|+||||++..+++.+...|... |+.+..++|+++..+|++++++|++++++.++|+|++
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 578999999999999889999999999999999999999986 9999999999999999999999999976778999999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
++++|+||+.|++||++|++|||..+.||+||++|+||+++|.||+|++++|+||+|++++..|..+++.++++.+.
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~ 479 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDS 479 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTG
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.5e-51 Score=483.43 Aligned_cols=434 Identities=19% Similarity=0.238 Sum_probs=322.5
Q ss_pred hhcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcE
Q 005980 171 ESKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFR---DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i 246 (666)
...|+|||.+++.|++.+ ++++||||+||+|||++|++++..+. ..+++|||||++|+.||..|+.++++++.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v--- 227 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRF--- 227 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHSCCCC---
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHhCCCE---
Confidence 468999999999999874 56799999999999999999887653 34589999999999999999999986442
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH---HHHhcCCccEEEEcCccccCChhHH---HHHHh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ---NILMSSNFKIVIADESHFLKNAQAK---RTAAT 320 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~---~~l~~~~~~~vIiDEaH~~kn~~s~---~~~~~ 320 (666)
.++ . +..... .............|+|+||+.+.+.. ..+...+|++||+||||+++|.++. .++.+
T Consensus 228 ~v~-~---~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 228 ALF-D---DERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp EEC-C---HHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred EEE-c---cchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 121 1 111000 00011122335679999999997642 4466779999999999999987644 36667
Q ss_pred hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccc---------------------cc---
Q 005980 321 LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFG---------------------IY--- 376 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~---------------------~~--- 376 (666)
..+..+++++|+|||||++|++.|+|++++++.|+.+++...|...++...... ..
T Consensus 300 ~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 300 EQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred HHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 766667889999999999999999999999999999999998887653211000 00
Q ss_pred ---------------c-CCCCHHHHHHHhh----hhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHH
Q 005980 377 ---------------Q-GASNHEELHNLMK----ATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVV 436 (666)
Q Consensus 377 ---------------~-~~~~~~~l~~ll~----~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 436 (666)
. .......+..++. ..+++|+.+..+ ..+|.+....+.+++++.....|......
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~---- 454 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIM---- 454 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHT----
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhh----
Confidence 0 0011122333332 235566666666 58899999999999998876665432110
Q ss_pred HhHHHhcCCHHHHhhchhhHHHHHHh-----hhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh-CC
Q 005980 437 KGKIKACKSEEEVQSLKFTEKNLINK-----IYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK-KK 510 (666)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~-~g 510 (666)
...................... ......+.|+..+.+++.. ..+.|+||||++..+++.+...|.. .|
T Consensus 455 ----~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g 528 (968)
T 3dmq_A 455 ----GARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREG 528 (968)
T ss_dssp ----TCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTC
T ss_pred ----hhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcC
Confidence 0000000000000000000000 0112346799999999987 5799999999999999999999995 59
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 511 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 511 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
+++..+||+++..+|..++++|+++++...+|++|+++++|+|++.|++||++|++|||..+.|++||++|.||++.|.+
T Consensus 529 ~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v 608 (968)
T 3dmq_A 529 IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQI 608 (968)
T ss_dssp CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEE
Confidence 99999999999999999999999997446678899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCccccc
Q 005980 591 YYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 626 (666)
Q Consensus 591 ~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~~~~ 626 (666)
|+++.++|+|++|++.+.+|.+.+...+.+.....+
T Consensus 609 ~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 609 HVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp EEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred EEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 999999999999999999998877766665544433
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-45 Score=403.05 Aligned_cols=419 Identities=18% Similarity=0.199 Sum_probs=281.8
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.+|+|||.+++.+++.. ++|++++||+|||+++++++..+ ....++|||||+ +|+.||.+++.+|++.+...+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HCCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 57999999999999985 88999999999999999887765 347899999999 89999999999998765545544
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--HHhcCCccEEEEcCccccCChhHHHH-HHhhhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--ILMSSNFKIVIADESHFLKNAQAKRT-AATLPIIK 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~~~-~~~~~l~~ 325 (666)
+.+......+ . .......|+|+||+.+..... .+...+|++||+||||++++...... ........
T Consensus 86 ~~g~~~~~~~--~---------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 86 LTGEKSPEER--S---------KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp ECSCSCHHHH--H---------HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred eeCCcchhhh--h---------hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 3321111100 0 001134589999999987654 33456899999999999987533222 22222223
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCC---CCHHHHhhhhhcCccccc--ccCCCCHHHHHHHhhhhhhhhehhh
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVY---KNVHEYGNRYCKGGVFGI--YQGASNHEELHNLMKATVMIRRLKK 400 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~---~~~~~f~~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~lrr~k~ 400 (666)
...++++|||||. ++..+++.++.++..... .....+...|........ .........+...+. ..+.++++.
T Consensus 155 ~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 232 (494)
T 1wp9_A 155 KNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLR-EMLRDALKP 232 (494)
T ss_dssp SSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 5788999999999 778888888888875422 222233333333221111 122233455666666 577777777
Q ss_pred hhhhcCCcccEEEEEecCCHHHHHHHHHHHHHH---------------------HHHHhHHHhcCCHHHHhhch------
Q 005980 401 DVLAQLPVKRRQQVFLDVAEKDMRQIYALFREL---------------------EVVKGKIKACKSEEEVQSLK------ 453 (666)
Q Consensus 401 ~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~------ 453 (666)
.....+..... ..++..........+... ........ ...........
T Consensus 233 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 233 LAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLE-TQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHh
Confidence 76665553321 122222221111100000 00000000 00000000000
Q ss_pred ------------h---hHHHHH----HhhhcCCccccHHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHhCCce
Q 005980 454 ------------F---TEKNLI----NKIYTDSAEAKIPAVLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLKKKVH 512 (666)
Q Consensus 454 ------------~---~~~~~~----~~~~~~~~~~Kl~~l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~g~~ 512 (666)
. ...... ........++|+..+.++|.... ..+.|+||||++..+++.+.+.|...|++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 387 (494)
T 1wp9_A 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK 387 (494)
T ss_dssp HHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC
Confidence 0 000000 00111256789999999999876 46899999999999999999999999999
Q ss_pred EEEEEC--------CCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCC
Q 005980 513 CIRIDG--------GTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ 584 (666)
Q Consensus 513 ~~~i~G--------~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq 584 (666)
+..++| +++..+|++++++|++++ ..+|++|+++++|+|+++|++||++|++|||..+.||+||++|.|+
T Consensus 388 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 388 AKRFVGQASKENDRGLSQREQKLILDEFARGE--FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp EEEECCSSCC-------CCHHHHHHHHHHHTS--CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred cEEEeccccccccccCCHHHHHHHHHHHhcCC--ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 999999 899999999999999887 4568899999999999999999999999999999999999999998
Q ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 005980 585 VSSVNVYYLLANDTVDDIVWDVVRSKLENLG 615 (666)
Q Consensus 585 ~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~ 615 (666)
+.+|.|++++|+||.++..+..|.+++.
T Consensus 466 ---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 466 ---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp ---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred ---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999987664
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.2e-43 Score=383.34 Aligned_cols=415 Identities=17% Similarity=0.172 Sum_probs=281.2
Q ss_pred cCCCcccccccceeeecCcchhHHHHHHHHhcCcceeeccccHHHHHHHHhcccCCchhhhccCCChhhhhcCchHHHHH
Q 005980 102 KIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDG 181 (666)
Q Consensus 102 ~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~p~Q~~~ 181 (666)
-.+...|+...+.|..+...+..+.+.+.+. +..+.-.... ...+ +.++ ....|+|||.++
T Consensus 41 ~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~------------~~~~----~~~~--~~~~l~~~Q~~a 101 (472)
T 2fwr_A 41 HVPHAKFDSRSGTYRALAFRYRDIIEYFESN-GIEFVDNAAD------------PIPT----PYFD--AEISLRDYQEKA 101 (472)
T ss_dssp CCSSCEEETTTTEEEEEGGGHHHHHHHHHHT-TCCEEEESCC------------CCCC----CCCC--CCCCBCHHHHHH
T ss_pred CCCcccccchhcceeccHHHHHHHHHHHHHc-CCCccccccc------------ccCc----cccc--CCCCcCHHHHHH
Confidence 4567889999999999988888887777764 4432211110 0000 0111 235799999999
Q ss_pred HHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccc
Q 005980 182 VRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSG 260 (666)
Q Consensus 182 v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~ 260 (666)
+.+++.. +++|++++||+|||++++.++... ..++|||||+ +|+.||.+++.+| +.. .+.++. +...
T Consensus 102 i~~i~~~-~~~ll~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~-~~~--~v~~~~----g~~~-- 169 (472)
T 2fwr_A 102 LERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIF-GEE--YVGEFS----GRIK-- 169 (472)
T ss_dssp HHHHTTT-TEEEEECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGG-CGG--GEEEBS----SSCB--
T ss_pred HHHHHhc-CCEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhC-CCc--ceEEEC----CCcC--
Confidence 9998874 468999999999999999888876 5799999999 9999999999994 321 132221 1111
Q ss_pred eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCC
Q 005980 261 FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALS 340 (666)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n 340 (666)
....|+|+||+.+......+. .+|++||+||||++.+.......... .+.++++|||||..+
T Consensus 170 -------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~~~~~~~----~~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 170 -------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYVQIAQMS----IAPFRLGLTATFERE 231 (472)
T ss_dssp -------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTHHHHHTC----CCSEEEEEESCCCCT
T ss_pred -------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHHHHHHhc----CCCeEEEEecCccCC
Confidence 124588999999987766553 46999999999999988765433222 678999999999765
Q ss_pred ChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh-hcCCcccEEEEEecCC
Q 005980 341 RPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL-AQLPVKRRQQVFLDVA 419 (666)
Q Consensus 341 ~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~-~~lp~~~~~~v~~~~~ 419 (666)
+..+ ..+..++. +.+.+....++. ..+++.....+.++++
T Consensus 232 ~~~~--------------------------------------~~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 272 (472)
T 2fwr_A 232 DGRH--------------------------------------EILKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLA 272 (472)
T ss_dssp TSGG--------------------------------------GSHHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCC
T ss_pred CCHH--------------------------------------HHHHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCC
Confidence 4221 11222222 223333333332 2366666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhc-CCHHHHhhc------------hhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 420 EKDMRQIYALFRELEVVKGKIKAC-KSEEEVQSL------------KFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
+.+...|..+...+.......... ......... ....... ........+.|+..+.+++.. ..+
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~--~~~ 349 (472)
T 2fwr_A 273 EDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEE-ARRIAFNSKNKIRKLREILER--HRK 349 (472)
T ss_dssp HHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHH-HHHHHHSCSHHHHHHHHHHHH--TSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHH-HHHHhhcChHHHHHHHHHHHh--CCC
Confidence 888777665544332211100000 000000000 0000000 011122456789999999887 578
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCC
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
.|+||||++..+++.+.+.|. +..++|+++..+|++++++|++++ ..+|++|+++++|+|++.+++||+++++
T Consensus 350 ~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~--~~vLv~T~~~~~Gldlp~~~~Vi~~~~~ 422 (472)
T 2fwr_A 350 DKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR--FRAIVSSQVLDEGIDVPDANVGVIMSGS 422 (472)
T ss_dssp SCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS--CSBCBCSSCCCSSSCSCCBSEEEEECCS
T ss_pred CcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC--CCEEEEcCchhcCcccccCcEEEEECCC
Confidence 999999999999999999884 457899999999999999999977 4567899999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCC-CcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 005980 567 WTPGDLIQAEDRAHRIGQV-SSVNVYYLLANDTVDDIVWDVVRSKLENL 614 (666)
Q Consensus 567 wnp~~~~Qa~gR~~R~Gq~-~~V~v~~lv~~~tiee~i~~~~~~K~~~~ 614 (666)
||+..+.|++||++|.|+. +.|.+|+|++++|+||++..+.++|.+.+
T Consensus 423 ~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 423 GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 9999999999999999998 78999999999999999999988876654
No 7
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.3e-37 Score=340.18 Aligned_cols=398 Identities=15% Similarity=0.178 Sum_probs=266.5
Q ss_pred ccccccccee----eecCcchhHHHHHHHHhcCcceeecccc----HHHHHHHHhcccCCchhhhccCCChhhhhcCchH
Q 005980 106 ATWNAKERLW----TFPVPFLSSAEKVLSEISGYNVEIENLH----PLVQRAIASASAAPDLREKYDQIPAHIESKLLPF 177 (666)
Q Consensus 106 ~~w~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~p~ 177 (666)
+.|+...+.| .+|.+.++.+.+++++. |+.+.+.... ++....++...... .-.+..-..+|+||
T Consensus 45 ~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~w~~~~------~f~~~~~~~~l~~~ 117 (510)
T 2oca_A 45 GNWDGRIRLLDYNRLLPFGLVGQIKKFCDNF-GYKAWIDPQINEKEELSRKDFDEWLSKL------EIYSGNKRIEPHWY 117 (510)
T ss_dssp SSCCSEEESCCTTCEEEGGGGGGHHHHHHHH-TCCEEECGGGSCCCSCCHHHHHHHHHTC------CEEETTEEECCCHH
T ss_pred CccCceEeecccCCccccCcHHHHHHHHHHc-CCeEEEccCCCCCCCCCHHHHHHHHhhc------ccccCCCCCCCCHH
Confidence 5688766666 57778888887777765 5555443210 00001111000000 00000113489999
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
|.+++.+++.. .+++++++||+|||++++.++.... ..+++|||||+ +|..||.+++.+|...+...+..+.....
T Consensus 118 Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~ 196 (510)
T 2oca_A 118 QKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS 196 (510)
T ss_dssp HHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCC
T ss_pred HHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCc
Confidence 99999999874 5789999999999999987766532 33499999999 79999999999986544334433322111
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEee
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLS 334 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLT 334 (666)
... .......|+|+||+.+....... ..+|++||+||||++.+.. ...+...+..+.++++||
T Consensus 197 --~~~-----------~~~~~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~~---~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 197 --KDD-----------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGKS---ISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp --TTG-----------GGCTTCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHHH---HHHHGGGCTTCCEEEEEE
T ss_pred --ccc-----------ccccCCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCccc---HHHHHHhcccCcEEEEEE
Confidence 110 01234569999999887553222 2378999999999998743 333433334678999999
Q ss_pred ccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEE
Q 005980 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQV 414 (666)
Q Consensus 335 gTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v 414 (666)
||| .+...+++.+..++++..+... .. .++. ...+++.....+
T Consensus 260 ATp-~~~~~~~~~~~~~~~~~~~~~~------------------~~------~~~~------------~~~l~~~~~~~~ 302 (510)
T 2oca_A 260 GSL-RDGKANIMQYVGMFGEIFKPVT------------------TS------KLME------------DGQVTELKINSI 302 (510)
T ss_dssp SCG-GGCSSCHHHHHHHHCSEECCCC------------------CC---------------------------CCEEEEE
T ss_pred eCC-CCCcccHHHhHHhhCCeEEeeC------------------HH------HHhh------------CCcCCCceEEEE
Confidence 999 4454556666665555321100 00 0000 124566667777
Q ss_pred EecCCHHHHH-----HHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHc-CCE
Q 005980 415 FLDVAEKDMR-----QIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA-GCK 488 (666)
Q Consensus 415 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~-g~K 488 (666)
.+.+++.... .|...+ .... ....|...+.+.+...... +.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 350 (510)
T 2oca_A 303 FLRYPDEFTTKLKGKTYQEEI------------------------------KIIT--GLSKRNKWIAKLAIKLAQKDENA 350 (510)
T ss_dssp EEECCHHHHHHHTTCCHHHHH------------------------------HHHH--TCHHHHHHHHHHHHHHHTTTCEE
T ss_pred eecCChHHhccccccchHHHH------------------------------HHHh--ccHHHHHHHHHHHHHHHhcCCCe
Confidence 7777765431 111100 0000 1224666677777776555 456
Q ss_pred EEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec-cccccccCcccCCEEEEecCCC
Q 005980 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM-KAGGVGLTLTAASTVIFAELSW 567 (666)
Q Consensus 489 vlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st-~a~~~GlnL~~a~~VI~~d~~w 567 (666)
+|||+. ...++.|.+.|...+.++..++|+++..+|+++++.|++++ ..+|++| +++++|+|++.+++||+++++|
T Consensus 351 ~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~GiDip~v~~vi~~~~~~ 427 (510)
T 2oca_A 351 FVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFSTGISVKNLHHVVLAHGVK 427 (510)
T ss_dssp EEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHHSCCCCSEEEEEESSCCC
T ss_pred EEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhcccccccCcEEEEeCCCC
Confidence 677776 88899999999999889999999999999999999999887 3466666 9999999999999999999999
Q ss_pred CcchhhhhhhhhhccCCCC-cEEEEEEEeCCCHH
Q 005980 568 TPGDLIQAEDRAHRIGQVS-SVNVYYLLANDTVD 600 (666)
Q Consensus 568 np~~~~Qa~gR~~R~Gq~~-~V~v~~lv~~~tie 600 (666)
++..+.|++||++|.|+.+ .|.||.++...++.
T Consensus 428 s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~ 461 (510)
T 2oca_A 428 SKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVK 461 (510)
T ss_dssp SCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBC
T ss_pred CHHHHHHHHhcccccCCCCceEEEEEeecchhhh
Confidence 9999999999999999987 79999999876643
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5e-37 Score=344.79 Aligned_cols=425 Identities=13% Similarity=0.134 Sum_probs=208.4
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CC-----CCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RD-----VWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
.+|+|||.+++.+++. +.++|++++||+|||++++..+... .. ..++|||||+ +|+.||.+++.++++....
T Consensus 6 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp --CCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4799999999999987 6689999999999999988776543 21 5679999999 8999999999999742222
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H-hcCCccEEEEcCccccCChhHHHHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L-MSSNFKIVIADESHFLKNAQAKRTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 321 (666)
.+..+.+ +....... ........|+|+||+.+...... + ...++++||+||||++.+.+..... +.
T Consensus 85 ~~~~~~g--~~~~~~~~--------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~-~~ 153 (556)
T 4a2p_A 85 SVQGISG--ENFSNVSV--------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL-MT 153 (556)
T ss_dssp CEEECCC--C-----CH--------HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHH-HH
T ss_pred eEEEEeC--CCCcchhH--------HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHH-HH
Confidence 2322211 11111000 00011345899999999876543 2 3346899999999999887642221 11
Q ss_pred hhh-------hhcceEEEeeccCCCCChHHHHH-------HHHHhCCCCCC----CHHHHhhhhhcCcccccccCCCCHH
Q 005980 322 PII-------KKAQYALLLSGTPALSRPIELFK-------QLEALYPDVYK----NVHEYGNRYCKGGVFGIYQGASNHE 383 (666)
Q Consensus 322 ~l~-------~~~~~~llLTgTP~~n~~~el~~-------~l~~l~p~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~ 383 (666)
.++ ....++++|||||..++..++.. +...++...+. ....+......+.............
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 233 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCC
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCC
Confidence 111 12367999999998876544333 33333322111 1111111111111000000000111
Q ss_pred HHHHHhhhhhhhhehhhhhhhcCCcccEEEE-EecCCHHHHHHHHHHHHHHHHHHhH---------------H-------
Q 005980 384 ELHNLMKATVMIRRLKKDVLAQLPVKRRQQV-FLDVAEKDMRQIYALFRELEVVKGK---------------I------- 440 (666)
Q Consensus 384 ~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~------- 440 (666)
.+...+.. +...+.......+.-...... ....... .|......+...... .
T Consensus 234 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 234 PFAAIISN--LMSETEALMRTIYSVDTLSQNSKKDFGTQ---NYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 308 (556)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHCC---------CCCSSH---HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHhhhhhhhcccccccchh---hHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 11111110 111111111000100000000 0001111 111111110000000 0
Q ss_pred ---------HhcCCHHHH-hhc------------hhhHHHHHH----------h--hhcCCccccHHHHHHHHHHHH--H
Q 005980 441 ---------KACKSEEEV-QSL------------KFTEKNLIN----------K--IYTDSAEAKIPAVLDYLETVI--E 484 (666)
Q Consensus 441 ---------~~~~~~~~~-~~~------------~~~~~~~~~----------~--~~~~~~~~Kl~~l~~~l~~~~--~ 484 (666)
......... ..+ ......+.. . ......++|+..+.++|.+.. .
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~ 388 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 388 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCC
Confidence 000000000 000 000000000 0 011124789999999998876 5
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhC------------CceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEeccccccc
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKK------------KVHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~G 551 (666)
.+.|+||||+++.+++.|.+.|... |..+..++|+++..+|.+++++|++ +. ..+|++|+++++|
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~--~~vLvaT~~~~~G 466 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVADEG 466 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------------CCEEEEEC-----
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCc--eEEEEEcCchhcC
Confidence 6899999999999999999999876 5556666778999999999999999 55 4578999999999
Q ss_pred cCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005980 552 LTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620 (666)
Q Consensus 552 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~ 620 (666)
||+++|++||+||+|||+..+.||+|| +| .+++.+|.|+++++++++ +.....|..++..++..
T Consensus 467 iDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 467 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp ------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999 55 467888999999999998 55666776777666553
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-36 Score=337.63 Aligned_cols=427 Identities=15% Similarity=0.160 Sum_probs=228.7
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CC-----CCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RD-----VWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
.+|+|||.+++.+++. +.++|++++||+|||++++..+... .. ..++|||||+ .|+.||.+++.++++....
T Consensus 3 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhC-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 3689999999999986 6789999999999999988776543 11 6789999999 8999999999999853333
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H-hcCCccEEEEcCccccCChhHHHHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L-MSSNFKIVIADESHFLKNAQAKRTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 321 (666)
.+..+.+ +........ .......|+|+||+.+...... + ...+|++||+||||++.+..+.......
T Consensus 82 ~~~~~~g--~~~~~~~~~--------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 151 (555)
T 3tbk_A 82 NIASISG--ATSDSVSVQ--------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFR 151 (555)
T ss_dssp CEEEECT--TTGGGSCHH--------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHH
T ss_pred EEEEEcC--CCcchhhHH--------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHH
Confidence 3333221 111110000 0011245889999999876643 2 2346899999999999887643222111
Q ss_pred hhhh-------hcceEEEeeccCCCCChHHHHH-------HHHHhCCCCCC----CHHHHhhhhhcCcccccccCCCCHH
Q 005980 322 PIIK-------KAQYALLLSGTPALSRPIELFK-------QLEALYPDVYK----NVHEYGNRYCKGGVFGIYQGASNHE 383 (666)
Q Consensus 322 ~l~~-------~~~~~llLTgTP~~n~~~el~~-------~l~~l~p~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~ 383 (666)
.+.. ...++++|||||..++..++.. +...++...+. ....+...+..+.............
T Consensus 152 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 231 (555)
T 3tbk_A 152 YLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSN 231 (555)
T ss_dssp HHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCC
T ss_pred HHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccC
Confidence 1111 2257999999998887444433 33444432111 1222222111111111111111122
Q ss_pred HHHHHhhhhhhhhehh---hhhhhcCCcccEEEEEecCCHHHH-----------------------HHHHHHHHHHHHH-
Q 005980 384 ELHNLMKATVMIRRLK---KDVLAQLPVKRRQQVFLDVAEKDM-----------------------RQIYALFRELEVV- 436 (666)
Q Consensus 384 ~l~~ll~~~~~lrr~k---~~v~~~lp~~~~~~v~~~~~~~~~-----------------------~~~~~~~~~~~~~- 436 (666)
.+...+.. ++.++. +.+...++..... .......... ..+..+......+
T Consensus 232 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 232 TFKCIISQ--LMKETEKLAKDVSEELGKLFQI-QNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp HHHHHHHH--HHHHHHHHHHTSCHHHHGGGGC-CSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHhhhhhhhc-ccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 22222221 111111 1111100000000 0000000000 0000000000000
Q ss_pred --HhH--HHhcCCHHHH----hh---------chhhHHHHH----------Hh--hhcCCccccHHHHHHHHHHHHHc--
Q 005980 437 --KGK--IKACKSEEEV----QS---------LKFTEKNLI----------NK--IYTDSAEAKIPAVLDYLETVIEA-- 485 (666)
Q Consensus 437 --~~~--~~~~~~~~~~----~~---------~~~~~~~~~----------~~--~~~~~~~~Kl~~l~~~l~~~~~~-- 485 (666)
... .......... .. ......... .. ......+.|+..+.++|......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 000 0000000000 00 000000000 00 01113468999999999887644
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCC------------ceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEecccccccc
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKK------------VHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGL 552 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g------------~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~Gl 552 (666)
+.|+||||++..+++.|.+.|...| ..+..++|+++..+|.+++++|++ +. ..+|++|+++++||
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~--~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD--NNILIATSVADEGI 466 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------C--CSEEEECCCTTCCE
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCC--eeEEEEcchhhcCC
Confidence 5899999999999999999998864 355566679999999999999998 55 44688999999999
Q ss_pred CcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhc
Q 005980 553 TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 619 (666)
Q Consensus 553 nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~ 619 (666)
|+++|++||+||+|||+..+.||+|| |+.+.+.+|.|+++++.++. ..+...|..++...+.
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999 55588999999999999887 3444444455555543
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-36 Score=353.92 Aligned_cols=425 Identities=14% Similarity=0.167 Sum_probs=218.4
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-C-----CCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-D-----VWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
...|+|||.+++.+++. |.++|++++||+|||++++..+.... . ..++|||||+ +|+.||.+++.++++...
T Consensus 246 ~~~~r~~Q~~ai~~il~-g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (936)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 45799999999999987 67899999999999999888776542 2 5789999998 799999999999985333
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H-hcCCccEEEEcCccccCChhHHHHHHh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L-MSSNFKIVIADESHFLKNAQAKRTAAT 320 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~ 320 (666)
..+..+.++. ...... ........|+|+||+.+...... + ...+|++||+||||++.+..+.... +
T Consensus 325 ~~v~~~~G~~--~~~~~~--------~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i-~ 393 (936)
T 4a2w_A 325 YSVQGISGEN--FSNVSV--------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL-M 393 (936)
T ss_dssp CCEEEECCC-------CC--------HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH-H
T ss_pred ceEEEEECCc--chhhHH--------HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH-H
Confidence 3333332211 111000 00011345899999999876542 1 2235899999999999987542221 1
Q ss_pred hhhh-------hhcceEEEeeccCCCCChHHHHHHH-------HHhCCCCC----CCHHHHhhhhhcCcccccccCCCCH
Q 005980 321 LPII-------KKAQYALLLSGTPALSRPIELFKQL-------EALYPDVY----KNVHEYGNRYCKGGVFGIYQGASNH 382 (666)
Q Consensus 321 ~~l~-------~~~~~~llLTgTP~~n~~~el~~~l-------~~l~p~~~----~~~~~f~~~~~~~~~~~~~~~~~~~ 382 (666)
..+. ....++++|||||..++..++...+ ..++...+ .....+...+..+............
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC
Confidence 1221 1237899999999887764444333 33443221 1222332222222111111111111
Q ss_pred HHHHHHhhhhhhhhehh---hhhhh--cCCcccEEEEEecCCH-----------------------HHHHHHHHHHHH--
Q 005980 383 EELHNLMKATVMIRRLK---KDVLA--QLPVKRRQQVFLDVAE-----------------------KDMRQIYALFRE-- 432 (666)
Q Consensus 383 ~~l~~ll~~~~~lrr~k---~~v~~--~lp~~~~~~v~~~~~~-----------------------~~~~~~~~~~~~-- 432 (666)
..+...+.. +..++. +++.. .++.. -...+.. .....+..+...
T Consensus 474 ~~~~~~l~~--l~~~i~~~~~~~l~~~~l~~~----~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 474 NPFAAIISN--LMSETEALMRTIAYVDTLSQN----SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (936)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHC----------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH--HHHHHHHHHHHHHhhhhhhhc----cccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 111111110 000000 01000 00000 0000000 000001000000
Q ss_pred -HHHHHh----------------------HHHhcCCHHHHhhch---hhHHHHHHhh--hcCCccccHHHHHHHHHHHH-
Q 005980 433 -LEVVKG----------------------KIKACKSEEEVQSLK---FTEKNLINKI--YTDSAEAKIPAVLDYLETVI- 483 (666)
Q Consensus 433 -~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~Kl~~l~~~l~~~~- 483 (666)
+..+.. .............+. ......+... .....++|+..+.++|.+..
T Consensus 548 ~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (936)
T 4a2w_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (936)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc
Confidence 000000 000000000000000 0000000001 11234789999999998864
Q ss_pred -HcCCEEEEEeccHHHHHHHHHHHHhC------------CceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEeccccc
Q 005980 484 -EAGCKFLIFAHHQPMLDAIHQLFLKK------------KVHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGG 549 (666)
Q Consensus 484 -~~g~KvlVF~~~~~~~~~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~ 549 (666)
..+.|+||||+++.+++.|.+.|... |..+..++|+++..+|.+++++|++ +. ..+|++|++++
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~--~~VLVaT~~~~ 705 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVAD 705 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------C--CSEEEEECC--
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCC--eeEEEEeCchh
Confidence 45799999999999999999999986 5566677888999999999999998 55 45789999999
Q ss_pred cccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005980 550 VGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~ 620 (666)
+|||+++|++||+||++||+..++||+|| +| .+++.+|.|++.+|++++.+ ....|..++..++..
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55 46778899999999999866 556666666665543
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.7e-36 Score=348.85 Aligned_cols=428 Identities=14% Similarity=0.151 Sum_probs=216.6
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CC-----CCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RD-----VWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
...|+|||.+++.+++. |.++|++++||+|||++++..+... .. ..++|||||+ +|+.||.+++.++++...
T Consensus 246 ~~~l~~~Q~~~i~~~l~-~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (797)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCHHHHHHHHHHHh-CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 45899999999999886 6789999999999999988776543 21 6789999998 799999999999985322
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H-hcCCccEEEEcCccccCChhHHHHHHh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L-MSSNFKIVIADESHFLKNAQAKRTAAT 320 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~ 320 (666)
..+..+.++. ...... ........|+|+||+.+...... + ...+|++||+||||++.+....... +
T Consensus 325 ~~v~~~~g~~--~~~~~~--------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i-~ 393 (797)
T 4a2q_A 325 YSVQGISGEN--FSNVSV--------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL-M 393 (797)
T ss_dssp CCEEEECCC-------CH--------HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHH-H
T ss_pred ceEEEEeCCc--chhhhH--------HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHH-H
Confidence 3333332211 111000 00112356899999999876542 1 2235799999999999886542221 1
Q ss_pred hhhh-------hhcceEEEeeccCCCCChHHHHH-------HHHHhCCCCC----CCHHHHhhhhhcCcccccccCCCCH
Q 005980 321 LPII-------KKAQYALLLSGTPALSRPIELFK-------QLEALYPDVY----KNVHEYGNRYCKGGVFGIYQGASNH 382 (666)
Q Consensus 321 ~~l~-------~~~~~~llLTgTP~~n~~~el~~-------~l~~l~p~~~----~~~~~f~~~~~~~~~~~~~~~~~~~ 382 (666)
..+. ....++++|||||..++..++.. +...++...+ .....+...+..+............
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 473 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSC
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCC
Confidence 1111 12377999999998876544333 3333443222 1222332222222211111111111
Q ss_pred HHHHHHhhhhhhhhehhhhhhhcCC--cccEEEEEecCCH-----------------------HHHHHHHHHHHH---HH
Q 005980 383 EELHNLMKATVMIRRLKKDVLAQLP--VKRRQQVFLDVAE-----------------------KDMRQIYALFRE---LE 434 (666)
Q Consensus 383 ~~l~~ll~~~~~lrr~k~~v~~~lp--~~~~~~v~~~~~~-----------------------~~~~~~~~~~~~---~~ 434 (666)
..+...+.. ++..+.......+. ..... ....+.. .....+..+... +.
T Consensus 474 ~~~~~~~~~--l~~~i~~~~~~~~~l~~l~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 550 (797)
T 4a2q_A 474 NPFAAIISN--LMSETEALMRTIYSVDTLSQN-SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 550 (797)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHC-------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH--HHHHHHHHHHHHHhhHHhhhh-ccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 111111110 00111100000000 00000 0000000 000111100000 00
Q ss_pred HHHhHH--HhcCCHHH----Hhh---------chhhHHHH----------HHh--hhcCCccccHHHHHHHHHHHH--Hc
Q 005980 435 VVKGKI--KACKSEEE----VQS---------LKFTEKNL----------INK--IYTDSAEAKIPAVLDYLETVI--EA 485 (666)
Q Consensus 435 ~~~~~~--~~~~~~~~----~~~---------~~~~~~~~----------~~~--~~~~~~~~Kl~~l~~~l~~~~--~~ 485 (666)
...... ........ +.. .......+ +.. ......++|+..+.++|.... ..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~ 630 (797)
T 4a2q_A 551 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 630 (797)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCC
Confidence 000000 00000000 000 00000000 000 011234789999999998755 46
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhC------------CceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEecccccccc
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKK------------KVHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGL 552 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~Gl 552 (666)
+.|+||||+++.+++.|.+.|... |..+..++|+++..+|.+++++|++ +. ..+|++|+++++||
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~--~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVADEGI 708 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C--CSEEEEECC-----
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC--ceEEEEcCchhcCC
Confidence 799999999999999999999874 5667778889999999999999999 55 45789999999999
Q ss_pred CcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005980 553 TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 620 (666)
Q Consensus 553 nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~ 620 (666)
|+++|++||+||+||||..+.||+|| +|. +++.+|.|+++++++++ +.....|..++..++..
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 554 77888999999999999 66666677777666543
No 12
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=7.4e-37 Score=308.38 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=162.7
Q ss_pred hhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhh-------hc
Q 005980 393 VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKI-------YT 465 (666)
Q Consensus 393 ~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 465 (666)
--+||+|++|..+||++.+..++|++++.|.+.|..+...................+.......+.+++.. ..
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~ 91 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQS 91 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCC
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 45799999999999999999999999999999999887664332110000000000000000000111000 01
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC-CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK-KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
...++|+..+.++|..+...++|+||||++..+++.|...|... |+.+.+++|+++..+|++++++|++++++.++|+|
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34678999999999999889999999999999999999999985 99999999999999999999999999777889999
Q ss_pred ccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhcCCcc
Q 005980 545 MKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 623 (666)
Q Consensus 545 t~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~~~l~~~~~ 623 (666)
|+++|+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+++.++++.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~ 250 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDS 250 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987643
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=328.99 Aligned_cols=420 Identities=15% Similarity=0.149 Sum_probs=235.4
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-------CCCcEEEEeCC-cchHHH-HHHHHHHhcCC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-------DVWPVLILTPS-SLRLHW-AAMIQQWLNIP 242 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-------~~~~~LIv~P~-sl~~qW-~~e~~~~~~~~ 242 (666)
..|+|||.+++.+++. |.++|++++||+|||++++..+..+. ..+++|||+|+ +|+.|| .+++.++++..
T Consensus 6 ~~l~~~Q~~~i~~il~-g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE-GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp -CCCHHHHHHHHHHHS-SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCccHHHHHHHHHHHh-CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 4799999999999998 66899999999999999988776431 12789999998 699999 99999998631
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH--------HHhcCCccEEEEcCccccCChhH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN--------ILMSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~--------~l~~~~~~~vIiDEaH~~kn~~s 314 (666)
..+..+.+.. ....... .......|+|+||+.+..... .+...+|++||+||||++.+...
T Consensus 85 -~~v~~~~g~~--~~~~~~~--------~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~ 153 (699)
T 4gl2_A 85 -YRVIGLSGDT--QLKISFP--------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 153 (699)
T ss_dssp -SCEEEEC------CCCCHH--------HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBS
T ss_pred -ceEEEEeCCc--chhhHHH--------hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccch
Confidence 2333332211 1110000 001235689999999986541 23345799999999999855321
Q ss_pred H--HHHHhhhh----hh---------hcceEEEeeccCCCCC-------hHHHHHHHHHhCCCCCCC----HHHHhhhhh
Q 005980 315 K--RTAATLPI----IK---------KAQYALLLSGTPALSR-------PIELFKQLEALYPDVYKN----VHEYGNRYC 368 (666)
Q Consensus 315 ~--~~~~~~~l----~~---------~~~~~llLTgTP~~n~-------~~el~~~l~~l~p~~~~~----~~~f~~~~~ 368 (666)
. ....+... .. ..+++++|||||..++ ..++..++..+++..... ...+.....
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~ 233 (699)
T 4gl2_A 154 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQ 233 (699)
T ss_dssp SCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSC
T ss_pred HHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcC
Confidence 1 11111100 00 3367999999999864 344555556666622211 122222111
Q ss_pred cCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHH--------------------------H
Q 005980 369 KGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEK--------------------------D 422 (666)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~--------------------------~ 422 (666)
.+...-..........+...+.. +..+..... .+.+. ...... .
T Consensus 234 ~p~~~~~~~~~~~~~~~~~~l~~--l~~~i~~~~--~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (699)
T 4gl2_A 234 EPCKKFAIADATREDPFKEKLLE--IMTRIQTYC--QMSPM------SDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEH 303 (699)
T ss_dssp CCEEEEEEEC-----CHHHHHHH--HHHHHHHHH--TCCCC------SCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHH
T ss_pred CCceEEEEcccccCChHHHHHHH--HHHHHHHHh--ccCcc------hhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 11100000000111111111110 000111110 11000 000000 0
Q ss_pred HHHHHHHHHHH------------HHHHhHHHhc--------------CCH--HHHhhchhhHHHHHHhhhc--CCccccH
Q 005980 423 MRQIYALFREL------------EVVKGKIKAC--------------KSE--EEVQSLKFTEKNLINKIYT--DSAEAKI 472 (666)
Q Consensus 423 ~~~~~~~~~~~------------~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~--~~~~~Kl 472 (666)
...|.....-. .......... ... ..+..........+..... ...+.|+
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~ 383 (699)
T 4gl2_A 304 LRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKL 383 (699)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 01110000000 0000000000 000 0000000000000011111 1145788
Q ss_pred HHHHHHHHHHHHc---CCEEEEEeccHHHHHHHHHHHHhC------CceEEEEECC--------CCHHHHHHHHHHhcCC
Q 005980 473 PAVLDYLETVIEA---GCKFLIFAHHQPMLDAIHQLFLKK------KVHCIRIDGG--------TPPASRQALVTEFQEK 535 (666)
Q Consensus 473 ~~l~~~l~~~~~~---g~KvlVF~~~~~~~~~l~~~L~~~------g~~~~~i~G~--------~~~~~R~~~i~~F~~~ 535 (666)
..+.++|...... +.++||||++..+++.|.+.|... |+++..++|+ ++..+|.+++++|+++
T Consensus 384 ~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g 463 (699)
T 4gl2_A 384 TKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG 463 (699)
T ss_dssp SCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC
Confidence 8888888876543 789999999999999999999987 8999999999 9999999999999998
Q ss_pred CCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 005980 536 DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLG 615 (666)
Q Consensus 536 ~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~~~ 615 (666)
+ ..+|++|+++++|||++++++||+||+|||+..+.||+||++|.| ..++.+...++.+...+.....+..++.
T Consensus 464 ~--~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 537 (699)
T 4gl2_A 464 K--INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMY 537 (699)
T ss_dssp ----CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHH
Confidence 7 557899999999999999999999999999999999999986654 4455556667655554444444444444
Q ss_pred hhhc
Q 005980 616 QVLD 619 (666)
Q Consensus 616 ~~l~ 619 (666)
..+.
T Consensus 538 ~~~~ 541 (699)
T 4gl2_A 538 KAIH 541 (699)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6e-33 Score=297.37 Aligned_cols=329 Identities=15% Similarity=0.211 Sum_probs=222.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C---CCCcEEEEeCC-cchHHHHHHHHHHhcCC-CCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R---DVWPVLILTPS-SLRLHWAAMIQQWLNIP-PSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~-~~~i 246 (666)
.|+|||.+++.+++. +.++++.++||+|||++++..+... . ...++||+||+ .|+.||.+++.++.... ...+
T Consensus 30 ~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 30 HPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp SCCHHHHHHHHHHTT-TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 599999999999887 5689999999999999987665543 2 24589999999 89999999999997532 2233
Q ss_pred EEEEecCCCCCc-cceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh--HHHHHHhh
Q 005980 247 VVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ--AKRTAATL 321 (666)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~ 321 (666)
..+. ++... ...... ......|+|+||+.+...... +...++++||+||||++.+.. ......+.
T Consensus 109 ~~~~---g~~~~~~~~~~~-------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 109 AVFF---GGLSIKKDEEVL-------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp EEEC---TTSCHHHHHHHH-------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred EEEe---CCCCHHHHHHHH-------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 3222 11111 000000 001235889999999875442 223478999999999997732 22333333
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.......+++++||||-.. ..++ + ..+... +..+. ....
T Consensus 179 ~~~~~~~~~i~~SAT~~~~-~~~~---~---------------~~~~~~---------------------~~~~~-~~~~ 217 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKE-IRPV---C---------------RKFMQD---------------------PMEIF-VDDE 217 (391)
T ss_dssp HTSCSSSEEEEEESSCCST-HHHH---H---------------HHHCSS---------------------CEEEE-CCCC
T ss_pred hhCCCCceEEEEEeeCCHH-HHHH---H---------------HHHcCC---------------------CeEEE-ecCc
Confidence 3333467889999998432 1111 1 111000 00000 0000
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
...........+.... ...|...+.+++..
T Consensus 218 --~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~l~~~l~~ 247 (391)
T 1xti_A 218 --TKLTLHGLQQYYVKLK------------------------------------------------DNEKNRKLFDLLDV 247 (391)
T ss_dssp --CCCCCTTCEEEEEECC------------------------------------------------GGGHHHHHHHHHHH
T ss_pred --cccCcccceEEEEEcC------------------------------------------------chhHHHHHHHHHHh
Confidence 0000001111111111 12345556666665
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
..+.++|||++...+++.+.+.|...|+.+..++|+++..+|.++++.|+++. ..+|++|+++++|+|++++++||
T Consensus 248 --~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~Gidi~~~~~Vi 323 (391)
T 1xti_A 248 --LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATNLFGRGMDIERVNIAF 323 (391)
T ss_dssp --SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESCCCSSCBCCTTEEEEE
T ss_pred --cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECChhhcCCCcccCCEEE
Confidence 37789999999999999999999999999999999999999999999999887 56789999999999999999999
Q ss_pred EecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 562 FAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 562 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
+++++|++..+.|++||++|.|+...+. .++... -|..++..+.++
T Consensus 324 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~~ 369 (391)
T 1xti_A 324 NYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQDR 369 (391)
T ss_dssp ESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHHH
Confidence 9999999999999999999999766554 344432 345555555544
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.7e-33 Score=321.71 Aligned_cols=413 Identities=13% Similarity=0.131 Sum_probs=212.2
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC--C----CCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR--D----VWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~--~----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
..|+|||.+++.+++. |.++|++++||+|||++++..+.... . .+++|||+|+ +|+.||.+++.++++....
T Consensus 12 ~~lr~~Q~~~i~~~l~-g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCccHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCc
Confidence 5799999999999987 67899999999999999887776431 1 2789999999 8999999999999843223
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--H-hcCCccEEEEcCccccCChhHHHHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--L-MSSNFKIVIADESHFLKNAQAKRTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 321 (666)
.+..+.++. ....... .......|+|+||+.+...... + ...+|++||+||||++.+..........
T Consensus 91 ~v~~~~g~~--~~~~~~~--------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 91 RVTGISGAT--AENVPVE--------QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp CEEEECSSS--CSSSCHH--------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred eEEEEeCCc--cccccHH--------HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 333332211 1111000 0012356899999999876543 2 2346899999999999877643322211
Q ss_pred hh-------hhhcceEEEeeccCCCCC-------hHHHHHHHHHhCCCCCCC---HHHHhhhhhcCcc-cccccCCCCHH
Q 005980 322 PI-------IKKAQYALLLSGTPALSR-------PIELFKQLEALYPDVYKN---VHEYGNRYCKGGV-FGIYQGASNHE 383 (666)
Q Consensus 322 ~l-------~~~~~~~llLTgTP~~n~-------~~el~~~l~~l~p~~~~~---~~~f~~~~~~~~~-~~~~~~~~~~~ 383 (666)
.+ .....++++|||||..++ ..+++.++..++...+.. .......|..... .-.........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 11 114588999999998554 344445555444433221 1122222221110 00000011111
Q ss_pred HHHHHhhhh-hhhhehhhhhhhcCCcccEEEEEecCCHHHH-----------------------HHHHHHHHHHHHHH--
Q 005980 384 ELHNLMKAT-VMIRRLKKDVLAQLPVKRRQQVFLDVAEKDM-----------------------RQIYALFRELEVVK-- 437 (666)
Q Consensus 384 ~l~~ll~~~-~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~-----------------------~~~~~~~~~~~~~~-- 437 (666)
.+...+... .-++.+...+..++.... ..-..+...... ..+..++.....+.
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSS-SCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 122222100 112222233322210000 000000000000 00000000000000
Q ss_pred -hH--HHhcCCHHH-H----------hh--chhhHH----------HHHHhhhc--CCccccHHHHHHHHHHHHH--cCC
Q 005980 438 -GK--IKACKSEEE-V----------QS--LKFTEK----------NLINKIYT--DSAEAKIPAVLDYLETVIE--AGC 487 (666)
Q Consensus 438 -~~--~~~~~~~~~-~----------~~--~~~~~~----------~~~~~~~~--~~~~~Kl~~l~~~l~~~~~--~g~ 487 (666)
.. +........ . .. ...... ..+..... ...+.|+..+.+++..... .+.
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 00 000000000 0 00 000000 00000111 1246799999999988642 578
Q ss_pred EEEEEeccHHHHHHHHHHHHhCC----ceEEEEEC--------CCCHHHHHHHHHHhcC-CCCceEEEEeccccccccCc
Q 005980 488 KFLIFAHHQPMLDAIHQLFLKKK----VHCIRIDG--------GTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTL 554 (666)
Q Consensus 488 KvlVF~~~~~~~~~l~~~L~~~g----~~~~~i~G--------~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~GlnL 554 (666)
++|||+++..+++.|.+.|...| +++..++| +++..+|.+++++|++ |. ..+|++|+++++|||+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~--~~vLVaT~v~~~GiDi 477 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD--HNILIATSVADEGIDI 477 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------C--CSCSEEEESSCCC---
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC--ccEEEEechhhcCCcC
Confidence 99999999999999999999988 88888855 9999999999999998 66 4468999999999999
Q ss_pred ccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHH
Q 005980 555 TAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDI 602 (666)
Q Consensus 555 ~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~ 602 (666)
+++++||+||+|||+..+.||+|| +|. ++..+|.|+..+++++.
T Consensus 478 p~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 478 AQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred ccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999 885 55678889998887664
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-33 Score=295.90 Aligned_cols=321 Identities=18% Similarity=0.192 Sum_probs=222.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C--CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R--DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~--~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.|+|||.+++..++..+.++++..+||+|||++++..+... . ...++||+||+ .|..||.+++.++++.....+..
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 68999999999999865688999999999999987665543 2 35679999999 78999999999998644333332
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPIIK 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~ 325 (666)
.. ++...... ........++|+||+.+...... +...++++||+||||++.+.+. .....+.....
T Consensus 108 ~~---~~~~~~~~--------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 108 IY---GGKAIYPQ--------IKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp EC---TTSCHHHH--------HHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred EE---CCcchHHH--------HhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 22 11111000 00001345889999999866543 2234789999999999876553 23333333333
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ 405 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~ 405 (666)
...+++++||||-. ++...+... +....++. ..
T Consensus 177 ~~~~~i~~SAT~~~----~~~~~~~~~------------------------------------~~~~~~~~-------~~ 209 (367)
T 1hv8_A 177 KDKRILLFSATMPR----EILNLAKKY------------------------------------MGDYSFIK-------AK 209 (367)
T ss_dssp SSCEEEEECSSCCH----HHHHHHHHH------------------------------------CCSEEEEE-------CC
T ss_pred CCceEEEEeeccCH----HHHHHHHHH------------------------------------cCCCeEEE-------ec
Confidence 56788999999932 111111110 00000000 00
Q ss_pred CCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHc
Q 005980 406 LPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEA 485 (666)
Q Consensus 406 lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~ 485 (666)
.+.... ..++... ...|+..+.+++. ..
T Consensus 210 ~~~~~~-~~~~~~~------------------------------------------------~~~~~~~l~~~l~---~~ 237 (367)
T 1hv8_A 210 INANIE-QSYVEVN------------------------------------------------ENERFEALCRLLK---NK 237 (367)
T ss_dssp SSSSSE-EEEEECC------------------------------------------------GGGHHHHHHHHHC---ST
T ss_pred CCCCce-EEEEEeC------------------------------------------------hHHHHHHHHHHHh---cC
Confidence 000111 1111111 1224445555554 46
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecC
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL 565 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~ 565 (666)
+.++||||+....++.+.+.|...|+.+..++|+++..+|.++++.|+++. ..+|++|+++++|+|++++++||++++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECChhhcCCCcccCCEEEEecC
Confidence 789999999999999999999999999999999999999999999999887 567889999999999999999999999
Q ss_pred CCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 566 SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 566 ~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
+|++..+.|++||++|.|+...+. .++.+. |...+..+.+
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~--~~~~~~~i~~ 355 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAI--SIINRR--EYKKLRYIER 355 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEE--EEECTT--SHHHHHHHHH
T ss_pred CCCHHHhhhcccccccCCCccEEE--EEEcHH--HHHHHHHHHH
Confidence 999999999999999999876554 445554 3334444443
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.7e-32 Score=294.89 Aligned_cols=325 Identities=17% Similarity=0.197 Sum_probs=220.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++.+++. +.++++..+||+|||++++..+... . ...++|||||+ .|..||.+++.++++.....+.
T Consensus 43 ~~~~~Q~~~i~~i~~-~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT-GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHH-TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhc-CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 599999999999987 5679999999999999877655533 2 34579999999 8899999999998753322332
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhHH-HHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQAK-RTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~ 324 (666)
... ++...... .........++|+|++.+...... ....++++||+||||++.+.... ....+...+
T Consensus 122 ~~~---g~~~~~~~-------~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 122 VTT---GGTNLRDD-------ILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp EEC---SSSCHHHH-------HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred EEe---CCcchHHH-------HHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 221 11111000 000112456899999998765432 22346899999999998775432 233344333
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.+++|||+- .++...+... +..+..+ .+..
T Consensus 192 ~~~~~~i~lSAT~~----~~~~~~~~~~------------------------------------~~~~~~~-----~~~~ 226 (400)
T 1s2m_A 192 PPTHQSLLFSATFP----LTVKEFMVKH------------------------------------LHKPYEI-----NLME 226 (400)
T ss_dssp CSSCEEEEEESCCC----HHHHHHHHHH------------------------------------CSSCEEE-----SCCS
T ss_pred CcCceEEEEEecCC----HHHHHHHHHH------------------------------------cCCCeEE-----Eecc
Confidence 35678899999972 1111111100 0000000 0000
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
..........+.... ...|+..+.+++.. .
T Consensus 227 ~~~~~~~~~~~~~~~------------------------------------------------~~~k~~~l~~~~~~--~ 256 (400)
T 1s2m_A 227 ELTLKGITQYYAFVE------------------------------------------------ERQKLHCLNTLFSK--L 256 (400)
T ss_dssp SCBCTTEEEEEEECC------------------------------------------------GGGHHHHHHHHHHH--S
T ss_pred ccccCCceeEEEEec------------------------------------------------hhhHHHHHHHHHhh--c
Confidence 111111111111111 12344555555554 3
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.++||||+....++.+.+.|...|+.+..++|+++..+|..+++.|+++. ..+|++|+++++|+|++++++||+++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESSCSSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCccccCCCccCCCEEEEeC
Confidence 6789999999999999999999999999999999999999999999999887 55788999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
++|++..+.||+||++|.|+... ++.|+.++ |...+..+.+
T Consensus 335 ~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~--~~~~~~~i~~ 375 (400)
T 1s2m_A 335 FPKTAETYLHRIGRSGRFGHLGL--AINLINWN--DRFNLYKIEQ 375 (400)
T ss_dssp CCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG--GHHHHHHHHH
T ss_pred CCCCHHHHHHhcchhcCCCCCce--EEEEeccc--hHHHHHHHHH
Confidence 99999999999999999997654 45566665 3334444433
No 18
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.2e-33 Score=315.61 Aligned_cols=346 Identities=14% Similarity=0.157 Sum_probs=203.4
Q ss_pred hhcCchHHHHHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcC----------CCCcEEEEeCC-cchHHHH-HH
Q 005980 171 ESKLLPFQRDGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFR----------DVWPVLILTPS-SLRLHWA-AM 234 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~----------~~~~~LIv~P~-sl~~qW~-~e 234 (666)
...|+|||.+++.+++. .+++++++++||+|||++++.++..+. ...++|||||+ +|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 45899999999999875 345689999999999999998877552 45789999997 8999999 77
Q ss_pred HHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH------HHhcCCccEEEEcCccc
Q 005980 235 IQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN------ILMSSNFKIVIADESHF 308 (666)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~------~l~~~~~~~vIiDEaH~ 308 (666)
+..|.. .+..+. ......+..|+|+||+.+..... .+....|++||+||||+
T Consensus 256 ~~~~~~----~~~~~~------------------~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~ 313 (590)
T 3h1t_A 256 FTPFGD----ARHKIE------------------GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR 313 (590)
T ss_dssp CTTTCS----SEEECC------------------C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-
T ss_pred HHhcch----hhhhhh------------------ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc
Confidence 776532 111110 11112345689999999876532 23344689999999999
Q ss_pred cCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHH
Q 005980 309 LKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNL 388 (666)
Q Consensus 309 ~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~l 388 (666)
+.+.....++.+...+ ...++++|||||..+...+++.++ .+..+. . .+...
T Consensus 314 ~~~~~~~~~~~il~~~-~~~~~l~lTATP~~~~~~~~~~~f---~~~~~~--------------------~----~~~~~ 365 (590)
T 3h1t_A 314 GSARDNSNWREILEYF-EPAFQIGMTATPLREDNRDTYRYF---GNPIYT--------------------Y----SLRQG 365 (590)
T ss_dssp --------CHHHHHHS-TTSEEEEEESSCSCTTTHHHHHHS---CSCSEE--------------------E----CHHHH
T ss_pred ccccchHHHHHHHHhC-CcceEEEeccccccccchhHHHHc---CCceEe--------------------c----CHHHH
Confidence 9875434444444433 457899999999987766554432 111000 0 01111
Q ss_pred hhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCc
Q 005980 389 MKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSA 468 (666)
Q Consensus 389 l~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (666)
+.. ..+++.....+....+................ .+....+.... +...+ ..
T Consensus 366 i~~------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~--~~ 418 (590)
T 3h1t_A 366 IDD------------GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR------------EIPDGEYQTKD-FERVI--AL 418 (590)
T ss_dssp HHH------------TSSCCEEEEEEEETTCC-----------------------------------CCS-HHHHH--HH
T ss_pred hhC------------CccCCcEEEEeeeeeecccccccccccccccc------------ccccccCCHHH-hhhHh--cC
Confidence 110 12333333344443332111110000000000 00000000000 00000 01
Q ss_pred cccHHHHHHHHHHHH---HcCCEEEEEeccHHHHHHHHHHHHhCCce--------EEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 469 EAKIPAVLDYLETVI---EAGCKFLIFAHHQPMLDAIHQLFLKKKVH--------CIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 469 ~~Kl~~l~~~l~~~~---~~g~KvlVF~~~~~~~~~l~~~L~~~g~~--------~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
..+...+.+.+..++ ..+.|+||||++..+++.+.+.|...+.. +..++|.++ ++|++++++|++++.
T Consensus 419 ~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~ 497 (590)
T 3h1t_A 419 KARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELET 497 (590)
T ss_dssp HHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCC
Confidence 124444444444333 34689999999999999999999876442 778999986 369999999998764
Q ss_pred -ceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCC---CCcEEEEEEE
Q 005980 538 -VKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ---VSSVNVYYLL 594 (666)
Q Consensus 538 -~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~v~~lv 594 (666)
..++|++++++++|+|++.+++||+++++|++..+.|++||++|.|+ +..+.|+.++
T Consensus 498 ~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 498 STPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp CCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred CCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 57799999999999999999999999999999999999999999995 4567888877
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.9e-32 Score=295.62 Aligned_cols=317 Identities=18% Similarity=0.247 Sum_probs=218.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++.+++. ++.+++..+||+|||++++..+... . ...++|||||+ .|..||.+++.++.......+.
T Consensus 59 ~~~~~Q~~ai~~i~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEE
Confidence 589999999999887 5689999999999999987665543 2 35689999999 7999999999998743322222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~ 324 (666)
... ++...... .........++|+||+.+...... +....+++||+||||++.+.+. .....+...+
T Consensus 138 ~~~---g~~~~~~~-------~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 138 ACI---GGTNVGED-------IRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp EEC---TTSCHHHH-------HHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred EEE---CCCCHHHH-------HHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 221 11111000 000011335889999998765542 3334689999999999877653 2333444444
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.+++||||-. ++.. +...|... +..+.- .. .
T Consensus 208 ~~~~~~i~~SAT~~~----~~~~---------------~~~~~~~~---------------------~~~~~~-~~---~ 243 (410)
T 2j0s_A 208 PPATQVVLISATLPH----EILE---------------MTNKFMTD---------------------PIRILV-KR---D 243 (410)
T ss_dssp CTTCEEEEEESCCCH----HHHT---------------TGGGTCSS---------------------CEEECC-CG---G
T ss_pred ccCceEEEEEcCCCH----HHHH---------------HHHHHcCC---------------------CEEEEe-cC---c
Confidence 456789999999831 1111 11111100 000000 00 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
..+.......+..... ...|...+.+++...
T Consensus 244 ~~~~~~~~~~~~~~~~-----------------------------------------------~~~k~~~l~~~~~~~-- 274 (410)
T 2j0s_A 244 ELTLEGIKQFFVAVER-----------------------------------------------EEWKFDTLCDLYDTL-- 274 (410)
T ss_dssp GCSCTTEEEEEEEESS-----------------------------------------------TTHHHHHHHHHHHHH--
T ss_pred cccCCCceEEEEEeCc-----------------------------------------------HHhHHHHHHHHHHhc--
Confidence 1111111111111111 112455566666553
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.++||||+....++.+.+.|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|+|++.+++||+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTDVWARGLDVPQVSLIINYD 352 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECChhhCcCCcccCCEEEEEC
Confidence 5679999999999999999999999999999999999999999999999887 55788999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++|++..+.||+||++|.|+... ++.++.+.
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 353 LPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 99999999999999999997654 45556654
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.9e-32 Score=288.01 Aligned_cols=310 Identities=15% Similarity=0.192 Sum_probs=213.5
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhc-C---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCc
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCF-R---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~-~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~ 245 (666)
..|+|||.+++..++.. +.++|+..+||+|||++++..+... . ...++|||||+ .|..||.+++.++.......
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 105 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCee
Confidence 36899999999999874 2688999999999999887655433 2 35679999999 79999999999987543333
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCCh-h-HHHHHHhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNA-Q-AKRTAATL 321 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~-~-s~~~~~~~ 321 (666)
+..... +... ........|+|+|++.+...... +...++++||+||||++.+. . ......+.
T Consensus 106 ~~~~~~--~~~~------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 171 (395)
T 3pey_A 106 SQLIVP--DSFE------------KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171 (395)
T ss_dssp EEEEST--TSSC------------TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHH
T ss_pred EEEEec--Cchh------------hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHH
Confidence 322211 1111 11112456899999999765532 22347899999999998652 1 23333444
Q ss_pred hhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhh
Q 005980 322 PIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKD 401 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~ 401 (666)
.......+.+++||||- ..+......+.+. ...+.-..
T Consensus 172 ~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~~------------------------------------~~~~~~~~-- 209 (395)
T 3pey_A 172 RFLPKDTQLVLFSATFA----DAVRQYAKKIVPN------------------------------------ANTLELQT-- 209 (395)
T ss_dssp HTSCTTCEEEEEESCCC----HHHHHHHHHHSCS------------------------------------CEEECCCG--
T ss_pred HhCCCCcEEEEEEecCC----HHHHHHHHHhCCC------------------------------------CeEEEccc--
Confidence 44445678899999983 1121111111110 00000000
Q ss_pred hhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHH
Q 005980 402 VLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLET 481 (666)
Q Consensus 402 v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~ 481 (666)
...+.......+....... .|...+.+++..
T Consensus 210 --~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~l~~~~~~ 240 (395)
T 3pey_A 210 --NEVNVDAIKQLYMDCKNEA-----------------------------------------------DKFDVLTELYGL 240 (395)
T ss_dssp --GGCSCTTEEEEEEECSSHH-----------------------------------------------HHHHHHHHHHTT
T ss_pred --cccccccccEEEEEcCchH-----------------------------------------------HHHHHHHHHHHh
Confidence 0111122222222222111 122233333333
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
..+.++|||++...+++.+...|...|+.+..++|+++..+|.++++.|+++. ..+|++|+++++|+|++++++||
T Consensus 241 --~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 241 --MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp --TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECGGGSSSCCCTTEEEEE
T ss_pred --ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECChhhcCCCcccCCEEE
Confidence 25689999999999999999999999999999999999999999999999987 55789999999999999999999
Q ss_pred EecCCC------CcchhhhhhhhhhccCCCCcEEE
Q 005980 562 FAELSW------TPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 562 ~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
++++|| ++..+.|++||++|.|+...+.+
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 999999 99999999999999997654433
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-32 Score=288.56 Aligned_cols=316 Identities=18% Similarity=0.222 Sum_probs=212.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.|+|||.+++.++++ ++++++..+||+|||++++..+... ..++|||||+ .|..||.+++.++.......+....
T Consensus 16 ~l~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~- 91 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ-GKNVVVRAKTGSGKTAAYAIPILEL--GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY- 91 (337)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHH--TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC-
T ss_pred CCCHHHHHHHHHHhc-CCCEEEEcCCCCcHHHHHHHHHHhh--cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE-
Confidence 589999999999886 6689999999999999888776653 5789999999 8999999999998743333333222
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhhhhcc
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPIIKKAQ 328 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~~~~ 328 (666)
++...... ........++|+||+.+...... +...+|++||+||||++.+.+. .....+........
T Consensus 92 --~~~~~~~~--------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 92 --GGMPYKAQ--------INRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp --TTSCHHHH--------HHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred --CCcchHHH--------HhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 11111000 00011356899999999876432 2234689999999999865442 22333333333456
Q ss_pred eEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCc
Q 005980 329 YALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPV 408 (666)
Q Consensus 329 ~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~ 408 (666)
..+++||||- .++...+.....+ ...+... ...+.
T Consensus 162 ~~~~~SAT~~----~~~~~~~~~~~~~------------------------------------~~~~~~~-----~~~~~ 196 (337)
T 2z0m_A 162 ITGLFSATIP----EEIRKVVKDFITN------------------------------------YEEIEAC-----IGLAN 196 (337)
T ss_dssp EEEEEESCCC----HHHHHHHHHHSCS------------------------------------CEEEECS-----GGGGG
T ss_pred EEEEEeCcCC----HHHHHHHHHhcCC------------------------------------ceeeecc-----cccCC
Confidence 6788999993 2222111111000 0000000 00011
Q ss_pred ccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCE
Q 005980 409 KRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCK 488 (666)
Q Consensus 409 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~K 488 (666)
....++...... ....+.+.. ..+.+
T Consensus 197 --~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~--~~~~~ 222 (337)
T 2z0m_A 197 --VEHKFVHVKDDW--------------------------------------------------RSKVQALRE--NKDKG 222 (337)
T ss_dssp --EEEEEEECSSSS--------------------------------------------------HHHHHHHHT--CCCSS
T ss_pred --ceEEEEEeChHH--------------------------------------------------HHHHHHHHh--CCCCc
Confidence 111111111110 011122222 36789
Q ss_pred EEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCC
Q 005980 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWT 568 (666)
Q Consensus 489 vlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wn 568 (666)
+|||++....++.+.+.|. .+..++|+++..+|.+++++|+++. ..+|++|+++++|+|++++++||+++++|+
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGE--YDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCC--CcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 9999999999999988886 5788999999999999999999987 567889999999999999999999999999
Q ss_pred cchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 005980 569 PGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVR 608 (666)
Q Consensus 569 p~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~ 608 (666)
+..+.|++||++|.|+...+.+|.. .+....+.+.+.++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999888777766 55555555555443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.98 E-value=4.6e-32 Score=292.80 Aligned_cols=318 Identities=15% Similarity=0.201 Sum_probs=204.3
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+.. +. ...++||++|+ .|..||.+++.++.......+.
T Consensus 62 ~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK-GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEE
T ss_pred CCCHHHHHHhHHHhC-CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEE
Confidence 589999999999887 667999999999999997655543 32 35679999999 7999999999998753332222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~ 324 (666)
.. .++...... ..........++|+|++.+...... +....+++||+||||++.+.+. .....+...+
T Consensus 141 ~~---~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 211 (414)
T 3eiq_A 141 AC---IGGTNVRAE------VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 211 (414)
T ss_dssp EC---CCCTTHHHH------HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTS
T ss_pred EE---ECCcchHHH------HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhC
Confidence 22 111111000 0000012346899999998766543 3334689999999999865432 2333344434
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.++|||||- .++...+. .+... +..+...... .
T Consensus 212 ~~~~~~i~~SAT~~----~~~~~~~~---------------~~~~~---------------------~~~~~~~~~~--~ 249 (414)
T 3eiq_A 212 NSNTQVVLLSATMP----SDVLEVTK---------------KFMRD---------------------PIRILVKKEE--L 249 (414)
T ss_dssp CTTCEEEEECSCCC----HHHHHHHT---------------TTCSS---------------------CEEECCCCCC--C
T ss_pred CCCCeEEEEEEecC----HHHHHHHH---------------HHcCC---------------------CEEEEecCCc--c
Confidence 45678899999982 12211111 11000 0000000000 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
..+......+.+. ....|+..+.+++.. .
T Consensus 250 ~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~l~~~~~~--~ 278 (414)
T 3eiq_A 250 TLEGIRQFYINVE-------------------------------------------------REEWKLDTLCDLYET--L 278 (414)
T ss_dssp CTTSCCEEEEECS-------------------------------------------------SSTTHHHHHHHHHHS--S
T ss_pred CCCCceEEEEEeC-------------------------------------------------hHHhHHHHHHHHHHh--C
Confidence 0011111111111 122355566666655 2
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|+|++++++||+++
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSCEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECCccccCCCccCCCEEEEeC
Confidence 5679999999999999999999999999999999999999999999999887 56799999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++|++..+.||+||++|.|+...+ |.++.++
T Consensus 357 ~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 387 (414)
T 3eiq_A 357 LPTNRENYIHRIGRGGRFGRKGVA--INMVTEE 387 (414)
T ss_dssp CCSSTHHHHHHSCCC-------CE--EEEECST
T ss_pred CCCCHHHhhhhcCcccCCCCCceE--EEEEcHH
Confidence 999999999999999999976544 5556655
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=2.7e-30 Score=278.65 Aligned_cols=329 Identities=16% Similarity=0.236 Sum_probs=221.6
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHH-hcC---CCCcEEEEeCC-cchHHHHHHHHHHhcC-CCC
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVAT-CFR---DVWPVLILTPS-SLRLHWAAMIQQWLNI-PPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~-~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~-~~~ 244 (666)
..|+|+|.+++..++.. +..+|+..+||+|||++++..+. .+. ...++||++|+ .|..||.+.+.++... +..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 36899999999999874 46899999999999999755443 333 23379999999 7899999999998653 222
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCC--hhHHHHHH
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKN--AQAKRTAA 319 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn--~~s~~~~~ 319 (666)
.+..... +.... ........|+|+|++.+...... +...++++||+||||++.. ........
T Consensus 126 ~~~~~~~---~~~~~----------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 192 (412)
T 3fht_A 126 KLAYAVR---GNKLE----------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 192 (412)
T ss_dssp CEEEECT---TCCCC----------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHH
T ss_pred eEEEeec---Ccchh----------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHH
Confidence 2222211 11110 11122346899999999776532 2224689999999998854 22334444
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k 399 (666)
+...+....+.+++||||- .+++.......+. +..+. ..
T Consensus 193 ~~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~~------------------------------------~~~~~-~~ 231 (412)
T 3fht_A 193 IQRMLPRNCQMLLFSATFE----DSVWKFAQKVVPD------------------------------------PNVIK-LK 231 (412)
T ss_dssp HHHTSCTTCEEEEEESCCC----HHHHHHHHHHSSS------------------------------------CEEEC-CC
T ss_pred HHhhCCCCceEEEEEeecC----HHHHHHHHHhcCC------------------------------------CeEEe-ec
Confidence 4444445678999999983 2222222211110 00000 00
Q ss_pred hhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 400 ~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
.. ...+.. ....++..... ..|...+.+++
T Consensus 232 ~~--~~~~~~-~~~~~~~~~~~-----------------------------------------------~~~~~~l~~~~ 261 (412)
T 3fht_A 232 RE--EETLDT-IKQYYVLCSSR-----------------------------------------------DEKFQALCNLY 261 (412)
T ss_dssp GG--GSSCTT-EEEEEEECSSH-----------------------------------------------HHHHHHHHHHH
T ss_pred cc--cccccC-ceEEEEEcCCh-----------------------------------------------HHHHHHHHHHH
Confidence 00 011111 11112211111 12444555555
Q ss_pred HHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCE
Q 005980 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~ 559 (666)
.. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++. ..+|++|+++++|+|++++++
T Consensus 262 ~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~~~~ 337 (412)
T 3fht_A 262 GA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTNVCARGIDVEQVSV 337 (412)
T ss_dssp HH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECGGGTSSCCCTTEEE
T ss_pred hh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcCccccCCCccCCCE
Confidence 55 36789999999999999999999999999999999999999999999999987 567899999999999999999
Q ss_pred EEEecCCCCc------chhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 005980 560 VIFAELSWTP------GDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 611 (666)
Q Consensus 560 VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~ 611 (666)
||++++||++ ..+.||+||++|.|+...+ +.++.. .-|..++..++++.
T Consensus 338 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 338 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEHF 392 (412)
T ss_dssp EEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHHH
Confidence 9999999876 5999999999999965543 334433 33455666555543
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=1.2e-30 Score=283.04 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=212.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hc-C-------CCCcEEEEeCC-cchHHHHHHHHHHhcCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CF-R-------DVWPVLILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~-~-------~~~~~LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
.++|+|.+++..++. |..+++..+||+|||+.++..+. .+ . ....+||+||+ .|..||.+++.++....
T Consensus 78 ~pt~iQ~~ai~~i~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 156 (434)
T 2db3_A 78 IPTPIQKCSIPVISS-GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFES 156 (434)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHhc-CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccC
Confidence 589999999999886 67899999999999998765433 22 1 13479999999 89999999999997533
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAA 319 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~ 319 (666)
...+..+. ++...... ......+..|+|+|++.+...... +...++++||+||||++.+.+. .....
T Consensus 157 ~~~~~~~~---gg~~~~~~-------~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~ 226 (434)
T 2db3_A 157 YLKIGIVY---GGTSFRHQ-------NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRR 226 (434)
T ss_dssp SCCCCEEC---TTSCHHHH-------HHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred CcEEEEEE---CCCCHHHH-------HHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHH
Confidence 22222222 22111000 001112456899999999776542 2234688999999999877542 22222
Q ss_pred hhhhh--hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 320 TLPII--KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 320 ~~~l~--~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
+...+ ....+.+++|||+- .++..+.. .|.. ....+.-
T Consensus 227 i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~---------------~~l~---------------------~~~~i~~ 266 (434)
T 2db3_A 227 IMTHVTMRPEHQTLMFSATFP----EEIQRMAG---------------EFLK---------------------NYVFVAI 266 (434)
T ss_dssp HHHCTTSCSSCEEEEEESCCC----HHHHHHHH---------------TTCS---------------------SCEEEEE
T ss_pred HHHhcCCCCCceEEEEeccCC----HHHHHHHH---------------Hhcc---------------------CCEEEEe
Confidence 32221 24568899999982 22222111 1100 0000000
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
... ...... ....+.... ...|...+.+
T Consensus 267 --~~~-~~~~~~-i~~~~~~~~------------------------------------------------~~~k~~~l~~ 294 (434)
T 2db3_A 267 --GIV-GGACSD-VKQTIYEVN------------------------------------------------KYAKRSKLIE 294 (434)
T ss_dssp --SST-TCCCTT-EEEEEEECC------------------------------------------------GGGHHHHHHH
T ss_pred --ccc-cccccc-cceEEEEeC------------------------------------------------cHHHHHHHHH
Confidence 000 000111 111111111 1235555666
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
++.. .+.++||||+....++.+.+.|...|+++..+||+++..+|.+++++|+++. ..+|++|+++++|||++++
T Consensus 295 ~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 295 ILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECGGGTSSCCCTTC
T ss_pred HHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEchhhhCCCCcccC
Confidence 6655 3455999999999999999999999999999999999999999999999987 5578999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEe
Q 005980 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLA 595 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~ 595 (666)
++||++|+|+++..|.||+||++|.|+...+. .|+.
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~--~~~~ 405 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRAT--SFFD 405 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEE--EEEC
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEE--EEEe
Confidence 99999999999999999999999999865544 4455
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=2.6e-32 Score=292.58 Aligned_cols=315 Identities=16% Similarity=0.225 Sum_probs=106.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++.+++. ++.+++..+||+|||++++..+. .+. ...++|||||+ .|..||.+++.+++......+.
T Consensus 43 ~~~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHH-TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 689999999999887 56899999999999998654443 332 35589999999 8999999999998753322332
Q ss_pred EEEecCCCCCc-cceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhh
Q 005980 248 VVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPI 323 (666)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l 323 (666)
... ++... .... ......++|+||+.+...... +...++++||+||||++.+.+. .....+...
T Consensus 122 ~~~---g~~~~~~~~~---------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 122 ACI---GGTSFVEDAE---------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp EEC---SSCCHHHHHH---------HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred EEe---CCCchHHHHh---------hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 221 11111 0000 001345889999998765542 2234789999999999854432 233344444
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
+....+++++||||-. ++...+... +..+.
T Consensus 190 ~~~~~~~i~~SAT~~~----~~~~~~~~~------------------------------------~~~~~---------- 219 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPN----DVLEVTTKF------------------------------------MRNPV---------- 219 (394)
T ss_dssp SCTTCEEEEECSSCCH----HHHHHHHHH------------------------------------CCSCE----------
T ss_pred CCCCceEEEEEEecCH----HHHHHHHHh------------------------------------cCCCe----------
Confidence 4456789999999831 111111100 00000
Q ss_pred hcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHH
Q 005980 404 AQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVI 483 (666)
Q Consensus 404 ~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~ 483 (666)
.+.+.............+. .......|...+.+++...
T Consensus 220 ---------~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~- 257 (394)
T 1fuu_A 220 ---------RILVKKDELTLEGIKQFYV--------------------------------NVEEEEYKYECLTDLYDSI- 257 (394)
T ss_dssp ---------EEEECC-----------------------------------------------------------------
T ss_pred ---------EEEecCccccCCCceEEEE--------------------------------EcCchhhHHHHHHHHHhcC-
Confidence 0000000000000000000 0001112444555555542
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEe
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFA 563 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~ 563 (666)
.+.++||||+....++.+.+.|...|+.+..++|+++..+|.++++.|+++. ..+|++|+++++|+|++++++||++
T Consensus 258 -~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 258 -SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC--CcEEEECChhhcCCCcccCCEEEEe
Confidence 5679999999999999999999999999999999999999999999999887 5678999999999999999999999
Q ss_pred cCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 564 ELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 564 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
+++|++..+.|++||++|.|+...+.+ ++.++
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ----------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 999999999999999999997765544 44443
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=279.24 Aligned_cols=318 Identities=14% Similarity=0.209 Sum_probs=209.5
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC---------------------CCCcEEEEeCC-cch
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR---------------------DVWPVLILTPS-SLR 228 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~---------------------~~~~~LIv~P~-sl~ 228 (666)
..|+|+|.+++..++. +..+|+..+||+|||++++..+. .+. ....+||++|+ .|.
T Consensus 36 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 114 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELA 114 (417)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHH
Confidence 3689999999998776 67899999999999997654332 221 11459999999 899
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCc
Q 005980 229 LHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADES 306 (666)
Q Consensus 229 ~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEa 306 (666)
.||.+++.++.......+..+. ++...... ......+..|+|+|++.+...... +...++++||+|||
T Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~---g~~~~~~~-------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 115 VQIYEEARKFSYRSRVRPCVVY---GGADIGQQ-------IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEC---SSSCHHHH-------HHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHhCcCCceEEEEE---CCCCHHHH-------HHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEECh
Confidence 9999999998753333333322 11111000 001112356899999999876543 22346889999999
Q ss_pred cccCChhH-HHHHHhhhh--hh--hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCC
Q 005980 307 HFLKNAQA-KRTAATLPI--IK--KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASN 381 (666)
Q Consensus 307 H~~kn~~s-~~~~~~~~l--~~--~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~ 381 (666)
|++.+.+. .....+... .. ...+.+++||||- .++..++....
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~---------------------------- 232 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP----KEIQMLARDFL---------------------------- 232 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC----HHHHHHHHHHC----------------------------
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC----HHHHHHHHHHc----------------------------
Confidence 99865431 222222221 00 1457899999982 22211111110
Q ss_pred HHHHHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHH
Q 005980 382 HEELHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLIN 461 (666)
Q Consensus 382 ~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (666)
..+..+. ... . ...++...+. ++...
T Consensus 233 --------~~~~~~~-~~~-~-~~~~~~i~~~-~~~~~------------------------------------------ 258 (417)
T 2i4i_A 233 --------DEYIFLA-VGR-V-GSTSENITQK-VVWVE------------------------------------------ 258 (417)
T ss_dssp --------SSCEEEE-EC------CCSSEEEE-EEECC------------------------------------------
T ss_pred --------CCCEEEE-eCC-C-CCCccCceEE-EEEec------------------------------------------
Confidence 0000000 000 0 0111111111 11111
Q ss_pred hhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEE
Q 005980 462 KIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541 (666)
Q Consensus 462 ~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 541 (666)
...|...+.+++... ..+.++|||++....++.+.+.|...|+.+..+||+++..+|.++++.|+++. ..+
T Consensus 259 ------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~v 329 (417)
T 2i4i_A 259 ------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPI 329 (417)
T ss_dssp ------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCE
T ss_pred ------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCE
Confidence 112444555555542 35789999999999999999999999999999999999999999999999887 558
Q ss_pred EEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 542 VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 542 L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
|++|+++++|+|++++++||+++++|++..+.||+||++|.|+... ++.|+.+.
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 383 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEE--EEEEECGG
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCce--EEEEEccc
Confidence 8999999999999999999999999999999999999999997644 44455543
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=2.5e-28 Score=263.68 Aligned_cols=322 Identities=17% Similarity=0.147 Sum_probs=216.5
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.+|+|+|.+++..++. +..+++..+||+|||+.++..+... .....+||++|+ .|..||.+++.++.+ ....+..+
T Consensus 20 ~~~~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~ 97 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGF 97 (414)
T ss_dssp SCCCHHHHHHHHHHTT-TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEEC
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEE
Confidence 4689999999999887 5689999999999999766554433 456789999999 899999999999865 22222222
Q ss_pred EecCCCCCccc-eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh-------------HH
Q 005980 250 LSQLGGSNRSG-FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ-------------AK 315 (666)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~-------------s~ 315 (666)
. ++..... ....... ......|+|+|++.+......+...++++||+||||++...+ ..
T Consensus 98 ~---g~~~~~~~~~~~~~l----~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 98 Y---SSMKKEEKEKFEKSF----EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp C---TTSCHHHHHHHHHHH----HHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred E---CCCChhhHHHHHHHh----hcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 1 1111100 0000000 001246899999999877666666789999999999874221 11
Q ss_pred HHHHhhhhhh-----------hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHH
Q 005980 316 RTAATLPIIK-----------KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEE 384 (666)
Q Consensus 316 ~~~~~~~l~~-----------~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 384 (666)
....+...+. ...+.+++||||......+.+.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~------------------------------------- 213 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF------------------------------------- 213 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH-------------------------------------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH-------------------------------------
Confidence 1333333333 5568899999975544321110
Q ss_pred HHHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhh
Q 005980 385 LHNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIY 464 (666)
Q Consensus 385 l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (666)
...+. +-+.+ ...+.......++..
T Consensus 214 -~~~~~--~~~~~------~~~~~~~i~~~~~~~---------------------------------------------- 238 (414)
T 3oiy_A 214 -RDLLN--FTVGR------LVSVARNITHVRISS---------------------------------------------- 238 (414)
T ss_dssp -HHHHS--CCSSC------CCCCCCSEEEEEESS----------------------------------------------
T ss_pred -HHhhc--cCcCc------cccccccchheeecc----------------------------------------------
Confidence 00000 00000 000111111112111
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEE-EEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCI-RIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~-~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
.|...+.+++.. .+.++||||+....++.+...|...|+++. .++|. +|. ++.|+++. ..+|+
T Consensus 239 -----~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~--~~vLv 302 (414)
T 3oiy_A 239 -----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK--INILI 302 (414)
T ss_dssp -----CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS--CSEEE
T ss_pred -----CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC--CeEEE
Confidence 244556666665 468999999999999999999999999998 88884 444 99999987 44566
Q ss_pred e----ccccccccCccc-CCEEEEecCC--CCcchhhhhhhhhhccCCC--CcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 005980 544 S----MKAGGVGLTLTA-ASTVIFAELS--WTPGDLIQAEDRAHRIGQV--SSVNVYYLLANDTVDDIVWDVVRSKLENL 614 (666)
Q Consensus 544 s----t~a~~~GlnL~~-a~~VI~~d~~--wnp~~~~Qa~gR~~R~Gq~--~~V~v~~lv~~~tiee~i~~~~~~K~~~~ 614 (666)
+ |+++++|+|+++ +++||++++| +++..|.|++||++|.|+. +.-.++.++ -|...+..+.+....+
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHHHHHHhccc
Confidence 6 999999999999 9999999999 9999999999999999975 455566666 3556667666666543
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.96 E-value=6.1e-29 Score=274.94 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=211.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.++|+|.+++..++. |..+++..+||+|||+.++..+... .+.+|||+|. +|+.||.+++.++ +++ +..+.+
T Consensus 25 ~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~-gi~---~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSLCYQIPALLL--NGLTVVVSPLISLMKDQVDQLQAN-GVA---AACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHS--SSEEEEECSCHHHHHHHHHHHHHT-TCC---EEEECT
T ss_pred CCCHHHHHHHHHHHc-CCCEEEECCCCcHHHHHHHHHHHHh--CCCEEEECChHHHHHHHHHHHHHc-CCc---EEEEeC
Confidence 689999999999887 5688999999999999776554433 4789999999 8999999999886 322 222211
Q ss_pred cCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHH--HHHHHhcCCccEEEEcCccccCChhH---HHHHHhhhhhh-
Q 005980 252 QLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLK--LQNILMSSNFKIVIADESHFLKNAQA---KRTAATLPIIK- 325 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~--~~~~l~~~~~~~vIiDEaH~~kn~~s---~~~~~~~~l~~- 325 (666)
+............. ......++++|++.+.. ..+.+...++++||+||||.+..++. ..+..+..+..
T Consensus 98 --~~~~~~~~~~~~~~----~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 98 --TQTREQQLEVMTGC----RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp --TSCHHHHHHHHHHH----HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred --CCCHHHHHHHHHHH----hcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 11100000000000 01124588999999852 23445557899999999999975431 22333333322
Q ss_pred -hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 326 -KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 326 -~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+++|||||......++...+.+-.|.. ... . .
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-------------------------------------~~~----~--~ 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLI-------------------------------------QIS----S--F 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE-------------------------------------EEC----C--C
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE-------------------------------------EeC----C--C
Confidence 2467899999995433333333322111100 000 0 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
.-|. .... ... ...++..+.+++.. .
T Consensus 209 ~r~~-l~~~-v~~--------------------------------------------------~~~~~~~l~~~l~~--~ 234 (523)
T 1oyw_A 209 DRPN-IRYM-LME--------------------------------------------------KFKPLDQLMRYVQE--Q 234 (523)
T ss_dssp CCTT-EEEE-EEE--------------------------------------------------CSSHHHHHHHHHHH--T
T ss_pred CCCc-eEEE-EEe--------------------------------------------------CCCHHHHHHHHHHh--c
Confidence 0011 0111 110 11244456666665 3
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.++||||.....++.+...|...|+.+..+||+++.++|..+.+.|.+++ ..+|++|.++++|||+++++.||+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD--LQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC--CeEEEEechhhCCCCccCccEEEEEC
Confidence 6789999999999999999999999999999999999999999999999987 56788999999999999999999999
Q ss_pred CCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 565 LSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
+|+++..+.|++||++|.|+...+.+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCCHHHHHHHhccccCCCCCceEEE
Confidence 99999999999999999998766544
No 29
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=1.9e-28 Score=275.74 Aligned_cols=337 Identities=15% Similarity=0.210 Sum_probs=212.6
Q ss_pred cCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHh-cCC-------CCcEEEEeCC-cchHHHHHHHHHHhc--
Q 005980 173 KLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATC-FRD-------VWPVLILTPS-SLRLHWAAMIQQWLN-- 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~-~~~-------~~~~LIv~P~-sl~~qW~~e~~~~~~-- 240 (666)
.|+|+|.+++..++.. +..+|+..+||+|||++++..+.. +.. ..++|||+|+ .|..||.+++.++++
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~ 122 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 122 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc
Confidence 6899999999998842 567899999999999986654432 211 2369999999 899999999999862
Q ss_pred --CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhH-
Q 005980 241 --IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQA- 314 (666)
Q Consensus 241 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s- 314 (666)
++...+.... ++....... .........|+|+|++.+...... ..-..+++||+||||++...+.
T Consensus 123 ~~~~~~~~~~~~---gg~~~~~~~------~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~ 193 (579)
T 3sqw_A 123 YGLKKYACVSLV---GGTDFRAAM------NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFR 193 (579)
T ss_dssp GGGTTSCEEEEC---TTSCHHHHH------HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred ccccceEEEEEE---CCccHHHHH------HHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCH
Confidence 2333332222 221110000 000001345899999999765443 2335689999999999976542
Q ss_pred HHHHHhhhhhhh-------cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHH
Q 005980 315 KRTAATLPIIKK-------AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387 (666)
Q Consensus 315 ~~~~~~~~l~~~-------~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 387 (666)
.....+...+.. ..+++++|||+-. ...+ +...+.....
T Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~------------------~~~~~l~~~~--------------- 239 (579)
T 3sqw_A 194 DDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK------------------LANNIMNKKE--------------- 239 (579)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH------------------HTTTTCCSSE---------------
T ss_pred HHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHH------------------HHHHHcCCCc---------------
Confidence 223333333222 4478999999831 1111 1111100000
Q ss_pred HhhhhhhhhehhhhhhhcCCcccEEEE-EecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcC
Q 005980 388 LMKATVMIRRLKKDVLAQLPVKRRQQV-FLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTD 466 (666)
Q Consensus 388 ll~~~~~lrr~k~~v~~~lp~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (666)
.+.+...... .........+.+ ......... .
T Consensus 240 ----~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~---~--------------------------------------- 272 (579)
T 3sqw_A 240 ----CLFLDTVDKN-EPEAHERIDQSVVISEKFANSI---F--------------------------------------- 272 (579)
T ss_dssp ----EEEEESSCSS-SCSSCTTEEEEEEEESSTTHHH---H---------------------------------------
T ss_pred ----eEEEeecCcc-ccccccccceEEEEecchhhhH---H---------------------------------------
Confidence 0000000000 000111111111 111111000 0
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC---CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
..+..+.+.+... ..+.++||||.....++.+...|... |+.+..+||+++..+|..+++.|+++. ..+|+
T Consensus 273 ---~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLV 346 (579)
T 3sqw_A 273 ---AAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILV 346 (579)
T ss_dssp ---HHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEE
T ss_pred ---HHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEE
Confidence 0111122222211 35789999999999999999999886 899999999999999999999999987 66889
Q ss_pred eccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 544 SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 544 st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
+|+++++|||++++++||++++|+++..+.|++||++|.|+...+ +.++.+. |...+..+.+
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--ELPFVRELED 408 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EEEEccc--HHHHHHHHHH
Confidence 999999999999999999999999999999999999999976544 4445543 4445555544
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.2e-29 Score=278.44 Aligned_cols=310 Identities=14% Similarity=0.176 Sum_probs=189.0
Q ss_pred cCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHH-hcCC---CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcE
Q 005980 173 KLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVAT-CFRD---VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~-~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i 246 (666)
.|+|+|.+++..+++. +.++|+..+||+|||++++..+. .+.. ..++||+||+ .|+.||.+++.++++.....+
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 220 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeE
Confidence 6899999999998875 47899999999999998765444 3322 3479999999 799999999999975332222
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCCh--hHHHHHHhhh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNA--QAKRTAATLP 322 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~ 322 (666)
.... ++... ........|+|+|++.+...... +...++++||+||||++... .......+..
T Consensus 221 ~~~~---~~~~~-----------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~ 286 (508)
T 3fho_A 221 AFGI---KDSVP-----------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKH 286 (508)
T ss_dssp EC------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHH
T ss_pred EEEe---CCccc-----------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHH
Confidence 2111 11111 11112456999999998765432 22346899999999998652 2234444444
Q ss_pred hhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhh
Q 005980 323 IIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDV 402 (666)
Q Consensus 323 l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v 402 (666)
......+.++|||||-. ...++ ...+.+. ...+.-.....
T Consensus 287 ~~~~~~~~i~lSAT~~~-~~~~~---~~~~~~~------------------------------------~~~i~~~~~~~ 326 (508)
T 3fho_A 287 LLPRNTQIVLFSATFSE-RVEKY---AERFAPN------------------------------------ANEIRLKTEEL 326 (508)
T ss_dssp HSCTTCEEEEEESCCST-HHHHH---HHHHSTT------------------------------------CEEECCCCCC-
T ss_pred hCCcCCeEEEEeCCCCH-HHHHH---HHHhcCC------------------------------------CeEEEeccccC
Confidence 44456778999999831 11111 1111100 00000000000
Q ss_pred hhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHH
Q 005980 403 LAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETV 482 (666)
Q Consensus 403 ~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~ 482 (666)
..+......+.+.. ...|...+.+++..
T Consensus 327 --~~~~~~~~~~~~~~-------------------------------------------------~~~k~~~l~~ll~~- 354 (508)
T 3fho_A 327 --SVEGIKQLYMDCQS-------------------------------------------------EEHKYNVLVELYGL- 354 (508)
T ss_dssp -----CCCCEEEEC---------------------------------------------------CHHHHHHHHHHHC--
T ss_pred --CcccceEEEEECCc-------------------------------------------------hHHHHHHHHHHHHh-
Confidence 00001111111111 11233344444444
Q ss_pred HHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE
Q 005980 483 IEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF 562 (666)
Q Consensus 483 ~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~ 562 (666)
..+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|+|++++++||+
T Consensus 355 -~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~--~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 355 -LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT--SKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS--CCCCEECC-----CCCTTCCEEEC
T ss_pred -cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC--CeEEEeCChhhcCCCccCCCEEEE
Confidence 25789999999999999999999999999999999999999999999999887 557899999999999999999999
Q ss_pred ecCC------CCcchhhhhhhhhhccCCCCcEEEE
Q 005980 563 AELS------WTPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 563 ~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
++++ +++..+.|++||++|.|+...+.++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 9999 7899999999999999976555444
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=6.5e-28 Score=270.94 Aligned_cols=338 Identities=14% Similarity=0.208 Sum_probs=211.5
Q ss_pred hcCchHHHHHHHHHHH-cCCCeeeecCCCCcHHHHHHHHHHh-cCC-------CCcEEEEeCC-cchHHHHHHHHHHhc-
Q 005980 172 SKLLPFQRDGVRFALQ-HGGRILLADEMGLGKTIQAIAVATC-FRD-------VWPVLILTPS-SLRLHWAAMIQQWLN- 240 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~-~~~~~iLad~~GlGKTi~ala~~~~-~~~-------~~~~LIv~P~-sl~~qW~~e~~~~~~- 240 (666)
..|+|+|.+++..++. .+..+|+..+||+|||++++..+.. +.. ..++|||+|+ .|..||.+++.++++
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 3699999999999885 2567899999999999986654432 211 2369999999 899999999999753
Q ss_pred ---CCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH---hcCCccEEEEcCccccCChhH
Q 005980 241 ---IPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL---MSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 241 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l---~~~~~~~vIiDEaH~~kn~~s 314 (666)
++...+.... ++....... .........|+|+|++.+....... .-..+++||+||||++...+.
T Consensus 173 ~~~~~~~~~~~~~---g~~~~~~~~------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f 243 (563)
T 3i5x_A 173 NYGLKKYACVSLV---GGTDFRAAM------NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 243 (563)
T ss_dssp CGGGTTSCEEEEC---TTSCHHHHH------HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred ccccCceeEEEEE---CCcCHHHHH------HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccch
Confidence 2222222221 221110000 0000113458999999997654332 234689999999999876542
Q ss_pred -HHHHHhhhhhhh-------cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHH
Q 005980 315 -KRTAATLPIIKK-------AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELH 386 (666)
Q Consensus 315 -~~~~~~~~l~~~-------~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 386 (666)
.....+...+.. ..+++++||||-. ... .+...+.....
T Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~------------------~~~~~~~~~~~-------------- 290 (563)
T 3i5x_A 244 RDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQ------------------KLANNIMNKKE-------------- 290 (563)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHH------------------HHTTTTCCSSE--------------
T ss_pred HHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHH------------------HHHHHhcCCCc--------------
Confidence 222333332222 3468999999831 111 11111100000
Q ss_pred HHhhhhhhhhehhhhhhhcCCcccEEEE-EecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhc
Q 005980 387 NLMKATVMIRRLKKDVLAQLPVKRRQQV-FLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYT 465 (666)
Q Consensus 387 ~ll~~~~~lrr~k~~v~~~lp~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (666)
.+.+..... ..........+.+ ..+...... .
T Consensus 291 -----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------- 323 (563)
T 3i5x_A 291 -----CLFLDTVDK-NEPEAHERIDQSVVISEKFANSI---F-------------------------------------- 323 (563)
T ss_dssp -----EEEEESSCS-SSCSSCTTEEEEEEEESSTTHHH---H--------------------------------------
T ss_pred -----eEEEeccCC-CCccccccCceEEEECchhHhhH---H--------------------------------------
Confidence 000000000 0000111111111 111111000 0
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC---CceEEEEECCCCHHHHHHHHHHhcCCCCceEEE
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAV 542 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L 542 (666)
..+..+.+.+... ..+.++|||+.....++.+...|... |+.+..+||+++..+|..+++.|+++. ..+|
T Consensus 324 ----~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vL 396 (563)
T 3i5x_A 324 ----AAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGIL 396 (563)
T ss_dssp ----HHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEE
T ss_pred ----HHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEE
Confidence 0111122222211 35789999999999999999999886 899999999999999999999999987 6789
Q ss_pred EeccccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 543 LSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 543 ~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
++|+++++|||++++++||++++|+++..+.|++||++|.|+...+ +.++..+ |...+..+.+
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--ELPFVRELED 459 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEEEchh--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999965443 4445543 4445554443
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=1.1e-27 Score=267.45 Aligned_cols=312 Identities=15% Similarity=0.147 Sum_probs=206.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEe
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLS 251 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~ 251 (666)
.++|+|.+++..++. |..+++..+||+|||+.++..+.. ..+.+|||+|+ +|+.||.+.+.++ ++. +..+.
T Consensus 44 ~~rp~Q~~~i~~il~-g~d~lv~~pTGsGKTl~~~lpal~--~~g~~lVisP~~~L~~q~~~~l~~~-gi~---~~~l~- 115 (591)
T 2v1x_A 44 KFRPLQLETINVTMA-GKEVFLVMPTGGGKSLCYQLPALC--SDGFTLVICPLISLMEDQLMVLKQL-GIS---ATMLN- 115 (591)
T ss_dssp SCCTTHHHHHHHHHT-TCCEEEECCTTSCTTHHHHHHHHT--SSSEEEEECSCHHHHHHHHHHHHHH-TCC---EEECC-
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEECCCChHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhc-CCc---EEEEe-
Confidence 589999999999887 668999999999999977655543 35789999999 8999999999987 332 21111
Q ss_pred cCCCCCccce-eEEecCCCCCCCCCCcEEEEeHHHHH---HHHHH----HhcCCccEEEEcCccccCChhHH---HHH--
Q 005980 252 QLGGSNRSGF-TIVSSNTKRNIPLDGLFNIISYDVVL---KLQNI----LMSSNFKIVIADESHFLKNAQAK---RTA-- 318 (666)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~I~sy~~l~---~~~~~----l~~~~~~~vIiDEaH~~kn~~s~---~~~-- 318 (666)
++...... ...... ........++++|++.+. ...+. +...++++||+||||.+..++.. .+.
T Consensus 116 --~~~~~~~~~~~~~~l--~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l 191 (591)
T 2v1x_A 116 --ASSSKEHVKWVHAEM--VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKAL 191 (591)
T ss_dssp --SSCCHHHHHHHHHHH--HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGG
T ss_pred --CCCCHHHHHHHHHHh--hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHH
Confidence 11111000 000000 001224568899999874 22222 23447999999999998654310 111
Q ss_pred -HhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 319 -ATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 319 -~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
.+.... ....+++|||||-..-..++...+ ... ....+.
T Consensus 192 ~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l---~~~-----------------------------------~~~~~~- 231 (591)
T 2v1x_A 192 GILKRQF-PNASLIGLTATATNHVLTDAQKIL---CIE-----------------------------------KCFTFT- 231 (591)
T ss_dssp GHHHHHC-TTSEEEEEESSCCHHHHHHHHHHT---TCC-----------------------------------SCEEEE-
T ss_pred HHHHHhC-CCCcEEEEecCCCHHHHHHHHHHh---CCC-----------------------------------CcEEEe-
Confidence 111111 356789999999422212222111 100 000000
Q ss_pred hhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHH
Q 005980 398 LKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLD 477 (666)
Q Consensus 398 ~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~ 477 (666)
.. ..-|. ....+...... ...++..+.+
T Consensus 232 --~~--~~r~n-l~~~v~~~~~~-----------------------------------------------~~~~~~~l~~ 259 (591)
T 2v1x_A 232 --AS--FNRPN-LYYEVRQKPSN-----------------------------------------------TEDFIEDIVK 259 (591)
T ss_dssp --CC--CCCTT-EEEEEEECCSS-----------------------------------------------HHHHHHHHHH
T ss_pred --cC--CCCcc-cEEEEEeCCCc-----------------------------------------------HHHHHHHHHH
Confidence 00 00111 11111111000 0012333444
Q ss_pred HHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccC
Q 005980 478 YLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAA 557 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a 557 (666)
++... ..+.++||||.....++.+...|...|+.+..+||+++..+|..++++|.++. ..+|++|.++++|||++++
T Consensus 260 ~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~--~~VlVAT~a~~~GID~p~V 336 (591)
T 2v1x_A 260 LINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE--IQVVVATVAFGMGIDKPDV 336 (591)
T ss_dssp HHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEECTTSCTTCCCSCE
T ss_pred HHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC--CeEEEEechhhcCCCcccc
Confidence 44321 25789999999999999999999999999999999999999999999999987 5678999999999999999
Q ss_pred CEEEEecCCCCcchhhhhhhhhhccCCCCcEEEE
Q 005980 558 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 558 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
+.||++++|+++..|.|++||++|.|+...+.++
T Consensus 337 ~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 337 RFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred cEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999999999987655444
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=270.97 Aligned_cols=311 Identities=16% Similarity=0.218 Sum_probs=106.8
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHH-hcCC---CCcEEEEeCC-cchHHHHHHHHHHhcCC-CC
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVAT-CFRD---VWPVLILTPS-SLRLHWAAMIQQWLNIP-PS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~-~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~~-~~ 244 (666)
..|+|+|.+++..++.. +..+|+..+||+|||++++..+. .+.. ...+||++|+ .|..||.+.+.++.... ..
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 192 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCc
Confidence 36899999999999874 46789999999999999655444 3332 2279999999 78999999988876432 22
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCC--hhHHHHHH
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKN--AQAKRTAA 319 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn--~~s~~~~~ 319 (666)
.+.... .+.... ........|+|+|++.+...... +...++++||+||||++.. ........
T Consensus 193 ~~~~~~--~~~~~~-----------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 259 (479)
T 3fmp_B 193 KLAYAV--RGNKLE-----------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (479)
T ss_dssp CEEEES--TTCCCC-----------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHH
T ss_pred eEEEEe--CCcccc-----------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHH
Confidence 222221 111111 11112346899999999776532 2224689999999998854 22334444
Q ss_pred hhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehh
Q 005980 320 TLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLK 399 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k 399 (666)
+...+....+.+++||||- .+.+.+.....+
T Consensus 260 i~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~--------------------------------------------- 290 (479)
T 3fmp_B 260 IQRMLPRNCQMLLFSATFE----DSVWKFAQKVVP--------------------------------------------- 290 (479)
T ss_dssp HHTTSCTTSEEEEEESCCC----HHHHHHHHHHSS---------------------------------------------
T ss_pred HHhhCCccceEEEEeCCCC----HHHHHHHHHHcC---------------------------------------------
Confidence 5544445678999999993 122221111111
Q ss_pred hhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHH
Q 005980 400 KDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYL 479 (666)
Q Consensus 400 ~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l 479 (666)
.. ..+.+.............+ ........|...+.+++
T Consensus 291 --------~~--~~i~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 291 --------DP--NVIKLKREEETLDTIKQYY--------------------------------VLCSSRDEKFQALCNLY 328 (479)
T ss_dssp --------SE--EEEEEC--------------------------------------------------------------
T ss_pred --------CC--eEEeccccccCcCCceEEE--------------------------------EEeCCHHHHHHHHHHHH
Confidence 00 0111110000000000000 00001123455555555
Q ss_pred HHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCE
Q 005980 480 ETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST 559 (666)
Q Consensus 480 ~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~ 559 (666)
... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. ..+|++|+++++|||++++++
T Consensus 329 ~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~--~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 329 GAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCC--CcEEEEccccccCCccccCCE
Confidence 542 5679999999999999999999999999999999999999999999999987 668999999999999999999
Q ss_pred EEEecCCCCc------chhhhhhhhhhccCCCCcEEE
Q 005980 560 VIFAELSWTP------GDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 560 VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
||++|+||++ ..+.||+||++|.|+...+.+
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp -------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 9999999865 689999999999997655433
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=273.14 Aligned_cols=359 Identities=15% Similarity=0.158 Sum_probs=222.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
..|+|||.+++..+.. +.+++++.+||+|||+++...+. .+....++||++|+ .|..||.+++.++++ .+..+
T Consensus 85 f~L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vgll 159 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLM 159 (1010)
T ss_dssp SCCCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEE
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEE
Confidence 4699999999999876 67899999999999999754443 34556789999999 899999999999985 23222
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh-HHHHHHhhhhhhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ-AKRTAATLPIIKK 326 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~-s~~~~~~~~l~~~ 326 (666)
. |... ...+..++|+|++.+...... ..-.++++||+||||++.+.. ......+...+..
T Consensus 160 t----Gd~~-------------~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 160 T----GDIT-------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp C----SSCE-------------ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred e----CCCc-------------cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 1 1110 011345889999998755432 122368999999999997753 2334444444446
Q ss_pred cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcC
Q 005980 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406 (666)
Q Consensus 327 ~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~l 406 (666)
..+.++||||+ .+..++...+..+... ++.+... ..-
T Consensus 223 ~~~il~LSATi--~n~~e~a~~l~~~~~~------------------------------------~~~vi~~-----~~r 259 (1010)
T 2xgj_A 223 KVRYVFLSATI--PNAMEFAEWICKIHSQ------------------------------------PCHIVYT-----NFR 259 (1010)
T ss_dssp TCEEEEEECCC--TTHHHHHHHHHHHHTS------------------------------------CEEEEEE-----CCC
T ss_pred CCeEEEEcCCC--CCHHHHHHHHHhhcCC------------------------------------CeEEEec-----CCC
Confidence 78899999996 3344443333211100 0000000 000
Q ss_pred CcccEEEEE----------ecCCH-HHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCC--ccccHH
Q 005980 407 PVKRRQQVF----------LDVAE-KDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDS--AEAKIP 473 (666)
Q Consensus 407 p~~~~~~v~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Kl~ 473 (666)
|....+.++ ++... .....+......+...... .......... ... ..+..... ...++.
T Consensus 260 p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~g~--~~~-~~k~~~~~~~~~~~l~ 332 (1010)
T 2xgj_A 260 PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD----DPNSTDSRGK--KGQ-TYKGGSAKGDAKGDIY 332 (1010)
T ss_dssp SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------------------------CHHH
T ss_pred cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc----cccccccccc--ccc-ccccccccccchHHHH
Confidence 111111111 11000 0001111111100000000 0000000000 000 00000000 023344
Q ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCce---------------------------------------EE
Q 005980 474 AVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVH---------------------------------------CI 514 (666)
Q Consensus 474 ~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~---------------------------------------~~ 514 (666)
.+++.+.. ..+.++|||+.....++.+...|...++. +.
T Consensus 333 ~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 333 KIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 44544443 34569999999999999999888765432 78
Q ss_pred EEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE----ecC----CCCcchhhhhhhhhhccCCCC
Q 005980 515 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AEL----SWTPGDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 515 ~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d~----~wnp~~~~Qa~gR~~R~Gq~~ 586 (666)
.+||+++..+|..+.+.|++|. ..+|++|.++++|||++++++||. ||+ +|++..+.|++||++|.|+..
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~G~--ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQEGF--LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHTTC--CSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHhcCC--CcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 8999999999999999999987 567899999999999999999998 998 999999999999999999988
Q ss_pred cEEEEEEEeCCCHHHHHHHH
Q 005980 587 SVNVYYLLANDTVDDIVWDV 606 (666)
Q Consensus 587 ~V~v~~lv~~~tiee~i~~~ 606 (666)
...+|.++.++.-++.+..+
T Consensus 489 ~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 489 RGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEEEEEECSCCCHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHH
Confidence 88888888876433344333
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=9.8e-28 Score=286.28 Aligned_cols=309 Identities=14% Similarity=0.140 Sum_probs=207.3
Q ss_pred hhcCchHHHHHHHHHHHc---CC--CeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 171 ESKLLPFQRDGVRFALQH---GG--RILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~---~~--~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
...++|+|.+++..++.. +. .+|++++||+|||++++..+. ......++||+||+ .|..||.+++.++++...
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 456899999999998862 43 689999999999999885443 33456789999999 689999999999875322
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPI 323 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 323 (666)
..+..+....+.... ...+... ......++|+|++.+... +.-.++++||+||||++.... ...+..+
T Consensus 681 i~v~~l~~~~~~~~~--~~~~~~l----~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~~~---~~~l~~l 748 (1151)
T 2eyq_A 681 VRIEMISRFRSAKEQ--TQILAEV----AEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGVRH---KERIKAM 748 (1151)
T ss_dssp CCEEEESTTSCHHHH--HHHHHHH----HTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCHHH---HHHHHHH
T ss_pred CeEEEEeCCCCHHHH--HHHHHHH----hcCCCCEEEECHHHHhCC---ccccccceEEEechHhcChHH---HHHHHHh
Confidence 333332211111110 0000000 011345889999877532 233578999999999985432 2222222
Q ss_pred hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhh
Q 005980 324 IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVL 403 (666)
Q Consensus 324 ~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~ 403 (666)
....++++|||||.++..... +. + +.... +.
T Consensus 749 -~~~~~vl~lSATp~p~~l~~~---~~----~---------------------------------~~~~~--------~i 779 (1151)
T 2eyq_A 749 -RANVDILTLTATPIPRTLNMA---MS----G---------------------------------MRDLS--------II 779 (1151)
T ss_dssp -HTTSEEEEEESSCCCHHHHHH---HT----T---------------------------------TSEEE--------EC
T ss_pred -cCCCCEEEEcCCCChhhHHHH---Hh----c---------------------------------CCCce--------EE
Confidence 256789999999964321110 00 0 00000 00
Q ss_pred hcCCccc---EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHH
Q 005980 404 AQLPVKR---RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLE 480 (666)
Q Consensus 404 ~~lp~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~ 480 (666)
..|+.. .........+. .+.+.+.
T Consensus 780 -~~~~~~r~~i~~~~~~~~~~----------------------------------------------------~i~~~il 806 (1151)
T 2eyq_A 780 -ATPPARRLAVKTFVREYDSM----------------------------------------------------VVREAIL 806 (1151)
T ss_dssp -CCCCCBCBCEEEEEEECCHH----------------------------------------------------HHHHHHH
T ss_pred -ecCCCCccccEEEEecCCHH----------------------------------------------------HHHHHHH
Confidence 011111 11111222211 1122222
Q ss_pred HHHHcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCC
Q 005980 481 TVIEAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAS 558 (666)
Q Consensus 481 ~~~~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~ 558 (666)
.....|.+++|||+.+..++.+.+.|... +.++..+||+++..+|.+++++|+++. ..+|++|+++++|||++.++
T Consensus 807 ~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~--~~VLVaT~v~e~GiDip~v~ 884 (1151)
T 2eyq_A 807 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR--FNVLVCTTIIETGIDIPTAN 884 (1151)
T ss_dssp HHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS--CCEEEESSTTGGGSCCTTEE
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEECCcceeeecccCCc
Confidence 33357899999999999999999999887 889999999999999999999999887 56789999999999999999
Q ss_pred EEEEecC-CCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 559 TVIFAEL-SWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 559 ~VI~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
+||++++ .|++..+.|++||++|.|+.. .+|.++..+
T Consensus 885 ~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 885 TIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp EEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred EEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 9999988 689999999999999998654 445555543
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-25 Score=265.45 Aligned_cols=371 Identities=13% Similarity=0.157 Sum_probs=220.0
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
...|+|||.+++..+.. |..+|++.+||+|||++++..+. .+....++||++|+ .|..||.+++.++++ .+..
T Consensus 182 ~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~Vgl 256 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGL 256 (1108)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEE
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccE
Confidence 35799999999998765 67899999999999999765544 44567789999999 899999999999985 2322
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhhh
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPIIK 325 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~ 325 (666)
+.+ +. .......|+|+|++.+...... ..-.++++||+||||++.+... ..+..+...+.
T Consensus 257 ltG---d~--------------~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~ 319 (1108)
T 3l9o_A 257 MTG---DI--------------TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 319 (1108)
T ss_dssp ECS---SC--------------BCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC
T ss_pred EeC---cc--------------ccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcC
Confidence 211 11 1112356889999988765432 1112578999999999987542 23344444445
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ 405 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~ 405 (666)
...+.++||||+ . +..++...+..+......- ...... +.-+. ..+. .
T Consensus 320 ~~~qvl~lSATi-p-n~~e~a~~l~~~~~~~~~v------------i~~~~r--------------p~pl~---~~~~-~ 367 (1108)
T 3l9o_A 320 DKVRYVFLSATI-P-NAMEFAEWICKIHSQPCHI------------VYTNFR--------------PTPLQ---HYLF-P 367 (1108)
T ss_dssp TTSEEEEEECSC-S-SCHHHHHHHHHHTCSCEEE------------EEECCC--------------SSCEE---EEEE-E
T ss_pred CCceEEEEcCCC-C-CHHHHHHHHHhhcCCCeEE------------EecCCC--------------cccce---EEEe-e
Confidence 678899999994 2 3344444433322110000 000000 00000 0000 0
Q ss_pred CCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccc---cHHHHHHHHHHH
Q 005980 406 LPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEA---KIPAVLDYLETV 482 (666)
Q Consensus 406 lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Kl~~l~~~l~~~ 482 (666)
........+.-.........+......+....... ..... . .......+. .... ....+..++..+
T Consensus 368 ~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~-~----~~~~~~~~~-~~~~~~~~~~~l~~li~~l 436 (1108)
T 3l9o_A 368 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD-----PNSTD-S----RGKKGQTYK-GGSAKGDAKGDIYKIVKMI 436 (1108)
T ss_dssp TTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------------CHHHHHHHHHHH
T ss_pred cCCcceeeeeccccchhhhhHHHHHHHHHhhhccc-----ccccc-c----ccccccccc-cccccccchhHHHHHHHHH
Confidence 00000000110111101111111111000000000 00000 0 000000000 0000 123334444443
Q ss_pred HH-cCCEEEEEeccHHHHHHHHHHHHhCCce---------------------------------------EEEEECCCCH
Q 005980 483 IE-AGCKFLIFAHHQPMLDAIHQLFLKKKVH---------------------------------------CIRIDGGTPP 522 (666)
Q Consensus 483 ~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~---------------------------------------~~~i~G~~~~ 522 (666)
.. .+.++|||+.....++.+...|...|+. +..+||+++.
T Consensus 437 ~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~ 516 (1108)
T 3l9o_A 437 WKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLP 516 (1108)
T ss_dssp HHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCH
T ss_pred HhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCH
Confidence 33 4569999999999999999888653332 7889999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecCCCCcch--------hhhhhhhhhccCCCCcEEEEEEE
Q 005980 523 ASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGD--------LIQAEDRAHRIGQVSSVNVYYLL 594 (666)
Q Consensus 523 ~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~--------~~Qa~gR~~R~Gq~~~V~v~~lv 594 (666)
.+|..+.+.|++|. .-+|++|.++++|||++++++||.++.+|++.. |.|++||++|.|......+|.++
T Consensus 517 ~~R~~v~~~F~~G~--ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~ 594 (1108)
T 3l9o_A 517 ILKEVIEILFQEGF--LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 594 (1108)
T ss_dssp HHHHHHHHHHHHTC--CCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEE
T ss_pred HHHHHHHHHHhCCC--CeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Confidence 99999999999988 668899999999999999999998887776654 99999999999998888889888
Q ss_pred eCCCHHHHHHHHHH
Q 005980 595 ANDTVDDIVWDVVR 608 (666)
Q Consensus 595 ~~~tiee~i~~~~~ 608 (666)
.++..+..+..++.
T Consensus 595 ~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 595 DEKMEPQVAKGMVK 608 (1108)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHhc
Confidence 87755544444443
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=1.4e-25 Score=258.80 Aligned_cols=322 Identities=18% Similarity=0.121 Sum_probs=212.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHH-HHHHhcC-CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAI-AVATCFR-DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~al-a~~~~~~-~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.|+|+|.+++..++..+..++++.+||+|||+++. +++..+. ...++++++|. .|..||.++++++... ...+...
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v~~~ 101 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMA 101 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEEEEe
Confidence 68999999999855557889999999999999984 4443333 46789999999 8999999999765432 1222222
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHh--cCCccEEEEcCccccCChh-HHHHHHhhhhhhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILM--SSNFKIVIADESHFLKNAQ-AKRTAATLPIIKK 326 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~--~~~~~~vIiDEaH~~kn~~-s~~~~~~~~l~~~ 326 (666)
.+. ..... .......++|+|++.+......-. -.++++||+||+|.+.... ......+...+..
T Consensus 102 ~G~---~~~~~----------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (720)
T 2zj8_A 102 TGD---YDSKD----------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG 168 (720)
T ss_dssp CSC---SSCCC----------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT
T ss_pred cCC---CCccc----------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc
Confidence 211 11100 011245689999999876543311 2367899999999987532 2333334433334
Q ss_pred cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcC
Q 005980 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406 (666)
Q Consensus 327 ~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~l 406 (666)
..++++||||+- ++.++... +....+ . . ..-
T Consensus 169 ~~~ii~lSATl~--n~~~~~~~---l~~~~~----------------~-------------------------~---~~r 199 (720)
T 2zj8_A 169 KAQIIGLSATIG--NPEELAEW---LNAELI----------------V-------------------------S---DWR 199 (720)
T ss_dssp TBEEEEEECCCS--CHHHHHHH---TTEEEE----------------E-------------------------C---CCC
T ss_pred CCeEEEEcCCcC--CHHHHHHH---hCCccc----------------C-------------------------C---CCC
Confidence 678999999983 23333221 111000 0 0 000
Q ss_pred CcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 407 PVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 407 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
|......+...... .+... .......+...+. +....+
T Consensus 200 p~~l~~~~~~~~~~--------------------------------~~~~~------~~~~~~~~~~~~~----~~~~~~ 237 (720)
T 2zj8_A 200 PVKLRRGVFYQGFV--------------------------------TWEDG------SIDRFSSWEELVY----DAIRKK 237 (720)
T ss_dssp SSEEEEEEEETTEE--------------------------------EETTS------CEEECSSTTHHHH----HHHHTT
T ss_pred CCcceEEEEeCCee--------------------------------ecccc------chhhhhHHHHHHH----HHHhCC
Confidence 11111111110000 00000 0000122333333 334578
Q ss_pred CEEEEEeccHHHHHHHHHHHHhC------------------C---------------ceEEEEECCCCHHHHHHHHHHhc
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKK------------------K---------------VHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~------------------g---------------~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
.++|||++.+..++.+...|... + ..+..+||+++..+|..+.+.|+
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 99999999999998888877643 1 24889999999999999999999
Q ss_pred CCCCceEEEEeccccccccCcccCCEEEE----ec----CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHH
Q 005980 534 EKDDVKAAVLSMKAGGVGLTLTAASTVIF----AE----LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 601 (666)
Q Consensus 534 ~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee 601 (666)
++. ..+|++|.++++|+|+++.++||. || .++++..+.|++||++|.|+.+.-.+|.++.+...+.
T Consensus 318 ~g~--~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 318 KGI--IKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TTS--SCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred CCC--CeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 987 667889999999999999999987 66 5889999999999999999988888898988887554
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=4.2e-27 Score=268.42 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=199.0
Q ss_pred hcCchHHHHHHHHHHHc-----CCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 172 SKLLPFQRDGVRFALQH-----GGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-----~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
..|+|+|.+++..++.. ..++|+..+||+|||++++..+.. +.....++|++|+ .|..||.+++.++++....
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNI 446 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCc
Confidence 47999999999988753 236788999999999998765543 3456789999999 7899999999999842222
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII 324 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~ 324 (666)
.+..+. .+.........+... ......++|+|++.+.. .+.-.++++||+||+|++.... ...+...
T Consensus 447 ~v~~l~--G~~~~~~r~~~~~~l----~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaHr~g~~q---r~~l~~~- 513 (780)
T 1gm5_A 447 HVALLI--GATTPSEKEKIKSGL----RNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQHRFGVKQ---REALMNK- 513 (780)
T ss_dssp CEEECC--SSSCHHHHHHHHHHH----HSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCCCC--------CCCCSS-
T ss_pred eEEEEe--CCCCHHHHHHHHHHH----hcCCCCEEEECHHHHhh---hhhccCCceEEecccchhhHHH---HHHHHHh-
Confidence 232221 111111100000000 01134588999987743 2334578999999999984321 1112211
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....++++|||||........ . ++. ..-.+..
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~----~------~g~--------------------------------------~~~s~i~ 545 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALA----F------YGD--------------------------------------LDVTVID 545 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHH----H------TCC--------------------------------------SSCEEEC
T ss_pred CCCCCEEEEeCCCCHHHHHHH----H------hCC--------------------------------------cceeeee
Confidence 135788999999964321100 0 000 0000111
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIE 484 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~ 484 (666)
.+|+........-. ...+...+.+.+.....
T Consensus 546 ~~p~~r~~i~~~~~-------------------------------------------------~~~~~~~l~~~i~~~l~ 576 (780)
T 1gm5_A 546 EMPPGRKEVQTMLV-------------------------------------------------PMDRVNEVYEFVRQEVM 576 (780)
T ss_dssp CCCSSCCCCEECCC-------------------------------------------------CSSTHHHHHHHHHHHTT
T ss_pred ccCCCCcceEEEEe-------------------------------------------------ccchHHHHHHHHHHHHh
Confidence 22221110000000 01123345555665556
Q ss_pred cCCEEEEEeccHH--------HHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccC
Q 005980 485 AGCKFLIFAHHQP--------MLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 485 ~g~KvlVF~~~~~--------~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gln 553 (666)
.|.+++|||.... .++.+.+.|.. .++.+..+||+++..+|.+++++|+++. ..+|++|+++++|+|
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~--~~ILVaT~vie~GID 654 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR--YDILVSTTVIEVGID 654 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS--SSBCCCSSCCCSCSC
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC--CeEEEECCCCCcccc
Confidence 7899999998543 46677788877 4788999999999999999999999887 567899999999999
Q ss_pred cccCCEEEEecCCC-CcchhhhhhhhhhccCCCCcEEEE
Q 005980 554 LTAASTVIFAELSW-TPGDLIQAEDRAHRIGQVSSVNVY 591 (666)
Q Consensus 554 L~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~ 591 (666)
++++++||++++++ +...+.|++||++|.|+...+.++
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 99999999999984 788999999999999977655443
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=8.9e-25 Score=252.05 Aligned_cols=327 Identities=17% Similarity=0.166 Sum_probs=207.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC-CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR-DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~-~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.|+|+|.+++..++..+..++++.+||+|||+++...+. .+. ..+++++++|. .|..||.++++++... ...+...
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~-g~~v~~~ 108 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI-GFKVAMT 108 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG-TCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 689999999998665688999999999999999855443 332 56799999999 6999999999655422 1122221
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH--hcCCccEEEEcCccccCChhH-HHHHHhhhhhhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL--MSSNFKIVIADESHFLKNAQA-KRTAATLPIIKK 326 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~~ 326 (666)
.+ +..... .......++|+|++.+......- .-.++++||+||+|.+.+... .....+...+ .
T Consensus 109 ~G---~~~~~~----------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~-~ 174 (715)
T 2va8_A 109 SG---DYDTDD----------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRA-K 174 (715)
T ss_dssp CS---CSSSCC----------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHH-H
T ss_pred eC---CCCCch----------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhc-c
Confidence 11 111100 01124568999999987654331 123679999999999865322 2223333222 3
Q ss_pred cceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcC
Q 005980 327 AQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQL 406 (666)
Q Consensus 327 ~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~l 406 (666)
..++++|||||- ++.++...+ ....+.. ..+ ++-+. ..+...-
T Consensus 175 ~~~ii~lSATl~--n~~~~~~~l---~~~~~~~---------------~~r--------------~~~l~---~~~~~~~ 217 (715)
T 2va8_A 175 RRNLLALSATIS--NYKQIAKWL---GAEPVAT---------------NWR--------------PVPLI---EGVIYPE 217 (715)
T ss_dssp TSEEEEEESCCT--THHHHHHHH---TCEEEEC---------------CCC--------------SSCEE---EEEEEEC
T ss_pred cCcEEEEcCCCC--CHHHHHHHh---CCCccCC---------------CCC--------------CCCce---EEEEecC
Confidence 688999999983 344443322 2111000 000 00000 0000000
Q ss_pred CcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcC
Q 005980 407 PVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAG 486 (666)
Q Consensus 407 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g 486 (666)
.......+...-... ..+. . ...+.+.+.+....+
T Consensus 218 ~~~~~~~~~~~~~~~----------------------------------------~~~~-~----~~~~~~~~~~~~~~~ 252 (715)
T 2va8_A 218 RKKKEYNVIFKDNTT----------------------------------------KKVH-G----DDAIIAYTLDSLSKN 252 (715)
T ss_dssp SSTTEEEEEETTSCE----------------------------------------EEEE-S----SSHHHHHHHHHHTTT
T ss_pred CcccceeeecCcchh----------------------------------------hhcc-c----chHHHHHHHHHHhcC
Confidence 000000010000000 0000 0 012344444444678
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCC------------------------------------ceEEEEECCCCHHHHHHHHH
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKK------------------------------------VHCIRIDGGTPPASRQALVT 530 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g------------------------------------~~~~~i~G~~~~~~R~~~i~ 530 (666)
.++|||++.....+.+...|.... ..+..+||+++..+|..+.+
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 999999999999999988887642 24888999999999999999
Q ss_pred HhcCCCCceEEEEeccccccccCcccCCEEEE----ec-------CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 531 EFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AE-------LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 531 ~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d-------~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
.|.+|. ..+|++|.++++|||+++.++||. || .++++..+.|++||++|.|+.+.-.+|.++....
T Consensus 333 ~f~~g~--~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 333 GFRQRK--IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHTTC--SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHcCC--CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999987 668899999999999999999998 88 7999999999999999999988888888887654
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=6.2e-25 Score=252.54 Aligned_cols=319 Identities=17% Similarity=0.156 Sum_probs=209.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-HhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVL 250 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~ 250 (666)
.|+|+|.+++..+.. +..++++.+||+|||+++...+ ..+...+++++++|. .|..||.++++++... ...+....
T Consensus 25 ~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~-g~~v~~~~ 102 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGIST 102 (702)
T ss_dssp CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEEC
T ss_pred CCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 689999999999665 7789999999999999985444 344456899999999 6999999999655432 12222222
Q ss_pred ecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHh--cCCccEEEEcCccccCChh-HHHHHHhhhhh---
Q 005980 251 SQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILM--SSNFKIVIADESHFLKNAQ-AKRTAATLPII--- 324 (666)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~--~~~~~~vIiDEaH~~kn~~-s~~~~~~~~l~--- 324 (666)
++ .... ........++|+|++.+......-. -.++++||+||+|.+.+.. ......+...+
T Consensus 103 G~---~~~~----------~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~ 169 (702)
T 2p6r_A 103 GD---YESR----------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM 169 (702)
T ss_dssp SS---CBCC----------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH
T ss_pred CC---CCcc----------hhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc
Confidence 11 1110 0111256699999999876543211 2367899999999987532 12222222222
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....++++||||+- ++.++.. ++....+.. .
T Consensus 170 ~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~~--------------------------------------------~ 200 (702)
T 2p6r_A 170 NKALRVIGLSATAP--NVTEIAE---WLDADYYVS--------------------------------------------D 200 (702)
T ss_dssp CTTCEEEEEECCCT--THHHHHH---HTTCEEEEC--------------------------------------------C
T ss_pred CcCceEEEECCCcC--CHHHHHH---HhCCCcccC--------------------------------------------C
Confidence 24578899999983 2444332 222111000 0
Q ss_pred cCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCc---cccHHHHHHHHHH
Q 005980 405 QLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSA---EAKIPAVLDYLET 481 (666)
Q Consensus 405 ~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Kl~~l~~~l~~ 481 (666)
.-|......+...... . +.... ..++. +.+.+.+
T Consensus 201 ~r~~~l~~~~~~~~~~--------------------------------~----------~~~~~~~~~~~~~-~~~~~~~ 237 (702)
T 2p6r_A 201 WRPVPLVEGVLCEGTL--------------------------------E----------LFDGAFSTSRRVK-FEELVEE 237 (702)
T ss_dssp CCSSCEEEEEECSSEE--------------------------------E----------EEETTEEEEEECC-HHHHHHH
T ss_pred CCCccceEEEeeCCee--------------------------------e----------ccCcchhhhhhhh-HHHHHHH
Confidence 0000000000000000 0 00000 00000 2333334
Q ss_pred HHHcCCEEEEEeccHHHHHHHHHHHHhC------------------------------CceEEEEECCCCHHHHHHHHHH
Q 005980 482 VIEAGCKFLIFAHHQPMLDAIHQLFLKK------------------------------KVHCIRIDGGTPPASRQALVTE 531 (666)
Q Consensus 482 ~~~~g~KvlVF~~~~~~~~~l~~~L~~~------------------------------g~~~~~i~G~~~~~~R~~~i~~ 531 (666)
....+.++|||++.....+.+...|... +..+..+||+++.++|..+.+.
T Consensus 238 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 317 (702)
T 2p6r_A 238 CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 317 (702)
T ss_dssp HHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHH
Confidence 4457899999999999988888877642 1246779999999999999999
Q ss_pred hcCCCCceEEEEeccccccccCcccCCEEEE----ec---CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHH
Q 005980 532 FQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AE---LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 600 (666)
Q Consensus 532 F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d---~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tie 600 (666)
|++|. ..+|++|.++++|+|++++++||. || .++++..+.|++||++|.|+.+.-.+|.++.+...+
T Consensus 318 f~~g~--~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 318 FRRGN--IKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HHTTS--CCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HHCCC--CeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 99987 668899999999999999999998 66 688999999999999999998888889998877644
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=3.4e-24 Score=252.15 Aligned_cols=370 Identities=17% Similarity=0.181 Sum_probs=222.7
Q ss_pred hhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 170 IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
+...|+|+|.+++..++. |..++++.+||+|||++++..+.. ......+||++|+ .|..||.+++.++++ ...+.
T Consensus 36 ~~f~l~~~Q~~aI~~il~-g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~ 112 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIG 112 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT-TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCEE
T ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEE
Confidence 345799999999998876 668999999999999976554443 3456679999999 899999999998763 22222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH--hcCCccEEEEcCccccCChhH-HHHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL--MSSNFKIVIADESHFLKNAQA-KRTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~ 324 (666)
.+.+ +.. ......++|+|++.+......- ...++++||+||||++.+... ..+..+...+
T Consensus 113 ~l~G---~~~--------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 113 LITG---DVQ--------------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML 175 (997)
T ss_dssp EECS---SCE--------------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS
T ss_pred EEeC---CCc--------------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc
Confidence 2211 110 1123458899999997654321 224689999999999876431 1233333333
Q ss_pred hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhh
Q 005980 325 KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLA 404 (666)
Q Consensus 325 ~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~ 404 (666)
....+.++|||||- +..++...+....... ...+. . .
T Consensus 176 ~~~v~iIlLSAT~~--n~~ef~~~l~~~~~~~-----------------------------------~~vi~-~-----~ 212 (997)
T 4a4z_A 176 PQHVKFILLSATVP--NTYEFANWIGRTKQKN-----------------------------------IYVIS-T-----P 212 (997)
T ss_dssp CTTCEEEEEECCCT--THHHHHHHHHHHHTCC-----------------------------------EEEEE-C-----S
T ss_pred ccCCCEEEEcCCCC--ChHHHHHHHhcccCCc-----------------------------------eEEEe-c-----C
Confidence 45678899999982 3334333332211000 00000 0 0
Q ss_pred cCCcccEEEEE--------ecCC-HHHHHHHHHHHHHHHHHHhHHH----------------------hcC---------
Q 005980 405 QLPVKRRQQVF--------LDVA-EKDMRQIYALFRELEVVKGKIK----------------------ACK--------- 444 (666)
Q Consensus 405 ~lp~~~~~~v~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------~~~--------- 444 (666)
.-|....+.++ +... ......|......+........ ...
T Consensus 213 ~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 292 (997)
T 4a4z_A 213 KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTR 292 (997)
T ss_dssp SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------------
T ss_pred CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 00111111110 1100 0000111111100000000000 000
Q ss_pred --CHHHHh-hchhhHHHHHH-hhhcCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCc---------
Q 005980 445 --SEEEVQ-SLKFTEKNLIN-KIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKV--------- 511 (666)
Q Consensus 445 --~~~~~~-~~~~~~~~~~~-~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~--------- 511 (666)
...... ........... .........++..+++.+.. ....++|||+.....++.+...|...|+
T Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 370 (997)
T 4a4z_A 293 GGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI 370 (997)
T ss_dssp ------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 000000 00000000000 00011233456677777766 3567999999999999999998877655
Q ss_pred ------------------------------eEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE
Q 005980 512 ------------------------------HCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 512 ------------------------------~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
.+..+||+++..+|..+.+.|+.+. ..+|++|.++++|||+++ .+||
T Consensus 371 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~--~kVLvAT~~~a~GIDiP~-~~VV 447 (997)
T 4a4z_A 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF--IKVLFATETFAMGLNLPT-RTVI 447 (997)
T ss_dssp HHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHHSCCCCC-SEEE
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC--CcEEEEchHhhCCCCCCC-ceEE
Confidence 4789999999999999999999988 667999999999999999 7777
Q ss_pred EecCCC---------CcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 005980 562 FAELSW---------TPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVV 607 (666)
Q Consensus 562 ~~d~~w---------np~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~ 607 (666)
+++.++ ++..+.|++||++|.|......+|.+...+..+...+...
T Consensus 448 i~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 448 FSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp ESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred EeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 766655 9999999999999999988888888887666666555433
No 42
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.90 E-value=2.6e-22 Score=234.79 Aligned_cols=341 Identities=14% Similarity=0.145 Sum_probs=202.1
Q ss_pred hcCchHHHHHHHHHHHc-------------CCCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCC-cchHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQH-------------GGRILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPS-SLRLHWAAM 234 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-------------~~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~-sl~~qW~~e 234 (666)
..|||||.+|+..++.+ +.++++.++||+|||++++.++..+.. ..++|||||+ .|..||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 46999999999998752 356899999999999999877765542 3589999997 899999999
Q ss_pred HHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH----hcCCccEEEEcCccccC
Q 005980 235 IQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL----MSSNFKIVIADESHFLK 310 (666)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l----~~~~~~~vIiDEaH~~k 310 (666)
+.+|.+... .++....... ... ...+..|+|+|++.+....... ....+.+||+||||+..
T Consensus 350 f~~f~~~~v---------~~~~s~~~l~--~~L----~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 350 YQRFSPDSV---------NGSENTAGLK--RNL----DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHTTSTTCS---------SSSCCCHHHH--HHH----HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred HHHhccccc---------ccccCHHHHH--HHh----cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 999863210 0111110000 000 0124568999999998765421 12268899999999985
Q ss_pred ChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhh
Q 005980 311 NAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMK 390 (666)
Q Consensus 311 n~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~ 390 (666)
... ..+.+...+ ...++++|||||....-.. +--....-|+.
T Consensus 415 ~~~--~~~~I~~~~-p~a~~lgfTATP~~~~~~~----------~~~~t~~~FG~------------------------- 456 (1038)
T 2w00_A 415 FGE--AQKNLKKKF-KRYYQFGFTGTPIFPENAL----------GSETTASVFGR------------------------- 456 (1038)
T ss_dssp HHH--HHHHHHHHC-SSEEEEEEESSCCCSTTCT----------TSCCHHHHHCS-------------------------
T ss_pred chH--HHHHHHHhC-CcccEEEEeCCccccccch----------hhhHHHHHhCC-------------------------
Confidence 432 233333322 4468899999997532100 00000011110
Q ss_pred hhhhhhehhhhhhh-c-CCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCc
Q 005980 391 ATVMIRRLKKDVLA-Q-LPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSA 468 (666)
Q Consensus 391 ~~~~lrr~k~~v~~-~-lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (666)
.+....++..+.. . +|. ...+....+.. ... . ............. ...+ ..
T Consensus 457 -~i~~Y~l~~AI~dg~l~p~---~v~y~~v~~~~----~~~----~-------~e~d~~~~~~i~~------~~~l--~~ 509 (1038)
T 2w00_A 457 -ELHSYVITDAIRDEKVLKF---KVDYNDVRPQF----KSL----E-------TETDEKKLSAAEN------QQAF--LH 509 (1038)
T ss_dssp -EEEEECHHHHHHHTSSCCE---EEEECCCCGGG----HHH----H-------TCCCHHHHHHTCS------TTTT--TC
T ss_pred -eeEeecHHHHHhCCCcCCe---EEEEEeccchh----hhc----c-------ccccHHHHHHHHH------HHHh--cC
Confidence 0000011111111 1 121 11122222110 000 0 0000000000000 0001 12
Q ss_pred cccHHHHHHHHHHHH-H---------cCCEEEEEeccHHHHHHHHHHHHhCC------------ceE-EEEECCC-----
Q 005980 469 EAKIPAVLDYLETVI-E---------AGCKFLIFAHHQPMLDAIHQLFLKKK------------VHC-IRIDGGT----- 520 (666)
Q Consensus 469 ~~Kl~~l~~~l~~~~-~---------~g~KvlVF~~~~~~~~~l~~~L~~~g------------~~~-~~i~G~~----- 520 (666)
..++..+.+.+.... . .+.+++|||..+.++..+...|.+.+ +++ +.++|..
T Consensus 510 ~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~ 589 (1038)
T 2w00_A 510 PMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQN 589 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccc
Confidence 334555555443322 1 35699999999999999999887654 454 4555531
Q ss_pred ---------------CH-----------------------------HHHHHHHHHhcCCCCceEEEEeccccccccCccc
Q 005980 521 ---------------PP-----------------------------ASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTA 556 (666)
Q Consensus 521 ---------------~~-----------------------------~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~ 556 (666)
+. ..|..++++|++++ .-+|++++.+.+|+|.+.
T Consensus 590 ~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~--i~ILIvvd~lltGfDiP~ 667 (1038)
T 2w00_A 590 AIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQD--IDLLIVVGMFLTGFDAPT 667 (1038)
T ss_dssp -CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTS--SSEEEESSTTSSSCCCTT
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCC--CeEEEEcchHHhCcCccc
Confidence 11 14888999999887 567888899999999999
Q ss_pred CCEEEEecCCCCcchhhhhhhhhhccCCC-C-cEEEEEEEe
Q 005980 557 ASTVIFAELSWTPGDLIQAEDRAHRIGQV-S-SVNVYYLLA 595 (666)
Q Consensus 557 a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~-~-~V~v~~lv~ 595 (666)
+ +++++|.|.+...+.||+||+.|.+.. | ...|+.++.
T Consensus 668 l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 668 L-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp E-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred c-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9 677889999999999999999999874 3 366777663
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.90 E-value=7.8e-23 Score=242.60 Aligned_cols=280 Identities=17% Similarity=0.135 Sum_probs=185.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.+|.|+|.+++..++. |..+|+..+||+|||+.++..+.. +.....+||++|+ .|..|+.+.+.++. .....+..+
T Consensus 77 f~pt~iQ~~ai~~il~-g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l 154 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGF 154 (1104)
T ss_dssp SCCCHHHHHHHHHHTT-TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEE
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEE
Confidence 3689999999999887 668999999999999976655443 3456779999999 89999999999965 222233333
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChh-------------HHH
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQ-------------AKR 316 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~-------------s~~ 316 (666)
.++ ............. ......|+|+|++.+......+...++++||+||||++...+ ...
T Consensus 155 ~Gg--~~~~er~~~~~~l----~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 155 YSS--MKKEEKEKFEKSF----EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp CTT--CCTTHHHHHHHHH----HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred eCC--CCHHHHHHHHHHH----hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 221 1110000000000 001246899999999877666666789999999999875421 111
Q ss_pred HHHhhhhhh-----------hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHH
Q 005980 317 TAATLPIIK-----------KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEEL 385 (666)
Q Consensus 317 ~~~~~~l~~-----------~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 385 (666)
...+...+. ...+.+++||||......+.+ +
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~--------------------------------------~ 270 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL--------------------------------------F 270 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH--------------------------------------H
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH--------------------------------------h
Confidence 233333333 456889999997554433211 0
Q ss_pred HHHhhhhhhhhehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhc
Q 005980 386 HNLMKATVMIRRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYT 465 (666)
Q Consensus 386 ~~ll~~~~~lrr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (666)
...+. +.+.. ...+.......++..
T Consensus 271 ~~~l~--i~v~~------~~~~~~~i~~~~~~~----------------------------------------------- 295 (1104)
T 4ddu_A 271 RDLLN--FTVGR------LVSVARNITHVRISS----------------------------------------------- 295 (1104)
T ss_dssp HHHTC--CCCCB------CCCCCCCEEEEEESC-----------------------------------------------
T ss_pred hccee--EEecc------CCCCcCCceeEEEec-----------------------------------------------
Confidence 00000 00000 001111111112111
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEE-EEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCI-RIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~-~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
.|...+.+++.. .+.++|||++....++.+...|...|+++. .+|| +|.+ +++|++|. ..+|++
T Consensus 296 ----~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~--~~VLVa 360 (1104)
T 4ddu_A 296 ----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGK--INILIG 360 (1104)
T ss_dssp ----CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTS--CSEEEE
T ss_pred ----CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCC--CCEEEE
Confidence 244455666655 368999999999999999999999999998 8888 3555 99999988 445666
Q ss_pred ----ccccccccCccc-CCEEEEecCCC
Q 005980 545 ----MKAGGVGLTLTA-ASTVIFAELSW 567 (666)
Q Consensus 545 ----t~a~~~GlnL~~-a~~VI~~d~~w 567 (666)
|+++++|||+++ +++||++|+|-
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 44
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.87 E-value=3.6e-21 Score=193.32 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=136.0
Q ss_pred CCcccEEEEEecCCHHHHHHHHHHHHHHH-HHHhHHHhcC--CHH---HHhhchhhHHHHHHhhhc--------------
Q 005980 406 LPVKRRQQVFLDVAEKDMRQIYALFRELE-VVKGKIKACK--SEE---EVQSLKFTEKNLINKIYT-------------- 465 (666)
Q Consensus 406 lp~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~-------------- 465 (666)
-|.+.+..++++|++.|++.|..+..... .+........ ... .+..+-...+.+++..+.
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 38899999999999999999988875322 1211111111 100 111111111222222111
Q ss_pred -----CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceE
Q 005980 466 -----DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540 (666)
Q Consensus 466 -----~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 540 (666)
...|+|+..|-++|..+.+.|+||||||++..++|.|+++|..+|++|.+++|++... +++. .+.++.+
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i 173 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTV 173 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceE
Confidence 0247899999999999999999999999999999999999999999999999996543 2221 1334567
Q ss_pred EEEeccccccccC-----cccCCEEEEecCCCCcchh-hhhhhhhhcc--CCCCcEEEEEEEeCCCHHHHHHHH
Q 005980 541 AVLSMKAGGVGLT-----LTAASTVIFAELSWTPGDL-IQAEDRAHRI--GQVSSVNVYYLLANDTVDDIVWDV 606 (666)
Q Consensus 541 ~L~st~a~~~Gln-----L~~a~~VI~~d~~wnp~~~-~Qa~gR~~R~--Gq~~~V~v~~lv~~~tiee~i~~~ 606 (666)
+|+ +.+||.|+| ++.|++||.||+.|||... .||+.|+||+ ||+++|.||||++.+|+|+.+...
T Consensus 174 ~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 174 HLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp EEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred EEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 776 568888886 8999999999999999997 9999999999 678999999999999999999876
No 45
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.87 E-value=1.2e-21 Score=211.54 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=85.9
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCE-----
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAAST----- 559 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~----- 559 (666)
.+.++|||++....++.+.+.|...|+++..+||. +|.+++++|+++. ..+|++|+++++|+|++ ..+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECchHHcCcccC-CcEEEecC
Confidence 46689999999999999999999999999999996 6889999999987 66899999999999999 444
Q ss_pred ------------EEEecCCCCcchhhhhhhhhhccCCCCc
Q 005980 560 ------------VIFAELSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 560 ------------VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
||+++.+.+...+.|++||++|.|..+.
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778899999999999999999996543
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.86 E-value=1.3e-21 Score=232.26 Aligned_cols=317 Identities=15% Similarity=0.149 Sum_probs=198.3
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCC----cEE
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPS----EIV 247 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~----~i~ 247 (666)
+ |+|.+++..++. |..+|+..+||+|||+.++.++..+ ....++||++|+ .|..|+.+.+.+++..... .+.
T Consensus 58 p-~iQ~~ai~~il~-g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 58 R-AIQKMWAKRILR-KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp C-HHHHHHHHHHHT-TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred H-HHHHHHHHHHHh-CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 7 899999999886 6789999999999998555555443 345679999999 8999999999998743222 222
Q ss_pred EEEecCCCCCccc-eeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhh--
Q 005980 248 VVLSQLGGSNRSG-FTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPII-- 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-- 324 (666)
.+. ++..... .... ..... ..|+|+|++.+......+ .++++||+||||++.+.+.. ...+...+
T Consensus 136 ~~~---Gg~~~~~~~~~~-----~~l~~-~~IlV~TP~~L~~~l~~L--~~l~~lViDEah~~l~~~~~-~~~i~~~lgf 203 (1054)
T 1gku_B 136 YYH---GRIPKREKENFM-----QNLRN-FKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKASKN-VDKLLHLLGF 203 (1054)
T ss_dssp ECC---SSCCSHHHHHHH-----HSGGG-CSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTSTHH-HHHHHHHTTE
T ss_pred EEe---CCCChhhHHHHH-----hhccC-CCEEEEcHHHHHHHHHHh--ccCCEEEEeChhhhhhcccc-HHHHHHHhCc
Confidence 221 1211110 0000 00111 468999999998765543 27889999999998763322 22222111
Q ss_pred ---------hhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhh
Q 005980 325 ---------KKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMI 395 (666)
Q Consensus 325 ---------~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~l 395 (666)
......+++|||+-.. .++.. .+ +..... +.+
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~---------------------~~~~~~--i~v 244 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------EL---------------------FRQLLN--FDI 244 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HH---------------------HHHHHC--CCC
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HH---------------------hhcceE--EEc
Confidence 1234568999997432 11100 00 000000 000
Q ss_pred hehhhhhhhcCCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHH
Q 005980 396 RRLKKDVLAQLPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAV 475 (666)
Q Consensus 396 rr~k~~v~~~lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l 475 (666)
. . ...+.......+++ ..|...+
T Consensus 245 ~---~---~~~~~~~i~~~~~~---------------------------------------------------~~k~~~L 267 (1054)
T 1gku_B 245 G---S---SRITVRNVEDVAVN---------------------------------------------------DESISTL 267 (1054)
T ss_dssp S---C---CEECCCCEEEEEES---------------------------------------------------CCCTTTT
T ss_pred c---C---cccCcCCceEEEec---------------------------------------------------hhHHHHH
Confidence 0 0 00011111111111 1233344
Q ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe----ccccccc
Q 005980 476 LDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS----MKAGGVG 551 (666)
Q Consensus 476 ~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s----t~a~~~G 551 (666)
.+++.. .+.++||||.....++.+...|... +++..+||++. +++++|++|. ..+|++ |+++++|
T Consensus 268 ~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~--~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 268 SSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGE--IDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp HHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTS--CSEEEEECC------CC
T ss_pred HHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCC--CcEEEEecCCCCeeEec
Confidence 454443 2678999999999999999999988 99999999873 7889999887 344555 8999999
Q ss_pred cCcccC-CEEEEecCC----------------------------------------------------------------
Q 005980 552 LTLTAA-STVIFAELS---------------------------------------------------------------- 566 (666)
Q Consensus 552 lnL~~a-~~VI~~d~~---------------------------------------------------------------- 566 (666)
||++++ ++||++++|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 005980 567 -------WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLEN 613 (666)
Q Consensus 567 -------wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K~~~ 613 (666)
.+...|.||+||++|.|.......+-++..+ |..++..+.++...
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 7899999999999998876421223333333 56677777776654
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=3.3e-21 Score=196.41 Aligned_cols=213 Identities=15% Similarity=0.226 Sum_probs=138.2
Q ss_pred eecCcchhHHHHHHHHhcCcceeecccc----HHHHHHHHhcccCCchhhhccCCChhhhhcCchHHHHHHHHHHHcCCC
Q 005980 116 TFPVPFLSSAEKVLSEISGYNVEIENLH----PLVQRAIASASAAPDLREKYDQIPAHIESKLLPFQRDGVRFALQHGGR 191 (666)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~p~Q~~~v~~~~~~~~~ 191 (666)
.+|.+.++.+.+++++. ++.+.+.... ++....+......+.+ .+..-...|+|||.+++.+++.+ ++
T Consensus 59 ~lp~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~------~~~~~~~~l~~~Q~~ai~~~l~~-~~ 130 (282)
T 1rif_A 59 LLPFGLVGQIKKFCDNF-GYKAWIDPQINEKEELSRKDFDEWLSKLEI------YSGNKRIEPHWYQKDAVFEGLVN-RR 130 (282)
T ss_dssp EEEGGGGGGHHHHHHHT-TCCEEECGGGGCCCCCCHHHHHHHHHTCCC------EETTEECCCCHHHHHHHHHHHHH-SE
T ss_pred ccccchHHHHHHHHHhc-CCeeEecCccCCCCCCCHHHHHhHHhHHHH------hcCCCccCccHHHHHHHHHHHhc-CC
Confidence 58888888888888775 5665543211 1000011000000000 00011147999999999999885 46
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNT 268 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 268 (666)
++++++||+|||+++++++..+. ..+++|||||+ +|+.||.+++.+|...+...+..+. ++.....
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~---~~~~~~~-------- 199 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG---GGASKDD-------- 199 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS---TTCSSTT--------
T ss_pred eEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe---CCCcchh--------
Confidence 78899999999999988776542 34589999999 8999999999999754333332221 1111110
Q ss_pred CCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCCCChHHHHHH
Q 005980 269 KRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPALSRPIELFKQ 348 (666)
Q Consensus 269 ~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~ 348 (666)
.......|+|+||+.+.+..... ..++++||+||||++.+. .+..+...+..+.++++|||||. +...+++.+
T Consensus 200 --~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l 272 (282)
T 1rif_A 200 --KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLR-DGKANIMQY 272 (282)
T ss_dssp --CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHH
T ss_pred --hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHH
Confidence 11234569999999886653322 247899999999999864 34444444446899999999995 445677777
Q ss_pred HHHhCC
Q 005980 349 LEALYP 354 (666)
Q Consensus 349 l~~l~p 354 (666)
..+++|
T Consensus 273 ~~l~g~ 278 (282)
T 1rif_A 273 VGMFGE 278 (282)
T ss_dssp HHHHCE
T ss_pred HHhcCC
Confidence 777665
No 48
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=1.7e-20 Score=185.63 Aligned_cols=190 Identities=19% Similarity=0.186 Sum_probs=136.4
Q ss_pred cCCCcccccccceeeecCcchhHHHHHHHHhcCcceeeccccHHHHHHHHhcccCCchhhhccCC-ChhhhhcCchHHHH
Q 005980 102 KIPKATWNAKERLWTFPVPFLSSAEKVLSEISGYNVEIENLHPLVQRAIASASAAPDLREKYDQI-PAHIESKLLPFQRD 180 (666)
Q Consensus 102 ~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~L~p~Q~~ 180 (666)
.+|...|+.....|..+...+..+...+++. ++.+.-+.+.. . .. .......|+|||.+
T Consensus 41 ~l~~~~w~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~------------~-------~~p~~~~~~~l~~~Q~~ 100 (237)
T 2fz4_A 41 HVPHAKFDSRSGTYRALAFRYRDIIEYFESN-GIEFVDNAADP------------I-------PTPYFDAEISLRDYQEK 100 (237)
T ss_dssp CCTTCEEETTTTEEEEEGGGHHHHHHHHHHT-TCCEEEESCCC------------C-------CCCCCCCCCCCCHHHHH
T ss_pred cCCCceeccccchhhcchhhHHHHHHHHHHc-CCCcccccccc------------C-------CCccccCCCCcCHHHHH
Confidence 7888999999999999988888888777764 44332221110 0 11 11224589999999
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCcc
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRS 259 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~ 259 (666)
++..+++. +++|++++||+|||+++++++... ..++||+||+ +|+.||.+++.+ ++.. .+..+. +...
T Consensus 101 ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~-~~~~--~v~~~~----g~~~- 169 (237)
T 2fz4_A 101 ALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGI-FGEE--YVGEFS----GRIK- 169 (237)
T ss_dssp HHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGG-GCGG--GEEEES----SSCB-
T ss_pred HHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh-CCCC--eEEEEe----CCCC-
Confidence 99998874 458999999999999999888775 5789999999 899999999998 4321 132221 1111
Q ss_pred ceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCC
Q 005980 260 GFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~ 339 (666)
....++|+||+.+......+. .+|++||+||||++.+.......... ...++++|||||.+
T Consensus 170 --------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~~~i~~~~----~~~~~l~LSATp~r 230 (237)
T 2fz4_A 170 --------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYVQIAQMS----IAPFRLGLTATFER 230 (237)
T ss_dssp --------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTHHHHHHTC----CCSEEEEEEESCC-
T ss_pred --------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHHHHHHHhc----cCCEEEEEecCCCC
Confidence 134588999999987766543 46999999999999887654432222 57899999999976
Q ss_pred CC
Q 005980 340 SR 341 (666)
Q Consensus 340 n~ 341 (666)
++
T Consensus 231 ~D 232 (237)
T 2fz4_A 231 ED 232 (237)
T ss_dssp --
T ss_pred CC
Confidence 64
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=9.9e-21 Score=205.66 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=87.0
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEec
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAE 564 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d 564 (666)
.+.++|||++....++.+...|...|+.+..++|.+ ++++++.|+++. ..+|++|+++++|||++. ++||.++
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~--~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTD--WDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSC--CSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCC--ceEEEECCHHHhCcCCCC-CEEEECC
Confidence 467999999999999999999999999999999865 467899999887 668999999999999999 9999988
Q ss_pred --------------------CCCCcchhhhhhhhhhccCCCCc
Q 005980 565 --------------------LSWTPGDLIQAEDRAHRIGQVSS 587 (666)
Q Consensus 565 --------------------~~wnp~~~~Qa~gR~~R~Gq~~~ 587 (666)
.|.++..+.|++||++|.|....
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g 302 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCc
Confidence 88999999999999999997443
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.84 E-value=7.1e-21 Score=205.89 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=78.8
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE--
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF-- 562 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~-- 562 (666)
.+.++||||.....++.+.+.|...|+++..+|| ++|.++++.|+++. ..+|++|+++++|+|++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~--~~vLVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKK--PDFILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CC--CSEEEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCC--ceEEEECChhheeeccC-ceEEEeCC
Confidence 5789999999999999999999999999999999 47889999999987 66889999999999999 999985
Q ss_pred -----------------ecCCCCcchhhhhhhhhhccCCC
Q 005980 563 -----------------AELSWTPGDLIQAEDRAHRIGQV 585 (666)
Q Consensus 563 -----------------~d~~wnp~~~~Qa~gR~~R~Gq~ 585 (666)
++.|.++..+.|++||++|.|..
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 288 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 288 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCCC
Confidence 88899999999999999998543
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.84 E-value=1.1e-20 Score=213.03 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=86.2
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE--
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF-- 562 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~-- 562 (666)
.+.++||||.....++.+...|...|+++..+|| ++|.++++.|+++. ..+|++|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~--~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGD--WDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCC--CSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCC--ceEEEECchhhcceeeC-CcEEEECC
Confidence 5889999999999999999999999999999999 38999999999987 66789999999999999 999997
Q ss_pred ------------------ecCCCCcchhhhhhhhhhccCCCC
Q 005980 563 ------------------AELSWTPGDLIQAEDRAHRIGQVS 586 (666)
Q Consensus 563 ------------------~d~~wnp~~~~Qa~gR~~R~Gq~~ 586 (666)
+++|.++..+.|++||++|.|..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 568888899999999999994333
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.83 E-value=1.8e-20 Score=209.98 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=181.3
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHH-HHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQA-IAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSN 257 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~ 257 (666)
++..++ .+..+|+..+||+|||+++ +.++..+ ....++||++|+ .|..|+.+++... .+. +. ...
T Consensus 179 ~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~------~v~--~~---~~~ 246 (618)
T 2whx_A 179 DEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL------PIR--YQ---TPA 246 (618)
T ss_dssp CGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE--EC---CTT
T ss_pred CHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC------cee--Ee---ccc
Confidence 344333 4778999999999999985 5455443 345589999999 7888888776521 111 11 000
Q ss_pred ccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-HHhcCCccEEEEcCccccCChhHH-HHHHhhhhhh-hcceEEEee
Q 005980 258 RSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-ILMSSNFKIVIADESHFLKNAQAK-RTAATLPIIK-KAQYALLLS 334 (666)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~~-~~~~~llLT 334 (666)
. .........+.++++..+..... ...-.++++||+||||++ +.... ....+...+. ...+.+++|
T Consensus 247 l----------~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 247 V----------KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp S----------SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred c----------eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEE
Confidence 0 00111223466778877664322 112357899999999998 43322 2222333222 457889999
Q ss_pred ccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCcccEEEE
Q 005980 335 GTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKRRQQV 414 (666)
Q Consensus 335 gTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~~~~v 414 (666)
|||-..- .+ | .+ .-+ ....+
T Consensus 316 AT~~~~~-~~------------------~-------------------------------~~--------~~~--~~~~v 335 (618)
T 2whx_A 316 ATPPGST-DP------------------F-------------------------------PQ--------SNS--PIEDI 335 (618)
T ss_dssp SSCTTCC-CS------------------S-------------------------------CC--------CSS--CEEEE
T ss_pred CCCchhh-hh------------------h-------------------------------hc--------cCC--ceeee
Confidence 9993221 00 0 00 000 00011
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEEEEec
Q 005980 415 FLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAH 494 (666)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~ 494 (666)
...... .+...+.+.+. +.+.++|||++
T Consensus 336 ~~~~~~-------------------------------------------------~~~~~ll~~l~---~~~~~~LVF~~ 363 (618)
T 2whx_A 336 EREIPE-------------------------------------------------RSWNTGFDWIT---DYQGKTVWFVP 363 (618)
T ss_dssp ECCCCS-------------------------------------------------SCCSSSCHHHH---HCCSCEEEECS
T ss_pred cccCCH-------------------------------------------------HHHHHHHHHHH---hCCCCEEEEEC
Confidence 100000 00001122222 35779999999
Q ss_pred cHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEE--------------
Q 005980 495 HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTV-------------- 560 (666)
Q Consensus 495 ~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~V-------------- 560 (666)
....++.+.+.|...|+++..+||. +|.+++++|+++. ..+|++|+++++|||++ +++|
T Consensus 364 s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~--~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 364 SIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD--WDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC--CSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECS
T ss_pred ChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC--cEEEEECcHHHcCcccC-ceEEEECcceecceeccc
Confidence 9999999999999999999999984 7889999999887 66899999999999997 8887
Q ss_pred ------EEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC-CHHHHHHHHHHHHH
Q 005980 561 ------IFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND-TVDDIVWDVVRSKL 611 (666)
Q Consensus 561 ------I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~-tiee~i~~~~~~K~ 611 (666)
|+++.|-++..+.||+||++|.|..+.. .|.|+... .-|...+..++.+.
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECSCCCCCCTTCHHHHHHHH
T ss_pred CCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEccCCchhhHHHHHHHHhHh
Confidence 7777788889999999999999865443 45555522 22334445555544
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=1.1e-20 Score=205.75 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=88.8
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE--
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF-- 562 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~-- 562 (666)
.+.++|||+.....++.+...|...|+.+..++|. +|.++++.|+++. ..+|++|+++++|||+++ ++||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~--~~iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGD--WDFVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCC--CSEEEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCC--ceEEEECChHHhCeecCC-CEEEECC
Confidence 47899999999999999999999999999999984 6788999999887 667899999999999999 99998
Q ss_pred ------------------ecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 563 ------------------AELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 563 ------------------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
+|+|.++..+.||+||++|.|.... ..|.|+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7799999999999999999996333 334555554
No 54
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.83 E-value=6.8e-20 Score=210.42 Aligned_cols=306 Identities=14% Similarity=0.146 Sum_probs=193.9
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--CC--CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEE
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--RD--VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVV 249 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--~~--~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~ 249 (666)
.+.|++++..++..+..+++..+||+|||.+.-.++... .. ...++|++|+ .+..|+...+.+.++......+..
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~ 174 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGY 174 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEE
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecc
Confidence 346888888888777678999999999999543333221 11 3459999999 677888888887776433222111
Q ss_pred EecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-HHhcCCccEEEEcCccc-cCChhH--HHHHHhhhhhh
Q 005980 250 LSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-ILMSSNFKIVIADESHF-LKNAQA--KRTAATLPIIK 325 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-~l~~~~~~~vIiDEaH~-~kn~~s--~~~~~~~~l~~ 325 (666)
... +. ........+.++|.+.+.+... ...-.++++||+||+|. ..+... ...+.+....
T Consensus 175 ~i~--------~~-------~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~- 238 (773)
T 2xau_A 175 SIR--------FE-------NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR- 238 (773)
T ss_dssp EET--------TE-------EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-
T ss_pred eec--------cc-------cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-
Confidence 000 00 0011244588999998876542 22345789999999995 322221 1222222221
Q ss_pred hcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhc
Q 005980 326 KAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQ 405 (666)
Q Consensus 326 ~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~ 405 (666)
...+.+++|||+- ..++.. ++.. . +++ . ... ..
T Consensus 239 ~~~~iIl~SAT~~---~~~l~~---~~~~---------------~---------------------~vi-~-v~g---r~ 271 (773)
T 2xau_A 239 PDLKIIIMSATLD---AEKFQR---YFND---------------A---------------------PLL-A-VPG---RT 271 (773)
T ss_dssp TTCEEEEEESCSC---CHHHHH---HTTS---------------C---------------------CEE-E-CCC---CC
T ss_pred CCceEEEEecccc---HHHHHH---HhcC---------------C---------------------Ccc-c-ccC---cc
Confidence 3467899999982 222211 1110 0 000 0 000 00
Q ss_pred CCcccEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHH--
Q 005980 406 LPVKRRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVI-- 483 (666)
Q Consensus 406 lp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~-- 483 (666)
.| ....++..... .+...++..+....
T Consensus 272 ~p---v~~~~~~~~~~------------------------------------------------~~~~~~l~~l~~~~~~ 300 (773)
T 2xau_A 272 YP---VELYYTPEFQR------------------------------------------------DYLDSAIRTVLQIHAT 300 (773)
T ss_dssp CC---EEEECCSSCCS------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred cc---eEEEEecCCch------------------------------------------------hHHHHHHHHHHHHHHh
Confidence 11 11112111110 01111222222221
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHh-----------CCceEEEEECCCCHHHHHHHHHHhc-----CCCCceEEEEeccc
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLK-----------KKVHCIRIDGGTPPASRQALVTEFQ-----EKDDVKAAVLSMKA 547 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~-----------~g~~~~~i~G~~~~~~R~~~i~~F~-----~~~~~~v~L~st~a 547 (666)
..+.++|||+.....++.+...|.. .++.+..++|+++..+|..+++.|. ++. ..+|++|.+
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~--~kVlVAT~i 378 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG--RKVVISTNI 378 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC--EEEEEECTH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc--eEEEEeCcH
Confidence 2578999999999999999998875 5889999999999999999999998 665 778999999
Q ss_pred cccccCcccCCEEEEecC------------------CCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 548 GGVGLTLTAASTVIFAEL------------------SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 548 ~~~GlnL~~a~~VI~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
+++|||++++++||.++. |.+...+.||.||++|. ++-.+|.|+++...
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999666 88999999999999998 34456777765444
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.81 E-value=6.9e-20 Score=203.46 Aligned_cols=275 Identities=19% Similarity=0.201 Sum_probs=176.6
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEec
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQ 252 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~ 252 (666)
++++|.+.+..+. .+..+++..+||+|||.++...+.. ...++||++|+ .|..|+.+.+.+.++... .....
T Consensus 218 ~~~~q~~i~~~L~-~~~~vlv~ApTGSGKT~a~~l~ll~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~v---g~~vG- 290 (666)
T 3o8b_A 218 VFTDNSSPPAVPQ-SFQVAHLHAPTGSGKSTKVPAAYAA--QGYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTG- 290 (666)
T ss_dssp SCCCCCSCCCCCS-SCEEEEEECCTTSCTTTHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHSCCC---EEECS-
T ss_pred cHHHHHHHHHHHH-cCCeEEEEeCCchhHHHHHHHHHHH--CCCeEEEEcchHHHHHHHHHHHHHHhCCCe---eEEEC-
Confidence 4556655544433 3556788889999999877655443 34589999999 788899998888876432 11111
Q ss_pred CCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcc--eE
Q 005980 253 LGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQ--YA 330 (666)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~--~~ 330 (666)
+. .......++|+|++.+... ..+...++++||+||||.+..........+...+...+ ..
T Consensus 291 --~~--------------~~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 291 --VR--------------TITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp --SC--------------EECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred --cE--------------eccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceE
Confidence 10 0122345889999998432 22333468999999998774332222333343333333 36
Q ss_pred EEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhehhhhhhhcCCccc
Q 005980 331 LLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRRLKKDVLAQLPVKR 410 (666)
Q Consensus 331 llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr~k~~v~~~lp~~~ 410 (666)
+++||||-.. +.. ..| .
T Consensus 354 il~SAT~~~~----------------i~~---------------------------------------------~~p--~ 370 (666)
T 3o8b_A 354 VLATATPPGS----------------VTV---------------------------------------------PHP--N 370 (666)
T ss_dssp EEEESSCTTC----------------CCC---------------------------------------------CCT--T
T ss_pred EEECCCCCcc----------------ccc---------------------------------------------CCc--c
Confidence 7889998320 000 000 0
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHHHHHHHHHHcCCEEE
Q 005980 411 RQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFL 490 (666)
Q Consensus 411 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~~~l~~~~~~g~Kvl 490 (666)
...+.+...... .+ + .....+ . ...+.++|
T Consensus 371 i~~v~~~~~~~i------------------------------~~---------~--~~~~~l-------~--~~~~~~vL 400 (666)
T 3o8b_A 371 IEEVALSNTGEI------------------------------PF---------Y--GKAIPI-------E--AIRGGRHL 400 (666)
T ss_dssp EEEEECBSCSSE------------------------------EE---------T--TEEECG-------G--GSSSSEEE
T ss_pred eEEEeecccchh------------------------------HH---------H--Hhhhhh-------h--hccCCcEE
Confidence 001111000000 00 0 000000 0 02588999
Q ss_pred EEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEE---------
Q 005980 491 IFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVI--------- 561 (666)
Q Consensus 491 VF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI--------- 561 (666)
||++.+..++.+.+.|...|+++..+||+++..+ |..+. ..+|++|+++++|||++ +++||
T Consensus 401 VFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~--~~VLVATdVaerGIDId-V~~VI~~Gl~~~~V 470 (666)
T 3o8b_A 401 IFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG--DVVVVATDALMTGYTGD-FDSVIDCNTCVTQT 470 (666)
T ss_dssp EECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS--CEEEEECTTHHHHCCCC-BSEEEECCEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC--CcEEEECChHHccCCCC-CcEEEecCcccccc
Confidence 9999999999999999999999999999999765 44444 47899999999999996 99888
Q ss_pred -Eec-----------CCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 562 -FAE-----------LSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 562 -~~d-----------~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
+|| .|-++..+.||+||++| |... . |.|+.++..
T Consensus 471 iNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 471 VDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp EECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred cccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 566 78888999999999999 6443 3 777776543
No 56
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.80 E-value=4.4e-19 Score=198.68 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=102.7
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..++++.+......+.++||||..+...+.|...|...|+++..++|.....+|..+...|+.+ .++++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g----~VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG----AVTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT----CEEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC----eEEEeCC
Confidence 345689999999988767899999999999999999999999999999999998877776555555544 2689999
Q ss_pred ccccccCcc--------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 547 AGGVGLTLT--------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 547 a~~~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
++|.|+|++ +..+||.+|.|-++..+.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 778999999999999999999999999976543
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.80 E-value=2.6e-18 Score=192.08 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=102.9
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..++++.+......|.++||||..+...+.|...|.+.|+++..++|.....++.-+.+.|+.+. ++++|+
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGG----VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTC----EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 3456999999999887778999999999999999999999999999999999987666666667777653 688999
Q ss_pred ccccccCcccC----------------------------------------------------CEEEEecCCCCcchhhh
Q 005980 547 AGGVGLTLTAA----------------------------------------------------STVIFAELSWTPGDLIQ 574 (666)
Q Consensus 547 a~~~GlnL~~a----------------------------------------------------~~VI~~d~~wnp~~~~Q 574 (666)
.+|.|+|+... .+||.+|.|-++..+.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999853 49999999999999999
Q ss_pred hhhhhhccCCCCcE
Q 005980 575 AEDRAHRIGQVSSV 588 (666)
Q Consensus 575 a~gR~~R~Gq~~~V 588 (666)
++||++|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999976543
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.78 E-value=7.4e-18 Score=207.08 Aligned_cols=326 Identities=16% Similarity=0.136 Sum_probs=193.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC-----------CCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR-----------DVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~-----------~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
..|.|.|..++..++..+.+++++.+||+|||++|...+. .+. +..++|+|+|. +|..|-.+++.+.
T Consensus 78 ~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~ 157 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKR 157 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3688999999999998888999999999999999864443 331 24579999999 8888888888877
Q ss_pred hcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH----hcCCccEEEEcCccccCChhH
Q 005980 239 LNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL----MSSNFKIVIADESHFLKNAQA 314 (666)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l----~~~~~~~vIiDEaH~~kn~~s 314 (666)
++--...+....+ +.... + ......+|+|+|++.+....... .-.+.++||+||+|.+.+.-.
T Consensus 158 ~~~~gi~V~~~tG---d~~~~---------~-~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 158 LATYGITVAELTG---DHQLC---------K-EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HTTTTCCEEECCS---SCSSC---------C-TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTH
T ss_pred HhhCCCEEEEEEC---CCCCC---------c-cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccH
Confidence 6422222222211 11110 0 11124568999999875432110 113578999999999865311
Q ss_pred HHHHHh-------hhhhhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHH
Q 005980 315 KRTAAT-------LPIIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHN 387 (666)
Q Consensus 315 ~~~~~~-------~~l~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 387 (666)
.....+ ........++++||||- .++.|+... |.... ..
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~w---L~~~~----~~------------------------- 270 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATF---LRVDP----AK------------------------- 270 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHH---TTCCH----HH-------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHH---hCCCC----CC-------------------------
Confidence 111111 11122446789999995 345554322 21110 00
Q ss_pred HhhhhhhhhehhhhhhhcCCcccEEE-EEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcC
Q 005980 388 LMKATVMIRRLKKDVLAQLPVKRRQQ-VFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTD 466 (666)
Q Consensus 388 ll~~~~~lrr~k~~v~~~lp~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (666)
..+.+ .. ..-|..-.+. +.+...... ..+..+ +
T Consensus 271 ---~~~~~---~~---~~RPvpL~~~~~~~~~~~~~-~~~~~~-------------------------------~----- 304 (1724)
T 4f92_B 271 ---GLFYF---DN---SFRPVPLEQTYVGITEKKAI-KRFQIM-------------------------------N----- 304 (1724)
T ss_dssp ---HEEEC---CG---GGCSSCEEEECCEECCCCHH-HHHHHH-------------------------------H-----
T ss_pred ---CeEEE---CC---CCccCccEEEEeccCCcchh-hhhHHH-------------------------------H-----
Confidence 00000 00 0011111111 111111100 000000 0
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHH----hC---------------------------------
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFL----KK--------------------------------- 509 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~----~~--------------------------------- 509 (666)
..+.+.+.+. ..++++|||++.+.....+...|. ..
T Consensus 305 ------~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 305 ------EIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp ------HHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred ------HHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 0011111111 245689999987654443333332 11
Q ss_pred CceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE----ecCC------CCcchhhhhhhhh
Q 005980 510 KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AELS------WTPGDLIQAEDRA 579 (666)
Q Consensus 510 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d~~------wnp~~~~Qa~gR~ 579 (666)
...+...||+++..+|..+-+.|++|. ..+|++|.+++.||||++.++||. +++. -++..+.|++|||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~--i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKH--IQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA 455 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTC--CCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTB
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCC--CeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhc
Confidence 123678899999999999999999987 668889999999999998887773 5543 4788999999999
Q ss_pred hccCCCCcEEEEEEEeCCCH
Q 005980 580 HRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 580 ~R~Gq~~~V~v~~lv~~~ti 599 (666)
+|.|....-.++.+...+..
T Consensus 456 GR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTC
T ss_pred cCCCCCCccEEEEEecchhH
Confidence 99998766666666666543
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=1.3e-18 Score=195.61 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=93.8
Q ss_pred EEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEEecC---
Q 005980 489 FLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAEL--- 565 (666)
Q Consensus 489 vlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~--- 565 (666)
.+||+.....++.+...|...|+.+..+||+++..+|.++.+.|+++++...+|++|+++++|||+ .+++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 478888899999999999999999999999999999999999999833336789999999999999 9999999998
Q ss_pred -----------CCCcchhhhhhhhhhccCCC-CcEEEEEEEeC
Q 005980 566 -----------SWTPGDLIQAEDRAHRIGQV-SSVNVYYLLAN 596 (666)
Q Consensus 566 -----------~wnp~~~~Qa~gR~~R~Gq~-~~V~v~~lv~~ 596 (666)
|++...+.|++||++|.|.. ..-.+|.+..+
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999977 34556655433
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.78 E-value=6.6e-19 Score=163.76 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=118.8
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
...+.|+..|.+++.. ..+.++||||++...++.+...|...|+.+..++|+++..+|..++++|+++. ..+|++|
T Consensus 17 ~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T 92 (163)
T 2hjv_A 17 VREENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVAT 92 (163)
T ss_dssp CCGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEC
T ss_pred CChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEC
Confidence 3456799999999987 47889999999999999999999999999999999999999999999999987 5578899
Q ss_pred cccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 005980 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK 610 (666)
Q Consensus 546 ~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~K 610 (666)
+++++|+|++.+++||++|+||++..+.|++||++|.|+...+ +.|+... |...+..+.+.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~~ 153 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEEY 153 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHHH
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987554 4455543 44555555443
No 61
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=4.2e-18 Score=190.24 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=104.4
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
+...|..++++.+......|.++||||..+...+.|...|.+.|+++..++|.....+|..+.++|+.+. ++++|+
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA----VTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTC----EEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 4457999999999887678999999999999999999999999999999999988777777777887663 789999
Q ss_pred ccccccCcccC-------------------------------------CEEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 547 AGGVGLTLTAA-------------------------------------STVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 547 a~~~GlnL~~a-------------------------------------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
.+|.|+|+... .+||.++.|-++..+.|++||++|.|..-..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 5999999999999999999999999976543
No 62
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=1.7e-18 Score=162.43 Aligned_cols=136 Identities=16% Similarity=0.272 Sum_probs=116.8
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
..+.|+..|.+++... .+.|+||||++...++.+...|...|+++..++|+++..+|..+++.|+++. ..+|++|+
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 4567999999998873 6789999999999999999999999999999999999999999999999887 55788999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
++++|+|++.+++||++|+|||+..+.|++||++|.|+...+ +.|+... -|..++..+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~-~~~~~~~~l~~ 149 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQD 149 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH-HHHHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcCh-hHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654 3444432 24444444443
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=1.7e-17 Score=203.86 Aligned_cols=323 Identities=14% Similarity=0.119 Sum_probs=193.5
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHH-Hhc--CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVA-TCF--RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVV 248 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~-~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~ 248 (666)
.+.|.|.+++..++..+.+++++.+||+|||++|...+ ..+ ...+++++|+|. +|..|-.+++.+.++-. ..+.+
T Consensus 926 ~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~-~g~~V 1004 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR-LNKKV 1004 (1724)
T ss_dssp BCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTT-SCCCE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchh-cCCEE
Confidence 57899999999998878889999999999999885444 333 235689999999 88888777776655321 11112
Q ss_pred EEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhc----CCccEEEEcCccccCChhHHHHHHhhhh-
Q 005980 249 VLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMS----SNFKIVIADESHFLKNAQAKRTAATLPI- 323 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~----~~~~~vIiDEaH~~kn~~s~~~~~~~~l- 323 (666)
... .|...... .......++|+|++.+......... .+.++||+||+|.+.+........+...
T Consensus 1005 ~~l--tGd~~~~~---------~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl 1073 (1724)
T 4f92_B 1005 VLL--TGETSTDL---------KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRM 1073 (1724)
T ss_dssp EEC--CSCHHHHH---------HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHH
T ss_pred EEE--ECCCCcch---------hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHH
Confidence 211 11111000 0011345889999987544332111 2578999999999976433222222211
Q ss_pred ------hhhcceEEEeeccCCCCChHHHHHHHHHhCCCCCCCHHHHhhhhhcCcccccccCCCCHHHHHHHhhhhhhhhe
Q 005980 324 ------IKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGIYQGASNHEELHNLMKATVMIRR 397 (666)
Q Consensus 324 ------~~~~~~~llLTgTP~~n~~~el~~~l~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~lrr 397 (666)
.....+.++||||- .++.|+...|..-..+.+ .|
T Consensus 1074 ~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~~----~~---------------------------------- 1113 (1724)
T 4f92_B 1074 RYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATSTF----NF---------------------------------- 1113 (1724)
T ss_dssp HHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTEE----EC----------------------------------
T ss_pred HHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCeE----Ee----------------------------------
Confidence 12346789999996 345555443321100000 00
Q ss_pred hhhhhhhcCCcc-cEEEEEecCCHHHHHHHHHHHHHHHHHHhHHHhcCCHHHHhhchhhHHHHHHhhhcCCccccHHHHH
Q 005980 398 LKKDVLAQLPVK-RRQQVFLDVAEKDMRQIYALFRELEVVKGKIKACKSEEEVQSLKFTEKNLINKIYTDSAEAKIPAVL 476 (666)
Q Consensus 398 ~k~~v~~~lp~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kl~~l~ 476 (666)
..+ .-|.. ..+....+........ . .....+.
T Consensus 1114 -~~~---~RPvpL~~~i~~~~~~~~~~~~-~------------------------------------------~~~~~~~ 1146 (1724)
T 4f92_B 1114 -HPN---VRPVPLELHIQGFNISHTQTRL-L------------------------------------------SMAKPVY 1146 (1724)
T ss_dssp -CGG---GCSSCEEEEEEEECCCSHHHHH-H------------------------------------------TTHHHHH
T ss_pred -CCC---CCCCCeEEEEEeccCCCchhhh-h------------------------------------------hhcchHH
Confidence 000 01111 1122222222111000 0 0011122
Q ss_pred HHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----------------------------------CCceEEEEECCCCH
Q 005980 477 DYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----------------------------------KKVHCIRIDGGTPP 522 (666)
Q Consensus 477 ~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~i~G~~~~ 522 (666)
..+... ..++++|||+..+.....+...|.. ....+...||+++.
T Consensus 1147 ~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~ 1225 (1724)
T 4f92_B 1147 HAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSP 1225 (1724)
T ss_dssp HHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCH
T ss_pred HHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCH
Confidence 222222 4567888888887765544433311 01246789999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeccccccccCcccCCEEEE----ecC------CCCcchhhhhhhhhhccCCCCcEEEEE
Q 005980 523 ASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIF----AEL------SWTPGDLIQAEDRAHRIGQVSSVNVYY 592 (666)
Q Consensus 523 ~~R~~~i~~F~~~~~~~v~L~st~a~~~GlnL~~a~~VI~----~d~------~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 592 (666)
.+|..+.+.|.+|. .-+|++|.+++.|+|+++-.+||. +|. +.++..+.|++||++|.|....-.++.
T Consensus 1226 ~~R~~VE~lF~~G~--i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avl 1303 (1724)
T 4f92_B 1226 MERRLVEQLFSSGA--IQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVI 1303 (1724)
T ss_dssp HHHHHHHHHHHHTS--BCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHHHHHHHCCC--CeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEE
Confidence 99999999999988 667888999999999998666662 322 357889999999999999876666665
Q ss_pred EEeCC
Q 005980 593 LLAND 597 (666)
Q Consensus 593 lv~~~ 597 (666)
++...
T Consensus 1304 l~~~~ 1308 (1724)
T 4f92_B 1304 MCQGS 1308 (1724)
T ss_dssp EEEGG
T ss_pred Eecch
Confidence 55543
No 64
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=165.90 Aligned_cols=126 Identities=16% Similarity=0.303 Sum_probs=98.5
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
..+.|+..|.+++... ..+.|+||||+....++.+...|...|+.+..++|+++..+|..+++.|+++. ..+|++|+
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 104 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 104 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEEC
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEcC
Confidence 4567999999998874 35789999999999999999999999999999999999999999999999887 45788999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++++|+|++.+++||++|+|||+..+.||+||++|.|+... ++.|+.+.
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 99999999999999999999999999999999999997654 45555543
No 65
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.75 E-value=1.5e-16 Score=180.12 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccccc
Q 005980 472 IPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVG 551 (666)
Q Consensus 472 l~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~G 551 (666)
...+++.|......+.++||||....+++.|...|...|+++..+||+++..+|.+++++|+.+. ..+|++|+++++|
T Consensus 425 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l~~G 502 (664)
T 1c4o_A 425 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLLREG 502 (664)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCCCTT
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChhhcC
Confidence 34455566666678999999999999999999999999999999999999999999999999887 5688999999999
Q ss_pred cCcccCCEEEEecC-----CCCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 552 LTLTAASTVIFAEL-----SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 552 lnL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
+|++.++.||++|. ++++..+.|++||++|.|.. .++.++...+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~~ 551 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRVS 551 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCC
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCCC
Confidence 99999999999998 89999999999999998632 3455665554
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.74 E-value=1.7e-16 Score=173.75 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=101.9
Q ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccc
Q 005980 468 AEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKA 547 (666)
Q Consensus 468 ~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a 547 (666)
...|..++++.+......|.++||||......+.|...|.+.|+++..++|.....+|.-+...|+.+. ++++|+.
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~----VtVATdm 531 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGM----VTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTC----EEEEETT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCe----EEEEcch
Confidence 346999999999988778999999999999999999999999999999999966555555556666553 7999999
Q ss_pred cccccCcc--------cCCEEEEecCCCCcchhhhhhhhhhccCCCCcE
Q 005980 548 GGVGLTLT--------AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 588 (666)
Q Consensus 548 ~~~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 588 (666)
+|.|+|++ +..+||.+++|-++..+.|++||++|.|..-..
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 99999997 667999999999999999999999999977553
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.74 E-value=8.8e-18 Score=156.49 Aligned_cols=124 Identities=18% Similarity=0.287 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.|+..+.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|..+++.|+++. ..+|++|++++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~ 91 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTDLLA 91 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEGGGT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcChhh
Confidence 3899999988873 6789999999999999999999999999999999999999999999999887 45788899999
Q ss_pred cccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCH
Q 005980 550 VGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTV 599 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ti 599 (666)
+|+|++.+++||++|+||++..+.|++||++|.|+... ++.++.++..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999999999999999999997654 4566676644
No 68
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=163.31 Aligned_cols=124 Identities=24% Similarity=0.361 Sum_probs=107.9
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecc
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMK 546 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 546 (666)
....|+..|.+++.. .+.|+||||+....++.+...|...|+.+..++|+++..+|.++++.|+++. ..+|++|+
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 112 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVATD 112 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEECH
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEcC
Confidence 456788888888765 4679999999999999999999999999999999999999999999999887 45788999
Q ss_pred ccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 547 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 547 a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
++++|+|++.+++||++|+||++..+.||+||++|.|+...+ +.|+...
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999987644 4455543
No 69
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=153.79 Aligned_cols=123 Identities=11% Similarity=0.212 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG 549 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~ 549 (666)
.|+..|.+++... .+.|+||||++..+++.+...|...|+.+..++|+++..+|..+++.|+++. ..+|++|++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEEEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEecchh
Confidence 3888888887763 6789999999999999999999999999999999999999999999999887 55788999999
Q ss_pred cccCcccCCEEEEecCC------CCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 550 VGLTLTAASTVIFAELS------WTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 550 ~GlnL~~a~~VI~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
+|+|++.+++||++|+| +++..+.||+||++|.|+. -.++.|+..+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 99999999999999999 6778999999999999855 35566776654
No 70
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=4.1e-17 Score=158.42 Aligned_cols=136 Identities=13% Similarity=0.220 Sum_probs=116.9
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
...+.|+..+.+++.. ..+.++||||.....++.+...|...|+.+..+||+++..+|..+++.|+++. ..+|++|
T Consensus 13 ~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT 88 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVAT 88 (212)
T ss_dssp CCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEEC
T ss_pred CCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEec
Confidence 3457899999999986 57899999999999999999999999999999999999999999999999987 5678899
Q ss_pred cccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 005980 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRS 609 (666)
Q Consensus 546 ~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~tiee~i~~~~~~ 609 (666)
+++++|+|++.+++||++++||++..+.||+||++|.|+.. .++.|+... |...+..+.+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~ 148 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALER 148 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999764 445566554 4444444443
No 71
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.55 E-value=6.6e-19 Score=165.01 Aligned_cols=118 Identities=11% Similarity=0.239 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc
Q 005980 469 EAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG 548 (666)
Q Consensus 469 ~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~ 548 (666)
+.|+..|.+++.. ..+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++. ..+|++|+++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVATDVA 90 (170)
Confidence 5688888888876 46789999999999999999999999999999999999999999999999887 5688999999
Q ss_pred ccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEE
Q 005980 549 GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 549 ~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 590 (666)
++|+|++.+++||++|+||++..+.|++||++|.|+...+.+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 999999999999999999999999999999999998766543
No 72
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.67 E-value=2.7e-15 Score=169.69 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccccccc
Q 005980 473 PAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGL 552 (666)
Q Consensus 473 ~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gl 552 (666)
..+++.|......+.++||||.....++.|...|...|+++..+||.++..+|.+++++|+.+. ..+|++|+++++|+
T Consensus 432 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 432 DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCCSTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchhhCCc
Confidence 3455556666667899999999999999999999999999999999999999999999999887 56889999999999
Q ss_pred CcccCCEEEEecC-----CCCcchhhhhhhhhhccCCCCcEEEEEEEeCCC
Q 005980 553 TLTAASTVIFAEL-----SWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDT 598 (666)
Q Consensus 553 nL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~t 598 (666)
|++.+++||++|. ++++..+.|++||++|.+ +-.++.++...+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 9999999999998 899999999999999973 234555666654
No 73
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=9e-16 Score=156.17 Aligned_cols=126 Identities=13% Similarity=0.238 Sum_probs=109.6
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM 545 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st 545 (666)
...+.|+..+.+++... .+.++||||.....++.+...|...|+.+..+||+++..+|..+++.|+++. ..+|++|
T Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT 85 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVAT 85 (300)
T ss_dssp CCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEEC
T ss_pred CCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEe
Confidence 34567999999999874 6899999999999999999999999999999999999999999999999987 6678999
Q ss_pred cccccccCcccCCEEEEecCCCCcchhhhhhhhhhccCCCCcEEEEEEEeCC
Q 005980 546 KAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLAND 597 (666)
Q Consensus 546 ~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~lv~~~ 597 (666)
+++++|+|++.+++||++++||++..+.|++||++|.|+.. .+|.|+...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 99999999999999999999999999999999999999764 445566554
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=152.49 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=96.4
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-------CCCCcEEEEeCC-cchHH-HHHHHHHHhcC
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-------RDVWPVLILTPS-SLRLH-WAAMIQQWLNI 241 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-------~~~~~~LIv~P~-sl~~q-W~~e~~~~~~~ 241 (666)
...|+|||.+++..+++ +.++++..+||+|||++++..+... ....++||+||+ .++.| |.+++.++.+.
T Consensus 31 ~~~l~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCchHHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999886 5689999999999999998777643 125789999999 78899 99999998753
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--------HhcCCccEEEEcCccccCChh
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--------LMSSNFKIVIADESHFLKNAQ 313 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--------l~~~~~~~vIiDEaH~~kn~~ 313 (666)
. ..+.... .+....... ........|+|+||+.+...... +...++++||+||||++....
T Consensus 110 ~-~~v~~~~--g~~~~~~~~--------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 110 W-YRVIGLS--GDTQLKISF--------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 178 (216)
T ss_dssp T-SCEEECC--C---CCCCH--------HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------
T ss_pred C-ceEEEEe--CCcccchhH--------HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC
Confidence 1 1222211 111100000 00001245889999999876543 223478999999999996543
Q ss_pred HHHH--HHhhhh-hh------------hcceEEEeecc
Q 005980 314 AKRT--AATLPI-IK------------KAQYALLLSGT 336 (666)
Q Consensus 314 s~~~--~~~~~l-~~------------~~~~~llLTgT 336 (666)
.... ..+... .. ...++++||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 179 VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 111111 00 24688999998
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=4.5e-16 Score=152.16 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C---CCCcEEEEeCC-cchHHHHHHHHHHhcCC-CCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R---DVWPVLILTPS-SLRLHWAAMIQQWLNIP-PSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~-~~~i 246 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+... . ...++||+||+ .|..||.+++.++.... ...+
T Consensus 36 ~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 489999999999887 5689999999999999887666543 2 13479999999 89999999999997432 2233
Q ss_pred EEEEecCCCCCc-cceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCCh-h-HHHHHHhh
Q 005980 247 VVVLSQLGGSNR-SGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNA-Q-AKRTAATL 321 (666)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~-~-s~~~~~~~ 321 (666)
.... ++... ...... ......++|+|++.+...... +...++++||+||||++.+. + ......+.
T Consensus 115 ~~~~---g~~~~~~~~~~~-------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 115 AVFF---GGLSIKKDEEVL-------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp EEES---CCSCHHHHHHHH-------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred EEEe---CCCChHHHHHHH-------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 2221 11111 000000 001235889999998765442 22346899999999998652 2 22333344
Q ss_pred hhhhhcceEEEeeccCC
Q 005980 322 PIIKKAQYALLLSGTPA 338 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP~ 338 (666)
.......+++++||||-
T Consensus 185 ~~~~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLS 201 (220)
T ss_dssp HTSCSSSEEEEEESCCC
T ss_pred HhCCCcCeEEEEEeecC
Confidence 43334678899999984
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=153.16 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=104.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc--------CCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF--------RDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~--------~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+... ....++||+||+ .|..||.+++.++.....
T Consensus 47 ~~~~~Q~~~i~~~~~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 125 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ-GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD 125 (236)
T ss_dssp BCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHhC-CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 689999999999886 6689999999999999876544322 235579999999 899999999999874322
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChh-HHHHHH
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQ-AKRTAA 319 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~-s~~~~~ 319 (666)
..+.... ++...... ........|+|+|++.+...... +...++++||+||||++.+.+ ......
T Consensus 126 ~~~~~~~---g~~~~~~~--------~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 194 (236)
T 2pl3_A 126 FSAGLII---GGKDLKHE--------AERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194 (236)
T ss_dssp CCEEEEC---CC--CHHH--------HHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHH
T ss_pred eeEEEEE---CCCCHHHH--------HHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHH
Confidence 2332222 11111000 00012356899999999776543 223478899999999987643 233344
Q ss_pred hhhhhhhcceEEEeeccC
Q 005980 320 TLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP 337 (666)
+...+....+++++|||+
T Consensus 195 i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 195 VIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp HHHTSCTTSEEEEEESSC
T ss_pred HHHhCCCCCeEEEEEeeC
Confidence 444444567789999998
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.64 E-value=1.5e-15 Score=148.93 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHH-HHHHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQA-IAVATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~a-la~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++..++. +..+++..+||+|||+++ +.++..+. ...++||+||+ .|..||.+++.++.......+.
T Consensus 36 ~~~~~Q~~~i~~~~~-~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCcHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEE
Confidence 689999999998886 568999999999999984 44444442 34579999999 8899999999998753333332
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~ 324 (666)
...+ +..... .........++|+|++.+...... +...++++||+||||++.+.+. .....+...+
T Consensus 115 ~~~g---~~~~~~--------~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 115 ACIG---GTSFVE--------DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp EECC---------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred EEeC---CcchHH--------HHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 2221 111100 001112256899999998765432 2234689999999999865432 2233344433
Q ss_pred hhcceEEEeeccC
Q 005980 325 KKAQYALLLSGTP 337 (666)
Q Consensus 325 ~~~~~~llLTgTP 337 (666)
....+++++|||+
T Consensus 184 ~~~~~~i~lSAT~ 196 (224)
T 1qde_A 184 PPTTQVVLLSATM 196 (224)
T ss_dssp CTTCEEEEEESSC
T ss_pred CccCeEEEEEeec
Confidence 3567789999998
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=8.1e-16 Score=148.75 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=102.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC------CCCcEEEEeCC-cchHHHHHHHHHHhcCCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR------DVWPVLILTPS-SLRLHWAAMIQQWLNIPPS 244 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~------~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~ 244 (666)
.|+|||.+++..+++ +..+++..+||+|||++++..+. .+. ...++||+||+ .+..||.+++.++++. .
T Consensus 23 ~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALE-GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--L 99 (207)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--S
T ss_pred CCCHHHHHHHHHHcC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--c
Confidence 689999999999887 66899999999999998665444 332 34579999999 8999999999999742 2
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhh
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATL 321 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~ 321 (666)
.+.... ++...... .........++|+|++.+...... +...++++||+||||++.+.+. .....+.
T Consensus 100 ~~~~~~---~~~~~~~~-------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~ 169 (207)
T 2gxq_A 100 KVVAVY---GGTGYGKQ-------KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALL 169 (207)
T ss_dssp CEEEEC---SSSCSHHH-------HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHH
T ss_pred eEEEEE---CCCChHHH-------HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHH
Confidence 222221 11111000 000011345899999998766543 2234689999999999865432 2333333
Q ss_pred hhhhhcceEEEeeccC
Q 005980 322 PIIKKAQYALLLSGTP 337 (666)
Q Consensus 322 ~l~~~~~~~llLTgTP 337 (666)
.......+++++||||
T Consensus 170 ~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 170 SATPPSRQTLLFSATL 185 (207)
T ss_dssp HTSCTTSEEEEECSSC
T ss_pred HhCCccCeEEEEEEec
Confidence 3333467889999998
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.63 E-value=2.2e-15 Score=147.21 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=102.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC---CCCcEEEEeCC-cchHHHHHHHHHHhcCC----C
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR---DVWPVLILTPS-SLRLHWAAMIQQWLNIP----P 243 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~----~ 243 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+. .+. ...++||+||+ .|..||.+++.++.... .
T Consensus 26 ~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 26 KPTEIQERIIPGALR-GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp SCCHHHHHHHHHHHH-TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 589999999999887 56899999999999998655443 332 24579999999 89999999999987532 1
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHh
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAAT 320 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~ 320 (666)
..+.... ++..... ..........|+|+|++.+...... +...++++||+||||++.+.+. .....+
T Consensus 105 ~~~~~~~---g~~~~~~-------~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 174 (219)
T 1q0u_A 105 IVARCLI---GGTDKQK-------ALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQI 174 (219)
T ss_dssp CCEEEEC---CCSHHHH-------TTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred eEEEEEe---CCCCHHH-------HHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHH
Confidence 1222221 1211100 0111122456999999998865432 2223678999999999865432 223333
Q ss_pred hhhhhhcceEEEeeccC
Q 005980 321 LPIIKKAQYALLLSGTP 337 (666)
Q Consensus 321 ~~l~~~~~~~llLTgTP 337 (666)
...+....+++++|||+
T Consensus 175 ~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 175 AARMPKDLQMLVFSATI 191 (219)
T ss_dssp HHTSCTTCEEEEEESCC
T ss_pred HHhCCcccEEEEEecCC
Confidence 33333457889999998
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=3.6e-15 Score=144.10 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=103.1
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC---CCCcEEEEeCC-cchHHHHHHHHHHhcCC-CCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR---DVWPVLILTPS-SLRLHWAAMIQQWLNIP-PSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~-~~~i 246 (666)
.|+|||.+++..++. +.++++..+||+|||++++..+.. +. ...++||+||+ .|..||.+++.++.... ...+
T Consensus 25 ~~~~~Q~~~i~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 25 KPSPIQEESIPIALS-GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCHHHHHHHHHHcc-CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 689999999998886 568999999999999987754443 22 23479999999 88999999999987422 2222
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPI 323 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l 323 (666)
.... ++...... .........++|+|++.+...... +...++++||+||||++.+.+. .....+...
T Consensus 104 ~~~~---g~~~~~~~-------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 104 MATT---GGTNLRDD-------IMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp EEEC---SSSCHHHH-------HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred EEEe---CCccHHHH-------HHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 2221 11111000 001112456899999998765442 1223689999999999876443 223333333
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
+.+..+++++|||+
T Consensus 174 ~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 174 LPKNRQILLYSATF 187 (206)
T ss_dssp SCTTCEEEEEESCC
T ss_pred CCccceEEEEEeeC
Confidence 33467899999998
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.59 E-value=5.5e-15 Score=146.23 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=101.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC---CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR---DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+.. +. ...++||++|+ .|..||.+++.++.......+.
T Consensus 52 ~~~~~Q~~ai~~i~~-~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK-GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEE
Confidence 589999999999886 568999999999999986654443 32 34589999999 8999999999998753322332
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-HHHHHhhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA-KRTAATLPII 324 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l~ 324 (666)
... ++...... ..........++|+|++.+...... +...++++||+||||++.+.+. .....+...+
T Consensus 131 ~~~---g~~~~~~~------~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 201 (237)
T 3bor_A 131 ACI---GGTNVRNE------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL 201 (237)
T ss_dssp EEC---C-------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS
T ss_pred EEE---CCCchHHH------HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhC
Confidence 222 11111000 0000111256899999998765432 2234689999999998854322 2233333333
Q ss_pred hhcceEEEeeccC
Q 005980 325 KKAQYALLLSGTP 337 (666)
Q Consensus 325 ~~~~~~llLTgTP 337 (666)
....+++++|||+
T Consensus 202 ~~~~~~i~~SAT~ 214 (237)
T 3bor_A 202 NTSIQVVLLSATM 214 (237)
T ss_dssp CTTCEEEEECSSC
T ss_pred CCCCeEEEEEEec
Confidence 3567889999998
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.59 E-value=6.2e-15 Score=145.10 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=102.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHH-HHHhcC---CCCcEEEEeCC-cchHHHHHHHHHHhcC-CCCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIA-VATCFR---DVWPVLILTPS-SLRLHWAAMIQQWLNI-PPSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala-~~~~~~---~~~~~LIv~P~-sl~~qW~~e~~~~~~~-~~~~i 246 (666)
.|+|||.+++..++. |.++++..+||+|||++++. ++..+. ...++||+||+ .|..||.+++.++... +...+
T Consensus 46 ~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 124 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 124 (230)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceE
Confidence 589999999998876 67899999999999998543 444432 24589999999 8999999999998642 12233
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh--HHHHHHhhh
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ--AKRTAATLP 322 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~ 322 (666)
.... ++...... ........|+|+|++.+...... +...++++||+||||++.+.+ ......+..
T Consensus 125 ~~~~---g~~~~~~~--------~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 125 HVFI---GGTPLSQD--------KTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp EEEC---TTSCHHHH--------HHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHH
T ss_pred EEEe---CCCCHHHH--------HHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHH
Confidence 2221 11111000 00012356899999999865432 222367899999999985543 233344444
Q ss_pred hhhhcceEEEeeccC
Q 005980 323 IIKKAQYALLLSGTP 337 (666)
Q Consensus 323 l~~~~~~~llLTgTP 337 (666)
.+....+++++|||+
T Consensus 194 ~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 194 SLPASKQMLAVSATY 208 (230)
T ss_dssp HSCSSCEEEEEESCC
T ss_pred hCCCCCeEEEEEecc
Confidence 443467789999997
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=146.88 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=102.8
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-c---CCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-F---RDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~---~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
.|+|||.+++..++. +..+++..+||+|||++++..+.. + ....++||++|+ .|..||.+++.++.......+.
T Consensus 65 ~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~ 143 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ-GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSA 143 (249)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 689999999998886 578999999999999987654432 2 224569999999 8899999999998642222222
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCChhH-HHHHHhhhh
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKNAQA-KRTAATLPI 323 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l 323 (666)
.+. ++...... .........|+|+|++.+...... +...++++||+||||++.+.+. .....+...
T Consensus 144 ~~~---g~~~~~~~-------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 144 VIV---GGIDSMSQ-------SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp EEC---TTSCHHHH-------HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred EEE---CCCChHHH-------HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 222 11111000 000112346899999999876543 2234688999999998865432 223333333
Q ss_pred hhhcceEEEeeccC
Q 005980 324 IKKAQYALLLSGTP 337 (666)
Q Consensus 324 ~~~~~~~llLTgTP 337 (666)
+....+++++|||+
T Consensus 214 ~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 214 IPRDRKTFLFSATM 227 (249)
T ss_dssp SCSSSEEEEEESSC
T ss_pred CCCCCeEEEEeccC
Confidence 33567889999998
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.56 E-value=9.7e-15 Score=145.94 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=101.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C------------CCCcEEEEeCC-cchHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R------------DVWPVLILTPS-SLRLHWAAMIQQ 237 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~------------~~~~~LIv~P~-sl~~qW~~e~~~ 237 (666)
..|+|||.+++..++. +..+++..+||+|||+.++..+... . ...++||+||+ .|..||.+++.+
T Consensus 44 ~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE-HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH
Confidence 3699999999999887 5688999999999999876544422 1 12479999999 899999999999
Q ss_pred HhcCCCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChhH-
Q 005980 238 WLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQA- 314 (666)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s- 314 (666)
+.......+..+. ++...... .........|+|+|++.+...... +...++++||+||||++.+.+.
T Consensus 123 ~~~~~~~~~~~~~---g~~~~~~~-------~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~ 192 (253)
T 1wrb_A 123 FSLNTPLRSCVVY---GGADTHSQ-------IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFE 192 (253)
T ss_dssp HHTTSSCCEEEEC---SSSCSHHH-------HHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCH
T ss_pred HhccCCceEEEEE---CCCCHHHH-------HHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchH
Confidence 8753333332222 11111100 000112356899999999866542 2224678999999999865432
Q ss_pred HHHHHhhhh--hhh--cceEEEeeccC
Q 005980 315 KRTAATLPI--IKK--AQYALLLSGTP 337 (666)
Q Consensus 315 ~~~~~~~~l--~~~--~~~~llLTgTP 337 (666)
.....+... ... ..+++++||||
T Consensus 193 ~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 193 PQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 222222221 111 45789999998
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=141.16 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=100.4
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcC----CCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFR----DVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEI 246 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~----~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i 246 (666)
.|+|+|.+++..++. +..+++..+||+|||+.++..+. .+. ...++|||+|+ .|..||.+++.+++......+
T Consensus 51 ~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 129 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRI 129 (245)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 589999999998887 56799999999999998654443 332 23469999999 899999999999875322222
Q ss_pred EEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH----HhcCCccEEEEcCccccCChh----HHHHH
Q 005980 247 VVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI----LMSSNFKIVIADESHFLKNAQ----AKRTA 318 (666)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~~----s~~~~ 318 (666)
...... ..... ...........|+|+|++.+...... +.-.++++||+||||++...+ .....
T Consensus 130 ~~~~~~--~~~~~-------~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 130 HMIHKA--AVAAK-------KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp ECCCHH--HHHHT-------TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred EEEecC--ccHHH-------HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 221110 00000 00111223456899999999766543 222368899999999986532 11222
Q ss_pred Hhh-hhhhhcceEEEeeccC
Q 005980 319 ATL-PIIKKAQYALLLSGTP 337 (666)
Q Consensus 319 ~~~-~l~~~~~~~llLTgTP 337 (666)
.+. .+.....+++++|||+
T Consensus 201 ~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 201 SIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHCCCTTCEEEEEESSC
T ss_pred HHHHhcCCCCcEEEEEeccC
Confidence 221 1112356789999998
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=140.67 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=100.8
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-cC---------CCCcEEEEeCC-cchHHHHHHHHHHhcC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-FR---------DVWPVLILTPS-SLRLHWAAMIQQWLNI 241 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~~---------~~~~~LIv~P~-sl~~qW~~e~~~~~~~ 241 (666)
.|+|+|.+++..+++ |..+++..+||+|||+.++..+.. +. ....+||++|+ .|..||.+++.++...
T Consensus 42 ~~~~~Q~~~i~~~~~-~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ-GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK 120 (228)
T ss_dssp SCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc
Confidence 689999999998876 678999999999999987654332 21 34569999999 7999999999998632
Q ss_pred CCCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh-HHHHH
Q 005980 242 PPSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ-AKRTA 318 (666)
Q Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~-s~~~~ 318 (666)
...+..+.+ +..... ..........++|+|++.+...... +.-.++++||+||||++.+.+ .....
T Consensus 121 -~~~~~~~~~---~~~~~~-------~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 189 (228)
T 3iuy_A 121 -GLKSICIYG---GRNRNG-------QIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIR 189 (228)
T ss_dssp -TCCEEEECC----------------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHH
T ss_pred -CceEEEEEC---CCChHH-------HHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHH
Confidence 222222221 111100 0000112346899999998765432 222468999999999986543 22333
Q ss_pred HhhhhhhhcceEEEeeccC
Q 005980 319 ATLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 319 ~~~~l~~~~~~~llLTgTP 337 (666)
.+...+....+.+++|||.
T Consensus 190 ~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 190 KILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHHSCSSCEEEEEESCC
T ss_pred HHHHhCCcCCeEEEEEeeC
Confidence 3444334567889999996
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=142.74 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=103.2
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-c-------CCCCcEEEEeCC-cchHHHHHHHHHHhcCCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-F-------RDVWPVLILTPS-SLRLHWAAMIQQWLNIPP 243 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~-------~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~ 243 (666)
.|+|+|.+++..++. +..+|+..+||+|||+.++..+.. + .....+||++|+ .|..||.+++.+++....
T Consensus 76 ~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 154 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE-GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 154 (262)
T ss_dssp BCCHHHHHHHHHHHH-TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHhC-CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 589999999998887 567899999999999987654432 1 135679999999 899999999999875332
Q ss_pred CcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHH---hcCCccEEEEcCccccCChhH-HHHHH
Q 005980 244 SEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNIL---MSSNFKIVIADESHFLKNAQA-KRTAA 319 (666)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l---~~~~~~~vIiDEaH~~kn~~s-~~~~~ 319 (666)
..+.... ++....... .....+..|+|+|++.+....... .-.++++||+||||++.+.+. .....
T Consensus 155 ~~~~~~~---g~~~~~~~~-------~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 224 (262)
T 3ly5_A 155 HTYGLIM---GGSNRSAEA-------QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 224 (262)
T ss_dssp SCEEEEC---SSSCHHHHH-------HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ceEEEEE---CCCCHHHHH-------HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHH
Confidence 2222222 121111000 000012458899999987655432 224688999999999865432 23334
Q ss_pred hhhhhhhcceEEEeeccC
Q 005980 320 TLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP 337 (666)
+...+....+++++|||+
T Consensus 225 i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 225 IIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp HHHHSCSSSEEEEECSSC
T ss_pred HHHhCCCCCeEEEEEecC
Confidence 444444567889999998
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.51 E-value=2.9e-14 Score=141.50 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=102.6
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc---------CCCCcEEEEeCC-cchHHHHHHHHHHhcCC
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF---------RDVWPVLILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~---------~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
.++|+|.+++..++. |..+++..+||+|||+.++..+... .....+||+||+ .|..||.+++.++....
T Consensus 51 ~~~~~Q~~~i~~~~~-g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 129 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS-GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC 129 (242)
T ss_dssp SCCHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 589999999998886 6788999999999999866544322 124569999999 89999999999886432
Q ss_pred CCcEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH--HhcCCccEEEEcCccccCChh-HHHHHH
Q 005980 243 PSEIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI--LMSSNFKIVIADESHFLKNAQ-AKRTAA 319 (666)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~-s~~~~~ 319 (666)
...+..+. ++...... .........|+|+|++.+...... +.-.++++||+||||++.+.+ ......
T Consensus 130 ~~~~~~~~---g~~~~~~~-------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 199 (242)
T 3fe2_A 130 RLKSTCIY---GGAPKGPQ-------IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRK 199 (242)
T ss_dssp TCCEEEEC---TTSCHHHH-------HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHH
T ss_pred CceEEEEE---CCCChHHH-------HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHH
Confidence 22332222 12111000 000011245899999999765542 223468899999999986543 233344
Q ss_pred hhhhhhhcceEEEeeccC
Q 005980 320 TLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP 337 (666)
+...+....+.+++|||+
T Consensus 200 i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 200 IVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHTTSCSSCEEEEEESCC
T ss_pred HHHhCCccceEEEEEeec
Confidence 444444567889999997
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.43 E-value=1.8e-12 Score=132.60 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=103.2
Q ss_pred hcCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHH-HHHHhcCC---CCcEEEEeCC-cchHHHHHHHHHHhcC-CCC
Q 005980 172 SKLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAI-AVATCFRD---VWPVLILTPS-SLRLHWAAMIQQWLNI-PPS 244 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~al-a~~~~~~~---~~~~LIv~P~-sl~~qW~~e~~~~~~~-~~~ 244 (666)
..++|+|.+++..++.. +..+|+..+||+|||+..+ .++..+.. ...+||++|+ .|..|+.+.+.++... +..
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~ 192 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCc
Confidence 36899999999988874 4688999999999999865 44444432 2259999999 8999999999988743 222
Q ss_pred cEEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH---HhcCCccEEEEcCccccCC-hh-HHHHHH
Q 005980 245 EIVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI---LMSSNFKIVIADESHFLKN-AQ-AKRTAA 319 (666)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~---l~~~~~~~vIiDEaH~~kn-~~-s~~~~~ 319 (666)
.+.... ++.... ........|+|+|++.+...... +.-.++++||+||||++.+ .. ......
T Consensus 193 ~~~~~~---~~~~~~----------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~ 259 (300)
T 3fmo_B 193 KLAYAV---RGNKLE----------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (300)
T ss_dssp CEEEES---TTCCCC----------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHH
T ss_pred EEEEEe---CCccHh----------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHH
Confidence 222222 111110 01123456999999999776532 2223678999999999864 22 233344
Q ss_pred hhhhhhhcceEEEeeccC
Q 005980 320 TLPIIKKAQYALLLSGTP 337 (666)
Q Consensus 320 ~~~l~~~~~~~llLTgTP 337 (666)
+...+.+..+.+++|||+
T Consensus 260 i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 260 IQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp HHTTSCTTCEEEEEESCC
T ss_pred HHHhCCCCCEEEEEeccC
Confidence 444444567889999998
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.40 E-value=6.4e-12 Score=140.35 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=89.7
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHH-hcCCCCcEEEEeCC-cchHH---HHHHHHHHhcCCCCcEE
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVAT-CFRDVWPVLILTPS-SLRLH---WAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~-~~~~~~~~LIv~P~-sl~~q---W~~e~~~~~~~~~~~i~ 247 (666)
.++|-|..|+--+++ |. |....||.|||++++..+. .......++||+|+ .|..| |...+-+++|+. +.
T Consensus 79 ~Pt~VQ~~~ip~Llq-G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs---v~ 152 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE-GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS---VG 152 (997)
T ss_dssp CCCHHHHHHHHHHHT-TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC---EE
T ss_pred CCcHHHHhhcccccC-Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe---EE
Confidence 678889999987765 43 7778899999998765543 22345679999999 56544 666777776543 22
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHH-HHH-HH-------HhcC---CccEEEEcCccccCChhHH
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVL-KLQ-NI-------LMSS---NFKIVIADESHFLKNAQAK 315 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~-~~~-~~-------l~~~---~~~~vIiDEaH~~kn~~s~ 315 (666)
++.+ +...... ......+|++.|+..+. .+. +. +... ++.++|+||+|.+..
T Consensus 153 ~i~G---g~~~~~r---------~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi---- 216 (997)
T 2ipc_A 153 VIQH---ASTPAER---------RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI---- 216 (997)
T ss_dssp ECCT---TCCHHHH---------HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT----
T ss_pred EEeC---CCCHHHH---------HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH----
Confidence 2222 2111100 00113568899998883 221 11 1223 578999999995421
Q ss_pred HHHHhhhhhhhcceEEEeeccCCCCChHHHHHHHH
Q 005980 316 RTAATLPIIKKAQYALLLSGTPALSRPIELFKQLE 350 (666)
Q Consensus 316 ~~~~~~~l~~~~~~~llLTgTP~~n~~~el~~~l~ 350 (666)
.++..-+.+|| |+... ..+|..++
T Consensus 217 ---------DeartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 217 ---------DEARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp ---------SSTTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred ---------hCCCCCeeeeC-CCccc-hHHHHHHH
Confidence 13444488999 87766 55555554
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.38 E-value=3e-11 Score=133.80 Aligned_cols=91 Identities=10% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccccccc
Q 005980 474 AVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGL 552 (666)
Q Consensus 474 ~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~~Gl 552 (666)
.+.+.|.++.. .+.++|||..+...++.+.+.+... . +.+.|.. .+|.++++.|+.+.. ..+.+++....+||
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~--~~~~~~l~~f~~~~~-il~~V~~~~~~EGi 444 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKK--TRHEEVLELMKTGKY-LVMLVMRAKESEGV 444 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTT--CCHHHHHHHHHTSCC-EEEEEC--------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCC--CcHHHHHHHHhcCCe-EEEEEecCceecce
Confidence 34445544443 4678999999999999998888652 2 4555554 478999999988542 22333789999999
Q ss_pred Cccc----CCEEEEecCCCCcc
Q 005980 553 TLTA----ASTVIFAELSWTPG 570 (666)
Q Consensus 553 nL~~----a~~VI~~d~~wnp~ 570 (666)
|+++ +++||++.+|+-+.
T Consensus 445 D~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 445 EFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp -------CEEEEEEESCCCCCT
T ss_pred ecCCCcccccEEEEECCCCCCC
Confidence 9996 89999999886444
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.01 E-value=4.8e-09 Score=103.14 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=92.3
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh-c-CC----CCcEEEEeCC-cchHHHHHHHHHHhcCCCCc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC-F-RD----VWPVLILTPS-SLRLHWAAMIQQWLNIPPSE 245 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~-~-~~----~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~ 245 (666)
.++++|.+++..+.. |..+++..+||+|||.+...++.. . .. ...+++++|+ .+..|..+.+.+.++.....
T Consensus 61 p~~~~q~~~i~~i~~-g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQ-NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhc-CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 478999999988876 667889999999999765443332 1 11 2368999999 66777878887776533221
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCcccc-CChhHH--HHHHhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFL-KNAQAK--RTAATLP 322 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~-kn~~s~--~~~~~~~ 322 (666)
...... .. ..........++|+|++.+...... .-.++++||+||||.. -+.+.. ..+.+..
T Consensus 140 ~~g~~~--------~~------~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 140 SCGYSV--------RF------ESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp SEEEEE--------TT------EEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred eEEEee--------ch------hhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 111100 00 0001112356889999888776543 2347899999999984 222221 2222222
Q ss_pred hhhhcceEEEeeccCC
Q 005980 323 IIKKAQYALLLSGTPA 338 (666)
Q Consensus 323 l~~~~~~~llLTgTP~ 338 (666)
.. ...+.+++|||+-
T Consensus 205 ~~-~~~~~il~SAT~~ 219 (235)
T 3llm_A 205 AY-PEVRIVLMSATID 219 (235)
T ss_dssp HC-TTSEEEEEECSSC
T ss_pred hC-CCCeEEEEecCCC
Confidence 21 3457899999983
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.65 E-value=4.7e-08 Score=108.47 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=53.1
Q ss_pred cCchHHHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 173 KLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 173 ~L~p~Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
.+||+|.+.+..+ +..++.+++..+||+|||+..+..+.. ...+++|++|+ .+..|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--~~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--VKPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--HCSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 5899999977643 456777888899999999988766554 46789999999 78999999988764
No 94
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.74 E-value=0.0018 Score=73.19 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=51.3
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-----CCcEEEEeCC-cchHHHHHHHHHHhcCC
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD-----VWPVLILTPS-SLRLHWAAMIQQWLNIP 242 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-----~~~~LIv~P~-sl~~qW~~e~~~~~~~~ 242 (666)
-..|-|.|+++|.. .++.+++-...|+|||.+.+.-+.++-. ..++|+++++ ....+..+.+.+.++..
T Consensus 7 ~~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 7 LDSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp HTTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hhcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 35788999999972 2455666667999999998876665422 3579999999 56777888888876543
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.53 E-value=0.00039 Score=76.91 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=47.1
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHH
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLH 230 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~q 230 (666)
...|-+.|++++..++. ++-+++....|+|||.++.+++..+. ...++++++|+.....
T Consensus 187 ~~~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~ 246 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAAR 246 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHH
T ss_pred cCCCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHH
Confidence 45789999999999886 45678888999999998888777653 4578999999965433
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.46 E-value=0.00037 Score=75.19 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=44.9
Q ss_pred hcCchHHHHHHHHHHHc----CCCeeeecCCCCcHHHHHHHHHHhcCCC--CcEEEEeCCcch
Q 005980 172 SKLLPFQRDGVRFALQH----GGRILLADEMGLGKTIQAIAVATCFRDV--WPVLILTPSSLR 228 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~----~~~~iLad~~GlGKTi~ala~~~~~~~~--~~~LIv~P~sl~ 228 (666)
..|-|-|++++..++.. .+.++|....|+|||.++.+++..+... .++++++|+...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A 86 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH
Confidence 46889999999977643 4467888899999999988888776433 369999999543
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.13 E-value=0.0011 Score=73.93 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
-+.|+.++..++. ++-+++...+|+|||.++..++..+. ...++++++|+ .+..+-.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 5789999998886 45678889999999977666655442 24589999999 4555555555443
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.03 E-value=0.0021 Score=71.98 Aligned_cols=65 Identities=26% Similarity=0.264 Sum_probs=50.8
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCCc-chHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPSS-LRLHWAAMIQQ 237 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~s-l~~qW~~e~~~ 237 (666)
..|-+.|++++..++.+ +-+++..++|+|||.++..++..+. ...++|+++|+. .+.+-.+.+.+
T Consensus 179 ~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46899999999998863 4567888899999999888777653 467899999994 56666555554
No 99
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.03 E-value=0.0018 Score=61.86 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=27.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
.++..+||+|||..++..+..+. ...+++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46678899999999998877664 45689999886
No 100
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.02 E-value=0.0084 Score=62.35 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=83.0
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh--c-CCCCcEEEEeCC-cchHHHHHHHHHHhc-CCC-Cc
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC--F-RDVWPVLILTPS-SLRLHWAAMIQQWLN-IPP-SE 245 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~--~-~~~~~~LIv~P~-sl~~qW~~e~~~~~~-~~~-~~ 245 (666)
..|.|||+..+..+... ..+++.-.-+.|||..+.+++.+ . .....+++++|+ .....+-+.+..++. .+. ..
T Consensus 162 ~~L~p~Qk~il~~l~~~-R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSK-RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCCHHHHHHHHHHHHS-SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCCHHHHHHHHhhccC-cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 47999999999876443 33566666999999886665543 2 334579999998 344434467776653 121 00
Q ss_pred EEEEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhh
Q 005980 246 IVVVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIK 325 (666)
Q Consensus 246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~ 325 (666)
-.+... .. ..+.. ..+..+.+.+- ..+.+....++++|+||+|.+++. .....++...+.
T Consensus 241 ~~~~~~-----~~--~~I~f-------~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls 300 (385)
T 2o0j_A 241 PGIVEW-----NK--GSIEL-------DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVIS 300 (385)
T ss_dssp CCEEEE-----CS--SEEEE-------TTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHH
T ss_pred hhhccC-----Cc--cEEEe-------CCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhh
Confidence 000000 00 01111 11222323221 234455778999999999999873 123333433322
Q ss_pred h-cceEEEeeccCCCC
Q 005980 326 K-AQYALLLSGTPALS 340 (666)
Q Consensus 326 ~-~~~~llLTgTP~~n 340 (666)
. ...++++..||-..
T Consensus 301 ~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 301 SGRRSKIIITTTPNGL 316 (385)
T ss_dssp STTCCEEEEEECCCSS
T ss_pred cCCCCcEEEEeCCCCc
Confidence 2 34678888898544
No 101
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.84 E-value=0.0014 Score=73.31 Aligned_cols=67 Identities=24% Similarity=0.263 Sum_probs=52.3
Q ss_pred cCchHHHHHHHHH---HHcCCCeeeecCCCCcHHHHHHHHHHhc--CCCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 173 KLLPFQRDGVRFA---LQHGGRILLADEMGLGKTIQAIAVATCF--RDVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 173 ~L~p~Q~~~v~~~---~~~~~~~iLad~~GlGKTi~ala~~~~~--~~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
++||+|++.+..+ +..|+.+++..+||+|||+..+..+... ....+++|++|+ ++..|+.+++.+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 5799999988743 5568889999999999999877544332 235789999999 88999999988865
No 102
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.0011 Score=63.52 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
|.-.++..+||+|||..++.++..+. ...+++++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 44457789999999999998888764 35688888775
No 103
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.76 E-value=0.0019 Score=61.12 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.3
Q ss_pred eeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 193 LLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
++..+||+|||..++..+..+. ...+++|+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4678899999999999888663 46789999986
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.65 E-value=0.02 Score=63.57 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=83.1
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHh--cCC-CCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEE
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATC--FRD-VWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIV 247 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~--~~~-~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~ 247 (666)
..|.|||+..+..+.. ...+++.-.-|.|||..+.+++.+ ... ..++++++|+ .........+..++...+..+.
T Consensus 162 ~~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred CcCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 4799999999886633 334566667999999876544432 223 3479999998 4444455677777632111000
Q ss_pred EEEecCCCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhh-
Q 005980 248 VVLSQLGGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKK- 326 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~- 326 (666)
. .........+.. ..+..+...+- ....+...+++++|+||+|.+++.. ....++...+..
T Consensus 241 ~-----~~~~~~~~~i~~-------~nGs~i~~~s~-----~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 241 P-----GIVEWNKGSIEL-------DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp C-----CEEEECSSEEEE-------TTSCEEEEEEC-----CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred c-----ccccCCccEEEe-------cCCCEEEEEeC-----CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 0 000000001111 11122222221 1233455679999999999998742 333444433322
Q ss_pred cceEEEeeccCCCC
Q 005980 327 AQYALLLSGTPALS 340 (666)
Q Consensus 327 ~~~~llLTgTP~~n 340 (666)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34678888999544
No 105
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.63 E-value=0.0028 Score=71.44 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=55.3
Q ss_pred hhhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 170 IESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 170 ~~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
+...|-+.|++||..++....=.|+..++|+|||.+.+.++..+ ....++||++|+ ..+++..+.+...
T Consensus 186 ~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp SSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 34579999999999998755557889999999999988777654 456789999999 5677777766654
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.53 E-value=0.0032 Score=66.38 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=67.3
Q ss_pred eeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecCCCCC
Q 005980 193 LLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSNTKRN 271 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (666)
++....|+|||......+. ..+.||++|+ .+...|.+.+.+. +..
T Consensus 165 ~I~G~aGsGKTt~I~~~~~----~~~~lVlTpT~~aa~~l~~kl~~~-~~~----------------------------- 210 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN----FEEDLILVPGRQAAEMIRRRANAS-GII----------------------------- 210 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC----TTTCEEEESCHHHHHHHHHHHTTT-SCC-----------------------------
T ss_pred EEEcCCCCCHHHHHHHHhc----cCCeEEEeCCHHHHHHHHHHhhhc-Ccc-----------------------------
Confidence 5677799999987766543 2678999999 7788888876432 100
Q ss_pred CCCCCcEEEEeHHHHHHHHHHHhcCCccEEEEcCccccCChhHHHHHHhhhhhhhcceEEEeeccCCC
Q 005980 272 IPLDGLFNIISYDVVLKLQNILMSSNFKIVIADESHFLKNAQAKRTAATLPIIKKAQYALLLSGTPAL 339 (666)
Q Consensus 272 ~~~~~~v~I~sy~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~~~~llLTgTP~~ 339 (666)
......+.|++.+...........+++||+|||..+-.. ...++..+. ++ .+++|.|=|-|
T Consensus 211 --~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~---~l~~l~~~~-~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTG---CVNFLVEMS-LC-DIAYVYGDTQQ 271 (446)
T ss_dssp --CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHH---HHHHHHHHT-TC-SEEEEEECTTS
T ss_pred --ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHH---HHHHHHHhC-CC-CEEEEecCccc
Confidence 000122788888765433221234899999999877432 222233332 33 78888898855
No 107
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.47 E-value=0.019 Score=58.85 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHH---HcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 174 LLPFQRDGVRFAL---QHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 174 L~p~Q~~~v~~~~---~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|+|.+.+..+. +.|. ..++..+.|+|||..|.+++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 5899999887664 3332 378999999999999999988764
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.25 E-value=0.026 Score=57.51 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHH
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHW 231 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW 231 (666)
..++|..++|+|||..+-+++..+.. ..+++.+....+...+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 47899999999999998888876633 4566666544444333
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.21 E-value=0.0011 Score=61.67 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=27.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
.++..+||+|||..++.++..+. ...+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46788899999999988877653 35678988886
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.011 Score=55.06 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
.++..+||+|||..++.++..+. ...+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 46678899999999998888763 46789999886
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.15 E-value=0.011 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...++|..++|+|||..+-+++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999988887663
No 112
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.00 E-value=0.012 Score=59.96 Aligned_cols=37 Identities=35% Similarity=0.292 Sum_probs=27.7
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
.+++|..++|+|||..|-+++..+. .+++.|....+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~ 88 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLV 88 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT--CEEEEEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC--CCEEEEchHHHh
Confidence 4689999999999999999888753 555555544443
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.91 E-value=0.041 Score=50.59 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=37.5
Q ss_pred hHHHHHHHHHH--------HcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCCcchHHH
Q 005980 176 PFQRDGVRFAL--------QHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPSSLRLHW 231 (666)
Q Consensus 176 p~Q~~~v~~~~--------~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~sl~~qW 231 (666)
+.|.+++..+. ..+..++|..++|+|||..+-+++..+. ...+++.+....++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 56888777664 2366788999999999999888877663 23355554433444433
No 114
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.82 E-value=0.012 Score=52.06 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=21.1
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHh
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
...+..++|..++|+|||..|-++...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 345678999999999999877665543
No 115
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.77 E-value=0.022 Score=56.68 Aligned_cols=36 Identities=36% Similarity=0.247 Sum_probs=26.9
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.+.+++|..++|+|||..|-+++..+. .+++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~ 85 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGS 85 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehH
Confidence 356789999999999999988887653 455555443
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.76 E-value=0.042 Score=50.48 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 176 PFQRDGVRFALQH--GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 176 p~Q~~~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+.+.+...+.. +..++|..+.|+|||..+-+++..+.
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444444432 35689999999999999988877653
No 117
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.75 E-value=0.021 Score=63.70 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec--cccc
Q 005980 473 PAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM--KAGG 549 (666)
Q Consensus 473 ~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st--~a~~ 549 (666)
..+.+.|..+.. .+..++||..+...++.+.+.+.. .... ..-+++..+|..++++|+ +++ .+|+++ ....
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~--~vL~~v~~gsf~ 507 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDH--GTIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSC--CEEEEETTSCC-
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCC--cEEEEEecCcee
Confidence 445555555543 456688888888888888877762 2222 333344568999999999 553 345554 5899
Q ss_pred cccCccc--CCEEEEecCCCCcc-----------------------------hhhhhhhhhhccCCCCcEEE
Q 005980 550 VGLTLTA--ASTVIFAELSWTPG-----------------------------DLIQAEDRAHRIGQVSSVNV 590 (666)
Q Consensus 550 ~GlnL~~--a~~VI~~d~~wnp~-----------------------------~~~Qa~gR~~R~Gq~~~V~v 590 (666)
||||+++ +..||+..+|+-+. ...|++||+-|--....|.+
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 9999974 88999988775321 12588888888665555443
No 118
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.71 E-value=0.0089 Score=60.43 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|..++|+|||..|-+++..+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999988887663
No 119
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.70 E-value=0.015 Score=60.21 Aligned_cols=34 Identities=32% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
..++||..++|+|||..|-+++..+. .+++.|..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CCEEEeeH
Confidence 45789999999999999999988764 45555543
No 120
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.019 Score=59.73 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=37.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
..|+||..++|+|||+.|-|++.... .+++.|..+.++..|.-|-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGGSCSSTTHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHhhccccchHH
Confidence 57899999999999999999998765 77888888777766654433
No 121
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.68 E-value=0.057 Score=56.52 Aligned_cols=40 Identities=30% Similarity=0.257 Sum_probs=28.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~q 230 (666)
..++||..++|+|||..|-+++..+. .+++.+.+..+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN--ATFFNISAASLTSK 187 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEECSCCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--CcEEEeeHHHhhcc
Confidence 35789999999999999998877653 56666666555443
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.66 E-value=0.01 Score=55.19 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=25.3
Q ss_pred eeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~ 225 (666)
.++..+||+|||...+-.+..+ ....+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4677889999997766665544 335788999886
No 123
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.024 Score=59.92 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e 234 (666)
..|+||..++|+|||..|-+++..+. .+++.|..+.++..|.-+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhhccccchH
Confidence 56899999999999999999998765 677777777766555433
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.29 E-value=0.019 Score=54.04 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=26.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
-++..+||+|||..++..+..+. ...+++|+.|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 36778899999988887776553 35678999886
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.03 Score=58.54 Aligned_cols=45 Identities=27% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e~ 235 (666)
..|+||..++|+|||+.|-|+|.... .+++.|..+.++..|.-|-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHhhhccCchH
Confidence 56899999999999999999998765 6788887777766554443
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.99 E-value=0.037 Score=56.28 Aligned_cols=37 Identities=35% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl 227 (666)
.+++|..++|+|||..|-+++..+. ..+++.+....+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~-~~~~~~i~~~~l 82 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDL 82 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT-SCEEEEEECCSS
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC-CCcEEEEEhHHH
Confidence 5789999999999999999988762 345554444433
No 127
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.98 E-value=0.12 Score=53.48 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=35.3
Q ss_pred chHHHHHHHHHH---Hc----CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 175 LPFQRDGVRFAL---QH----GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 175 ~p~Q~~~v~~~~---~~----~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.+.+++++..+. .. +..++|..++|+|||..|-+++..+....|.+.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 345555554443 22 2368999999999999999999888755566655543
No 128
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.92 E-value=0.066 Score=55.33 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=27.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl 227 (666)
..+++|..++|+|||..|-+++..+. .+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC--CeEEEEehHHh
Confidence 45789999999999999998887653 55555554443
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.83 E-value=0.065 Score=52.39 Aligned_cols=36 Identities=36% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s 226 (666)
..+++|..++|+|||..|-+++..+. .+++.+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~--~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAE 74 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT--CCEEEEETTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CCEEEechHH
Confidence 45789999999999999988887653 4555554443
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.79 E-value=0.033 Score=53.52 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=29.5
Q ss_pred HHHHHHHHHH--cCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 178 QRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 178 Q~~~v~~~~~--~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
..+.+..+.. .+..++|..+.|+|||..+-+++..+.. ..+++.+
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3344444443 3567899999999999998888776542 2344444
No 131
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.76 E-value=0.046 Score=54.76 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRL 229 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~ 229 (666)
..+++|..++|+|||..|-+++..+. .+++.+..+.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~ 74 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELES 74 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhh
Confidence 34678889999999999999988773 5666665544443
No 132
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.69 E-value=0.087 Score=51.74 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcc
Q 005980 184 FALQHGGRILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSL 227 (666)
Q Consensus 184 ~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl 227 (666)
.+...+..++|..++|+|||..|-+++..... ..|++.|..+.+
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 33445678999999999999999888877654 356665544444
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.67 E-value=0.21 Score=53.10 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCCcch
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPSSLR 228 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~sl~ 228 (666)
..++|..++|+|||..+-+++..+.. ..+++.+....+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 46899999999999998888776532 3455555443433
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.56 E-value=0.14 Score=52.94 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=28.1
Q ss_pred chHHHHHHHHHH------HcCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 175 LPFQRDGVRFAL------QHGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 175 ~p~Q~~~v~~~~------~~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+..+.+.+..++ ..+..++|..+.|+|||..+-+++..+
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555444 235578999999999999988887765
No 135
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.56 E-value=0.044 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=17.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
.++...+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4788899999999988865543
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.48 E-value=0.074 Score=55.27 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHc------CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 175 LPFQRDGVRFALQH------GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~------~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+..+.+.+..++.. +..++|..+.|+|||..+-+++..+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543332 3458999999999999998888765
No 137
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.032 Score=58.89 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e 234 (666)
.+|+||..++|+|||..|-|++.... .+++.|..+.++..|.-+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN--ATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEehhhhhhcccch
Confidence 56899999999999999999998765 678888877777655433
No 138
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.049 Score=57.53 Aligned_cols=44 Identities=30% Similarity=0.214 Sum_probs=35.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~e 234 (666)
..|+||..++|+|||+.|-+++.... .+++.|..+.++..|.-+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCCCSSSH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHhhcccCCH
Confidence 56899999999999999999998765 677777777776555333
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.45 Score=44.52 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 175 LPFQRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+....+.+..++..+ ..++|..+.|+|||..+-+++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555666555543 358999999999999988887764
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.33 E-value=0.16 Score=44.64 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.6
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEE
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATCFRD-VWPVL 220 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~L 220 (666)
...+..++|..++|+|||..|-++...... ..|++
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 445678999999999999999888776533 44544
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.28 E-value=0.4 Score=49.64 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=25.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCC--CcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDV--WPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~--~~~LIv~ 223 (666)
.++|..+.|+|||..+-+++..+... .+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 58899999999999998888776543 4555554
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.05 Score=57.28 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHW 231 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW 231 (666)
.+|+||..++|+|||..|-|+|..+. .+++.|..+.++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchhhccc
Confidence 56799999999999999999998765 677777766665544
No 143
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.05 E-value=0.049 Score=58.11 Aligned_cols=40 Identities=33% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRL 229 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~ 229 (666)
..++||..++|+|||..|-+++..+. ..+++.|....+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~-~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC-SSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-CCCEEEEeHHHHHh
Confidence 35789999999999999999988762 34566565555543
No 144
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.063 Score=61.57 Aligned_cols=66 Identities=24% Similarity=0.280 Sum_probs=51.7
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCC-cchHHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPS-SLRLHWAAMIQQW 238 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~-sl~~qW~~e~~~~ 238 (666)
..|-+.|++||..++.. +-.++..+.|+|||.++..++..+. ...++|+++|+ ..+.+-.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR-PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTC-SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46889999999998863 3467888899999999887776553 46899999999 4566666666653
No 145
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.00 E-value=0.32 Score=48.54 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
+.+++|..++|+|||..|-+++..+. .+++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~--~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEcc
Confidence 56789999999999999988888763 45544433
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.07 Score=54.73 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcC--CCeeeecCCCCcHHHHHHHHHHhcCC----CCcEEEEeCCc--chHHHHHHHHHH
Q 005980 176 PFQRDGVRFALQHG--GRILLADEMGLGKTIQAIAVATCFRD----VWPVLILTPSS--LRLHWAAMIQQW 238 (666)
Q Consensus 176 p~Q~~~v~~~~~~~--~~~iLad~~GlGKTi~ala~~~~~~~----~~~~LIv~P~s--l~~qW~~e~~~~ 238 (666)
....+.+..++..+ ..++|.++.|+|||..+-+++..+.. ...++-+.|+. -...+.+.+..+
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 34455666666554 56899999999999999888876531 23444454443 233444444443
No 147
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.90 E-value=0.074 Score=60.95 Aligned_cols=65 Identities=26% Similarity=0.264 Sum_probs=50.3
Q ss_pred hcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCCc-chHHHHHHHHH
Q 005980 172 SKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPSS-LRLHWAAMIQQ 237 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~s-l~~qW~~e~~~ 237 (666)
..|-+.|++++..++.. +-.++..++|+|||.++..++..+. ...++|+++|+. .+.+-.+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 46899999999998863 4568888899999999888777653 467899999994 45555555543
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.042 Score=59.96 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchH
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRL 229 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~ 229 (666)
..++|..++|+|||..|-+++..+ ..+++-+..+.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l--~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL--GYDILEQNASDVRS 115 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT--TCEEEEECTTSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc--CCCEEEEeCCCcch
Confidence 468999999999999999998877 35666665554433
No 149
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.67 E-value=0.096 Score=52.36 Aligned_cols=25 Identities=44% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+.+++|..++|+|||..|-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4678999999999999998888765
No 150
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.66 E-value=0.46 Score=47.95 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHcCC--C-eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 175 LPFQRDGVRFALQHGG--R-ILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~--~-~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.+.....+..++..+. + +++..++|+|||..+-+++..+. .+++-+.++
T Consensus 31 ~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~--~~~~~i~~~ 82 (324)
T 3u61_B 31 PAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN--ADMMFVNGS 82 (324)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--EEEEEEETT
T ss_pred cHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--CCEEEEccc
Confidence 3455666666665433 3 46677799999999999887763 344444443
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.35 Score=48.56 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=23.6
Q ss_pred HHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHh
Q 005980 181 GVRFALQHGG--RILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 181 ~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~ 212 (666)
.+...++.+. ..|+..+.|.|||-.|.+++..
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444455443 4789999999999999888763
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.40 E-value=0.12 Score=50.99 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.+++|..++|+|||..|-+++.... .+++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~--~~~~~i 95 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN--FPFIKI 95 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--CSEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC--CCEEEE
Confidence 4689999999999999998888643 454444
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.17 E-value=0.44 Score=47.92 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHhc
Q 005980 175 LPFQRDGVRFALQHGG--RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~~ 213 (666)
++...+.+..++..+. .++|.++.|+|||..|-+++..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4556666666665443 58999999999999998888765
No 154
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.88 E-value=0.62 Score=49.49 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 181 GVRFALQHGG--RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 181 ~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+..++..+. .+||..++|+|||..|-+++..+.
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4445555443 479999999999999988887653
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.84 E-value=0.91 Score=42.93 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++...+.+..++..+. .++|..+.|+|||..+-+++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666766665544 478999999999999888877654
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.69 E-value=0.15 Score=52.64 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHc------CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFALQH------GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~------~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..+.+.+..++.. +..++|..+.|+|||..+-+++..+.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44566666544432 45689999999999999888877653
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.58 Score=47.08 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=22.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+++++|..++|+|||.++-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 55688999999999999998888764
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.64 E-value=0.083 Score=53.11 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=28.6
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcch
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLR 228 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~ 228 (666)
.+.+++|..++|+|||..|-+++..+. .+++.|....+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~ 86 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 86 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHH
Confidence 356789999999999999999888764 555555433343
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.64 E-value=0.26 Score=51.57 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=27.7
Q ss_pred chHHHHHHHHHH-H--------cCCCeee--ecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFAL-Q--------HGGRILL--ADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~-~--------~~~~~iL--ad~~GlGKTi~ala~~~~~~ 214 (666)
|..+.+.+..++ . .+..++| ..+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 556666666555 2 2334677 79999999999888877653
No 160
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.49 E-value=0.14 Score=51.33 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPS 225 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~ 225 (666)
.++|..++|+|||..|-+++..+.. ..+++.+-..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 5799999999999999988887643 4566665443
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.43 E-value=0.6 Score=49.22 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=31.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeCCcchHHHHHHHHHHh
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTPSSLRLHWAAMIQQWL 239 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P~sl~~qW~~e~~~~~ 239 (666)
-++++...|+|||.++..++.++.. ..++++|+-..-...-.+++..|.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 3577888999999999998887754 456777763322222234444443
No 162
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.30 E-value=0.45 Score=47.76 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=30.8
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcc
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSL 227 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl 227 (666)
..+..++|..++|+|||..|-++..... ...|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 4467899999999999999988887653 3567766654444
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.26 E-value=0.16 Score=54.60 Aligned_cols=33 Identities=33% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
..+++|..++|+|||..|-+++..+ ..+++.|.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~--~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC--SSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh--CCCEEEEE
Confidence 4578999999999999999888765 35555554
No 164
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=92.20 E-value=0.86 Score=49.89 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEec--ccc
Q 005980 472 IPAVLDYLETVIE-AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSM--KAG 548 (666)
Q Consensus 472 l~~l~~~l~~~~~-~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st--~a~ 548 (666)
...+.+.|.++.. .+..+|||..+...++.+.+ ..+.+ +.+.|... .+.++++.|+.+++ .+|+++ ...
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~-v~~q~~~~--~~~~~~~~~~~~~~--~vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLP-KYVESEDS--SVEDLYSAISANNK--VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSS-EEECCSSC--CHHHHHHHTTSSSS--CEEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCc-EEEcCCCC--CHHHHHHHHHhcCC--eEEEEEeccee
Confidence 4566666666554 46688888888888887776 23433 33444321 35678899964443 345554 789
Q ss_pred ccccCcc-----cCCEEEEecCCCCcc
Q 005980 549 GVGLTLT-----AASTVIFAELSWTPG 570 (666)
Q Consensus 549 ~~GlnL~-----~a~~VI~~d~~wnp~ 570 (666)
.||||++ .++.||+..+|+-+.
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp~~ 476 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYPPP 476 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCCCC
T ss_pred cccccccccCCcceeEEEEEcCCCCCC
Confidence 9999999 488999988776443
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.05 E-value=0.88 Score=46.56 Aligned_cols=52 Identities=15% Similarity=-0.022 Sum_probs=36.1
Q ss_pred HHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHH
Q 005980 180 DGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHW 231 (666)
Q Consensus 180 ~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW 231 (666)
.++..++. .|.-++|+.+.|+|||..++.++... ...++++++.-.....++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH
Confidence 35556654 34446888999999999998887654 346788888766544444
No 166
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.94 E-value=0.36 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..+++|..++|+|||..+-+++..+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4468999999999999998888765
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.82 E-value=0.26 Score=43.70 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=21.5
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+..++|..++|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466688899999999998887776553
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.77 E-value=1.1 Score=45.46 Aligned_cols=40 Identities=15% Similarity=-0.076 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
-|+.+.+.+..++..++.++|..+.|.|||..+-.++...
T Consensus 16 gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 16 DREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4667777777777666678899999999999888777664
No 169
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.56 E-value=0.16 Score=54.41 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~q 230 (666)
++++||..++|+|||..|-+++..+....+++.+..+.+...
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 357999999999999999999998765566666665555433
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.50 E-value=0.57 Score=47.00 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHhc
Q 005980 175 LPFQRDGVRFALQHGG--RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~~ 213 (666)
++...+.+..++..+. .++|..+.|+|||..+-+++..+
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4455666666665432 38999999999999998888765
No 171
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.35 E-value=1.2 Score=45.70 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=59.4
Q ss_pred HHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 181 GVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 181 ~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
++..++. .|.-++|+.+.|+|||..|+.++... ....+++++.......+|. .+.+++...++.+.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~---a~~~g~d~~~l~i~----- 132 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY---ARALGVNTDELLVS----- 132 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEE-----
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH---HHHcCCCHHHceee-----
Confidence 4555554 34456889999999999998887754 3456888888776566653 23344332222111
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCccccC
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHFLK 310 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~~k 310 (666)
. ..+.+.+...... .....+++||||....+.
T Consensus 133 ----------~--------------~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 133 ----------Q--------------PDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ----------C--------------CSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred ----------c--------------CCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 0 0123333333332 234579999999999885
No 172
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.14 E-value=0.85 Score=47.98 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=24.9
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
-++++...|+|||.++..++.++.. .+++++++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567788999999999888877643 45666665
No 173
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.91 E-value=0.37 Score=49.72 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
+.+++|..++|+|||..|-+++..+. .|++.+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~--~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD--VPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEechH
Confidence 45789999999999999999988763 666666444
No 174
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.89 E-value=0.49 Score=54.09 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHH--cCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 176 PFQRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 176 p~Q~~~v~~~~~--~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..+...+...+. .+.+++|..++|+|||..+-+++..+
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 344444444443 35578999999999999988887765
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.88 E-value=2.3 Score=43.07 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHcCCC--eeeecCCCCcHHHHHHHHHHhcC
Q 005980 176 PFQRDGVRFALQHGGR--ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~~--~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++....+...+..|.- .++..+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4455666667775543 78999999999999998888754
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.70 E-value=1.2 Score=45.60 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHcCC---CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFALQHGG---RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~---~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++...+.+..++..+. .++|..+.|+|||..+-+++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455566666665443 268999999999999998888764
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.47 E-value=3.3 Score=38.84 Aligned_cols=45 Identities=31% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAA 233 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~ 233 (666)
|.-++|..+.|+|||..+..++... ...++++++.......+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHH
Confidence 4456788999999998888777543 34567888775543333333
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.37 E-value=1.2 Score=45.13 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++|..++|+|||..|-+++..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4789999999999999988877653
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.21 E-value=1.7 Score=44.40 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=35.0
Q ss_pred HHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHH
Q 005980 180 DGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLH 230 (666)
Q Consensus 180 ~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~q 230 (666)
..++.++. .|.-++|..+.|+|||..++.++..+. ..++++.|.......+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 35566654 122357788899999999988887653 4577888887754443
No 180
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.10 E-value=0.24 Score=48.22 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
..+++|..++|+|||..|-+++..+. .|++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 44689999999999999888877653 344444
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.91 E-value=0.37 Score=54.83 Aligned_cols=43 Identities=28% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHWAA 233 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW~~ 233 (666)
..|+||..++|+|||..|=+++..+. .+++.|....++..|..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHHHHSSCTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHHhhcccch
Confidence 45789999999999999998887654 55665555455544433
No 182
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.17 E-value=2.2 Score=47.23 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.-.+.+.+.+..+..++|..+.|+|||..|-+++..+.
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44567778888888999999999999999998888764
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.15 E-value=0.73 Score=42.67 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=28.9
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEe
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILT 223 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~ 223 (666)
..+.+++-...|-|||-.|++++... ....+++|+-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45678888889999999999887754 4567888883
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.88 E-value=1.8 Score=40.43 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=30.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc--chHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS--LRLHWAA 233 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s--l~~qW~~ 233 (666)
|.-++|..+.|+|||..+..++. ....+++++.-.. -...|..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHH
Confidence 44568889999999999888877 4467788776543 3344443
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.86 E-value=2.6 Score=43.14 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCc
Q 005980 181 GVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSS 226 (666)
Q Consensus 181 ~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~s 226 (666)
++..++. .|.-++|+.+.|+|||..|+.++... ....++++|....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555553 34457899999999999999887754 3456888887753
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.66 E-value=3.8 Score=43.26 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCCcchHHHHHHH
Q 005980 181 GVRFAL---QHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 181 ~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~sl~~qW~~e~ 235 (666)
.+..++ ..|.-++|+..+|+|||.-++.++.... ...|++++....-..++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 345554 2344468999999999999988777543 356899998765455555544
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.08 E-value=2.2 Score=45.33 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=34.2
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeCCcchHHHHHH
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P~sl~~qW~~e 234 (666)
..|.-++|+..+|+|||..++.++.... ...+++++....-..+....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH
Confidence 3355578999999999999988877553 34589999876444444444
No 188
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.03 E-value=5.5 Score=37.64 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh--cCC-----CCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC--FRD-----VWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~--~~~-----~~~~LIv~P~s 226 (666)
|.-++|..+.|+|||..+..++.. +.. ..+++.+.-..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 445678889999999999888774 321 45677776543
No 189
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=87.90 E-value=1.7 Score=48.20 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=35.9
Q ss_pred hcCchHHHHHHHHHHH--cCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 172 SKLLPFQRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 172 ~~L~p~Q~~~v~~~~~--~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
..+.+.|.+++..++. .+. .+|..+-|-|||..+-.++..+. ..++|.+|+
T Consensus 174 ~~~T~dQ~~al~~~~~~~~~~-~vlta~RGRGKSa~lG~~~a~~~--~~~~vtAP~ 226 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPPGV-AAVTAARGRGKSALAGQLISRIA--GRAIVTAPA 226 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCSEE-EEEEECTTSSHHHHHHHHHHHSS--SCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhhhCe-EEEecCCCCCHHHHHHHHHHHHH--hCcEEECCC
Confidence 3677899999998876 333 34445599999965555555543 457999998
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.64 E-value=4.2 Score=40.66 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC---CCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCCCCCccceeEEecC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD---VWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLGGSNRSGFTIVSSN 267 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~---~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 267 (666)
.++++.+.|+|||..++-++..... .++++.|....-+.+ +..+.+++...++.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~----------------- 89 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTP----------------- 89 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEE-----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEc-----------------
Confidence 4678999999999998877765432 567888887643333 12344555443332211
Q ss_pred CCCCCCCCCcEEEEeHHHH-HHHHHH---HhcCCccEEEEcCccccC
Q 005980 268 TKRNIPLDGLFNIISYDVV-LKLQNI---LMSSNFKIVIADESHFLK 310 (666)
Q Consensus 268 ~~~~~~~~~~v~I~sy~~l-~~~~~~---l~~~~~~~vIiDEaH~~k 310 (666)
-++.+.+ ....+. +....+++||+|=...+-
T Consensus 90 ------------~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 90 ------------VQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------------CSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------------CCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 1133333 222222 345679999999988774
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.44 E-value=0.68 Score=49.44 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
..+++|..++|+|||..|-+++.... .|++.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN--VPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCC
Confidence 34689999999999999988877543 4444443
No 192
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.39 E-value=2 Score=48.94 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred CCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHH----HhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEE
Q 005980 466 DSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLF----LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L----~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 541 (666)
.++++|--...-.+...+..|.+++|.+.....+..+.+.+ ...|+++..++|+++..+|....+...++. +.++
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~-~~Iv 475 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ-IDVV 475 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC-CCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC-CCEE
Confidence 46788988777666666678999999999887666555544 445899999999999999999999998875 3566
Q ss_pred EEeccccccccCcccCCEEEEecCCC
Q 005980 542 VLSMKAGGVGLTLTAASTVIFAELSW 567 (666)
Q Consensus 542 L~st~a~~~GlnL~~a~~VI~~d~~w 567 (666)
+.+.......+++...+.||+=+.+-
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCCC
T ss_pred EECHHHHhhhhhccCCceEEecccch
Confidence 66666666677888888888876653
No 193
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.31 E-value=2.5 Score=40.25 Aligned_cols=48 Identities=17% Similarity=0.064 Sum_probs=33.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
|.-++|+.++|+|||..++.++... ....+++++.-.....+....+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHH
Confidence 4456888899999999988776644 34678888887654455444443
No 194
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.28 E-value=1.2 Score=44.54 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCC--CeeeecCCCCcHHHHHHHHHHhc
Q 005980 176 PFQRDGVRFALQHGG--RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 176 p~Q~~~v~~~~~~~~--~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+...+.+..++..+. .++|..+.|+|||..|-+++..+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 344445554444332 48999999999999998888765
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.90 E-value=0.28 Score=55.77 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSLRLHW 231 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl~~qW 231 (666)
..++||..++|+|||+.|-+++.... .+++.|..+.++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~--~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT--CEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC--CceEEeccchhhccc
Confidence 45789999999999999999888764 566666555565544
No 196
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.71 E-value=0.7 Score=47.77 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=25.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
...++|..++|+|||..|-+++..+. .|++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~--~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD--IPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC--CCEEEe
Confidence 45789999999999999999888763 454444
No 197
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=86.01 E-value=0.67 Score=52.63 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=47.9
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
-..|-|.|+++|.. ..+.+++....|+|||.+.+.-+.++- ....+|+|+.+ .......+.+.+.++
T Consensus 9 l~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp HTTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred HhhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 35689999999975 245566666699999998876555442 23569999998 456666666776654
No 198
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=85.59 E-value=0.69 Score=52.03 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=47.9
Q ss_pred cCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC-----CCCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 173 KLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR-----DVWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~-----~~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
.|-|.|+++|.. .++.+++....|+|||.+.+.-+.++- ....+|+|+.+ .......+.+.+.++
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 477899999975 245666666799999998876555432 24679999988 567777777877765
No 199
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.59 E-value=1.9 Score=43.12 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++|..++|+|||..|-+++..+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999988877653
No 200
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.93 E-value=0.74 Score=52.59 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
.++|..++|+|||..|-+++..+. .+++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~--~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG--IELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc--CCEEEE
Confidence 479999999999999998888763 444433
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.34 E-value=1.7 Score=49.63 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=24.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR-DVWPVLIL 222 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv 222 (666)
.++|..++|+|||..|-+++..+. ...+++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 489999999999999999888763 34455444
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.83 E-value=1.3 Score=51.37 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.4
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+.++|..++|+|||..|-+++..+.. ..+++.|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 36799999999999999988887643 3455544
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.61 E-value=4.8 Score=50.27 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=61.4
Q ss_pred HHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 181 GVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 181 ~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
.+..++. .+.-++|+.++|+|||..|+.++.... ...+++++.-.....||. .+.+++...++.+.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~---A~rlG~~~~~l~i~----- 790 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS----- 790 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEE-----
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH---HHHcCCCccceEEe-----
Confidence 4555553 244468999999999999998887653 456899998887777875 34444332222110
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHHH-HhcCCccEEEEcCccccCC
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQNI-LMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~~-l~~~~~~~vIiDEaH~~kn 311 (666)
. -.+.+.+...... .....+++||+|..+.+..
T Consensus 791 -----------~-------------~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 791 -----------Q-------------PDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp -----------C-------------CSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred -----------c-------------CCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 0 0123333332222 2235789999999988764
No 204
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.99 E-value=5 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.6
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..+|..+.|+|||..+-+++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999988888744
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.36 E-value=4.5 Score=40.35 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=24.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+++..+.|+|||.++..++..+.. .++++++.-
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 456778999999998888877643 556777653
No 206
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.32 E-value=6.7 Score=49.05 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHH
Q 005980 181 GVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLH 230 (666)
Q Consensus 181 ~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~q 230 (666)
.+..++. ++..++|..++|+|||..|++++... ...++++++.....+.+
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCH
Confidence 3555554 56678999999999999998887753 45678888888755443
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.89 E-value=10 Score=36.89 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=30.6
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCC-----------CCcEEEEeCCcchHHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRD-----------VWPVLILTPSSLRLHW 231 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~-----------~~~~LIv~P~sl~~qW 231 (666)
.|.-++|..+.|+|||..+..++..+.. ..+++++.-..-..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 4556788889999999998877764433 3577777665444443
No 208
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.57 E-value=6.5 Score=39.54 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 175 LPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 175 ~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
|+.+.+.+.. +.. +.++|..+.|.|||..+-.++....
T Consensus 18 R~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 18 REKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp CHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5566666666 654 4678899999999998888777654
No 209
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.33 E-value=2.8 Score=41.08 Aligned_cols=26 Identities=42% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|++|..+.|+|||..+=+++..+.
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34589999999999999888877654
No 210
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.10 E-value=1.3 Score=42.84 Aligned_cols=25 Identities=44% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+++|..++|+|||..+-+++..+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999998888877654
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.81 E-value=5.9 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=26.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC--CCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR--DVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~--~~~~~LIv~P 224 (666)
+.-+++....|+|||.++..++..+. ...+++++.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 44456777899999999988887765 3447777753
No 212
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=80.74 E-value=1.9 Score=46.09 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=41.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS-SLRLHWAAMIQQWLN 240 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~-sl~~qW~~e~~~~~~ 240 (666)
+....|..-+|+|||+.+.+++... .+|+|||||+ ....+|.+++..|++
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3456778889999999888877654 4799999999 678999999999874
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.73 E-value=2.2 Score=39.32 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
.+++|..++|+|||..|-+++..+.. ..+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 57899999999999999888876643 44555543
No 214
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.64 E-value=2.4 Score=45.75 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEE
Q 005980 174 LLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLI 221 (666)
Q Consensus 174 L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LI 221 (666)
+-+.+...+.+.+..|..+++..++|+|||...-+++..+.....++.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence 566778888888888888999999999999887777666654444433
No 215
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.11 E-value=9.6 Score=38.17 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=32.9
Q ss_pred HHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhc-CC------CCcEEEEeCCc
Q 005980 180 DGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCF-RD------VWPVLILTPSS 226 (666)
Q Consensus 180 ~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~-~~------~~~~LIv~P~s 226 (666)
.++..++. .|.-++|+.+.|+|||..++.++... .. .++++.+.-..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34555553 24456889999999999999888754 22 46788887664
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.63 E-value=12 Score=37.78 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=32.3
Q ss_pred HHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhc-C------CCCcEEEEeCCc
Q 005980 181 GVRFALQ----HGGRILLADEMGLGKTIQAIAVATCF-R------DVWPVLILTPSS 226 (666)
Q Consensus 181 ~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~-~------~~~~~LIv~P~s 226 (666)
++..++. .|.-++|+.+.|+|||..++.++... . ..++++.+.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4555553 23346889999999999999887753 2 256788887664
No 217
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.45 E-value=11 Score=37.70 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=24.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
+.+....|.|||.++..++..+. ..++++++.-
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45667899999999888877664 3567877753
No 218
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=78.50 E-value=6.2 Score=40.96 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=75.6
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCCCCceEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 541 (666)
..++++|--+.+-.+......+.++||.++....+..+.+.+.. .|+++..++|+++..+|....+.+..++ +.++
T Consensus 43 apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~-~~Ii 121 (414)
T 3oiy_A 43 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHIL 121 (414)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC-CSEE
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC-CCEE
Confidence 34678888755555555556889999999999998888888887 6889999999999988888888887764 2667
Q ss_pred EEecccccc---ccCcccCCEEEEecC
Q 005980 542 VLSMKAGGV---GLTLTAASTVIFAEL 565 (666)
Q Consensus 542 L~st~a~~~---GlnL~~a~~VI~~d~ 565 (666)
+.+...+.. -+++...+.||+=+.
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred EECHHHHHHHHHHhccccccEEEEeCh
Confidence 777655421 245567888887655
No 219
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.35 E-value=2 Score=42.17 Aligned_cols=25 Identities=44% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+++|..++|+|||..+-+++..+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC
Confidence 3589999999999998888877654
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=77.09 E-value=5 Score=38.13 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=28.5
Q ss_pred cCCCeeeecCCCCcHHHHHHHHH--HhcCCCCcEEEEeCCcchHH
Q 005980 188 HGGRILLADEMGLGKTIQAIAVA--TCFRDVWPVLILTPSSLRLH 230 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~--~~~~~~~~~LIv~P~sl~~q 230 (666)
.|.-+.|..+.|+|||..+..++ .........+++.-.....+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD 73 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH
Confidence 45566788899999998877666 33244566777765544333
No 221
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=77.07 E-value=2 Score=46.10 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
.+++|..++|+|||..+-+++.... .+++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 3589999999999999888877654 44544443
No 222
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.99 E-value=39 Score=33.44 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=34.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
|.-++|+..+|+|||.-++.++... ....+++++..-.-..+....+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH
Confidence 4457999999999999988877544 33478999987644444444443
No 223
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.86 E-value=2.2 Score=42.77 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=20.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
+..++|..++|+|||..|+.++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 334689999999999999988775
No 224
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.05 E-value=1.7 Score=49.86 Aligned_cols=25 Identities=44% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+.+++|..+.|+|||..|-+++..+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5578999999999999988887764
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.92 E-value=2.9 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=26.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-C-CCcEEEEe
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-D-VWPVLILT 223 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~-~~~~LIv~ 223 (666)
+.+++|..++|+|||..|.+++..+. . ..+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56789999999999999988887654 3 34555554
No 226
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.68 E-value=14 Score=36.40 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=24.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
+.+....|.|||..+..++..+. ..++++++.-
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 44567899999999888877664 3567877753
No 227
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=75.49 E-value=11 Score=30.27 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=44.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 488 KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
-++||+.....+..|...++..|++++.+......+.|.+-++.|....
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999999997643
No 228
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.85 E-value=10 Score=46.66 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=58.7
Q ss_pred HHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Q 005980 181 GVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQLG 254 (666)
Q Consensus 181 ~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~~ 254 (666)
.+..++. .|.-++|+.++|+|||..|+.++.... ...+++++.-.....+-. .+.++++..++.+.
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~---A~~lGvd~~~L~i~----- 790 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS----- 790 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEE-----
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHH---HHHcCCChhheEEe-----
Confidence 4555553 355678999999999999998877553 456888887664444432 34444433222111
Q ss_pred CCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHHH-HHhcCCccEEEEcCccccC
Q 005980 255 GSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQN-ILMSSNFKIVIADESHFLK 310 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~~-~l~~~~~~~vIiDEaH~~k 310 (666)
. -.+.+.+..... ......+++||||+.+.+.
T Consensus 791 ----------~--------------~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 791 ----------Q--------------PDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ----------C--------------CSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ----------c--------------CCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 0 012233332222 2335689999999999886
No 229
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.48 E-value=3.3 Score=44.42 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcE
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPV 219 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~ 219 (666)
-++.+..++..++.++|.+++|+|||..|-+++..+....++
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f 71 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAF 71 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEE
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHH
Confidence 344455555567899999999999999999988877544443
No 230
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.99 E-value=19 Score=37.20 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=29.8
Q ss_pred HHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhc-C------CCCcEEEEeCCc
Q 005980 181 GVRFALQ----HGGRILLADEMGLGKTIQAIAVATCF-R------DVWPVLILTPSS 226 (666)
Q Consensus 181 ~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~-~------~~~~~LIv~P~s 226 (666)
.+..++. .|.-+.|+.+.|+|||..+..++... . ..++++++.-..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4555552 24446788999999999888655332 2 245688887654
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.25 E-value=3.1 Score=41.90 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++.+...+..+++++|.+++|+|||..|-+++..+.
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34455555555578999999999999999988888764
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.10 E-value=36 Score=36.24 Aligned_cols=46 Identities=13% Similarity=-0.059 Sum_probs=33.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-C-CCcEEEEeCCcchHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-D-VWPVLILTPSSLRLHWAAM 234 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~-~~~~LIv~P~sl~~qW~~e 234 (666)
|.-++|+..+|+|||..++.++.... . ..+++++.--.-..+....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence 44478999999999999998887654 3 5689999876444444443
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.75 E-value=34 Score=35.90 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=37.2
Q ss_pred HHHHHH---HcCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHH
Q 005980 181 GVRFAL---QHGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMI 235 (666)
Q Consensus 181 ~v~~~~---~~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~ 235 (666)
++..++ ..|.-++|+..+|+|||.-++.++... ....+++++..-.-..+....+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHH
Confidence 344454 334457999999999999998877654 2367899998764444444443
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.95 E-value=18 Score=33.61 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=25.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC-------CCcEEEEeCCc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD-------VWPVLILTPSS 226 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~-------~~~~LIv~P~s 226 (666)
|.-+.|..+.|+|||..+..++..+.. .+..+.+....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 444677788999999988877764322 44566666543
No 235
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.64 E-value=17 Score=36.25 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=32.0
Q ss_pred HHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhc--C-----------CC----CcEEEEeCCc
Q 005980 180 DGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCF--R-----------DV----WPVLILTPSS 226 (666)
Q Consensus 180 ~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~--~-----------~~----~~~LIv~P~s 226 (666)
.++..++. .|.-++|+.+.|+|||..++.++... . .. ++++.+.-..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 35555553 23346889999999999999887642 1 12 5788887664
No 236
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=70.41 E-value=11 Score=44.87 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=77.9
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCCCCceEE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA 541 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~ 541 (666)
..++++|-.+.+-.+......+.++||.+..+..+..+.+.+.. .|+++..++|+++..+|....+.+..+. +.++
T Consensus 100 ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-~~Il 178 (1104)
T 4ddu_A 100 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHIL 178 (1104)
T ss_dssp CSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC-CSEE
T ss_pred eCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC-CCEE
Confidence 44678898877666666667899999999999999999998888 5789999999999988888899998874 3566
Q ss_pred EEecccccc---ccCcccCCEEEEecC
Q 005980 542 VLSMKAGGV---GLTLTAASTVIFAEL 565 (666)
Q Consensus 542 L~st~a~~~---GlnL~~a~~VI~~d~ 565 (666)
+.+...+-. -+++...+.||+=+.
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred EECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 666654421 144567888888655
No 237
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=70.15 E-value=13 Score=44.35 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=75.8
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCceE
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDVKA 540 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 540 (666)
..++++|-...+..+......|.+++|.++....+....+.+.+ .++++..++|..+..++...++....+. +.+
T Consensus 631 ~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~-~dI 709 (1151)
T 2eyq_A 631 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK-IDI 709 (1151)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC-CSE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC-CCE
Confidence 45678898776655555567889999999998877766666553 4688999999999999999999988875 356
Q ss_pred EEEeccccccccCcccCCEEEEecCC
Q 005980 541 AVLSMKAGGVGLTLTAASTVIFAELS 566 (666)
Q Consensus 541 ~L~st~a~~~GlnL~~a~~VI~~d~~ 566 (666)
++.+.......+++...+.||+=+-+
T Consensus 710 vV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 710 LIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp EEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EEECHHHHhCCccccccceEEEechH
Confidence 66666666666777777777765543
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.47 E-value=38 Score=35.35 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC--CCcEEEEeCC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD--VWPVLILTPS 225 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~--~~~~LIv~P~ 225 (666)
.++++...|.|||.++..++.++.. ..++++|.-.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3556678999999999999887753 5678877643
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.82 E-value=15 Score=39.30 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=26.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
.++++...|+|||.++..++.++.. ..++++|..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3566777999999999988877754 467888876
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.58 E-value=0.6 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.+++|..++|+|||..|-+++..+.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999988887763
No 241
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=66.00 E-value=3.4 Score=38.08 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 180 DGVRFALQHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 180 ~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|.+-+..+..++|...+|+|||..+-.++..+.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34555556666788999999999999988887663
No 242
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.64 E-value=26 Score=43.28 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=59.9
Q ss_pred HHHHHHHH-----cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCcchHHHHHHHHHHhcCCCCcEEEEEecC
Q 005980 180 DGVRFALQ-----HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSSLRLHWAAMIQQWLNIPPSEIVVVLSQL 253 (666)
Q Consensus 180 ~~v~~~~~-----~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~sl~~qW~~e~~~~~~~~~~~i~~~~~~~ 253 (666)
.++..++. .|.-++|+.++|+|||..|+.++... ....+++++.-..-..+- ..+.++++..++.+..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~--- 442 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQ--- 442 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEEC---
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcC---
Confidence 45666664 34457899999999999999887654 346788888766433332 1334454433322110
Q ss_pred CCCCccceeEEecCCCCCCCCCCcEEEEeHHHHHHHH-HHHhcCCccEEEEcCccccCC
Q 005980 254 GGSNRSGFTIVSSNTKRNIPLDGLFNIISYDVVLKLQ-NILMSSNFKIVIADESHFLKN 311 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~sy~~l~~~~-~~l~~~~~~~vIiDEaH~~kn 311 (666)
..+.+.+.... .......+++||+|....+..
T Consensus 443 --------------------------~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~ 475 (1706)
T 3cmw_A 443 --------------------------PDTGEQALEICDALARSGAVDVIVVDSVAALTP 475 (1706)
T ss_dssp --------------------------CSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred --------------------------CCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhc
Confidence 01222332222 223456899999999998863
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=64.73 E-value=41 Score=34.99 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=25.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+.++...|+|||.++..++..+.. .++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 456688999999999888887743 567777764
No 244
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=64.60 E-value=7.1 Score=47.05 Aligned_cols=66 Identities=24% Similarity=0.184 Sum_probs=45.5
Q ss_pred hhcCchHHHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhc-C------CCCcEEEEeCC-cchHHHHHHHHHHh
Q 005980 171 ESKLLPFQRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCF-R------DVWPVLILTPS-SLRLHWAAMIQQWL 239 (666)
Q Consensus 171 ~~~L~p~Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~-~------~~~~~LIv~P~-sl~~qW~~e~~~~~ 239 (666)
...|.|-|.++|.. .++.+++....|+|||.+.+.-+..+ . ....+|+++++ .......+.+...+
T Consensus 8 ~~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 35789999999975 35678888889999999877643332 2 23469999999 44555555555543
No 245
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.95 E-value=5.5 Score=37.04 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=21.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.++..++|+|||..|.+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=63.64 E-value=9 Score=36.24 Aligned_cols=48 Identities=21% Similarity=0.110 Sum_probs=33.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh--cCCCCcEEEEeCCcchHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC--FRDVWPVLILTPSSLRLHWAAMIQ 236 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~--~~~~~~~LIv~P~sl~~qW~~e~~ 236 (666)
|.-++++.++|+|||..++.++.. .....+++++.-..-..+....+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHH
Confidence 334689999999999998877653 344678999887644444444433
No 247
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=61.61 E-value=5 Score=37.95 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=28.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE-e-CCcchHHHH
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLIL-T-PSSLRLHWA 232 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv-~-P~sl~~qW~ 232 (666)
++++....|.|||..|+.++..+.. ...++++ + |-.-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 4688899999999999998887644 3456544 3 323444453
No 248
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.11 E-value=12 Score=38.23 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 180 DGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 180 ~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
+.+.+.+..|..++|..++|+|||-..-+++..+......+.+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 6677788888889999999999998777776666543334433
No 249
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=59.74 E-value=81 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=23.8
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+....-|.|||.+++.++..+.. ..++|+|=-
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 33456799999999998887743 457888853
No 250
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=59.45 E-value=40 Score=27.32 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 475 VLDYLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
+.+.+.++. ..++++||+. +-........+|...|+.|..++=......+..+.+... ...+..+++.
T Consensus 7 ~~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~ 80 (109)
T 3ipz_A 7 LKDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIG 80 (109)
T ss_dssp HHHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEET
T ss_pred HHHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence 445555554 5678999987 578899999999999999988876555555555554432 2333344443
No 251
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=57.95 E-value=23 Score=28.10 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=42.0
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCC---CCceEEEEeccccccccCcccCCEEE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK---DDVKAAVLSMKAGGVGLTLTAASTVI 561 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~---~~~~v~L~st~a~~~GlnL~~a~~VI 561 (666)
.|..+..+......+..+ ......++.++-..+...-.++++..+.. .++.+++++...-.. ....+...-
T Consensus 24 ~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 455665554443333333 23345666666655443334444444332 334455555433222 221111222
Q ss_pred EecCCCCcchhhhhhhhhhc
Q 005980 562 FAELSWTPGDLIQAEDRAHR 581 (666)
Q Consensus 562 ~~d~~wnp~~~~Qa~gR~~R 581 (666)
++.-|.++..+.+++.++.+
T Consensus 98 ~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTCC
T ss_pred hccCCCCHHHHHHHHHHHhc
Confidence 33456666666666666543
No 252
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=57.41 E-value=60 Score=26.43 Aligned_cols=103 Identities=13% Similarity=0.022 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCC---CCceEEEEeccccccccC
Q 005980 477 DYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEK---DDVKAAVLSMKAGGVGLT 553 (666)
Q Consensus 477 ~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~---~~~~v~L~st~a~~~Gln 553 (666)
+.+...+..+..+..+....+.+.. +....+.++.++-.++...-.++++..+.. +++.+++++...-..-..
T Consensus 18 ~~l~~~l~~~~~v~~~~~~~~a~~~----l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~ 93 (133)
T 3nhm_A 18 ETLRLLLSGEFDCTTAADGASGLQQ----ALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGP 93 (133)
T ss_dssp HHHHHHHTTTSEEEEESSHHHHHHH----HHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----
T ss_pred HHHHHHHhCCcEEEEECCHHHHHHH----HhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHH
Confidence 3334444456666666554444433 344567788888776655555666655542 345666666543222122
Q ss_pred cccCCEEEEecCCCCcchhhhhhhhhhccC
Q 005980 554 LTAASTVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 554 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
.-.+...-++.-|.++..+.+++.++.+.+
T Consensus 94 ~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 94 ADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 222222223445778888888888776543
No 253
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.48 E-value=5.1 Score=38.71 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..+++|..++|+|||..|-+++..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45689999999999999998887653
No 254
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.19 E-value=9.6 Score=35.52 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.1
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+.+...|.|||.+++.++..+.. ..++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 45567899999999999887743 568888765
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.62 E-value=83 Score=30.78 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=24.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
+++....|.|||..+..++..+. ..++++++.-
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45667899999998888777663 3567777754
No 256
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.22 E-value=65 Score=32.38 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHHHHHHH----cCCCeeeecCCCCcHHHHHHHHHHhcCC-------CCcEEEEeCCc
Q 005980 180 DGVRFALQ----HGGRILLADEMGLGKTIQAIAVATCFRD-------VWPVLILTPSS 226 (666)
Q Consensus 180 ~~v~~~~~----~~~~~iLad~~GlGKTi~ala~~~~~~~-------~~~~LIv~P~s 226 (666)
.++..++. .|.-+.|..+.|+|||..+..++..... .++++.|.-..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35555553 2334578889999999998887776521 25667766543
No 257
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=54.01 E-value=12 Score=44.90 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=36.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc----CCCCcEEEEeCCcchHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF----RDVWPVLILTPSSLRLHWAAMIQQWLN 240 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~----~~~~~~LIv~P~sl~~qW~~e~~~~~~ 240 (666)
++|+|. .|+|||.+++.-+.++ ....++|++||.....+-+..+.+.++
T Consensus 4 ~lV~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 4 EFLVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 356776 9999999988766544 224789999999988776666665554
No 258
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=53.68 E-value=5.4 Score=36.94 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+.+++|..++|+|||-.|+.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 5567899999999999999987753
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=53.19 E-value=7.6 Score=34.93 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578889999999999998887663
No 260
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=52.97 E-value=55 Score=26.65 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 475 VLDYLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
+.+.+.+++ +.++|+||+. .-........+|...|+.|..++=......|..+.+.. ....+.++.+.
T Consensus 5 ~~~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~-g~~tvP~ifi~ 78 (111)
T 3zyw_A 5 LNLRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYS-SWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH-TCCSSCEEEET
T ss_pred HHHHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHH-CCCCCCEEEEC
Confidence 344555553 5779999984 66778999999999999998888666655565554433 22333344443
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.97 E-value=16 Score=36.79 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 178 QRDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
..+.+.+.+..|..+.+..++|+|||...-+++..+......+.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 456677778888888999999999998666665555433333333
No 262
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.57 E-value=12 Score=37.62 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcC-------CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQHG-------GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~~~-------~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...+.+...+..+ ..++|..+.|+|||..+-+++..+.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556666665432 5689999999999998888777653
No 263
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=51.88 E-value=12 Score=34.76 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.0
Q ss_pred eeecCCCCcHHHHHHHHHHhcCCCCcEEEEe--CCcchHHHH
Q 005980 193 LLADEMGLGKTIQAIAVATCFRDVWPVLILT--PSSLRLHWA 232 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~~~~~LIv~--P~sl~~qW~ 232 (666)
+....-|.|||..++.++..+...+++|+|= |..-...|.
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHh
Confidence 4456679999999999988775434888863 544444554
No 264
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=51.71 E-value=14 Score=38.67 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
.++++|..++|+|||..|-+++..+. .+++.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~--~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC--CCceeecc
Confidence 45799999999999999999888764 45555543
No 265
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=51.22 E-value=49 Score=34.28 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=67.5
Q ss_pred cCCccccHHHHHHHHHHHH-HcCCEEEEEeccHHHHHHHHHHHHhC-Cc---eEEEEECCCCHHHHHHHHHHhcCCCCce
Q 005980 465 TDSAEAKIPAVLDYLETVI-EAGCKFLIFAHHQPMLDAIHQLFLKK-KV---HCIRIDGGTPPASRQALVTEFQEKDDVK 539 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~-~~g~KvlVF~~~~~~~~~l~~~L~~~-g~---~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 539 (666)
..++++|--..+-.+.... ..+.++||.+.....+....+.+.+. +. .+..++|+.+..++...... ..
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~ 103 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AK 103 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CS
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CC
Confidence 4467788877766665544 36889999999988888777777664 55 89999999987776555432 25
Q ss_pred EEEEecccccc-----ccCcccCCEEEEecCC
Q 005980 540 AAVLSMKAGGV-----GLTLTAASTVIFAELS 566 (666)
Q Consensus 540 v~L~st~a~~~-----GlnL~~a~~VI~~d~~ 566 (666)
+++++...+.. .+.+...+.||+=+.+
T Consensus 104 ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 104 VIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 67777665432 3556777888876655
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=51.02 E-value=10 Score=34.20 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=23.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P 224 (666)
++|...+|+|||.++-.++..+...+..+.+.|
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 567888999999999888887754333333334
No 267
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.92 E-value=8 Score=38.98 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-++|..+||+|||-.++.++..+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999999988653
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=50.53 E-value=26 Score=36.47 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=32.5
Q ss_pred cCchHHHHHHHHHHHc-CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 173 KLLPFQRDGVRFALQH-GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 173 ~L~p~Q~~~v~~~~~~-~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
.+.+.+...+..++.. ++-+++..++|+|||...-+++..+.. .+.++++
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 3455566667666543 334678999999999887777766543 3444443
No 269
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=50.50 E-value=50 Score=27.42 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCce---EEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 475 VLDYLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVH---CIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
+.+.+..++ +.++|+||+. +-.......+.|...|+. |..++=......|+.+.+.. ....+..+.+.
T Consensus 5 ~~~~v~~~i-~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s-g~~tvP~vfI~ 81 (121)
T 3gx8_A 5 IRKAIEDAI-ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS-EWPTIPQLYVN 81 (121)
T ss_dssp HHHHHHHHH-HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH-TCCSSCEEEET
T ss_pred HHHHHHHHh-ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh-CCCCCCeEEEC
Confidence 345555554 4678999988 577889999999999998 88888666666666555443 23333344443
No 270
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=49.86 E-value=14 Score=36.26 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-cCCCeeee---cCCCCcHHHHHHHHHHhcC-CCCcEEEE
Q 005980 178 QRDGVRFALQ-HGGRILLA---DEMGLGKTIQAIAVATCFR-DVWPVLIL 222 (666)
Q Consensus 178 Q~~~v~~~~~-~~~~~iLa---d~~GlGKTi~ala~~~~~~-~~~~~LIv 222 (666)
|...+..++. .+..+.++ .--|.|||.+|+.++..+. ...++|+|
T Consensus 22 ~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 22 ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 4444444443 33344444 3679999999998888764 35678876
No 271
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=49.81 E-value=7.9 Score=36.65 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+|-+-++|.|||.++++++..+.+ ..++...=|
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 356677999999999999988754 334444433
No 272
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=49.71 E-value=42 Score=34.12 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=24.1
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.+.--|.|||..|+.++..+.. ..++|+|=
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44567899999999988887643 56888885
No 273
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=48.63 E-value=8.6 Score=36.79 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=23.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
.|.+-++|.|||+++++++..+.+ ..++...=
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 356678999999999999988754 33454443
No 274
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.03 E-value=94 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=23.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
-+.+..+.|+|||..+-.++..+. ..+.++++.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456778899999988776666554 345666664
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=48.01 E-value=23 Score=35.71 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRLHWAA 233 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~qW~~ 233 (666)
|.=++|+..+|+|||.-++.++.... ...+++++..-.-..+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 44578999999999999887776542 5678999987644444333
No 276
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.88 E-value=11 Score=36.57 Aligned_cols=23 Identities=35% Similarity=0.231 Sum_probs=20.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+++|..++|+|||..|.+++..+
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 58999999999999999998864
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=47.84 E-value=1.2e+02 Score=32.09 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=23.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
+.|....|+|||..+-.++..+. ..+.++|..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 45778899999988777766654 356777763
No 278
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=47.48 E-value=42 Score=39.57 Aligned_cols=97 Identities=9% Similarity=0.043 Sum_probs=69.5
Q ss_pred cCCccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHh----CCc----eEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 465 TDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLK----KKV----HCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~----~g~----~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
..++++|--..+-.+..+...+.++||.++....+..+.+.+.. .++ .+..++|+++..++.+..+.+.. .
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~ 156 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-F 156 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-C
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-C
Confidence 34678888766666666667889999999999887776666653 466 89999999998888778887776 3
Q ss_pred CceEEEEeccccccccC-cccCCEEEEec
Q 005980 537 DVKAAVLSMKAGGVGLT-LTAASTVIFAE 564 (666)
Q Consensus 537 ~~~v~L~st~a~~~Gln-L~~a~~VI~~d 564 (666)
.+++.+...+-.-+. |...+.||+=+
T Consensus 157 --~IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 157 --KIVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp --SEEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred --CEEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 666776654433332 55666777643
No 279
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.34 E-value=13 Score=39.31 Aligned_cols=38 Identities=26% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH--cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 177 FQRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 177 ~Q~~~v~~~~~--~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...+.+..++. ...++||.+++|+|||..|-+++..+.
T Consensus 187 ~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44444444443 345789999999999999998888763
No 280
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=47.34 E-value=13 Score=34.82 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=24.7
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+.+..-|.|||.+|+.++..+.. ..++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 44567899999999999887743 568888854
No 281
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=47.06 E-value=82 Score=29.16 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=56.2
Q ss_pred cCCccccHHHHHHH-HHHHH------HcCCEEEEEeccHHHHHHHHHHHHhC----CceEEEEECCCCHHHHHHHHHHhc
Q 005980 465 TDSAEAKIPAVLDY-LETVI------EAGCKFLIFAHHQPMLDAIHQLFLKK----KVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~-l~~~~------~~g~KvlVF~~~~~~~~~l~~~L~~~----g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
..++++|--+..-. +..+. ..+.++||.+.....+..+.+.+... ++.+..++|+.+.......+ .
T Consensus 69 a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 145 (236)
T 2pl3_A 69 AKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N 145 (236)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T
T ss_pred eCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C
Confidence 34677887653332 33322 24778999999988877777766653 57888999987754443332 2
Q ss_pred CCCCceEEEEeccccc------cccCcccCCEEEEec
Q 005980 534 EKDDVKAAVLSMKAGG------VGLTLTAASTVIFAE 564 (666)
Q Consensus 534 ~~~~~~v~L~st~a~~------~GlnL~~a~~VI~~d 564 (666)
++.+++.+...+- ..+++...+.||+=+
T Consensus 146 ---~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 146 ---NINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp ---TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred ---CCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 2356666654431 135566677777644
No 282
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=46.89 E-value=14 Score=35.56 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCe--eeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 178 QRDGVRFALQHGGRI--LLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 178 Q~~~v~~~~~~~~~~--iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
|..+...+-.+..++ +...--|.|||.+|+.++..+....++|+|
T Consensus 15 ~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~Vlli 61 (267)
T 3k9g_A 15 QTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLI 61 (267)
T ss_dssp -----------CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred hhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEE
Confidence 445555554444443 345678899999999888877656678888
No 283
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=46.51 E-value=86 Score=28.57 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCccccHHHHHHHHHHHHH---cCCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 466 DSAEAKIPAVLDYLETVIE---AGCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~---~g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
.++++|--...-.+...+. .+.++||.+.....+..+.+.+.+. ++++..++|+.+..+....+.. +.
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~- 134 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC- 134 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SC-
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CC-
Confidence 4577787655444444322 2348999999988888777766553 7889999999886655544432 22
Q ss_pred ceEEEEecccc-----ccccCcccCCEEEEecCC
Q 005980 538 VKAAVLSMKAG-----GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 538 ~~v~L~st~a~-----~~GlnL~~a~~VI~~d~~ 566 (666)
+.+++.+.... ...+++...+.+|+=|.+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 24555554433 234566777777775543
No 284
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=46.37 E-value=49 Score=26.82 Aligned_cols=94 Identities=15% Similarity=0.013 Sum_probs=51.6
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcC---CCCceEEEEeccccccccCc--ccCCE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQE---KDDVKAAVLSMKAGGVGLTL--TAAST 559 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~---~~~~~v~L~st~a~~~GlnL--~~a~~ 559 (666)
.|..+..+....+.++ .+....+.++.++-.++...-.++++..+. ...+.+++++...-..-... .+++.
T Consensus 26 ~g~~v~~~~~~~~a~~----~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALH----AMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHH----HHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHH----HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 3566665555444333 344566788888877765555566665554 34456666665433221111 12333
Q ss_pred EEEecCCCCcchhhhhhhhhhccCC
Q 005980 560 VIFAELSWTPGDLIQAEDRAHRIGQ 584 (666)
Q Consensus 560 VI~~d~~wnp~~~~Qa~gR~~R~Gq 584 (666)
++.-|.++..+.+++.+..+-+.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC----
T ss_pred --heeCCCCHHHHHHHHHHhhccCC
Confidence 44567788888888888876544
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.18 E-value=13 Score=33.08 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-++|...+|+|||..+=.++..+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 467889999999999988888764
No 286
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=45.84 E-value=10 Score=36.54 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=24.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
.|-+-++|.|||.++++++..+.+ ..++...=|
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 466778999999999999988754 334554433
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=45.56 E-value=14 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999988887653
No 288
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=45.38 E-value=10 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
|.++++..+.|+|||-.|++++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 567899999999999999998873
No 289
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.12 E-value=11 Score=37.93 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.0
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++++|..++|+|||..|-+++..+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 356799999999999999998888764
No 290
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=45.10 E-value=17 Score=34.90 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=27.1
Q ss_pred HHHHHHHHHc---CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 179 RDGVRFALQH---GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 179 ~~~v~~~~~~---~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
...+.+-+.. +..++|...+|+|||..+-.++..+.
T Consensus 35 l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445555555 77889999999999999888877553
No 291
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=45.08 E-value=97 Score=24.30 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=30.7
Q ss_pred hCCceEEEEECCCCHHHHHHHHHHhcC-CCCceEEEEeccccccccCcccCCEEEEecCCCCcchhhhhhhhhh
Q 005980 508 KKKVHCIRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAH 580 (666)
Q Consensus 508 ~~g~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~v~L~st~a~~~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 580 (666)
.....++.++-.++...-.++++..+. .+.+.+++++...... .....+...-++.-|.++..+.+++.++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 344566666655543333334443332 1233455554332211 22111111122334556666666665543
No 292
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=44.92 E-value=1e+02 Score=28.95 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCccccHHHHH-HHHHHHHHc--CCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCc
Q 005980 466 DSAEAKIPAVL-DYLETVIEA--GCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDV 538 (666)
Q Consensus 466 ~~~~~Kl~~l~-~~l~~~~~~--g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~ 538 (666)
.++++|--+.. -.+..+... +.++||.+.....+..+.+.+.. .++.+..+.|+.+..+....+ ..+.
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~-- 162 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AKKP-- 162 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HTCC--
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cCCC--
Confidence 46778876533 333333333 45799999998877766665544 388899999998765443333 2333
Q ss_pred eEEEEecccc------ccccCcccCCEEEEecCC
Q 005980 539 KAAVLSMKAG------GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 539 ~v~L~st~a~------~~GlnL~~a~~VI~~d~~ 566 (666)
.+++.+...+ ..++++...+.||+=+.+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 5556554433 234667778888875433
No 293
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=44.71 E-value=17 Score=34.85 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=24.6
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.+..-|.|||.+|+.++..+.. ..++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45677899999999998887743 56888885
No 294
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=44.70 E-value=19 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.3
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC--CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD--VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~--~~~~LIv~ 223 (666)
+....-|.|||.+|+.++..+.. ..++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 44566799999999999888754 56788884
No 295
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=44.39 E-value=64 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=13.1
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCce
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKVH 512 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~~ 512 (666)
+.+++|..........+...|...|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~ 32 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQ 32 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcE
Confidence 344555555555555555555544443
No 296
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=43.74 E-value=16 Score=35.12 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=24.0
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+....-|.|||.+|+.++..+.. ..++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567899999999998887743 56888875
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.72 E-value=13 Score=34.54 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44578889999999999988888764
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.35 E-value=13 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.2
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++..++|...+|+|||.++-.++..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455678889999999999988887653
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.15 E-value=14 Score=35.55 Aligned_cols=23 Identities=30% Similarity=0.151 Sum_probs=19.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||..|-.++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 57888999999999998887653
No 300
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=43.06 E-value=4.7 Score=22.51 Aligned_cols=15 Identities=47% Similarity=0.871 Sum_probs=12.4
Q ss_pred cccCCCHHHHHHHHH
Q 005980 5 DEWEFSAEELDFLER 19 (666)
Q Consensus 5 ~~~~~~~e~~~~~~~ 19 (666)
|+|+|+.|-...+|+
T Consensus 1 dewel~kenvqplrq 15 (26)
T 4ggd_C 1 DEWELSKENVQPLRQ 15 (26)
T ss_pred Cccccchhccchhhc
Confidence 689999998777765
No 301
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=43.06 E-value=1.4e+02 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=11.8
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCc
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKV 511 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~ 511 (666)
.++||..........+...|...|+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~ 32 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAGF 32 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCe
Confidence 3444444444444444444444443
No 302
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=43.05 E-value=14 Score=36.74 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS 226 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s 226 (666)
++|+.++|+|||-.++.++..+. .-||...+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~----~~iis~Ds 36 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLN----GEVISGDS 36 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTT----EEEEECCG
T ss_pred EEEECCCcCCHHHHHHHHHHhCc----cceeecCc
Confidence 57889999999999999987653 44555444
No 303
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=42.98 E-value=17 Score=34.64 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.9
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.+..-|.|||.+|+.++..+.. ..++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44567899999999998887743 56788874
No 304
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=42.87 E-value=17 Score=36.36 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~ 225 (666)
++....-|.|||.+|.+++..+. ...++|+|-..
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 35667799999999998888764 35678888643
No 305
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=42.64 E-value=21 Score=35.82 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=25.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
++.....|.|||.+|.+++..+.. ..++|+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456788899999999988887643 56788874
No 306
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.35 E-value=15 Score=36.76 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|+.+||+|||-.+..++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 468899999999999999988754
No 307
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=41.99 E-value=16 Score=35.16 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=22.1
Q ss_pred ecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 195 ADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+..-|.|||.+|+.++..+.. ..++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 456799999999998887743 5578886
No 308
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=41.85 E-value=1.3e+02 Score=28.04 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=59.4
Q ss_pred cCCccccHHH-HHHHHHHHH-------HcCCEEEEEeccHHHHHHHHHHHH----hCCceEEEEECCCCHHHHHHHHHHh
Q 005980 465 TDSAEAKIPA-VLDYLETVI-------EAGCKFLIFAHHQPMLDAIHQLFL----KKKVHCIRIDGGTPPASRQALVTEF 532 (666)
Q Consensus 465 ~~~~~~Kl~~-l~~~l~~~~-------~~g~KvlVF~~~~~~~~~l~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~F 532 (666)
..++++|--+ ++-.+..+. ..+.++||.+.....+..+.+.+. ..++.+..++|+.+.......+.
T Consensus 73 apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 150 (242)
T 3fe2_A 73 AQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE-- 150 (242)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH--
T ss_pred CCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc--
Confidence 3467788755 334444433 236789999999887766655544 45889999999998766554443
Q ss_pred cCCCCceEEEEeccccc-----cccCcccCCEEEEec
Q 005980 533 QEKDDVKAAVLSMKAGG-----VGLTLTAASTVIFAE 564 (666)
Q Consensus 533 ~~~~~~~v~L~st~a~~-----~GlnL~~a~~VI~~d 564 (666)
.+. .+++.+...+. ..+++...+.+|+=+
T Consensus 151 -~~~--~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 151 -RGV--EICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp -HCC--SEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred -CCC--CEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 233 55565553331 234677777777744
No 309
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=41.65 E-value=30 Score=28.89 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHcC-CEEEEEec-cHHHHHHHHHHHHhCCceEEEEECCCC
Q 005980 471 KIPAVLDYLETVIEAG-CKFLIFAH-HQPMLDAIHQLFLKKKVHCIRIDGGTP 521 (666)
Q Consensus 471 Kl~~l~~~l~~~~~~g-~KvlVF~~-~~~~~~~l~~~L~~~g~~~~~i~G~~~ 521 (666)
++..+.+.+..+ ..+ .++||||. .-.........|...|+++..++|+..
T Consensus 74 ~~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 445555555554 455 89999994 545566788889999999999999865
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=41.63 E-value=16 Score=32.14 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=18.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||.++-.++..+.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57788899999999888877653
No 311
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=41.55 E-value=16 Score=36.31 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
++|+.++|+|||-.|..++..+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999998875
No 312
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=41.23 E-value=19 Score=36.45 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=25.0
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
++....-|.|||.+|.+++..+. ...++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45667899999999998888764 356788886
No 313
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.84 E-value=22 Score=34.84 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCC--CCcEEEEeCC
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRD--VWPVLILTPS 225 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~--~~~~LIv~P~ 225 (666)
.+..-+..|.-++|+.+.|+|||..+..++..+.. ..+++++...
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 34333455656778899999999988777765532 3378887654
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=40.84 E-value=27 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.5
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
++|...+|+|||.++-.++..+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 467778999999999888887643
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=40.77 E-value=16 Score=32.78 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRD 215 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~ 215 (666)
.-++|...+|+|||.++-.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35688899999999999888886653
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=40.53 E-value=22 Score=32.23 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVLI 221 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LI 221 (666)
+..++|...+|+|||.++=.++..+ ...+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l-~g~~~~~ 35 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI-PANTIKY 35 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS-CGGGEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-CCCceEE
Confidence 4456788899999999998888876 2234443
No 317
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=40.44 E-value=69 Score=29.62 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=60.2
Q ss_pred cCCccccHHH-HHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 465 TDSAEAKIPA-VLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 465 ~~~~~~Kl~~-l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
..++++|--. ++-.+..+. ..+.++||.+.....+..+.+.+... ++++..++|+.+..++...+ +
T Consensus 68 a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--- 141 (230)
T 2oxc_A 68 AKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K--- 141 (230)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---
Confidence 3467788765 333444332 23579999999988888777777653 67889999998866554433 2
Q ss_pred CceEEEEecccc-----ccccCcccCCEEEEec
Q 005980 537 DVKAAVLSMKAG-----GVGLTLTAASTVIFAE 564 (666)
Q Consensus 537 ~~~v~L~st~a~-----~~GlnL~~a~~VI~~d 564 (666)
++.+++.+...+ ...+++...+.+|+=|
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 235666665443 2245667777777744
No 318
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=40.18 E-value=76 Score=29.19 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCccccHHHH-HHHHHHHH--------HcCCEEEEEeccHHHHHHHHHHHHh---CCceEEEEECCCCHHHHHHHHHHhc
Q 005980 466 DSAEAKIPAV-LDYLETVI--------EAGCKFLIFAHHQPMLDAIHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 466 ~~~~~Kl~~l-~~~l~~~~--------~~g~KvlVF~~~~~~~~~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
.++++|--+. +-.+..+. ..+.++||.+.....+..+.+.+.. .++.+..+.|+.+..++.. .+.
T Consensus 65 pTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 141 (228)
T 3iuy_A 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS 141 (228)
T ss_dssp CTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH
T ss_pred CCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc
Confidence 4567776542 22232221 2577899999999988888887776 4778888888876544332 233
Q ss_pred CCCCceEEEEecccc-----ccccCcccCCEEEEec
Q 005980 534 EKDDVKAAVLSMKAG-----GVGLTLTAASTVIFAE 564 (666)
Q Consensus 534 ~~~~~~v~L~st~a~-----~~GlnL~~a~~VI~~d 564 (666)
.+. .+++.+.... ...+++...+.||+=|
T Consensus 142 ~~~--~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 142 KGV--DIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp SCC--SEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred CCC--CEEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 343 5555554433 2245667777777644
No 319
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=39.94 E-value=16 Score=34.33 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578889999999999999888764
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.73 E-value=17 Score=36.63 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-++|+.++|+|||-.|..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 367899999999999999988764
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=39.63 E-value=16 Score=32.87 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
-++|...+|+|||.++-.++..+.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 467888999999999988877663
No 322
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.42 E-value=1e+02 Score=25.28 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=32.3
Q ss_pred hCCceEEEEECCCCHHHHHHHHHHhcC---CCCceEEEEecccccccc--CcccCCEEEEecCCCCcchhhhhhhhhhc
Q 005980 508 KKKVHCIRIDGGTPPASRQALVTEFQE---KDDVKAAVLSMKAGGVGL--TLTAASTVIFAELSWTPGDLIQAEDRAHR 581 (666)
Q Consensus 508 ~~g~~~~~i~G~~~~~~R~~~i~~F~~---~~~~~v~L~st~a~~~Gl--nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R 581 (666)
...+.++.++-.++...-.++++..+. ..++.+++++...-..-. ....+...-++.-|.++..+.+++.++.+
T Consensus 48 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 344555666555544444445554443 223444444433211110 11122222233345566666666665554
No 323
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.38 E-value=1.2e+02 Score=22.80 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccH--HHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhc
Q 005980 473 PAVLDYLETVIEAGCKFLIFAHHQ--PMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 473 ~~l~~~l~~~~~~g~KvlVF~~~~--~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
+.+.+++..+..+|+..+||.+.. .........-++.|+.|-.+....+ ++-.+-++.|-
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdp-eeltqrvrefl 99 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDP-EELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCH-HHHHHHHHHHH
Confidence 456677777778999999998753 4456677777888999988876554 55555566663
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=39.27 E-value=17 Score=33.84 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678889999999999988888764
No 325
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=39.21 E-value=22 Score=35.05 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=22.3
Q ss_pred ecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 195 ADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
+...|.|||.+|+.++..+. ...++|+|-
T Consensus 111 s~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 44579999999998888764 356788884
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=39.11 E-value=18 Score=32.55 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
+..++|...+|+|||.++-.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 445789999999999998888776
No 327
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=39.03 E-value=26 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.6
Q ss_pred eeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 193 LLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.+...|.|||.+|+.++..+.. ..++|+|=
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 34456799999999998887744 56788883
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=38.91 E-value=21 Score=31.88 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.+|-.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 578889999999999988887654
No 329
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.86 E-value=46 Score=35.49 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=60.1
Q ss_pred cCCccccHHHHHHHHHHHHHc-----CCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCC
Q 005980 465 TDSAEAKIPAVLDYLETVIEA-----GCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEK 535 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~-----g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~ 535 (666)
..++++|--...-.+...+.. +.++||.++....+..+.+.+.. .++.+..++|+.+...+...+. .+
T Consensus 26 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~ 102 (555)
T 3tbk_A 26 APTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII---ED 102 (555)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH---HH
T ss_pred eCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh---cC
Confidence 346788887655555554444 78999999998766655555544 4899999999987655433222 12
Q ss_pred CCceEEEEeccccccc-----c-CcccCCEEEEec
Q 005980 536 DDVKAAVLSMKAGGVG-----L-TLTAASTVIFAE 564 (666)
Q Consensus 536 ~~~~v~L~st~a~~~G-----l-nL~~a~~VI~~d 564 (666)
. .+++.+...+..- + .+...+.||+=+
T Consensus 103 ~--~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 135 (555)
T 3tbk_A 103 N--DIIILTPQILVNNLNNGAIPSLSVFTLMIFDE 135 (555)
T ss_dssp C--SEEEECHHHHHHHHHTSSSCCGGGCSEEEETT
T ss_pred C--CEEEECHHHHHHHHhcCcccccccCCEEEEEC
Confidence 2 5666665544221 2 556677777744
No 330
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=38.58 E-value=19 Score=31.57 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.++-.++..+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888899999999988887654
No 331
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=38.47 E-value=22 Score=35.97 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred HHHcCCC--eeeecCCCCcHHHHHHHHHHhc
Q 005980 185 ALQHGGR--ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 185 ~~~~~~~--~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+..|.. ++|...+|+|||..+-+++..+
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444 7889999999999887777654
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.39 E-value=20 Score=31.81 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.3
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||..+-.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578889999999999988887654
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=38.13 E-value=25 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=24.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
-++|.+.+|+|||.+|-.++..+.. ..+++++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4678899999999999888876532 34555444
No 334
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=37.92 E-value=28 Score=34.99 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=25.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
+++..--|.|||.+|.+++..+.. ..++|+|--
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 455677899999999998887754 467887753
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=37.76 E-value=29 Score=33.01 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.4
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
+++....|+|||..+..++..+....+++||.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 56778899999999988887666455788776
No 336
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=37.61 E-value=1.1e+02 Score=25.23 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCce-EEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 478 YLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 478 ~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
.+.+++ ..++|+||+. +-.......+.|...|+. |..++=....+.++.+.+.. ....+.++++.
T Consensus 12 ~v~~~i-~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~t-g~~tvP~vfI~ 83 (118)
T 2wem_A 12 QLDALV-KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS-NWPTIPQVYLN 83 (118)
T ss_dssp HHHHHH-HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHH-TCCSSCEEEET
T ss_pred HHHHHh-ccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHh-CCCCcCeEEEC
Confidence 344443 3468999988 577899999999999995 88888766666666554433 23333444444
No 337
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=37.54 E-value=1.2e+02 Score=25.74 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHh
Q 005980 475 VLDYLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEF 532 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 532 (666)
+.+.+.+.... .+++||+. .-.....+..+|...|+.|..++=......+..+.+..
T Consensus 24 ~~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 24 TIEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 44555555433 47888876 56788999999999999999998776666666665544
No 338
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=37.51 E-value=2.3e+02 Score=26.68 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=59.3
Q ss_pred cCCccccHHH-HHHHHHHHHH------cCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhc
Q 005980 465 TDSAEAKIPA-VLDYLETVIE------AGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 465 ~~~~~~Kl~~-l~~~l~~~~~------~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
..++++|--+ ++-.+..+.. .+.++||.+..+..+..+.+.+.+ .+..+..+.|+.+.......+ .
T Consensus 98 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 174 (262)
T 3ly5_A 98 AKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---G 174 (262)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---H
T ss_pred ccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---c
Confidence 3467788765 3334443332 578899999998887776666655 477888899988755443333 3
Q ss_pred CCCCceEEEEecccc------ccccCcccCCEEEEec
Q 005980 534 EKDDVKAAVLSMKAG------GVGLTLTAASTVIFAE 564 (666)
Q Consensus 534 ~~~~~~v~L~st~a~------~~GlnL~~a~~VI~~d 564 (666)
.+. .+++.+...+ ..++++...+.||+=+
T Consensus 175 ~~~--~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 175 NGI--NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp HCC--SEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred CCC--CEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 333 4555553221 2346777788887744
No 339
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=37.51 E-value=23 Score=34.33 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.3
Q ss_pred cCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 196 DEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 196 d~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
...|.|||.+|+.++..+.. ..++|+|
T Consensus 90 ~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 45799999999988887643 5678887
No 340
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=37.18 E-value=19 Score=33.61 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45678889999999999988887653
No 341
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=37.08 E-value=1.1e+02 Score=25.22 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCEEEEEecc------HHHHHHHHHHHHhCCc-eEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 486 GCKFLIFAHH------QPMLDAIHQLFLKKKV-HCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 486 g~KvlVF~~~------~~~~~~l~~~L~~~g~-~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
.++|+||+.. -.......+.|...|+ .|..++=....+-|+.+.+ +...+.+.-+.+
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~-~sg~~TvPqIFI 82 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD-YSNWPTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHH-HHTCCSSCEEEE
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHH-hccCCCCCeEeE
Confidence 4799999753 4567888888999988 5888877666665655544 444443333333
No 342
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=36.83 E-value=1.3e+02 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=18.5
Q ss_pred HhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEe
Q 005980 507 LKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLS 544 (666)
Q Consensus 507 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~s 544 (666)
......++.++-.++..+-.++++..+...++.+++++
T Consensus 43 ~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 43 EELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp HTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred hhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 34445556666555544444455544443333444444
No 343
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=36.71 E-value=18 Score=35.22 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=22.1
Q ss_pred ecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 195 ADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+..-|.|||.+|+.++..+.. ..++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 456899999999998887743 5578877
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=36.61 E-value=33 Score=31.21 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=22.6
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCCCCcE
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRDVWPV 219 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~~~~~ 219 (666)
.++|...+|+|||.++-.++..+...+++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46788899999999999888877543333
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.57 E-value=23 Score=31.73 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+.-++|...+|+|||.++-.++..+.. .+++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 334678888999999999888877643 3445444
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.55 E-value=33 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||.++-.++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46777899999999988888763
No 347
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=36.53 E-value=18 Score=35.58 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=23.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
+.++.--|.|||.+|+.++..+.. ..++|+|
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 344467899999999988887743 5678887
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=36.39 E-value=25 Score=34.38 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
-++|+..+|+|||..+-.++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988887765
No 349
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.10 E-value=24 Score=39.95 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHH--cCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 176 PFQRDGVRFALQ--HGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 176 p~Q~~~v~~~~~--~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
....+.+..++. ...++||..++|+|||..|-+++..+
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344444444443 34578999999999999999888876
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.02 E-value=22 Score=32.22 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||.++-.++..+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 56778899999999988888764
No 351
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.88 E-value=1.2e+02 Score=30.28 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=62.5
Q ss_pred cCCccccHHHHHHHHHHHHH---cCCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 465 TDSAEAKIPAVLDYLETVIE---AGCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~---~g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
..++++|--...-.+...+. .+.++||.++....+..+.+.+... ++++..++|+.+..+....+.. +.
T Consensus 52 a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~ 128 (391)
T 1xti_A 52 AKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC 128 (391)
T ss_dssp CSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SC
T ss_pred CCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CC
Confidence 34677887654444433322 3568999999998888777766553 7889999999887665554433 22
Q ss_pred CceEEEEecccc-----ccccCcccCCEEEEecCC
Q 005980 537 DVKAAVLSMKAG-----GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 537 ~~~v~L~st~a~-----~~GlnL~~a~~VI~~d~~ 566 (666)
..+++.+...+ ...+++...+.||+=+.+
T Consensus 129 -~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 129 -PHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp -CSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred -CCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 25566665443 233566777778775543
No 352
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=35.86 E-value=28 Score=30.56 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||..+=.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578889999999998877776653
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.82 E-value=22 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++|...+|+|||.++-.++..+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467888999999999888877653
No 354
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=35.74 E-value=19 Score=35.78 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=21.8
Q ss_pred ecCCCCcHHHHHHHHHHhcC-CCCcEEEE
Q 005980 195 ADEMGLGKTIQAIAVATCFR-DVWPVLIL 222 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~-~~~~~LIv 222 (666)
+.-=|.|||.+++.++..+. ...++|+|
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45678999999998888774 35678887
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.74 E-value=20 Score=33.17 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567888899999999988888763
No 356
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=35.70 E-value=25 Score=33.07 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.3
Q ss_pred eecCCCCcHHHHHHHHHHhcCC-CCcEEEE
Q 005980 194 LADEMGLGKTIQAIAVATCFRD-VWPVLIL 222 (666)
Q Consensus 194 Lad~~GlGKTi~ala~~~~~~~-~~~~LIv 222 (666)
++.--|.|||.+|+.++..+.. ..++|+|
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3567899999999999888754 4678887
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.70 E-value=22 Score=31.23 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.++-.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999999999988887654
No 358
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.54 E-value=20 Score=31.31 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.6
Q ss_pred eeeecCCCCcHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAV 209 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~ 209 (666)
++|...+|+|||.++-.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 567888999999988877
No 359
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.42 E-value=23 Score=31.31 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=17.4
Q ss_pred eeeecCCCCcHHHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVAT 211 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~ 211 (666)
+++...+|+|||.+|-.++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 57888999999999888776
No 360
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=35.28 E-value=19 Score=34.46 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=22.7
Q ss_pred ecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 195 ADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 195 ad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
...-|.|||..|+.++..+. ...++|+|=
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35679999999999888774 356888874
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=35.22 E-value=22 Score=32.11 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=21.8
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+..++|...+|+|||.++-.++..+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355678889999999999988887654
No 362
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=35.11 E-value=68 Score=36.40 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=58.3
Q ss_pred cCCccccHHHHHHHHHHHHHc-----CCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCC
Q 005980 465 TDSAEAKIPAVLDYLETVIEA-----GCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEK 535 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~-----g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~ 535 (666)
..++++|--...-.+...+.. +.++||.+.....+..+...+.+ .++++..++|+.+...+...+. .+
T Consensus 270 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~ 346 (797)
T 4a2q_A 270 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED 346 (797)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH---HT
T ss_pred eCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh---CC
Confidence 346788887766666555544 78999999998877766665554 3899999999987554332222 22
Q ss_pred CCceEEEEecccccc-----cc-CcccCCEEEEecC
Q 005980 536 DDVKAAVLSMKAGGV-----GL-TLTAASTVIFAEL 565 (666)
Q Consensus 536 ~~~~v~L~st~a~~~-----Gl-nL~~a~~VI~~d~ 565 (666)
. .+++.+...+.. .+ .+...+.||+=+.
T Consensus 347 ~--~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 380 (797)
T 4a2q_A 347 S--DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDEC 380 (797)
T ss_dssp C--SEEEECHHHHHHHHHSSSCCCGGGCSEEEETTG
T ss_pred C--CEEEEchHHHHHHHHhccccccccCCEEEEECc
Confidence 2 566666554321 13 4566777777443
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=34.94 E-value=23 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.2
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|..++|+||+.||-.++..+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 56778899999999988887764
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=34.81 E-value=23 Score=31.76 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.+|-.++..+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999999999887777653
No 365
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=34.81 E-value=50 Score=27.58 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhc
Q 005980 499 LDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 499 ~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
...+..+|..+|+.|..++=+.....|.++.++..
T Consensus 19 c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 47889999999999999999999999999999984
No 366
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=34.80 E-value=22 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
..-++|...+|+|||..+-.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999888777765
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.66 E-value=21 Score=31.90 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=19.5
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.++-.++..+.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367888899999999888877653
No 368
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=34.48 E-value=25 Score=34.31 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=27.2
Q ss_pred eecCCCCcHHHHHHHHHHhcCC-CCcEEEEe--C-CcchHHHHH
Q 005980 194 LADEMGLGKTIQAIAVATCFRD-VWPVLILT--P-SSLRLHWAA 233 (666)
Q Consensus 194 Lad~~GlGKTi~ala~~~~~~~-~~~~LIv~--P-~sl~~qW~~ 233 (666)
....-|.|||.+|+.++..+.. ..++|+|= | ..-+..|..
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhC
Confidence 3456799999999998887743 45788873 4 333444543
No 369
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=34.46 E-value=30 Score=35.42 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=28.4
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc-CCCCcEEEEeCCc
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF-RDVWPVLILTPSS 226 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~-~~~~~~LIv~P~s 226 (666)
.++.+++..++|+|||..+-.++..+ ....+++|+=|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35678888999999998876665543 3456788887874
No 370
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=33.99 E-value=29 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
+.-++|...+|+|||.++-.++..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5567889999999999888777765
No 371
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=33.96 E-value=24 Score=35.89 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 181 GVRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 181 ~v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
.|..+++....+|+| ..||+|||.++.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 344555533344554 7899999998864
No 372
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=33.57 E-value=90 Score=24.40 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=39.9
Q ss_pred CEEEEEeccH-HHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEE
Q 005980 487 CKFLIFAHHQ-PMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL 543 (666)
Q Consensus 487 ~KvlVF~~~~-~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~ 543 (666)
.+|.||+... .......++|.++|+.|..++=....+.++.+.+.-.....+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 4678887533 45788889999999999999988888777776665332233344444
No 373
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=33.50 E-value=25 Score=32.02 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=20.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.++-.++..+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999988887664
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=33.37 E-value=26 Score=32.30 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
++|...+|+|||.+|-.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5778889999999998887765
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=33.21 E-value=26 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||.++-.++..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57788899999999988877654
No 376
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=33.14 E-value=30 Score=35.07 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=25.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC--C-CCcEEEEeCC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR--D-VWPVLILTPS 225 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~--~-~~~~LIv~P~ 225 (666)
++...--|.|||.+|.+++..+. . ..++|+|-..
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35567789999999998887765 4 5678888643
No 377
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=33.00 E-value=22 Score=36.69 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|+.++|+|||-.+..++..+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 56888999999999999988764
No 378
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=32.85 E-value=27 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..|.-+.|...+|+|||..+-.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344566789999999998887777664
No 379
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=32.82 E-value=29 Score=37.87 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
+++....|.|||.+|++++..+. ...++|+|--
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 46677789999999999888764 3567888753
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=32.63 E-value=27 Score=31.71 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.++|...+|+|||.++-.++..+.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 467888999999999887777653
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=32.63 E-value=26 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.4
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..-++|..++|+|||.||-.++..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 33456788999999999988887664
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=32.36 E-value=26 Score=32.27 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.6
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
++|...+|+|||.+|-.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788889999999988887765
No 383
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=32.12 E-value=61 Score=34.56 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred cCCccccHHHHHHHHHHHHHc-----CCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCC
Q 005980 465 TDSAEAKIPAVLDYLETVIEA-----GCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEK 535 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~~-----g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~ 535 (666)
..++++|--...-.+...+.. +.++||.+.....+..+.+.+.. .++++..++|+.+...+...+. .+
T Consensus 29 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~ 105 (556)
T 4a2p_A 29 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED 105 (556)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---HH
T ss_pred cCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---CC
Confidence 346788876655555554444 77899999998877666665554 3899999999986554332222 12
Q ss_pred CCceEEEEecccccc-----cc-CcccCCEEEEecCC
Q 005980 536 DDVKAAVLSMKAGGV-----GL-TLTAASTVIFAELS 566 (666)
Q Consensus 536 ~~~~v~L~st~a~~~-----Gl-nL~~a~~VI~~d~~ 566 (666)
. .+++.+...+.. .+ .+...+.||+=+.+
T Consensus 106 ~--~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah 140 (556)
T 4a2p_A 106 S--DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 140 (556)
T ss_dssp C--SEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG
T ss_pred C--CEEEECHHHHHHHHHhCcccccccCCEEEEECCc
Confidence 2 566666655431 13 56677888875543
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=32.00 E-value=20 Score=31.88 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=16.6
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.-++|...+|+|||.+|-.++..+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467889999999999988877654
No 385
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=31.92 E-value=2.1e+02 Score=23.34 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=16.2
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCceE
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKVHC 513 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~~~ 513 (666)
+.+++|..........+...|...|+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v 32 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTV 32 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 3456666666666666666666665543
No 386
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=31.83 E-value=1.7e+02 Score=32.72 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=29.4
Q ss_pred EEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHH
Q 005980 488 KFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQAL 528 (666)
Q Consensus 488 KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~ 528 (666)
-+-|.+........+++.|...|++|... |+.+--+|..+
T Consensus 353 diAIL~R~~~~~~~le~~L~~~gIPy~~~-g~~~f~~~~ei 392 (724)
T 1pjr_A 353 DFAVLYRTNAQSRVMEEMLLKANIPYQIV-GGLKFYDRKEI 392 (724)
T ss_dssp GEEEEESSGGGHHHHHHHHHHTTCCEEEE-TSCCGGGSHHH
T ss_pred heeeeeecchhHHHHHHHHHHcCCCEEEe-CCcchhhCHHH
Confidence 46666666777899999999999998655 55665555543
No 387
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=31.76 E-value=2e+02 Score=23.03 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=40.0
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCC-CCceEEEEeccccc-----ccc-CcccCCEEEEecCCCCcchhhhhhhhhhccC
Q 005980 511 VHCIRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGG-----VGL-TLTAASTVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 511 ~~~~~i~G~~~~~~R~~~i~~F~~~-~~~~v~L~st~a~~-----~Gl-nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
..++.++-.++...-.++++.++.. +.+.+++++..... ..+ ....+...-++.-|.++..+.+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 5677777776655555566655432 33455555543321 111 1122333344556778888888888776654
Q ss_pred C
Q 005980 584 Q 584 (666)
Q Consensus 584 q 584 (666)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 4
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=31.41 E-value=26 Score=32.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhc
Q 005980 192 ILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~ 213 (666)
++|...+|+|||.++-.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5777889999999998888766
No 389
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=31.27 E-value=33 Score=34.60 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=17.3
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAI 207 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~al 207 (666)
|..+++....+|+| ..||+|||.++.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM~ 113 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSMG 113 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHHT
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEEc
Confidence 44455533445555 889999999873
No 390
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=30.77 E-value=37 Score=34.30 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.9
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC---CCCcEEEEeC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR---DVWPVLILTP 224 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~---~~~~~LIv~P 224 (666)
+++..--|.|||.+|.+++..+. ...++|+|--
T Consensus 21 ~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 21 IFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 45556789999999998887664 4567888854
No 391
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=30.72 E-value=64 Score=41.89 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=36.0
Q ss_pred HHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHHHHh
Q 005980 182 VRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS--LRLHWAAMIQQWL 239 (666)
Q Consensus 182 v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s--l~~qW~~e~~~~~ 239 (666)
+..++..+.++||.+++|+|||..|-.++.... ..+++.+.-++ -..+...-+...+
T Consensus 1260 l~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~-~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRNSS-LYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp HHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCS-SCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred HHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCC-CCceEEEEeecCCCHHHHHHHHHHHh
Confidence 344566788999999999999998866666542 33444443332 2334455555543
No 392
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.61 E-value=28 Score=36.03 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=17.7
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAI 207 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~al 207 (666)
|..+++....+|+| ..||+|||.++.
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeC
Confidence 44555533345555 789999999986
No 393
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=30.40 E-value=25 Score=35.66 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++-+++..++|+|||...-+++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3455678899999999988776666554
No 394
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.31 E-value=2.1e+02 Score=23.20 Aligned_cols=78 Identities=5% Similarity=-0.082 Sum_probs=38.8
Q ss_pred HhCCceEEEEECCCCHHHHHHHHHHhcC---CCCceEEEEeccccccc-cCcccCCEEEEecCCCCcchhhhhhhhhhcc
Q 005980 507 LKKKVHCIRIDGGTPPASRQALVTEFQE---KDDVKAAVLSMKAGGVG-LTLTAASTVIFAELSWTPGDLIQAEDRAHRI 582 (666)
Q Consensus 507 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~---~~~~~v~L~st~a~~~G-lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 582 (666)
......++.++-..+...-.++++..+. ...+.+++++...-..- ...-.+...-++.-|.++..+.+++.++.+.
T Consensus 51 ~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 51 HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3445667777766654444555555554 23445555554322111 1111112222233466777777777777664
Q ss_pred CC
Q 005980 583 GQ 584 (666)
Q Consensus 583 Gq 584 (666)
++
T Consensus 131 ~~ 132 (143)
T 3cnb_A 131 KK 132 (143)
T ss_dssp TC
T ss_pred hc
Confidence 43
No 395
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=30.23 E-value=23 Score=37.10 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=25.8
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFRD-VWPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~P 224 (666)
.++++...|+|||..+..++..+.. ..++++|.-
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4667788999999999888877643 456777753
No 396
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=29.85 E-value=23 Score=36.69 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=17.7
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..++.....+|+| ..||+|||.++.+
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 34445433344544 7899999999875
No 397
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=29.77 E-value=1.7e+02 Score=26.06 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=60.5
Q ss_pred cCCccccHHHHHHHHHHHH------HcCCEEEEEeccHHHHHHHHHHHHhC--CceEEEEECCCCHHHHHHHHHHhcCCC
Q 005980 465 TDSAEAKIPAVLDYLETVI------EAGCKFLIFAHHQPMLDAIHQLFLKK--KVHCIRIDGGTPPASRQALVTEFQEKD 536 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~------~~g~KvlVF~~~~~~~~~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~ 536 (666)
..++++|--...-.+...+ ..+.++||.+.....+..+.+.+... ++++..++|+.+.......+. .+.
T Consensus 45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 121 (207)
T 2gxq_A 45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RGA 121 (207)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HCC
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CCC
Confidence 3467788866443333322 24678999999998888888887765 467888899887554433332 232
Q ss_pred CceEEEEecccc-----ccccCcccCCEEEEecCC
Q 005980 537 DVKAAVLSMKAG-----GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 537 ~~~v~L~st~a~-----~~GlnL~~a~~VI~~d~~ 566 (666)
.+++.+...+ ...+++...+.||+=|.+
T Consensus 122 --~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 122 --DAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp --SEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred --CEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 5555554332 123556777788775543
No 398
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=29.73 E-value=24 Score=32.47 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=20.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
|.-++|..++|+|||-.+-.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44467889999999998887776653
No 399
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=29.69 E-value=21 Score=35.46 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.3
Q ss_pred CCCeeeecCCCCcHHHHHHHHHH
Q 005980 189 GGRILLADEMGLGKTIQAIAVAT 211 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~ 211 (666)
|.++++..+.|+|||-.|++++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 66789999999999999998766
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.62 E-value=40 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=23.3
Q ss_pred eeeecCCCCcHHHHHHHHHHhcCC-CCcEEEEe
Q 005980 192 ILLADEMGLGKTIQAIAVATCFRD-VWPVLILT 223 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~~-~~~~LIv~ 223 (666)
+.++...|+|||..+..++..+.. ..++-++.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 456778999999988888877643 34555554
No 401
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.45 E-value=28 Score=31.76 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|...+|+|||.++-.++..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44567888899999999988887654
No 402
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=29.43 E-value=58 Score=28.34 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhC
Q 005980 470 AKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKK 509 (666)
Q Consensus 470 ~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~ 509 (666)
.+...+++++.+.+..|.+++|.|.....++.|.+.|-..
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 4677888999999999999999999999999999999664
No 403
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=29.25 E-value=53 Score=30.36 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEE
Q 005980 179 RDGVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLI 221 (666)
Q Consensus 179 ~~~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LI 221 (666)
...|.+-+..|.-+.|..+.|+|||..+=.++..+ . +.+.+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~ 53 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF 53 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE
Confidence 34566777777777888999999998766665554 2 44544
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=29.04 E-value=32 Score=32.01 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
++|...+|+|||.++-.++..+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57788899999999988877663
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=29.02 E-value=75 Score=29.65 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcCCCCcEE
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFRDVWPVL 220 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~~~~~~L 220 (666)
|.-+++....|+|||.++-.++..+....+++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 44567788999999999988888776523443
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=28.59 E-value=32 Score=32.79 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
..++|...+|+|||..+-.++..+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3468899999999999888877654
No 407
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=28.58 E-value=50 Score=35.00 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=35.3
Q ss_pred HHHHHHHH--HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeC----CcchHHHHHHHHHH
Q 005980 179 RDGVRFAL--QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTP----SSLRLHWAAMIQQW 238 (666)
Q Consensus 179 ~~~v~~~~--~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P----~sl~~qW~~e~~~~ 238 (666)
..++..+. -+|++..|..+.|+|||..++..+.......-+.|++- .+-+..+.+++...
T Consensus 150 iraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~ 215 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQH 215 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhC
Confidence 45666654 34666656566999999998866665554443333332 13345555666553
No 408
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.55 E-value=26 Score=34.65 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC
Q 005980 181 GVRFALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS 225 (666)
Q Consensus 181 ~v~~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~ 225 (666)
.+.+-+..|..+.|..+.|+|||..+-.++..+ .+.+++.+|.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q 160 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANH 160 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGT
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecC
Confidence 334444556667788899999998777666665 5777655553
No 409
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=28.53 E-value=55 Score=29.47 Aligned_cols=44 Identities=30% Similarity=0.195 Sum_probs=29.0
Q ss_pred eeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHHHHh
Q 005980 193 LLADEMGLGKTIQAIAVATCFRDVWPVLILTPSS-LRLHWAAMIQQWL 239 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~s-l~~qW~~e~~~~~ 239 (666)
++....|+|||.-|..++.. ..|++.+++.. .-..|...+.++-
T Consensus 3 lV~Gg~~SGKS~~A~~la~~---~~~~~yiaT~~~~d~e~~~rI~~h~ 47 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD---APQVLYIATSQILDDEMAARIQHHK 47 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS---CSSEEEEECCCC------CHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHHH
Confidence 55667999999988887754 46888888864 3455777777765
No 410
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=28.29 E-value=34 Score=34.73 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 181 GVRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 181 ~v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
.|..+++....+|+| ..||+|||.++.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEecc
Confidence 344555534445555 7899999998764
No 411
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=28.28 E-value=45 Score=26.34 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=31.3
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~ 521 (666)
.+.++++||..-.........|...|+++..+.|+..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 5789999998877778888899999999889988753
No 412
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=27.58 E-value=35 Score=35.47 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeccHHHHHHH------HHHHHhCCceEEEEECCC--CHHHHHHHHHHhc
Q 005980 471 KIPAVLDYLETVIEAGCKFLIFAHHQPMLDAI------HQLFLKKKVHCIRIDGGT--PPASRQALVTEFQ 533 (666)
Q Consensus 471 Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l------~~~L~~~g~~~~~i~G~~--~~~~R~~~i~~F~ 533 (666)
+++.+.+.+......|-.+++.+|....+... ...+...+ ...+-+.. ..+..+.+-+.+-
T Consensus 293 ~~~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~n~~--~~i~~~~~~~d~~ta~~~s~~lG 361 (437)
T 1e9r_A 293 KLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFR--SLVVLGGSRTDPKTNEDMSLSLG 361 (437)
T ss_dssp BCSSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCC--EEEEEECCTTCHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHhccCCEEEEEecCHHHHHHHHCHHHHHHHHhccC--cEEEEeCCCCCHHHHHHHHHHcC
Confidence 34456666666666788899999988877643 22333333 33333444 5556666666663
No 413
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=27.51 E-value=27 Score=35.82 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=17.2
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 44445433344544 7899999999876
No 414
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=27.49 E-value=47 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=31.2
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCce-EEEEECCCC
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVH-CIRIDGGTP 521 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~-~~~i~G~~~ 521 (666)
..+.++||||..-.........|...|+. +..+.|+..
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 46778999999877788888899999995 778888754
No 415
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=27.32 E-value=41 Score=34.27 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=17.6
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..+++....+|+ -..||+|||.++.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCceEEEEeecCCCCCcceeccc
Confidence 3444553334444 47899999998865
No 416
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=27.31 E-value=51 Score=34.98 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=23.5
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT 223 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~ 223 (666)
+|++..|-.+.|+|||..++..+.......-+.|++
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~ 197 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV 197 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEE
Confidence 466655555699999999887776655444333443
No 417
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=27.30 E-value=38 Score=33.79 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=17.3
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..+++....+|+ -..||+|||.++.+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 3344443333444 47899999999865
No 418
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=27.30 E-value=38 Score=34.21 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..+++....+|+ -..||+|||.++.+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G 109 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGG 109 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeec
Confidence 3344443334444 47899999998764
No 419
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.18 E-value=74 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.1
Q ss_pred HcCCCeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeCCcchH
Q 005980 187 QHGGRILLADEMGLGKTIQAIAVATCFR-DVWPVLILTPSSLRL 229 (666)
Q Consensus 187 ~~~~~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P~sl~~ 229 (666)
.....+++..++|+|||..|-++..... ..+|++.|--..+-.
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 201 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH
Confidence 3466789999999999998766655543 356777665555433
No 420
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=27.16 E-value=38 Score=34.42 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=17.2
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..++.....+|+ -..||+|||.++.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCCceEEEeecCCCCCCceEEec
Confidence 3444443333444 47899999998764
No 421
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=26.97 E-value=36 Score=34.51 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm~G 125 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTMLG 125 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHHTB
T ss_pred HHHHhCCCceEEEEeCCCCCCceeeecc
Confidence 34444433344554 8899999998864
No 422
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=26.89 E-value=2.8e+02 Score=25.71 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=58.0
Q ss_pred CCccccHHHHHH-HHHHHHH-----------cCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHH
Q 005980 466 DSAEAKIPAVLD-YLETVIE-----------AGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALV 529 (666)
Q Consensus 466 ~~~~~Kl~~l~~-~l~~~~~-----------~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i 529 (666)
.++++|--+..- .+..+.. .+.++||.+.....+..+.+.+.. .++.+..+.|+.+..+...
T Consensus 68 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 145 (253)
T 1wrb_A 68 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR-- 145 (253)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH--
T ss_pred CCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH--
Confidence 467778764333 3333322 235899999998877776665544 4678888999887544332
Q ss_pred HHhcCCCCceEEEEeccccc-----cccCcccCCEEEEecCC
Q 005980 530 TEFQEKDDVKAAVLSMKAGG-----VGLTLTAASTVIFAELS 566 (666)
Q Consensus 530 ~~F~~~~~~~v~L~st~a~~-----~GlnL~~a~~VI~~d~~ 566 (666)
....+. .+++.+...+- ..+++...+.||+=+.+
T Consensus 146 -~~~~~~--~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 184 (253)
T 1wrb_A 146 -EVQMGC--HLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184 (253)
T ss_dssp -HHSSCC--SEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH
T ss_pred -HhCCCC--CEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH
Confidence 333333 56666655442 23567777888875543
No 423
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=26.82 E-value=45 Score=33.08 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
|.++++..+.|.|||-.|++++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 667899999999999999998874
No 424
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=26.46 E-value=33 Score=35.01 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHhcCC--CCcEEEE
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATCFRD--VWPVLIL 222 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~~~~--~~~~LIv 222 (666)
+..|+-+++..++|+|||...-+++..+.. .+.++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 344556788999999999887777766543 3555544
No 425
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.34 E-value=1.9e+02 Score=22.89 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=10.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhCCc
Q 005980 488 KFLIFAHHQPMLDAIHQLFLKKKV 511 (666)
Q Consensus 488 KvlVF~~~~~~~~~l~~~L~~~g~ 511 (666)
+++|.-........+...|...|+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~ 27 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGY 27 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc
Confidence 344444444444444444444443
No 426
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=26.33 E-value=35 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.-++|...+|+|||.++=.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44577888999999999988887654
No 427
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=26.27 E-value=38 Score=34.49 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=17.5
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 34445433344444 7899999999865
No 428
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=26.24 E-value=40 Score=34.26 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeC
Confidence 34445433344554 7899999998864
No 429
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.17 E-value=39 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=18.2
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.++|...+|+|||..+=.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 46788899999999887776654
No 430
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.13 E-value=34 Score=35.38 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 181 GVRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 181 ~v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
.|..+++....+|+| ..||+|||.++.+
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTE
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEecC
Confidence 345555543445555 8899999999864
No 431
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=26.05 E-value=52 Score=34.91 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHH--HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCC----cchHHHHHHHHH
Q 005980 179 RDGVRFAL--QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPS----SLRLHWAAMIQQ 237 (666)
Q Consensus 179 ~~~v~~~~--~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~----sl~~qW~~e~~~ 237 (666)
..++..+. -+|++..|..+.|+|||..++..+.......-+.|++-- +-+.++.+++..
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 56777664 346666666669999999988666655543323333321 234455555554
No 432
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=25.92 E-value=42 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 181 GVRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 181 ~v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
.|..+++....+|+ -..||+|||.++.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTB
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEec
Confidence 34455553333444 58899999998864
No 433
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=25.86 E-value=40 Score=34.11 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHTB
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEec
Confidence 33444433344554 8899999999864
No 434
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=25.85 E-value=40 Score=34.07 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..+++....+|+ -..||+|||.++.+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHcCCccceeeecCCCCCCCeEEec
Confidence 4444543334444 47899999998864
No 435
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=25.77 E-value=34 Score=30.33 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=19.0
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhc
Q 005980 190 GRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.-++|...+|+|||.++=.++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678889999999888777765
No 436
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=25.67 E-value=50 Score=29.67 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.6
Q ss_pred CeeeecCCCCcHHHHHHHHHHh
Q 005980 191 RILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~ 212 (666)
.+.|...+|+|||..+-.++..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3567888999999988777664
No 437
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=25.62 E-value=37 Score=30.30 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=18.1
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHh
Q 005980 189 GGRILLADEMGLGKTIQAIAVATC 212 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~ 212 (666)
|.-++|...+|+|||..+=.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 444677888999999887766554
No 438
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=25.52 E-value=2.7e+02 Score=30.59 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=28.2
Q ss_pred CEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHH
Q 005980 487 CKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQ 526 (666)
Q Consensus 487 ~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~ 526 (666)
..+.|.+........+...|...|+++. +.|+.+-.++.
T Consensus 343 ~diaVL~r~~~~~~~l~~~L~~~gIp~~-~~~~~~~~~~~ 381 (673)
T 1uaa_A 343 KDYAILYRGNHQSRVFEKFLMQNRIPYK-ISGGTSFFSRP 381 (673)
T ss_dssp TTEEEEESSSGGGTTHHHHHHHTTCCEE-ESCCCCGGGCH
T ss_pred cCEEEEEechhhHHHHHHHHHHCCCCEE-EeCCcccccCH
Confidence 3466666667778899999999999985 45665655544
No 439
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=25.51 E-value=2.1e+02 Score=22.47 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=10.3
Q ss_pred EEEEEeccHHHHHHHHHHHHhCCc
Q 005980 488 KFLIFAHHQPMLDAIHQLFLKKKV 511 (666)
Q Consensus 488 KvlVF~~~~~~~~~l~~~L~~~g~ 511 (666)
+++|..........+...|...|+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~ 27 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGY 27 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC
Confidence 344444444444444444444443
No 440
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=25.51 E-value=45 Score=26.47 Aligned_cols=37 Identities=8% Similarity=0.192 Sum_probs=31.1
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~ 521 (666)
.+.++|+||..-.........|...|+++..+.|+..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 5778999998776777888899999999889988753
No 441
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=25.47 E-value=40 Score=31.87 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=21.3
Q ss_pred cCCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 188 HGGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 188 ~~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+..++|...+|+|||.++-.++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34467889999999999998887765
No 442
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=25.45 E-value=42 Score=35.12 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence 33444433344554 7899999999864
No 443
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=25.41 E-value=45 Score=34.22 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.2
Q ss_pred eeecCCCCcHHHHHHHHHHhcC-------CCCcEEEE
Q 005980 193 LLADEMGLGKTIQAIAVATCFR-------DVWPVLIL 222 (666)
Q Consensus 193 iLad~~GlGKTi~ala~~~~~~-------~~~~~LIv 222 (666)
+...--|.|||.+|+.++..+. ...++|+|
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 4446678999999998888764 46788887
No 444
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.34 E-value=39 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=19.2
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
|.-+.|..++|+|||.++-.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4446788889999998887776654
No 445
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=25.32 E-value=27 Score=35.26 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 184 FALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 184 ~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
.+++....+|+ -..||+|||.++.+
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G 104 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLN 104 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHS
T ss_pred HhcCCceeEEEEECCCCCCCcEeccC
Confidence 33442334444 47899999999863
No 446
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=25.29 E-value=38 Score=32.59 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHcCCCeeeecCCCCcHHHHHHHHHHhcCC--CCcEEEE
Q 005980 186 LQHGGRILLADEMGLGKTIQAIAVATCFRD--VWPVLIL 222 (666)
Q Consensus 186 ~~~~~~~iLad~~GlGKTi~ala~~~~~~~--~~~~LIv 222 (666)
+..|+-+.+..++|+|||...-+++..+.. .+.+++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 444556788899999999877666665532 3555443
No 447
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=25.28 E-value=34 Score=35.07 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=16.2
Q ss_pred HHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 184 FALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 184 ~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
.+++....+|+ -..||+|||.++.+
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTMLG 118 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHHTB
T ss_pred HhhcCceeeEeeecCCCCCCCeEeec
Confidence 33442333444 48899999998864
No 448
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=25.20 E-value=44 Score=33.68 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
|..+++....+|+| ..||+|||.++.+
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm~G 103 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTMGE 103 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHCC
T ss_pred HHHHHhhcCeeEEEecccCCCceEeecc
Confidence 33444433344554 7899999998743
No 449
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=25.14 E-value=36 Score=34.54 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=17.3
Q ss_pred HHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 182 VRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 182 v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
|..++.....+|+ -..||+|||.++.+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEec
Confidence 3444443333444 47899999998875
No 450
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=25.09 E-value=41 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=19.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
|.-++|...+|+|||..+=.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4456788999999999887776655
No 451
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.93 E-value=1.6e+02 Score=24.00 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=8.0
Q ss_pred CCCcchhhhhhhhhhc
Q 005980 566 SWTPGDLIQAEDRAHR 581 (666)
Q Consensus 566 ~wnp~~~~Qa~gR~~R 581 (666)
|.++..+.+++.++.+
T Consensus 105 P~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 105 PFRLDYLLERVKKIIS 120 (142)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4445555555555544
No 452
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.79 E-value=1.2e+02 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCc
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKV 511 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~ 511 (666)
+.+++|..........+...|...|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~ 27 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTV 27 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence 46788888888888888888888776
No 453
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=24.68 E-value=41 Score=34.04 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=16.6
Q ss_pred HHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 183 RFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 183 ~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
..++.....+|+ -..||+|||.++.+
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHhCCCcceEEEECCCCCCcceEeec
Confidence 344443333444 47899999998864
No 454
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=24.65 E-value=99 Score=30.31 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=24.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEeC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR-DVWPVLILTP 224 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~P 224 (666)
-+.|..+.|+|||..+-.++..+. ..+.+++..-
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 345778899999988777766654 3567777653
No 455
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.29 E-value=2.8e+02 Score=22.37 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=8.8
Q ss_pred CceEEEEECCCCHHHHHHHHHHhc
Q 005980 510 KVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 510 g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
...++.++-.++..+-.++++..+
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~ 69 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLK 69 (140)
T ss_dssp CCSEEEEETTC------CHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 345555555554433334444443
No 456
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.24 E-value=38 Score=31.29 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.7
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+.|...+|+|||..+=.++..+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 466788899999998877776543
No 457
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=24.17 E-value=47 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=31.8
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCC
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTP 521 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~ 521 (666)
..+.++|+||..-.........|...|+++..+.|+..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 35678999998776777888899999999999999864
No 458
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.17 E-value=1.7e+02 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=16.9
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCce
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKVH 512 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~~ 512 (666)
+.+++|..........+...|...|+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~ 31 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIH 31 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 345666666666666666666666655
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=24.01 E-value=44 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=20.5
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.-+++...+|+|||.++-.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44467788899999999888877664
No 460
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=23.93 E-value=1.1e+02 Score=27.91 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=54.0
Q ss_pred cCCccccHHH-HHHHHHHHH--HcCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 465 TDSAEAKIPA-VLDYLETVI--EAGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 465 ~~~~~~Kl~~-l~~~l~~~~--~~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
..++++|--. ++-.+..+. ..+.++||.+.....+..+.+.+.. .++.+..++|+.+..+... .+..
T Consensus 58 ~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~--- 131 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLRD--- 131 (224)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTT---
T ss_pred CCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCCC---
Confidence 3467788766 344444332 2356899999998887777766654 4778888999876444322 2222
Q ss_pred ceEEEEecccc-----ccccCcccCCEEEEecCC
Q 005980 538 VKAAVLSMKAG-----GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 538 ~~v~L~st~a~-----~~GlnL~~a~~VI~~d~~ 566 (666)
+.+++.+...+ ...+++...+.||+=+.+
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 35666665443 234556677777775543
No 461
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=23.66 E-value=1.1e+02 Score=33.76 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=46.7
Q ss_pred CccccHHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHHhCCceEEEEE
Q 005980 467 SAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRID 517 (666)
Q Consensus 467 ~~~~Kl~~l~~~l~~~~~~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~ 517 (666)
.+.+|-..+.+++..+...|.++||-++....+|.|.+.|...+.+++++.
T Consensus 214 PGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 577899999999999999999999999999999999999999888888874
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=23.63 E-value=47 Score=31.46 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.4
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
.+.|...+|+|||..|-.++..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 366888999999999888877654
No 463
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=23.37 E-value=51 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=18.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
|.-++|..++|+|||-.+-.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3346788899999998877776654
No 464
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=23.36 E-value=37 Score=34.39 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=22.4
Q ss_pred eecCCCCcHHHHHHHHHHhcC-CCCcEEEE
Q 005980 194 LADEMGLGKTIQAIAVATCFR-DVWPVLIL 222 (666)
Q Consensus 194 Lad~~GlGKTi~ala~~~~~~-~~~~~LIv 222 (666)
...--|.|||.+|+.++..+. ...++|+|
T Consensus 7 ~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 7 FNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 345578999999998887764 45688888
No 465
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.33 E-value=1.7e+02 Score=24.53 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=21.8
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCI 514 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~ 514 (666)
.+.+++|..........+...|...|+.+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~ 35 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTE 35 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 456778887777788888888877776553
No 466
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=23.21 E-value=1.1e+02 Score=25.07 Aligned_cols=95 Identities=7% Similarity=0.086 Sum_probs=49.4
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHh-CCceEEEEECCCC-HHHHHHHHHHhcC---CCCceEEEEeccccccc-cCcccCC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLK-KKVHCIRIDGGTP-PASRQALVTEFQE---KDDVKAAVLSMKAGGVG-LTLTAAS 558 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~-~g~~~~~i~G~~~-~~~R~~~i~~F~~---~~~~~v~L~st~a~~~G-lnL~~a~ 558 (666)
.|..++.+....+.++ .+.. ..+.++.++-.++ ...-.++++..+. ..++.+++++...-..- ...-.+.
T Consensus 28 ~~~~v~~~~~~~~a~~----~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g 103 (140)
T 3lua_A 28 GEYDFIEVENLKKFYS----IFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFK 103 (140)
T ss_dssp CCCEEEEECSHHHHHT----TTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSC
T ss_pred cCccEEEECCHHHHHH----HHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcC
Confidence 3666665554433332 3344 5567777777777 6665666665554 23445666654322111 1111122
Q ss_pred EEEEecCCCCcchhhhhhhhhhccC
Q 005980 559 TVIFAELSWTPGDLIQAEDRAHRIG 583 (666)
Q Consensus 559 ~VI~~d~~wnp~~~~Qa~gR~~R~G 583 (666)
..-++.-|.++..+.+++.++.+-+
T Consensus 104 ~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 104 VSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhc
Confidence 2223345677778888887776644
No 467
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=23.21 E-value=3.8e+02 Score=24.73 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=58.4
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEeccccc----cccCcccCCEE
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGG----VGLTLTAASTV 560 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~~----~GlnL~~a~~V 560 (666)
.|..+..+....+.+ ..+......++.++-.++..+-.++++..+..+.+.+++++...-. .++.. +|+.
T Consensus 60 ~g~~v~~~~~~~~al----~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~-Ga~~- 133 (249)
T 3q9s_A 60 AGYVVDHADSAMNGL----IKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGL-GADD- 133 (249)
T ss_dssp TTCEEEEESSHHHHH----HHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHH-TCSE-
T ss_pred CCCEEEEeCCHHHHH----HHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHC-CCcE-
Confidence 355544444433333 3344556788999999988777788888877666677777754321 11221 2333
Q ss_pred EEecCCCCcchhhhhhhhhhccCC
Q 005980 561 IFAELSWTPGDLIQAEDRAHRIGQ 584 (666)
Q Consensus 561 I~~d~~wnp~~~~Qa~gR~~R~Gq 584 (666)
++.-|.++..+.+++.++.|-+.
T Consensus 134 -yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 134 -YLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp -EEESSCCHHHHHHHHHHHHCCCC
T ss_pred -EEECCCCHHHHHHHHHHHHhhcc
Confidence 33467789999999998887554
No 468
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=23.16 E-value=19 Score=39.43 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.1
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+||.+++|+|||..|-+++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 69999999999999877665544
No 469
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.16 E-value=2.7e+02 Score=21.73 Aligned_cols=17 Identities=6% Similarity=0.009 Sum_probs=9.8
Q ss_pred CCCCcchhhhhhhhhhc
Q 005980 565 LSWTPGDLIQAEDRAHR 581 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~~R 581 (666)
-|.++..+.+++.++.+
T Consensus 108 kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 108 KPVDADQLVERAGALIG 124 (127)
T ss_dssp SSCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45566666666665554
No 470
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=23.15 E-value=35 Score=34.73 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCeee-ecCCCCcHHHHHHH
Q 005980 181 GVRFALQHGGRILL-ADEMGLGKTIQAIA 208 (666)
Q Consensus 181 ~v~~~~~~~~~~iL-ad~~GlGKTi~ala 208 (666)
.|..++.....+|+ -..||+|||.++.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 99 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIYG 99 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeecC
Confidence 34445553334444 47899999998764
No 471
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=23.15 E-value=84 Score=28.32 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=50.9
Q ss_pred CCccccHHHHHHHHHHHHH------cCCEEEEEeccHHHHHH-HHHHHHh---CCceEEEEECCCCHHHHHHHHHHhcCC
Q 005980 466 DSAEAKIPAVLDYLETVIE------AGCKFLIFAHHQPMLDA-IHQLFLK---KKVHCIRIDGGTPPASRQALVTEFQEK 535 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~~------~g~KvlVF~~~~~~~~~-l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~ 535 (666)
.++++|--...-.+...+. .+.++||.+.....++. +.+.+.. .++.+..++|+.+...+...+. .+
T Consensus 56 ~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~ 132 (216)
T 3b6e_A 56 PTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---KS 132 (216)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH---HH
T ss_pred CCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc---cC
Confidence 3455666555544443322 26799999998877665 4444433 3678888888765443322221 12
Q ss_pred CCceEEEEeccccc-----------cccCcccCCEEEEec
Q 005980 536 DDVKAAVLSMKAGG-----------VGLTLTAASTVIFAE 564 (666)
Q Consensus 536 ~~~~v~L~st~a~~-----------~GlnL~~a~~VI~~d 564 (666)
+.+++.+...+. .++.+...+.||+=|
T Consensus 133 --~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDE 170 (216)
T 3b6e_A 133 --CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDE 170 (216)
T ss_dssp --CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETT
T ss_pred --CCEEEECHHHHHHHHhccCcccccccchhcccEEEEEC
Confidence 256666655442 125566666666643
No 472
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.12 E-value=1.4e+02 Score=31.54 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=62.9
Q ss_pred hcCCccccHHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHHHHhC----CceEEEEECCCCHHHHHHHHHHhcCCCCc
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKK----KVHCIRIDGGTPPASRQALVTEFQEKDDV 538 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~-KvlVF~~~~~~~~~l~~~L~~~----g~~~~~i~G~~~~~~R~~~i~~F~~~~~~ 538 (666)
...++++|-...+..+...+..+. ++||.+.....+....+.+... +..+..++|+.+..++ . ..+.
T Consensus 134 ~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~--~~~~ 205 (510)
T 2oca_A 134 NLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK------Y--KNDA 205 (510)
T ss_dssp ECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG------G--CTTC
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc------c--ccCC
Confidence 345678898877777766655555 9999999998888888888764 3467888888775543 1 1223
Q ss_pred eEEEEeccccccc--cCcccCCEEEEecCC
Q 005980 539 KAAVLSMKAGGVG--LTLTAASTVIFAELS 566 (666)
Q Consensus 539 ~v~L~st~a~~~G--lnL~~a~~VI~~d~~ 566 (666)
.+++.+...+... ..+...+.||+=+.+
T Consensus 206 ~I~i~T~~~l~~~~~~~~~~~~liIiDE~H 235 (510)
T 2oca_A 206 PVVVGTWQTVVKQPKEWFSQFGMMMNDECH 235 (510)
T ss_dssp SEEEEEHHHHTTSCGGGGGGEEEEEEETGG
T ss_pred cEEEEeHHHHhhchhhhhhcCCEEEEECCc
Confidence 6667766655433 334556666665544
No 473
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=23.11 E-value=2.9e+02 Score=24.41 Aligned_cols=96 Identities=10% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCccccHHHHHHHHHHHH---HcCCEEEEEeccHHHHHHHHHHHHhC-----CceEEEEECCCCHHHHHHHHHHhcCCCC
Q 005980 466 DSAEAKIPAVLDYLETVI---EAGCKFLIFAHHQPMLDAIHQLFLKK-----KVHCIRIDGGTPPASRQALVTEFQEKDD 537 (666)
Q Consensus 466 ~~~~~Kl~~l~~~l~~~~---~~g~KvlVF~~~~~~~~~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 537 (666)
.++++|--+..-.+.... ..+.++||.+.....+..+.+.+... +..+..++|+.+..+. ......+
T Consensus 48 pTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-- 122 (206)
T 1vec_A 48 KNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD---IMRLDDT-- 122 (206)
T ss_dssp CSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH---HHHTTSC--
T ss_pred CCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH---HHhcCCC--
Confidence 467788765443333221 13568999999988877777766542 6788899998875443 2333333
Q ss_pred ceEEEEecccc-----ccccCcccCCEEEEecCC
Q 005980 538 VKAAVLSMKAG-----GVGLTLTAASTVIFAELS 566 (666)
Q Consensus 538 ~~v~L~st~a~-----~~GlnL~~a~~VI~~d~~ 566 (666)
+.+++.+.... ...+++...+.+|+=|.+
T Consensus 123 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred CCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 35566665433 112356677777775443
No 474
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=22.88 E-value=55 Score=26.24 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=29.6
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGT 520 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~ 520 (666)
.+++++|+|..-.........|...|++.+.+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 577899999876666777889999999988888875
No 475
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.86 E-value=1.5e+02 Score=24.25 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=18.6
Q ss_pred CCEEEEEeccHHHHHHHHHHHHhCCc
Q 005980 486 GCKFLIFAHHQPMLDAIHQLFLKKKV 511 (666)
Q Consensus 486 g~KvlVF~~~~~~~~~l~~~L~~~g~ 511 (666)
+.+++|..........+...|...|+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~ 31 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGV 31 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTB
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCC
Confidence 45677777777777777777777766
No 476
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.84 E-value=2.1e+02 Score=23.82 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=37.5
Q ss_pred cCCEEEEEeccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhcCCCCceEEEEecccc-ccccC
Q 005980 485 AGCKFLIFAHHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAG-GVGLT 553 (666)
Q Consensus 485 ~g~KvlVF~~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~v~L~st~a~-~~Gln 553 (666)
.+.+++|..........+...|...|+.+.... +. .+.++...... +.++|+..... ..|+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~~-~dlvi~d~~l~~~~g~~ 68 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFT---SP---LDALEALKGTS-VQLVISDMRMPEMGGEV 68 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEES---CH---HHHHHHHTTSC-CSEEEEESSCSSSCHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeC---CH---HHHHHHHhcCC-CCEEEEecCCCCCCHHH
Confidence 356888888888888889888888887654222 22 23444444433 35566655433 24544
No 477
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.77 E-value=48 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.0
Q ss_pred eeeecCCCCcHHHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVAT 211 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~ 211 (666)
++|..++|+|||..+=.++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46778899999988777654
No 478
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.77 E-value=2.7e+02 Score=21.68 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCEEEEEec------cHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHhc
Q 005980 475 VLDYLETVIEAGCKFLIFAH------HQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEFQ 533 (666)
Q Consensus 475 l~~~l~~~~~~g~KvlVF~~------~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 533 (666)
+.+.+..... ..+++||+. +-.....+...|...|+.|..++=......+..+...+.
T Consensus 6 ~~~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 6 LEERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp HHHHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 4455555544 447888874 556788899999999999988887777666666666553
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=22.73 E-value=49 Score=29.91 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.7
Q ss_pred eeeecCCCCcHHHHHHHHHHhcC
Q 005980 192 ILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+.|...+|+|||..+-.++..+.
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 56788899999999888877654
No 480
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=22.36 E-value=2.8e+02 Score=21.57 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=8.2
Q ss_pred CCCCcchhhhhhhhh
Q 005980 565 LSWTPGDLIQAEDRA 579 (666)
Q Consensus 565 ~~wnp~~~~Qa~gR~ 579 (666)
-|+++..+.+++.++
T Consensus 104 KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 104 KPFQPSRVVEALNKV 118 (120)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 455555555555554
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=22.32 E-value=43 Score=36.16 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..++|..++|+|||..|-+++..+.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999988887763
No 482
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=22.29 E-value=77 Score=33.56 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHHHHHH--HcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEe----CCcchHHHHHHHHHH
Q 005980 179 RDGVRFAL--QHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILT----PSSLRLHWAAMIQQW 238 (666)
Q Consensus 179 ~~~v~~~~--~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~----P~sl~~qW~~e~~~~ 238 (666)
..++..++ -+|.+..|-.+-|.|||..++..+.......-..|++ ..+-+.+..+++...
T Consensus 150 ikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 46777775 3455655555599999999886665544433333333 123345555666654
No 483
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=22.27 E-value=30 Score=34.92 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 183 RFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 183 ~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
..+++....+|+| ..||+|||.++.+
T Consensus 79 ~~~l~G~n~tifAYGqTGSGKTyTm~g 105 (349)
T 3t0q_A 79 QSSLDGYNVCIFAYGQTGSGKTYTMLN 105 (349)
T ss_dssp HGGGTTCEEEEEEECSTTSSHHHHHHS
T ss_pred HHHHCCcceeEEEeCCCCCCCceEeCC
Confidence 3334423344554 8899999999863
No 484
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=22.25 E-value=49 Score=30.02 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=15.5
Q ss_pred eeeecCCCCcHHHHHHHHHH
Q 005980 192 ILLADEMGLGKTIQAIAVAT 211 (666)
Q Consensus 192 ~iLad~~GlGKTi~ala~~~ 211 (666)
+.|...+|+|||..+=.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45677899999988776654
No 485
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.20 E-value=74 Score=35.38 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 181 GVRFALQH--GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 181 ~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
|.+.|+.. +..+|+..|.|+|||..+=-++.++
T Consensus 84 Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 84 AYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp HHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 44445543 4468999999999999886666655
No 486
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=22.16 E-value=36 Score=34.76 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHHHHcCCCeeee-cCCCCcHHHHHHH
Q 005980 183 RFALQHGGRILLA-DEMGLGKTIQAIA 208 (666)
Q Consensus 183 ~~~~~~~~~~iLa-d~~GlGKTi~ala 208 (666)
..+++....+|+| ..||+|||.++.+
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHhcCCCceEEEEeCCCCCCCceEeec
Confidence 3334433344554 7899999998864
No 487
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=21.93 E-value=1.5e+02 Score=29.90 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHcCCCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEEeCCcc
Q 005980 184 FALQHGGRILLADEMGLGKTIQAIAVATCFRDVWPVLILTPSSL 227 (666)
Q Consensus 184 ~~~~~~~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv~P~sl 227 (666)
.+......+++..++|+||+..|-++.....+..+++.|-...+
T Consensus 147 ~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~ 190 (368)
T 3dzd_A 147 KIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI 190 (368)
T ss_dssp HHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS
T ss_pred hhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC
Confidence 33344667899999999999988877666555555544433333
No 488
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=21.91 E-value=3.6e+02 Score=26.20 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=61.0
Q ss_pred cCCccccHHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHHHHh----CCceEEEEECCCCHHHHHHHHHHhcCCCCc
Q 005980 465 TDSAEAKIPAVLDYLETVIE--AGCKFLIFAHHQPMLDAIHQLFLK----KKVHCIRIDGGTPPASRQALVTEFQEKDDV 538 (666)
Q Consensus 465 ~~~~~~Kl~~l~~~l~~~~~--~g~KvlVF~~~~~~~~~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~ 538 (666)
..++++|--...-.+..... .+.++||.++....+..+.+.+.. .++.+..++|+....+....+. + .
T Consensus 51 ~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~--~ 124 (367)
T 1hv8_A 51 ARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK----N--A 124 (367)
T ss_dssp CCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH----T--C
T ss_pred CCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC----C--C
Confidence 34678888765555544433 477999999998877777766655 4778889999887554433332 2 2
Q ss_pred eEEEEeccccc-----cccCcccCCEEEEecCC
Q 005980 539 KAAVLSMKAGG-----VGLTLTAASTVIFAELS 566 (666)
Q Consensus 539 ~v~L~st~a~~-----~GlnL~~a~~VI~~d~~ 566 (666)
.+++.+...+- ..+++...+.||+=+.+
T Consensus 125 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp SEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred CEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 55666554332 12456677777775543
No 489
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=21.91 E-value=63 Score=32.70 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=17.1
Q ss_pred HHHHcCCCe--eeecCCCCcHHHHHHH
Q 005980 184 FALQHGGRI--LLADEMGLGKTIQAIA 208 (666)
Q Consensus 184 ~~~~~~~~~--iLad~~GlGKTi~ala 208 (666)
.++..|..+ +--..||+|||.++.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEec
Confidence 344434443 4558899999999875
No 490
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=21.83 E-value=53 Score=32.58 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHhcCCC
Q 005980 198 MGLGKTIQAIAVATCFRDV 216 (666)
Q Consensus 198 ~GlGKTi~ala~~~~~~~~ 216 (666)
=|+|||=.++.++..+++.
T Consensus 47 GGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SCCSHHHHHHHHHHHTTTS
T ss_pred CCCChHHHHHHHHHHHhhc
Confidence 4899999999999988643
No 491
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=21.61 E-value=1.1e+02 Score=22.97 Aligned_cols=37 Identities=5% Similarity=0.103 Sum_probs=27.6
Q ss_pred HcCCEEEEEeccHHHHHHHHHHHHhCCce-EEEEECCCC
Q 005980 484 EAGCKFLIFAHHQPMLDAIHQLFLKKKVH-CIRIDGGTP 521 (666)
Q Consensus 484 ~~g~KvlVF~~~~~~~~~l~~~L~~~g~~-~~~i~G~~~ 521 (666)
..+.+++++|..-.........|...|+. +..+ |+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45788999998866677788889999985 4445 6643
No 492
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.53 E-value=1.8e+02 Score=25.26 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=37.5
Q ss_pred cCCEEEEEe----ccHHHHHHHHHHHHhCCceEEEEECCCCHHHHHHHHHHh
Q 005980 485 AGCKFLIFA----HHQPMLDAIHQLFLKKKVHCIRIDGGTPPASRQALVTEF 532 (666)
Q Consensus 485 ~g~KvlVF~----~~~~~~~~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 532 (666)
...|+++++ .|.--+.++...|+..|+.+..+...++.++-.+.+..+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~ 68 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE 68 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc
Confidence 457888886 455568899999999999998888888877766666555
No 493
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=21.43 E-value=1.7e+02 Score=27.80 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=56.8
Q ss_pred hcCCccccHHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHHHHhCC----ceEEEEECCCCHHHHHHHHHHhcCCCCc
Q 005980 464 YTDSAEAKIPAVLDYLETVIEAGC-KFLIFAHHQPMLDAIHQLFLKKK----VHCIRIDGGTPPASRQALVTEFQEKDDV 538 (666)
Q Consensus 464 ~~~~~~~Kl~~l~~~l~~~~~~g~-KvlVF~~~~~~~~~l~~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~ 538 (666)
...++++|-....-.+......+. ++||.+.....++...+.+.+.+ ..+..+.|+.+..+ ....+.
T Consensus 134 ~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 205 (282)
T 1rif_A 134 NLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------KYKNDA 205 (282)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT--------CCCTTC
T ss_pred EcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh--------hhccCC
Confidence 345678888777666666555554 99999999888777777776643 35666777654322 111223
Q ss_pred eEEEEeccccccc--cCcccCCEEEEecCC
Q 005980 539 KAAVLSMKAGGVG--LTLTAASTVIFAELS 566 (666)
Q Consensus 539 ~v~L~st~a~~~G--lnL~~a~~VI~~d~~ 566 (666)
.+++.+...+..- ..+...+.||+=+.+
T Consensus 206 ~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH 235 (282)
T 1rif_A 206 PVVVGTWQTVVKQPKEWFSQFGMMMNDECH 235 (282)
T ss_dssp SEEEECHHHHTTSCGGGGGGEEEEEEETGG
T ss_pred cEEEEchHHHHhhHHHHHhhCCEEEEECCc
Confidence 5666666544322 123455666665444
No 494
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.38 E-value=2e+02 Score=24.09 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=38.8
Q ss_pred hCCceEEEEECCCCHHHHHHHHHHhcCC---CCceEEEEecccccc----ccCcccCCEEEEecCCCCcchhhhhhhhhh
Q 005980 508 KKKVHCIRIDGGTPPASRQALVTEFQEK---DDVKAAVLSMKAGGV----GLTLTAASTVIFAELSWTPGDLIQAEDRAH 580 (666)
Q Consensus 508 ~~g~~~~~i~G~~~~~~R~~~i~~F~~~---~~~~v~L~st~a~~~----GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 580 (666)
...+..+.+|-.+|.-+=-++++..+.. .++.++++|.....+ ++.. +|+. ++.=|.++..+.+++.|+.
T Consensus 55 ~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~-Ga~~--yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 55 KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQA-GVNG--YIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHT-TCCE--EEESSCCHHHHHHHHHHHC
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHC-CCCE--EEECCCCHHHHHHHHHHHH
Confidence 3456677777777766655666655432 334566666543321 1221 1222 2335677777777777765
Q ss_pred c
Q 005980 581 R 581 (666)
Q Consensus 581 R 581 (666)
|
T Consensus 132 ~ 132 (134)
T 3to5_A 132 E 132 (134)
T ss_dssp C
T ss_pred h
Confidence 4
No 495
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=21.26 E-value=1.2e+02 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCeeeecCCCCcHHHHHHHHHHhcCCCCcEEEE
Q 005980 190 GRILLADEMGLGKTIQAIAVATCFRDVWPVLIL 222 (666)
Q Consensus 190 ~~~iLad~~GlGKTi~ala~~~~~~~~~~~LIv 222 (666)
..+++....|+|||-.+..++.......++.+|
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i 71 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACI 71 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 345666779999998888887765433444333
No 496
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=21.26 E-value=58 Score=29.53 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred CeeeecCCCCcHHHHHHHHHHhc
Q 005980 191 RILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~ 213 (666)
.+.|...+|+|||..+-.++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 34577789999999888777654
No 497
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.11 E-value=3e+02 Score=22.05 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=32.3
Q ss_pred ceEEEEECCCCHHHHHHHHHHhcCC--CCceEEEEeccccccc-cCcccCCEEEEecCCCCcchhhhhhhhhhcc
Q 005980 511 VHCIRIDGGTPPASRQALVTEFQEK--DDVKAAVLSMKAGGVG-LTLTAASTVIFAELSWTPGDLIQAEDRAHRI 582 (666)
Q Consensus 511 ~~~~~i~G~~~~~~R~~~i~~F~~~--~~~~v~L~st~a~~~G-lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 582 (666)
+.++.++-.++...-.++++..+.. +.+.+++++...-..- ...-.+...-++.-|.++..+.+++.|+.+-
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 5566666555544444555555443 3344455443322111 1111112222233456666666666666553
No 498
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=20.84 E-value=1.3e+02 Score=30.40 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=24.0
Q ss_pred CeeeecCCCCcHHHHHHHHHHhcC-CCCcEEEEe
Q 005980 191 RILLADEMGLGKTIQAIAVATCFR-DVWPVLILT 223 (666)
Q Consensus 191 ~~iLad~~GlGKTi~ala~~~~~~-~~~~~LIv~ 223 (666)
-+.|..+.|+|||..+-.++..+. ..+.+++..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 355778899999988777776654 356677765
No 499
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.68 E-value=55 Score=30.76 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=20.6
Q ss_pred CCCeeeecCCCCcHHHHHHHHHHhcC
Q 005980 189 GGRILLADEMGLGKTIQAIAVATCFR 214 (666)
Q Consensus 189 ~~~~iLad~~GlGKTi~ala~~~~~~ 214 (666)
+..+.|..+.|+|||.++=.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678889999999998887776553
No 500
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=20.60 E-value=83 Score=35.38 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=23.4
Q ss_pred HHHHHHHc--CCCeeeecCCCCcHHHHHHHHHHhc
Q 005980 181 GVRFALQH--GGRILLADEMGLGKTIQAIAVATCF 213 (666)
Q Consensus 181 ~v~~~~~~--~~~~iLad~~GlGKTi~ala~~~~~ 213 (666)
|.+.|+.. +..+|+..|.|+|||..+=-++.++
T Consensus 162 Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl 196 (770)
T 1w9i_A 162 AYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL 196 (770)
T ss_dssp HHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHH
Confidence 44445543 4468999999999999876665554
Done!