Query 005981
Match_columns 666
No_of_seqs 725 out of 3691
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 16:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1E-138 2E-143 1125.8 34.0 500 158-661 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 9E-29 1.9E-33 269.6 7.9 193 448-663 33-262 (506)
3 PLN02336 phosphoethanolamine N 99.9 7.6E-22 1.6E-26 221.6 18.5 320 260-622 27-369 (475)
4 PRK10258 biotin biosynthesis p 99.7 1.8E-16 3.9E-21 163.5 15.6 179 257-464 29-209 (251)
5 COG2226 UbiE Methylase involve 99.6 3.6E-15 7.8E-20 152.4 13.9 115 257-377 38-157 (238)
6 PF01209 Ubie_methyltran: ubiE 99.6 1E-14 2.2E-19 149.5 10.7 104 273-377 46-154 (233)
7 PF08241 Methyltransf_11: Meth 99.5 8.9E-15 1.9E-19 126.1 6.7 92 279-374 1-95 (95)
8 PRK01544 bifunctional N5-gluta 99.5 1.3E-12 2.7E-17 148.2 22.3 118 519-641 348-483 (506)
9 KOG2940 Predicted methyltransf 99.5 3.6E-14 7.7E-19 141.1 6.5 186 258-463 58-251 (325)
10 PLN02233 ubiquinone biosynthes 99.5 3.9E-13 8.5E-18 140.1 13.3 103 274-377 73-183 (261)
11 PTZ00098 phosphoethanolamine N 99.4 4.4E-13 9.6E-18 139.8 11.9 119 253-377 35-157 (263)
12 PLN02244 tocopherol O-methyltr 99.4 7.1E-13 1.5E-17 143.3 13.1 120 256-377 99-224 (340)
13 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.5E-13 3.3E-18 138.9 7.1 102 274-377 59-162 (243)
14 TIGR02072 BioC biotin biosynth 99.4 1.5E-12 3.2E-17 131.7 13.3 178 258-463 19-200 (240)
15 PRK15068 tRNA mo(5)U34 methylt 99.4 1.5E-12 3.2E-17 139.8 13.1 113 259-377 111-227 (322)
16 TIGR00740 methyltransferase, p 99.4 3.8E-12 8.2E-17 130.6 14.5 102 274-377 53-162 (239)
17 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.7E-12 3.6E-17 134.1 11.9 101 274-377 56-165 (247)
18 PRK14103 trans-aconitate 2-met 99.4 2.8E-12 6.1E-17 132.8 13.5 105 259-376 18-126 (255)
19 PRK01683 trans-aconitate 2-met 99.4 2.5E-12 5.5E-17 133.0 12.9 108 258-376 19-130 (258)
20 KOG4300 Predicted methyltransf 99.4 5.1E-12 1.1E-16 124.4 13.6 117 276-394 78-199 (252)
21 PLN02396 hexaprenyldihydroxybe 99.4 1.3E-12 2.9E-17 139.8 9.7 102 274-377 131-236 (322)
22 TIGR02752 MenG_heptapren 2-hep 99.4 9.9E-12 2.1E-16 126.3 15.3 113 259-377 34-152 (231)
23 KOG1540 Ubiquinone biosynthesi 99.4 8.8E-12 1.9E-16 126.3 13.8 105 273-379 99-217 (296)
24 PF13489 Methyltransf_23: Meth 99.3 1.8E-12 3.9E-17 123.0 8.1 95 273-378 21-117 (161)
25 PF12847 Methyltransf_18: Meth 99.3 4E-12 8.6E-17 114.0 9.6 101 275-376 2-111 (112)
26 PRK11207 tellurite resistance 99.3 7.9E-12 1.7E-16 124.9 11.6 99 275-375 31-133 (197)
27 PRK05785 hypothetical protein; 99.3 1E-11 2.2E-16 126.9 12.4 87 275-370 52-141 (226)
28 PRK11036 putative S-adenosyl-L 99.3 6E-12 1.3E-16 130.4 10.7 102 274-377 44-150 (255)
29 PF13847 Methyltransf_31: Meth 99.3 9.3E-12 2E-16 118.7 11.0 101 274-377 3-111 (152)
30 TIGR00477 tehB tellurite resis 99.3 9.8E-12 2.1E-16 124.0 11.4 99 275-375 31-132 (195)
31 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.4E-17 115.7 2.6 93 279-372 1-99 (99)
32 TIGR00452 methyltransferase, p 99.3 2.4E-11 5.2E-16 129.7 12.3 112 260-377 111-226 (314)
33 PRK11088 rrmA 23S rRNA methylt 99.3 2.3E-11 5E-16 127.4 11.8 100 274-387 85-191 (272)
34 PLN02490 MPBQ/MSBQ methyltrans 99.3 6.9E-11 1.5E-15 127.3 15.6 100 274-377 113-216 (340)
35 PLN02336 phosphoethanolamine N 99.3 4.5E-11 9.8E-16 134.6 14.0 102 274-377 266-370 (475)
36 PRK08317 hypothetical protein; 99.2 7.2E-11 1.6E-15 119.1 13.1 116 256-377 5-125 (241)
37 PRK11873 arsM arsenite S-adeno 99.2 4.8E-11 1E-15 124.7 11.6 102 274-377 77-184 (272)
38 PF08241 Methyltransf_11: Meth 99.2 9.9E-12 2.2E-16 107.0 5.3 90 523-620 1-95 (95)
39 PF13649 Methyltransf_25: Meth 99.2 1.2E-11 2.6E-16 109.8 4.7 92 278-370 1-101 (101)
40 COG2230 Cfa Cyclopropane fatty 99.2 9E-11 1.9E-15 122.5 11.9 132 244-381 46-181 (283)
41 PF02353 CMAS: Mycolic acid cy 99.2 6.6E-11 1.4E-15 124.2 10.7 126 244-377 36-167 (273)
42 PRK12335 tellurite resistance 99.2 7.9E-11 1.7E-15 124.4 10.5 98 276-375 122-222 (287)
43 PRK00107 gidB 16S rRNA methylt 99.2 3.3E-10 7.2E-15 112.6 13.5 96 275-377 46-146 (187)
44 PF03848 TehB: Tellurite resis 99.2 2.2E-10 4.7E-15 114.0 12.0 100 275-376 31-133 (192)
45 TIGR03587 Pse_Me-ase pseudamin 99.1 2.8E-10 6E-15 114.6 11.0 96 274-377 43-143 (204)
46 smart00828 PKS_MT Methyltransf 99.1 1.8E-10 4E-15 116.5 9.8 98 277-377 2-105 (224)
47 KOG1270 Methyltransferases [Co 99.1 5.3E-11 1.1E-15 121.5 5.5 98 275-377 90-196 (282)
48 PRK00121 trmB tRNA (guanine-N( 99.1 3.3E-10 7.1E-15 113.7 11.0 102 274-377 40-157 (202)
49 PRK06922 hypothetical protein; 99.1 1.9E-10 4.1E-15 131.4 10.0 102 275-377 419-538 (677)
50 TIGR00406 prmA ribosomal prote 99.1 6.8E-10 1.5E-14 117.5 12.6 99 274-377 159-260 (288)
51 COG4106 Tam Trans-aconitate me 99.1 2.3E-10 5.1E-15 113.6 8.3 132 259-406 19-154 (257)
52 PLN02585 magnesium protoporphy 99.1 8.5E-10 1.8E-14 118.0 13.2 181 254-453 125-313 (315)
53 TIGR02469 CbiT precorrin-6Y C5 99.1 1.3E-09 2.8E-14 99.0 12.3 98 274-376 19-122 (124)
54 KOG1271 Methyltransferases [Ge 99.1 1E-09 2.2E-14 106.4 11.7 131 257-390 50-193 (227)
55 PF05401 NodS: Nodulation prot 99.1 4E-10 8.6E-15 111.5 8.4 102 273-377 42-147 (201)
56 PF08003 Methyltransf_9: Prote 99.0 1.1E-09 2.3E-14 114.8 11.5 112 259-378 104-221 (315)
57 TIGR03840 TMPT_Se_Te thiopurin 99.0 8.7E-10 1.9E-14 111.8 10.6 103 275-377 35-153 (213)
58 PRK11705 cyclopropane fatty ac 99.0 8.3E-10 1.8E-14 121.3 11.0 112 256-377 153-268 (383)
59 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.2E-09 4.7E-14 107.6 13.0 113 258-377 27-144 (223)
60 TIGR00138 gidB 16S rRNA methyl 99.0 2.3E-09 5E-14 106.0 12.1 95 275-376 43-142 (181)
61 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.1E-09 2.4E-14 109.1 9.8 101 275-377 17-133 (194)
62 smart00138 MeTrc Methyltransfe 99.0 6E-10 1.3E-14 116.5 8.1 103 274-376 99-242 (264)
63 PRK11188 rrmJ 23S rRNA methylt 99.0 1.9E-09 4E-14 109.0 11.2 92 274-377 51-166 (209)
64 PF02353 CMAS: Mycolic acid cy 99.0 3.1E-10 6.8E-15 119.1 5.5 114 505-621 51-165 (273)
65 PF05175 MTS: Methyltransferas 99.0 1.2E-09 2.6E-14 106.6 9.3 100 275-377 32-141 (170)
66 PRK09489 rsmC 16S ribosomal RN 99.0 1.2E-09 2.6E-14 118.2 10.1 99 276-377 198-304 (342)
67 PRK00216 ubiE ubiquinone/menaq 99.0 3.2E-09 7E-14 107.5 12.5 103 274-377 51-159 (239)
68 COG2264 PrmA Ribosomal protein 99.0 1.5E-09 3.3E-14 114.2 10.3 99 274-377 162-264 (300)
69 TIGR02021 BchM-ChlM magnesium 99.0 2.1E-09 4.5E-14 108.8 10.6 116 254-375 37-157 (219)
70 PF07021 MetW: Methionine bios 99.0 9.7E-10 2.1E-14 108.5 7.5 105 260-381 5-113 (193)
71 COG2226 UbiE Methylase involve 99.0 1.4E-09 3E-14 111.6 8.6 98 520-623 53-157 (238)
72 PTZ00098 phosphoethanolamine N 99.0 6.6E-10 1.4E-14 116.1 6.4 125 492-623 8-157 (263)
73 TIGR01983 UbiG ubiquinone bios 99.0 3.9E-09 8.4E-14 106.6 11.6 101 275-377 46-150 (224)
74 PF06325 PrmA: Ribosomal prote 99.0 2.4E-09 5.2E-14 113.4 10.5 97 274-377 161-260 (295)
75 TIGR00537 hemK_rel_arch HemK-r 99.0 6.9E-09 1.5E-13 101.8 13.0 99 276-377 21-141 (179)
76 COG4976 Predicted methyltransf 99.0 1.7E-10 3.7E-15 115.4 1.5 98 273-376 124-225 (287)
77 PRK07580 Mg-protoporphyrin IX 99.0 4.1E-09 8.8E-14 106.8 11.7 113 256-373 46-163 (230)
78 PRK00517 prmA ribosomal protei 99.0 5.7E-09 1.2E-13 108.2 12.8 93 274-377 119-214 (250)
79 PRK14967 putative methyltransf 99.0 1E-08 2.3E-13 104.3 14.5 101 274-376 36-159 (223)
80 PRK00107 gidB 16S rRNA methylt 99.0 1E-08 2.2E-13 102.0 14.0 148 500-662 28-187 (187)
81 PRK06202 hypothetical protein; 99.0 1.5E-09 3.2E-14 111.0 8.2 97 274-376 60-166 (232)
82 PRK05134 bifunctional 3-demeth 98.9 4.7E-09 1E-13 107.0 11.6 102 274-377 48-152 (233)
83 PRK08287 cobalt-precorrin-6Y C 98.9 1.5E-08 3.2E-13 100.1 14.6 96 274-376 31-131 (187)
84 PRK13944 protein-L-isoaspartat 98.9 7.1E-09 1.5E-13 104.3 11.8 108 257-376 59-173 (205)
85 KOG1541 Predicted protein carb 98.9 6.6E-09 1.4E-13 103.6 11.2 115 257-378 35-162 (270)
86 PLN02244 tocopherol O-methyltr 98.9 2.7E-09 5.8E-14 115.5 9.0 96 519-622 119-223 (340)
87 PLN02233 ubiquinone biosynthes 98.9 3.3E-09 7E-14 110.8 9.3 96 520-622 75-182 (261)
88 PRK10258 biotin biosynthesis p 98.9 4.6E-09 1E-13 108.4 10.1 97 518-622 42-140 (251)
89 PRK15001 SAM-dependent 23S rib 98.9 4.1E-09 8.8E-14 115.2 9.9 99 276-376 230-340 (378)
90 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.1E-09 1.7E-13 112.8 12.1 101 274-376 122-235 (390)
91 PF01209 Ubie_methyltran: ubiE 98.9 1.6E-09 3.4E-14 111.3 5.7 113 499-622 33-153 (233)
92 PRK13255 thiopurine S-methyltr 98.9 8.1E-09 1.8E-13 105.1 10.2 98 275-376 38-155 (218)
93 PRK11207 tellurite resistance 98.9 3.6E-09 7.8E-14 105.8 7.4 115 520-644 32-168 (197)
94 PRK14103 trans-aconitate 2-met 98.9 4.9E-09 1.1E-13 108.6 8.5 100 510-621 23-125 (255)
95 PLN03075 nicotianamine synthas 98.9 1.4E-08 2.9E-13 107.3 11.5 102 274-376 123-233 (296)
96 PRK11036 putative S-adenosyl-L 98.9 2.6E-09 5.7E-14 110.7 6.1 94 520-621 46-148 (255)
97 PRK13942 protein-L-isoaspartat 98.9 1.8E-08 3.9E-13 102.0 11.8 108 257-376 63-176 (212)
98 TIGR03534 RF_mod_PrmC protein- 98.8 4.4E-08 9.6E-13 100.4 14.6 116 254-376 72-217 (251)
99 TIGR03438 probable methyltrans 98.8 2.8E-08 6.1E-13 105.8 13.3 115 275-390 64-190 (301)
100 TIGR00080 pimt protein-L-isoas 98.8 2.3E-08 4.9E-13 101.2 12.0 107 258-376 65-177 (215)
101 PLN02396 hexaprenyldihydroxybe 98.8 2.5E-09 5.5E-14 114.7 5.2 94 521-622 134-235 (322)
102 KOG3010 Methyltransferase [Gen 98.8 2.8E-09 6.1E-14 107.7 4.9 93 276-375 35-135 (261)
103 TIGR02081 metW methionine bios 98.8 1.7E-08 3.6E-13 100.4 10.0 86 275-368 14-104 (194)
104 PF13489 Methyltransf_23: Meth 98.8 2.8E-09 6E-14 101.1 4.2 93 520-624 24-117 (161)
105 COG2813 RsmC 16S RNA G1207 met 98.8 1.5E-08 3.3E-13 106.3 10.0 111 260-377 148-267 (300)
106 cd02440 AdoMet_MTases S-adenos 98.8 2.6E-08 5.6E-13 85.1 9.6 99 277-375 1-103 (107)
107 PRK12335 tellurite resistance 98.8 1.2E-08 2.5E-13 108.0 8.4 115 521-645 123-258 (287)
108 PRK07402 precorrin-6B methylas 98.8 6.7E-08 1.4E-12 96.3 13.2 110 258-377 28-143 (196)
109 TIGR02716 C20_methyl_CrtF C-20 98.8 3.5E-08 7.5E-13 105.1 11.8 101 273-377 148-255 (306)
110 TIGR01177 conserved hypothetic 98.8 4.8E-08 1E-12 105.3 12.8 103 274-377 182-295 (329)
111 TIGR00477 tehB tellurite resis 98.8 7E-09 1.5E-13 103.5 5.6 117 520-645 32-168 (195)
112 PRK14968 putative methyltransf 98.8 1.1E-07 2.4E-12 92.9 13.9 101 274-376 23-148 (188)
113 PF13659 Methyltransf_26: Meth 98.8 1.1E-08 2.3E-13 92.6 6.0 100 276-376 2-115 (117)
114 smart00828 PKS_MT Methyltransf 98.8 1.8E-08 4E-13 101.9 8.3 114 521-643 2-141 (224)
115 TIGR02752 MenG_heptapren 2-hep 98.8 8.1E-08 1.8E-12 97.7 13.0 103 512-623 41-152 (231)
116 PRK00312 pcm protein-L-isoaspa 98.7 9.4E-08 2E-12 96.3 12.0 107 258-376 66-175 (212)
117 TIGR00438 rrmJ cell division p 98.7 1.4E-07 3.1E-12 93.3 12.5 104 260-377 21-147 (188)
118 PRK00377 cbiT cobalt-precorrin 98.7 9.5E-08 2.1E-12 95.5 11.2 99 273-376 39-145 (198)
119 PF05219 DREV: DREV methyltran 98.7 8.9E-08 1.9E-12 98.5 10.9 121 246-376 66-188 (265)
120 PRK15001 SAM-dependent 23S rib 98.7 9.3E-06 2E-10 89.1 26.8 129 520-661 230-373 (378)
121 COG4123 Predicted O-methyltran 98.7 1E-07 2.2E-12 98.1 10.9 102 275-377 45-171 (248)
122 PRK13256 thiopurine S-methyltr 98.7 1.2E-07 2.6E-12 96.9 11.3 104 274-377 43-164 (226)
123 PRK04266 fibrillarin; Provisio 98.7 8.7E-08 1.9E-12 98.1 10.3 97 273-375 71-175 (226)
124 PF05148 Methyltransf_8: Hypot 98.7 8.4E-08 1.8E-12 95.8 9.7 99 259-377 60-159 (219)
125 PF03848 TehB: Tellurite resis 98.7 1.9E-08 4.1E-13 100.2 5.0 121 521-645 33-168 (192)
126 PF12847 Methyltransf_18: Meth 98.7 1.4E-08 3E-13 91.0 3.7 97 521-622 4-111 (112)
127 PLN02232 ubiquinone biosynthes 98.7 6.5E-08 1.4E-12 93.6 8.3 79 298-377 1-82 (160)
128 TIGR00452 methyltransferase, p 98.7 8.4E-08 1.8E-12 102.7 9.8 116 520-643 123-270 (314)
129 PRK15068 tRNA mo(5)U34 methylt 98.7 2.8E-08 6E-13 106.9 6.2 94 520-621 124-225 (322)
130 PRK11705 cyclopropane fatty ac 98.6 5.5E-08 1.2E-12 107.0 8.3 101 510-621 161-266 (383)
131 PRK05785 hypothetical protein; 98.6 8.4E-08 1.8E-12 98.1 9.1 87 520-616 53-141 (226)
132 PRK00811 spermidine synthase; 98.6 3.5E-07 7.6E-12 96.7 13.2 103 273-376 75-191 (283)
133 COG2230 Cfa Cyclopropane fatty 98.6 7E-08 1.5E-12 101.0 7.5 101 509-621 65-175 (283)
134 PRK01683 trans-aconitate 2-met 98.6 1.5E-07 3.3E-12 97.4 10.0 114 519-641 32-153 (258)
135 PF03291 Pox_MCEL: mRNA cappin 98.6 2E-07 4.3E-12 100.6 10.8 104 274-377 62-187 (331)
136 PRK09328 N5-glutamine S-adenos 98.6 5.8E-07 1.3E-11 93.7 14.1 116 256-376 94-238 (275)
137 TIGR00537 hemK_rel_arch HemK-r 98.6 2.4E-07 5.3E-12 90.9 10.3 118 521-646 22-165 (179)
138 PRK14966 unknown domain/N5-glu 98.6 7.5E-07 1.6E-11 98.2 15.0 116 254-376 237-381 (423)
139 KOG2361 Predicted methyltransf 98.6 1.7E-07 3.6E-12 95.1 9.0 102 276-377 73-184 (264)
140 PRK00121 trmB tRNA (guanine-N( 98.6 9.1E-08 2E-12 96.1 7.0 124 519-645 41-180 (202)
141 PRK14968 putative methyltransf 98.6 2.5E-07 5.4E-12 90.4 10.0 135 520-661 25-188 (188)
142 PF13847 Methyltransf_31: Meth 98.6 8.7E-08 1.9E-12 91.4 6.1 97 520-624 5-112 (152)
143 TIGR03533 L3_gln_methyl protei 98.6 2.9E-07 6.2E-12 97.4 10.5 100 275-376 122-251 (284)
144 COG4976 Predicted methyltransf 98.6 5.4E-08 1.2E-12 97.7 4.6 141 514-662 121-286 (287)
145 PTZ00146 fibrillarin; Provisio 98.6 2E-07 4.4E-12 98.2 9.1 111 259-375 118-236 (293)
146 TIGR00138 gidB 16S rRNA methyl 98.6 1.1E-07 2.5E-12 94.0 6.7 107 520-637 44-157 (181)
147 TIGR00536 hemK_fam HemK family 98.5 7.5E-07 1.6E-11 94.1 13.2 99 276-376 116-244 (284)
148 PRK11783 rlmL 23S rRNA m(2)G24 98.5 5.7E-07 1.2E-11 106.3 13.5 123 520-646 540-680 (702)
149 PRK10901 16S rRNA methyltransf 98.5 4.4E-07 9.6E-12 101.3 11.6 103 274-377 244-373 (427)
150 PRK00517 prmA ribosomal protei 98.5 7.8E-07 1.7E-11 92.3 11.9 127 520-662 121-250 (250)
151 PLN02490 MPBQ/MSBQ methyltrans 98.5 3.2E-07 6.9E-12 99.2 9.1 118 520-644 115-254 (340)
152 smart00650 rADc Ribosomal RNA 98.5 3.7E-07 8E-12 88.9 8.7 96 274-375 13-112 (169)
153 PRK08317 hypothetical protein; 98.5 4.8E-07 1E-11 91.2 9.5 106 510-622 13-124 (241)
154 PRK11805 N5-glutamine S-adenos 98.5 4.7E-07 1E-11 96.8 9.9 99 276-376 135-263 (307)
155 KOG1975 mRNA cap methyltransfe 98.5 3.7E-07 7.9E-12 95.8 8.5 103 274-377 117-238 (389)
156 PRK08287 cobalt-precorrin-6Y C 98.5 9E-07 2E-11 87.4 11.0 118 510-640 25-150 (187)
157 KOG3045 Predicted RNA methylas 98.5 4.5E-07 9.7E-12 92.6 8.8 86 274-377 180-265 (325)
158 TIGR00740 methyltransferase, p 98.5 1.5E-07 3.3E-12 96.6 5.6 95 520-623 55-162 (239)
159 PF08242 Methyltransf_12: Meth 98.5 1.3E-07 2.8E-12 83.3 4.0 90 523-618 1-99 (99)
160 PF05401 NodS: Nodulation prot 98.5 6.3E-07 1.4E-11 89.0 9.0 138 513-659 38-192 (201)
161 TIGR03704 PrmC_rel_meth putati 98.4 2.8E-06 6E-11 88.4 14.2 118 254-377 69-217 (251)
162 PRK13943 protein-L-isoaspartat 98.4 1.1E-06 2.5E-11 94.4 11.6 107 258-376 68-180 (322)
163 PRK15451 tRNA cmo(5)U34 methyl 98.4 1.8E-07 4E-12 96.7 5.3 95 520-623 58-165 (247)
164 TIGR00563 rsmB ribosomal RNA s 98.4 3.8E-07 8.2E-12 101.8 8.2 103 274-377 238-369 (426)
165 TIGR02072 BioC biotin biosynth 98.4 2.5E-07 5.4E-12 93.5 6.1 97 520-622 36-135 (240)
166 TIGR00446 nop2p NOL1/NOP2/sun 98.4 6E-07 1.3E-11 94.0 8.7 103 274-377 71-200 (264)
167 PRK04457 spermidine synthase; 98.4 1.2E-06 2.7E-11 91.5 11.0 116 257-375 52-176 (262)
168 PRK14901 16S rRNA methyltransf 98.4 4.6E-07 1E-11 101.4 8.1 103 274-377 252-385 (434)
169 COG2890 HemK Methylase of poly 98.4 4.6E-06 9.9E-11 88.1 15.0 107 277-387 113-247 (280)
170 TIGR00417 speE spermidine synt 98.4 3.4E-06 7.4E-11 88.5 13.8 102 274-376 72-186 (270)
171 TIGR00406 prmA ribosomal prote 98.4 7.9E-07 1.7E-11 94.2 9.1 116 520-646 161-283 (288)
172 PRK14904 16S rRNA methyltransf 98.4 1E-06 2.2E-11 98.9 10.4 102 274-377 250-378 (445)
173 PRK14903 16S rRNA methyltransf 98.4 7E-07 1.5E-11 99.8 9.0 103 274-377 237-367 (431)
174 PRK11188 rrmJ 23S rRNA methylt 98.4 1.2E-06 2.5E-11 88.7 9.5 133 521-661 54-206 (209)
175 PRK11088 rrmA 23S rRNA methylt 98.4 2.7E-07 5.9E-12 96.7 5.0 95 520-624 87-183 (272)
176 KOG1540 Ubiquinone biosynthesi 98.4 1.1E-06 2.3E-11 89.9 9.0 112 519-637 101-230 (296)
177 COG2227 UbiG 2-polyprenyl-3-me 98.4 3E-07 6.4E-12 93.6 4.9 92 522-622 63-161 (243)
178 PRK11873 arsM arsenite S-adeno 98.4 4.7E-07 1E-11 94.7 6.5 96 521-622 80-183 (272)
179 PF05891 Methyltransf_PK: AdoM 98.4 8E-07 1.7E-11 89.6 7.4 103 274-376 55-161 (218)
180 PF13649 Methyltransf_25: Meth 98.4 1.1E-07 2.3E-12 84.4 0.8 94 522-616 1-101 (101)
181 PF01135 PCMT: Protein-L-isoas 98.3 1.7E-06 3.6E-11 87.6 9.3 108 256-376 58-172 (209)
182 PF02390 Methyltransf_4: Putat 98.3 1.5E-06 3.2E-11 87.1 8.7 99 276-376 19-133 (195)
183 PRK06922 hypothetical protein; 98.3 5E-07 1.1E-11 103.8 5.9 101 520-623 420-538 (677)
184 PLN02366 spermidine synthase 98.3 5.4E-06 1.2E-10 88.7 13.0 103 273-376 90-206 (308)
185 TIGR00091 tRNA (guanine-N(7)-) 98.3 1.2E-06 2.7E-11 87.3 7.4 120 520-642 18-154 (194)
186 PRK04266 fibrillarin; Provisio 98.3 7.1E-06 1.5E-10 84.1 13.0 142 510-662 66-226 (226)
187 PRK06202 hypothetical protein; 98.3 1.5E-06 3.2E-11 88.9 8.0 99 518-622 60-166 (232)
188 COG2242 CobL Precorrin-6B meth 98.3 1.7E-05 3.6E-10 78.3 14.8 97 273-376 33-135 (187)
189 PHA03411 putative methyltransf 98.3 2.3E-06 5E-11 89.5 9.3 95 275-375 65-182 (279)
190 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 2.9E-06 6.4E-11 84.9 9.5 98 520-622 41-143 (223)
191 TIGR00438 rrmJ cell division p 98.3 2.8E-06 6E-11 84.1 9.2 136 521-661 35-187 (188)
192 PRK13168 rumA 23S rRNA m(5)U19 98.3 3.8E-06 8.3E-11 94.3 11.1 111 257-377 284-401 (443)
193 PF06080 DUF938: Protein of un 98.3 2.8E-06 6.1E-11 85.2 8.8 114 257-377 13-142 (204)
194 PRK00216 ubiE ubiquinone/menaq 98.3 6.5E-06 1.4E-10 83.3 11.3 98 520-622 53-158 (239)
195 PRK14902 16S rRNA methyltransf 98.3 4.4E-06 9.5E-11 93.8 11.0 102 274-377 250-380 (444)
196 smart00138 MeTrc Methyltransfe 98.2 2.1E-06 4.5E-11 90.0 7.7 130 492-625 71-245 (264)
197 COG2518 Pcm Protein-L-isoaspar 98.2 8.4E-06 1.8E-10 81.9 11.1 106 258-376 60-169 (209)
198 COG0220 Predicted S-adenosylme 98.2 4.1E-06 8.9E-11 85.8 8.9 99 276-376 50-164 (227)
199 PRK05134 bifunctional 3-demeth 98.2 1.7E-06 3.6E-11 88.2 6.0 94 521-622 51-151 (233)
200 TIGR03587 Pse_Me-ase pseudamin 98.2 2.1E-06 4.6E-11 86.5 6.2 93 520-622 45-142 (204)
201 TIGR02469 CbiT precorrin-6Y C5 98.2 5.7E-06 1.2E-10 74.9 8.4 100 511-621 14-121 (124)
202 PRK00377 cbiT cobalt-precorrin 98.2 9.3E-06 2E-10 81.1 10.6 137 497-644 20-168 (198)
203 PRK09328 N5-glutamine S-adenos 98.2 8.5E-06 1.8E-10 85.0 10.8 135 520-661 110-275 (275)
204 COG2519 GCD14 tRNA(1-methylade 98.2 2.2E-05 4.8E-10 80.7 13.2 97 273-377 93-196 (256)
205 PF00891 Methyltransf_2: O-met 98.2 4.1E-06 8.9E-11 86.0 8.0 94 274-377 100-200 (241)
206 PTZ00146 fibrillarin; Provisio 98.2 1.3E-05 2.7E-10 84.8 11.7 101 512-621 128-236 (293)
207 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.5E-05 3.2E-10 80.2 11.8 120 252-377 34-160 (199)
208 PRK03522 rumB 23S rRNA methylu 98.2 7.1E-06 1.5E-10 88.0 10.1 98 275-377 174-275 (315)
209 PRK01581 speE spermidine synth 98.2 8.3E-06 1.8E-10 88.5 10.5 103 273-376 149-268 (374)
210 PF05724 TPMT: Thiopurine S-me 98.2 5E-06 1.1E-10 84.7 8.2 103 273-375 36-154 (218)
211 PRK14121 tRNA (guanine-N(7)-)- 98.2 7.7E-06 1.7E-10 89.7 10.1 117 521-642 125-257 (390)
212 PRK15128 23S rRNA m(5)C1962 me 98.2 2.6E-05 5.7E-10 86.3 14.5 102 275-377 221-340 (396)
213 TIGR03840 TMPT_Se_Te thiopurin 98.2 3E-06 6.5E-11 86.1 6.4 121 520-646 36-187 (213)
214 PRK03612 spermidine synthase; 98.2 1.3E-05 2.9E-10 91.7 12.3 104 273-377 296-416 (521)
215 PRK13255 thiopurine S-methyltr 98.1 4.8E-06 1E-10 84.8 7.7 118 521-645 40-189 (218)
216 TIGR01983 UbiG ubiquinone bios 98.1 2.3E-06 5E-11 86.4 5.3 95 520-622 47-149 (224)
217 TIGR02021 BchM-ChlM magnesium 98.1 8.5E-06 1.8E-10 82.5 9.4 134 499-644 39-204 (219)
218 TIGR03534 RF_mod_PrmC protein- 98.1 8.8E-06 1.9E-10 83.4 9.5 118 520-642 89-237 (251)
219 PF06325 PrmA: Ribosomal prote 98.1 6.4E-06 1.4E-10 87.5 8.4 127 521-662 164-295 (295)
220 PHA03412 putative methyltransf 98.1 8.7E-06 1.9E-10 83.5 8.8 91 275-371 50-158 (241)
221 PRK14967 putative methyltransf 98.1 9.8E-06 2.1E-10 82.5 9.2 117 521-643 39-181 (223)
222 TIGR00080 pimt protein-L-isoas 98.1 5.7E-06 1.2E-10 83.7 7.1 100 508-621 69-176 (215)
223 KOG4300 Predicted methyltransf 98.1 4.6E-06 1E-10 82.9 6.0 128 501-636 53-201 (252)
224 PLN02781 Probable caffeoyl-CoA 98.1 1.8E-05 3.9E-10 81.5 10.4 97 275-376 69-178 (234)
225 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.1E-05 2.5E-10 95.4 9.8 102 275-377 539-657 (702)
226 PF01739 CheR: CheR methyltran 98.1 7.3E-06 1.6E-10 82.2 6.6 102 274-375 31-174 (196)
227 PRK09489 rsmC 16S ribosomal RN 98.0 1.8E-05 3.8E-10 86.0 9.9 130 521-662 199-337 (342)
228 PRK13944 protein-L-isoaspartat 98.0 1.1E-05 2.5E-10 81.1 7.9 98 508-622 64-173 (205)
229 COG2264 PrmA Ribosomal protein 98.0 3.3E-05 7.1E-10 81.8 11.5 130 518-661 162-299 (300)
230 COG0500 SmtA SAM-dependent met 98.0 4.6E-05 1E-09 67.5 10.9 97 278-377 52-156 (257)
231 TIGR00479 rumA 23S rRNA (uraci 98.0 1.9E-05 4.1E-10 88.3 10.2 98 274-376 292-396 (431)
232 TIGR00536 hemK_fam HemK family 98.0 2.7E-05 5.9E-10 82.3 10.8 135 520-662 116-283 (284)
233 TIGR00478 tly hemolysin TlyA f 98.0 1.1E-05 2.5E-10 82.6 7.6 92 274-376 75-171 (228)
234 TIGR02081 metW methionine bios 98.0 6E-06 1.3E-10 82.1 5.3 87 521-615 16-105 (194)
235 TIGR02716 C20_methyl_CrtF C-20 98.0 8.5E-06 1.8E-10 86.8 6.8 100 518-623 149-255 (306)
236 KOG2899 Predicted methyltransf 98.0 1.2E-05 2.6E-10 81.8 7.3 101 274-375 58-208 (288)
237 PF12147 Methyltransf_20: Puta 98.0 6.1E-05 1.3E-09 78.9 12.7 167 201-382 70-255 (311)
238 PF05175 MTS: Methyltransferas 98.0 1.3E-05 2.8E-10 78.2 7.4 118 520-646 33-162 (170)
239 PRK10611 chemotaxis methyltran 98.0 8.9E-06 1.9E-10 86.1 6.4 100 276-375 117-261 (287)
240 COG2890 HemK Methylase of poly 98.0 3.7E-05 8E-10 81.3 10.9 154 495-661 93-276 (280)
241 KOG1270 Methyltransferases [Co 98.0 5.2E-06 1.1E-10 85.4 4.2 93 520-623 91-196 (282)
242 KOG3010 Methyltransferase [Gen 98.0 7.6E-06 1.7E-10 83.2 5.2 113 519-640 34-158 (261)
243 KOG2904 Predicted methyltransf 98.0 6.4E-05 1.4E-09 77.8 11.7 132 255-390 130-298 (328)
244 PF05148 Methyltransf_8: Hypot 98.0 8.2E-05 1.8E-09 74.7 12.2 121 520-661 74-197 (219)
245 PRK14966 unknown domain/N5-glu 98.0 4E-05 8.7E-10 84.7 10.9 135 521-662 254-419 (423)
246 PF07021 MetW: Methionine bios 97.9 7E-06 1.5E-10 81.4 4.1 113 521-644 16-165 (193)
247 PF00891 Methyltransf_2: O-met 97.9 1.6E-05 3.4E-10 81.7 6.7 100 514-623 96-200 (241)
248 PRK07402 precorrin-6B methylas 97.9 6.4E-05 1.4E-09 74.9 10.8 116 510-639 34-160 (196)
249 TIGR03704 PrmC_rel_meth putati 97.9 3.6E-05 7.7E-10 80.1 9.2 124 520-649 88-243 (251)
250 cd02440 AdoMet_MTases S-adenos 97.9 1.3E-05 2.9E-10 68.1 5.0 94 521-621 1-103 (107)
251 PRK11727 23S rRNA mA1618 methy 97.9 7.8E-05 1.7E-09 80.2 11.9 98 254-351 90-202 (321)
252 TIGR02085 meth_trns_rumB 23S r 97.9 3.8E-05 8.3E-10 84.4 9.7 98 275-377 234-335 (374)
253 PRK07580 Mg-protoporphyrin IX 97.9 1.9E-05 4.1E-10 79.9 6.5 93 520-621 65-165 (230)
254 TIGR01177 conserved hypothetic 97.9 4.1E-05 9E-10 82.6 9.4 121 510-639 176-309 (329)
255 PRK13942 protein-L-isoaspartat 97.9 2.7E-05 5.8E-10 78.9 7.5 97 509-621 69-175 (212)
256 PF08704 GCD14: tRNA methyltra 97.9 7.8E-05 1.7E-09 77.4 11.0 98 273-377 39-147 (247)
257 COG1041 Predicted DNA modifica 97.9 3.8E-05 8.3E-10 82.5 8.7 104 273-377 196-311 (347)
258 PRK01544 bifunctional N5-gluta 97.9 3.6E-05 7.9E-10 87.8 8.7 103 272-376 345-462 (506)
259 KOG1499 Protein arginine N-met 97.8 3.6E-05 7.8E-10 82.3 7.7 98 274-373 60-164 (346)
260 TIGR03438 probable methyltrans 97.8 5E-05 1.1E-09 81.0 8.8 98 520-621 65-176 (301)
261 PF07942 N2227: N2227-like pro 97.8 6.3E-05 1.4E-09 78.8 9.2 148 256-406 38-239 (270)
262 TIGR03533 L3_gln_methyl protei 97.8 4.4E-05 9.6E-10 80.8 7.8 120 520-645 123-273 (284)
263 KOG1331 Predicted methyltransf 97.8 1.3E-05 2.9E-10 83.4 3.7 96 275-376 46-143 (293)
264 PRK14896 ksgA 16S ribosomal RN 97.8 6E-05 1.3E-09 78.7 8.5 86 257-351 16-103 (258)
265 PRK00274 ksgA 16S ribosomal RN 97.8 4.7E-05 1E-09 80.1 7.5 83 257-346 29-113 (272)
266 PF01728 FtsJ: FtsJ-like methy 97.8 9.2E-05 2E-09 72.7 9.1 143 514-661 19-180 (181)
267 PRK11805 N5-glutamine S-adenos 97.8 8.2E-05 1.8E-09 79.7 9.4 113 520-638 135-278 (307)
268 COG4122 Predicted O-methyltran 97.8 0.00014 3E-09 74.1 10.3 98 274-376 59-166 (219)
269 PRK00312 pcm protein-L-isoaspa 97.8 8.5E-05 1.8E-09 74.9 8.5 95 509-621 71-174 (212)
270 PF10294 Methyltransf_16: Puta 97.8 8.4E-05 1.8E-09 73.0 8.2 102 273-377 44-157 (173)
271 PLN02672 methionine S-methyltr 97.7 0.00017 3.6E-09 88.1 12.2 100 275-376 119-278 (1082)
272 PF05185 PRMT5: PRMT5 arginine 97.7 0.00012 2.5E-09 82.3 10.0 116 255-373 163-294 (448)
273 COG4123 Predicted O-methyltran 97.7 0.00021 4.6E-09 73.9 11.0 120 519-643 45-191 (248)
274 PF08003 Methyltransf_9: Prote 97.7 4.8E-05 1E-09 80.4 6.2 114 520-641 117-262 (315)
275 COG0421 SpeE Spermidine syntha 97.7 0.00027 6E-09 74.7 11.8 134 258-393 61-207 (282)
276 PRK04457 spermidine synthase; 97.7 0.00018 3.9E-09 75.4 10.2 137 518-661 66-216 (262)
277 PF01596 Methyltransf_3: O-met 97.7 0.00013 2.8E-09 73.7 8.7 97 275-376 46-155 (205)
278 TIGR00755 ksgA dimethyladenosi 97.7 0.00023 4.9E-09 74.0 10.7 86 257-351 16-106 (253)
279 PLN02476 O-methyltransferase 97.7 7.4E-05 1.6E-09 78.7 7.0 98 274-376 118-228 (278)
280 PF02390 Methyltransf_4: Putat 97.7 3.5E-05 7.6E-10 77.2 4.3 117 521-642 20-156 (195)
281 COG4106 Tam Trans-aconitate me 97.7 9.1E-05 2E-09 74.4 6.8 119 514-644 26-155 (257)
282 COG1352 CheR Methylase of chem 97.7 0.00021 4.5E-09 75.0 9.8 103 274-376 96-241 (268)
283 PLN02823 spermine synthase 97.6 0.00057 1.2E-08 74.1 12.8 102 274-376 103-220 (336)
284 KOG1541 Predicted protein carb 97.6 0.00032 7E-09 70.7 9.7 127 509-640 41-178 (270)
285 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00016 3.5E-09 79.7 8.3 95 276-376 59-158 (382)
286 PRK04148 hypothetical protein; 97.6 0.00018 3.9E-09 67.8 7.1 100 260-376 6-109 (134)
287 KOG3045 Predicted RNA methylas 97.6 0.001 2.2E-08 68.6 12.8 109 521-649 183-294 (325)
288 KOG3987 Uncharacterized conser 97.6 4.8E-05 1E-09 75.7 3.2 120 244-375 84-206 (288)
289 PTZ00338 dimethyladenosine tra 97.6 0.00021 4.6E-09 76.1 8.3 88 257-351 23-113 (294)
290 PF05891 Methyltransf_PK: AdoM 97.5 0.00031 6.7E-09 71.1 8.7 129 517-649 54-204 (218)
291 COG2263 Predicted RNA methylas 97.5 0.00041 8.8E-09 68.6 9.2 89 274-366 45-137 (198)
292 PF13659 Methyltransf_26: Meth 97.5 2.6E-05 5.6E-10 70.4 0.8 96 521-621 3-114 (117)
293 TIGR00095 RNA methyltransferas 97.5 0.00099 2.1E-08 66.5 12.0 117 254-376 32-159 (189)
294 KOG1269 SAM-dependent methyltr 97.5 0.00013 2.9E-09 79.6 6.0 99 275-375 111-214 (364)
295 PF02527 GidB: rRNA small subu 97.5 0.0021 4.5E-08 64.0 14.0 93 277-376 51-148 (184)
296 PLN02232 ubiquinone biosynthes 97.5 9.6E-05 2.1E-09 71.5 4.3 69 553-624 6-83 (160)
297 PF11968 DUF3321: Putative met 97.5 0.0003 6.5E-09 71.1 7.6 106 256-377 33-150 (219)
298 COG2813 RsmC 16S RNA G1207 met 97.4 0.0064 1.4E-07 64.5 17.3 138 509-662 151-300 (300)
299 PRK00536 speE spermidine synth 97.4 0.0024 5.2E-08 66.9 14.0 111 258-377 57-172 (262)
300 KOG3178 Hydroxyindole-O-methyl 97.4 0.00036 7.9E-09 74.9 7.8 96 275-377 178-276 (342)
301 PF02475 Met_10: Met-10+ like- 97.4 0.00058 1.2E-08 68.8 8.8 126 235-373 68-199 (200)
302 KOG1661 Protein-L-isoaspartate 97.4 0.00047 1E-08 69.1 7.8 108 259-375 69-192 (237)
303 KOG3191 Predicted N6-DNA-methy 97.4 0.0013 2.8E-08 64.6 10.4 103 273-377 42-169 (209)
304 PLN02585 magnesium protoporphy 97.4 0.00031 6.6E-09 75.6 6.7 93 520-619 146-247 (315)
305 PF01170 UPF0020: Putative RNA 97.4 0.00068 1.5E-08 67.0 8.4 101 274-375 28-150 (179)
306 PF05219 DREV: DREV methyltran 97.3 0.00038 8.3E-09 72.1 6.8 91 518-621 94-187 (265)
307 PRK00811 spermidine synthase; 97.3 0.00094 2E-08 70.7 10.0 99 518-621 76-190 (283)
308 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00069 1.5E-08 70.6 8.5 104 273-376 55-199 (256)
309 PLN02781 Probable caffeoyl-CoA 97.3 0.00044 9.5E-09 71.3 6.9 126 519-662 69-233 (234)
310 COG3963 Phospholipid N-methylt 97.3 0.00067 1.4E-08 65.8 7.5 111 257-376 35-156 (194)
311 PRK14902 16S rRNA methyltransf 97.3 0.00077 1.7E-08 75.8 9.2 125 512-641 246-403 (444)
312 PF01564 Spermine_synth: Sperm 97.3 0.0012 2.6E-08 68.6 9.9 103 273-376 75-191 (246)
313 PRK01581 speE spermidine synth 97.3 0.00094 2E-08 72.8 9.4 142 517-662 149-314 (374)
314 TIGR00446 nop2p NOL1/NOP2/sun 97.3 0.00056 1.2E-08 71.7 7.5 122 511-636 66-217 (264)
315 PRK11933 yebU rRNA (cytosine-C 97.3 0.0022 4.7E-08 72.6 12.5 103 273-376 112-242 (470)
316 PLN02589 caffeoyl-CoA O-methyl 97.3 0.00098 2.1E-08 69.3 8.7 97 275-376 80-190 (247)
317 PRK13943 protein-L-isoaspartat 97.3 0.00066 1.4E-08 73.2 7.7 100 509-622 73-180 (322)
318 COG2242 CobL Precorrin-6B meth 97.3 0.0073 1.6E-07 59.9 14.2 138 492-642 7-157 (187)
319 PRK14903 16S rRNA methyltransf 97.2 0.00059 1.3E-08 76.5 7.3 119 511-636 232-384 (431)
320 PRK10901 16S rRNA methyltransf 97.2 0.00065 1.4E-08 76.1 7.5 121 511-636 239-390 (427)
321 PRK14904 16S rRNA methyltransf 97.2 0.00081 1.7E-08 75.7 8.2 119 511-637 245-396 (445)
322 PF09243 Rsm22: Mitochondrial 97.2 0.0022 4.9E-08 67.6 11.0 112 257-377 20-140 (274)
323 PRK14901 16S rRNA methyltransf 97.2 0.00083 1.8E-08 75.4 7.9 126 511-641 247-408 (434)
324 TIGR00563 rsmB ribosomal RNA s 97.2 0.0008 1.7E-08 75.3 7.7 119 511-636 233-386 (426)
325 TIGR00417 speE spermidine synt 97.2 0.002 4.4E-08 67.7 10.0 99 519-621 73-185 (270)
326 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0013 2.9E-08 72.1 8.8 96 276-378 208-322 (362)
327 TIGR02143 trmA_only tRNA (urac 97.1 0.0014 3.1E-08 71.6 8.7 95 276-377 199-312 (353)
328 COG0220 Predicted S-adenosylme 97.1 0.00085 1.9E-08 68.9 6.3 117 521-642 51-189 (227)
329 KOG1271 Methyltransferases [Ge 97.1 0.0018 3.9E-08 63.7 7.9 117 521-641 70-200 (227)
330 KOG2361 Predicted methyltransf 97.1 0.00084 1.8E-08 68.6 5.8 103 521-625 74-186 (264)
331 PF03602 Cons_hypoth95: Conser 97.1 0.0011 2.4E-08 65.8 6.6 121 252-377 22-154 (183)
332 KOG2352 Predicted spermine/spe 97.0 0.0017 3.7E-08 72.4 8.4 100 277-377 51-162 (482)
333 PF05185 PRMT5: PRMT5 arginine 97.0 0.0013 2.8E-08 74.0 7.6 127 491-620 153-295 (448)
334 TIGR03439 methyl_EasF probable 97.0 0.0078 1.7E-07 64.9 12.9 125 258-390 66-210 (319)
335 PF01728 FtsJ: FtsJ-like methy 97.0 0.0061 1.3E-07 59.8 11.2 114 258-379 8-142 (181)
336 COG2265 TrmA SAM-dependent met 97.0 0.0024 5.2E-08 71.6 9.2 123 249-377 268-397 (432)
337 KOG1500 Protein arginine N-met 97.0 0.0027 5.8E-08 67.5 8.9 111 258-375 165-281 (517)
338 PLN02366 spermidine synthase 97.0 0.0048 1E-07 66.2 11.1 102 517-621 90-205 (308)
339 COG2521 Predicted archaeal met 97.0 0.00061 1.3E-08 69.3 3.9 103 273-376 133-245 (287)
340 TIGR00478 tly hemolysin TlyA f 97.0 0.0019 4.1E-08 66.4 7.5 107 520-644 77-215 (228)
341 COG1092 Predicted SAM-dependen 96.9 0.0055 1.2E-07 67.7 11.2 110 275-385 218-345 (393)
342 KOG2904 Predicted methyltransf 96.9 0.0057 1.2E-07 63.7 10.5 157 496-661 128-327 (328)
343 COG2521 Predicted archaeal met 96.9 0.002 4.3E-08 65.7 6.7 132 520-662 136-287 (287)
344 PLN03075 nicotianamine synthas 96.9 0.002 4.4E-08 68.5 7.0 137 518-662 123-275 (296)
345 KOG3420 Predicted RNA methylas 96.9 0.0015 3.2E-08 62.0 5.2 74 273-347 47-123 (185)
346 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0018 4E-08 69.0 6.7 117 256-377 32-184 (311)
347 PRK13256 thiopurine S-methyltr 96.9 0.0029 6.2E-08 65.0 7.6 92 521-620 46-161 (226)
348 COG0742 N6-adenine-specific me 96.9 0.01 2.2E-07 59.1 11.2 132 240-377 12-155 (187)
349 PF02527 GidB: rRNA small subu 96.8 0.0079 1.7E-07 59.9 10.4 136 496-645 26-174 (184)
350 PHA03411 putative methyltransf 96.8 0.0019 4.1E-08 68.0 6.0 93 521-621 67-182 (279)
351 PRK03612 spermidine synthase; 96.8 0.0037 8.1E-08 71.8 8.8 122 518-642 297-440 (521)
352 PF10672 Methyltrans_SAM: S-ad 96.8 0.0081 1.8E-07 63.8 10.4 102 275-377 124-239 (286)
353 COG0030 KsgA Dimethyladenosine 96.8 0.0044 9.5E-08 64.7 8.1 88 257-351 17-107 (259)
354 TIGR00479 rumA 23S rRNA (uraci 96.7 0.0065 1.4E-07 68.0 9.8 111 521-643 295-417 (431)
355 PLN02476 O-methyltransferase 96.7 0.0039 8.4E-08 65.9 7.1 132 518-662 118-278 (278)
356 PF06080 DUF938: Protein of un 96.6 0.0065 1.4E-07 61.3 8.0 133 521-661 28-204 (204)
357 COG0500 SmtA SAM-dependent met 96.6 0.0066 1.4E-07 53.6 6.9 94 522-624 52-157 (257)
358 PF05724 TPMT: Thiopurine S-me 96.6 0.017 3.7E-07 59.0 10.7 131 507-645 28-189 (218)
359 PRK04148 hypothetical protein; 96.6 0.014 3.1E-07 55.0 9.3 92 520-647 18-111 (134)
360 PF03291 Pox_MCEL: mRNA cappin 96.5 0.0021 4.6E-08 69.6 4.0 124 501-632 44-198 (331)
361 KOG0820 Ribosomal RNA adenine 96.5 0.012 2.5E-07 61.5 9.1 84 258-351 46-135 (315)
362 smart00650 rADc Ribosomal RNA 96.5 0.0056 1.2E-07 59.5 6.5 100 511-622 8-113 (169)
363 PF01596 Methyltransf_3: O-met 96.5 0.003 6.5E-08 63.9 4.7 134 517-662 44-205 (205)
364 TIGR02987 met_A_Alw26 type II 96.5 0.015 3.2E-07 66.9 10.9 76 274-349 31-123 (524)
365 KOG1663 O-methyltransferase [S 96.5 0.015 3.2E-07 59.4 9.4 97 275-376 74-183 (237)
366 PRK15128 23S rRNA m(5)C1962 me 96.4 0.0069 1.5E-07 67.2 7.6 121 520-644 222-367 (396)
367 PRK11760 putative 23S rRNA C24 96.4 0.04 8.7E-07 59.7 12.8 106 273-391 210-321 (357)
368 COG2520 Predicted methyltransf 96.4 0.015 3.3E-07 63.0 9.8 127 239-377 159-290 (341)
369 COG0357 GidB Predicted S-adeno 96.4 0.026 5.6E-07 57.5 10.8 113 256-375 48-167 (215)
370 PF01135 PCMT: Protein-L-isoas 96.4 0.0036 7.8E-08 63.5 4.5 99 507-621 63-171 (209)
371 TIGR00308 TRM1 tRNA(guanine-26 96.4 0.0072 1.6E-07 66.6 7.2 94 276-375 46-146 (374)
372 PRK03522 rumB 23S rRNA methylu 96.3 0.015 3.3E-07 62.5 8.7 111 520-644 175-294 (315)
373 PRK13168 rumA 23S rRNA m(5)U19 96.2 0.027 5.8E-07 63.5 10.5 110 521-643 300-421 (443)
374 PHA03412 putative methyltransf 96.1 0.014 3E-07 60.3 7.3 96 521-620 52-160 (241)
375 COG0293 FtsJ 23S rRNA methylas 96.1 0.072 1.6E-06 53.8 11.9 109 255-377 29-160 (205)
376 COG0144 Sun tRNA and rRNA cyto 96.0 0.023 5E-07 62.3 8.7 104 273-377 155-289 (355)
377 KOG2915 tRNA(1-methyladenosine 96.0 0.077 1.7E-06 55.5 11.9 106 259-375 94-208 (314)
378 PF13679 Methyltransf_32: Meth 96.0 0.059 1.3E-06 51.0 10.4 101 273-382 24-137 (141)
379 COG2518 Pcm Protein-L-isoaspar 95.9 0.011 2.4E-07 59.8 5.3 99 505-621 61-168 (209)
380 KOG1499 Protein arginine N-met 95.8 0.013 2.9E-07 63.0 5.7 94 520-620 62-165 (346)
381 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.015 3.2E-07 63.7 6.2 60 257-322 184-245 (352)
382 COG0357 GidB Predicted S-adeno 95.7 0.087 1.9E-06 53.7 10.8 152 496-659 45-209 (215)
383 KOG1709 Guanidinoacetate methy 95.7 0.039 8.4E-07 55.8 8.0 112 256-375 88-205 (271)
384 KOG2798 Putative trehalase [Ca 95.6 0.023 5E-07 60.3 6.5 120 255-377 131-297 (369)
385 TIGR02085 meth_trns_rumB 23S r 95.6 0.027 5.8E-07 62.2 7.3 110 520-644 235-354 (374)
386 PRK00050 16S rRNA m(4)C1402 me 95.6 0.013 2.9E-07 62.4 4.7 50 258-311 7-61 (296)
387 COG2519 GCD14 tRNA(1-methylade 95.6 0.067 1.5E-06 55.5 9.6 113 511-640 89-214 (256)
388 KOG1975 mRNA cap methyltransfe 95.6 0.017 3.8E-07 61.4 5.4 53 581-633 195-250 (389)
389 COG3897 Predicted methyltransf 95.6 0.033 7.2E-07 55.6 6.9 100 274-379 79-181 (218)
390 COG1189 Predicted rRNA methyla 95.5 0.055 1.2E-06 55.6 8.5 96 273-378 78-180 (245)
391 KOG1269 SAM-dependent methyltr 95.5 0.012 2.6E-07 64.5 4.1 91 521-621 113-214 (364)
392 PF08123 DOT1: Histone methyla 95.5 0.031 6.6E-07 56.7 6.5 114 257-377 29-158 (205)
393 PF10294 Methyltransf_16: Puta 95.4 0.012 2.6E-07 57.7 3.4 98 517-622 44-156 (173)
394 PRK11760 putative 23S rRNA C24 95.4 0.17 3.6E-06 55.0 12.1 125 521-661 214-353 (357)
395 KOG2940 Predicted methyltransf 95.4 0.0099 2.1E-07 60.5 2.6 123 518-647 72-228 (325)
396 PF12147 Methyltransf_20: Puta 95.3 0.042 9.1E-07 58.1 7.1 127 516-644 133-277 (311)
397 PF01739 CheR: CheR methyltran 95.3 0.035 7.6E-07 55.8 6.1 128 494-624 5-177 (196)
398 COG5459 Predicted rRNA methyla 95.2 0.083 1.8E-06 56.9 9.0 116 257-377 100-226 (484)
399 PF01269 Fibrillarin: Fibrilla 95.2 0.064 1.4E-06 54.8 7.8 113 257-376 57-178 (229)
400 COG4122 Predicted O-methyltran 95.0 0.071 1.5E-06 54.5 7.6 130 518-662 59-218 (219)
401 COG4627 Uncharacterized protei 95.0 0.006 1.3E-07 58.6 -0.1 49 329-377 38-87 (185)
402 PRK11933 yebU rRNA (cytosine-C 95.0 0.047 1E-06 62.0 6.8 117 513-637 110-261 (470)
403 PLN02672 methionine S-methyltr 94.9 0.094 2E-06 64.8 9.5 118 521-641 121-298 (1082)
404 PLN02668 indole-3-acetate carb 94.9 0.09 2E-06 58.1 8.5 78 275-353 64-176 (386)
405 PF00398 RrnaAD: Ribosomal RNA 94.8 0.055 1.2E-06 56.7 6.2 103 256-368 16-123 (262)
406 PF01269 Fibrillarin: Fibrilla 94.7 0.092 2E-06 53.6 7.3 121 513-642 70-208 (229)
407 PF09445 Methyltransf_15: RNA 94.6 0.062 1.3E-06 52.5 5.6 68 277-345 2-76 (163)
408 PRK10909 rsmD 16S rRNA m(2)G96 94.4 0.034 7.4E-07 56.0 3.5 95 521-624 56-161 (199)
409 COG0116 Predicted N6-adenine-s 94.4 0.21 4.6E-06 54.9 9.7 102 275-377 192-345 (381)
410 KOG2187 tRNA uracil-5-methyltr 94.4 0.042 9E-07 61.9 4.4 72 250-322 359-432 (534)
411 COG1189 Predicted rRNA methyla 94.3 0.35 7.6E-06 49.9 10.4 132 520-661 81-242 (245)
412 PRK00536 speE spermidine synth 94.3 0.28 6.1E-06 51.6 10.1 91 515-621 69-170 (262)
413 PLN02823 spermine synthase 94.3 0.35 7.7E-06 52.7 11.2 101 518-621 103-219 (336)
414 TIGR02143 trmA_only tRNA (urac 93.9 0.15 3.3E-06 55.8 7.6 107 522-644 201-332 (353)
415 PF13578 Methyltransf_24: Meth 93.7 0.016 3.5E-07 51.6 -0.4 93 279-375 1-104 (106)
416 PF05971 Methyltransf_10: Prot 93.6 0.27 5.9E-06 52.5 8.6 98 254-351 81-190 (299)
417 COG4076 Predicted RNA methylas 93.6 0.07 1.5E-06 53.0 3.8 92 276-374 34-133 (252)
418 KOG3115 Methyltransferase-like 93.6 0.16 3.6E-06 51.0 6.4 128 500-633 46-195 (249)
419 KOG3201 Uncharacterized conser 93.5 0.065 1.4E-06 52.0 3.4 105 275-382 30-146 (201)
420 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.3 0.061 1.3E-06 57.1 3.2 104 273-377 84-220 (283)
421 PF07942 N2227: N2227-like pro 93.3 0.56 1.2E-05 49.5 10.2 46 600-645 180-241 (270)
422 PLN02589 caffeoyl-CoA O-methyl 93.3 0.25 5.3E-06 51.6 7.5 132 518-662 79-246 (247)
423 COG1064 AdhP Zn-dependent alco 93.3 0.23 5E-06 54.0 7.5 93 273-378 165-261 (339)
424 PRK00274 ksgA 16S ribosomal RN 93.2 0.13 2.9E-06 54.1 5.4 74 508-589 34-112 (272)
425 PF03492 Methyltransf_7: SAM d 93.0 0.27 5.8E-06 53.5 7.6 79 273-352 15-120 (334)
426 PRK14896 ksgA 16S ribosomal RN 93.0 0.18 3.9E-06 52.7 6.0 71 511-590 24-99 (258)
427 PF02475 Met_10: Met-10+ like- 92.9 0.061 1.3E-06 54.3 2.3 92 520-619 103-199 (200)
428 COG4262 Predicted spermidine s 92.7 0.39 8.5E-06 52.2 8.1 104 273-377 288-408 (508)
429 KOG3115 Methyltransferase-like 92.6 0.33 7.2E-06 48.9 6.9 30 276-305 62-95 (249)
430 TIGR01444 fkbM_fam methyltrans 92.5 0.13 2.9E-06 47.9 3.9 39 277-315 1-43 (143)
431 PF04816 DUF633: Family of unk 92.4 0.43 9.2E-06 48.4 7.6 94 278-376 1-101 (205)
432 KOG1122 tRNA and rRNA cytosine 92.2 1.3 2.8E-05 49.2 11.4 104 273-378 240-373 (460)
433 KOG3178 Hydroxyindole-O-methyl 92.0 0.65 1.4E-05 50.4 8.8 99 518-623 177-276 (342)
434 COG1889 NOP1 Fibrillarin-like 91.9 0.79 1.7E-05 46.3 8.5 96 273-375 75-179 (231)
435 COG4798 Predicted methyltransf 91.9 0.66 1.4E-05 46.6 7.9 101 273-377 47-167 (238)
436 PRK05031 tRNA (uracil-5-)-meth 91.6 0.44 9.5E-06 52.4 7.2 107 522-644 210-341 (362)
437 COG4627 Uncharacterized protei 91.5 0.038 8.2E-07 53.2 -1.1 41 580-621 45-85 (185)
438 PF03059 NAS: Nicotianamine sy 91.5 0.92 2E-05 48.1 9.1 102 274-376 120-230 (276)
439 KOG2899 Predicted methyltransf 91.4 0.39 8.5E-06 49.7 5.9 40 581-621 165-208 (288)
440 PF08704 GCD14: tRNA methyltra 91.2 0.69 1.5E-05 48.3 7.8 121 510-641 34-166 (247)
441 COG1889 NOP1 Fibrillarin-like 91.1 1.6 3.5E-05 44.1 9.8 136 512-661 72-228 (231)
442 KOG1331 Predicted methyltransf 90.9 0.14 3E-06 53.9 2.3 41 581-621 102-142 (293)
443 PF06962 rRNA_methylase: Putat 90.7 1.1 2.4E-05 42.8 7.9 84 296-379 1-95 (140)
444 TIGR00755 ksgA dimethyladenosi 90.7 0.43 9.3E-06 49.6 5.7 72 509-589 22-101 (253)
445 KOG4589 Cell division protein 90.2 1.7 3.6E-05 43.5 8.8 91 273-376 68-184 (232)
446 PF04672 Methyltransf_19: S-ad 90.0 2.3 4.9E-05 44.9 10.3 102 274-377 68-191 (267)
447 KOG0822 Protein kinase inhibit 89.3 0.72 1.6E-05 52.4 6.3 120 255-375 345-477 (649)
448 PRK04338 N(2),N(2)-dimethylgua 89.3 0.36 7.8E-06 53.5 4.0 90 521-621 60-157 (382)
449 COG3129 Predicted SAM-dependen 89.1 1.2 2.5E-05 46.0 7.0 112 240-351 41-166 (292)
450 KOG1661 Protein-L-isoaspartate 88.9 0.54 1.2E-05 47.7 4.5 84 522-621 86-192 (237)
451 COG0421 SpeE Spermidine syntha 88.7 1.5 3.2E-05 46.7 8.0 120 515-639 73-212 (282)
452 COG1092 Predicted SAM-dependen 87.4 1.7 3.8E-05 48.3 7.7 119 521-643 220-363 (393)
453 KOG3191 Predicted N6-DNA-methy 87.2 4.7 0.0001 40.3 9.7 126 519-646 44-193 (209)
454 PF05958 tRNA_U5-meth_tr: tRNA 87.1 2.8 6E-05 46.0 9.1 139 510-661 191-351 (352)
455 KOG2539 Mitochondrial/chloropl 87.1 1.4 3.1E-05 49.4 6.8 116 273-388 199-327 (491)
456 PRK00050 16S rRNA m(4)C1402 me 86.9 0.5 1.1E-05 50.6 3.1 76 510-589 13-97 (296)
457 PF01234 NNMT_PNMT_TEMT: NNMT/ 86.7 1.4 3.1E-05 46.1 6.3 83 579-661 155-256 (256)
458 COG0293 FtsJ 23S rRNA methylas 86.5 2.4 5.2E-05 43.0 7.5 133 521-661 48-200 (205)
459 PF01170 UPF0020: Putative RNA 86.3 1.7 3.7E-05 42.9 6.4 125 509-643 21-168 (179)
460 PRK10611 chemotaxis methyltran 86.2 0.57 1.2E-05 50.0 3.1 44 580-624 221-264 (287)
461 TIGR00095 RNA methyltransferas 86.1 0.6 1.3E-05 46.6 3.0 96 521-624 52-161 (189)
462 KOG2198 tRNA cytosine-5-methyl 85.8 2.6 5.7E-05 46.2 7.8 119 258-377 138-297 (375)
463 PF06859 Bin3: Bicoid-interact 85.5 0.48 1E-05 43.3 1.8 38 338-376 1-44 (110)
464 KOG1500 Protein arginine N-met 85.4 3.2 6.9E-05 44.9 8.0 116 517-640 176-307 (517)
465 PF07757 AdoMet_MTase: Predict 85.3 0.94 2E-05 41.3 3.5 29 274-302 58-88 (112)
466 PF01564 Spermine_synth: Sperm 85.2 3.3 7.2E-05 43.1 8.2 143 517-662 75-238 (246)
467 PF07091 FmrO: Ribosomal RNA m 85.0 3.6 7.7E-05 43.0 8.1 72 274-347 105-180 (251)
468 PRK11727 23S rRNA mA1618 methy 85.0 4.3 9.4E-05 44.0 9.1 24 516-539 112-135 (321)
469 PTZ00338 dimethyladenosine tra 84.9 1.3 2.7E-05 47.5 5.0 69 512-589 32-108 (294)
470 KOG2793 Putative N2,N2-dimethy 84.7 6 0.00013 41.3 9.6 104 508-620 77-197 (248)
471 KOG3201 Uncharacterized conser 84.6 1.2 2.6E-05 43.5 4.1 114 520-643 31-163 (201)
472 COG2384 Predicted SAM-dependen 84.4 13 0.00027 38.3 11.5 108 258-375 6-119 (226)
473 COG1041 Predicted DNA modifica 84.2 4.1 9E-05 44.4 8.5 122 510-643 191-327 (347)
474 PF11968 DUF3321: Putative met 83.9 2.2 4.8E-05 43.6 5.9 112 521-645 54-180 (219)
475 COG2263 Predicted RNA methylas 83.8 1.5 3.3E-05 43.9 4.6 110 521-642 48-164 (198)
476 KOG2793 Putative N2,N2-dimethy 83.4 5.9 0.00013 41.4 8.9 102 275-377 87-200 (248)
477 KOG2920 Predicted methyltransf 83.2 0.46 9.9E-06 50.2 0.7 120 253-376 96-234 (282)
478 PF13578 Methyltransf_24: Meth 82.6 0.23 4.9E-06 44.1 -1.5 96 523-622 1-105 (106)
479 KOG1924 RhoA GTPase effector D 81.9 1.8 4E-05 50.9 4.9 12 231-242 642-653 (1102)
480 COG4301 Uncharacterized conser 81.8 13 0.00028 38.9 10.4 100 275-376 79-193 (321)
481 PF03269 DUF268: Caenorhabditi 81.7 0.88 1.9E-05 44.4 2.0 42 336-377 61-112 (177)
482 PRK11524 putative methyltransf 81.2 4.7 0.0001 42.7 7.5 102 561-662 4-130 (284)
483 PF09243 Rsm22: Mitochondrial 81.1 4.9 0.00011 42.5 7.5 119 518-643 33-165 (274)
484 PF03514 GRAS: GRAS domain fam 80.8 20 0.00042 39.8 12.4 103 273-375 109-243 (374)
485 KOG1099 SAM-dependent methyltr 80.3 2 4.2E-05 44.3 4.0 91 275-376 42-163 (294)
486 PF06859 Bin3: Bicoid-interact 80.0 0.73 1.6E-05 42.1 0.7 38 583-621 2-43 (110)
487 COG0286 HsdM Type I restrictio 78.6 19 0.00042 41.3 11.9 117 255-376 171-326 (489)
488 KOG1596 Fibrillarin and relate 78.6 6.9 0.00015 40.7 7.3 112 258-377 141-262 (317)
489 KOG1663 O-methyltransferase [S 77.9 3.9 8.4E-05 42.2 5.3 95 520-621 75-182 (237)
490 KOG2730 Methylase [General fun 77.3 2.4 5.1E-05 43.5 3.5 84 257-344 80-171 (263)
491 PRK09880 L-idonate 5-dehydroge 76.7 8.7 0.00019 41.3 8.0 92 274-377 169-267 (343)
492 PRK09424 pntA NAD(P) transhydr 76.6 9.8 0.00021 43.9 8.7 99 273-377 163-286 (509)
493 PF13679 Methyltransf_32: Meth 76.5 3.1 6.8E-05 39.2 4.0 44 516-563 23-72 (141)
494 COG2265 TrmA SAM-dependent met 76.5 11 0.00025 42.5 9.1 113 521-640 296-414 (432)
495 PF01861 DUF43: Protein of unk 76.3 18 0.00039 37.7 9.7 94 274-370 44-142 (243)
496 KOG1924 RhoA GTPase effector D 76.3 2.5 5.5E-05 49.9 3.8 13 301-313 724-736 (1102)
497 cd08283 FDH_like_1 Glutathione 75.7 9.3 0.0002 41.9 8.1 97 274-376 184-306 (386)
498 PRK13699 putative methylase; P 75.3 4.6 0.0001 41.5 5.1 42 601-642 51-92 (227)
499 PF03269 DUF268: Caenorhabditi 75.1 2.2 4.7E-05 41.7 2.5 67 577-643 58-144 (177)
500 COG1063 Tdh Threonine dehydrog 75.1 3.8 8.1E-05 44.8 4.7 91 276-378 170-271 (350)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1e-138 Score=1125.80 Aligned_cols=500 Identities=59% Similarity=1.111 Sum_probs=480.3
Q ss_pred ceeccCCcHHHHHhcCCCcccchhccCCCCCCCCCccccCCCCCCCCCCcCCCCccccccCCCCCcccccccccCcchhc
Q 005981 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISK 237 (666)
Q Consensus 158 ~y~pc~d~~~~~~~~~~~~~~~~~er~C~~~~~~~~Clv~~P~~Y~~P~~wP~s~~~~W~~n~~~~~L~~~k~~q~W~~~ 237 (666)
|||||+|+.++++++++++++||+|||||+.+++++||||+|++|+.|++||+|||++|++|+||++|.++|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHH
Q 005981 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317 (666)
Q Consensus 238 ~g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~ 317 (666)
+|++|.||||||+|.+|+.+|+++|.++++.+..++..+++||||||+|+|+++|.+++|+++.+++.+.+++|+|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999876667888999999999999999999999999999999999999999999
Q ss_pred cCCCceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCC-CCHHHHHHHHHHHHHh
Q 005981 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396 (666)
Q Consensus 318 rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~-~~~~el~~~w~~~~~l 396 (666)
||+++++.....++|||++++||+|||+.|++.|..+...+|.|+.|+|||||+|+++.+|.+ .+.+++.+.|..|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999888778999999999999999999999998888999999999999999999999999 7778899999999999
Q ss_pred hhhhhhhhhhhcCceEEeecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCC---CCCCccccCcccCC
Q 005981 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLR 473 (666)
Q Consensus 397 ~~~l~W~~v~~~g~~~i~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~---g~g~~l~~WP~Rl~ 473 (666)
++.+||+.+.+.++++|||||.+++|+..|+.+..+++|+..++++.+||.+|++||+.+++. ..+.++.+||+||+
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 999999999999999999999999999999988999999888999999999999999999975 45679999999999
Q ss_pred CCccchhhhchhhhhhhhhhhhhhhHhHHHHHHHHHHhcc--cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeecc
Q 005981 474 TSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551 (666)
Q Consensus 474 ~~p~rL~~~~~~~~~~~~~~f~~d~~~w~~~v~~Y~~~l~--~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~ 551 (666)
++|+||.+..... .+.+.|.+|+++|+++|++|+++++ +++++||||||||||||||||||+++ +||||||||+
T Consensus 321 ~~P~rl~~~~~~g--~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~ 396 (506)
T PF03141_consen 321 AVPPRLSSGSIPG--ISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPV 396 (506)
T ss_pred cCchhhhcCCcCC--CCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccC--CceEEEeccc
Confidence 9999999854322 2469999999999999999999887 88999999999999999999999999 5799999999
Q ss_pred CCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHH
Q 005981 552 SGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQ 631 (666)
Q Consensus 552 ~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~ 631 (666)
.++|||++||||||||+||||||+|+|||||||||||++|||.+.+||++++||+||||||||||++||||+.+++++|+
T Consensus 397 ~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~ 476 (506)
T PF03141_consen 397 SGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVK 476 (506)
T ss_pred CCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 632 EIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 632 ~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+|+++|||+++++++|+|+.++||||+|||
T Consensus 477 ~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 477 KIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.95 E-value=9e-29 Score=269.57 Aligned_cols=193 Identities=20% Similarity=0.387 Sum_probs=151.1
Q ss_pred cchhhhcccCCCCCCC-ccccCcccCCC------CccchhhhchhhhhhhhhhhhhhhHhH---------HHHHHHHHHh
Q 005981 448 DLKACITRLPENGYGA-NVSLWPERLRT------SPDRLQSIQLDAFIARKELFKAESKYW---------NEIIESYVRA 511 (666)
Q Consensus 448 ~l~~~l~~L~~~g~g~-~l~~WP~Rl~~------~p~rL~~~~~~~~~~~~~~f~~d~~~w---------~~~v~~Y~~~ 511 (666)
....||-+.+ .|. .+.+||++++. |.++|...+..+ +|++.+++++ .+++++|...
T Consensus 33 ~~~~CLVp~P---~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~q-----nWv~~~gd~~~FPgggt~F~~Ga~~Yid~ 104 (506)
T PF03141_consen 33 ERLRCLVPPP---KGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQ-----NWVRVEGDKFRFPGGGTMFPHGADHYIDQ 104 (506)
T ss_pred CCCccccCCC---ccCCCCCCCCcccceeeecccCchHHhhhcccc-----cceeecCCEEEeCCCCccccCCHHHHHHH
Confidence 3456888777 454 68999999865 778888877665 7777666654 5788888744
Q ss_pred ----ccc--CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCC-
Q 005981 512 ----LHW--KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYP- 580 (666)
Q Consensus 512 ----l~~--~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp- 580 (666)
++. ..|.||.+||+|||+|+|||+|+++ +|.+|++.|.+. +++.|+|+|||+ ||++.+- .++ ||
T Consensus 105 i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~--rLP-fp~ 179 (506)
T PF03141_consen 105 IAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQ--RLP-FPS 179 (506)
T ss_pred HHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCcchhhhhhccc--ccc-CCc
Confidence 444 5689999999999999999999999 679999999985 799999999999 5554333 244 55
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe----------ChhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD----------SIDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d----------~~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
++||||||++....+...- ..+|+|+|||||||||||++. ..+.+++|++++++|||+...++.+
T Consensus 180 ~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~--- 254 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD--- 254 (506)
T ss_pred cchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC---
Confidence 9999999994444333221 379999999999999999972 3567999999999999999876642
Q ss_pred CCceEEEEEEeCC
Q 005981 651 HASYRILTADKRL 663 (666)
Q Consensus 651 ~~~e~~l~~~k~~ 663 (666)
+-|-||+.
T Consensus 255 -----~aIwqKp~ 262 (506)
T PF03141_consen 255 -----TAIWQKPT 262 (506)
T ss_pred -----EEEEeccC
Confidence 77888863
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.88 E-value=7.6e-22 Score=221.59 Aligned_cols=320 Identities=18% Similarity=0.236 Sum_probs=172.9
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc--CCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e--~Lpf~ 335 (666)
..+.+.+.. ....+|||||||+|.++..|++. +|+|+|+++.++..+.. .........+...++. .++++
T Consensus 27 ~~il~~l~~----~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLPP----YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcCc----cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCC
Confidence 444555542 23468999999999999999876 89999999998865532 1111112234444443 56788
Q ss_pred CCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEEe
Q 005981 336 SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i~ 414 (666)
+++||+|+|+.+++|+.++ ...+++++.|+|||||++++........ .++.. ..+...+
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~-------------------~~~~~~~ 160 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR-------------------KNNPTHY 160 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc-------------------cCCCCee
Confidence 8999999998887777332 4689999999999999999985422111 00000 0000000
Q ss_pred ecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCCccccCccc-CCC-Cccchhh-hchhhh----
Q 005981 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPER-LRT-SPDRLQS-IQLDAF---- 487 (666)
Q Consensus 415 ~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~~l~~WP~R-l~~-~p~rL~~-~~~~~~---- 487 (666)
.. ......++.++||..... ........+|..+-.... + ..+.++-.++.+ ++. --.++.. +..-+|
T Consensus 161 ~~-~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 234 (475)
T PLN02336 161 RE-PRFYTKVFKECHTRDEDG-NSFELSLVGCKCIGAYVK--N--KKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSG 234 (475)
T ss_pred cC-hHHHHHHHHHheeccCCC-CEEEEEEEEeechhhhhh--c--cCCcceEEEEEEeecCCcchhHHHHhhhhcccccc
Confidence 00 111222333444422111 001111222222211111 1 001111111111 000 0000000 000011
Q ss_pred hhhhhhhhhhhHhHHHHHH---HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHh
Q 005981 488 IARKELFKAESKYWNEIIE---SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD 562 (666)
Q Consensus 488 ~~~~~~f~~d~~~w~~~v~---~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~e 562 (666)
+...+.|....-.+...+. ...+.+.+.. -..|||+|||.|+.+..|++. ++ +|+.+| ++.++..+.+
T Consensus 235 i~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 235 ILRYERVFGEGFVSTGGLETTKEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDV-----HVVGIDLSVNMISFALE 307 (475)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHH
Confidence 1111222221111222221 2223333333 356999999999999999886 54 566666 3577777765
Q ss_pred c--cc---cccccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 563 R--GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 563 r--Gl---ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+ |+ +.+.+.-+...+ +| .+||+|+|.+++.|..+. +.+|.|+.|+|||||.++|.|
T Consensus 308 ~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 308 RAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTILHIQDK---PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcccccCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence 4 22 334333333222 44 789999999999888764 799999999999999999985
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=1.8e-16 Score=163.48 Aligned_cols=179 Identities=20% Similarity=0.309 Sum_probs=127.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
...+.+.+.++. ....+|||+|||+|.++..|... +|+++|+++.++..++. +.....+...|.+.+++
T Consensus 29 ~~a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~ 99 (251)
T PRK10258 29 QSADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcC
Confidence 344555565552 34578999999999999888765 89999999988765543 22222345567888999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEEe
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i~ 414 (666)
++++||+|+++.+ +||..++..+|.++.|+|||||.++++++ ...+..++.+.|..+........+..
T Consensus 100 ~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~~~~~~~---------- 167 (251)
T PRK10258 100 ATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPHANRFLP---------- 167 (251)
T ss_pred CCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCccccCCC----------
Confidence 9899999997765 77878999999999999999999999975 66777888877755432211111100
Q ss_pred ecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCCc
Q 005981 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 464 (666)
Q Consensus 415 ~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~~ 464 (666)
..+.-..++..++. ...+..+.+|+++.++|++|+.+|+++.
T Consensus 168 ---~~~l~~~l~~~~~~-----~~~~~~~~~f~~~~~~l~~lk~~G~~~~ 209 (251)
T PRK10258 168 ---PDAIEQALNGWRYQ-----HHIQPITLWFDDALSAMRSLKGIGATHL 209 (251)
T ss_pred ---HHHHHHHHHhCCce-----eeeeEEEEECCCHHHHHHHHHHhCCCCC
Confidence 01112234444542 2567788999999999999998877653
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=3.6e-15 Score=152.43 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=92.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~ 331 (666)
.+-+.+.+.+.. .++.+|||||||||.++..+++. +|+++|+|+.|+..++.+.. +.+.. ..+...++++
T Consensus 38 ~Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~-~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK-KKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh-ccCccceEEEEechhh
Confidence 344555555442 25689999999999999988875 89999999999988875433 33322 4556778999
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|||+|++||+|.++..+.+. +|.+.+|+|++|||||||.+++...
T Consensus 113 LPf~D~sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 99999999999998885555 8999999999999999999988865
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.56 E-value=1e-14 Score=149.52 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.++.+|||+|||||.++..++++ +|+++|+|+.|+..++.+..........+...|++++|+++++||+|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 34579999999999999888753 7999999999999887655443223445667789999999999999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+. +|...+|+|++|+|||||.+++.++
T Consensus 126 lrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 6666 8899999999999999999998865
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=8.9e-15 Score=126.15 Aligned_cols=92 Identities=25% Similarity=0.486 Sum_probs=71.9
Q ss_pred EEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccCh
Q 005981 279 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD 355 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~ 355 (666)
||+|||+|.++..|+++ +|+++|+++.++..++... ...+ ..+...+.+.+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~--~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEG--VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTST--EEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccC--chheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999988876 8999999998776554322 1112 225666789999999999999999887777 888
Q ss_pred HHHHHHHHHhccCCeEEEE
Q 005981 356 GILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 356 ~~~L~el~RvLkPGG~lv~ 374 (666)
..+++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 8
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.50 E-value=1.3e-12 Score=148.17 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=75.9
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCCCC-CccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~yp-~tyDliha~ 589 (666)
-..+||+|||.|.|.+.++...=+ .|++.++- ...+..+.++|+ +-++.+-.+. ...+| ++.|-||..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~---~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD---ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 466999999999999999988322 25666553 344566667777 2222221111 12245 889999865
Q ss_pred ccccc-------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhc-CcEE
Q 005981 590 GLFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHV 641 (666)
Q Consensus 590 ~~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l-~W~~ 641 (666)
|.. .+.|=--+..|.++.|+|+|||.+.++ |..+..+.+.+.+..- +|+.
T Consensus 425 --FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 425 --FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred --CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 553 222322259999999999999999885 7777766655554443 3554
No 9
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.48 E-value=3.6e-14 Score=141.07 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=138.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
+..++++.+-++. +....++|||||.|.+.++|... +++-+|.|..|+..++ -+...++.....+.|.+.|+|
T Consensus 58 ig~rlaDrvfD~k--k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf 133 (325)
T KOG2940|consen 58 IGDRLADRVFDCK--KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDF 133 (325)
T ss_pred HHHHHHHHHHHHh--hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccc
Confidence 3444555544432 34568999999999999999887 7899999999886553 333445555566678899999
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH--HHHHHhhhhhhhhhhhhcCceE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW--KEMLDLTTRLCWELVKKEGYIA 412 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w--~~~~~l~~~l~W~~v~~~g~~~ 412 (666)
.+++||+|+++.. .||.+++...+.++...|||+|.|+-+.+ +..++.|++-.. .+++. .|.+.
T Consensus 134 ~ens~DLiisSls-lHW~NdLPg~m~~ck~~lKPDg~Fiasml-ggdTLyELR~slqLAelER------------~GGiS 199 (325)
T KOG2940|consen 134 KENSVDLIISSLS-LHWTNDLPGSMIQCKLALKPDGLFIASML-GGDTLYELRCSLQLAELER------------EGGIS 199 (325)
T ss_pred cccchhhhhhhhh-hhhhccCchHHHHHHHhcCCCccchhHHh-ccccHHHHHHHhhHHHHHh------------ccCCC
Confidence 9999999997654 99999999999999999999999988854 778888887643 22222 22222
Q ss_pred EeecCCc---hhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCC
Q 005981 413 IWKKPTN---NSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463 (666)
Q Consensus 413 i~~kpl~---~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~ 463 (666)
..-.|+. +.-.++.+|||..+.. +.+...+.|+.+.+++.+|+.+|..+
T Consensus 200 phiSPf~qvrDiG~LL~rAGF~m~tv--DtDEi~v~Yp~mfeLm~dLq~MgEsn 251 (325)
T KOG2940|consen 200 PHISPFTQVRDIGNLLTRAGFSMLTV--DTDEIVVGYPRMFELMEDLQGMGESN 251 (325)
T ss_pred CCcChhhhhhhhhhHHhhcCccccee--cccceeecCchHHHHHHHHHhhcccc
Confidence 2222222 2344889999987655 77888999999999999999877655
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=3.9e-13 Score=140.09 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHH--HcCC-CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFAL--ERGA-PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~--~rg~-~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..+++. +|+|+|+|+.|+..++.+... .... ...+...+++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999988877642 799999999999887644321 1122 2345566788999999999999998
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++ +++..+++|+.|+|||||.+++.+.
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 886666 7899999999999999999999875
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=4.4e-13 Score=139.84 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
.|.....+.+++.+.. .+..+|||||||+|..+..++.. +|+++|+++.++..++..... .....+...|+
T Consensus 35 ~gg~~~~~~~l~~l~l----~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~ 108 (263)
T PTZ00098 35 SGGIEATTKILSDIEL----NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDI 108 (263)
T ss_pred CCchHHHHHHHHhCCC----CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCc
Confidence 3433445666666642 34578999999999988888653 899999999988766543322 11233445567
Q ss_pred cCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...++++++||+|++..+++|+. .+...+|++++++|||||.|+++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77888889999999988878874 2678999999999999999999864
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=7.1e-13 Score=143.27 Aligned_cols=120 Identities=17% Similarity=0.286 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcccc-cCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 256 DQYLDQIAKMVPDI-TWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i-~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
..+++.+++.+..- .....+.+|||||||+|.++..|++. +|+|+|+++.++..++. .+.+.+.. ..+...|.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCc
Confidence 34555666555310 01134578999999999999888764 89999999999887764 44444542 34556678
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..+|+++++||+|+|..+++|+ .+...+++++.|+|||||.|++++.
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8899999999999999888887 7888999999999999999999864
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.43 E-value=1.5e-13 Score=138.86 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.+.+|||||||.|.++..|+.. +|+|+|+++.+++.|+ ..|.+.++...+....++++....++||+|+|..+++|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4479999999999999999876 9999999999998887 466677766545555567776666899999999999999
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++.+++.+.+++||||.++++|.
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 8999999999999999999999985
No 14
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.42 E-value=1.5e-12 Score=131.71 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=116.8
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+.+.+.... .....+|||+|||+|.++..+++. +++++|+++.++..++.... ....+...+.+.++
T Consensus 19 ~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~ 93 (240)
T TIGR02072 19 MAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP 93 (240)
T ss_pred HHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC
Confidence 3444545444321 123468999999999998888764 68999999987755543221 12234555678888
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhcCceEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~~~g~~~i 413 (666)
+++++||+|+++.+ +|+..++..++.++.++|+|||.++++++ ......++...+.. ....+.
T Consensus 94 ~~~~~fD~vi~~~~-l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~-----~~~~~~---------- 156 (240)
T TIGR02072 94 LEDSSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQ-----HGLRYL---------- 156 (240)
T ss_pred CCCCceeEEEEhhh-hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHH-----hccCCC----------
Confidence 88899999998877 45558889999999999999999999864 44444444433321 000110
Q ss_pred eecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhhcccCCCCCCC
Q 005981 414 WKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463 (666)
Q Consensus 414 ~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l~~L~~~g~g~ 463 (666)
+.......++++ |....+ ........|.+....++.++.+|.++
T Consensus 157 ---~~~~~~~~l~~~-f~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 157 ---SLDELKALLKNS-FELLTL--EEELITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred ---CHHHHHHHHHHh-cCCcEE--EEEEEEEeCCCHHHHHHHHHHhccCc
Confidence 111233455555 654333 44556778899999999999776544
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=139.76 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=84.9
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHH-cCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~-rg~~~~~~~~d~e~Lpf 334 (666)
.+.+...+.. ..+++|||||||+|.++..++.. .|+|+|+|+.++.++....... ......+...+++.+|+
T Consensus 111 ~~~l~~~l~~----l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSP----LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3445555543 23479999999999999888765 6999999998876543221111 12233455557888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|+|..+++|. .++..+|++++++|+|||.+++.+.
T Consensus 187 -~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 7899999998887776 7889999999999999999999864
No 16
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.39 E-value=3.8e-12 Score=130.55 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCchhHHHhcc------CCeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
+..+|||||||+|.++..+++ .+++|+|+++.|+..++.+..... .....+...++..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 456899999999998877754 279999999999988875443321 12234555677777765 589999888
Q ss_pred ccccccc-ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++.. +...+++++.|+|+|||.++++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7666532 346899999999999999999964
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=1.7e-12 Score=134.14 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCchhHHHhcc------CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
...+|||||||+|.++..++. .+|+|+|+|+.|+..++.+... .+. ...+...++..++++ .+|+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 457899999999998876654 2899999999999888765544 232 234455566777664 58999988
Q ss_pred ccccccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++.++ ...++++++++|||||.|++++.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 776666322 34899999999999999999864
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=2.8e-12 Score=132.84 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=80.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
...+++.+.. ....+|||||||+|.++..|+.+ +|+|+|+|+.|+..++ ++++ .+...|++.++
T Consensus 18 ~~~ll~~l~~----~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~~--~~~~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVGA----ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERGV--DARTGDVRDWK- 85 (255)
T ss_pred HHHHHHhCCC----CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcCC--cEEEcChhhCC-
Confidence 4455555542 34579999999999999888754 8999999998886553 3333 24445666664
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++||+|+|+.++ ||.+++..+++++.++|||||.+++..
T Consensus 86 ~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 PKPDTDVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCCceEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 56799999998775 555888999999999999999999984
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=2.5e-12 Score=133.04 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=80.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
....+++.+.. .+..+|||||||+|.++..+++. +|+|+|+++.++..++. +.....+...|+..+.
T Consensus 19 ~~~~ll~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~-----~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVPL----ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS-----RLPDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCCC----cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-----hCCCCeEEECchhccC
Confidence 34455555542 34579999999999999888753 79999999988865543 2222334445555554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++||+|+|+.+ +||..+...+++++.++|||||.+++..
T Consensus 90 -~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4569999998877 5566888999999999999999999974
No 20
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=5.1e-12 Score=124.41 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=91.5
Q ss_pred CeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCC-CCCCCeeEEEecccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
..||+||||||..-.++... +|+++|.++.|-..+....+..+..... +.+++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 35899999999877777633 8999999999987776655555444333 5566789999 88999999999988766
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHH
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~ 394 (666)
. .++.+.|+++.|+|||||.+++..| +......+...|+.+.
T Consensus 158 v-e~~~k~L~e~~rlLRpgG~iifiEH-va~~y~~~n~i~q~v~ 199 (252)
T KOG4300|consen 158 V-EDPVKQLNEVRRLLRPGGRIIFIEH-VAGEYGFWNRILQQVA 199 (252)
T ss_pred c-CCHHHHHHHHHHhcCCCcEEEEEec-ccccchHHHHHHHHHh
Confidence 6 8999999999999999999999987 4555455555554443
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=1.3e-12 Score=139.79 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+.+|||||||+|.++..|+.. +|+|+|+++.++..++.. +...+. ...+...+++.+++.+++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3468999999999999888765 899999999999877643 322222 23445556788888888999999999988
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+ .++..+++++.++|||||.+++++.
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 87 7899999999999999999999974
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=9.9e-12 Score=126.35 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~L 332 (666)
.+.+++.+.. .+..+|||+|||+|.++..+++. +|+|+|+++.++..++...+ ..+.. ..+...+.+.+
T Consensus 34 ~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 34 RKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcC
Confidence 3455555541 34579999999999998877642 89999999999877765443 33333 23455567778
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|++..++ ++.++...+++++.++|+|||.+++.+.
T Consensus 109 ~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8888999999988764 4448888999999999999999998864
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.35 E-value=8.8e-12 Score=126.34 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC----------CeEEEeCCcchHHHHHHHHHHHcCCCc----eEEeecccCCCCCCCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAPA----MVAAFATRRLPYPSQA 338 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiS~~~l~~a~~~~a~~rg~~~----~~~~~d~e~Lpf~d~s 338 (666)
....++||++||||..+..+.+. +|+.+|+++.|++.+. +.+.++++.. .+...|++.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45589999999999887777543 7999999999998876 4555565432 4555589999999999
Q ss_pred eeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCC
Q 005981 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
||+.+.+..+-.| .++++.|+|++|||||||.|.+-.++-
T Consensus 178 ~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred ceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999988886666 899999999999999999999887643
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.35 E-value=1.8e-12 Score=122.96 Aligned_cols=95 Identities=31% Similarity=0.573 Sum_probs=75.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
....+|||||||+|.++..+.+. +++|+|+++.++.. . .......+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 34579999999999999999877 99999999976644 1 112222223344457799999999988777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
. +++..+|+++.++|||||+++++++.
T Consensus 91 ~-~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 91 L-PDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp S-SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred c-ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 7 68999999999999999999999863
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=4e-12 Score=114.04 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchhHHHhcc--C--CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecc-cCCCCCCCCeeEEEecc-c
Q 005981 275 IRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR-C 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~-e~Lpf~d~sFDlVv~s~-~ 347 (666)
..+|||||||+|.++..+++ . +|+|+|+++.++..++.+...... ....+...|+ ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 46899999999999999887 3 999999999999888765533222 2334455555 22333 35699999988 4
Q ss_pred ccccc--cChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~--~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+.++. ++...+++++.+.|+|||++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34343 345689999999999999999986
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=7.9e-12 Score=124.91 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+|||+|||+|.++..|+++ +|+|+|+|+.++..++.. +...++. ......+...++++ ++||+|+|+.+++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 368999999999999999877 899999999999887754 3444543 23344456666664 679999998886555
Q ss_pred cc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 352 TR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 352 ~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
.. +...+++++.++|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 3569999999999999996554
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.32 E-value=1e-11 Score=126.88 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
..+|||||||||.++..+++. +|+|+|+|+.|+..++. +. .....+++.+|+++++||+|+|+.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-----~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-----AD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-----cc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 468999999999999888765 89999999999876643 21 12345688999999999999998876555
Q ss_pred ccChHHHHHHHHHhccCCe
Q 005981 352 TRDDGILLLEVNRMLRAGG 370 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG 370 (666)
++++.+++|++|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 899999999999999953
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=6e-12 Score=130.45 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCC-CCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lp-f~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.++..|++. +|+++|+++.++..++. .+.+.++. ..+...+++.++ +.+++||+|+|..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4579999999999999999877 89999999999988764 34444542 234444555553 567899999998885
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+ .++..++.++.++|||||++++...
T Consensus 123 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 123 EWV-ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred Hhh-CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 555 8889999999999999999988743
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.32 E-value=9.3e-12 Score=118.73 Aligned_cols=101 Identities=21% Similarity=0.316 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..|++ .+++|+|+++.++..++. .+++.+.. ..+...|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 347899999999999988883 289999999999988874 45555665 455666777777 65 899999988
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++. .+...+++++.++|++||.++++..
T Consensus 81 ~~l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVLHHF-PDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STGGGT-SHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cchhhc-cCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 776444 7888999999999999999999864
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.31 E-value=9.8e-12 Score=124.04 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..+|||+|||+|.++.+|+++ +|+|+|+++.++..++. .+...++.......+....+++ ++||+|+|+.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 368999999999999999876 89999999999987764 4445555543444455555554 6899999988866663
Q ss_pred c-ChHHHHHHHHHhccCCeEEEEE
Q 005981 353 R-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 353 ~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
. +...++++++|+|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 3468999999999999996655
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=1.1e-12 Score=115.70 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=56.9
Q ss_pred EEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC-CC-CCCCeeEEEecccccccc
Q 005981 279 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L-pf-~d~sFDlVv~s~~l~h~~ 352 (666)
||||||+|.++..+.+. +++++|+|+.++..++.+................... .. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999988888754 8999999999996665555443322222222221221 11 22599999999987777
Q ss_pred cChHHHHHHHHHhccCCeEE
Q 005981 353 RDDGILLLEVNRMLRAGGYF 372 (666)
Q Consensus 353 ~d~~~~L~el~RvLkPGG~l 372 (666)
++...+++++.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.27 E-value=2.4e-11 Score=129.74 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=81.7
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHH-HcCCCceEEeecccCCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRLPYP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~-~rg~~~~~~~~d~e~Lpf~ 335 (666)
+.+...+.. ..+++|||||||+|.++..++.. .|+|+|.|+.|+.++...... .......+...+++.++..
T Consensus 111 ~~~l~~l~~----~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSP----LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 344554432 33579999999999988777654 699999999888654221111 1111223444567777754
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+||+|+|+.+++|+ .++..+|++++|+|||||.|++.+.
T Consensus 187 -~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999998887 8899999999999999999999864
No 33
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.27 E-value=2.3e-11 Score=127.42 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-------CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
...+|||+|||+|.++..+++. .++|+|+|+.++..+. ++.....+...+...+|+++++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEec
Confidence 3468999999999988887643 5899999998875543 333334455667888999999999999754
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~ 387 (666)
. ...+.++.|+|||||+|++.++ ...++.+++
T Consensus 160 ~--------~~~~~e~~rvLkpgG~li~~~p-~~~~l~el~ 191 (272)
T PRK11088 160 A--------PCKAEELARVVKPGGIVITVTP-GPRHLFELK 191 (272)
T ss_pred C--------CCCHHHHHhhccCCCEEEEEeC-CCcchHHHH
Confidence 3 2246899999999999999864 555555544
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.27 E-value=6.9e-11 Score=127.35 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..+++. +|+++|+++.|+..++.+.. ..+ ..+...+.+.+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 3468999999999988777542 79999999999877764332 112 2345567788899889999999988877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ .+...+|+++.|+|||||.+++...
T Consensus 190 ~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 66 7888999999999999999988753
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=4.5e-11 Score=134.60 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||||||+|.++..|++. +|+|+|+|+.++..++.+. ........+...|...+++++++||+|+|..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA-IGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh-hcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 4578999999999888877754 8999999999887765432 22222334555677778888889999999888777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .++..++++++|+|||||.+++++.
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 7 7889999999999999999999864
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=7.2e-11 Score=119.10 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e 330 (666)
..+.+.+.+.+.. ....+|||+|||+|.++..++.. +++++|+++.++..++.+ ....+....+...+..
T Consensus 5 ~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccc
Confidence 3455556665542 34579999999999988877642 799999999887666543 1111223344555677
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++++++||+|++..++.|+ .++..+++++.++|||||.+++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 788888999999998887776 7889999999999999999998863
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.23 E-value=4.8e-11 Score=124.68 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+.+|||||||+|..+..++.. +|+++|+++.++..++... ...+... .+...+++.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~-~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA-RKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH-HHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4579999999999766544432 6999999999988876433 3344432 3444578888888889999998766
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ |+..+...+++++.|+|||||.|++++.
T Consensus 156 ~-~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 156 I-NLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-cCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 5557888999999999999999999865
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.23 E-value=9.9e-12 Score=107.03 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=69.7
Q ss_pred eeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 523 LDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
||+|||.|.+++.|+++ +. +|+.+|. +.+++.+.++.. +.+.+.-.+.++.-+++||+|++.++|.+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~-----~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA-----SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC-----EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCC-----EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--
Confidence 79999999999999999 76 5555653 567888877655 225555556664434999999999999988
Q ss_pred CCCHHHHHHHhhhcccCCeEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
.+...++.|+.|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3558999999999999999987
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.20 E-value=1.2e-11 Score=109.80 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=70.1
Q ss_pred EEEECCCCchhHHHhcc-------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc-cc
Q 005981 278 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 349 (666)
Q Consensus 278 VLDIGCGtG~~a~~L~~-------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~-l~ 349 (666)
|||+|||+|..+..+.+ .+++++|+++.++..++.+.. +.+....+...|..++++.+++||+|+|+.. +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988877763 389999999999988775443 3556667777788888888899999999655 55
Q ss_pred cccc-ChHHHHHHHHHhccCCe
Q 005981 350 NWTR-DDGILLLEVNRMLRAGG 370 (666)
Q Consensus 350 h~~~-d~~~~L~el~RvLkPGG 370 (666)
|+.+ +...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 6532 23589999999999998
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=9e-11 Score=122.51 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=97.3
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~ 320 (666)
|+.+...+.......++.+++.+.- .++.+|||||||.|.++.+++++ +|+|+++|+++...++. .++++|+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~-r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK-RIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH-HHHHcCC
Confidence 4444445555555677777777752 46699999999999999999877 89999999998877764 4555676
Q ss_pred CceEEeecccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEECCCCC
Q 005981 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYK 381 (666)
Q Consensus 321 ~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~P~~~ 381 (666)
...+... ..+.....+.||-|++..++.|+.. +...+++.++++|+|||.+++-+.....
T Consensus 121 ~~~v~v~-l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 121 EDNVEVR-LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CcccEEE-eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 6322221 2333333455999999999999853 3679999999999999999998754433
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.20 E-value=6.6e-11 Score=124.21 Aligned_cols=126 Identities=20% Similarity=0.324 Sum_probs=87.0
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~ 320 (666)
|+.+...+.......++.+.+.+. + +++.+|||||||.|.++.+++++ +|+|+++|+.....++ +.+.+.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~-l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLG-L---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhC-C---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCC
Confidence 344444555555667777777775 2 45689999999999999999987 8999999987766655 34555676
Q ss_pred Cc--eEEeecccCCCCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 321 PA--MVAAFATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 321 ~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+...|..+++ .+||.|++..++.|.. .+...+++++.++|||||.+++.+.
T Consensus 111 ~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 53 33344555544 3899999999999985 3457999999999999999998753
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=7.9e-11 Score=124.40 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=76.5
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+|||+|||+|.++.+|++. +|+|+|+|+.++..++ +.+...++...+...|....++ +++||+|+++.++++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 58999999999999999876 8999999999988776 4555566654444445555544 578999999887666532
Q ss_pred -ChHHHHHHHHHhccCCeEEEEE
Q 005981 354 -DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 354 -d~~~~L~el~RvLkPGG~lv~s 375 (666)
+...+++++.++|+|||++++.
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 3458999999999999997665
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.17 E-value=3.3e-10 Score=112.57 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=74.8
Q ss_pred CCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+.+|||+|||+|.++..++. .+|+++|.++.++..++. .+++.++. ..+...+.+.++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 57899999999988877753 289999999999988874 44445554 3444556666666 679999997542
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+++++.++|||||.+++...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 5668899999999999999999853
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=2.2e-10 Score=113.95 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
..++||+|||.|..+.+|+++ .|+++|.|+..+...+ +.|.+.++.......|++...++ +.||+|++..++++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 468999999999999999988 9999999998887764 67778888876666777777765 6899999877766664
Q ss_pred cCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 353 RDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 353 ~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
.+. ..++..+...++|||++++.+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 443 478999999999999998864
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.13 E-value=2.8e-10 Score=114.61 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...+|||||||+|.++..|.+. +++|+|+|+.++..++... ....+...++.. ++++++||+|+|+.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 3468999999999988877643 7999999999886664321 122334445555 78889999999999988
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
|+.++ ...+++++.|++ ++++++...
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 88533 458999999998 567777753
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.13 E-value=1.8e-10 Score=116.50 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=76.3
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+|||||||+|.++..+++. +|+|+|+++.++..++... ...+... .+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999988887653 7999999998887776443 3344432 3344455555654 58999999888777
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ .+...+++++.++|||||++++.+.
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 7 7788999999999999999999864
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.12 E-value=5.3e-11 Score=121.45 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-Cc----e--EEeecccCCCCCCCCeeEEEec
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PA----M--VAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~----~--~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+++|||+|||+|.++..|+.. +|+|+|+++.|+..|+.. +...-. .. . +...+.+.+ .+.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 478999999999999999876 999999999999887654 221111 10 1 112223333 2459999999
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+++|. .|+..++..+.+.|||||.+++++.
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeeeh
Confidence 999999 8999999999999999999999974
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.12 E-value=3.3e-10 Score=113.73 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecc-cCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~-e~Lp--f~d~sFDlVv~s 345 (666)
+..+|||+|||+|.++..+++. +|+|+|+++.++..++.+.. ..+.. ..+...++ +.++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3478999999999988887653 79999999999988775443 33433 34455566 6666 777899999976
Q ss_pred cccccccc--------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~--------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. .+|.. ....+++++.++|||||.|++++.
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 34422 135789999999999999999863
No 49
>PRK06922 hypothetical protein; Provisional
Probab=99.11 E-value=1.9e-10 Score=131.39 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEecccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
+.+|||||||+|.++..++.. +|+|+|+|+.|+..++.+. ...+....+...|...++ +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999988777643 8999999999998876543 233333344445666777 788999999988877
Q ss_pred cccc------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 INWT------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 ~h~~------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++|. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 6653 2346899999999999999999863
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.09 E-value=6.8e-10 Score=117.46 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...++...+........+..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 3479999999999888777654 7999999999998877544 344443322221111233446799999986442
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++.++.++|||||++++++.
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2235789999999999999999964
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=2.3e-10 Score=113.63 Aligned_cols=132 Identities=21% Similarity=0.262 Sum_probs=98.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..+++..++. ...++|.|+|||+|..+..|.++ .|+|+|-|+.|+++| +.+.....+...|+..+.
T Consensus 19 a~dLla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-----a~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-----AQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-----HHhCCCCceecccHhhcC-
Confidence 3456666663 45678999999999999999877 899999999988654 456666667666776665
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhhh
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK 406 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v~ 406 (666)
++..+|+++++ ..+||.+|-..+|..+...|.|||.+.+..+ .+... .....|.+.++...|...-
T Consensus 89 p~~~~dllfaN-AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP-dN~de----psH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 89 PEQPTDLLFAN-AVLQWLPDHPELLPRLVSQLAPGGVLAVQMP-DNLDE----PSHRLMRETADEAPFAQEL 154 (257)
T ss_pred CCCccchhhhh-hhhhhccccHHHHHHHHHhhCCCceEEEECC-CccCc----hhHHHHHHHHhcCchhhhh
Confidence 45789999955 5599999999999999999999999999853 33321 2233455666666675543
No 52
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.09 E-value=8.5e-10 Score=118.03 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=102.4
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc-----CCCceEEe
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-----GAPAMVAA 326 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r-----g~~~~~~~ 326 (666)
+....++.+.+.+.... +.++.+|||||||+|.++..|++. +|+|+|+|+.|+..++.+..... .....+..
T Consensus 125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 33445555665554210 123579999999999999999876 89999999999988875443220 11223333
Q ss_pred ecccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHHhhhhhhhhhh
Q 005981 327 FATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (666)
Q Consensus 327 ~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~~~l~~~l~W~~v 405 (666)
.|.+.+ +++||+|+|..+++|+..+. ..+++.+.+ +.+||. +++..|.... . ..+..+... |.
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~-~---~~l~~~g~~-----~~-- 267 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLY-Y---DILKRIGEL-----FP-- 267 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchH-H---HHHHHHHhh-----cC--
Confidence 444333 57899999999988884433 245666664 455555 4554332111 1 111111110 11
Q ss_pred hhcCceEEeecCCchhhhHHhhcCCCCCcCCCCCCcceeeeecchhhh
Q 005981 406 KKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACI 453 (666)
Q Consensus 406 ~~~g~~~i~~kpl~~~c~~lr~aGf~~p~c~~~~~~~~~wY~~l~~~l 453 (666)
........|..+..+...+++++||.+..+ .......||.-+.+|.
T Consensus 268 g~~~~~r~y~~s~eel~~lL~~AGf~v~~~--~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 268 GPSKATRAYLHAEADVERALKKAGWKVARR--EMTATQFYFSRLLEAV 313 (315)
T ss_pred CCCcCceeeeCCHHHHHHHHHHCCCEEEEE--EEeecceeHHhhhhhc
Confidence 000111123334445667889999976544 3344555666666654
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.08 E-value=1.3e-09 Score=98.95 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
...+|||+|||+|.++..++++ +|+++|+++.+++.++.... ..+... .+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 3468999999999999888764 79999999998887765443 333332 333333332 3333468999997654
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.. ....+++++.++|+|||.|++..
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22 23589999999999999999874
No 54
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=1e-09 Score=106.43 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=92.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e 330 (666)
.+++.+.+.+....-+....+|||+|||+|.+...|++. ..+|+|.|+..+.-|+ +.|+.++..+ .+.+.|+.
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeecc
Confidence 455555555542111233458999999999999999976 5999999999887765 6777777764 56666655
Q ss_pred CCCCCCCCeeEEEeccccc--ccccC-----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 331 RLPYPSQAFDLIHCSRCRI--NWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~--h~~~d-----~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
.-.+..+.||+|+--..+- .+.++ +..++..+.++|+|||.|+|++ ++++..|+.+.+
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 5456678899998433221 12122 2367888999999999999986 788888776643
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=4e-10 Score=111.48 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+++||+|||.|.++..|+.+ +++++|+++..+..++.+.+.. ....+...++... .+.+.||+|+++.+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 45679999999999999999998 9999999998886665443321 1223444443332 46799999999998777
Q ss_pred ccc--ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~--d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +...++..+.+.|+|||.+++.+.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 643 345789999999999999999863
No 56
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.04 E-value=1.1e-09 Score=114.81 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=84.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc-CCCc--eEEeecccCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GAPA--MVAAFATRRL 332 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r-g~~~--~~~~~d~e~L 332 (666)
-+++...++.+ .+++|||||||+|.++-+++.+ .|+|+|.+.....+. +++++- +... ......++.+
T Consensus 104 W~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF--~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 104 WDRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF--EAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred HHHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH--HHHHHHhCCCccEEEcCcchhhc
Confidence 34556666542 4589999999999999888876 799999887654332 233222 2222 2332457888
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
|. .++||+|+|..++.|. .++-..|.+++..|++||.+++-|.-
T Consensus 178 p~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred cc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 87 7899999999999998 88999999999999999999998763
No 57
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.04 E-value=8.7e-10 Score=111.77 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=74.9
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH------------HcCCCceEEeecccCCCCC-CCCe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQAF 339 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~------------~rg~~~~~~~~d~e~Lpf~-d~sF 339 (666)
..+|||+|||.|..+.+|+++ +|+|+|+|+..+..++.+... .++....+.+.|+..++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 469999999999999999988 999999999988754321100 0112233445566565532 3579
Q ss_pred eEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 340 DLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 340 DlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
|.|+...+++|+.++. ..+++.+.++|||||.+++.++
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999888888885444 3789999999999998666643
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=8.3e-10 Score=121.27 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
...++.+.+.+.. .++.+|||||||+|.++..+++. +|+|+|+|+.++..++.+. .+....+...+...+
T Consensus 153 ~~k~~~l~~~l~l----~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l 225 (383)
T PRK11705 153 EAKLDLICRKLQL----KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc
Confidence 3445555555541 34579999999999999888764 8999999998887665433 133333333344433
Q ss_pred CCCCCCeeEEEecccccccc-cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++||+|++..+++|.. .+...+++++.++|||||++++.+.
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 47899999988877763 2346899999999999999999864
No 59
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.04 E-value=2.2e-09 Score=107.61 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
+.+.+.+.+.. .+..+|||+|||+|.++..++.. +++++|+++.++..++.+.. ......+...++.++
T Consensus 27 ~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 27 WRRRAVKLIGV----FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHHHHhcc----CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 34445554432 24579999999999988877653 79999999987766554332 111233445566777
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++++||+|+++..+++. .+...+++++.++|+|||.+++.+.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNV-TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCCcEEEEEEeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7777899999988775555 7888999999999999999998764
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.02 E-value=2.3e-09 Score=105.96 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=70.9
Q ss_pred CCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
+.+|||+|||+|.++..++. .+|+++|.++.++..++. .+++.+.. ..+...++++++ .+++||+|+|..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 47899999999988877653 279999999998876654 34445553 344555666664 357999999754
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+ .+...+++.+.++|+|||.+++..
T Consensus 118 -~-~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -L-ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -h-hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 345678899999999999999874
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.01 E-value=1.1e-09 Score=109.15 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=74.4
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC---CCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp---f~d~sFDlVv~s~ 346 (666)
..+|||||||+|.++..++.+ +|+|+|+++.++..++.+. ...++.+ .+...++..++ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 368999999999999888765 8999999999988776544 3444433 34444554443 4567999999664
Q ss_pred cccccccCh--------HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~--------~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+|.... ..+++++.|+|||||.|++.+.
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 3 5553321 4789999999999999999863
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.01 E-value=6e-10 Score=116.50 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCch----hHHHhcc---------CCeEEEeCCcchHHHHHHHHH---HHcCC-----------------
Q 005981 274 HIRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 320 (666)
Q Consensus 274 ~~~~VLDIGCGtG~----~a~~L~~---------~~V~gvDiS~~~l~~a~~~~a---~~rg~----------------- 320 (666)
...+|||+|||+|. ++..|.+ .+|+|+|+|+.++..|+...- ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 4444432 279999999999987764210 00111
Q ss_pred -------CceEEeecccCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEE
Q 005981 321 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 321 -------~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st 376 (666)
...+...++...+++.++||+|+|.++++++.. +...++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 123444566666667789999999999888742 23489999999999999999973
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.01 E-value=1.9e-09 Score=108.99 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--------CCCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--------f~d~sFD 340 (666)
++.+|||||||+|.++..+++. .|+|+|+++ +. .. .+ ..+...|+...+ +.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~---~~--v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI---VG--VDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC---CC--cEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 4578999999999998888654 799999987 21 10 12 234445555532 5678999
Q ss_pred EEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+|+.+ .++..+. ..+|.++.++|||||.|++..+
T Consensus 120 ~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 120 VVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9997654 4443322 3588999999999999999754
No 64
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.00 E-value=3.1e-10 Score=119.10 Aligned_cols=114 Identities=19% Similarity=0.336 Sum_probs=73.6
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCcc
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~ty 583 (666)
++.+.+.++++.|. .|||+|||.|+++.+++++ |+.|..+.+.+.......+.+.++||-....--|..+..++.+|
T Consensus 51 ~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 44566677788885 5999999999999999999 88444444333222222234557787333322233344556799
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|-|.+-++|.|.+. -+.+.++.+++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999874 36789999999999999999985
No 65
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.00 E-value=1.2e-09 Score=106.59 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... ..++++||+|+|+-- .
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 368999999999999988875 599999999988777644 4445555 3333333221 234689999998865 3
Q ss_pred ccccC-----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRD-----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d-----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...+ ...++.+..+.|+|||.+++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33222 34789999999999999977643
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.00 E-value=1.2e-09 Score=118.24 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=73.8
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.+|||+|||+|.++..++++ +|+++|+++.++..++.... ..++...+...|... ...+.||+|+|+..+|+.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 47999999999999888764 79999999999988875444 445554444333322 235789999998765543
Q ss_pred c----cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 352 T----RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 352 ~----~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .....+++++.++|||||.+++...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 1235889999999999999999863
No 67
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.00 E-value=3.2e-09 Score=107.53 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+..+|||+|||+|.++..++. .+++++|+++.++..++.+..... .....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 347899999999998877753 389999999988877765443211 11233444566677777789999998887
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++++ .+...++.++.++|+|||.+++.+.
T Consensus 131 l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 6655 7888999999999999999988764
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-09 Score=114.20 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCC-CCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d-~sFDlVv~s~~l~ 349 (666)
++++|||+|||+|.++...++. .|+|+|++|..+..++ +.++.+++...........+.... +.||+|+|+-..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-
Confidence 5689999999999887766654 7999999999887776 466666766322111112222333 699999987431
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-...+..++.+.|||||++++|+.
T Consensus 240 ---~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 ---EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEee
Confidence 1235888899999999999999974
No 69
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.98 E-value=2.1e-09 Score=108.77 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=82.6
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~ 329 (666)
+.....+.+.+.+.. ......+|||+|||+|.++..++.. +|+|+|+++.++..++.+... .+. ...+...++
T Consensus 37 ~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCh
Confidence 333445556655542 0134579999999999999999866 899999999999887755433 332 234444555
Q ss_pred cCCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.++ ++||+|++..+++|+.. +...++.++.+++++++++.+.
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5554 78999999888778742 3568899999999988777654
No 70
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.98 E-value=9.7e-10 Score=108.46 Aligned_cols=105 Identities=26% Similarity=0.381 Sum_probs=78.0
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-CC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YP 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-f~ 335 (666)
+.|++.++ ++.+|||+|||.|.+..+|.+. ...|+|+++..+ ..+.++|++......+ +.|. |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-----~~cv~rGv~Viq~Dld-~gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-----AACVARGVSVIQGDLD-EGLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-----HHHHHcCCCEEECCHH-HhHhhCC
Confidence 44556664 3489999999999999999875 788999887644 4566788874433332 4554 89
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECCCCC
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYK 381 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~ 381 (666)
+++||.|+++.++.+. .++..+|.|+.|+ |...+++ +|.+.
T Consensus 73 d~sFD~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVs-FPNFg 113 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVS-FPNFG 113 (193)
T ss_pred CCCccEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEE-ecChH
Confidence 9999999999986666 7899999999777 5566665 55443
No 71
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.97 E-value=1.4e-09 Score=111.60 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||++||+|-+|..+++.- . .-.|+.+| +++||.++.+|-. |...+...|.+|.-++|||++-++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~-g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSV-G--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHhc-C--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 359999999999999999882 1 34677788 5899999999855 445688889999434999999999655
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
-+.. +++.+|.||.|||||||.+++-|-
T Consensus 130 rnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 RNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 5544 668999999999999999998643
No 72
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.97 E-value=6.6e-10 Score=116.06 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=86.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhccc---CC---------------CceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC
Q 005981 492 ELFKAESKYWNEIIESYVRALHW---KK---------------MKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS 552 (666)
Q Consensus 492 ~~f~~d~~~w~~~v~~Y~~~l~~---~~---------------~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~ 552 (666)
..|.+.++|-..++..|..++|. .. ..-..|||+|||+|+.+.+|++. ++ .|+.+|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-----~v~giD 82 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-----HVHGVD 82 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-----EEEEEE
Confidence 55666666666667777666651 11 12246999999999999999765 54 455565
Q ss_pred -CCCChhHHHhccc----cccccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 553 -GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 553 -~~~~l~~~~erGl----ig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+++++..+.+|.- +.+.+.-++.. .|| .+||+|++..++.|... .+...+|.|+.|+|||||+++|.|.
T Consensus 83 ~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 83 ICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3577777776532 43333333322 255 89999999887777541 2457999999999999999999864
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=3.9e-09 Score=106.63 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCCCC-CCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lpf~-d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..+++. .++++|+++.++..++.+... .+. ...+...+...++.. .++||+|+++.++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 568999999999998887654 899999999888777654433 333 233444455555543 378999999887666
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .++..++.++.++|++||.+++++.
T Consensus 125 ~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 V-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred C-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5 7889999999999999999998864
No 74
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.96 E-value=2.4e-09 Score=113.38 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
++.+|||+|||+|.++...+.. +|+|+|+++..+..++ +.+..+++...+....... ...+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~-~- 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVSLSED--LVEGKFDLVVANIL-A- 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES--H-
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEEEecc--cccccCCEEEECCC-H-
Confidence 4579999999999776554443 8999999998887776 4566677666443322222 33489999997643 1
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+-+..++..+.++|+|||++++|+.
T Consensus 236 --~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 236 --DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp --HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 2235778889999999999999975
No 75
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.96 E-value=6.9e-09 Score=101.82 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..+....+...|..... .++||+|+++...++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 67999999999999988876 69999999999887765544 33444334444443332 468999999877655522
Q ss_pred C--------------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 D--------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d--------------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ...++.++.|+|+|||.+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 1 24679999999999999999864
No 76
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.96 E-value=1.7e-10 Score=115.37 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc-CCC-CCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e-~Lp-f~d~sFDlVv~s~~l 348 (666)
+..+++||+|||||..+..|... +++|+|+|.+|+ +.|.++++-..+.+.+.. -++ ..+..||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl-----~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML-----AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHH-----HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34789999999999999999887 899999998877 455667654433333322 122 346789999988885
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..+ .+++.++.-+...|+|||.|.||.
T Consensus 199 ~Yl-G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYL-GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hhh-cchhhHHHHHHHhcCCCceEEEEe
Confidence 444 889999999999999999999995
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.96 E-value=4.1e-09 Score=106.79 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~ 331 (666)
....+.+.+.+.... ..+..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. ...+...+
T Consensus 46 ~~~~~~~~~~l~~~~-~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d--- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADG-DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD--- 120 (230)
T ss_pred HHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---
Confidence 344555555554310 124478999999999999988765 899999999999888755443 333 22233333
Q ss_pred CCCCCCCeeEEEeccccccccc-ChHHHHHHHHHhccCCeEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv 373 (666)
++..+++||+|++..+++|+.. +...+++++.+.+++++.+.
T Consensus 121 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4445688999999988888742 23478888888776554443
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.96 E-value=5.7e-09 Score=108.17 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...+|||+|||+|.++..++.. +|+|+|+++.++..++.+. ...++...+. ++..+.+||+|+|+...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCcH--
Confidence 4579999999999888777654 5999999999998776543 3444422111 11122379999976431
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.....++.++.++|||||++++++.
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2235788999999999999999964
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=98.96 E-value=1e-08 Score=104.26 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+....+...|... .+++++||+|+++.....
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 3468999999999998877653 8999999999887776433 3344443344444433 245679999998743221
Q ss_pred ccc--------------------ChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTR--------------------DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~--------------------d~~~~L~el~RvLkPGG~lv~st 376 (666)
-.. ....++.++.++||+||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111 02357888999999999999864
No 80
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.96 E-value=1e-08 Score=102.00 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhcc-cCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHH----hccc--cccc
Q 005981 500 YWNEIIESYVRALH-WKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIY----DRGL--IGVM 569 (666)
Q Consensus 500 ~w~~~v~~Y~~~l~-~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~----erGl--ig~~ 569 (666)
.|++++-.-..... +..+ ..|||+|||+|.++.+|+.. ++ .|+.+|. +.+++.+. +.|+ +.+.
T Consensus 28 ~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~-----~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPEL-----KVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCC-----eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 67766632221111 2222 45999999999999988753 33 6777774 56665444 3455 6667
Q ss_pred cccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEE--ecc
Q 005981 570 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR--ETA 647 (666)
Q Consensus 570 ~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~--~~~ 647 (666)
+...+.+.. ..+||+|.|.. ..++++++.++.|+|||||++++-+.......+.++++.+.|++... -+-
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred eccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEec
Confidence 777666654 67999999874 23568999999999999999999998889999999999999996543 222
Q ss_pred CCCCCceEEEEEEeC
Q 005981 648 EGPHASYRILTADKR 662 (666)
Q Consensus 648 ~~~~~~e~~l~~~k~ 662 (666)
+|-.++..+.|.+|+
T Consensus 173 ~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 173 PGLDGERHLVIIRKK 187 (187)
T ss_pred CCCCCcEEEEEEecC
Confidence 333445566677764
No 81
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=1.5e-09 Score=110.97 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchhHHHhcc--------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
+..+|||||||+|.++..|++ .+|+|+|+++.|+..++.+.. ..++ .+...+.+.+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-~~~~--~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-RPGV--TFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-cCCC--eEEEEecccccccCCCccEEEEC
Confidence 457899999999998877753 279999999999877654321 2222 23333456677777899999999
Q ss_pred ccccccccCh--HHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~~d~--~~~L~el~RvLkPGG~lv~st 376 (666)
.+++|+ ++. ..+|+++.|+++ |.+++..
T Consensus 137 ~~lhh~-~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHL-DDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecC-ChHHHHHHHHHHHHhcC--eeEEEec
Confidence 987777 443 479999999998 5555554
No 82
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.95 E-value=4.7e-09 Score=106.95 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-CCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
+..+|||||||+|.++..+.+. +++++|+++.++..++..... .+....+...+...++ ..++.||+|+++.++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE-SGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHH-cCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 4578999999999998888765 899999999888766644332 3333333344444443 34578999999888676
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+...+|+++.++|+|||.++++..
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 6 7888999999999999999999864
No 83
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.94 E-value=1.5e-08 Score=100.14 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.++..++.+ +|+++|+++.++..++.+.. ..++.. .+...+.. .++ .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 4578999999999998877653 89999999998887764443 334332 23333332 233 3689999976542
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....++.++.++|+|||++++..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 234678999999999999998874
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=7.1e-09 Score=104.28 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~ 329 (666)
.....+.+.+.. .+..+|||||||+|..+..+++ .+|+++|+++.++..++.+.. ..+.. ..+...|.
T Consensus 59 ~~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 59 HMVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDG 133 (205)
T ss_pred HHHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCc
Confidence 345555565541 3457899999999998877654 279999999998877764443 44443 23444454
Q ss_pred cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.......++||+|++.....++ ..++.++|+|||.+++..
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4433345789999987664443 257889999999998863
No 85
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=6.6e-09 Score=103.61 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=84.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+.++.++++. +.+....-|||||||+|..+..|.+. ..+|+|+|+.|++.|+.+.. + ........ -+.+||
T Consensus 35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~-e--gdlil~DM-G~Glpf 108 (270)
T KOG1541|consen 35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL-E--GDLILCDM-GEGLPF 108 (270)
T ss_pred HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh-h--cCeeeeec-CCCCCC
Confidence 34555556554 23345678999999999999988876 78999999999988864221 1 12233333 489999
Q ss_pred CCCCeeEEEeccccccccc-------ChH----HHHHHHHHhccCCeEEEEEECC
Q 005981 335 PSQAFDLIHCSRCRINWTR-------DDG----ILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~-------d~~----~~L~el~RvLkPGG~lv~st~P 378 (666)
..++||.|++..+ ++|.- ++. .++..++.+|++|+..++.-.|
T Consensus 109 rpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 109 RPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 9999999997655 68852 222 5677899999999999998543
No 86
>PLN02244 tocopherol O-methyltransferase
Probab=98.92 E-value=2.7e-09 Score=115.55 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=69.7
Q ss_pred eeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHH----hccc---cccccccCCCCCCCCCccceEEec
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIY----DRGL---IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~----erGl---ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
-..|||+|||.|+++.+|+++ |+ +|+.+| ++.+++.+. ++|+ +.+.....+.++.-+.+||+|+|.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~-----~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA-----NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence 356999999999999999987 66 445555 245555443 3465 344444444443223899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+.|..++ ..+|.||.|+|||||.++|.+
T Consensus 194 ~~~~h~~d~---~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDK---RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence 888877653 689999999999999999964
No 87
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=3.3e-09 Score=110.75 Aligned_cols=96 Identities=26% Similarity=0.286 Sum_probs=74.3
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc-------c--cccccccCCCCCCCC-CccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG-------L--IGVMHDWCEPFDTYP-RTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG-------l--ig~~~~~ce~~~~yp-~tyDlih 587 (666)
..|||+|||+|.++..|+++ |.+ -+|+.+| ++.|++.+.+|. . +.+.+..+|.++ +| ++||+|.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~---~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~ 150 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSD---GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAIT 150 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEE
Confidence 36999999999999999875 311 1577777 478999887652 1 445556666665 45 8999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+..++.+..+ ...+|.||.|+|||||+++|.|
T Consensus 151 ~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 9988777654 5799999999999999999975
No 88
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.91 E-value=4.6e-09 Score=108.37 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=73.8
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
....|||+|||+|.++..|.+.|. .|+.+| ++.+++.+.+++. +.+.....|.++..+++||+|.++..+...
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-----QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence 345799999999999999998876 556666 3688888888754 344444455555334899999998665543
Q ss_pred CCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 596 SKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
. +...+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 45799999999999999999983
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.91 E-value=4.1e-09 Score=115.24 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC----ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~----~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+|||+|||+|.++..++++ +|+++|.++.++..++.+... .+.. ..+...+... .++.++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 58999999999999888764 899999999988887755433 3221 1222223211 134468999999866
Q ss_pred ccccc--c--ChHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWT--R--DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~--~--d~~~~L~el~RvLkPGG~lv~st 376 (666)
++.-. . ....+++++.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 1 12478999999999999999985
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.90 E-value=8.1e-09 Score=112.76 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC--CCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL--PYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L--pf~d~sFDlVv~s~ 346 (666)
....+||||||+|.++..++.+ +++|+|+++.++..+..+ +...++.+ .+...|+..+ .++++++|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3468999999999999988865 899999999999888654 44556554 3444455443 47789999999754
Q ss_pred cccccccCh------HHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDD------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~------~~~L~el~RvLkPGG~lv~st 376 (666)
. ..|.... ..++.++.|+|+|||.+.+.|
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 5563322 478999999999999999987
No 91
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.89 E-value=1.6e-09 Score=111.35 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred HhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhc----cc--ccccc
Q 005981 499 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMH 570 (666)
Q Consensus 499 ~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~ 570 (666)
+.|++.+... +....+. .|||++||+|-++..|+++ +- --.|+.+| +++||..+.+| |. |-..+
T Consensus 33 ~~wr~~~~~~---~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 33 RRWRRKLIKL---LGLRPGD--RVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp ----SHHHHH---HT--S----EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHhc---cCCCCCC--EEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 4676655433 3333443 6999999999999999876 21 12577777 57999999876 33 66677
Q ss_pred ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 571 DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 571 ~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+|.++.-.++||.|-|+..+... ++....|.||.|||||||.++|-|
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEEee
Confidence 7788877434999999998766554 456899999999999999999964
No 92
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.88 E-value=8.1e-09 Score=105.07 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=72.7
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC----------------CceEEeecccCCCCC-
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP- 335 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~----------------~~~~~~~d~e~Lpf~- 335 (666)
..+|||+|||.|..+..|+++ +|+|+|+|+..+..++ .++++ ...+...|+..++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 468999999999999999988 9999999998876543 22322 123344555555432
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 336 SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
...||+|+-..+++|+.++. ..++..+.++|+|||.+++.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 35899999888778775443 489999999999999755543
No 93
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.87 E-value=3.6e-09 Score=105.77 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=76.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH----Hhccc--cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI----YDRGL--IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~----~erGl--ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|+++|. +|+.+|. +.+++.+ .++|+ +... .+. +.+ .++.+||+|.|..+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~-----~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF-----DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL-NNL-TFDGEYDFILSTVV 104 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh-hhC-CcCCCcCEEEEecc
Confidence 3699999999999999999987 4555553 4455443 34455 2222 333 222 23578999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe---Chh-----------HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---SID-----------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---~~~-----------~~~~~~~i~~~l~W~~~~~ 644 (666)
|.+.. ......++.+|.|+|||||++++-. ..+ ..+++.+.++ .|++...
T Consensus 105 ~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 105 LMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 76544 3356799999999999999965521 110 1345666665 6877554
No 94
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.87 E-value=4.9e-09 Score=108.65 Aligned_cols=100 Identities=12% Similarity=0.207 Sum_probs=75.8
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceE
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDli 586 (666)
..++...+ ..|||+|||.|.++.+|+++ +. .|+.+| ++.+++.+.++++ .+.+...+.+. ...+||+|
T Consensus 23 ~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~-----~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 23 ARVGAERA--RRVVDLGCGPGNLTRYLARRWPGA-----VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEE
Confidence 33444333 56999999999999999987 43 566676 4689999988875 33333334432 23799999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|+.+|.+..+ ...+|.++.|+|||||+++|.
T Consensus 94 ~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 94 VSNAALQWVPE---HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEehhhhhCCC---HHHHHHHHHHhCCCCcEEEEE
Confidence 99998887654 478999999999999999996
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=98.86 E-value=1.4e-08 Score=107.34 Aligned_cols=102 Identities=7% Similarity=0.118 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCchhHHHh-c-----cCCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYL-L-----PRNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L-~-----~~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.+++|||||||.|.++..+ + ...++|+|+++.+++.|+.......++. ..+...|+.+++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 5689999999987443332 2 1279999999999988875554434543 244445544443234789999987
Q ss_pred ccccccc-cChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++++|. .+...++..+.+.|+|||++++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 878885 667899999999999999999985
No 96
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=2.6e-09 Score=110.75 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=71.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCC-CCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTY-PRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~y-p~tyDliha~~ 590 (666)
..|||+|||.|.++..|+++|. +|+.+|. +.++..+.++ |+ +.+.+...+.+..+ +++||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4799999999999999999987 5666663 5777776654 44 33344333333333 48999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
++.+..+. ..+|.++.|+|||||++++.
T Consensus 121 vl~~~~~~---~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVADP---KSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCCH---HHHHHHHHHHcCCCeEEEEE
Confidence 98877543 68999999999999999885
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.86 E-value=1.8e-08 Score=101.98 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeeccc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e 330 (666)
.....+.+.+.. .++.+|||||||+|.++..++.. +|+++|+++.++..++.+.. ..+.. ..+...|..
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcc
Confidence 445556665542 34579999999999988776542 89999999998887765443 34443 344444554
Q ss_pred CCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 331 ~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
....+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 444456889999986553322 346778999999998863
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.85 E-value=4.4e-08 Score=100.44 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=79.5
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d 328 (666)
....+++.+.+.+. ....+|||+|||+|.++..++.. +++|+|+++.++..++.. +...+.. ..+...+
T Consensus 72 ~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 72 DTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSD 145 (251)
T ss_pred ChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECc
Confidence 34456666666654 23458999999999998888764 899999999998877643 3444554 3344444
Q ss_pred ccCCCCCCCCeeEEEecccccc------cccC-------------------hHHHHHHHHHhccCCeEEEEEE
Q 005981 329 TRRLPYPSQAFDLIHCSRCRIN------WTRD-------------------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h------~~~d-------------------~~~~L~el~RvLkPGG~lv~st 376 (666)
... ++++++||+|+|+...+. +..+ ...++.++.++|+|||.+++..
T Consensus 146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 433 455789999998643221 1000 1256889999999999999874
No 99
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=2.8e-08 Score=105.85 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHc-CCCceEEeecccC-CCCCCC----CeeEEE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQ----AFDLIH 343 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d~e~-Lpf~d~----sFDlVv 343 (666)
..+|||+|||+|..+..|+++ +|+++|+|+.|+..++.+..... ++.......|+.+ +++... ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 468999999999988777643 79999999999988876654432 2333334445443 343322 233444
Q ss_pred eccccccccc-ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 344 CSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 344 ~s~~l~h~~~-d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
+...+.++.. +...+|++++++|+|||.|++... .......+..+|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d-~~~~~~~~~~aY 190 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD-LVKDPAVLEAAY 190 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc-CCCCHHHHHHhh
Confidence 4444444422 234789999999999999999854 333444444444
No 100
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.84 E-value=2.3e-08 Score=101.21 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~ 331 (666)
....+.+.+.. .+..+|||||||+|.++..|++. +|+++|+++.++..++.+ ..+.+... .+...|...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEECCccc
Confidence 34555555542 34579999999999999888764 399999999988877644 34445433 334444444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....+.||+|++.....+ +...+.+.|+|||.+++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 3333468999997654322 3456889999999998874
No 101
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.84 E-value=2.5e-09 Score=114.74 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=75.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||+|||.|.++..|+..|+ +|+.+|. +.+++++.++. + |.+.+.-.|.++..+++||+|-|.+++
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 699999999999999999887 6677774 57888887652 2 344455555555444899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.|..+. +.+|.|+.|+|||||.++|.+
T Consensus 209 eHv~d~---~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVANP---AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence 987754 799999999999999999974
No 102
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.83 E-value=2.8e-09 Score=107.73 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=67.2
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC------ceEEeecccCCCCCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP------AMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~------~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
+.++|+|||+|.-++.+++. +|+|+|+++.||. .+.+.-.. ......+...|--.++|.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~-----~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLK-----VAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHH-----HhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 48999999999777777776 9999999998775 44333211 11111122333334899999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.|| -|.+.+++++.|+||+.|-++..
T Consensus 110 -~HW-Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 -VHW-FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -HHh-hchHHHHHHHHHHcCCCCCEEEE
Confidence 888 68899999999999998844443
No 103
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.82 E-value=1.7e-08 Score=100.44 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-C-CCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-L-pf~d~sFDlVv~s~~l~ 349 (666)
..+|||||||+|.++..+++. .++|+|+++.++..+ .++++. +...+++. + ++++++||+|+|+.+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a-----~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLAC-----VARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHH-----HHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 368999999999999888654 789999998876544 334433 33334433 4 36778999999998866
Q ss_pred ccccChHHHHHHHHHhccC
Q 005981 350 NWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkP 368 (666)
|. .++..+|+++.|++++
T Consensus 87 ~~-~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 AT-RNPEEILDEMLRVGRH 104 (194)
T ss_pred cC-cCHHHHHHHHHHhCCe
Confidence 65 8888999999887664
No 104
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.82 E-value=2.8e-09 Score=101.07 Aligned_cols=93 Identities=26% Similarity=0.395 Sum_probs=68.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~ 598 (666)
.+|||+|||.|.++..|++.|+ +|+.+|. +.+++. +......++-.+. ...+++||+|+|.++|.|..+
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~-----~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGF-----EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTS-----EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSSH-
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhccc-
Confidence 4699999999999999999987 5666663 344444 2222222211111 112389999999999999885
Q ss_pred CCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 599 CNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
...+|.+|.|+|||||+++|.+..
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 589999999999999999998654
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.5e-08 Score=106.33 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=78.7
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCC
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY 334 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf 334 (666)
+.|++.++.. ...+|||+|||.|.++..|++. +++-+|++...+..++.+.+ .+++.. .+...+ ...+.
T Consensus 148 ~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~~s~-~~~~v 221 (300)
T COG2813 148 RLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVWASN-LYEPV 221 (300)
T ss_pred HHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEEEec-ccccc
Confidence 3455555531 2238999999999999999875 89999999988877775444 455554 333332 22333
Q ss_pred CCCCeeEEEecccccccccChH----HHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDG----ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~----~~L~el~RvLkPGG~lv~st~ 377 (666)
.+ +||+|+|+--+|.-..-.. +++.+..+.|++||.|.+...
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44 9999999877554433233 889999999999999999864
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=2.6e-08 Score=85.08 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=70.2
Q ss_pred eEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC-CCCCeeEEEecccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf-~d~sFDlVv~s~~l~h~~ 352 (666)
+|||+|||+|.++..+... +++++|+++..+..++............+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999998888862 899999999876655421111111122333334444332 457899999988766534
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 005981 353 RDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 353 ~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.....+++.+.+.|++||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 66779999999999999999876
No 107
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.79 E-value=1.2e-08 Score=107.97 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=79.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH----HHhccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV----IYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~----~~erGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||.|.++.+|+++|+ .|+.+|. +.+++. +.++|+ +.+. .|. +... .+..||+|.+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~~~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDI-NSAS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEech-hccc-ccCCccEEEEcchhh
Confidence 699999999999999999987 4555553 344444 344566 2222 121 1111 268999999998887
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEE---eCh-----------hHHHHHHHHHHhcCcEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIR---DSI-----------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d~~-----------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
+.. +-++..++.+|.|+|||||++++- +.. -.-++|+++++. |++....
T Consensus 196 ~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 654 345789999999999999996652 111 125677887776 8887653
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.79 E-value=6.7e-08 Score=96.29 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=72.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc----CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR- 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~- 331 (666)
....+.+.+.. ....+|||+|||+|.++..++. .+|+++|+++.++..++.+.. +.+... .+...++..
T Consensus 28 v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 28 VRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHH
Confidence 33344555531 3457899999999999887753 289999999999888765443 344432 333333322
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.....+|.|+.. ...+...++.++.++|+|||.+++...
T Consensus 103 ~~~~~~~~d~v~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIE-----GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEE-----CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22222346776532 123457899999999999999999863
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.79 E-value=3.5e-08 Score=105.11 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~ 346 (666)
.+..+|||||||+|.++..++++ +++++|. +.++..++ +.+.+.++.. .+...|..+.+++ .+|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence 34579999999999999888765 7999997 56776655 3444555543 3344455544554 369999888
Q ss_pred cccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
++|+|.++. ..+|++++++|||||.+++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888884433 4799999999999999999865
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.78 E-value=4.8e-08 Score=105.27 Aligned_cols=103 Identities=22% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
++.+|||+|||+|.++...+.. .++|+|+++.|+..++.+. +..+... .+...|+.++++.+++||+|+++.....
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 4578999999999887665433 8999999999998776544 3445443 4555678888888889999998532111
Q ss_pred -------cccC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 -------WTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 -------~~~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
...+ ...++.++.|+|||||.+++..+
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 0011 35889999999999999998864
No 111
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.77 E-value=7e-09 Score=103.54 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=77.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHH----hccc-cccccccCCCCCCCCCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIY----DRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~----erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
..|||+|||+|.++.+|+++|. .|+.+|. +.+++.+. +.|+ +.....-++.. .++.+||+|.+..+|.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-ALNEDYDFIFSTVVFM 105 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cccCCCCEEEEecccc
Confidence 3699999999999999999987 4555653 45565443 3454 22221111222 2357899999998887
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----------hh---HHHHHHHHHHhcCcEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------ID---VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------~~---~~~~~~~i~~~l~W~~~~~~ 645 (666)
+... -.++.++.++.|+|||||+++|-+. .. ..++|.+++.. |++...+
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 6543 3567999999999999999555310 11 24566666654 7766554
No 112
>PRK14968 putative methyltransferase; Provisional
Probab=98.77 E-value=1.1e-07 Score=92.93 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+..+|||+|||+|.++..++.+ +|+++|+++.++..++.+.. ..+.. ..+...|... ++.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3468999999999999888766 99999999998877764433 33332 2333333322 3445689999986543
Q ss_pred cccc--------------------cChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWT--------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~--------------------~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+.. .....+++++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3210 012467999999999999998874
No 113
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.76 E-value=1.1e-08 Score=92.61 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=70.6
Q ss_pred CeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCC--CCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lp--f~d~sFDlVv~s~~l 348 (666)
.+|||+|||+|.++..+++ .+++++|+++..+..++..... .+. ...+...|...+. +.+++||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5899999999988877764 4899999999877666644433 333 2345555655544 678999999987665
Q ss_pred cccccC-------hHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d-------~~~~L~el~RvLkPGG~lv~st 376 (666)
...... ...+++++.++|||||.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 533211 2478999999999999999875
No 114
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.76 E-value=1.8e-08 Score=101.90 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=81.6
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHh----ccc---cccccccCCCCCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.|||+|||.|+++..+++. ++ +|+.+| ++.++..+.+ +|+ +.+...-.+.. .++.+||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-----~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-----QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHH
Confidence 5999999999999999886 23 444454 3566665554 355 44444333222 3468999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------HHHHHHHHHHhcCcEEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------~~~~~~~i~~~l~W~~~~ 643 (666)
+|.+..+ ...++.++.|+|||||++++.|... ...++.+++++-.+++..
T Consensus 76 ~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 8888754 4799999999999999999986421 145677778888877653
No 115
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.76 E-value=8.1e-08 Score=97.66 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=71.5
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC-Cc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp-~t 582 (666)
+.+..+ .+|||+|||.|.++..|++. +.. .+|+.+|. +.+++.+.++ ++ +.+.+.-.+.++ +| .+
T Consensus 41 l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 114 (231)
T TIGR02752 41 MNVQAG--TSALDVCCGTADWSIALAEAVGPE---GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNS 114 (231)
T ss_pred cCCCCC--CEEEEeCCCcCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCC
Confidence 344444 35999999999999999875 211 14555663 4666665543 33 444555555443 44 89
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
||+|++...+.+..+ ...+|.|+.|+|||||++++.|.
T Consensus 115 fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 115 FDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 999999877665543 46899999999999999998753
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.72 E-value=9.4e-08 Score=96.32 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=71.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY 334 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf 334 (666)
....+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.++.+ .+... .+...+......
T Consensus 66 ~~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCC
Confidence 34455555442 34579999999999988776654 899999999888777654443 34432 333334322111
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..+.||+|++.....+ +..++.+.|+|||.+++..
T Consensus 141 ~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 141 AYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEE
Confidence 3478999998654332 2456789999999999874
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.71 E-value=1.4e-07 Score=93.29 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=67.3
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC-
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP- 333 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp- 333 (666)
.++.+....+ .++.+|||+|||+|.++..++.+ +|+++|+++.+ ...++ .+...+..+..
T Consensus 21 ~~~~~~~~~i---~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i--~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLI---KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENV--DFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhccc---CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCc--eEEEeeCCChhH
Confidence 3444444433 34579999999999988777543 59999999853 11122 23333443322
Q ss_pred -------CCCCCeeEEEecccc---cccccC-------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -------YPSQAFDLIHCSRCR---INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -------f~d~sFDlVv~s~~l---~h~~~d-------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++++||+|++..+. -+|..+ ...++.++.++|+|||.+++..+
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 456789999975431 112111 25789999999999999999753
No 118
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.70 E-value=9.5e-08 Score=95.47 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCC-C-ceEEeecccC-CCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~-~-~~~~~~d~e~-Lpf~d~sFDlVv~ 344 (666)
....+|||+|||+|.++..++. .+|+++|+++.++..++.+. +..++ . ..+...+... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 3457999999999998876542 27999999999988776443 34442 2 2333334433 3323468999997
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
... ..+...++.++.++|||||.+++..
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 431 2456789999999999999998864
No 119
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.70 E-value=8.9e-08 Score=98.54 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCce
Q 005981 246 GGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM 323 (666)
Q Consensus 246 gggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~ 323 (666)
|.|.||--...++.+-+...-.....+....++||||+|.|..+..++.. +|++.++|+.|. ..-+++|...
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~v- 139 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFTV- 139 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCeE-
Confidence 56777765655554444322111111235578999999999999999876 899999999874 3334566532
Q ss_pred EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 324 ~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.+..++.-.+.+||+|.|.+++-.- .++..+|+++++.|+|+|.++++.
T Consensus 140 ---l~~~~w~~~~~~fDvIscLNvLDRc-~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 140 ---LDIDDWQQTDFKFDVISCLNVLDRC-DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---EehhhhhccCCceEEEeehhhhhcc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 1223333345689999999885554 889999999999999999999984
No 120
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.68 E-value=9.3e-06 Score=89.12 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=81.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----c-----ccccccccCCCCCCCC-CccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----G-----LIGVMHDWCEPFDTYP-RTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----G-----lig~~~~~ce~~~~yp-~tyDliha 588 (666)
..|||+|||+|-.+.+|++++- -..|+.+|. ..+++.+.+. + -+.++++.| +...+ .+||+|.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc--cccCCCCCEEEEEE
Confidence 3699999999999999988721 114555663 4566555432 2 134444333 33333 68999999
Q ss_pred ccccccCCCCC--CHHHHHHHhhhcccCCeEEEEEe--ChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 589 AGLFSVESKRC--NMSTIMLEMDRMLRPGGHVYIRD--SIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 589 ~~~f~~~~~~c--~~~~~l~E~dRiLRPgG~~ii~d--~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+--|...+... ....++.++.|+|||||.++|-- ......+|+++.. .+..... ..+.+||-++|
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~----~~kf~vl~a~k 373 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIAT----NNKFVVLKAVK 373 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEcc----CCCEEEEEEEe
Confidence 87765432111 23578899999999999999963 2345566666543 2333222 23678888888
No 121
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.68 E-value=1e-07 Score=98.14 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=75.5
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCC--CCCCCeeEEEecc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLP--YPSQAFDLIHCSR 346 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lp--f~d~sFDlVv~s~ 346 (666)
..+|||+|||+|.++..++++ +|++||+.+.+...|+...+. .++.. .+...|+..+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 579999999999999999877 899999999988888766655 23322 34444655544 3345799999975
Q ss_pred cccccc-----------------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWT-----------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~-----------------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-.+.-. -+.+.+++...++||+||++.+..+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 433221 2245788889999999999999954
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.68 E-value=1.2e-07 Score=96.89 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHH------------HHHcCCCceEEeecccCCCCC---C
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 336 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~------------a~~rg~~~~~~~~d~e~Lpf~---d 336 (666)
...+||+.|||.|.-+.+|+++ +|+|+|+|+..+..+..+. ...++....+.+.|.-.++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 3469999999999999999988 9999999998887654321 011233445666677777532 2
Q ss_pred CCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~ 377 (666)
+.||+|+-..+++++.++.. .+.+.+.++|+|||.+++.+.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 68999998788888865543 899999999999999888754
No 123
>PRK04266 fibrillarin; Provisional
Probab=98.68 E-value=8.7e-08 Score=98.08 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC----CCCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~----Lpf~d~sFDlVv~ 344 (666)
.++.+|||+|||+|.++..+++. .|+++|+++.|+.... +.++++. +......|... .++. ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~~-nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEERK-NIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhcC-CcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 34579999999999999888765 6999999999887654 3444331 22233334332 1223 56999985
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
... ..+ ....++.++.|+|||||.++++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 422 111 1235689999999999999996
No 124
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.67 E-value=8.4e-08 Score=95.83 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=63.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~ 337 (666)
++.+.+.+... .....|.|+|||.+.++..+.+. .|...|+... ...+...|+..+|++++
T Consensus 60 vd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS----TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc---CCCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCC
Confidence 34444555421 23468999999999999888765 7999998642 12356678899999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.|++++..+++. .+...++.|+.|+||+||.|.+++.
T Consensus 122 svDv~VfcLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 122 SVDVAVFCLSLMG--TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp -EEEEEEES---S--S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEEhhhhC--CCcHHHHHHHHheeccCcEEEEEEe
Confidence 9999998766444 5889999999999999999999964
No 125
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.67 E-value=1.9e-08 Score=100.19 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=81.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.+||+|||.|.-|.+|+++|++|...-..++.-.....+|.+++| |.+...-.+.+. ++..||+|.+..+|.+.. +-
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~~~yD~I~st~v~~fL~-~~ 110 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FPEEYDFIVSTVVFMFLQ-RE 110 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEESSGGGS--GG
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-ccCCcCEEEEEEEeccCC-HH
Confidence 599999999999999999999555544444433445567777888 444433333333 468999999988888877 45
Q ss_pred CHHHHHHHhhhcccCCeEEEEE---eC--------hhH---HHHHHHHHHhcCcEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIR---DS--------IDV---MDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~---d~--------~~~---~~~~~~i~~~l~W~~~~~~ 645 (666)
.++.++..|..-|+|||+++|- +. .+. -++|..... .|++....
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 7789999999999999999883 11 112 355666666 59986543
No 126
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.67 E-value=1.4e-08 Score=91.02 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=68.4
Q ss_pred eEeeccccchHHHHHHhh--CCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.|||+|||.|.++.+|++ .+. .|+.+|. +.+++.+.++- + |.+++.-.+.....+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA-----RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS-----EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 589999999999999999 677 5666663 56777766654 3 5555444311233456799999998
Q ss_pred -ccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 591 -LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 591 -~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+..+-.......+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22222211334688999999999999999975
No 127
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.66 E-value=6.5e-08 Score=93.64 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=62.5
Q ss_pred EEEeCCcchHHHHHHHHHHHc--C-CCceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEE
Q 005981 298 ITMSIAPKDVHENQIQFALER--G-APAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 298 ~gvDiS~~~l~~a~~~~a~~r--g-~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~ 374 (666)
+|+|+|+.|+..|+.+..... + ....+...|++++|+++++||+|+++.+++++ .+...+|++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999988764432211 1 12345666789999999999999988776555 8899999999999999999998
Q ss_pred EEC
Q 005981 375 AAQ 377 (666)
Q Consensus 375 st~ 377 (666)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 865
No 128
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.66 E-value=8.4e-08 Score=102.70 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=77.9
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH---Hh----ccccccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI---YD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~---~e----rGlig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
+.|||+|||.|.++.+|+..|.. .|+.+|. ..++..+ .. .+.+.+...-.|.++. +.+||+|.|.++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~----~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gv 197 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK----SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGV 197 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcch
Confidence 46999999999999999988752 4566663 3444321 11 1122222222333332 358999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeC----h--------h------------HHHHHHHHHHhcCcEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----I--------D------------VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~----~--------~------------~~~~~~~i~~~l~W~~~~ 643 (666)
+.|.. +..++|.|+.|+|||||.+|+.+. . + ....++..+++..++...
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 88764 457999999999999999998621 0 0 135667778888887653
No 129
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.66 E-value=2.8e-08 Score=106.89 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=67.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH--HHhc--c---ccccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV--IYDR--G---LIGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~--~~er--G---lig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
+.|||+|||.|.++.+|++.|.. .|+.+|. +.++.. +..+ + -+-+.+.-.|.++. +.+||+|+|.++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~----~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK----LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 56999999999999999998742 2555653 333321 1111 1 13344444455554 789999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.|.. +...+|.++.|+|||||.+||.
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 87754 4579999999999999999986
No 130
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.65 E-value=5.5e-08 Score=106.98 Aligned_cols=101 Identities=25% Similarity=0.391 Sum_probs=74.5
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhcc--c-cccccccCCCCCCCCCccc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG--L-IGVMHDWCEPFDTYPRTYD 584 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erG--l-ig~~~~~ce~~~~yp~tyD 584 (666)
+.+++..+. .|||+|||.|+++.+|++. |+ .|+.+| ++.+++.+.+|. + +.+... .+...+.+||
T Consensus 161 ~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~-----~V~giDlS~~~l~~A~~~~~~l~v~~~~~---D~~~l~~~fD 230 (383)
T PRK11705 161 RKLQLKPGM--RVLDIGCGWGGLARYAAEHYGV-----SVVGVTISAEQQKLAQERCAGLPVEIRLQ---DYRDLNGQFD 230 (383)
T ss_pred HHhCCCCCC--EEEEeCCCccHHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHhccCeEEEEEC---chhhcCCCCC
Confidence 445555553 5999999999999999986 65 566666 467888887763 3 222221 1222367999
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|.+.++|.+.+. .+.+.++.++.|+|||||++++.
T Consensus 231 ~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 231 RIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999988754 34678999999999999999996
No 131
>PRK05785 hypothetical protein; Provisional
Probab=98.64 E-value=8.4e-08 Score=98.12 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=69.0
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||+|-++.+|+++ +. +|+.+| +++|++.+.+++ ...+..+|.++.-+++||+|.+...+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~-----~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~-- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY-----YVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS-- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC-----EEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc--
Confidence 46999999999999999988 44 788888 579999998874 33456666665334999999998766544
Q ss_pred CCCHHHHHHHhhhcccCCe
Q 005981 598 RCNMSTIMLEMDRMLRPGG 616 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG 616 (666)
-+.+.+|.||.|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 356899999999999954
No 132
>PRK00811 spermidine synthase; Provisional
Probab=98.62 E-value=3.5e-07 Score=96.69 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-C----CCceEEeecccC-CCCCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-G----APAMVAAFATRR-LPYPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g----~~~~~~~~d~e~-Lpf~d~sFDlV 342 (666)
..+++||+||||+|..+..++++ +|+++|+++.++..++..+.... + ....+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999988765 79999999998887765443321 1 112333344322 23346789999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
++... .++... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 97533 333222 1477899999999999998864
No 133
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=7e-08 Score=101.03 Aligned_cols=101 Identities=28% Similarity=0.505 Sum_probs=81.4
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChh----HHHhccc---ccc-ccccCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGL---IGV-MHDWCEPFDT 578 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~----~~~erGl---ig~-~~~~ce~~~~ 578 (666)
.+.++++.|.- |||+|||.|+++.+++++ |+ +|+.++ +++++. .+.++|+ +.+ ++|| ..
T Consensus 65 ~~kl~L~~G~~--lLDiGCGWG~l~~~aA~~y~v-----~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd 133 (283)
T COG2230 65 LEKLGLKPGMT--LLDIGCGWGGLAIYAAEEYGV-----TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RD 133 (283)
T ss_pred HHhcCCCCCCE--EEEeCCChhHHHHHHHHHcCC-----EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cc
Confidence 45677888876 999999999999999998 66 666666 356664 4556788 444 5777 45
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+...||-|-|.++|.|.+. .+..+.+.-++++|+|||.+++-
T Consensus 134 ~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 134 FEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 5556999999999999886 46789999999999999999984
No 134
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.61 E-value=1.5e-07 Score=97.45 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=78.3
Q ss_pred eeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEecccccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
-.+|||+|||.|.++.+|+++ +. +|+.+|. +.+++.+.++-- +.+...-.+.+. .+.+||+|+|+.+|.+
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAA-----RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhh
Confidence 357999999999999999886 33 5667774 578887766621 333333333222 2379999999988876
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe--Ch--hHHHHHHHHHHhcCcEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD--SI--DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d--~~--~~~~~~~~i~~~l~W~~ 641 (666)
..+ ...+|.++.|+|||||.+++.- .. .....++++.....|..
T Consensus 106 ~~d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 106 LPD---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 654 4789999999999999999962 11 11223455555555653
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.60 E-value=2e-07 Score=100.56 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHc------C----CCceEEeeccc------CCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------G----APAMVAAFATR------RLPY 334 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~r------g----~~~~~~~~d~e------~Lpf 334 (666)
+..+|||+|||-|.-...+... .++|+|++...+.+|+.+...-+ . ..+.+...|.. .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5689999999988655444433 89999999999998887663211 1 12233333311 1222
Q ss_pred CCCCeeEEEecccccccccChH---HHHHHHHHhccCCeEEEEEEC
Q 005981 335 PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~lv~st~ 377 (666)
....||+|-|..++|+.....+ .+|..+.+.|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2359999998888666655543 689999999999999999975
No 136
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.60 E-value=5.8e-07 Score=93.71 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
+.+++.+...+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..++.+..........+...|...
T Consensus 94 e~l~~~~~~~~~~----~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLL----KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccc----cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 3445555433321 34468999999999988887653 799999999988777654441111122333334322
Q ss_pred CCCCCCCeeEEEeccccccc------c-------------------cChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINW------T-------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~------~-------------------~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++..++||+|+++...... . .....++.++.++|+|||++++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2335789999986332211 0 012357788889999999999864
No 137
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.59 E-value=2.4e-07 Score=90.87 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=83.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
+|||+|||+|.++..|++.+. .|+.+|. +.+++.+.++ |+ +.++ -|+.+ ..+.+||+|.++--|.
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYL 93 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCC
Confidence 599999999999999999864 4666663 5666555442 33 3333 23322 2247999999986664
Q ss_pred cCCC------------------CCCHHHHHHHhhhcccCCeEEEEEeChhH-HHHHHHHHHhcCcEEEEEec
Q 005981 594 VESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~ii~d~~~~-~~~~~~i~~~l~W~~~~~~~ 646 (666)
+..+ ++.++.+|.++.|+|+|||.+++.+.... ...+.+.++...|+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 3221 12256889999999999999999876554 77888888888998877654
No 138
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.59 E-value=7.5e-07 Score=98.18 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=76.0
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
..+.+++.+.+.+. +..+|||+|||+|.++..++.. +|+++|+|+.++..++.+ +...+....+...|.
T Consensus 237 eTE~LVe~aL~~l~------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl 309 (423)
T PRK14966 237 ETEHLVEAVLARLP------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSW 309 (423)
T ss_pred cHHHHHHHhhhccC------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcch
Confidence 34455666555443 2258999999999998877642 899999999999888754 344454444544554
Q ss_pred cCCCC-CCCCeeEEEecccccccc--------------------cC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 330 RRLPY-PSQAFDLIHCSRCRINWT--------------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 e~Lpf-~d~sFDlVv~s~~l~h~~--------------------~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
....+ ..++||+|+|+--.+.-. .+ ...++.++.+.|+|||.+++..
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33222 245899999865432110 01 1256667788999999998864
No 139
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=1.7e-07 Score=95.05 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=71.9
Q ss_pred CeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHH-HcCCCceEEeecccCC--CCCCCCeeEEEecc
Q 005981 276 RVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRL--PYPSQAFDLIHCSR 346 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~-~rg~~~~~~~~d~e~L--pf~d~sFDlVv~s~ 346 (666)
.+||+||||.|....-|.+. .|.+.|+|+..+...+.+... +....+.+...+.+.+ +...+++|+|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999777666543 699999999876543321111 1112333333333333 45679999999988
Q ss_pred cccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
++..+.++. ..++.+++++|||||.+++...
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 877776554 4899999999999999999965
No 140
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.58 E-value=9.1e-08 Score=96.10 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=85.6
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccC-CCCCC-C-CCccceEEe
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWC-EPFDT-Y-PRTYDLLHA 588 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~c-e~~~~-y-p~tyDliha 588 (666)
-.+|||+|||+|.++..|+++.-. .+|+.+| ++.+++.+.++ |+ +.+.+.-. +.++. + +.+||+|.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~---~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD---INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC---ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 357999999999999999876211 1566666 35666666542 44 44455444 44442 4 489999987
Q ss_pred ccccc-----cCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEe
Q 005981 589 AGLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 589 ~~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~ 645 (666)
..... +...+...+.+|.++.|+|||||.++|. +.......+.+.+..-.|++.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEA 180 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccc
Confidence 63221 1122233578999999999999999996 677778888888888888887543
No 141
>PRK14968 putative methyltransferase; Provisional
Probab=98.58 E-value=2.5e-07 Score=90.44 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=88.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----c-----ccccccccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----G-----LIGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----G-----lig~~~~~ce~~~~yp~tyDliha~ 589 (666)
..|||+|||.|.++..|++++. +|+.+|. +.++..+.++ | +.-+.+|+.+.+. +.+||+|-++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEEC
Confidence 3699999999999999999876 5555553 4555555322 2 3223455654432 2589999887
Q ss_pred cccccCC------------------CCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 590 GLFSVES------------------KRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 590 ~~f~~~~------------------~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
.-|.... ....+..++.++.|+|||||++++-.. ....+.+.+.+....|++.....+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5553311 022256789999999999999988633 334677888999999987655443333
Q ss_pred CCceEEEEEEe
Q 005981 651 HASYRILTADK 661 (666)
Q Consensus 651 ~~~e~~l~~~k 661 (666)
.+.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 44445555554
No 142
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.56 E-value=8.7e-08 Score=91.35 Aligned_cols=97 Identities=21% Similarity=0.394 Sum_probs=71.9
Q ss_pred eeEeeccccchHHHHHHhh-C--CCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCCCCC-CCCccceEEe
Q 005981 520 RNVLDMRAGFGGFAAALIE-Q--KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHA 588 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~-~--~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp~tyDliha 588 (666)
-+|||+|||+|.++..|++ . +. +++.+| ++.+++.+.++ |+ +-+.+..-+.++. |+..||+|.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~-----~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA-----KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS-----EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC-----EEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence 3699999999999999994 3 44 577777 46788777773 55 4455444333332 4489999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
.+++.+.. +...+|.+|-|.|+|||.+++++..
T Consensus 80 ~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98885544 3468999999999999999999766
No 143
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.56 E-value=2.9e-07 Score=97.42 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEecccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 468999999999999888754 799999999999888754 4445543 2334444322 2345689999986221
Q ss_pred cc----------cccC--------------hHHHHHHHHHhccCCeEEEEEE
Q 005981 349 IN----------WTRD--------------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h----------~~~d--------------~~~~L~el~RvLkPGG~lv~st 376 (666)
.. +..+ ...++.++.++|+|||.+++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 0001 1366888999999999999875
No 144
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.56 E-value=5.4e-08 Score=97.74 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=103.1
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccccc-cccCCCCC--CCCCccceEEec
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM-HDWCEPFD--TYPRTYDLLHAA 589 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig~~-~~~ce~~~--~yp~tyDliha~ 589 (666)
...|..|.+||+|||+|-+|-+|.+.-. -+..+| +.|||..+.|+|+.-.+ |.-...|. .-++-||||-+.
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhh
Confidence 4566799999999999999999987622 466677 57999999999994433 54444455 346899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-----eCh-----------hHHHHHHHHHHhcCcEEEEEe-----ccC
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-----DSI-----------DVMDELQEIGKAMGWHVTLRE-----TAE 648 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-----d~~-----------~~~~~~~~i~~~l~W~~~~~~-----~~~ 648 (666)
+||...+. ++.++.-+.+.|.|||.|+|+ |.- .....|...+++-.-++.... .+.
T Consensus 196 DVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~ 272 (287)
T COG4976 196 DVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDA 272 (287)
T ss_pred hHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhc
Confidence 99998875 479999999999999999998 111 114568888888888865331 122
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
|.-.+..+.|++|+
T Consensus 273 g~pv~G~L~iark~ 286 (287)
T COG4976 273 GEPVPGILVIARKK 286 (287)
T ss_pred CCCCCCceEEEecC
Confidence 22344456666664
No 145
>PTZ00146 fibrillarin; Provisional
Probab=98.55 E-value=2e-07 Score=98.19 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC--
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-- 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-- 331 (666)
...|+.-+..+. -.+..+|||+|||+|.++.++++. .|+++|+++.++... .+.+..+. .......|+..
T Consensus 118 aa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-l~~ak~r~-NI~~I~~Da~~p~ 194 (293)
T PTZ00146 118 AAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-TNMAKKRP-NIVPIIEDARYPQ 194 (293)
T ss_pred HHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-HHHhhhcC-CCEEEECCccChh
Confidence 334444444321 135579999999999999998875 699999998655332 23444331 22233334322
Q ss_pred -CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 -LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 -Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.....+||+|++... +. ++...++.++.++|||||+|++.
T Consensus 195 ~y~~~~~~vDvV~~Dva--~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA--QP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhcccCCCCEEEEeCC--Cc-chHHHHHHHHHHhccCCCEEEEE
Confidence 2223458999997653 21 33446777999999999999996
No 146
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.55 E-value=1.1e-07 Score=93.95 Aligned_cols=107 Identities=15% Similarity=0.338 Sum_probs=75.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHH----hccc--cccccccCCCCCCCCCccceEEecccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIY----DRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~----erGl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.+|||+|||+|.++..|+..+-+ ..|+.+|. +.+++++. +.|+ +.+.+.-.+.+. ...+||+|.|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~---~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 46999999999988888754211 24667774 45554443 3465 555655555542 358999999874 1
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhc
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM 637 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l 637 (666)
..+++++.++.|+|||||.+++.+......++..+.+++
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC 157 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence 356789999999999999999997777777777766663
No 147
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.55 E-value=7.5e-07 Score=94.15 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=68.4
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... ++++++||+|+++.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999988888753 899999999998877754 4444543 2344344322 34445899999862211
Q ss_pred ------------cccc------------ChHHHHHHHHHhccCCeEEEEEE
Q 005981 350 ------------NWTR------------DDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 ------------h~~~------------d~~~~L~el~RvLkPGG~lv~st 376 (666)
++.+ ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1101 12367888999999999998874
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.54 E-value=5.7e-07 Score=106.28 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc----cccccccC-CCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL----IGVMHDWC-EPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl----ig~~~~~c-e~~~~yp~tyDliha~ 589 (666)
+.|||+|||+|+|+.+++..|.. .|+.+|. +..++.+.+. |+ +.+++.-+ +.+..+.++||+|-++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46999999999999999998762 4666774 5666655442 33 22332222 1122235789999986
Q ss_pred cc-cccCCC-------CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEec
Q 005981 590 GL-FSVESK-------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 590 ~~-f~~~~~-------~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
-= |..... .-++..++...-|+|+|||.+++...........+.+..-++++.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 21 211110 1124578888899999999999975555444556777777888876643
No 149
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=4.4e-07 Score=101.30 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC--CCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp--f~d~sFDlVv~s~~ 347 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|....+...|...++ +..++||.|++...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN-LQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 4578999999999988887653 799999999999887644 4445555445555655543 34578999994321
Q ss_pred c-----------cccccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 R-----------INWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l-----------~h~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. +.|... ...+|.++.++|||||.+++++-
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 112111 12689999999999999999974
No 150
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.51 E-value=7.8e-07 Score=92.26 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=83.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|..+.++++.|.. .|+.+|. +.+++.+.++.- -++ .+..+ +..-..+||+|.|+-..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~-~~~~~-~~~~~~~fD~Vvani~~----- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGV-ELNVY-LPQGDLKADVIVANILA----- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCC-CceEE-EccCCCCcCEEEEcCcH-----
Confidence 46999999999999999888763 2555553 456666655421 111 01100 00001279999987321
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
-.+..++.++.|+|||||++|+++-. +....+.+.++...+++.....+. ....++++|+
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~----~W~~~~~~~~ 250 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERG----EWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeC----CEEEEEEEeC
Confidence 12457889999999999999999754 356788888999999887655433 3566676663
No 151
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.50 E-value=3.2e-07 Score=99.16 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred eeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccc---cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
..|||+|||+|.++..|++. +. .+|+.+| ++.+++.+.++.- +.+.+...|.++.-+.+||+|.+.+++.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~----~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 36999999999999888765 21 2566666 3678888777531 44455555544433489999999988877
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEeChh-----------------HHHHHHHHHHhcCcEEEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------------VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-----------------~~~~~~~i~~~l~W~~~~~ 644 (666)
..+. +.+|.|+.|+|||||.+++.+... ..+++.+++++..++....
T Consensus 191 ~~d~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 191 WPDP---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCCH---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 6654 689999999999999998864211 2467778888888875433
No 152
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.50 E-value=3.7e-07 Score=88.88 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
...+|||||||+|.++..++++ +|+++|+++.++..++..... .....+...|+.++++++..||.|+++.. .+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3468999999999999999876 899999999888766544322 11234555677888877778999997543 444
Q ss_pred ccChHHHHHHHHH--hccCCeEEEEE
Q 005981 352 TRDDGILLLEVNR--MLRAGGYFAWA 375 (666)
Q Consensus 352 ~~d~~~~L~el~R--vLkPGG~lv~s 375 (666)
. ...+..+.+ .+.++|.+++.
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEE
Confidence 2 233333332 24578888776
No 153
>PRK08317 hypothetical protein; Provisional
Probab=98.49 E-value=4.8e-07 Score=91.21 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=72.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--cc---cccccccCCCCCCCCCcc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--GL---IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--Gl---ig~~~~~ce~~~~yp~ty 583 (666)
+.+.+..+ ..|||+|||.|.++..+++...+ .-+|+.+|. +.+++.+.++ +. +.+...--+.++.-+.+|
T Consensus 13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGP--EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 33444443 35999999999999999876200 015666663 5777888776 21 222222212222223899
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|+|++..+|.+..+ ...++.++.|+|||||++++.+
T Consensus 89 D~v~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 99999998888765 4789999999999999999864
No 154
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.49 E-value=4.7e-07 Score=96.85 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=68.8
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++. ..+...|... .+++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 899999999999887754 4444543 2334444322 23456899999863211
Q ss_pred c------------ccc--------C----hHHHHHHHHHhccCCeEEEEEE
Q 005981 350 N------------WTR--------D----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 350 h------------~~~--------d----~~~~L~el~RvLkPGG~lv~st 376 (666)
. +.+ + ...++.++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 100 0 1367889999999999999874
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.48 E-value=3.7e-07 Score=95.83 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcC------CCceEEeec------ccCCCCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG------APAMVAAFA------TRRLPYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg------~~~~~~~~d------~e~Lpf~d~s 338 (666)
+...+||+|||-|.-....-.+ .++|+||+...+.+|+.+.-.-++ ..+.+..+| .+.+++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4467999999999665555444 899999999999888765543222 123444443 2445666777
Q ss_pred eeEEEecccccccc-cC---hHHHHHHHHHhccCCeEEEEEEC
Q 005981 339 FDLIHCSRCRINWT-RD---DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 339 FDlVv~s~~l~h~~-~d---~~~~L~el~RvLkPGG~lv~st~ 377 (666)
||+|-|..+ +|+. .. ...+|+++.+.|||||+|+-+.+
T Consensus 197 fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 999988777 5554 33 34789999999999999987743
No 156
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.48 E-value=9e-07 Score=87.44 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCCCc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp~t 582 (666)
..+.+..+ .+|||+|||.|.++.++++++-+ .+|+.+|. +.+++.+.+ .|+ +.+..... ...++..
T Consensus 25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~ 97 (187)
T PRK08287 25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPS---LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGK 97 (187)
T ss_pred HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcC
Confidence 33444433 46999999999999999876311 24666663 455655543 233 33332221 1234578
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe-ChhHHHHHHHHHHhcCcE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d-~~~~~~~~~~i~~~l~W~ 640 (666)
||+|.+.+.. ..+..++.++.|+|+|||++++.+ ..+...++.+++++.+|+
T Consensus 98 ~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 98 ADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 9999987432 346789999999999999999986 456677888889888885
No 157
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.48 E-value=4.5e-07 Score=92.60 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
....|.|+|||.+.++... ...|..+|+.+. ...+..+|+.++|+++++.|++++..+ -+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 3468999999999877521 128999987642 223556678899999999999996544 3346
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...++.|++|+|++||.++++..
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 889999999999999999999963
No 158
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.48 E-value=1.5e-07 Score=96.58 Aligned_cols=95 Identities=7% Similarity=0.133 Sum_probs=69.1
Q ss_pred eeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDli 586 (666)
..|||+|||.|.++..|+++ ++ +|+.+|. +.++..+.++ +. +.+.+.- +..+| ..+|+|
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~-----~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~d~v 126 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV-----KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND---IRHVEIKNASMV 126 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC-----eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECC---hhhCCCCCCCEE
Confidence 35999999999999998874 33 5667773 6788877664 22 3333333 22333 569999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+..++.+..+. +...+|.++.|+|+|||.++++|.
T Consensus 127 ~~~~~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 998887776432 346899999999999999999975
No 159
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.46 E-value=1.3e-07 Score=83.33 Aligned_cols=90 Identities=24% Similarity=0.355 Sum_probs=51.3
Q ss_pred eeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc--cccccccCCC-CCCCC-CccceEEeccccc
Q 005981 523 LDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl--ig~~~~~ce~-~~~yp-~tyDliha~~~f~ 593 (666)
||+|||+|.+..+|+++. -...++.+| ++.+++.+.+| +. .....--+.. +...+ .+||+|.+..++.
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799999999999998882 234566666 35666444333 22 1122212222 23333 5999999999999
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEE
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHV 618 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ 618 (666)
+. -++..+|..+.++|||||.+
T Consensus 78 ~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----S-HHHHHHHHTTT-TSS-EE
T ss_pred hh---hhHHHHHHHHHHHcCCCCCC
Confidence 98 35689999999999999986
No 160
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.45 E-value=6.3e-07 Score=89.00 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=90.1
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--cc--cccccccCCCCCC-CC-Cccce
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--GL--IGVMHDWCEPFDT-YP-RTYDL 585 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--Gl--ig~~~~~ce~~~~-yp-~tyDl 585 (666)
.+...+++++|++|||.|-|.+.|+.+.- .++.+|. +..++.+.+| ++ |.+.+.. ++. .| .+|||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-----~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~d---vp~~~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-----RLLAVDISPRALARARERLAGLPHVEWIQAD---VPEFWPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-----EEEEEES-HHHHHHHHHHTTT-SSEEEEES----TTT---SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-----ceEEEeCCHHHHHHHHHhcCCCCCeEEEECc---CCCCCCCCCeeE
Confidence 36889999999999999999999999843 4455552 4677777776 33 3333322 222 24 99999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------HHHHHHHHHHhcCcEEEEEeccCCCCCceE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------VMDELQEIGKAMGWHVTLRETAEGPHASYR 655 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~ 655 (666)
||++.++-.+.+.-++..++..+...|+|||.+|+-+-.+ -.+.|.+++...-=++.-..-..+ ...|.
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~-~~~~~ 188 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGG-SPNED 188 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-S-STTSE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCC-CCCCc
Confidence 9999999888876667789999999999999999953322 146677776666556544433222 23455
Q ss_pred EEEE
Q 005981 656 ILTA 659 (666)
Q Consensus 656 ~l~~ 659 (666)
-|++
T Consensus 189 ~~~~ 192 (201)
T PF05401_consen 189 CLLA 192 (201)
T ss_dssp EEEE
T ss_pred eEee
Confidence 5544
No 161
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.45 E-value=2.8e-06 Score=88.39 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=75.2
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
....+++.+...+... ....+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+. .+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~~---~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARPR---SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhccc---CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeec
Confidence 3445556655544321 12358999999999998887643 7999999999988776543 33342 2333343
Q ss_pred cC-CCC-CCCCeeEEEecccccccc---------------------cC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RR-LPY-PSQAFDLIHCSRCRINWT---------------------RD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~-Lpf-~d~sFDlVv~s~~l~h~~---------------------~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+ ++- ..++||+|+++--.+... .+ ...++..+.++|+|||.+++...
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 221 135799999875332110 01 12667778899999999999853
No 162
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.45 E-value=1.1e-06 Score=94.36 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=71.6
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~ 331 (666)
....+.+.+. + .+..+|||||||+|.++..+++. .|+++|+++.++..++.. +...+... .+...|...
T Consensus 68 l~a~ll~~L~-i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWVG-L---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhcC-C---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhh
Confidence 3445555543 1 34478999999999999888753 499999999988777643 34445443 333445444
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....+.||+|++.....+ ....+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 4444468999997643222 2345678999999998863
No 163
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.45 E-value=1.8e-07 Score=96.71 Aligned_cols=95 Identities=8% Similarity=0.171 Sum_probs=69.9
Q ss_pred eeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDli 586 (666)
..|||+|||+|..+.+|++. ++ .|+.+|. +.+++.+.++ |+ +.++....+ .+| ..||+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v 129 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC-----KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR---DIAIENASMV 129 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC-----eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh---hCCCCCCCEE
Confidence 35999999999999888762 33 5777774 6888888765 23 444444433 333 469999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.+..++.+... .....++.||.|+|||||.+++.|.
T Consensus 130 v~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 130 VLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99877776643 2346899999999999999999874
No 164
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.45 E-value=3.8e-07 Score=101.81 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE--EeecccCCCC--CCCCeeEEEe-
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC- 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~d~e~Lpf--~d~sFDlVv~- 344 (666)
++.+|||+|||+|..+..++.. +|+++|+++.++..++.+. +..|+...+ ...+....++ +.++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~-~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENL-KRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4479999999999888776643 8999999999998776444 445655322 2233333333 4678999995
Q ss_pred ---ccc-ccccccC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 ---SRC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 ---s~~-l~h~~~d----------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. .++-.++ ...+|.++.++|||||.++++|.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 221 1111122 24789999999999999999974
No 165
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.44 E-value=2.5e-07 Score=93.52 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=70.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
..|||+|||.|.+..+|++.+..+ .++.+|. +.++..+.++.- +..+..-.+..+..+.+||+|.+..++.+..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 569999999999999999885321 2455553 466666666532 3334444444444458999999998887654
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+...+|.++.|+|||||++++..
T Consensus 113 ---~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 ---DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799999999999999999974
No 166
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.43 E-value=6e-07 Score=93.95 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEecc-
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR- 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~- 346 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+. +..++.. .+...|...++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4578999999999888776542 7999999999988776544 3445543 334445555554456799999521
Q ss_pred ---c-cc--------cccc--------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 ---C-RI--------NWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ---~-l~--------h~~~--------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. .+ .|.. ....+|.++.++|||||+++++|-
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 00 1111 112588999999999999999974
No 167
>PRK04457 spermidine synthase; Provisional
Probab=98.43 E-value=1.2e-06 Score=91.54 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~ 331 (666)
.|.+.+...+... ..+++|||||||+|.++..++.. +|+++|+++.++..++..+..... ....+...|...
T Consensus 52 ~y~~~m~~~l~~~---~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLFN---PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 3455554433211 34578999999999999877654 899999999988776644332111 122334344321
Q ss_pred -CCCCCCCeeEEEecccc-ccccc--ChHHHHHHHHHhccCCeEEEEE
Q 005981 332 -LPYPSQAFDLIHCSRCR-INWTR--DDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 -Lpf~d~sFDlVv~s~~l-~h~~~--d~~~~L~el~RvLkPGG~lv~s 375 (666)
+.-..++||+|++...- ..... ....+++++.++|+|||.+++.
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 22223689999974311 11111 1258999999999999999986
No 168
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=4.6e-07 Score=101.36 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC----CCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp----f~d~sFDlVv 343 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++.+ +...|+.. .+...|...++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4578999999999888777643 799999999999877654 44456543 34444555554 4457899999
Q ss_pred ec----cc-ccccccC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 344 CS----RC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 344 ~s----~~-l~h~~~d----------------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. .. .++-.++ ...+|.++.++|||||+++.+|-
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 52 11 1111111 24779999999999999999974
No 169
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.6e-06 Score=88.15 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=71.7
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
+|||+|||+|..+..++.. +|+|+|+|+..+..|+ +.+...++........ +-+.--.+.||+|+|+--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~-dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQS-DLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEee-ecccccCCceeEEEeCCCCCCCc
Confidence 7999999999999888865 8999999999887776 4566666533222221 11111124899999875433321
Q ss_pred -----c-----Ch--------------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 005981 353 -----R-----DD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (666)
Q Consensus 353 -----~-----d~--------------~~~L~el~RvLkPGG~lv~st~P~~~~~~el~ 387 (666)
+ ++ ..++.++.+.|+|||.+++-. .+.....+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~ 247 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVK 247 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHH
Confidence 0 11 156778899999999998874 444444333
No 170
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.41 E-value=3.4e-06 Score=88.53 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeecc-cCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~-e~Lpf~d~sFDlVv~ 344 (666)
.+++||+||||+|.++..+.+. +++++|+++.++..++..+....+ ....+...|. +-+....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999988877654 799999999888777654433221 1112222232 112222478999997
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
... .+.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 543 223222 2478899999999999999874
No 171
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.41 E-value=7.9e-07 Score=94.22 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCC-CCccceEEeccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTY-PRTYDLLHAAGLFS 593 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~y-p~tyDliha~~~f~ 593 (666)
.+|||+|||+|.++.++++.|. -.|+.+|. +.+++.+.++ |+-......+...... +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 4699999999999999988864 15666663 4666666554 3211111111112222 47999999974321
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEec
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
.+..++.++.|+|||||+++++.-. +....+.+.+++. |++....+
T Consensus 237 ------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 237 ------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred ------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 2457899999999999999998653 3456677777776 87665443
No 172
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=1e-06 Score=98.94 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchhHHHhcc-----CCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEe---
Q 005981 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHC--- 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~--- 344 (666)
++.+|||+|||+|..+..+++ ..|+++|+++.++..++. .+...|+.. .+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 347899999999987766653 279999999999987764 444556543 34444555554 4578999994
Q ss_pred -ccccc-------ccccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 -SRCRI-------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 -s~~l~-------h~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.... .|..+ ...+|.++.++|||||.++++|-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22111 12111 12589999999999999999974
No 173
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=7e-07 Score=99.78 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv~s~ 346 (666)
++.+|||+|||+|..+.+++.. +|+++|+++.++..++.+ +...|+.. .+...|...++ +..++||.|++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 4478999999999877666542 899999999999877644 44556543 34445555555 4467899999621
Q ss_pred cc---cccc--c----------------ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CR---INWT--R----------------DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l---~h~~--~----------------d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.. -.+. + ....+|.++.+.|||||.++++|-
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 1111 1 113668899999999999999974
No 174
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.39 E-value=1.2e-06 Score=88.71 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=73.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCC-------CC-CCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD-------TY-PRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~-------~y-p~tyDliha~~~f 592 (666)
.|||+|||+|+++.+|+++..+ .-.|+.+|-..+.+. .|+ -+++.-.+... .+ +.+||+|.|+...
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 6999999999999999886210 013444443222211 233 23333333322 13 3789999997543
Q ss_pred ccCCCCC--------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhc--CcEE-EEE-eccCCCCCceEEEEEE
Q 005981 593 SVESKRC--------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM--GWHV-TLR-ETAEGPHASYRILTAD 660 (666)
Q Consensus 593 ~~~~~~c--------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l--~W~~-~~~-~~~~~~~~~e~~l~~~ 660 (666)
....... ..+.+|.|+.|+|||||.|++..-.. +.+++++..+ +|+. .+. +...-....|..+||.
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 3322211 12578999999999999999963221 1112222222 3332 222 2222235679999997
Q ss_pred e
Q 005981 661 K 661 (666)
Q Consensus 661 k 661 (666)
.
T Consensus 206 ~ 206 (209)
T PRK11188 206 G 206 (209)
T ss_pred c
Confidence 4
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.39 E-value=2.7e-07 Score=96.74 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
.+|||+|||.|.+++.|++....+-..+|+.+| ++.++..+.++.- +.+.....+.++.-+.+||+|.+. |.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~--~~---- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI--YA---- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe--cC----
Confidence 469999999999999998752111112577788 4789998877743 444433333444223899999975 22
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+..+.|+.|+|||||++++....
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCC
Confidence 23468999999999999997543
No 176
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=89.90 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=78.1
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEE------EEeeccC-CCCChhHHHhcc----c-----cccccccCCCCCCCC-C
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWV------MNVVPVS-GFNTLPVIYDRG----L-----IGVMHDWCEPFDTYP-R 581 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwv------mnv~~~~-~~~~l~~~~erG----l-----ig~~~~~ce~~~~yp-~ 581 (666)
--++|||+||+|-.|..+.+. |-. -+|+-.| ++.||.++.+|. | .-..-...|.++ || .
T Consensus 101 ~m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~ 176 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD 176 (296)
T ss_pred CCeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence 367999999999999888876 111 3455555 478997777665 4 223334567788 77 9
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChhHH-HHHHHHHHhc
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAM 637 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~-~~~~~i~~~l 637 (666)
+||+...+.-+- +--+++.+|.|+.|||||||.|.+=+=..+- +.|+.+.+.-
T Consensus 177 s~D~yTiafGIR---N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 177 SFDAYTIAFGIR---NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred cceeEEEeccee---cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 999998773333 3345689999999999999999987644443 4555555443
No 177
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.38 E-value=3e-07 Score=93.64 Aligned_cols=92 Identities=18% Similarity=0.340 Sum_probs=74.5
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-ccccccc----CCCCCCCC-CccceEEecccccc
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDW----CEPFDTYP-RTYDLLHAAGLFSV 594 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~----ce~~~~yp-~tyDliha~~~f~~ 594 (666)
|||+|||-|.++..|+..|+ +|+.+|. +.++++|..+.+ -|+.-++ -|.+. -. .+||+|-|..++.|
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred EEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 99999999999999999998 8999995 789999987766 3333232 11111 12 59999999999999
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..+. +.+|.+..+.|||||.++++.
T Consensus 137 v~dp---~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 VPDP---ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEec
Confidence 8765 689999999999999999984
No 178
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.38 E-value=4.7e-07 Score=94.69 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
+|||+|||.|..+..+++. |.+ ..|+.+|. +.+++.+.++ |+ +.+.+.--|.++.-+++||+|++..++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~~---~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGPT---GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCC---CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 6999999999876655543 321 14666663 5778777664 33 223333334333223799999999887
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+..+ ...++.|+.|+|||||++++.|
T Consensus 157 ~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 157 NLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 76543 4789999999999999999975
No 179
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.36 E-value=8e-07 Score=89.56 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
...++||.|+|.|..+..|+-. .|..+|..+..+..|+..+.........+....++++..+.++||+|++..|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4578999999999999877654 8888999988887776443332222223333346776655689999999999999
Q ss_pred cccC-hHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRD-DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d-~~~~L~el~RvLkPGG~lv~st 376 (666)
+.++ .-.+|+++...|+|||.+++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 9533 3499999999999999999985
No 180
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.35 E-value=1.1e-07 Score=84.43 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=65.6
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc----c-cccccccCCCCCCCCCccceEEeccc-ccc
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDTYPRTYDLLHAAGL-FSV 594 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG----l-ig~~~~~ce~~~~yp~tyDliha~~~-f~~ 594 (666)
|||+|||.|....+|++..-.---..++.+| ++.++..+.++. + +..++.-++.++....+||+|-|.+. |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998762000013677777 478998888877 3 44555555544433379999999666 666
Q ss_pred CCCCCCHHHHHHHhhhcccCCe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGG 616 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG 616 (666)
.. .-.++.++.++-|+|||||
T Consensus 81 ~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SS-HHHHHHHHHHHHHTEEEEE
T ss_pred CC-HHHHHHHHHHHHHHhCCCC
Confidence 44 3467899999999999998
No 181
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.35 E-value=1.7e-06 Score=87.62 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecc
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~ 329 (666)
......+++.+. + +++.+|||||||+|.+++.|+.. .|+++|..+.....|+..+... +.. ..+...|.
T Consensus 58 P~~~a~~l~~L~-l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~-~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD-L---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL-GIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT-C----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH-TTHSEEEEES-G
T ss_pred HHHHHHHHHHHh-c---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh-ccCceeEEEcch
Confidence 345666677765 2 45689999999999888877743 5899999998777776555443 443 33444442
Q ss_pred -cCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 330 -RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 330 -e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..++ ....||.|++....... -..+.+.||+||.+++--
T Consensus 133 ~~g~~-~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTG-GG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEE
Confidence 3332 34689999987653222 244677899999998863
No 182
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.5e-06 Score=87.12 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=68.3
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CC--CCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP--YPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lp--f~d~sFDlVv~s~~ 347 (666)
..+||||||.|.+...++.. +++|+|+...-+..+..+ +.+.++.+ .+...++.. +. ++++++|.|+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~-~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRK-AEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHH-HHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHH-HHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999998888754 899999999888777644 44446655 344444443 22 56799999985543
Q ss_pred ccccccC--------hHHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d--------~~~~L~el~RvLkPGG~lv~st 376 (666)
-.|... ...++..+.++|+|||.+.+.|
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 555321 1378999999999999999997
No 183
>PRK06922 hypothetical protein; Provisional
Probab=98.34 E-value=5e-07 Score=103.81 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=71.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCC-C-CCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDT-Y-PRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~-y-p~tyDliha~~~ 591 (666)
.+|||+|||+|.++.+|++..- ..+|+.+|. +.+++.+.++ |. +.+.+.-+..++. + |++||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P---~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE---DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3699999999999998887511 126777773 5778777665 22 3334444555543 3 489999999876
Q ss_pred cccCC----------CCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 592 FSVES----------KRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 592 f~~~~----------~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+.++- +..++..+|.|+.|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 64321 123467999999999999999999874
No 184
>PLN02366 spermidine synthase
Probab=98.32 E-value=5.4e-06 Score=88.71 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc-CC---CceEEeecccC-CC-CCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GA---PAMVAAFATRR-LP-YPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r-g~---~~~~~~~d~e~-Lp-f~d~sFDlV 342 (666)
..+++||+||||.|.+++.+++. +|+.+|+++.++..++..+.... +. ...+...|... +. .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35689999999999999988865 68899999988876665443321 11 12333334211 11 235689999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
++-.. .++... ...+++.+.++|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 96432 333221 1368899999999999997754
No 185
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.31 E-value=1.2e-06 Score=87.31 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=78.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCC--CCC-CccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFD--TYP-RTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~--~yp-~tyDliha~ 589 (666)
..|||+|||.|.++.+|+.+.-+ .||+.+|. ..++..+.+ .|+ +-+.+.-.+.+. .+| .++|.|++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~---~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD---KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46999999999999999987211 26777764 556655543 344 344444433222 245 599999876
Q ss_pred ccc-----ccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcC-cEEE
Q 005981 590 GLF-----SVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMG-WHVT 642 (666)
Q Consensus 590 ~~f-----~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~-W~~~ 642 (666)
.-- .|...|...+.+|.++.|+|||||.+++. |..+..+.+.+.+.... |+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 211 12234555578999999999999999986 66666666666555443 5543
No 186
>PRK04266 fibrillarin; Provisional
Probab=98.31 E-value=7.1e-06 Score=84.09 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=80.3
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH----HHhc-cccccccccCCCC--CCCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV----IYDR-GLIGVMHDWCEPF--DTYPR 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~----~~er-Glig~~~~~ce~~--~~yp~ 581 (666)
+.+++..+. .|||+|||+|++..+|++.- + --.|..+|. +.+++. +.++ ++..+..|-.++. ...+.
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v-~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIV-E--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhc-C--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 346776664 49999999999999998861 0 013555553 445543 3333 3333333433221 11346
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE------eC----hhHHHHHHHHHHhcCcEEEEEeccCCCC
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DS----IDVMDELQEIGKAMGWHVTLRETAEGPH 651 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------d~----~~~~~~~~~i~~~l~W~~~~~~~~~~~~ 651 (666)
+||+|-+.. . +.-....+|.|+.|+|||||+++|+ |. ....+...+.++.-..+.....+ -++.
T Consensus 141 ~~D~i~~d~--~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~-l~p~ 214 (226)
T PRK04266 141 KVDVIYQDV--A---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD-LEPY 214 (226)
T ss_pred cCCEEEECC--C---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc-CCCC
Confidence 799987541 1 1101134688999999999999993 32 22223344666666666543322 2332
Q ss_pred -CceEEEEEEeC
Q 005981 652 -ASYRILTADKR 662 (666)
Q Consensus 652 -~~e~~l~~~k~ 662 (666)
..+-.++++|+
T Consensus 215 ~~~h~~~v~~~~ 226 (226)
T PRK04266 215 HKDHAAVVARKK 226 (226)
T ss_pred cCCeEEEEEEcC
Confidence 34666777663
No 187
>PRK06202 hypothetical protein; Provisional
Probab=98.31 E-value=1.5e-06 Score=88.90 Aligned_cols=99 Identities=11% Similarity=0.184 Sum_probs=71.2
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccC-CCCChhHHHhccc---cccccccCCCCCCCCCccceEEec
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~-~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
+-..|||+|||+|.++..|++ .|. ..+|+.+| ++.+++.+.++.- +.+...-++.++.-+.+||+|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGL---RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCC---CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 445799999999999888874 232 23688888 4789998887632 222333344455435899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.+|.|..+. .+..+|.||.|+|| |.++|.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999887653 34689999999999 5555554
No 188
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.30 E-value=1.7e-05 Score=78.34 Aligned_cols=97 Identities=18% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEe-ec-ccCCCCCCCCeeEEEecc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FA-TRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~-~d-~e~Lpf~d~sFDlVv~s~ 346 (666)
.++.+++|||||||+.+..++.. +|+++|-++..+...+. .+.+.+..+.... .+ -+.|+-. .+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~-N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER-NAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH-HHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECC
Confidence 45689999999999999888721 99999999887766653 4444566654333 22 2333322 2799999765
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ...+.+|..+...|||||.+++..
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5 566899999999999999999985
No 189
>PHA03411 putative methyltransferase; Provisional
Probab=98.30 E-value=2.3e-06 Score=89.54 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.+ +|+++|+++.++..++.. .....+...|+..+. .+++||+|+++..+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 368999999999988777542 899999999887655432 112334445555554 3468999999877666
Q ss_pred cccC-------------------hHHHHHHHHHhccCCeEEEEE
Q 005981 351 WTRD-------------------DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 351 ~~~d-------------------~~~~L~el~RvLkPGG~lv~s 375 (666)
.... ....+..+.++|+|+|.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 4211 135667778899999976654
No 190
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.29 E-value=2.9e-06 Score=84.94 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=67.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc----cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL----IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl----ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.+|||+|||.|.++.++++..-+ .-+++.+|. +..+..+.++.- +.+.+.-.+..+.-+.+||+|++..++.+
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 46999999999999999887321 014555553 456666666531 33333333333322378999999877655
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.. +...++.++.++|||||++++.+
T Consensus 119 ~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 VT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 45799999999999999999864
No 191
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.29 E-value=2.8e-06 Score=84.09 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=73.6
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCC------CCCC-CccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPF------DTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~------~~yp-~tyDliha~~~f~ 593 (666)
+|||+|||+|+++.+++++... .-.|+.+|...+.. ..++--+..+..+.. ..++ .+||+|-++....
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~--~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGG--KGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCC--CceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 6999999999999888776211 00244444322221 123321223433211 0133 6899999864321
Q ss_pred c--------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEEecc-CCCCCceEEEEEEe
Q 005981 594 V--------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILTADK 661 (666)
Q Consensus 594 ~--------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~~~~-~~~~~~e~~l~~~k 661 (666)
. ....+.++.+|.++.|+|||||.+++. ...+.+.++-..++..=|.+.+...- ......|+++||..
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 1 111123468999999999999999994 22222222222222222556555332 22356799999963
No 192
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.28 E-value=3.8e-06 Score=94.26 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC--
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-- 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~-- 331 (666)
...+.+.+.+.. .+..+|||+|||+|.++..|+.. .|+|+|+++.++..++. .+...++. ..+...|+..
T Consensus 284 ~l~~~vl~~l~~----~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 284 KMVARALEWLDP----QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHhcC----CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 345555555431 34478999999999999998875 89999999999988874 44445543 3344444432
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 332 --LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 332 --Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++.+++||+|++.-.... ....+..+.+ ++|++.++++..
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 3355678999997543221 2345555555 699999999964
No 193
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.27 E-value=2.8e-06 Score=85.16 Aligned_cols=114 Identities=17% Similarity=0.278 Sum_probs=70.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCc----eEEeec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA----MVAAFA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~----~~~~~d 328 (666)
.+++.|.+.++. ...+|||||||||..+.+++.+ ...-.|..+..+..- .....+.+..+ ......
T Consensus 13 pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI-~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSI-RAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhH-HHHHHhcCCcccCCCeEeecC
Confidence 455556665552 2226999999999888887765 333445554332111 12333444332 222111
Q ss_pred ccCCCC------CCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPY------PSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf------~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
....+. ..++||+|+|.++ +|+.+- .+.+|+.+.++|++||.|++.++
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 222333 2468999999988 666543 34899999999999999999964
No 194
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.26 E-value=6.5e-06 Score=83.35 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=66.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
..|||+|||.|.++..+++.+-. .-.|+.+|. +.+++.+.++- + +.+.+.-.+.++.-+.+||+|++..+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK--TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 35999999999999999887400 124555663 46666665541 2 33444333333322379999999866
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+. .+...+|.++.++|+|||.+++.+
T Consensus 131 l~~~---~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNV---PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence 6443 456899999999999999999853
No 195
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.25 E-value=4.4e-06 Score=93.78 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC--CCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp--f~d~sFDlVv~s 345 (666)
++.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...|+.. .+...|...+. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 3478999999999988777652 79999999998877764 444456543 33444554442 33 789999964
Q ss_pred ccccc-----------cccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRIN-----------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h-----------~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.-... |... ...+|.++.++|||||.+++++.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 21110 1111 12578999999999999999874
No 196
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=2.1e-06 Score=89.95 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=82.4
Q ss_pred hhhhhhhHhHHHHHHHHHHh-cc-cCCCceeeEeeccccchH----HHHHHhhCCCc--eEEEEeeccC-CCCChhHHHh
Q 005981 492 ELFKAESKYWNEIIESYVRA-LH-WKKMKLRNVLDMRAGFGG----FAAALIEQKFD--CWVMNVVPVS-GFNTLPVIYD 562 (666)
Q Consensus 492 ~~f~~d~~~w~~~v~~Y~~~-l~-~~~~~iRnvlD~g~G~Gg----faa~L~~~~~~--vwvmnv~~~~-~~~~l~~~~e 562 (666)
-.|-.|...|....+..... +. ...++--.|+|+|||+|- .|..|++.+.. -|...|+.+| ++.+|+.|.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 34555666666544433221 11 112233579999999995 66666664211 1345788888 4688887754
Q ss_pred cccc----------------------------------cc-ccccCCCCCCC-CCccceEEeccccccCCCCCCHHHHHH
Q 005981 563 RGLI----------------------------------GV-MHDWCEPFDTY-PRTYDLLHAAGLFSVESKRCNMSTIML 606 (666)
Q Consensus 563 rGli----------------------------------g~-~~~~ce~~~~y-p~tyDliha~~~f~~~~~~c~~~~~l~ 606 (666)
|+. .. .||-.+. .+ ++.||+|.|..+|.+..+ -....++.
T Consensus 151 -~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 151 -GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred -CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 321 11 2344332 13 389999999988887653 23468999
Q ss_pred HhhhcccCCeEEEEEeChh
Q 005981 607 EMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 607 E~dRiLRPgG~~ii~d~~~ 625 (666)
++.|+|+|||++++-+...
T Consensus 227 ~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 227 RFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHhCCCeEEEEECccc
Confidence 9999999999999975544
No 197
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=8.4e-06 Score=81.94 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=72.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeec-ccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFA-TRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d-~e~Lp 333 (666)
....+.+.+.- .++.+|||||||+|..++.|++. +|+++|..+.....|+.++. ..|..+ .+...| ...++
T Consensus 60 ~vA~m~~~L~~----~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLEL----KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCC----CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCC
Confidence 45556666652 45689999999999999988876 99999999876666654443 345533 333333 34443
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+...||.|+...+.-.. + ..+.+.||+||.+++-.
T Consensus 135 -~~aPyD~I~Vtaaa~~v---P----~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 -EEAPYDRIIVTAAAPEV---P----EALLDQLKPGGRLVIPV 169 (209)
T ss_pred -CCCCcCEEEEeeccCCC---C----HHHHHhcccCCEEEEEE
Confidence 34789999977653333 2 34567899999998863
No 198
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.22 E-value=4.1e-06 Score=85.75 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCC-C--CCCCCeeEEEeccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRL-P--YPSQAFDLIHCSRC 347 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~L-p--f~d~sFDlVv~s~~ 347 (666)
..+||||||.|.+...++.+ +++||++...-+..+. +.+.+.++ +..+...|+..+ . +++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999876 8999999988777665 56667788 555555553332 2 45669999996544
Q ss_pred ccccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 348 l~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
-.|.... ..+++.+.++|+|||.+.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6664321 378999999999999999997
No 199
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.21 E-value=1.7e-06 Score=88.21 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=67.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCC-CCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFD-TYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~-~yp~tyDliha~~~f~ 593 (666)
.|||+|||.|.++..|.+.++ +|+.+|. +..+..+.++ ++ +.+.+.--+.++ ..+.+||+|.+..++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA-----DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC-----eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 499999999999999998876 5666663 4566666554 33 222222112222 1237999999998888
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+..+ ...+|.++.|+|+|||.+++.+
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 7664 4689999999999999999975
No 200
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.20 E-value=2.1e-06 Score=86.52 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=69.4
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccC-CCCChhHHHhccc-cccccccCCCCCCCC-CccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~~~~ce~~~~yp-~tyDliha~~~f~~ 594 (666)
..|||+|||+|.+..+|++. +. +++.+| ++.+++.+.++.- +.+.+.-... .++ ++||+|.|.+++.|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~-----~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFK-----HIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhh
Confidence 45999999999999999886 44 577777 4688888877522 3344332222 344 89999999999998
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.. .-.+..+|.||.|++ +++++|.+
T Consensus 118 l~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 IN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 75 345689999999998 57888864
No 201
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.19 E-value=5.7e-06 Score=74.91 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=63.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCCCCc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~yp~t 582 (666)
.+.+..+. .|||+|||.|.++.+++++.-. .+|+.+|. +.+++.+.+ .|+ +.+...-.+. ....+.+
T Consensus 14 ~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 14 KLRLRPGD--VLWDIGAGSGSITIEAARLVPN---GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC---ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 34444443 7999999999999999886211 25666663 455555432 233 2222221111 1222468
Q ss_pred cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 583 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 583 yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
||.|.+..... .+..++.++.|+|+|||++++.
T Consensus 89 ~D~v~~~~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 99998864221 3468999999999999999985
No 202
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.19 E-value=9.3e-06 Score=81.15 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=85.4
Q ss_pred hhHhHHHHHHHHH-HhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc---c
Q 005981 497 ESKYWNEIIESYV-RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL---I 566 (666)
Q Consensus 497 d~~~w~~~v~~Y~-~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl---i 566 (666)
+...+++.+..-. ..+++..+. .|||+|||.|.++.+++.. +. ..+|+.+|. +.+++.+.++ |+ +
T Consensus 20 ~~~~t~~~~r~~~l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 20 EIPMTKEEIRALALSKLRLRKGD--MILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCCCCHHHHHHHHHHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCe
Confidence 3346665554221 233444443 5999999999999887653 11 115666664 4566655433 43 2
Q ss_pred cccc-ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE
Q 005981 567 GVMH-DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 567 g~~~-~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
.+.. +..+....++..||+|.+.+ ....+..++.++.|+|||||.+++. -..+.+.++...++.+.++..+.
T Consensus 95 ~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 95 VLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 2332 22222223346899998752 1235679999999999999999983 34566788888888888765443
No 203
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.19 E-value=8.5e-06 Score=84.98 Aligned_cols=135 Identities=23% Similarity=0.351 Sum_probs=84.7
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc---cc---cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR---GL---IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er---Gl---ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++..- ...|+.+|. +.+++.+.++ +. +.+. .|+.+.+. +.+||+|.++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~---~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP---DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 3599999999999999988731 125666663 5666666554 22 3333 33422222 379999998532
Q ss_pred cccCC-------C-------------C---CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccC
Q 005981 592 FSVES-------K-------------R---CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 648 (666)
Q Consensus 592 f~~~~-------~-------------~---c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~ 648 (666)
+.... . . -.+..++.++.++|+|||++++--.......++.+++...+.......+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d- 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD- 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-
Confidence 21100 0 0 0134788889999999999999755555667888888777753222111
Q ss_pred CCCCceEEEEEEe
Q 005981 649 GPHASYRILTADK 661 (666)
Q Consensus 649 ~~~~~e~~l~~~k 661 (666)
..+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 235788888765
No 204
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.2e-05 Score=80.71 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.++.+|||.|.|+|.++.+|+.. +|+++|+-+.....|+.++... ++.. .+...|+.+.-++ +.||+|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~-~~vDav~-- 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDE-EDVDAVF-- 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEeccccccccc-cccCEEE--
Confidence 45689999999999999999842 8999999998887777665543 4433 3333454444444 4899998
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +++..++..+.++|+|||.+++-.+
T Consensus 169 ---LDm-p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 169 ---LDL-PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ---EcC-CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 344 7888999999999999999998854
No 205
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.18 E-value=4.1e-06 Score=86.01 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
..++|||||+|+|.++..++++ +++..|+ |..+..+ .+ .-...+...|.. -+++. +|+++..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~-----~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQA-----KE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCH-----HH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcc-----cc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 4578999999999999888865 7888887 3333322 22 222344455554 45554 99999999999
Q ss_pred ccccCh-HHHHHHHHHhccCC--eEEEEEEC
Q 005981 350 NWTRDD-GILLLEVNRMLRAG--GYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~-~~~L~el~RvLkPG--G~lv~st~ 377 (666)
+|.++. ..+|+++++.|+|| |.+++...
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 995433 38999999999999 99999864
No 206
>PTZ00146 fibrillarin; Provisional
Probab=98.18 E-value=1.3e-05 Score=84.80 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=67.7
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCC---CCcc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTY---PRTY 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~y---p~ty 583 (666)
++++.+. +|||+|||.|++..+|++. | .|+.+.+.+....+++.++.+| +++.+..|-+++. .| ..++
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~v 203 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMV 203 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCC
Confidence 4466664 5999999999999999987 3 2555444432223466777665 6666666665432 12 2689
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|.++-. ..+ ....+++|+.|+|||||+|+|.
T Consensus 204 DvV~~Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 99988742 111 2235677999999999999994
No 207
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.18 E-value=1.5e-05 Score=80.19 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=74.4
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHh-ccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEee
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYL-LPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAF 327 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L-~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~ 327 (666)
+...+...+.+++.+... ....+|||+|||+|.++..+ ... +|+++|.++..+..++.+ ++..++. ..+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N-l~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN-LATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEEEc
Confidence 456666666666666422 23368999999999999754 332 899999999887766543 3334443 233344
Q ss_pred cccC-CCCCCCCeeEEEecccccccccChHHHHHHHHH--hccCCeEEEEEEC
Q 005981 328 ATRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (666)
Q Consensus 328 d~e~-Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~R--vLkPGG~lv~st~ 377 (666)
|... ++...++||+|++.--. .. .-...++..+.. +|+|+|.+++...
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy-~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPF-RK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCC-CC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 4332 32234579999976542 11 112345555544 4799999988853
No 208
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.18 E-value=7.1e-06 Score=88.02 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCCC-CCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lpf-~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.. +|+|+|+++.++..++. .++..++. ..+...|+..+.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-- 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR-- 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC--
Confidence 478999999999999999876 89999999999988764 45555654 3445555554432 23579999976331
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
......+.++...++|++.++++..
T Consensus 251 --~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 251 --RGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred --CCccHHHHHHHHHcCCCeEEEEECC
Confidence 1122333344455788999988864
No 209
>PRK01581 speE spermidine synthase; Validated
Probab=98.18 E-value=8.3e-06 Score=88.45 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHH--HHH-Hc----CCCceEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FAL-ER----GAPAMVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~--~a~-~r----g~~~~~~~~d~e~-Lpf~d~sFD 340 (666)
..+++||+||||+|..++.+.+. +|+++|+++.++..|+.. +.. .+ .....+...|... +.-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45679999999999888877764 799999999888766531 110 01 1122333334222 333457899
Q ss_pred EEEeccccccccc---C--hHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~---d--~~~~L~el~RvLkPGG~lv~st 376 (666)
+|++... ..... . ...+++.+.+.|+|||.+++..
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9996532 22110 0 1368899999999999998874
No 210
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.16 E-value=5e-06 Score=84.72 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcC---CC---------ceEEeecccCCCCCC-C
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG---AP---------AMVAAFATRRLPYPS-Q 337 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg---~~---------~~~~~~d~e~Lpf~d-~ 337 (666)
....+||+.|||.|.-...|+++ +|+|+|+|+..+..+..+...... .. ..+...|.-.++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 34468999999999999999988 999999999877554322211000 11 123344555554332 5
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 338 AFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
+||+|+=..+++-+.++. ..+.+.+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 799999766666554444 48999999999999995444
No 211
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.16 E-value=7.7e-06 Score=89.67 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=75.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCC----hhHHHhccc--cccccccCCC-CCCCC-CccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNT----LPVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~----l~~~~erGl--ig~~~~~ce~-~~~yp-~tyDliha~~~ 591 (666)
.+||+|||.|.|..+|+.+.-+ .|++.+|- ..+ +.-+.++|+ +-+++.-.+. +..+| .++|.|++.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~---~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln-- 199 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN---KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH-- 199 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC---CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--
Confidence 5999999999999999987201 15666663 333 344455676 4444333222 22344 899999976
Q ss_pred ccc-CC----CCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhc-CcEEE
Q 005981 592 FSV-ES----KRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHVT 642 (666)
Q Consensus 592 f~~-~~----~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l-~W~~~ 642 (666)
|.. +. .|=..+..|.|+.|+|+|||.+.|+ |..+..+.+.+.+... +++..
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~ 257 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIE 257 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceee
Confidence 332 11 1112368999999999999999994 8777766666655544 55543
No 212
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.16 E-value=2.6e-05 Score=86.27 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccCC----CCCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL----PYPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~L----pf~d~sFDlVv~ 344 (666)
+.+|||+|||+|.++...+.. +|+++|+++.++..++.+ +...++. ..+...|+... ....++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N-~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 478999999999988664432 899999999999887654 4445543 23444443322 112468999998
Q ss_pred cccccccc--------cChHHHHHHHHHhccCCeEEEEEEC
Q 005981 345 SRCRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 345 s~~l~h~~--------~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.--...-. .+...++..+.++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 64422111 1123455667899999999988653
No 213
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.16 E-value=3e-06 Score=86.06 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=74.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhH-HHhcccccc--------------ccccCCCCCCCC----
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV-IYDRGLIGV--------------MHDWCEPFDTYP---- 580 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~-~~erGlig~--------------~~~~ce~~~~yp---- 580 (666)
..|||+|||.|-.|.+|+++|++|+.+-++|. .++. +.++|+-.. +.-.|-.+..++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~----Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI----AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH----HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 36999999999999999999995555555443 3333 233444110 011222222222
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---e-Chh--------HHHHHHHHHHhcCcEEEEEec
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---D-SID--------VMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d-~~~--------~~~~~~~i~~~l~W~~~~~~~ 646 (666)
.+||+|....+|.+.. ....+.++..|.|+|||||++++- . ... ..++|.+++. -+|++...+.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 4799999887777664 334468999999999999975442 1 111 1345555554 2688766543
No 214
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=1.3e-05 Score=91.66 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=68.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHH--HHHHc--C---CCceEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER--G---APAMVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~--~a~~r--g---~~~~~~~~d~e~-Lpf~d~sFD 340 (666)
+++++|||||||+|..+..+.++ +|+++|+++.+++.++.. +..-. . ....+...|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35679999999999999887754 799999999988766541 11111 1 112233334332 222347899
Q ss_pred EEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|++... .+..+.. ..+++.+.+.|||||.+++...
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9997633 3332211 3688999999999999998753
No 215
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.15 E-value=4.8e-06 Score=84.84 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=75.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhH-HHhcccccc--------------ccccCCCCCCC---C-
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPV-IYDRGLIGV--------------MHDWCEPFDTY---P- 580 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~-~~erGlig~--------------~~~~ce~~~~y---p- 580 (666)
.|||.|||.|--|.+|+++|+ +|+.+|- +..++. +.++|+-.. .+-++..+..+ +
T Consensus 40 rvL~~gCG~G~da~~LA~~G~-----~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH-----EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC-----eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 699999999999999999999 5666662 344443 346666211 11122223222 2
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE-E-----eCh------hHHHHHHHHHHhcCcEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-R-----DSI------DVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii-~-----d~~------~~~~~~~~i~~~l~W~~~~~~ 645 (666)
.+||+|....+|.+.. ...-..++..|.++|||||++++ + +.. -..++|.+++.. +|++....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 5899999888877764 23346899999999999996444 2 111 124555555542 28876554
No 216
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.15 E-value=2.3e-06 Score=86.41 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=67.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++..|++.+.. ++.+|. +.++..+.++ |+ +...+...+.++. .+.+||+|++.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46999999999999999888753 445553 4555555443 33 2223333222222 2479999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
+.+.. +...+|.++.++|+|||.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 87765 44789999999999999999975
No 217
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.15 E-value=8.5e-06 Score=82.48 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-------ccccc
Q 005981 499 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-------IGVMH 570 (666)
Q Consensus 499 ~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-------ig~~~ 570 (666)
..|.+.+-.|... +. .+-..|||+|||.|.++.+|++.+. .|+.+| ++.++..+.++.- +...+
T Consensus 39 ~~~~~~~~~~l~~-~~--~~~~~vLDiGcG~G~~~~~la~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~ 110 (219)
T TIGR02021 39 AAMRRKLLDWLPK-DP--LKGKRVLDAGCGTGLLSIELAKRGA-----IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110 (219)
T ss_pred HHHHHHHHHHHhc-CC--CCCCEEEEEeCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 3444445444432 11 2335799999999999999998865 466676 3678888777632 23333
Q ss_pred ccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh------------------------H
Q 005981 571 DWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------------------V 626 (666)
Q Consensus 571 ~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~------------------------~ 626 (666)
.-. ...+.+||+|-+..++.+... .++..++.++.|++++++++.+..... .
T Consensus 111 ~d~---~~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
T TIGR02021 111 NDL---LSLCGEFDIVVCMDVLIHYPA-SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHP 186 (219)
T ss_pred CCh---hhCCCCcCEEEEhhHHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEec
Confidence 332 233489999999888876543 356789999999999998888753221 1
Q ss_pred HHHHHHHHHhcCcEEEEE
Q 005981 627 MDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 627 ~~~~~~i~~~l~W~~~~~ 644 (666)
.+.++++++...|++...
T Consensus 187 ~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 187 MTDLERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHHHHcCceeeee
Confidence 345666777777776544
No 218
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.14 E-value=8.8e-06 Score=83.44 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=78.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++..-. .+|+.+|. +.+++.+.+ .|+ +.+.+.-+ +..++ .+||+|.|+--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCC
Confidence 36999999999999999986111 15566663 455555543 344 33443332 22343 78999998644
Q ss_pred cccCC------CCC-----------------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEE
Q 005981 592 FSVES------KRC-----------------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 592 f~~~~------~~c-----------------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~ 642 (666)
|.... ..+ .+..++.++.|+|+|||++++.........++++++..+|+..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 33211 000 0236788999999999999998776677888899888888643
No 219
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.13 E-value=6.4e-06 Score=87.51 Aligned_cols=127 Identities=22% Similarity=0.296 Sum_probs=79.6
Q ss_pred eEeeccccchHHHHHHhhCCCc-eEEEEeeccCCCCChhHHHhccc---cccccccCCCCCCCCCccceEEeccccccCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.|||+|||+|-.|-+-++.|+. |...-+-|..-.++.+-+...|+ +.+ + ..+.... ..||+|-|+=+...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~--~~~dlvvANI~~~v-- 237 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVE--GKFDLVVANILADV-- 237 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCC--S-EEEEEEES-HHH--
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eeccccc--ccCCEEEECCCHHH--
Confidence 7999999999988888888763 33333333222334444444566 222 1 2222222 89999999832221
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
+..++-++.+.|+|||++|++-=. +..+.|.+.++. .|++.....++ ....|+++|+
T Consensus 238 ----L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ----LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ----HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 235666788999999999999533 345677777777 89887666544 4788888885
No 220
>PHA03412 putative methyltransferase; Provisional
Probab=98.12 E-value=8.7e-06 Score=83.48 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchhHHHhcc-------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
..+|||+|||+|.++..++. .+|+++|+++.++..++... ....+...|+...++ +++||+|+++--
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence 36899999999998886653 27999999998776665322 123344455555444 468999998765
Q ss_pred ccccc-cC----------hHHHHHHHHHhccCCeE
Q 005981 348 RINWT-RD----------DGILLLEVNRMLRAGGY 371 (666)
Q Consensus 348 l~h~~-~d----------~~~~L~el~RvLkPGG~ 371 (666)
+.... .+ ...++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 44221 11 12578888887787776
No 221
>PRK14967 putative methyltransferase; Provisional
Probab=98.12 E-value=9.8e-06 Score=82.51 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
.|||+|||.|.++..|++.+. -+|+.+|. +.++..+.+ .|+ +-+. .|+.+.+. +..||+|.++--|.
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~----~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~ 112 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGA----GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYV 112 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCC
Confidence 599999999999999988754 14555553 455655444 344 3233 34433221 27999999974332
Q ss_pred cCCC------------------CCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCcEEEE
Q 005981 594 VESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 594 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W~~~~ 643 (666)
.... .+.++.++.++.|+|||||.+++-.. ......+.+++++-.|++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 1110 11246788899999999999998422 22344555555665665544
No 222
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.10 E-value=5.7e-06 Score=83.73 Aligned_cols=100 Identities=22% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--ccccc-ccCCCCCCC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMH-DWCEPFDTY 579 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~-~~ce~~~~y 579 (666)
..+.+.+..+. .|||+|||+|.+++.|++..-. .-.|+.+|. +.+++.+.+ .|+ +.+.+ |..+....
T Consensus 69 ~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~--~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~- 143 (215)
T TIGR00080 69 MTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGR--DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP- 143 (215)
T ss_pred HHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-
Confidence 34445555553 5999999999999999887211 002555553 455555543 354 33443 32222211
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
...||+|++... ...+..++-+.|+|||++|+.
T Consensus 144 ~~~fD~Ii~~~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCC---------cccccHHHHHhcCcCcEEEEE
Confidence 268999998732 235566788999999999985
No 223
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=4.6e-06 Score=82.92 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhc--c----cCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccc------c
Q 005981 501 WNEIIESYVRAL--H----WKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL------I 566 (666)
Q Consensus 501 w~~~v~~Y~~~l--~----~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGl------i 566 (666)
.++.+++|++.+ + +....--.||.+|||+|..--++-.. ++ .|+-+| +++|-+++..+-- +
T Consensus 53 yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~-----svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 53 YNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPIN-----SVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCc-----eEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 346666676532 1 11111224799999999876666544 54 455556 3677766654322 3
Q ss_pred c-cccccCCCCCCCC-CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----H-HHHHHHHHHh
Q 005981 567 G-VMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----V-MDELQEIGKA 636 (666)
Q Consensus 567 g-~~~~~ce~~~~yp-~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----~-~~~~~~i~~~ 636 (666)
. ..|.--|.++..+ .+||.|.|.-++..-. +...+|.|+.|+|||||.+|+-+... . ..-++..+++
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC---CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 3 6677888888666 9999999886654333 33699999999999999999965432 2 3334445555
No 224
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.08 E-value=1.8e-05 Score=81.50 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=65.4
Q ss_pred CCeEEEECCCCchhHHHhcc----C-CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC-CC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~----~-~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~-Lp-----f~d~sFDl 341 (666)
.++|||+|||+|..+..++. . +|+++|+++..+..++..++ +.++.. .+...++.+ ++ .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~-~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK-KAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 47999999999975554442 2 89999999988877765444 445432 233333322 22 12468999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|++..- .+....++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985321 1233578899999999999998763
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.07 E-value=1.1e-05 Score=95.37 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CCCCCCCeeEEEeccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lpf~d~sFDlVv~s~~ 347 (666)
+++|||+|||+|.++..++.. +|+++|+|+.++..++.+.. ..++. ..+...|+.+ +.-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 378999999999999988865 69999999999988875544 44543 2344444322 1111468999998533
Q ss_pred cccc----------ccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RINW----------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h~----------~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+.- ..+...++..+.++|+|||.+++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2211 12234678888999999999988863
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.05 E-value=7.3e-06 Score=82.20 Aligned_cols=102 Identities=24% Similarity=0.408 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCc----hhHHHhcc------C---CeEEEeCCcchHHHHHHHH------------HHHc------C-C-
Q 005981 274 HIRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQF------------ALER------G-A- 320 (666)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~------~---~V~gvDiS~~~l~~a~~~~------------a~~r------g-~- 320 (666)
..-+|+..||++| +++..|.+ . +|+|+|+++..+..|+.-. ..++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 55555544 1 8999999999887775310 0011 0 0
Q ss_pred --------CceEEeecccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 321 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 321 --------~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
...+...+..+.+...+.||+|+|-++++.+..+. ..++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01222333333223457899999999999885443 38999999999999999987
No 227
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.04 E-value=1.8e-05 Score=86.02 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccccccccccCCCCCCCCCccceEEeccccccC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGlig~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
.|||+|||+|.++.+|+++.-. ..|+.+|. ..++..+.+ .|+-+.++ +...+...+..||+|.|+-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~---~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK---IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 4999999999999999987311 13555553 355544432 34422111 122233345899999999777543
Q ss_pred CC--CCCHHHHHHHhhhcccCCeEEEEEeC--hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEeC
Q 005981 596 SK--RCNMSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 596 ~~--~c~~~~~l~E~dRiLRPgG~~ii~d~--~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.. ....+.++.++.|.|||||.++|--+ ...-..+++..... ++...+ .+.||+-++|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la~~------~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLAQT------GRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEEeC------CCEEEEEEEcc
Confidence 21 12346899999999999999988643 22344455544332 333322 25788888773
No 228
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.04 E-value=1.1e-05 Score=81.08 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCC-C
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCE-P 575 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce-~ 575 (666)
..+.+.+..+ ..|||+|||+|.+++.|++. +. .|+.+|. +.++..+.+ .|+ +.+.+.-.+ .
T Consensus 64 ~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g-----~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 64 MCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRG-----KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 3444555444 35999999999999888764 12 3555553 345544433 354 344443322 2
Q ss_pred CCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 576 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 576 ~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
++ -..+||+|++...+. .+..|+-|+|+|||.+++..
T Consensus 137 ~~-~~~~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LE-KHAPFDAIIVTAAAS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Cc-cCCCccEEEEccCcc---------hhhHHHHHhcCcCcEEEEEE
Confidence 22 137999999985432 34457889999999999963
No 229
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.3e-05 Score=81.85 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=85.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc---cc-cccccCCCCCCCC--CccceEEecc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IG-VMHDWCEPFDTYP--RTYDLLHAAG 590 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl---ig-~~~~~ce~~~~yp--~tyDliha~~ 590 (666)
+-++|||+|||.|-+|-|.++.|+. -|+.+|. +..++++.|.-. +. ..+.-+=.....+ +.||+|-|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4578999999999999999999872 3666664 566666666422 11 1111111122234 5999999981
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+-. -+..+.-++.|.|||||++|++-=. +..+.+.+.+.+-.|++..+...+ ...-++.+|
T Consensus 238 -LA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~----eW~~i~~kr 299 (300)
T COG2264 238 -LAE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLERE----EWVAIVGKR 299 (300)
T ss_pred -hHH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecC----CEEEEEEEc
Confidence 110 1235666778999999999999643 346778888888899987766543 244555554
No 230
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.04 E-value=4.6e-05 Score=67.55 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=67.6
Q ss_pred EEEECCCCch--hHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccC--CCCCC-CCeeEEEeccccc
Q 005981 278 VMDAGCGVAS--FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 349 (666)
Q Consensus 278 VLDIGCGtG~--~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~--Lpf~d-~sFDlVv~s~~l~ 349 (666)
+||+|||+|. +...+... .++++|+++.++..+...... .+.. ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 9999999998 44444442 688899999877663322222 2222 2233334343 77776 489999 666666
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6644 78999999999999999999864
No 231
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.03 E-value=1.9e-05 Score=88.27 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC----CCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~----Lpf~d~sFDlVv~s~ 346 (666)
...+|||+|||+|.++..+++. +|+|+|+++.++..++.+ +...++.. .+...|+.. +++.+++||+|++.-
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n-~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQN-AELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHH-HHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 3468999999999999999875 899999999999877754 44445533 344445432 234456899999653
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.... -...++..+.+ |+|++.++++.
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 3111 12455665554 89999888874
No 232
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.03 E-value=2.7e-05 Score=82.33 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=88.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccc-cccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVM-HDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~-~~~ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||.|.++.+|++..-+ .+|+.+|. +.++.++.++ |+ +-++ .|+++.+. ...||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~---~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN---AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECC
Confidence 36999999999999999986211 25666663 5667666653 43 3334 56655442 14899999851
Q ss_pred -------------ccccCCCCC---------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHH-hcCcE-EEEEec
Q 005981 591 -------------LFSVESKRC---------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK-AMGWH-VTLRET 646 (666)
Q Consensus 591 -------------~f~~~~~~c---------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~-~l~W~-~~~~~~ 646 (666)
++.+....+ .+..++.++.++|+|||++++--.......+++++. ...|. +..+..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 111111111 245789999999999999999876667777888776 46775 333322
Q ss_pred cCCCCCceEEEEEEeC
Q 005981 647 AEGPHASYRILTADKR 662 (666)
Q Consensus 647 ~~~~~~~e~~l~~~k~ 662 (666)
-.+.++++++++.
T Consensus 271 ---~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 ---LNGKERVVLGFYH 283 (284)
T ss_pred ---CCCCceEEEEEec
Confidence 2356888888753
No 233
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=1.1e-05 Score=82.64 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHH--cCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE--RGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~--rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
...+|||+|||+|.|+..+++. +|+|+|+++.|++....+.++. .+..+.. ..+.+.++..-..+|+++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCceeeeEEEeehH-
Confidence 4578999999999999999876 7999999998776532221110 0111111 1111222222246787775533
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
..|..+.+.|++ |.+++--
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEc
Confidence 247889999999 8776653
No 234
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.02 E-value=6e-06 Score=82.12 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=61.7
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccC-CCCChhHHHhccccccccccCCCCCCCC-CccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~-~~~~l~~~~erGlig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~ 597 (666)
+|||+|||.|.+..+|++. ++ +++.+| ++.++..+.++|+--+..+..+.+..++ ++||+|.|.++|.+..+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~-----~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV-----RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC-----cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5999999999999999865 33 344555 3567778877775212223222233354 89999999999888765
Q ss_pred CCCHHHHHHHhhhcccCC
Q 005981 598 RCNMSTIMLEMDRMLRPG 615 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPg 615 (666)
...+|.||.|+++++
T Consensus 91 ---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 ---PEEILDEMLRVGRHA 105 (194)
T ss_pred ---HHHHHHHHHHhCCeE
Confidence 478899998887754
No 235
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.02 E-value=8.5e-06 Score=86.85 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=66.2
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHH----Hhccc---cccccccCCCCCCCCCccceEEecc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI----YDRGL---IGVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~----~erGl---ig~~~~~ce~~~~yp~tyDliha~~ 590 (666)
..+.|||+|||.|.++.+++++.=+ .+++.+|.+.+++.+ .+.|+ |.+.+..... ..+|. +|+|.+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~---~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPE---LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-ESYPE-ADAVLFCR 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCC---CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-CCCCC-CCEEEeEh
Confidence 4568999999999999999887201 134444544555544 34465 4444333211 13454 79998887
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
++.++.+. ....+|.++.|.|||||.++|-|.
T Consensus 224 ~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77655432 235799999999999999999753
No 236
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=81.80 Aligned_cols=101 Identities=18% Similarity=0.367 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHH----HcCCC------------------------
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP------------------------ 321 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~----~rg~~------------------------ 321 (666)
.+..+|||||-.|.++..+++. .|+|+||++..++.|..+.-. +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999998888765 899999999888777543211 00000
Q ss_pred -------------ceEEeecccCCCCCCCCeeEEEecccc----cccccC-hHHHHHHHHHhccCCeEEEEE
Q 005981 322 -------------AMVAAFATRRLPYPSQAFDLIHCSRCR----INWTRD-DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 -------------~~~~~~d~e~Lpf~d~sFDlVv~s~~l----~h~~~d-~~~~L~el~RvLkPGG~lv~s 375 (666)
+.+.. ..+-|.+....||+|.|.... +.|.++ +..+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle-~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLE-SDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEe-cchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 001122345689999985432 233222 348999999999999999886
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.01 E-value=6.1e-05 Score=78.90 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=99.0
Q ss_pred CCCCCCcCCCCccccccCCCCCccccccccc-CcchhccccccccCCCCccccccHHHH----HHHHHhhcccccCCCCC
Q 005981 201 GYKTPIPWPRSRNEVWYNNVPHSRLVEDKGG-QNWISKEKDKFKFPGGGTQFIHGADQY----LDQIAKMVPDITWGHHI 275 (666)
Q Consensus 201 ~Y~~P~~wP~s~~~~W~~n~~~~~L~~~k~~-q~W~~~~g~~~~Fpgggt~F~~g~~~~----i~~L~~~L~~i~~g~~~ 275 (666)
+++..|..-.+.|++ |.|.|.....-.+-. ++|...-| | .|.++. .+.|.+.+..+...+..
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiG--W----------rGIR~Rk~~l~~~i~~ai~~L~~~g~p 136 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIG--W----------RGIRQRKVHLEELIRQAIARLREQGRP 136 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccc--h----------HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 667777778888998 667665433221111 11111111 0 122221 22222222222223456
Q ss_pred CeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCCCce--EEeecc---cCCCCCCCCeeEEEe
Q 005981 276 RVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFAT---RRLPYPSQAFDLIHC 344 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~~d~---e~Lpf~d~sFDlVv~ 344 (666)
-+||||.||.|......... +|.-.|+++..+...+ +.++++|+... +...|+ +.+.--+-..++++.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 78999999999654433322 7888999998887776 56778887653 333332 222212345799998
Q ss_pred cccccccccCh---HHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 345 SRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 345 s~~l~h~~~d~---~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+....-+ +|- ...|..+.++|.|||+++.+..|-...
T Consensus 216 sGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 216 SGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred ecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 8765555 552 367899999999999999997654333
No 238
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.01 E-value=1.3e-05 Score=78.24 Aligned_cols=118 Identities=23% Similarity=0.349 Sum_probs=71.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccc-cccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||+|-.+.+|++++.+. .|+.+|. +..++.+.+ .++ +.++ +|+.+.+. +..||+|-|+-=
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~---~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDA---KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCE---EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CeEEEecCChHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 359999999999999999985431 2444452 455554433 333 3333 56655444 499999999854
Q ss_pred cccCCC--CCCHHHHHHHhhhcccCCeEEEE--EeChhHHHHHHHHHHhcCcEEEEEec
Q 005981 592 FSVESK--RCNMSTIMLEMDRMLRPGGHVYI--RDSIDVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 592 f~~~~~--~c~~~~~l~E~dRiLRPgG~~ii--~d~~~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
|....+ ...+..++.+.-++|+|||.+++ +........++++.. ++.+...
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~~ 162 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVAK 162 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEEE
Confidence 433221 12356889999999999998855 444444444555444 5554443
No 239
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.00 E-value=8.9e-06 Score=86.11 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CeEEEECCCCc----hhHHHhcc-------C-CeEEEeCCcchHHHHHHHHH---HHcCCC-------------------
Q 005981 276 RVVMDAGCGVA----SFGAYLLP-------R-NVITMSIAPKDVHENQIQFA---LERGAP------------------- 321 (666)
Q Consensus 276 ~~VLDIGCGtG----~~a~~L~~-------~-~V~gvDiS~~~l~~a~~~~a---~~rg~~------------------- 321 (666)
-+|+..||.|| +++..|.+ . +|+|+|++...+..|+.-.- .-++++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 45554433 1 79999999999887764210 000100
Q ss_pred ---------ceEEeecccCCCCC-CCCeeEEEecccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 005981 322 ---------AMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 322 ---------~~~~~~d~e~Lpf~-d~sFDlVv~s~~l~h~~~d-~~~~L~el~RvLkPGG~lv~s 375 (666)
..+...+....+++ .+.||+|+|-++++|+..+ ...++.++.+.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01222233332332 5789999999998888543 348999999999999999877
No 240
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.7e-05 Score=81.32 Aligned_cols=154 Identities=20% Similarity=0.297 Sum_probs=98.4
Q ss_pred hhhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHh----ccc---c
Q 005981 495 KAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---I 566 (666)
Q Consensus 495 ~~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~e----rGl---i 566 (666)
+.|++.+.+.+. ..+..... +|||||||+|-.|.+|+....+ .+|+.+| ++..+.+|.+ .|+ +
T Consensus 93 r~dTe~Lve~~l---~~~~~~~~---~ilDlGTGSG~iai~la~~~~~---~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 93 RPDTELLVEAAL---ALLLQLDK---RILDLGTGSGAIAIALAKEGPD---AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred CCchHHHHHHHH---HhhhhcCC---cEEEecCChHHHHHHHHhhCcC---CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 456666666554 22222211 7999999999999999998532 4677777 4566655533 354 2
Q ss_pred ccccccCCCCCCCCCccceEEecccccc-------------------CCCCC---CHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSV-------------------ESKRC---NMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 567 g~~~~~ce~~~~yp~tyDliha~~~f~~-------------------~~~~c---~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
-+..+| |...+.+||+|-|+==+-- ..... -+..++.+..++|+|||++++.-..
T Consensus 164 ~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 233466 5555569999987521110 00111 1348889999999999999999888
Q ss_pred hHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 625 DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 625 ~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
...+.+++++....+ .........-.+.+++.++++
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 889999999999995 221112222335677777665
No 241
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.99 E-value=5.2e-06 Score=85.42 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=74.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc------------cccccccCCCCCCCCCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL------------IGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl------------ig~~~~~ce~~~~yp~tyDli 586 (666)
++|||+|||.|-...-|+..|+ +|+.+|. ..++++|.+.-- +...|.--|.+- ..||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 5699999999999999999998 8888985 688888877511 223344444444 359999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
.|+.++.|..+. ..++.-+-+.|||||.++|++-
T Consensus 163 vcsevleHV~dp---~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 163 VCSEVLEHVKDP---QEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eeHHHHHHHhCH---HHHHHHHHHHhCCCCceEeeeh
Confidence 999999987764 6899999999999999999843
No 242
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.98 E-value=7.6e-06 Score=83.23 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=76.6
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcccc-------ccccccCCCCCCCCCccceEEecc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLI-------GVMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGli-------g~~~~~ce~~~~yp~tyDliha~~ 590 (666)
-|.++|+|||.|--+..+++.-. +|+.+| ++.||+++.+.=-+ .+--+--+.+..=+++.|||-|.-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k-----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK-----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh-----hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 45799999999944444455533 889998 47999988654332 222222233333379999999884
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCe-EEEE---EeChhHHHHHHHHHHhcCcE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGG-HVYI---RDSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG-~~ii---~d~~~~~~~~~~i~~~l~W~ 640 (666)
.|. -|+++..+.++.||||+.| .+.+ +|+.-..-+...+..+++|+
T Consensus 109 a~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 AVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 443 5899999999999999988 3322 45554556666666677765
No 243
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=6.4e-05 Score=77.81 Aligned_cols=132 Identities=15% Similarity=0.240 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEee---
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--- 327 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--- 327 (666)
.+...+.+.+.+....+ .....+||+|||+|..+..++.. .|+++|.|+..+.-|. +.++..++...+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~-~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~ 207 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH-SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNI 207 (328)
T ss_pred HHHHHHHHHHHHhhhhh-cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecc
Confidence 34556666666654322 23357999999999887777654 8999999998876654 344444333322211
Q ss_pred ---c-ccCCCCCCCCeeEEEecccccccccCh--------------------------HHHHHHHHHhccCCeEEEEEEC
Q 005981 328 ---A-TRRLPYPSQAFDLIHCSRCRINWTRDD--------------------------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 328 ---d-~e~Lpf~d~sFDlVv~s~~l~h~~~d~--------------------------~~~L~el~RvLkPGG~lv~st~ 377 (666)
+ ....+...+.+|+++|+--.+.- +|. ..++.-+.|.|+|||.+.+...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccccccCceeEEecCCCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 33444567899999987543322 110 1344556799999999999853
Q ss_pred CCCCCHHHHHHHH
Q 005981 378 PVYKHEEAQEEHW 390 (666)
Q Consensus 378 P~~~~~~el~~~w 390 (666)
.......+...|
T Consensus 287 -~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 287 -ERKEHSYLVRIW 298 (328)
T ss_pred -ccccCcHHHHHH
Confidence 223334455555
No 244
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.97 E-value=8.2e-05 Score=74.72 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=68.5
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
-.|-|||||-+..|+++.+ ++.|.-..+++... . |........|.-+.+.|++-+.- |.. ..
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~----------~---Vtacdia~vPL~~~svDv~VfcL--SLM--GT 135 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNP----------R---VTACDIANVPLEDESVDVAVFCL--SLM--GT 135 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEEESS-SST----------T---EEES-TTS-S--TT-EEEEEEES-------SS
T ss_pred EEEEECCCchHHHHHhccc-CceEEEeeccCCCC----------C---EEEecCccCcCCCCceeEEEEEh--hhh--CC
Confidence 3599999999999988753 33344444444321 1 11111112232238999887652 222 24
Q ss_pred CHHHHHHHhhhcccCCeEEEEEeChhH---HHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii~d~~~~---~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
++.+.|.|..|||||||.++|.+-... .+...+.+++++.+....|..+. --.++..+|
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~---~F~~f~F~K 197 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNK---HFVLFEFKK 197 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--ST---TEEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCC---eEEEEEEEE
Confidence 678999999999999999999876554 45555678999999998876543 334444444
No 245
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.96 E-value=4e-05 Score=84.72 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=88.0
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cc-cccc-cccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
+|||+|||+|.++.+|+.. +. +|+.+|. +.+++.+.++ |+ +.+. .|+.+....-...||+|.|+-=
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a-----~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA-----FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 6999999999999998864 33 5666663 5777766553 43 3344 3443331111257999999542
Q ss_pred cccCC---------------------CCC-CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEeccCC
Q 005981 592 FSVES---------------------KRC-NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 592 f~~~~---------------------~~c-~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+.... +.. -+..++.+..+.|+|||++++--..+..+.++++++...|+......+
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD-- 406 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD-- 406 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--
Confidence 21100 000 133777788899999999999766677889999999888865332222
Q ss_pred CCCceEEEEEEeC
Q 005981 650 PHASYRILTADKR 662 (666)
Q Consensus 650 ~~~~e~~l~~~k~ 662 (666)
-.+.++++++++.
T Consensus 407 l~G~dR~v~~~~~ 419 (423)
T PRK14966 407 LAGLDRVTLGKYM 419 (423)
T ss_pred CCCCcEEEEEEEh
Confidence 2346899988763
No 246
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.94 E-value=7e-06 Score=81.38 Aligned_cols=113 Identities=19% Similarity=0.355 Sum_probs=85.3
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCC-CccceEEeccccccCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 597 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp-~tyDliha~~~f~~~~~ 597 (666)
.|||+|||.|.+-++|.+. ++ .+..++- +..+..+.+||+-=+.+|.-+.+..|| .+||.|-.+..+.+..+
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v-----~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQV-----DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCC-----eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 4999999999999999985 55 3334442 466888899999635567766788898 99999999877776654
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEE------------------------------eChh----HHHHHHHHHHhcCcEEEE
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIR------------------------------DSID----VMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~------------------------------d~~~----~~~~~~~i~~~l~W~~~~ 643 (666)
. +.+|.||=|| |...|++ |+.. .+...+.+.+.+..++.-
T Consensus 91 P---~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 91 P---DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred H---HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 3 6899999665 7788886 3333 267788888888888754
Q ss_pred E
Q 005981 644 R 644 (666)
Q Consensus 644 ~ 644 (666)
.
T Consensus 165 ~ 165 (193)
T PF07021_consen 165 R 165 (193)
T ss_pred E
Confidence 4
No 247
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.94 E-value=1.6e-05 Score=81.75 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=72.0
Q ss_pred cCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHhccccccc-cccCCCCCCCCCccceEEecc
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~erGlig~~-~~~ce~~~~yp~tyDliha~~ 590 (666)
..+.+++.|+|+|+|.|.++++++++ ++.+.+ .|.+..++.+.+..-|... +|. |.++|. +|++...+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v-----~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATV-----FDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRH 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEE-----EE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEES
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCccee-----eccHhhhhccccccccccccccH---Hhhhcc-ccceeeeh
Confidence 45667889999999999999999887 443333 3444445555444344444 666 566778 99999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCC--eEEEEEeC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPG--GHVYIRDS 623 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPg--G~~ii~d~ 623 (666)
++..+.+. ....||..+.+.|+|| |.++|-|.
T Consensus 167 vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 167 VLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 99988753 3469999999999999 99999754
No 248
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.93 E-value=6.4e-05 Score=74.88 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=71.6
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTY 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~y 579 (666)
..+.+..+. .|||+|||+|.++..+++. +. .|+.+|. +.++..+.+ .|+ +.+.+.-++. +...
T Consensus 34 ~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~-----~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 34 SQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKG-----RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCC-----EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 444544443 5999999999999888754 23 4555663 456655543 344 3444333322 2222
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-hhHHHHHHHHHHhcCc
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGW 639 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-~~~~~~~~~i~~~l~W 639 (666)
...+|.++..+ ...++.++.++.|+|+|||++++... .+.+..+.+.++.+.+
T Consensus 107 ~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 107 APAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred CCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 23456665531 23568999999999999999999753 3445556666666543
No 249
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.92 E-value=3.6e-05 Score=80.12 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=82.4
Q ss_pred eeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhc----cccccc-cccCCCCCC-CCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVM-HDWCEPFDT-YPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~-~~~ce~~~~-yp~tyDliha~~ 590 (666)
.+|||+|||.|.++.+|++. +. +|+.+|. +.+++.+.++ |+ .++ .|+.+.+.. +...||+|-++=
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~-----~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI-----ELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECC
Confidence 36999999999999998865 33 4555663 4566555443 32 233 344333321 235799999874
Q ss_pred ccccCC-------------CCC----------CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEecc
Q 005981 591 LFSVES-------------KRC----------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 591 ~f~~~~-------------~~c----------~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
=+.... .++ -+..++..+.++|+|||++++--..+....+..+++..+|+..+..++
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcc
Confidence 322100 000 034788888899999999999766667788999999889988888776
Q ss_pred CC
Q 005981 648 EG 649 (666)
Q Consensus 648 ~~ 649 (666)
+-
T Consensus 242 ~~ 243 (251)
T TIGR03704 242 EL 243 (251)
T ss_pred cc
Confidence 53
No 250
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.92 E-value=1.3e-05 Score=68.10 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=63.0
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHH---hccc---cccccccCCCCCC-CCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIY---DRGL---IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~---erGl---ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
+|+|+|||.|++...+++. +. .+..+|. ++.+..+. +.+. +-+++...+.... -+..||+|.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA-----RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 4899999999999999883 33 4444543 33333333 1121 4444444333332 3478999999988
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+... .-....++..+.+.|||||++++.
T Consensus 76 ~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7762 123468999999999999999987
No 251
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.92 E-value=7.8e-05 Score=80.16 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhhcccc----cCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE-
Q 005981 254 GADQYLDQIAKMVPDI----TWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV- 324 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i----~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~- 324 (666)
+...|+..+.+++... ...+...+|||||||+|.+...|+.+ +++|+|+++..+..|+...+...++...+
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4556787777776431 11234578999999999766665543 89999999999988886555431443322
Q ss_pred -E-eecccCC----CCCCCCeeEEEeccccccc
Q 005981 325 -A-AFATRRL----PYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 325 -~-~~d~e~L----pf~d~sFDlVv~s~~l~h~ 351 (666)
. ..+...+ ..+.+.||+|+|+--++.-
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 1 1121111 1245789999998764443
No 252
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.91 E-value=3.8e-05 Score=84.42 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC-CCCCCeeEEEecccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp-f~d~sFDlVv~s~~l~h 350 (666)
..+|||+|||+|.++..++.. .|+|+|+++.++..++. .++..++. ..+...+++.+. -..++||+|++.--.-.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 368999999999999988866 89999999999877764 44445553 334444544322 11246999997644211
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-...++..+. .++|++.++++..
T Consensus 313 ---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 313 ---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1234555554 4799999999964
No 253
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.90 E-value=1.9e-05 Score=79.95 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc----cc---cccccccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~tyDliha~~~ 591 (666)
.+|||+|||.|.++.+|++.+. .|+.+| ++++++.+.++ |+ +...+.. +...+.+||+|.+..+
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 5799999999999999999876 356666 35777777664 22 2222222 3333489999999998
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+..+ ..+..++.++.|++++++.+.+.
T Consensus 137 l~~~~~-~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 137 LIHYPQ-EDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred hhcCCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence 877543 24678999999988766655543
No 254
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.90 E-value=4.1e-05 Score=82.63 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=77.2
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCc
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRT 582 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~t 582 (666)
+..+++.+. .|||.+||+|++...++..|. +|+.+|. +.++..+.++ |+ +.+.+.....++.-+.+
T Consensus 176 ~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 176 NLARVTEGD--RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHhCCCCcC--EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence 444555554 599999999999887777765 5666664 4555544332 44 33444443334332479
Q ss_pred cceEEeccccccC----CC--CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCc
Q 005981 583 YDLLHAAGLFSVE----SK--RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 639 (666)
Q Consensus 583 yDliha~~~f~~~----~~--~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W 639 (666)
||+|.++--|... .+ ......+|.|+.|+|||||++++--..+ ..++++++.-.|
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 9999997433321 11 1235789999999999999998864332 244566788888
No 255
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=2.7e-05 Score=78.90 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp 580 (666)
.+.+.+..+ ..|||+|||+|.+++.|++. +.+ -.|+.+|. +.+++.+.++ |+ +.+.+... +..++
T Consensus 69 ~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~---~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~--~~~~~ 141 (212)
T PRK13942 69 CELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKS---GKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG--TLGYE 141 (212)
T ss_pred HHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc--ccCCC
Confidence 344455555 36999999999999888765 210 03444442 4566555443 43 33444332 22232
Q ss_pred --CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
..||+|++... .+.+..++.+.|||||.+++-
T Consensus 142 ~~~~fD~I~~~~~---------~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAA---------GPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCC---------cccchHHHHHhhCCCcEEEEE
Confidence 78999998743 234556777899999999995
No 256
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.89 E-value=7.8e-05 Score=77.35 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCC---CCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYP---SQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~---d~sFDlV 342 (666)
.++.+|||.|.|+|+++..|+.. +|+..|+.+.....|+.++.. .|+.. .+...|+..-.|. ++.+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEE
Confidence 45689999999999999888753 899999999888888766554 45542 3444455433332 3689999
Q ss_pred EecccccccccChHHHHHHHHHhc-cCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvL-kPGG~lv~st~ 377 (666)
+ +.+ +++..++..+.++| |+||.+++-.+
T Consensus 118 f-----LDl-p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 118 F-----LDL-PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp E-----EES-SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred E-----EeC-CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 8 444 78889999999999 99999988764
No 257
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.88 E-value=3.8e-05 Score=82.45 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCCchhHHHh--ccCCeEEEeCCcchHHHHHHHHHHHcCCCce--EEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
.++..|||-=||||++.... ...+++|.|++..|+..+..++..- ++... ....|+..+|+++++||.|++-.-.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 45579999999999887554 3459999999999988877655443 33332 3333889999998899999973210
Q ss_pred -----cccc--cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 349 -----INWT--RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 349 -----~h~~--~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..-. ++ ...+|..+.++|++||++++.++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1110 11 24788999999999999999964
No 258
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=3.6e-05 Score=87.80 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=75.5
Q ss_pred CCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCC--CCCCCeeEEEe
Q 005981 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP--YPSQAFDLIHC 344 (666)
Q Consensus 272 g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lp--f~d~sFDlVv~ 344 (666)
+.....+||||||.|.+...++.. +++|+|+...-+..+.. .+.+.++.+. +...+++.+. ++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 345678999999999999888865 89999999877766654 4455566553 3333333222 67899999996
Q ss_pred cccccccccCh--------HHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d~--------~~~L~el~RvLkPGG~lv~st 376 (666)
+.. -.|.... ..++..+.++|||||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 544 6664221 378999999999999999986
No 259
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.85 E-value=3.6e-05 Score=82.34 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEee--cccCCCCCCCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+.++|||||||||.++..-++. +|++||.|... .. ..+.++.++....+... .++++.+|..+.|+|++-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~-a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DF-ARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HH-HHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4589999999999877666654 99999998643 33 33667777766544332 355555557899999975443
Q ss_pred cccc--cChHHHHHHHHHhccCCeEEE
Q 005981 349 INWT--RDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 349 ~h~~--~d~~~~L~el~RvLkPGG~lv 373 (666)
.... .-+..+|..=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3222 113466666789999999874
No 260
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.84 E-value=5e-05 Score=81.01 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=65.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc------cc-c-ccccccCCCCCCCCCcc-----ce
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-I-GVMHDWCEPFDTYPRTY-----DL 585 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er------Gl-i-g~~~~~ce~~~~yp~ty-----Dl 585 (666)
.+|||+|||+|.++..|++.... ..+|+++| ++.+|+.+.++ ++ + ++..|-++.+. ++..+ .+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 45999999999999999887210 13788888 47888888775 22 2 23334433322 33332 34
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+.+...|.+.. +-+...+|.++.+.|+|||.|+|.
T Consensus 142 ~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55555565544 334568999999999999999984
No 261
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.83 E-value=6.3e-05 Score=78.81 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=95.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc----C----------
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----G---------- 319 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r----g---------- 319 (666)
..+++.|.+..+.........+||--|||.|.++-.++.+ .+.|.|+|--|+-.. ++.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 3456666666653222345578999999999999999988 899999998886433 232221 0
Q ss_pred ---------------CC------------c-eEEeecccCCCCCC---CCeeEEEecccccccccChHHHHHHHHHhccC
Q 005981 320 ---------------AP------------A-MVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 320 ---------------~~------------~-~~~~~d~e~Lpf~d---~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP 368 (666)
++ . ....+|...+..++ ++||.|++. .++.-..+.-.+|..+.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhcc
Confidence 00 0 01111222222223 689999865 4466667778999999999999
Q ss_pred CeEEEEEECCCCCCHHH-------HHHHHHHHHHhhhhhhhhhhh
Q 005981 369 GGYFAWAAQPVYKHEEA-------QEEHWKEMLDLTTRLCWELVK 406 (666)
Q Consensus 369 GG~lv~st~P~~~~~~e-------l~~~w~~~~~l~~~l~W~~v~ 406 (666)
||+++=.++-.+..... ++-.|.++..+.+.++|+.+.
T Consensus 195 gG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 99887776544443332 444567777777777776655
No 262
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.81 E-value=4.4e-05 Score=80.83 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=76.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCC-CccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp-~tyDliha~~ 590 (666)
.+|||+|||+|.++.+|+++.-+ .+|+.+|. +.++..+.++ |+ +.+++..+ +...| .+||+|.++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~---~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE---AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECC
Confidence 46999999999999999986211 15666663 5666666553 54 44443332 22234 5899999861
Q ss_pred cc------c-------cCC--------CCC-CHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEe
Q 005981 591 LF------S-------VES--------KRC-NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 591 ~f------~-------~~~--------~~c-~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~ 645 (666)
=+ . +.. +.. .+..++.++.+.|+|||++++--..+. ..+++++....|.-...+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 11 1 000 000 125788999999999999998654433 688888887665544433
No 263
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=1.3e-05 Score=83.41 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCeEEEECCCCchhHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccccC
Q 005981 275 IRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d 354 (666)
...+||+|||.|-.+..-....++|.|++...+ ..++..+.. .+...|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~-----~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLL-----GGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhc-----cccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999543322222678888887543 233333332 35556788999999999999999888888644
Q ss_pred h--HHHHHHHHHhccCCeEEEEEE
Q 005981 355 D--GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 355 ~--~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+++++.|+|||||...+..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 3 389999999999999977764
No 264
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.80 E-value=6e-05 Score=78.65 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=60.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
.+++.+.+.+.. .+..+|||||||+|.++..++++ +|+++|+++.++..++..... .....+...|+..+++
T Consensus 16 ~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc
Confidence 456666666542 34578999999999999999876 899999999888766543322 1123345556667666
Q ss_pred CCCCeeEEEeccccccc
Q 005981 335 PSQAFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFDlVv~s~~l~h~ 351 (666)
+ .||.|+++.. +++
T Consensus 90 ~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 90 P--EFNKVVSNLP-YQI 103 (258)
T ss_pred h--hceEEEEcCC-ccc
Confidence 4 4899997654 444
No 265
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.79 E-value=4.7e-05 Score=80.10 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+.+.. ..+.+|||||||+|.++..|+++ +|+|+|+++.++..++.+... ....+...|+..+++
T Consensus 29 ~i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCH
Confidence 345666665542 34478999999999999999876 899999999988776543321 223455556777776
Q ss_pred CCCCeeEEEecc
Q 005981 335 PSQAFDLIHCSR 346 (666)
Q Consensus 335 ~d~sFDlVv~s~ 346 (666)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 542358888653
No 266
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=9.2e-05 Score=72.69 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=73.3
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCC---CceEEEEeeccCCCCChhHHHhcccc---ccccccCCCCCCCCCccceEE
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSGFNTLPVIYDRGLI---GVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~---~~vwvmnv~~~~~~~~l~~~~erGli---g~~~~~ce~~~~yp~tyDlih 587 (666)
++.++-.+|||+||+.|||..++++++ ..|+.+.+.+.+.......+ +|=+ .......+.+..-...+|+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455667889999999999999999996 33444444433211111111 1111 001111111111116899999
Q ss_pred eccccccCCCCC-----CHH---HHHHHhhhcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccCCCCCce
Q 005981 588 AAGLFSVESKRC-----NMS---TIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAEGPHASY 654 (666)
Q Consensus 588 a~~~f~~~~~~c-----~~~---~~l~E~dRiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e 654 (666)
|+..+...+++- .+. ..|.=+-+.|||||.+|+. +..+.+..++...+.+++- +-.-.++...|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~E 173 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESSE 173 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCBE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCccE
Confidence 998666544321 111 2233334779999999985 2235566666655554332 22223456789
Q ss_pred EEEEEEe
Q 005981 655 RILTADK 661 (666)
Q Consensus 655 ~~l~~~k 661 (666)
..|||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 9999875
No 267
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.79 E-value=8.2e-05 Score=79.73 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=71.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---ccccc-ccCCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~-~~ce~~~~yp~tyDliha~~ 590 (666)
.+|||+|||.|.++.+|+...- ..+|+.+|. +.++..+.++ |+ +.+++ |+.+.++ +.+||+|.|+-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 4699999999999999987621 125666763 5666665544 54 44443 3333232 26899999862
Q ss_pred cc-------------ccCCC--------C-CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcC
Q 005981 591 LF-------------SVESK--------R-CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMG 638 (666)
Q Consensus 591 ~f-------------~~~~~--------~-c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~ 638 (666)
=+ .+... . -.+..++.++.++|+|||++++--..+ ...+.+++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 11 11110 0 013578999999999999999953333 345777776544
No 268
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.78 E-value=0.00014 Score=74.07 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCce--EEe-ec-ccCCC-CCCCCeeEEE
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FA-TRRLP-YPSQAFDLIH 343 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~--~~~-~d-~e~Lp-f~d~sFDlVv 343 (666)
..++|||||.+.|.-+..|+.. +++++|+++.+...|+..+++ .|+... +.. .+ .+.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 3579999999999888877754 699999999998888765554 455442 222 12 22222 4568999998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. -+.-.+-..++..+.++|||||.+++..
T Consensus 138 I----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 I----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred E----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3 3333445689999999999999999874
No 269
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.76 E-value=8.5e-05 Score=74.87 Aligned_cols=95 Identities=23% Similarity=0.230 Sum_probs=62.1
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCC-
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYP- 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp- 580 (666)
...+.+..+ ..|||+|||+|.+++.|++... .|+.+|. +++++.+.++ |+ +.+.+.-. +..++
T Consensus 71 ~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~ 141 (212)
T PRK00312 71 TELLELKPG--DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPA 141 (212)
T ss_pred HHhcCCCCC--CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCc
Confidence 344444433 3599999999999998887742 3555553 4556555543 44 33443332 22333
Q ss_pred -CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 -~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
..||+|.+...+ ..+..++.+.|+|||.+++.
T Consensus 142 ~~~fD~I~~~~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 142 YAPFDRILVTAAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCcCEEEEccCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 789999987432 34566778999999999986
No 270
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.76 E-value=8.4e-05 Score=72.98 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC----CCceEEeecccC-C--C-CCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-L--P-YPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg----~~~~~~~~d~e~-L--p-f~d~sFD 340 (666)
..+.+|||+|||+|..+..++.. +|+..|..+ .+...+ ..++.++ ....+...+-.+ . . ...+.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 35589999999999665555433 899999987 444333 3333332 111222222111 1 0 2346899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+|+++.+++.- ...+.++.-+.++|+++|.++++..
T Consensus 122 ~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999985543 5667889999999999999877753
No 271
>PLN02672 methionine S-methyltransferase
Probab=97.75 E-value=0.00017 Score=88.09 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC-----------------CceEEeecccCCC
Q 005981 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-----------------PAMVAAFATRRLP 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~-----------------~~~~~~~d~e~Lp 333 (666)
+.+|||+|||+|.++..++.. +|+|+|+++.++..|+.+... .++ ...+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhh-
Confidence 358999999999998888754 799999999999888755443 211 123333343221
Q ss_pred CCC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHHhccCCeEEEE
Q 005981 334 YPS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 334 f~d--~sFDlVv~s~~l~h~~---------------------------------~d~----~~~L~el~RvLkPGG~lv~ 374 (666)
+.+ ..||+|+|+--.+.-. .|. ..++.++.++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999864322100 110 3667788899999999988
Q ss_pred EE
Q 005981 375 AA 376 (666)
Q Consensus 375 st 376 (666)
-.
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 74
No 272
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.74 E-value=0.00012 Score=82.33 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcccccCCC----CCCeEEEECCCCchhHHHhcc--------CCeEEEeCCcchHHHHHHHHHHHcCC--
Q 005981 255 ADQYLDQIAKMVPDITWGH----HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA-- 320 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~----~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiS~~~l~~a~~~~a~~rg~-- 320 (666)
++.|-+.|.+.+.+..... ....|||||||+|.+....++ .+|++|+-++......+ +..+..+.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 3455556655555433222 246899999999977643321 28999999986654443 23234443
Q ss_pred CceEEeecccCCCCCCCCeeEEEeccccccccc--ChHHHHHHHHHhccCCeEEE
Q 005981 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 321 ~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~--d~~~~L~el~RvLkPGG~lv 373 (666)
...+...+++++..+ ...|+|++-.+ -.+.. -....|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 334555678888765 58999996433 22322 23477888999999999864
No 273
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.73 E-value=0.00021 Score=73.89 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=87.5
Q ss_pred eeeEeeccccchHHHHHHhhC-C-CceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCCCC-C-CccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFDTY-P-RTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~-~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~~y-p-~tyDli 586 (666)
...|||+|||.|..+-.|+++ . + -|+.|+- +.+.+.|.+ .++ |.++|+.-+.+... + .+||+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a-----~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKA-----KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCC-----cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 677999999999999999988 3 3 3444442 233333322 233 77776664443332 2 569999
Q ss_pred Eecccccc---------------CCCCCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 587 HAAGLFSV---------------ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 587 ha~~~f~~---------------~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
-|+==|-. ..-.|++++++.=.-++|||||++.+=-..+.+..+-+++++++|....
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 99754422 2234788899999999999999999999999999999999999999753
No 274
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.72 E-value=4.8e-05 Score=80.36 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=80.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC--CCChhHHHhcccccccc------ccCCCCCCCCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGLIGVMH------DWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~--~~~l~~~~erGlig~~~------~~ce~~~~yp~tyDliha~~~ 591 (666)
|.|||+|||-|.+.-.|+.+|.. .|+.+|. .-.+++-+-+-++|.-. .--|.++. .++||+|-|.||
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~----~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAK----SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCC----EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 46999999999999999999862 4555553 23445555444443211 11233444 589999999999
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEE------eC------------h------hHHHHHHHHHHhcCcEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DS------------I------DVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------d~------------~------~~~~~~~~i~~~l~W~~ 641 (666)
+=|..+ --+.|.++...|||||.+|+- |. + -....|+..+++..++-
T Consensus 192 LYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 192 LYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 888554 479999999999999999974 11 0 02677888888888874
No 275
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00027 Score=74.70 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CC---ceEEeec-
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-AP---AMVAAFA- 328 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~---~~~~~~d- 328 (666)
+-.+++.+++...++ ..++||-||.|.|..++.+.+. +++.||+.+..+..++..+..-.+ .. ..+...|
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 445555666654444 3479999999999999999876 899999999766554433222111 11 1222223
Q ss_pred ccCCCCCCCCeeEEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTR----DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~----d~~~~L~el~RvLkPGG~lv~st~P~~~~~~el~~~w~~~ 393 (666)
.+-+.-...+||+|++-.. -...+ ....+++.++|.|+++|.++..+...+....++...+..+
T Consensus 140 ~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~ 207 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNV 207 (282)
T ss_pred HHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 2222222348999995432 22111 0258999999999999999988543233334444444333
No 276
>PRK04457 spermidine synthase; Provisional
Probab=97.70 E-value=0.00018 Score=75.36 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=80.9
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-cc------cccccccCCC-CCCCCCccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-GL------IGVMHDWCEP-FDTYPRTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-Gl------ig~~~~~ce~-~~~yp~tyDliha 588 (666)
.-++|||+|||.|.++.+|++.- + .+.|+.+|. +..++.+.+. ++ +.+.++-+.. +...+.+||+|-+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-P--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-C--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34679999999999999998761 1 124555553 5777777665 22 2333332211 2334678999987
Q ss_pred ccccccCC--CCCCHHHHHHHhhhcccCCeEEEEE---eChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 589 AGLFSVES--KRCNMSTIMLEMDRMLRPGGHVYIR---DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 589 ~~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~ii~---d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
+ .|.... .......++.++.++|+|||.+++. .+......++.+.+.+.-.+.....+. ....|++|.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 454321 1122369999999999999999983 222233334444444443333333222 1246788876
No 277
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.70 E-value=0.00013 Score=73.72 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lp-----f~d~sFDl 341 (666)
.++||||||++|.-+.+++.. +|+++|+++.....|+. +.++.|... .+...+ .+-++ ...+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~-~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARE-NFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH-HHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHH-HHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 479999999999888877743 89999999987776664 444455433 233333 22222 11368999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|+.-. .-.+...++..+.++|++||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 98432 22334578889999999999998883
No 278
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.69 E-value=0.00023 Score=73.99 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+.+.. .+..+|||||||+|.++..|+++ .|+++|+++.++..++..... .....+...|+..+++
T Consensus 16 ~i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh
Confidence 445666666542 34579999999999999999876 899999999888666533321 1223345556677665
Q ss_pred CCCCee---EEEeccccccc
Q 005981 335 PSQAFD---LIHCSRCRINW 351 (666)
Q Consensus 335 ~d~sFD---lVv~s~~l~h~ 351 (666)
+ +|| +|+++. -.|+
T Consensus 90 ~--~~d~~~~vvsNl-Py~i 106 (253)
T TIGR00755 90 P--DFPKQLKVVSNL-PYNI 106 (253)
T ss_pred h--HcCCcceEEEcC-Chhh
Confidence 4 466 777543 3444
No 279
>PLN02476 O-methyltransferase
Probab=97.69 E-value=7.4e-05 Score=78.74 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCC-C----CCCCee
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP-Y----PSQAFD 340 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lp-f----~d~sFD 340 (666)
..++|||||+|+|..+.+++.. .|+++|.++.....|+..+ ++.|+.. .+...+ .+.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3579999999999888887753 6999999998877776544 4455542 233333 22232 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+.-. .-.....++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 998432 22334588899999999999998873
No 280
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.68 E-value=3.5e-05 Score=77.23 Aligned_cols=117 Identities=21% Similarity=0.355 Sum_probs=77.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCC-C-CCccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDT-Y-PRTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~-y-p~tyDliha~~ 590 (666)
.+||+|||.|.|..+|+.+.-+ .|++.++. ...+..+..+|+ +.+++..+.. +.. . |.+.|.||..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd---~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD---INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT---SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCC---CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 6999999999999999887212 26666663 345566677788 5555443322 111 2 4899999865
Q ss_pred cccc-------CCCCCCHHHHHHHhhhcccCCeEEEE-EeChhHHHHHHHHHHhc--CcEEE
Q 005981 591 LFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAM--GWHVT 642 (666)
Q Consensus 591 ~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii-~d~~~~~~~~~~i~~~l--~W~~~ 642 (666)
|.. .+.|=--+..|.++.|+|+|||.+.+ ||..+..+.+.+.+... .++..
T Consensus 96 -FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 96 -FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred -CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 442 22222225899999999999999999 58888888888887775 55554
No 281
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.66 E-value=9.1e-05 Score=74.42 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=92.7
Q ss_pred cCCCceeeEeeccccchHHHHHHhhCCCceEEE-EeeccCC-CCChhHHHhccc-----cccccccCCCCCCCCCccceE
Q 005981 514 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVM-NVVPVSG-FNTLPVIYDRGL-----IGVMHDWCEPFDTYPRTYDLL 586 (666)
Q Consensus 514 ~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvm-nv~~~~~-~~~l~~~~erGl-----ig~~~~~ce~~~~yp~tyDli 586 (666)
+.....+.|.|+|||.|.--+.|+.+ |-- -|+.+|+ ..||..|.+|+. .|-+++|| + .+..|||
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~---p--~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK---P--EQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC---C--CCccchh
Confidence 55678899999999999999999998 322 4666885 799999999987 57889995 2 2778999
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--eChh--HHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--DSID--VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~--~~~~~~~i~~~l~W~~~~~ 644 (666)
.|+.+|.-..+- ..+|--.=--|+|||.+-+. |+.+ ....|.+.++..-|...+.
T Consensus 97 faNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~ 155 (257)
T COG4106 97 FANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELG 155 (257)
T ss_pred hhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhC
Confidence 999888766543 35666666679999999997 5544 4677888888888876543
No 282
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.66 E-value=0.00021 Score=75.04 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCc----hhHHHhcc-------C--CeEEEeCCcchHHHHHHH----HHHHcCCCc--------------
Q 005981 274 HIRVVMDAGCGVA----SFGAYLLP-------R--NVITMSIAPKDVHENQIQ----FALERGAPA-------------- 322 (666)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~-------~--~V~gvDiS~~~l~~a~~~----~a~~rg~~~-------------- 322 (666)
..-+|+-.||+|| +++..|.+ . +|+|.|++...+..|+.- ....++++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 44433322 1 899999999988777641 111122111
Q ss_pred -----------eEEeecccCCCCCCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEE
Q 005981 323 -----------MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 323 -----------~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st 376 (666)
.+...+...-++..+.||+|+|-++++.+....+ .++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1111111111213467999999999998854443 89999999999999998873
No 283
>PLN02823 spermine synthase
Probab=97.62 E-value=0.00057 Score=74.12 Aligned_cols=102 Identities=19% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc----CCCceEEeec-ccCCCCCCCCeeEEEe
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFA-TRRLPYPSQAFDLIHC 344 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~d-~e~Lpf~d~sFDlVv~ 344 (666)
.+++||.||+|.|..++++.+. +|+.+|+++..+..++..+.... .....+...| ..-+....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999887664 79999999988766654332211 1112233333 2223334578999996
Q ss_pred cccccccccC------hHHHHH-HHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d------~~~~L~-el~RvLkPGG~lv~st 376 (666)
- +.-.+... ...+++ .+.+.|+|||.+++..
T Consensus 183 D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 D-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred c-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 4 22222111 235777 8999999999998763
No 284
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.60 E-value=0.00032 Score=70.69 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccccc--cccccCCCCCCCCCccce
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG--VMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGlig--~~~~~ce~~~~yp~tyDl 585 (666)
.+++.+..+.-+-|||+|||+|--++.|.+.|. +|+ .+| ++.||+++.+|-+=| ++.|--|.+++=|.|||-
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 355555554556699999999999999999996 443 455 468999999965532 235556788887899997
Q ss_pred EEecccc---ccCCCCCCHH-----HHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcE
Q 005981 586 LHAAGLF---SVESKRCNMS-----TIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 586 iha~~~f---~~~~~~c~~~-----~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~ 640 (666)
+-+-+.. .+....|+.+ ..+.-+...|++|+..++.=..+....++.|...=.|.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 7765332 2222223322 34566889999999999996655555555555555554
No 285
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.60 E-value=0.00016 Score=79.71 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=67.7
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCce-EEeecccCCCCCCCCeeEEEecccccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~-~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+|||++||+|.++..++.. .|+++|+++..+..++. .++.+++... +...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 58999999999999888643 69999999988877664 4444455432 44445443321146799999643
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
. ..+..++..+.+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 334578888788899999999994
No 286
>PRK04148 hypothetical protein; Provisional
Probab=97.57 E-value=0.00018 Score=67.76 Aligned_cols=100 Identities=19% Similarity=0.137 Sum_probs=62.4
Q ss_pred HHHHhhcccccCCCCCCeEEEECCCCch-hHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCC-
Q 005981 260 DQIAKMVPDITWGHHIRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP- 335 (666)
Q Consensus 260 ~~L~~~L~~i~~g~~~~~VLDIGCGtG~-~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~- 335 (666)
+.|.+.++. .+..+|||||||+|. ++..|.+. +|+++|+++..+ +.+++.+.. +...|.-+-.+.
T Consensus 6 ~~l~~~~~~----~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~--~v~dDlf~p~~~~ 74 (134)
T PRK04148 6 EFIAENYEK----GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLN--AFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHhccc----ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCe--EEECcCCCCCHHH
Confidence 344444442 344789999999995 88888876 999999999754 444555543 333343332222
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
-+.+|+|.+.+. ..+....+.++.+.+ |.-+++..
T Consensus 75 y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 75 YKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 367999997654 234455666666654 45566664
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.56 E-value=0.001 Score=68.55 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCN 600 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~ 600 (666)
.|-|||||-|-.|. .....|..|.++++...-+. +--| ..|.-++|.|++.+-- |.. ..+
T Consensus 183 vIaD~GCGEakiA~---~~~~kV~SfDL~a~~~~V~~--cDm~-----------~vPl~d~svDvaV~CL--SLM--gtn 242 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS---SERHKVHSFDLVAVNERVIA--CDMR-----------NVPLEDESVDVAVFCL--SLM--GTN 242 (325)
T ss_pred EEEecccchhhhhh---ccccceeeeeeecCCCceee--cccc-----------CCcCccCcccEEEeeH--hhh--ccc
Confidence 48999999998776 22235788888887632111 0000 0233348999876431 222 357
Q ss_pred HHHHHHHhhhcccCCeEEEEEeChhH---HHHHHHHHHhcCcEEEEEeccCC
Q 005981 601 MSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 601 ~~~~l~E~dRiLRPgG~~ii~d~~~~---~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+.+.+.|.+|||||||.++|.+-... .....+-+..|+.++...+..+.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence 78999999999999999999865443 34466678899999887776543
No 288
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.56 E-value=4.8e-05 Score=75.67 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=82.2
Q ss_pred cCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC
Q 005981 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP 321 (666)
Q Consensus 244 Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~ 321 (666)
|-|.|.||.-..++....+.---+ ..+..+.++||+|+|.|..+..++.. +|.+.++|..|..+ -++++..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-----L~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-----LKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH-----HhhcCCc
Confidence 456788886666555444432223 24556789999999999999999887 88888888776543 2333322
Q ss_pred ceEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccC-CeEEEEE
Q 005981 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWA 375 (666)
Q Consensus 322 ~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP-GG~lv~s 375 (666)
. +.. .+.--.+-+||+|.|.+. +.-+.++..+|+.++.+|+| .|..+++
T Consensus 157 V-l~~---~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 V-LTE---IEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-eee---hhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 2 111 111113456999998776 44447888999999999999 8988877
No 289
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.56 E-value=0.00021 Score=76.12 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=59.4
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCC-CceEEeecccCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP 333 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~-~~~~~~~d~e~Lp 333 (666)
.+++.+.+.+.. .+..+|||||||+|.++..+++. +|+++|+++.++..++.+++..... ...+...|+....
T Consensus 23 ~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 456666665542 34578999999999999999876 8999999999888776554432211 2334445555544
Q ss_pred CCCCCeeEEEeccccccc
Q 005981 334 YPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~ 351 (666)
+ ..||.|+++. -.++
T Consensus 99 ~--~~~d~VvaNl-PY~I 113 (294)
T PTZ00338 99 F--PYFDVCVANV-PYQI 113 (294)
T ss_pred c--cccCEEEecC-Cccc
Confidence 4 4689998653 3555
No 290
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.54 E-value=0.00031 Score=71.11 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=79.0
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh-----ccccc-cccccCCCCCCCCCccceEEecc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----RGLIG-VMHDWCEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e-----rGlig-~~~~~ce~~~~yp~tyDliha~~ 590 (666)
.....+||.|||.|.....|+-.=++ .|-=|-|+ +.-++.|.+ .+-++ .|..=-|.|.+-+..||+||++.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S-EEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHhcC-EeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 35777999999999999988665332 11112222 355666652 22222 22222233343347999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----------hh-----HHHHHHHHHHhcCcEEEEEeccCC
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------ID-----VMDELQEIGKAMGWHVTLRETAEG 649 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----------~~-----~~~~~~~i~~~l~W~~~~~~~~~~ 649 (666)
+..|+.+. ++...|.-.-.-|||+|.+||.|+ .+ ..+.+++|.++=..++...+...|
T Consensus 131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 99999984 667788888899999999999733 22 268899999999999887665544
No 291
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00041 Score=68.64 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCeEEEECCCCchhH--HHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFG--AYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a--~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+++|+|+|||||.++ ..++.. .|+|+|+++..+..+. +.+.+.+....+...|+.+. ...||.|+.+--+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 4578999999999665 444443 9999999998887665 44444444445555555554 467899987654333
Q ss_pred cccCh-HHHHHHHHHhc
Q 005981 351 WTRDD-GILLLEVNRML 366 (666)
Q Consensus 351 ~~~d~-~~~L~el~RvL 366 (666)
+.... ..+|....++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 32222 24455444443
No 292
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.53 E-value=2.6e-05 Score=70.38 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=60.2
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCCC-CCC-CccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPFD-TYP-RTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~~-~yp-~tyDliha~ 589 (666)
.|||+|||.|.+..++++.+ . +++.+|- +..++.+.. .++ +.+++.....+. .++ ..||+|-++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~-----~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAA-----RVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTC-----EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred EEEEcCcchHHHHHHHHHHCCC-----eEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 59999999999999999987 5 4555542 233333332 122 333333222222 233 899999998
Q ss_pred cccccCC-----CCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 590 GLFSVES-----KRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 590 ~~f~~~~-----~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
--|.... .+-....++.++.|+|||||.+++-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776421 1123468899999999999999873
No 293
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.52 E-value=0.00099 Score=66.46 Aligned_cols=117 Identities=12% Similarity=-0.035 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeec
Q 005981 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d 328 (666)
..+...+.+...+.... ...+|||++||+|.++..++.+ .|+++|.++..+..++.+. ...+.. ..+...|
T Consensus 32 t~~~vrea~f~~l~~~~---~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~-~~~~~~~~~~~~~~D 107 (189)
T TIGR00095 32 TTRVVRELFFNILRPEI---QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENL-ALLKSGEQAEVVRNS 107 (189)
T ss_pred chHHHHHHHHHHHHHhc---CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHhCCcccEEEEehh
Confidence 34444555556554322 3478999999999999999876 7999999998877665443 334443 2334444
Q ss_pred c-cCCC-C-CCC-CeeEEEecccccccccChHHHHHHHH--HhccCCeEEEEEE
Q 005981 329 T-RRLP-Y-PSQ-AFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (666)
Q Consensus 329 ~-e~Lp-f-~d~-sFDlVv~s~~l~h~~~d~~~~L~el~--RvLkPGG~lv~st 376 (666)
+ ..+. + ... .||+|+.--- +.. .....++..+. .+|+++|.+++-.
T Consensus 108 ~~~~l~~~~~~~~~~dvv~~DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 108 ALRALKFLAKKPTFDNVIYLDPP-FFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHHhhccCCCceEEEECcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3 2222 1 122 4788875332 222 22334444443 4788999887764
No 294
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.51 E-value=0.00013 Score=79.63 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchhHHHhcc---CCeEEEeCCcchHHHHHHHHHHHcCCC--ceEEeecccCCCCCCCCeeEEEeccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~~~~d~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
...++|+|||.|....++.. .+++|++.++..+..+...... .++. ..+...+....||+++.||.+.+..+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 34799999999977776654 3899999998766555433222 2222 1234446778899999999999988877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 005981 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
|. ++...+++|++|+++|||+++..
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeH
Confidence 77 89999999999999999999775
No 295
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.51 E-value=0.0021 Score=64.02 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=62.9
Q ss_pred eEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCCCCCCCeeEEEeccccccc
Q 005981 277 VVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 277 ~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+++|||+|.|. ++....+.+++-+|....-+.-. ...+.+-++.+ .+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL-~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFL-KEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHH-HHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHH-HHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 79999999994 34444455899999887644322 24455567764 344444555 445689999996444
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEE
Q 005981 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 352 ~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788888999999999998874
No 296
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.50 E-value=9.6e-05 Score=71.53 Aligned_cols=69 Identities=22% Similarity=0.125 Sum_probs=52.7
Q ss_pred CCCChhHHHhccc---------cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 553 GFNTLPVIYDRGL---------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 553 ~~~~l~~~~erGl---------ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
+++||+++.+|-- +.+.+.-++.++.-+++||+|-+..++.+..+ ...+|.|+.|+|||||.++|.|-
T Consensus 6 S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 6 SSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred CHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 4688888865421 56677777877643489999999877766654 47999999999999999998764
Q ss_pred h
Q 005981 624 I 624 (666)
Q Consensus 624 ~ 624 (666)
.
T Consensus 83 ~ 83 (160)
T PLN02232 83 N 83 (160)
T ss_pred C
Confidence 3
No 297
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.47 E-value=0.0003 Score=71.06 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
+-.++.+.+...........-++|||||=+......-... .|+.||+.+.. + .+...|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------------~-~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------------P-GILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCC--------------C-CceeeccccCCC
Confidence 3445555544432211122358999998765433332222 79999987631 1 133345555554
Q ss_pred ---CCCCeeEEEecccccccccChH---HHHHHHHHhccCCeE-----EEEEEC
Q 005981 335 ---PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGY-----FAWAAQ 377 (666)
Q Consensus 335 ---~d~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~-----lv~st~ 377 (666)
++++||+|.|+.+ +.+.+++. ..++.+.+.|+|+|. |++..+
T Consensus 98 p~~~~e~FdvIs~SLV-LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 98 PKNESEKFDVISLSLV-LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred CCCcccceeEEEEEEE-EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 3679999999877 55557764 899999999999999 877753
No 298
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.0064 Score=64.50 Aligned_cols=138 Identities=20% Similarity=0.325 Sum_probs=83.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHH----Hhccccc--cccc-cCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI----YDRGLIG--VMHD-WCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~----~erGlig--~~~~-~ce~~~~yp 580 (666)
.+.+....+. +|||+|||+|-.|+.|+++. + ...|+-+|. ...++.+ .+.++=+ ++++ -+|+. .
T Consensus 151 l~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~-p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~ 222 (300)
T COG2813 151 LETLPPDLGG--KVLDLGCGYGVLGLVLAKKS-P--QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---E 222 (300)
T ss_pred HHhCCccCCC--cEEEeCCCccHHHHHHHHhC-C--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc---c
Confidence 3444544333 89999999999999999983 1 113333442 2333332 2234433 3433 33332 2
Q ss_pred CccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEEeC--hhHHHHHHHHHHhcCcEEEEEeccCCCCCceEE
Q 005981 581 RTYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHASYRI 656 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~d~--~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~ 656 (666)
..||+|-|+==|...++--. .+.++.+.-+-|++||.++|=-+ .....+|+++.. ++...... +..+|
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~V 294 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKV 294 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEE
Confidence 59999999977775543211 13788889999999999988543 334566666555 44444332 35788
Q ss_pred EEEEeC
Q 005981 657 LTADKR 662 (666)
Q Consensus 657 l~~~k~ 662 (666)
|-++|.
T Consensus 295 l~a~k~ 300 (300)
T COG2813 295 LRAKKA 300 (300)
T ss_pred EEEecC
Confidence 888773
No 299
>PRK00536 speE spermidine synthase; Provisional
Probab=97.43 E-value=0.0024 Score=66.90 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=72.2
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc-CC--CceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GA--PAMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r-g~--~~~~~~~d~e~L 332 (666)
+-.+++...+-..+ +.+++||=||.|.|..++.+++. +|+-||+++..+..++.-+..-. +. +..-......+
T Consensus 57 iYHEmLvHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~- 134 (262)
T PRK00536 57 IESELLAHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD- 134 (262)
T ss_pred hHHHHHHHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhh-
Confidence 34455555554333 56789999999999999999987 79999999987765543111111 11 11111111111
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
-..++||+|++-.. ....+.+.++|.|+|||.++..+-
T Consensus 135 -~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 135 -LDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred -ccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCC
Confidence 12368999995422 346788999999999999998643
No 300
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.42 E-value=0.00036 Score=74.86 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccccc
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
....+|+|.|.|..+..+... +|-++++....+-+++.+.+ .|+...... ..++.|-. |+|++-.+++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gd-mfq~~P~~----daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGD-MFQDTPKG----DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccc-ccccCCCc----CeEEEEeecccCC
Confidence 578999999999999888776 78888887766655544443 343333332 24555533 5999999999995
Q ss_pred cC-hHHHHHHHHHhccCCeEEEEEEC
Q 005981 353 RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 353 ~d-~~~~L~el~RvLkPGG~lv~st~ 377 (666)
++ ...+|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 33 34999999999999999999864
No 301
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.41 E-value=0.00058 Score=68.81 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=74.9
Q ss_pred hhccccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc--C--CeEEEeCCcchHHHH
Q 005981 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHEN 310 (666)
Q Consensus 235 ~~~~g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiS~~~l~~a 310 (666)
++..|-.+.+.-...+|..+...--.++.+.+. ++.+|||+.||.|.|+..++. . .|+++|++|..+...
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH
Confidence 333444444444455665555444456665543 458999999999999988886 3 799999999877655
Q ss_pred HHHHHHHcCCCce--EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEE
Q 005981 311 QIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373 (666)
Q Consensus 311 ~~~~a~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv 373 (666)
+ +.++.+++... ....|...+.. .+.||-|++... .....+|..+.+++|+||.+.
T Consensus 142 ~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 142 K-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp H-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred H-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 4 45555565542 34445555543 689999986532 334568888999999999875
No 302
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00047 Score=69.10 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhc----cC--CeEEEeCCcchHHHHHHHHHHHc----------CCCc
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL----PR--NVITMSIAPKDVHENQIQFALER----------GAPA 322 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~----~~--~V~gvDiS~~~l~~a~~~~a~~r----------g~~~ 322 (666)
-..+++.|...+ .++.+.||+|.|+|.++..++ .. .++|||.-+..+..+..+.-+.- ....
T Consensus 69 ha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 69 HATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 334444444222 345789999999998776554 22 44899888766554443222111 0112
Q ss_pred eEEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 323 MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 323 ~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.+.+.|....--+...||.|||.. ......+++...|++||.+++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 344455444444568899999863 3345667888899999999885
No 303
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0013 Score=64.64 Aligned_cols=103 Identities=18% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.....+||||||+|..+..|++. -..++|++|..+... .+-|+.++........|... .+..++.|+++.+.-
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~T-l~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEAT-LETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPP 119 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHH-HHHHHhcCCccceeehhHHh-hhccCCccEEEECCC
Confidence 34678999999999888888765 478899999766433 35565555443333333211 123388898886543
Q ss_pred ccc--------------cc--cC----hHHHHHHHHHhccCCeEEEEEEC
Q 005981 348 RIN--------------WT--RD----DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 348 l~h--------------~~--~d----~~~~L~el~RvLkPGG~lv~st~ 377 (666)
... |. .+ .+.++..+..+|.|.|.|++...
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 222 21 11 12567778889999999999864
No 304
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.37 E-value=0.00031 Score=75.58 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=61.6
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-c-----c-ccccc-CCCCCCCCCccceEEecc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-I-----G-VMHDW-CEPFDTYPRTYDLLHAAG 590 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-i-----g-~~~~~-ce~~~~yp~tyDliha~~ 590 (666)
..|||+|||+|.++.+|+++|+ +|+.+| ++++++.+.+|.- . + ....+ +..+...+.+||+|-|.+
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3699999999999999999987 677777 4688888877632 1 0 00011 111233468999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEE
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVY 619 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i 619 (666)
++.|..+. .+..++..+.++ .+||.+|
T Consensus 221 vL~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 98886542 234566666664 4555544
No 305
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.35 E-value=0.00068 Score=67.01 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCchhHHHhcc--C--C---------eEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCCCCCCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQA 338 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~--~--~---------V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~Lpf~d~s 338 (666)
+...+||--||+|++...-+. . . ++|.|+++.++..++.+ +...++.. .+...|+.++++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCC
Confidence 457899999999988754322 1 3 77999999999877754 44455543 3455578888877889
Q ss_pred eeEEEecccccccccC---h----HHHHHHHHHhccCCeEEEEE
Q 005981 339 FDLIHCSRCRINWTRD---D----GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 339 FDlVv~s~~l~h~~~d---~----~~~L~el~RvLkPGG~lv~s 375 (666)
+|.|+++.-.-.-... . ..+++++.|+|++...++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999986432111111 1 26688899999995455444
No 306
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.35 E-value=0.00038 Score=72.11 Aligned_cols=91 Identities=21% Similarity=0.386 Sum_probs=68.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhcccc-ccccccCCCCCCCCCccceEEeccccccC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLI-GVMHDWCEPFDTYPRTYDLLHAAGLFSVE 595 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGli-g~~~~~ce~~~~yp~tyDliha~~~f~~~ 595 (666)
+..++||+|||-|+.-+.|+..=- +|...+ +..|...-.+||.- =-..+|-+ =+..||+|-|-.|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL--- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL--- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh---
Confidence 567899999999999999987611 344444 35778888889982 12244632 25689999998655
Q ss_pred CCCCCHH-HHHHHhhhcccCCeEEEEE
Q 005981 596 SKRCNMS-TIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 596 ~~~c~~~-~~l~E~dRiLRPgG~~ii~ 621 (666)
|||+-+ .+|.+|.+.|+|+|.+|+.
T Consensus 162 -DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 488755 8889999999999999996
No 307
>PRK00811 spermidine synthase; Provisional
Probab=97.35 E-value=0.00094 Score=70.75 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=61.8
Q ss_pred ceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc------cc-----cccccccCCCC-CCCCCcc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR------GL-----IGVMHDWCEPF-DTYPRTY 583 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er------Gl-----ig~~~~~ce~~-~~yp~ty 583 (666)
+-++|||+|||.|+.++.+++. ++ .+|+-++. +.+++.+.+. |+ +.+.++-...+ ..-+++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~----~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSV----EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCC----CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 4578999999999999999887 32 24555553 4566666542 11 23333332222 2224799
Q ss_pred ceEEeccccccCCC--CCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|-++ ++..... .---...+.++.|+|+|||.+++.
T Consensus 152 DvIi~D-~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVD-STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEEC-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999985 2222110 001146788999999999999995
No 308
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.33 E-value=0.00069 Score=70.65 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCCCeEEEECCCCchhHHHhc-cC--CeEEEeCCcchHHHHHHHHHHH---------------cCC--------------
Q 005981 273 HHIRVVMDAGCGVASFGAYLL-PR--NVITMSIAPKDVHENQIQFALE---------------RGA-------------- 320 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~-~~--~V~gvDiS~~~l~~a~~~~a~~---------------rg~-------------- 320 (666)
.++.++||||||.-..-..-+ +. +|+..|+++....+.+.....+ .|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 345789999999864422222 22 8999999987665443211111 110
Q ss_pred CceEEeecccC-CCCCC-----CCeeEEEecccccccccChH---HHHHHHHHhccCCeEEEEEE
Q 005981 321 PAMVAAFATRR-LPYPS-----QAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 321 ~~~~~~~d~e~-Lpf~d-----~sFDlVv~s~~l~h~~~d~~---~~L~el~RvLkPGG~lv~st 376 (666)
...+...|..+ -|+.. ..||.|+++.|+.....+.+ .+++++.++|||||+|++..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01122334332 33332 35999999999888887876 78999999999999999985
No 309
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.32 E-value=0.00044 Score=71.26 Aligned_cols=126 Identities=10% Similarity=0.124 Sum_probs=73.0
Q ss_pred eeeEeeccccchHHHHHHhh----CCCceEEEEeeccCC-CCChhHH----Hhccc---ccccccc-CCCCCCC-----C
Q 005981 519 LRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSG-FNTLPVI----YDRGL---IGVMHDW-CEPFDTY-----P 580 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~-~~~l~~~----~erGl---ig~~~~~-ce~~~~y-----p 580 (666)
-++|||+|||+|.-+.+|+. .| .|+.+|. +..+.+| .+.|+ |.+.++- .|.++.+ .
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g------~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDG------RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCC------EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 45799999999975444433 23 3444543 3344443 33455 4444332 2222221 2
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe---------Ch--------hHHHHHHHH----HHhcCc
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------SI--------DVMDELQEI----GKAMGW 639 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---------~~--------~~~~~~~~i----~~~l~W 639 (666)
.+||+|..+. +.-.+..++.++-|.|||||.+++.+ .. .....|+++ ...=+|
T Consensus 143 ~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~ 216 (234)
T PLN02781 143 PEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRV 216 (234)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCe
Confidence 6899998872 12345678888999999999999742 10 112344444 334466
Q ss_pred EEEEEeccCCCCCceEEEEEEeC
Q 005981 640 HVTLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 640 ~~~~~~~~~~~~~~e~~l~~~k~ 662 (666)
...+....+ .+++++|.
T Consensus 217 ~~~~lp~gd------G~~i~~k~ 233 (234)
T PLN02781 217 EISQISIGD------GVTLCRRL 233 (234)
T ss_pred EEEEEEeCC------ccEEEEEe
Confidence 666666544 48888874
No 310
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.31 E-value=0.00067 Score=65.79 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
-..+.++..+.- ..+.-|||+|.|||.++..++.+ .+++++.++...+.... +.....+..+|+..
T Consensus 35 ~lA~~M~s~I~p----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~-----~~p~~~ii~gda~~ 105 (194)
T COG3963 35 ILARKMASVIDP----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ-----LYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHhccCc----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH-----hCCCccccccchhh
Confidence 344555555542 34568999999999999999876 79999999976543322 11111233333333
Q ss_pred CC-----CCCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEE
Q 005981 332 LP-----YPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lp-----f~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st 376 (666)
+. +.+..||.|+|..-+..+..... ++|.++...|++||.++--+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 32 56788999998876666643333 78899999999999998764
No 311
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.31 E-value=0.00077 Score=75.84 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=72.8
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCC-CCCCCc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPF-DTYPRT 582 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~-~~yp~t 582 (666)
+.+..+ .+|||||||.|+++.+|++. +-+ ..|+.+|. +.+++.+.+ .|+ +-+.+.....+ ..++++
T Consensus 246 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~---~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 246 LDPKGG--DTVLDACAAPGGKTTHIAELLKNT---GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred hCCCCC--CEEEEeCCCCCHHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 444444 46999999999999998875 100 14555663 455555543 354 33443332222 234589
Q ss_pred cceEEeccccccCC------C------CCCH-------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHhc-C
Q 005981 583 YDLLHAAGLFSVES------K------RCNM-------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKAM-G 638 (666)
Q Consensus 583 yDliha~~~f~~~~------~------~c~~-------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~l-~ 638 (666)
||+|-++.-.+..+ + ..++ ..+|.++-|+|||||.++++ ...+.-..++.+++.- .
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence 99998653222111 0 0111 36899999999999999985 2223444566666654 2
Q ss_pred cEE
Q 005981 639 WHV 641 (666)
Q Consensus 639 W~~ 641 (666)
|+.
T Consensus 401 ~~~ 403 (444)
T PRK14902 401 FEL 403 (444)
T ss_pred cEE
Confidence 554
No 312
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.30 E-value=0.0012 Score=68.62 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCC----CceEEeecc-cCCCCCCC-CeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA----PAMVAAFAT-RRLPYPSQ-AFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~----~~~~~~~d~-e~Lpf~d~-sFDlV 342 (666)
.++++||-||.|.|..++.+.+. +|+.||+++..+..++.-+...... ...+...|. .-+.-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 35789999999999999999875 7999999998776665433332221 223333332 11111223 89999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEE
Q 005981 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 343 v~s~~l~h~~~d----~~~~L~el~RvLkPGG~lv~st 376 (666)
+.-.. ...... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 95332 222111 2488999999999999999875
No 313
>PRK01581 speE spermidine synthase; Validated
Probab=97.30 E-value=0.00094 Score=72.75 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=81.5
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc--------c-c----cccccccCCC-CCCCCC
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR--------G-L----IGVMHDWCEP-FDTYPR 581 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er--------G-l----ig~~~~~ce~-~~~yp~ 581 (666)
.+-++||++|||.|+.++.+++.+ -+.+|+-++- +.++++|.+. | + +.+.++-+-. +..-++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~---~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE---TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC---CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 445789999999999999999874 1235555553 5777877751 1 1 2222222111 122247
Q ss_pred ccceEEeccccccCC---CCCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEEEeccCCC-CC
Q 005981 582 TYDLLHAAGLFSVES---KRCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEGP-HA 652 (666)
Q Consensus 582 tyDliha~~~f~~~~---~~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~~~~~~~~-~~ 652 (666)
.||+|-++. ..... .+---.+.+..+.|.|+|||.+++... .+....+.+.++.....+....+---. ..
T Consensus 226 ~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~ 304 (374)
T PRK01581 226 LYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGT 304 (374)
T ss_pred CccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCC
Confidence 899999872 21111 111114788999999999999998633 222233445455555444433221111 12
Q ss_pred ceEEEEEEeC
Q 005981 653 SYRILTADKR 662 (666)
Q Consensus 653 ~e~~l~~~k~ 662 (666)
...+++|.|.
T Consensus 305 ~WgF~~as~~ 314 (374)
T PRK01581 305 DWGFHIAANS 314 (374)
T ss_pred ceEEEEEeCC
Confidence 3677777764
No 314
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.30 E-value=0.00056 Score=71.67 Aligned_cols=122 Identities=17% Similarity=0.132 Sum_probs=69.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCCCCcc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~yp~ty 583 (666)
.+.+..+. .|||+|||.|+.+.+|++.--+ .-.|+.+|. +.+++.+.++ |+ +-+.+.-...+......|
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~--~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKN--EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCC--CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 34455553 4999999999999888764000 003566664 4555444332 54 344444433333333569
Q ss_pred ceEEeccccccCC------C------CCC-------HHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 584 DLLHAAGLFSVES------K------RCN-------MSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 584 Dliha~~~f~~~~------~------~c~-------~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
|.|-++--.+..+ + .-+ -.++|.++-++|||||+++++ ...+.-..++.+++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 9998643322211 0 001 126899999999999999997 233334445555544
No 315
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.29 E-value=0.0022 Score=72.60 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC-CCCCCeeEEE--
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIH-- 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp-f~d~sFDlVv-- 343 (666)
.++.+|||++||.|.=+.++++. .|++.|+++.-+...+. .....|+.+ .+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~-nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA-NISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 35579999999999766665543 79999999987765553 444456655 33334444442 2236799999
Q ss_pred --ecccc---------cccccC--------hHHHHHHHHHhccCCeEEEEEE
Q 005981 344 --CSRCR---------INWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 344 --~s~~l---------~h~~~d--------~~~~L~el~RvLkPGG~lv~st 376 (666)
|+... ..|..+ ...+|..+.+.|||||.++.+|
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 55331 122111 1367888999999999999997
No 316
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.26 E-value=0.00098 Score=69.32 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=65.0
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeec-ccCCCC------CCCCee
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLPY------PSQAFD 340 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d-~e~Lpf------~d~sFD 340 (666)
.++|||||+++|.-+.+++.. +|+++|.++.....|+..+. +.|+.. .+...+ .+.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 478999999999877766643 89999999877766664444 345433 222222 232321 136899
Q ss_pred EEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
+|+.- +.-..-..++..+.+.|++||.+++..
T Consensus 159 ~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVD----ADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEec----CCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99843 222333577888899999999998863
No 317
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.26 E-value=0.00066 Score=73.25 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=60.2
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp 580 (666)
.+.+.++.+. .|||+|||+|.+++.|++.. ..- .|+.+|. +.+++.+.+ .|+ +.+.+.-........
T Consensus 73 l~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g---~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 73 MEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 3445555553 59999999999999998751 100 2445553 456655544 354 223332221111112
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
..||+|.+.. .+..+...+.|.|||||.+++-.
T Consensus 148 ~~fD~Ii~~~---------g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTV---------GVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECC---------chHHhHHHHHHhcCCCCEEEEEe
Confidence 6799999862 22345556778999999998854
No 318
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.25 E-value=0.0073 Score=59.91 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=89.7
Q ss_pred hhhhhh--hHhHHHHHHHH-HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CC---ChhHHHhc-
Q 005981 492 ELFKAE--SKYWNEIIESY-VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FN---TLPVIYDR- 563 (666)
Q Consensus 492 ~~f~~d--~~~w~~~v~~Y-~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~---~l~~~~er- 563 (666)
+.|..+ ...-|+-|.-- ...|.+..+.+ ++|+|||+|+.+-.++-.+ =..-|+.++. +. +.+...+|
T Consensus 7 ~~F~~~~~~p~TK~EIRal~ls~L~~~~g~~--l~DIGaGtGsi~iE~a~~~---p~~~v~AIe~~~~a~~~~~~N~~~f 81 (187)
T COG2242 7 ELFERDEGGPMTKEEIRALTLSKLRPRPGDR--LWDIGAGTGSITIEWALAG---PSGRVIAIERDEEALELIERNAARF 81 (187)
T ss_pred hhhccCCCCCCcHHHHHHHHHHhhCCCCCCE--EEEeCCCccHHHHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHh
Confidence 444444 33344444311 23456667765 9999999999887776221 1135677774 23 33333343
Q ss_pred cc--cccccccC-CCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCc
Q 005981 564 GL--IGVMHDWC-EPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGW 639 (666)
Q Consensus 564 Gl--ig~~~~~c-e~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W 639 (666)
|+ +-+...+. |.++.+| ++|.|--.+ + -.++.+|......|||||.+|.. -+.+...++-+.++.+.+
T Consensus 82 g~~n~~vv~g~Ap~~L~~~~-~~daiFIGG-----g--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 82 GVDNLEVVEGDAPEALPDLP-SPDAIFIGG-----G--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCcEEEEeccchHhhcCCC-CCCEEEECC-----C--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 44 44555553 2244555 788877653 2 46789999999999999999997 678888888899999999
Q ss_pred -EEE
Q 005981 640 -HVT 642 (666)
Q Consensus 640 -~~~ 642 (666)
++.
T Consensus 154 ~ei~ 157 (187)
T COG2242 154 REIV 157 (187)
T ss_pred ceEE
Confidence 543
No 319
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.23 E-value=0.00059 Score=76.49 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCCC-
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTY- 579 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~y- 579 (666)
.+++..|. .|||||||.||.+.+|++. +. .|+.+|. +.+++.+.++ |+ +.+.+.-...++.+
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g-----~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQG-----KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 34555554 5999999999999888775 22 4666663 5666655443 54 33333222223322
Q ss_pred CCccceEEeccccccCCCCC-------------------CHHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHh
Q 005981 580 PRTYDLLHAAGLFSVESKRC-------------------NMSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKA 636 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c-------------------~~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~ 636 (666)
+.+||.|-++.--|..+.-. .-..+|.+.-+.|||||.++++ ...+..+.|+.++++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 47899998753322221100 0136788999999999999997 444555556666553
No 320
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.22 E-value=0.00065 Score=76.07 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=71.6
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc-cccccccCCCCCC-CC-Cc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RT 582 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~~~~~ce~~~~-yp-~t 582 (666)
.+++..|. .|||+|||.|+.+.+|++..-. ..|+.+|. +.++..+.++ |+ +.+.+.-+..... ++ .+
T Consensus 239 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 239 LLAPQNGE--RVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HcCCCCCC--EEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 34555553 5999999999999999887311 14666663 4555555433 43 3333222222222 33 78
Q ss_pred cceEEeccccccCC------------CCCC-------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHh
Q 005981 583 YDLLHAAGLFSVES------------KRCN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA 636 (666)
Q Consensus 583 yDliha~~~f~~~~------------~~c~-------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~ 636 (666)
||.|-++.-++..+ ..-+ ...+|.++-++|||||+++++. ..+..+.++..+++
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 99998543322111 0001 1368999999999999999873 34444556666554
No 321
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.22 E-value=0.00081 Score=75.71 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYP 580 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp 580 (666)
.+....| ..|||+|||.|+.+.+|++. +. .|+.+|. +.+++.+.+ .|+ |.+.....+.+. -+
T Consensus 245 ~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~-----~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 245 LLNPQPG--STVLDLCAAPGGKSTFMAELMQNRG-----QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PE 316 (445)
T ss_pred hcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cC
Confidence 3444445 35999999999998887763 22 4566663 455554433 354 333322222222 13
Q ss_pred CccceEEec----c--ccccCC------CCCCH-------HHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHHhc
Q 005981 581 RTYDLLHAA----G--LFSVES------KRCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM 637 (666)
Q Consensus 581 ~tyDliha~----~--~f~~~~------~~c~~-------~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~~l 637 (666)
.+||+|-++ + ++.... ...++ ..+|.++-|+|||||.++++. ..+....|+.++++-
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 689999853 2 222110 00111 268999999999999999973 334455666776653
No 322
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.21 E-value=0.0022 Score=67.62 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc---C--CeEEEeCCcchHHHHHHHHHHHcC-CCce-EEe-ec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R--NVITMSIAPKDVHENQIQFALERG-APAM-VAA-FA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~---~--~V~gvDiS~~~l~~a~~~~a~~rg-~~~~-~~~-~d 328 (666)
..+.++...+++ -.+++|||+|||.|.-.-...+ . +++++|.|+.|+..++. ...... .... ... .-
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhh
Confidence 445566655554 3567999999999964443332 2 89999999998866543 222211 1110 000 00
Q ss_pred ccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+..++. ..|+|++++++..+.+.. ..+++.+.+.+.+ ++++.++
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 1223332 339999999988885421 2566666666655 8888864
No 323
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.20 E-value=0.00083 Score=75.38 Aligned_cols=126 Identities=16% Similarity=0.253 Sum_probs=75.1
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCC----C
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFD----T 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~----~ 578 (666)
.+++..|. .|||+|||.||.+.+|++. +-. -.|+.+|. ..+++.+.++ |+ +.+.+.-.+.+. .
T Consensus 247 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~---g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 247 LLDPQPGE--VILDACAAPGGKTTHIAELMGDQ---GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred HhCCCCcC--EEEEeCCCCchhHHHHHHHhCCC---ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence 34555554 4999999999999998875 100 13566663 4566555432 44 333332222222 1
Q ss_pred CCCccceEEec------cccccCCC---C---CC-------HHHHHHHhhhcccCCeEEEEEe----ChhHHHHHHHHHH
Q 005981 579 YPRTYDLLHAA------GLFSVESK---R---CN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGK 635 (666)
Q Consensus 579 yp~tyDliha~------~~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~ii~d----~~~~~~~~~~i~~ 635 (666)
.+.+||.|-++ |++.+..+ + .+ -..+|.++-|+|||||+++++. ..+....|+..++
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 23689999864 22222110 0 11 2478999999999999999873 3455667777776
Q ss_pred hc-CcEE
Q 005981 636 AM-GWHV 641 (666)
Q Consensus 636 ~l-~W~~ 641 (666)
+- .|+.
T Consensus 402 ~~~~~~~ 408 (434)
T PRK14901 402 RHPDWKL 408 (434)
T ss_pred hCCCcEe
Confidence 65 4653
No 324
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.19 E-value=0.0008 Score=75.31 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=69.0
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhC-C-CceEEEEeeccCC-CCChhHHHhc----cc-ccc--ccccCCCCCC--
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVSG-FNTLPVIYDR----GL-IGV--MHDWCEPFDT-- 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~-~~vwvmnv~~~~~-~~~l~~~~er----Gl-ig~--~~~~ce~~~~-- 578 (666)
.+++..| ..|||||||.||.+.+|++. + . .|+.+|. +.++..+.++ |+ +-+ ....-.....
T Consensus 233 ~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~-----~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 233 WLAPQNE--ETILDACAAPGGKTTHILELAPQA-----QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HhCCCCC--CeEEEeCCCccHHHHHHHHHcCCC-----eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 4455555 46999999999999999875 2 2 3555563 4555554333 54 111 1111010111
Q ss_pred CCCccceEEec------cccccCCC---C---CC-------HHHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHH
Q 005981 579 YPRTYDLLHAA------GLFSVESK---R---CN-------MSTIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGK 635 (666)
Q Consensus 579 yp~tyDliha~------~~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~ 635 (666)
-..+||.|.++ |++....+ + -+ -..+|.++-|+|||||+++++ ...+.-..|+.+++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 13789999864 23322111 0 00 137999999999999999997 33344445555555
Q ss_pred h
Q 005981 636 A 636 (666)
Q Consensus 636 ~ 636 (666)
+
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 4
No 325
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.16 E-value=0.002 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=60.1
Q ss_pred eeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-----c-----ccccccccC-CCCCCCCCccceE
Q 005981 519 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-----G-----LIGVMHDWC-EPFDTYPRTYDLL 586 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-----G-----lig~~~~~c-e~~~~yp~tyDli 586 (666)
-++||++|||.|+++..+++.+ + +.+|+-++. ++.++.+.+. | -+.+.+.-. +-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~--~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-S--VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-C--cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4589999999999999998874 1 234444543 4555555442 1 011222111 1111235799999
Q ss_pred EeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-++.... ...... ....+..+.|+|+|||.+++.
T Consensus 150 i~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 8864321 111111 357888999999999999985
No 326
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.16 E-value=0.0013 Score=72.07 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccC-CC-CC--------------C
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-YP--------------S 336 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~-Lp-f~--------------d 336 (666)
.+|||++||+|.++..|+.. +|+++|+++.++..++. .+...++.. .+...|+.+ ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988875 89999999999987764 455555543 344444332 11 10 1
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
..||+|+.---.- .-...+++.+. ++++.++++..|
T Consensus 287 ~~~D~v~lDPPR~---G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRA---GLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHHH---ccCCEEEEEeCH
Confidence 2589998543211 11234444444 378999998653
No 327
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.13 E-value=0.0014 Score=71.60 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=60.6
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC-C-------C---C-----C
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-P-------Y---P-----S 336 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L-p-------f---~-----d 336 (666)
.+|||+|||+|.++..|+.. .|+|+|+++.++..++. .+...++.. .+...++.++ + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 36999999999999988875 89999999999987764 445555543 3344443321 1 1 0 1
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 337 ~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
..||+|+.---.- .-...++..+ ++|++.++++..
T Consensus 278 ~~~d~v~lDPPR~---G~~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 278 YNCSTIFVDPPRA---GLDPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHH---HcCCcEEEEEcC
Confidence 2379988533211 1112444444 348999999864
No 328
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.00085 Score=68.87 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=80.5
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-----CCChhHHHhccc--cccccccCCC-CCCC-C-CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-----FNTLPVIYDRGL--IGVMHDWCEP-FDTY-P-RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-----~~~l~~~~erGl--ig~~~~~ce~-~~~y-p-~tyDliha~~ 590 (666)
.+|+||||.|.|-.+|+++.=++ |++.++- ...+..+.+.|| +.++...++. +..+ | ++.|-|+-.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~---nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~- 126 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK---NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN- 126 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC---CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE-
Confidence 59999999999999999983222 5555542 466788888899 7777554444 3333 3 499999865
Q ss_pred cccc-------CCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHH-HHHHHHh---cCcEEE
Q 005981 591 LFSV-------ESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDE-LQEIGKA---MGWHVT 642 (666)
Q Consensus 591 ~f~~-------~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~-~~~i~~~---l~W~~~ 642 (666)
|.. .+.|=--+..|.++.|+|+|||.+.+. |..+..+. +++.+.. +.+...
T Consensus 127 -FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~ 189 (227)
T COG0220 127 -FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESE 189 (227)
T ss_pred -CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhcccc
Confidence 653 233322358999999999999999995 77666555 6665544 444433
No 329
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.08 E-value=0.0018 Score=63.69 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=74.0
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCCh----hHHHhccc---cccc-cccCCCCCCCCCccceEEeccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL---IGVM-HDWCEPFDTYPRTYDLLHAAGL 591 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l----~~~~erGl---ig~~-~~~ce~~~~yp~tyDliha~~~ 591 (666)
+|||+|||-|.+-..|++.|.. --++.+| ++..+ .+|..+|+ |... .|.-.+ ...+..||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 7999999999999999999752 1155665 33333 33444566 3333 222211 123588999996554
Q ss_pred c---ccCCCC--CCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEE
Q 005981 592 F---SVESKR--CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 592 f---~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~ 641 (666)
+ +...+. -.+.-.+--++++|+|||.|+|+.-.-..++|.+....-..+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 4 333211 1224567778999999999999977666666666665554443
No 330
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.00084 Score=68.64 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=71.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc------cccccccCCCCCCCC---CccceEEecc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP---RTYDLLHAAG 590 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl------ig~~~~~ce~~~~yp---~tyDliha~~ 590 (666)
.||.+|||.|.---=|++..-+ =-+-|..-| +++.+.+.-++-- -...+|.+.+-...| .+.|+|.+--
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n-~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN-NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCC-CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 7999999999977777766322 001233333 3455555544322 445566665543333 9999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh
Q 005981 591 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 591 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
+||..+. -.+..+|..+.|+|||||.+++||.-.
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9998764 367899999999999999999998643
No 331
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.07 E-value=0.0011 Score=65.81 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEe
Q 005981 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAA 326 (666)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~ 326 (666)
++..+..-+.+...|... .-.+.++||+-||+|.++...+.+ .|+.||.++..+...+.+ ...-+... .+..
T Consensus 22 RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N-~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKN-LEKLGLEDKIRVIK 98 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHH-HHHHT-GGGEEEEE
T ss_pred CCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHH-HHHhCCCcceeeec
Confidence 455666677777777643 023479999999999999987776 899999999776655443 33334332 2333
Q ss_pred ec-ccCCC---CCCCCeeEEEecccccccccC-hHHHHHHHH--HhccCCeEEEEEEC
Q 005981 327 FA-TRRLP---YPSQAFDLIHCSRCRINWTRD-DGILLLEVN--RMLRAGGYFAWAAQ 377 (666)
Q Consensus 327 ~d-~e~Lp---f~d~sFDlVv~s~~l~h~~~d-~~~~L~el~--RvLkPGG~lv~st~ 377 (666)
.| ...+. .....||+|++--- ... .. ...++..+. .+|+++|.+++-..
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPP-Y~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPP-YAK-GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--S-TTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCC-ccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33 22221 24688999996533 222 12 256677766 79999999988753
No 332
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0017 Score=72.40 Aligned_cols=100 Identities=20% Similarity=0.330 Sum_probs=79.4
Q ss_pred eEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccccccccc
Q 005981 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
++|-+|||.-.+...+.+. .|+.+|+|+..++..+...++++ ....+...++..+.|++++||+|+.-..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999988888765 89999999988876665555332 2234555678899999999999998888777765
Q ss_pred ChH---------HHHHHHHHhccCCeEEEEEEC
Q 005981 354 DDG---------ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 354 d~~---------~~L~el~RvLkPGG~lv~st~ 377 (666)
+.. ..+.++.|+|++||.++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 543 456899999999999877765
No 333
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.05 E-value=0.0013 Score=74.01 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=71.1
Q ss_pred hhhhhhhhHhHH---HHHHHHHHhcccCCC----ceeeEeeccccchHHHHHHhhCCCc-eEEEEeeccCC-CC---Ch-
Q 005981 491 KELFKAESKYWN---EIIESYVRALHWKKM----KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSG-FN---TL- 557 (666)
Q Consensus 491 ~~~f~~d~~~w~---~~v~~Y~~~l~~~~~----~iRnvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~-~~---~l- 557 (666)
.+.|+.|.-+.. +.|....+-. .... +-..|||+|||.|-....-++-+.. .-...|..++. ++ ++
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEEALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHHHHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred HhhHhcCHHHHHHHHHHHHHHHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 388888876654 3332222211 1222 1346999999999986433222100 00113445553 22 22
Q ss_pred hHHHhccc---cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 558 PVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 558 ~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
..+.+.|+ |.++|+--|.+.. |.-.|+|-+- ++....+...+...|.-.||.|+|||.+|=
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred HHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 22244454 8888888777664 7899999974 444444555778899999999999998763
No 334
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.02 E-value=0.0078 Score=64.91 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=73.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHcCCCc-eE--Ee
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPA-MV--AA 326 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~--~~ 326 (666)
..+.|++.++ ....++|+|||+|.=+..|++. .++++|+|...+..+..+..... .+. .+ ..
T Consensus 66 ~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~ 138 (319)
T TIGR03439 66 HSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLL 138 (319)
T ss_pred HHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEE
Confidence 4455555554 3358999999999655444332 68999999999988776665222 222 11 12
Q ss_pred ecc----cCCCC--CCCCeeEEEecccccccccCh--HHHHHHHHH-hccCCeEEEEEECCCCCCHHHHHHHH
Q 005981 327 FAT----RRLPY--PSQAFDLIHCSRCRINWTRDD--GILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 390 (666)
Q Consensus 327 ~d~----e~Lpf--~d~sFDlVv~s~~l~h~~~d~--~~~L~el~R-vLkPGG~lv~st~P~~~~~~el~~~w 390 (666)
++. ..++- ......+++.....+.-.+.. ..+|+++++ .|+|||.|++..- .......+..+|
T Consensus 139 gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D-~~k~~~~l~~AY 210 (319)
T TIGR03439 139 GTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD-GCKDPDKVLRAY 210 (319)
T ss_pred ecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC-CCCCHHHHHHHh
Confidence 222 22321 123457776554333332333 388999999 9999999998742 223334444555
No 335
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.01 E-value=0.0061 Score=59.76 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeec---
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA--- 328 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d--- 328 (666)
.+.++.+...-+. .+...+|||+||++|.|+..+.++ .|+|+|+.+.... .....+. .......
T Consensus 8 KL~ei~~~~~~~~-~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 8 KLYEIDEKFKIFK-PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSFIQGDITNPENIKD 80 (181)
T ss_dssp HHHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEEEHSHH
T ss_pred HHHHHHHHCCCCC-cccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceeeeecccchhhHHHh
Confidence 3455555554221 124589999999999999999876 7999999875110 0000010 0111111
Q ss_pred ccC-CCCCCCCeeEEEeccccccccc----ChH-------HHHHHHHHhccCCeEEEEEECCC
Q 005981 329 TRR-LPYPSQAFDLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 329 ~e~-Lpf~d~sFDlVv~s~~l~h~~~----d~~-------~~L~el~RvLkPGG~lv~st~P~ 379 (666)
+.. ++-..+.||+|+|-.+ ..... +.. ..+.-+.+.|++||.+++..+..
T Consensus 81 i~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp GGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred hhhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 111 1112268999997542 22221 111 34445567899999999987643
No 336
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0024 Score=71.55 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=80.5
Q ss_pred ccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc-eEE
Q 005981 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVA 325 (666)
Q Consensus 249 t~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~ 325 (666)
..|.+......+.|.+...+........++||+=||.|.|+..|+++ +|+|+++++.++..|+ +.|+.+++.+ .+.
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~ 346 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFI 346 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEE
Confidence 35655554545555444443332345578999999999999999977 9999999999998776 5666677664 455
Q ss_pred eecccCCCC---CCCCeeEEEecccccccccChH-HHHHHHHHhccCCeEEEEEEC
Q 005981 326 AFATRRLPY---PSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 326 ~~d~e~Lpf---~d~sFDlVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~ 377 (666)
..+++++.. ....+|.|+..--. .-.+ .+++.+ ..++|-..+++|..
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR----~G~~~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPR----AGADREVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCC----CCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence 555555542 23578999842211 1112 444444 45678889999964
No 337
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.00 E-value=0.0027 Score=67.50 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=65.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEE--eecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA--AFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~--~~d~e~L 332 (666)
|...+++.-.+ -..+.|||+|||+|.++...+.. +|++++.|. |...|+. ....+.+...+. .+-++++
T Consensus 165 Y~~Ail~N~sD----F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 165 YQRAILENHSD----FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred HHHHHHhcccc----cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccc
Confidence 34444444433 34578999999999766544433 999999876 5544443 223333333222 2346777
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 005981 333 PYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 333 pf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~s 375 (666)
.+| +..|+|++--+..-+..+. -...--.+|.|+|.|.++=+
T Consensus 239 eLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 239 ELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred cCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 766 6799999654322221211 12233356999999998543
No 338
>PLN02366 spermidine synthase
Probab=97.00 E-value=0.0048 Score=66.22 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=60.8
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc------cc----cccccccCCC-CCCC-CCccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWCEP-FDTY-PRTYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er------Gl----ig~~~~~ce~-~~~y-p~tyD 584 (666)
.+-++|||+|||.|+.++++++.+ +|.-+-++.+| +..++++.+. |+ +.+.++-+-. .... .+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 346789999999999999999874 22323333433 2344444332 22 3333332211 1223 37899
Q ss_pred eEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE
Q 005981 585 LLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 585 liha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+|-++. +........ -..++..+.|.|+|||.+++.
T Consensus 168 vIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999853 322211110 147889999999999999873
No 339
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.99 E-value=0.00061 Score=69.26 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCC---CceEEeecccCC--CCCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRL--PYPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~---~~~~~~~d~e~L--pf~d~sFDlVv~ 344 (666)
+.+.+|||...|-|..+..-.++ .|+.++-++.-+..|.++- ..+++ ...+...|+.++ .|+|.+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEee
Confidence 35689999999999998887776 7899998887654332211 11121 112333343222 277899999984
Q ss_pred cccccccccC--hHHHHHHHHHhccCCeEEEEEE
Q 005981 345 SRCRINWTRD--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 345 s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st 376 (666)
---.+..... ...+.+|++|+|||||.++-.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 3222222121 2478899999999999987664
No 340
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.98 E-value=0.0019 Score=66.43 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=66.1
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc-------cc--cccccccCCCCCCCCCccceEEec
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR-------GL--IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er-------Gl--ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
.+|||+|||+|+|+..|+++|+ -.|+.+|. ++++...+.. +. |. +.+|-+-...+ -++|+.-++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga----~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~-~~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA----KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDF-ATFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC----CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCc-eeeeEEEee
Confidence 4699999999999999999965 24666664 4466542222 11 22 12342221112 256655554
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-------------------eCh---hHHHHHHHHHHhcCcEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DSI---DVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-------------------d~~---~~~~~~~~i~~~l~W~~~~~ 644 (666)
. ..+|-.|.+.|+| |.+|+= |.. .+++++...+..+.|++.-.
T Consensus 151 --------~---~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 --------L---ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred --------h---HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 2 3578889999999 777762 322 24566666778888987543
No 341
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.95 E-value=0.0055 Score=67.68 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeec-ccCCC---CCCCCeeEEEe
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA-TRRLP---YPSQAFDLIHC 344 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d-~e~Lp---f~d~sFDlVv~ 344 (666)
+++|||+-|=||.++.+.+.. +|++||+|...+..++.+.. .+|+.. .+...| .+-+. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 489999999999888777653 99999999999988875544 455432 344444 22222 22458999996
Q ss_pred ccccc--------ccccChHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 005981 345 SRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (666)
Q Consensus 345 s~~l~--------h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~~~e 385 (666)
---.+ ....+...++..+.++|+|||.+++++-...-....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 32211 111233478889999999999999997433344343
No 342
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0057 Score=63.72 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=88.6
Q ss_pred hhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCChhHHHh-------cccc
Q 005981 496 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLPVIYD-------RGLI 566 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~l~~~~e-------rGli 566 (666)
-+|+-|.+.|-.-.+...+..+. .+||+|||.|..+-.|+.. .+.|....+. +..+..|.| .|-|
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~--~ildlgtGSGaIslsll~~L~~~~v~AiD~S----~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHT--HILDLGTGSGAISLSLLHGLPQCTVTAIDVS----KAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccc--eEEEecCCccHHHHHHHhcCCCceEEEEecc----HHHHHHHHHHHHHHhhcCce
Confidence 45777887776443333333333 5999999999999988765 3323333333 333333333 3558
Q ss_pred ccccccC--CCCCCCC---CccceEEeccc--cccC-------------------CCCCC--HHHHHHHhhhcccCCeEE
Q 005981 567 GVMHDWC--EPFDTYP---RTYDLLHAAGL--FSVE-------------------SKRCN--MSTIMLEMDRMLRPGGHV 618 (666)
Q Consensus 567 g~~~~~c--e~~~~yp---~tyDliha~~~--f~~~-------------------~~~c~--~~~~l~E~dRiLRPgG~~ 618 (666)
++.|..- +.+.++| ..+|+|.|+-= ++.. +..|. +..+..=.-|.|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 8887633 3366776 89999988632 2110 11111 113444455999999999
Q ss_pred EEEe-----ChhHHHH-HHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 619 YIRD-----SIDVMDE-LQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 619 ii~d-----~~~~~~~-~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
++.= ....... ++...+---|.+.+...-. +.+++++..+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~---~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFA---GRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeeccc---CCcceEEEEe
Confidence 9962 2222332 3333444456665554322 4677776654
No 343
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.90 E-value=0.002 Score=65.65 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=87.3
Q ss_pred eeEeeccccchHHHHHHhhCCC-ceEEEEeeccCCCCChhHH----Hhccc----cccccccC-CCCCCCC-Cccce-EE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVI----YDRGL----IGVMHDWC-EPFDTYP-RTYDL-LH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~-~vwvmnv~~~~~~~~l~~~----~erGl----ig~~~~~c-e~~~~yp-~tyDl-ih 587 (666)
-+|||.=.|.|-+|..-+++|+ -|.+..+- +|-|+.| +.|+| |-+.+.-| |...+++ .+||. ||
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd----p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKD----PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeC----CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4599999999999999999997 34333222 3444433 34555 45555544 4467787 77995 46
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--------eChhHHHHHHHHHHhcCcEEEEEeccCCCCCceEEEEE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--------DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 659 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--------d~~~~~~~~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~ 659 (666)
=--=||+.+.--+ +.+-.|+.|||||||.++=- --.+....+.+-+.+....+.....+.+ -++|
T Consensus 212 DPPRfS~AgeLYs-eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~------gv~A 284 (287)
T COG2521 212 DPPRFSLAGELYS-EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL------GVVA 284 (287)
T ss_pred CCCccchhhhHhH-HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc------ceEE
Confidence 4444666552211 57889999999999998763 2245677788888888998665554432 3666
Q ss_pred EeC
Q 005981 660 DKR 662 (666)
Q Consensus 660 ~k~ 662 (666)
+|+
T Consensus 285 ~k~ 287 (287)
T COG2521 285 VKP 287 (287)
T ss_pred ecC
Confidence 663
No 344
>PLN03075 nicotianamine synthase; Provisional
Probab=96.89 E-value=0.002 Score=68.47 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=77.5
Q ss_pred ceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHH-----hccc---cccc-cccCCCCCCCCCccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIY-----DRGL---IGVM-HDWCEPFDTYPRTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~-----erGl---ig~~-~~~ce~~~~yp~tyDl 585 (666)
.-+.|+|+|||-|++.+.+... .-+. -++.+|. +.+++.|. +.|+ +.+. +|..+... ....||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCE
Confidence 4577999999988876554431 1111 2444442 23333322 2455 3332 33333111 1268999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh---hHHHH-HHHHHHhcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---DVMDE-LQEIGKAMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~---~~~~~-~~~i~~~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
|-+. ++-.. ++-+-..+|..+.|.|||||+++++-.. ..+-. +..-.-+ +|++...-+-.++ .-.-+++++|
T Consensus 199 VF~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~-gf~~~~~~~P~~~-v~Nsvi~~r~ 274 (296)
T PLN03075 199 VFLA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR-GFEVLSVFHPTDE-VINSVIIARK 274 (296)
T ss_pred EEEe-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC-CeEEEEEECCCCC-ceeeEEEEEe
Confidence 9998 43332 2234479999999999999999998421 11111 1111111 8998777654432 3456888888
Q ss_pred C
Q 005981 662 R 662 (666)
Q Consensus 662 ~ 662 (666)
.
T Consensus 275 ~ 275 (296)
T PLN03075 275 P 275 (296)
T ss_pred e
Confidence 5
No 345
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0015 Score=62.00 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCCeEEEECCCCchhHHH--hccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 273 HHIRVVMDAGCGVASFGAY--LLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~--L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
-.+.+++|+|||.|-+... +.+. .|+|+|+.+..+.... +.+.+-.+...+...++..+-+..+.||.++.+.-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 3458899999999966532 2333 8999999998876554 45555555555666677777777799999996543
No 346
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.88 E-value=0.0018 Score=69.02 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhcc-----------CCeEEEeCCcchHHHHHHHHHHHcCCCc--
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGAPA-- 322 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvDiS~~~l~~a~~~~a~~rg~~~-- 322 (666)
..+.+.+.+++.. ....+|||.+||+|.|.....+ .+++|+|+++..+..++.+... ++...
T Consensus 32 ~~i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBG
T ss_pred HHHHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccc
Confidence 3455556666532 3456899999999988766543 2899999999877666655443 23211
Q ss_pred -eEEeecc-cCCCCC-CCCeeEEEeccccccc--c-----cC------------h-HHHHHHHHHhccCCeEEEEEEC
Q 005981 323 -MVAAFAT-RRLPYP-SQAFDLIHCSRCRINW--T-----RD------------D-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 323 -~~~~~d~-e~Lpf~-d~sFDlVv~s~~l~h~--~-----~d------------~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+...+. ...... ...||+|+++--+-.. . .+ . -.++..+.+.|++||.+++..+
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 1333332 222222 4789999986433222 0 00 1 1577889999999999888754
No 347
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.86 E-value=0.0029 Score=64.99 Aligned_cols=92 Identities=9% Similarity=0.073 Sum_probs=63.4
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHh-----------------ccc-cccccccCCCCCCCC--
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----------------RGL-IGVMHDWCEPFDTYP-- 580 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~e-----------------rGl-ig~~~~~ce~~~~yp-- 580 (666)
.||+.|||-|-=+.+|+++|++|..+-+++.. ++.+++ +|. |.++. -.|-.++
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~A----i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~---gD~f~l~~~ 118 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGVKVIGIELSEKA----VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV---ADIFNLPKI 118 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCCcEEEEecCHHH----HHHHHHHcCCCcceecccccceeccCceEEEE---ccCcCCCcc
Confidence 69999999999999999999966665555542 222211 222 33332 2222332
Q ss_pred ----CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 581 ----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 581 ----~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
..||+|.=...|.+... -.-.....-|.++|||||.+++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 47999998878877643 1236899999999999999877
No 348
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.01 Score=59.07 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=81.4
Q ss_pred cccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHH
Q 005981 240 DKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL 316 (666)
Q Consensus 240 ~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~ 316 (666)
..+.+|.+ ...++..+..-+.+...+... .-.+.++||+=+|+|.++..-+.+ .++.||.+.......+.+ ..
T Consensus 12 r~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N-~~ 87 (187)
T COG0742 12 RKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN-LK 87 (187)
T ss_pred CcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-HH
Confidence 34445543 333566777788888888741 124589999999999999988877 899999998766555543 33
Q ss_pred HcC--CCceEEeeccc-CCCCCCC--CeeEEEecccccccccCh--HHHHHH--HHHhccCCeEEEEEEC
Q 005981 317 ERG--APAMVAAFATR-RLPYPSQ--AFDLIHCSRCRINWTRDD--GILLLE--VNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 317 ~rg--~~~~~~~~d~e-~Lpf~d~--sFDlVv~s~~l~h~~~d~--~~~L~e--l~RvLkPGG~lv~st~ 377 (666)
..+ ....+...|+. -|+-... .||+|+.--- .+. .-. ...+.. -...|+|+|.+++-..
T Consensus 88 ~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 88 ALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-Ccc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 333 22333333333 2222222 4999996433 332 112 222333 4578999999999753
No 349
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.84 E-value=0.0079 Score=59.87 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=86.1
Q ss_pred hhhHhHHHHHHHHHHhccc-CCCceeeEeeccccchHHHHHH--hhCCCceEEEEeeccCC----CCCh-hHHHhccc--
Q 005981 496 AESKYWNEIIESYVRALHW-KKMKLRNVLDMRAGFGGFAAAL--IEQKFDCWVMNVVPVSG----FNTL-PVIYDRGL-- 565 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~-~~~~iRnvlD~g~G~Ggfaa~L--~~~~~~vwvmnv~~~~~----~~~l-~~~~erGl-- 565 (666)
...+.|.+++-+=...+.. ..... +++|+|+|-|-=|--| +.... +|+-+|+ -+-| .++.+=||
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~KK~~FL~~~~~~L~L~n 99 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGKKVAFLKEVVRELGLSN 99 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCchHHHHHHHHHHHhCCCC
Confidence 3446777777544444442 22211 5999999988533333 22222 3444443 2334 34444477
Q ss_pred cccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---eChhHHHHHHHHHHhcCcEEE
Q 005981 566 IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 566 ig~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---d~~~~~~~~~~i~~~l~W~~~ 642 (666)
+-++|...|. ..++..||+|-|.. -+.+..++.-+-+.|+|||.+++- +..+.+...+...+.+.++..
T Consensus 100 v~v~~~R~E~-~~~~~~fd~v~aRA-------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 100 VEVINGRAEE-PEYRESFDVVTARA-------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEEES-HHH-TTTTT-EEEEEEES-------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEEeeecc-cccCCCccEEEeeh-------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 7788999888 55779999999973 456778888889999999999985 455667778888888888876
Q ss_pred EEe
Q 005981 643 LRE 645 (666)
Q Consensus 643 ~~~ 645 (666)
...
T Consensus 172 ~v~ 174 (184)
T PF02527_consen 172 SVP 174 (184)
T ss_dssp EEE
T ss_pred eec
Confidence 543
No 350
>PHA03411 putative methyltransferase; Provisional
Probab=96.83 E-value=0.0019 Score=67.99 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=64.2
Q ss_pred eEeeccccchHHHHHHhhC--CCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCC--CCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~y--p~tyDliha~~~f~~ 594 (666)
.|||+|||.|.++..++++ +. +|+.+|. +.+++.+.++-- +.+.+.- +..+ .++||+|-++--|.+
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~-----~V~gVDisp~al~~Ar~n~~~v~~v~~D---~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPE-----KIVCVELNPEFARIGKRLLPEAEWITSD---VFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHhCcCCEEEECc---hhhhcccCCCcEEEEcCCccc
Confidence 6999999999999988775 23 5666663 678887766511 3333322 2233 378999999877765
Q ss_pred CCC-------C---------C-CHHHHHHHhhhcccCCeEEEEE
Q 005981 595 ESK-------R---------C-NMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 595 ~~~-------~---------c-~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
... + | .+...+...-++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 211 1 1 1467888999999999988885
No 351
>PRK03612 spermidine synthase; Provisional
Probab=96.80 E-value=0.0037 Score=71.79 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=73.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc-------------ccccccccCCC-CCCCCCc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG-------------LIGVMHDWCEP-FDTYPRT 582 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG-------------lig~~~~~ce~-~~~yp~t 582 (666)
+-++|||+|||.|+.+..+++.+. | ..|+-+|- +.+++.+.+.- -+.+.++.... ....++.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v--~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-V--EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-c--CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 456799999999999999988741 1 23444442 56777776521 12233332222 2234689
Q ss_pred cceEEeccccccCCCCC-C-HHHHHHHhhhcccCCeEEEEEe-----ChhHHHHHHHHHHhcCcEEE
Q 005981 583 YDLLHAAGLFSVESKRC-N-MSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 583 yDliha~~~f~~~~~~c-~-~~~~l~E~dRiLRPgG~~ii~d-----~~~~~~~~~~i~~~l~W~~~ 642 (666)
||+|-++.-........ . -++++.++.|.|||||.+++.. ..+....+.+.+++.+..+.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 99999872211100000 0 1367889999999999999952 24445566666666655443
No 352
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.77 E-value=0.0081 Score=63.78 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCC---ceEEeecccC-CC-C-CCCCeeEEEec
Q 005981 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP-Y-PSQAFDLIHCS 345 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~---~~~~~~d~e~-Lp-f-~d~sFDlVv~s 345 (666)
+++|||+=|=||.|+.+.+.. +|+.||.|...+..++.+.+. +++. ..+...|+-. +. . ..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 379999999999998875543 799999999999888765544 4443 1233334211 11 1 24689999974
Q ss_pred cccc-----ccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 346 RCRI-----NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 346 ~~l~-----h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
--.+ ....+...++..+.++|+|||.+++.+.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2221 1112334788889999999999988764
No 353
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0044 Score=64.72 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=59.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf 334 (666)
..++.+.+...- .+...|||||+|.|.++..|+++ .|+++++++.++...+...+ ......+...|+....+
T Consensus 17 ~v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 17 NVIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcc
Confidence 346677766652 23579999999999999999988 89999999976654433222 11223455556666666
Q ss_pred CCC-CeeEEEeccccccc
Q 005981 335 PSQ-AFDLIHCSRCRINW 351 (666)
Q Consensus 335 ~d~-sFDlVv~s~~l~h~ 351 (666)
+.- .++.|+++.- .++
T Consensus 91 ~~l~~~~~vVaNlP-Y~I 107 (259)
T COG0030 91 PSLAQPYKVVANLP-YNI 107 (259)
T ss_pred hhhcCCCEEEEcCC-Ccc
Confidence 643 6788886532 444
No 354
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.71 E-value=0.0065 Score=68.04 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCC---CCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTY---PRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~y---p~tyDliha~ 589 (666)
.|||+|||+|.++..|++... .|+.+|. +.+++.+.+ .|+ +.+++.-++. ++.+ ..+||+|-.+
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~-----~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAK-----SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCC-----EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 599999999999999998754 4555653 455555443 344 4455444433 2222 2579998865
Q ss_pred cccccCCCCCC-HHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..|-. ...++.++.+ |+|+|.++++-+...+.+--+.+..-.|++..
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 11222 2566666665 89999999996666654444445555677653
No 355
>PLN02476 O-methyltransferase
Probab=96.68 E-value=0.0039 Score=65.92 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=77.9
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCCC-----CCccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDTY-----PRTYD 584 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~y-----p~tyD 584 (666)
+-++||++|+++|..+.+|+. .|. |+++-.-+....-..+.+.+.|+ |-+.++- .|.++.+ ..+||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 356899999999999998876 232 33322222111222233344566 3333332 1212222 35899
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC------------hhHHHHHHH----HHHhcCcEEEEEeccC
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQE----IGKAMGWHVTLRETAE 648 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~------------~~~~~~~~~----i~~~l~W~~~~~~~~~ 648 (666)
+|-.+. ++-....++...-+.|||||.+|+.+- ......|++ +.+.=+++..+.-..+
T Consensus 197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigD 270 (278)
T PLN02476 197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGD 270 (278)
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCC
Confidence 998772 233467888888999999999998521 011123333 4555568887776654
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
.+++++|+
T Consensus 271 ------Gl~i~~K~ 278 (278)
T PLN02476 271 ------GMTICRKR 278 (278)
T ss_pred ------eeEEEEEC
Confidence 48888884
No 356
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.63 E-value=0.0065 Score=61.26 Aligned_cols=133 Identities=20% Similarity=0.378 Sum_probs=88.6
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCCC-CCh----hHHHhccc--------cccccc-c--CCCCCCCCCcc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGF-NTL----PVIYDRGL--------IGVMHD-W--CEPFDTYPRTY 583 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~~-~~l----~~~~erGl--------ig~~~~-~--ce~~~~yp~ty 583 (666)
.||.+|||+|--|++++.. +- +.--|.|.. +.+ ..+.+.|+ +-+..+ | ..+-..++.+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~----l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH----LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC----CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 7999999999988888876 32 134455532 222 33446676 333333 2 11122356899
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE------------------------eC---hhHHHHHHHHHHh
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------------------------DS---IDVMDELQEIGKA 636 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~------------------------d~---~~~~~~~~~i~~~ 636 (666)
|.|.|..++......| .+-++.+..|+|+|||.+++- |. ..-++.|.+++.+
T Consensus 104 D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 104 DAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred ceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 9999998887766554 489999999999999999994 11 1126788889998
Q ss_pred cCcEEEEEeccCCCCCceEEEEEEe
Q 005981 637 MGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 637 l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
-+.+..... + .-...++||.+|
T Consensus 183 ~GL~l~~~~--~-MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDI--D-MPANNLLLVFRK 204 (204)
T ss_pred CCCccCccc--c-cCCCCeEEEEeC
Confidence 888754221 1 224568888876
No 357
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.57 E-value=0.0066 Score=53.55 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=55.2
Q ss_pred EeeccccchH--HHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----c--cccc-cccCCCCCCCC--CccceEEec
Q 005981 522 VLDMRAGFGG--FAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----L--IGVM-HDWCEPFDTYP--RTYDLLHAA 589 (666)
Q Consensus 522 vlD~g~G~Gg--faa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----l--ig~~-~~~ce~~~~yp--~tyDliha~ 589 (666)
++|+|||.|. +.+.+...++ .+ +.++. ..++.....+. + +... .+.......+. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~--~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA--YV---VGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc--eE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 4555554432 22 22442 23344333322 1 1222 33322112233 389999 66
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
....+... ...++.++.|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433332 679999999999999999998554
No 358
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.56 E-value=0.017 Score=58.97 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=79.8
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHH-Hhccc------ccccc--------c
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI-YDRGL------IGVMH--------D 571 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~-~erGl------ig~~~--------~ 571 (666)
.|+..++...+ ..||+-|||.|--+.+|+++|++|..+-+++ ..++.+ .++++ ++.+. =
T Consensus 28 ~~~~~l~~~~~--~rvLvPgCG~g~D~~~La~~G~~VvGvDls~----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 28 EYLDSLALKPG--GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHTTSTS--EEEEETTTTTSCHHHHHHHTTEEEEEEES-H----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHhcCCCCC--CeEEEeCCCChHHHHHHHHCCCeEEEEecCH----HHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 44444443332 3499999999999999999998444444433 344444 34454 11111 1
Q ss_pred cCCCCCCCC----CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEE-EE-eCh----------hHHHHHHHHHH
Q 005981 572 WCEPFDTYP----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY-IR-DSI----------DVMDELQEIGK 635 (666)
Q Consensus 572 ~ce~~~~yp----~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i-i~-d~~----------~~~~~~~~i~~ 635 (666)
+|-.|-.++ ..||+|+=...|.... ...-+....-|.++|||||.++ ++ +.. -..++|++++.
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred EEcccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 222333333 4699999776666554 2344799999999999999943 33 111 12577888888
Q ss_pred hcCcEEEEEe
Q 005981 636 AMGWHVTLRE 645 (666)
Q Consensus 636 ~l~W~~~~~~ 645 (666)
-+|++....
T Consensus 181 -~~f~i~~l~ 189 (218)
T PF05724_consen 181 -PGFEIEELE 189 (218)
T ss_dssp -TTEEEEEEE
T ss_pred -CCcEEEEEe
Confidence 788876554
No 359
>PRK04148 hypothetical protein; Provisional
Probab=96.55 E-value=0.014 Score=55.04 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=65.5
Q ss_pred eeEeeccccchH-HHHHHhhCCCceEEEEeeccCC-CCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCCC
Q 005981 520 RNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 597 (666)
Q Consensus 520 RnvlD~g~G~Gg-faa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~~ 597 (666)
+.|+|+|||+|. +|..|.+.|+ .|+.+|. +..++-+.++|+-.+..|+.++-...=+.+|+|.+-
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~-----~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi-------- 84 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF-----DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI-------- 84 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe--------
Confidence 469999999996 9999999998 5555663 567888888998777788843322111678898887
Q ss_pred CCCHHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEEEecc
Q 005981 598 RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 647 (666)
Q Consensus 598 ~c~~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~~~~~ 647 (666)
|+ +.+....+.++++++.=++.++...
T Consensus 85 rp-----------------------p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 85 RP-----------------------PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CC-----------------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44 3455666777777777777666443
No 360
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.52 E-value=0.0021 Score=69.60 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=68.2
Q ss_pred HHHHHH--HHHHhcccCCCceeeEeeccccchH-HHHHHhhCCCceEEEEeeccC-CCCChhHHHhcc------------
Q 005981 501 WNEIIE--SYVRALHWKKMKLRNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------------ 564 (666)
Q Consensus 501 w~~~v~--~Y~~~l~~~~~~iRnvlD~g~G~Gg-faa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erG------------ 564 (666)
|.+.+- .|.+.+.-. ..-..|||||||=|| ..-+.... +. .++.+| +...++-|.+|=
T Consensus 44 wvKs~LI~~~~~~~~~~-~~~~~VLDl~CGkGGDL~Kw~~~~-i~----~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQN-RPGLTVLDLCCGKGGDLQKWQKAK-IK----HYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHCHCCCCT-TTT-EEEEET-TTTTTHHHHHHTT--S----EEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHHHHHHHHHHHhhhcc-CCCCeEEEecCCCchhHHHHHhcC-CC----EEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 654443 554432211 245679999999999 44444333 22 344455 234455555543
Q ss_pred ---c-cccccccCCCCCC-----CC---CccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEE--eChhHHHH
Q 005981 565 ---L-IGVMHDWCEPFDT-----YP---RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDE 629 (666)
Q Consensus 565 ---l-ig~~~~~ce~~~~-----yp---~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~ 629 (666)
. -...+.-| |.. ++ +.||+|=|+-.|... ...-....+|.-+.+.|||||+||.+ |...++.+
T Consensus 118 ~~~f~a~f~~~D~--f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~ 195 (331)
T PF03291_consen 118 RFDFIAEFIAADC--FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKR 195 (331)
T ss_dssp EECCEEEEEESTT--CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCC
T ss_pred cccchhheecccc--ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHH
Confidence 1 11122222 222 32 599999999665542 22333458999999999999999998 65556555
Q ss_pred HHH
Q 005981 630 LQE 632 (666)
Q Consensus 630 ~~~ 632 (666)
+++
T Consensus 196 l~~ 198 (331)
T PF03291_consen 196 LRE 198 (331)
T ss_dssp HHC
T ss_pred HHh
Confidence 655
No 361
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.51 E-value=0.012 Score=61.47 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=56.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCC--c--eEEeecccC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--A--MVAAFATRR 331 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~--~--~~~~~d~e~ 331 (666)
.++.|.+... -++...|||+|.|||.++..|.+. +|+++++++.|+.+.+.+. .|.+ . .+..+|.-.
T Consensus 46 v~~~I~~ka~----~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 46 VIDQIVEKAD----LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHhccC----CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEeccccc
Confidence 4455554443 256689999999999999999987 9999999999987665433 2333 2 233344444
Q ss_pred CCCCCCCeeEEEeccccccc
Q 005981 332 LPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 332 Lpf~d~sFDlVv~s~~l~h~ 351 (666)
.++ -.||.++++ .-.++
T Consensus 119 ~d~--P~fd~cVsN-lPyqI 135 (315)
T KOG0820|consen 119 TDL--PRFDGCVSN-LPYQI 135 (315)
T ss_pred CCC--cccceeecc-CCccc
Confidence 433 479999964 33555
No 362
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.50 E-value=0.0056 Score=59.54 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=60.7
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc----ccccccccCCCCCCCC-Cccc
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYD 584 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG----lig~~~~~ce~~~~yp-~tyD 584 (666)
.+++..+ ..|||+|||.|.++..|++++. .|+.+|. +.+++.+.++- -+.+++...+.+. ++ ..||
T Consensus 8 ~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d 79 (169)
T smart00650 8 AANLRPG--DTVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPY 79 (169)
T ss_pred hcCCCCc--CEEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCC
Confidence 3444443 3699999999999999999865 4555653 45666665542 2445555544443 23 4689
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.|-++--|... ...+..++.+ ..+.++|++++..
T Consensus 80 ~vi~n~Py~~~--~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNLPYNIS--TPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred EEEECCCcccH--HHHHHHHHhc--CCCcceEEEEEEH
Confidence 98776444321 1122333322 2256999999973
No 363
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.49 E-value=0.003 Score=63.93 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=80.7
Q ss_pred CceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhccc---cccccc-cCCCCCCC-----CCccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHD-WCEPFDTY-----PRTYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~-~ce~~~~y-----p~tyD 584 (666)
.+-++||.+|+++|--+.+|++. +..|+++.+-|-......+.+...|+ |.+.+. ..|.++.+ +.+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35678999999999988888753 23355544444222233344445576 555533 32323322 36899
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh----------------hHHHHHHHHHHhcCcEEEEEeccC
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAE 648 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~----------------~~~~~~~~i~~~l~W~~~~~~~~~ 648 (666)
+|-.++ ++-.....+..+-+.|||||.+|+.+.. .+.+-.+.|.+.=+.++.+....+
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 998773 2334567777888999999999996321 112233334555567777776654
Q ss_pred CCCCceEEEEEEeC
Q 005981 649 GPHASYRILTADKR 662 (666)
Q Consensus 649 ~~~~~e~~l~~~k~ 662 (666)
.|++++|+
T Consensus 198 ------Gl~l~~K~ 205 (205)
T PF01596_consen 198 ------GLTLARKR 205 (205)
T ss_dssp ------EEEEEEE-
T ss_pred ------eeEEEEEC
Confidence 59999985
No 364
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.49 E-value=0.015 Score=66.90 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCeEEEECCCCchhHHHhcc------------CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeec-cc-CC---CCCC
Q 005981 274 HIRVVMDAGCGVASFGAYLLP------------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TR-RL---PYPS 336 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------------~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d-~e-~L---pf~d 336 (666)
...+|||.|||+|.+...+.. .+++|+|+++..+..+.............+...+ .. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346899999999988766542 2678999998877666554433221111122111 11 01 1112
Q ss_pred CCeeEEEeccccc
Q 005981 337 QAFDLIHCSRCRI 349 (666)
Q Consensus 337 ~sFDlVv~s~~l~ 349 (666)
+.||+|+++--..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999875433
No 365
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.48 E-value=0.015 Score=59.42 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=64.9
Q ss_pred CCeEEEECCCCchhHHHh----ccC-CeEEEeCCcchHHHHHHHHHHHcCCCce---EEeecccCCC-----CCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYL----LPR-NVITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLP-----YPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L----~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~---~~~~d~e~Lp-----f~d~sFDl 341 (666)
+++.||||.=||.-+..+ .+. +|+++|+.+.....+. ++.+..|+... +.....+.|+ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 478999998888443333 333 9999999987665553 45555554332 1111222222 35689999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
++. -+|-.+-..+..++.++||+||.+++.-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 983 5664444588999999999999998873
No 366
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.44 E-value=0.0069 Score=67.24 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc----cccccc-cCCCCCCC---CCccceE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL----IGVMHD-WCEPFDTY---PRTYDLL 586 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl----ig~~~~-~ce~~~~y---p~tyDli 586 (666)
++|||+|||+|+|+.+++..|+ -.|+.+|. +.+++.+.+ .|+ +-+++. ..+.+..+ .++||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 4699999999999877665554 14556663 455555443 243 223322 21111122 2589999
Q ss_pred Eecccc-ccCC-----CCCCHHHHHHHhhhcccCCeEEEEEe------ChhHHHHHHHHHHhcCcEEEEE
Q 005981 587 HAAGLF-SVES-----KRCNMSTIMLEMDRMLRPGGHVYIRD------SIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 587 ha~~~f-~~~~-----~~c~~~~~l~E~dRiLRPgG~~ii~d------~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
-++-=+ .... ....+.+++.-.-++|+|||.++..- ..+..+.+.+.+..-+.++++.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 987332 1111 01235566677789999999999842 2345666666677766666654
No 367
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.42 E-value=0.04 Score=59.67 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec-ccCCCCCCCCeeEEEeccccc
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 349 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d-~e~Lpf~d~sFDlVv~s~~l~ 349 (666)
.++.++|||||++|.|+..|.++ .|++||..+-+ ......+ .......+ ....| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~------~~L~~~~-~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA------QSLMDTG-QVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC------HhhhCCC-CEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 45689999999999999999988 89999966521 1111111 12222222 33333 2578999997654
Q ss_pred ccccChHHHHHHHHHhccCC--eEEEEEE-CCCCCCHHHHHHHHH
Q 005981 350 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWK 391 (666)
Q Consensus 350 h~~~d~~~~L~el~RvLkPG--G~lv~st-~P~~~~~~el~~~w~ 391 (666)
..+..++.-+.+.|..| ..+++.- .|.-...++.++...
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~ 321 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLE 321 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHH
Confidence 66777777788888776 3555552 344444454444443
No 368
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.41 E-value=0.015 Score=63.00 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=86.6
Q ss_pred ccccccCCCCccccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHH
Q 005981 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315 (666)
Q Consensus 239 g~~~~Fpgggt~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a 315 (666)
|-.|.+.-...+|..+...--.+++++.. .+.+|||+=+|.|.|+..++.. .|+++|++|..+...+ +.+
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi 231 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENI 231 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHH
Confidence 33333333345555554444455666554 3589999999999999888765 5999999998776655 445
Q ss_pred HHcCCCce--EEeecccCCCCCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 316 LERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 316 ~~rg~~~~--~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+++... ...+|........+.||-|++... .+...++..+.+.|++||.+.+-+.
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred HhcCccceeeEEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 55555542 334465666554488999996543 3446788888999999999988754
No 369
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.026 Score=57.53 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcccccCCCC-CCeEEEECCCCchhHHHh----ccCCeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecc
Q 005981 256 DQYLDQIAKMVPDITWGHH-IRVVMDAGCGVASFGAYL----LPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~-~~~VLDIGCGtG~~a~~L----~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~ 329 (666)
+-+.+.+.+-+.-...... ..+++|||+|.|.=+.-| .+.+|+-+|...+-+.-. .+.+.+-++++ .+....+
T Consensus 48 e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL-~~~~~eL~L~nv~i~~~Ra 126 (215)
T COG0357 48 ELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFL-REVKKELGLENVEIVHGRA 126 (215)
T ss_pred HHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHH-HHHHHHhCCCCeEEehhhH
Confidence 3444555544432211122 579999999999544333 334888888776643222 23445667774 4444446
Q ss_pred cCCCCCCCC-eeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 330 RRLPYPSQA-FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 330 e~Lpf~d~s-FDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
|.+.-. .. ||+|+|-.+ .+...++.-+...||+||.+++.
T Consensus 127 E~~~~~-~~~~D~vtsRAv-----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 127 EEFGQE-KKQYDVVTSRAV-----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred hhcccc-cccCcEEEeehc-----cchHHHHHHHHHhcccCCcchhh
Confidence 665422 22 999985443 45567777789999999987543
No 370
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.39 E-value=0.0036 Score=63.55 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC
Q 005981 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT 578 (666)
Q Consensus 507 ~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~ 578 (666)
...+.+.++.|. .|||+|||+|-++|.|+.. |- +- -|+.++. +...+.|.++ |+ +.+.+.-+ ...
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~-~g--~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg--~~g 135 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGP-VG--RVVSVERDPELAERARRNLARLGIDNVEVVVGDG--SEG 135 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHST-TE--EEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G--GGT
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCc-cc--eEEEECccHHHHHHHHHHHHHhccCceeEEEcch--hhc
Confidence 345566677664 5999999999999988876 31 11 1334443 2223333222 44 44554443 233
Q ss_pred CC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 579 YP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 579 yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+| ..||.||+.... +.+-.++-+-||+||.+|+-
T Consensus 136 ~~~~apfD~I~v~~a~---------~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAV---------PEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESSBB---------SS--HHHHHTEEEEEEEEEE
T ss_pred cccCCCcCEEEEeecc---------chHHHHHHHhcCCCcEEEEE
Confidence 44 679999987322 23334444569999999984
No 371
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.39 E-value=0.0072 Score=66.59 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCC-CCCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-PYPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~L-pf~d~sFDlVv~s~~l 348 (666)
-+|||+.||+|..+..++.+ .|+++|+++..+...+. .++..++.. .+...|+..+ ......||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999888753 69999999987766554 334444432 3333343322 11235799998532
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEE
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+ ..+..++..+.+.+++||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 34468999999999999999999
No 372
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.25 E-value=0.015 Score=62.51 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=69.2
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
..|||+|||.|.|+.+|++++. .|+.+|. +.+++.+.+ .|+ +.++..-.+.+.. ....||+|.++
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 4699999999999999999876 5666663 456655543 354 3333332222211 22579999887
Q ss_pred cccCCCCCCHHHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~~~ 644 (666)
..|..+...+.++=.-++|++.++++-+.. ..+.++.+ -.|++...
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~ 294 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERV 294 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEE
Confidence 334444444444444478999999984444 45556555 26876543
No 373
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.18 E-value=0.027 Score=63.49 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=72.1
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--ccccc-ccCCCCCC--C-CCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMH-DWCEPFDT--Y-PRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~-~~ce~~~~--y-p~tyDliha~ 589 (666)
.|||+|||+|.++.+|++.+. .|+.+|. +.++..+.++ |+ +.+++ |+-+.+.. + +.+||+|-++
T Consensus 300 ~VLDlgcGtG~~sl~la~~~~-----~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQAA-----EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred EEEEEeccCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 599999999999999998864 5666763 5677666543 44 33332 23222222 2 2679999876
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..|..+..++..+.+ |+|++.++++ +.....+.+..+.+ -.|++..
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~ 421 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKR 421 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEE
Confidence 234445667766666 6999999999 55555666666643 3577653
No 374
>PHA03412 putative methyltransferase; Provisional
Probab=96.14 E-value=0.014 Score=60.27 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc-cccccccCCCCCCC--CCccceEEeccccccC-
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSVE- 595 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl-ig~~~~~ce~~~~y--p~tyDliha~~~f~~~- 595 (666)
.|||+|||+|.++.+++++-...-..+|+.+|- +.++..+.+.-. +.+.+. .+..+ +.+||+|-++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~---D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINA---DALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEc---chhcccccCCccEEEECCCCCCcc
Confidence 699999999999999876410000125666663 567777664321 333332 23223 4689999987555421
Q ss_pred ----CCC---CCHH-HHHHHhhhcccCCeEEEE
Q 005981 596 ----SKR---CNMS-TIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 596 ----~~~---c~~~-~~l~E~dRiLRPgG~~ii 620 (666)
+.+ ..+. .++...-|+||||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 111 2333 477777898888886 65
No 375
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.072 Score=53.82 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~ 329 (666)
+...+.+|.+...-+ ..+.+|+|+|+-.|+|++.+++. .|+|+|+.|..... + ..+...|+
T Consensus 29 Aa~KL~el~~k~~i~---~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~ 94 (205)
T COG0293 29 AAYKLLELNEKFKLF---KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDI 94 (205)
T ss_pred HHHHHHHHHHhcCee---cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeec
Confidence 334455666655322 34589999999999999988866 49999998864311 1 12222232
Q ss_pred cCCC--------CCCCCeeEEEeccc---ccccccCh-------HHHHHHHHHhccCCeEEEEEEC
Q 005981 330 RRLP--------YPSQAFDLIHCSRC---RINWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 330 e~Lp--------f~d~sFDlVv~s~~---l~h~~~d~-------~~~L~el~RvLkPGG~lv~st~ 377 (666)
..-. +....+|+|+|-.. .-++..|. ..++.-+.++|+|||.|++..+
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 1111 23345799985322 12222221 1445556789999999999875
No 376
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.023 Score=62.27 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=66.2
Q ss_pred CCCCeEEEECCCCchhHHHhccC------CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEeecccCCC---CCCCCeeEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~d~e~Lp---f~d~sFDlV 342 (666)
.++.+|||+.++.|.=+.++++. .|+++|.++.-+.... +..+..|+.+ .+...|...++ ...+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 45689999999999655555543 3699999997665443 4445556664 33333444343 222359999
Q ss_pred Ee----cccc-cc------cccC----------hHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HC----SRCR-IN------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~----s~~l-~h------~~~d----------~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+. +... ++ |... ...+|..+.++|||||.++.+|-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 94 2211 11 1111 12678889999999999999973
No 377
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.077 Score=55.49 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccC
Q 005981 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (666)
Q Consensus 259 i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~ 331 (666)
+..|..++.- .++.+||+-|.|+|+++-+++.. +++..|+...-..+|..++ ++.++.. .+..-|+..
T Consensus 94 ia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeeccc
Confidence 4455566642 45689999999999888877765 8999999765444554443 3345443 233335555
Q ss_pred CCCC--CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 332 LPYP--SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 Lpf~--d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
..|. +..+|.|+ +.+ +.+..++--++.+||.+|.-+++
T Consensus 169 ~GF~~ks~~aDaVF-----LDl-PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVF-----LDL-PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEE-----EcC-CChhhhhhhhHHHhhhcCceEEe
Confidence 4443 57889997 333 55666777777899988854444
No 378
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.00 E-value=0.059 Score=50.97 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCCchhHHHhcc-----C---CeEEEeCCcchHHHHHHHHHHHcC--CCc--eEEeecccCCCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--APA--MVAAFATRRLPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvDiS~~~l~~a~~~~a~~rg--~~~--~~~~~d~e~Lpf~d~sFD 340 (666)
.+..+|+|+|||.|.++..|+. . +|+++|..+..+..++. .+++.+ ... .....+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK-RAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH-HHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567999999999999988887 3 89999999987765553 333333 111 11111111111 145566
Q ss_pred EEEecccccccccChH-HHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 341 LIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 341 lVv~s~~l~h~~~d~~-~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+++. +|-..++. .+|+-..+ ++-.+++..+..+..
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~ 137 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHK 137 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccch
Confidence 6663 66667765 44444444 555555543444443
No 379
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.011 Score=59.76 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=63.2
Q ss_pred HHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc-----cc--cccccccCCCCC
Q 005981 505 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----GL--IGVMHDWCEPFD 577 (666)
Q Consensus 505 v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er-----Gl--ig~~~~~ce~~~ 577 (666)
|....+.+.++.+ -.||++|||.|-.+|-|++..- .|+.++...+|.-...+ |+ +.+.|+. -..
T Consensus 61 vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD--G~~ 131 (209)
T COG2518 61 VARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAEQARRNLETLGYENVTVRHGD--GSK 131 (209)
T ss_pred HHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC--ccc
Confidence 3356677777766 4599999999988888888732 55555544444333333 33 3344333 134
Q ss_pred CCC--CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 578 TYP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 578 ~yp--~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-|| .-||.|+....... ++..|+ +-|+|||.+|+=
T Consensus 132 G~~~~aPyD~I~Vtaaa~~------vP~~Ll---~QL~~gGrlv~P 168 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPE------VPEALL---DQLKPGGRLVIP 168 (209)
T ss_pred CCCCCCCcCEEEEeeccCC------CCHHHH---HhcccCCEEEEE
Confidence 466 78999998744332 234444 469999999994
No 380
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.82 E-value=0.013 Score=63.00 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=67.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCCC----CChhHHHhccc---cccccccCCCCCCCC-CccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGF----NTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~----~~l~~~~erGl---ig~~~~~ce~~~~yp-~tyDliha~~~ 591 (666)
+.|||+|||+|-....-++.|+ -.|..++.. -..+++.+.|+ |.+.+.--|.+ ..| .-.|+|-+-..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA----~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA----RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc----ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 4499999999998877777775 255555543 34477777888 77888887777 467 89999987532
Q ss_pred --cccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 592 --FSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 592 --f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
|..+... +..+|.-=||.|+|||.++=
T Consensus 137 Gy~Ll~EsM--ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESM--LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhh--hhhhhhhhhhccCCCceEcc
Confidence 2222221 24788888999999998764
No 381
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.82 E-value=0.015 Score=63.68 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~ 322 (666)
.+++.+.+.+.. .+ ..|||+-||+|.++..|++. +|+|+|+++.++..|+ +.|+.+++.+
T Consensus 184 ~l~~~~~~~l~~----~~-~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n 245 (352)
T PF05958_consen 184 KLYEQALEWLDL----SK-GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHCTT-----T-TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--S
T ss_pred HHHHHHHHHhhc----CC-CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 344444555541 22 37999999999999999987 9999999999988776 4566667654
No 382
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.087 Score=53.73 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=96.5
Q ss_pred hhhHhHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHh--hCCCceEEEEeeccCCC----CCh-hHHHhccc--c
Q 005981 496 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALI--EQKFDCWVMNVVPVSGF----NTL-PVIYDRGL--I 566 (666)
Q Consensus 496 ~d~~~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~--~~~~~vwvmnv~~~~~~----~~l-~~~~erGl--i 566 (666)
+..+.|.+++-.-........+.-.+++|+|+|-|-=|-=|+ .... +|+-+|+. +-| +++.|=|| +
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~-----~vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL-----KVTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC-----cEEEEccCchHHHHHHHHHHHhCCCCe
Confidence 445778877754444333222213569999999986555443 3322 46666651 333 44555588 8
Q ss_pred ccccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEE---EEeChhHHHHHHHHHHhcCcEEEE
Q 005981 567 GVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY---IRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 567 g~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i---i~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.++|...|.|..-++-||+|-|.. -+++..++.=.-.+||+||.++ +.-..+.+.+.++....+.+.+..
T Consensus 120 ~i~~~RaE~~~~~~~~~D~vtsRA-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 120 EIVHGRAEEFGQEKKQYDVVTSRA-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred EEehhhHhhcccccccCcEEEeeh-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 889999888874222299999873 3444555555568999999875 345667788888889999999877
Q ss_pred EeccCCCC-CceEEEEE
Q 005981 644 RETAEGPH-ASYRILTA 659 (666)
Q Consensus 644 ~~~~~~~~-~~e~~l~~ 659 (666)
+..-.-|. ..++.|+.
T Consensus 193 ~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 193 VFSLTVPELDGERHLVI 209 (215)
T ss_pred EEEeecCCCCCceEEEE
Confidence 65544442 23455443
No 383
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.71 E-value=0.039 Score=55.84 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecc-c
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFAT-R 330 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~-e 330 (666)
..+.+.+++.+. .++++||.||-|-|.....+.++ .=+.++..+.-+. -++..+-.. -.+.+. ..-- +
T Consensus 88 tpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~k-rmr~~gw~e-k~nViil~g~WeD 160 (271)
T KOG1709|consen 88 TPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLK-RMRDWGWRE-KENVIILEGRWED 160 (271)
T ss_pred hHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHH-HHHhccccc-ccceEEEecchHh
Confidence 345666666665 35589999999999887777665 3455677775332 222222111 111221 1111 1
Q ss_pred CCC-CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 331 RLP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 331 ~Lp-f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
.++ ++++.||-|+--....++ +|...+.+.+.|+|||+|.|-+-
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 222 568889999854333455 77788899999999999998664
No 384
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.023 Score=60.33 Aligned_cols=120 Identities=10% Similarity=0.100 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHH----HcCC---CceE-
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL----ERGA---PAMV- 324 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~----~rg~---~~~~- 324 (666)
...++++|..+.+.-...+...+||--|||.|.++..|+.. .+.|-++|--|+-.. .++. ..+- -.++
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeee
Confidence 45678888888775333344568999999999999988865 556667776665322 2222 1110 0000
Q ss_pred ----------------------------------Eeecc-cCCC--CCCCCeeEEEecccccccccChHHHHHHHHHhcc
Q 005981 325 ----------------------------------AAFAT-RRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLR 367 (666)
Q Consensus 325 ----------------------------------~~~d~-e~Lp--f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLk 367 (666)
+.+|. +-.+ -..++||+|+.. .++.-..+.-.+|..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc-fFIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC-FFIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE-EEeechHHHHHHHHHHHHhcc
Confidence 10110 0001 112469999865 335554666789999999999
Q ss_pred CCeEEEEEEC
Q 005981 368 AGGYFAWAAQ 377 (666)
Q Consensus 368 PGG~lv~st~ 377 (666)
|||+++=.++
T Consensus 288 ~GGvWiNlGP 297 (369)
T KOG2798|consen 288 PGGVWINLGP 297 (369)
T ss_pred CCcEEEeccc
Confidence 9999987754
No 385
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.63 E-value=0.027 Score=62.15 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=67.4
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCC-CCCccceEEeccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 591 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~-yp~tyDliha~~~ 591 (666)
+.|||++||+|.|+..|+.++. .|+.+|. +..++.+.+ .|+ +.++..-.+.+.. .-..||+|.++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~-----~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D-- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT-----QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN-- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC-----eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC--
Confidence 4699999999999999998865 4555653 455554443 233 2333322222211 11358998877
Q ss_pred cccCCCCCCH-HHHHHHhhhcccCCeEEEEEeChh-HHHHHHHHHHhcCcEEEEE
Q 005981 592 FSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 592 f~~~~~~c~~-~~~l~E~dRiLRPgG~~ii~d~~~-~~~~~~~i~~~l~W~~~~~ 644 (666)
..|..+ +.++..+. -++|++.++++-+.. ..+.++.+ -.|+++..
T Consensus 308 ----PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 ----PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred ----CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 223332 34544454 379999999996554 45667766 36887543
No 386
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.61 E-value=0.013 Score=62.44 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=38.4
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHH
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQ 311 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~ 311 (666)
+++++++.+.. .++..+||.+||.|..+..+++. .|+|+|.++.++..++
T Consensus 7 ll~Evl~~L~~----~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAI----KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCC----CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 35566666642 23469999999999999888765 6999999998886654
No 387
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.067 Score=55.50 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=73.9
Q ss_pred hcccCCCceeeEeeccccchHHHHHHh----hCCCceEEEEeeccCCCCChhHHHhc----cccc---c-ccccCCCCCC
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALI----EQKFDCWVMNVVPVSGFNTLPVIYDR----GLIG---V-MHDWCEPFDT 578 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~----~~~~~vwvmnv~~~~~~~~l~~~~er----Glig---~-~~~~ce~~~~ 578 (666)
..++..|.- |||.|.|.|.++++|+ ..| .|++.-.- +..++.|.+. |+.- . .-|-||...
T Consensus 89 ~~gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r----~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~- 160 (256)
T COG2519 89 RLGISPGSR--VLEAGTGSGALTAYLARAVGPEG-HVTTYEIR----EDFAKTARENLSEFGLGDRVTLKLGDVREGID- 160 (256)
T ss_pred HcCCCCCCE--EEEcccCchHHHHHHHHhhCCCc-eEEEEEec----HHHHHHHHHHHHHhccccceEEEecccccccc-
Confidence 456776655 9999999999999999 446 23433222 3445544432 5522 1 145555544
Q ss_pred CCCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcE
Q 005981 579 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 579 yp~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~ 640 (666)
+..||.|-.+ ..+ --.+|-.++.+|+|||.+++- -..+.++++-+.++..+|-
T Consensus 161 -~~~vDav~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 161 -EEDVDAVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred -ccccCEEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 3588887765 222 258999999999999999885 5566666666666666653
No 388
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.59 E-value=0.017 Score=61.45 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.3
Q ss_pred CccceEEeccccccC-CCCCCHHHHHHHhhhcccCCeEEEEE--eChhHHHHHHHH
Q 005981 581 RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEI 633 (666)
Q Consensus 581 ~tyDliha~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~ii~--d~~~~~~~~~~i 633 (666)
..||+|-|+-.|... .......-.|.-+-+.|||||+||=| |...++.+|+..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 349999999776542 11223347889999999999999998 666677777765
No 389
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.56 E-value=0.033 Score=55.62 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCchhHHH--hccC-CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccccc
Q 005981 274 HIRVVMDAGCGVASFGAY--LLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~--L~~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
.+++|||+|+|+|..+.. .+.. .|+..|+.|... .+..-.++.+++...+...+ .+ ..+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d--~~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHAD--LI-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeecc--cc-CCCcceeEEEeeceecC
Confidence 458999999999955443 3333 889999987543 33333455556544443322 22 36788999998876544
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEECCC
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPV 379 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st~P~ 379 (666)
- ..-..++. +.+.|+..|.-++..-|.
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 3 33345555 777777777766664443
No 390
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.055 Score=55.63 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceE-EeecccCCC---CCCCCeeEEEec
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLP---YPSQAFDLIHCS 345 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~-~~~d~e~Lp---f~d~sFDlVv~s 345 (666)
..++.+||||+-||.|+..++++ .|+|+|..-..++.. .+....... ...++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 45689999999999999999987 899999987644332 122211111 111222222 22 367899976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 346 ~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
-+++. +..+|..+..+|+++|.++.---|
T Consensus 152 vSFIS----L~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 152 VSFIS----LKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred eehhh----HHHHHHHHHHhcCCCceEEEEecc
Confidence 55444 478899999999999998877544
No 391
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.51 E-value=0.012 Score=64.50 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=59.8
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCC-CCChhHHHh----ccc-----cccccccCCCCCCCCCccceEEec
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSG-FNTLPVIYD----RGL-----IGVMHDWCEPFDTYPRTYDLLHAA 589 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~-~~~l~~~~e----rGl-----ig~~~~~ce~~~~yp~tyDliha~ 589 (666)
.++|+|||+|+...+....+ + +++.++. ...+..+-+ .++ + +.+ |+--.++-.++||.+.+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~-----~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~-~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKA-----GVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVA-DFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccCcCcCchhHHHHHhccC-----CccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehh-hhhcCCCCccccCcEEEE
Confidence 57899999999999997763 3 4555442 222222111 111 3 222 221122223999999998
Q ss_pred cccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 590 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 590 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+-.|.++. ..++.|+.|+|+|||+++.-
T Consensus 186 d~~~~~~~~---~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDL---EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcH---HHHHHHHhcccCCCceEEeH
Confidence 777766654 79999999999999999984
No 392
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.46 E-value=0.031 Score=56.66 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhc---cC-CeEEEeCCcchHHHHHHHH------HHHcCCCc---e
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PR-NVITMSIAPKDVHENQIQF------ALERGAPA---M 323 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~---~~-~V~gvDiS~~~l~~a~~~~------a~~rg~~~---~ 323 (666)
..+..+++.+. + .+....+|||||.|......+ .. ..+|+++.+.-...+.... .+..|... .
T Consensus 29 ~~~~~il~~~~-l---~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 29 EFVSKILDELN-L---TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp HHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred HHHHHHHHHhC-C---CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 44555556554 2 345799999999996543333 22 5999999986443333211 11122211 1
Q ss_pred EEeecccCCCCC---CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 324 VAAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 324 ~~~~d~e~Lpf~---d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+...|..+.++. -..-|+|++++.. +.++....|.++..-||+|-.++ ++.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 222222111110 0346999988753 33455677788888999887764 543
No 393
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.42 E-value=0.012 Score=57.75 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=54.6
Q ss_pred CceeeEeeccccchHHHHHHhhC--CCceEEEEeeccCCCCC---hhHHHhcc------ccc-cccccCCCC--CCC-CC
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNT---LPVIYDRG------LIG-VMHDWCEPF--DTY-PR 581 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~--~~~vwvmnv~~~~~~~~---l~~~~erG------lig-~~~~~ce~~--~~y-p~ 581 (666)
.+-++||++|||.|-.|.+++.. +. .|+-.|.+.. ++...++. -+. ...+|-+.. ... ++
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~-----~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA-----RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S-----EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCc-----eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 34457999999999655555555 43 3333443222 23333331 133 347897754 111 37
Q ss_pred ccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 582 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
.||+|.+++++=.. -.++.++.=++++|+|+|.+++..
T Consensus 119 ~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 119 SFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 89999999876542 345788888999999999988864
No 394
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.41 E-value=0.17 Score=55.04 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=77.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhcccccccc-ccCCCCCCCCCccceEEeccccccCCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSVESKRC 599 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~-~~ce~~~~yp~tyDliha~~~f~~~~~~c 599 (666)
.+||+||..|||.-.|+++|. .|+.||...+-+...+-+.+-.+. +-..-.+. ++.+|++-|+- .|
T Consensus 214 ~vlDLGAsPGGWT~~L~~rG~-----~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDm-------ve 280 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRRGM-----FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDM-------VE 280 (357)
T ss_pred EEEEeCCCCcHHHHHHHHcCC-----EEEEEechhcCHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEec-------cc
Confidence 599999999999999999986 677777655555556666544442 22111221 47899999982 25
Q ss_pred CHHHHHHHhhhcccCC--eEEEEE-------eChhH---HHHHHHHHH--hcCcEEEEEeccCCCCCceEEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPG--GHVYIR-------DSIDV---MDELQEIGK--AMGWHVTLRETAEGPHASYRILTADK 661 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPg--G~~ii~-------d~~~~---~~~~~~i~~--~l~W~~~~~~~~~~~~~~e~~l~~~k 661 (666)
.-..++.=|-+.|..| ..+|++ +..++ ++.|.+.+. .+.+.++++.. -|++|.|-|.-.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL---yHdReEiTv~~~ 353 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL---YHDREEVTVHLR 353 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee---ecCCceEEEEEE
Confidence 5567777788888776 578886 22222 333444333 33455565543 234555655443
No 395
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.39 E-value=0.0099 Score=60.47 Aligned_cols=123 Identities=13% Similarity=0.231 Sum_probs=85.5
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh---ccccccccccCCCCCCCC-CccceEEecccc
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD---RGLIGVMHDWCEPFDTYP-RTYDLLHAAGLF 592 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e---rGlig~~~~~ce~~~~yp-~tyDliha~~~f 592 (666)
..-.++|+||+.|..+..|...|+. .++-+|. ..|++-+.+ -+++-.+..--|.|..|- +++|||-++ +=
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve----kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-ls 146 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE----KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LS 146 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh----heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh-hh
Confidence 3456999999999999999999653 2333443 466665554 477666655556666564 999999876 22
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE----eChhH-------------------------HHHHHHHHHhcCcEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR----DSIDV-------------------------MDELQEIGKAMGWHVTL 643 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----d~~~~-------------------------~~~~~~i~~~l~W~~~~ 643 (666)
.||. -+++.-|....-+|||.|.||-+ |+... ++.+..++.+-..+...
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 2343 35678899999999999999975 43322 34455667777777776
Q ss_pred Eecc
Q 005981 644 RETA 647 (666)
Q Consensus 644 ~~~~ 647 (666)
.|++
T Consensus 225 vDtD 228 (325)
T KOG2940|consen 225 VDTD 228 (325)
T ss_pred eccc
Confidence 6664
No 396
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.33 E-value=0.042 Score=58.08 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=85.3
Q ss_pred CCceeeEeeccccchHHHH-HHhhCCCceEEEEeeccC-C----CCChhHHHhccc--c-ccccccCCCCCCCC---Ccc
Q 005981 516 KMKLRNVLDMRAGFGGFAA-ALIEQKFDCWVMNVVPVS-G----FNTLPVIYDRGL--I-GVMHDWCEPFDTYP---RTY 583 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa-~L~~~~~~vwvmnv~~~~-~----~~~l~~~~erGl--i-g~~~~~ce~~~~yp---~ty 583 (666)
.++=-.||||-||.|..-- +|.+.+.. +..|.=+| + ..-.+.|.+||| | .+.+..|=...+|- -..
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444569999999997433 23333321 11333333 2 344578999999 3 44555553333343 567
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe--ChhHHHHHHHHHHh----cCcEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD--SIDVMDELQEIGKA----MGWHVTLR 644 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d--~~~~~~~~~~i~~~----l~W~~~~~ 644 (666)
+|+-.+|||....+.-.+...|.-+.++|.|||++|.+- -.-.++.|...+.+ --|-.+.+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999998887666778889999999999999995 34456677777766 46877655
No 397
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.26 E-value=0.035 Score=55.84 Aligned_cols=128 Identities=15% Similarity=0.243 Sum_probs=69.4
Q ss_pred hhhhhHhHHHHHHHHH-Hhcc-cCCCceeeEeeccccchH----HHHHHhh--CCCceEEEEeeccCC-CCChhHHHhcc
Q 005981 494 FKAESKYWNEIIESYV-RALH-WKKMKLRNVLDMRAGFGG----FAAALIE--QKFDCWVMNVVPVSG-FNTLPVIYDRG 564 (666)
Q Consensus 494 f~~d~~~w~~~v~~Y~-~~l~-~~~~~iRnvlD~g~G~Gg----faa~L~~--~~~~vwvmnv~~~~~-~~~l~~~~erG 564 (666)
|--|...|....+... .++. -..++--+|..+||++|- .|..|.+ .+..-|-+.|...|- +..|+.|. +|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar-~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR-AG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH-HT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH-hC
Confidence 4445556655554443 2222 223355679999999995 6666666 222235567777773 56666553 23
Q ss_pred c-----------------------------------cc-cccccCCCCCCCCCccceEEeccccccCCCCCCHHHHHHHh
Q 005981 565 L-----------------------------------IG-VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEM 608 (666)
Q Consensus 565 l-----------------------------------ig-~~~~~ce~~~~yp~tyDliha~~~f~~~~~~c~~~~~l~E~ 608 (666)
+ |. ..|+.++ ....+..||+|-|..|+-.... -.-..++.-+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHHHH
Confidence 2 11 1245554 2233489999999999876543 2336899999
Q ss_pred hhcccCCeEEEEEeCh
Q 005981 609 DRMLRPGGHVYIRDSI 624 (666)
Q Consensus 609 dRiLRPgG~~ii~d~~ 624 (666)
.+.|+|||++++-...
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999996443
No 398
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.083 Score=56.93 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=65.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEeec
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA 328 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~d 328 (666)
..++.+....+++ .+.+|||+|.|.|.-...+.+. .++.++.|+ .+.+.--..+..-+... ......
T Consensus 100 asL~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 100 ASLDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccc
Confidence 4455666666554 4567999999998655444432 556666665 23222222222211110 011111
Q ss_pred ccCCCCC-CCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYP-SQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~-d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++++++ ...|++|+...-+++.... ....+..+..++.|||.|++...
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 3455554 4567887765554554222 12578889999999999999964
No 399
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.21 E-value=0.064 Score=54.75 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=67.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~ 331 (666)
+....+..-+..+ .-.++.+||-+|..+|+...++++- .|++|++|+...... ...|++|....-+. .|+ +
T Consensus 57 KLaAai~~Gl~~~-~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL-~~la~~R~NIiPIl-~DA-r 132 (229)
T PF01269_consen 57 KLAAAILKGLENI-PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL-LNLAKKRPNIIPIL-EDA-R 132 (229)
T ss_dssp HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH-HHHHHHSTTEEEEE-S-T-T
T ss_pred HHHHHHHcCcccc-CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH-HHHhccCCceeeee-ccC-C
Confidence 3344444444322 1145689999999999877777643 799999999755433 46777764222122 222 2
Q ss_pred CC----CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 332 LP----YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 332 Lp----f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.| .--+..|+|++--. +- +..+.++.++...||+||.++++-
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa--Qp-~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA--QP-DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S--ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC--Ch-HHHHHHHHHHHhhccCCcEEEEEE
Confidence 22 11258999996422 11 334577888999999999999884
No 400
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=95.05 E-value=0.071 Score=54.52 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=81.1
Q ss_pred ceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCCh----hHHHhccc---ccccc--ccCCCCCC-CCCccce
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTL----PVIYDRGL---IGVMH--DWCEPFDT-YPRTYDL 585 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l----~~~~erGl---ig~~~--~~ce~~~~-yp~tyDl 585 (666)
.-++||.+|.+.|--|..|+.- +.+- -++.++- +.+. +...+-|+ |-++. ++-|-+.. ...+||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g---~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG---RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC---eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 4667999999999877777653 1010 1444442 3333 34444566 33444 67666663 6799999
Q ss_pred EEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE---------eC-----hhHHHHHHHHHHhcCc----EEEEEecc
Q 005981 586 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---------DS-----IDVMDELQEIGKAMGW----HVTLRETA 647 (666)
Q Consensus 586 iha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~---------d~-----~~~~~~~~~i~~~l~W----~~~~~~~~ 647 (666)
|-.+ .++-+.+..+-+.-++|||||.+|+. +. ......++....-+.| +..+...
T Consensus 136 iFID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~- 208 (219)
T COG4122 136 VFID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL- 208 (219)
T ss_pred EEEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec-
Confidence 9876 23445678999999999999999985 12 2334445555554444 4443332
Q ss_pred CCCCCceEEEEEEeC
Q 005981 648 EGPHASYRILTADKR 662 (666)
Q Consensus 648 ~~~~~~e~~l~~~k~ 662 (666)
++.++++.|.
T Consensus 209 -----gDGl~v~~k~ 218 (219)
T COG4122 209 -----GDGLLLSRKR 218 (219)
T ss_pred -----CCceEEEeec
Confidence 2568998885
No 401
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.006 Score=58.55 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=42.0
Q ss_pred ccCCCCCCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 329 ~e~Lpf~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
....+|.++|.|+|+|..++.|+.-+. ..++++++|+|||||++-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 456789999999999999999986443 3899999999999999999954
No 402
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.99 E-value=0.047 Score=62.00 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=67.0
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCC-C---CChhHHHhc-cc--cccccccCCCC-CCCC
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSG-F---NTLPVIYDR-GL--IGVMHDWCEPF-DTYP 580 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~-~---~~l~~~~er-Gl--ig~~~~~ce~~-~~yp 580 (666)
+...|. .||||.||-||=..+|++. |. |+.+|. . ..|.-..+| |+ +-+.+.-...+ ..+|
T Consensus 110 ~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~------lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~ 181 (470)
T PRK11933 110 DDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGA------IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP 181 (470)
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHHcCCCCE------EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch
Confidence 445564 4999999999966666553 42 444442 2 333444455 65 33333222222 2356
Q ss_pred CccceEE----eccccccCCCC-----CC---H-------HHHHHHhhhcccCCeEEEEE----eChhHHHHHHHHHHhc
Q 005981 581 RTYDLLH----AAGLFSVESKR-----CN---M-------STIMLEMDRMLRPGGHVYIR----DSIDVMDELQEIGKAM 637 (666)
Q Consensus 581 ~tyDlih----a~~~f~~~~~~-----c~---~-------~~~l~E~dRiLRPgG~~ii~----d~~~~~~~~~~i~~~l 637 (666)
..||.|. |++.=..-++. -. + ..+|...-+.|||||++|.+ ...|.-+.|+.+++..
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 7899999 66442211110 00 1 27888889999999999997 3344444455555553
No 403
>PLN02672 methionine S-methyltransferase
Probab=94.92 E-value=0.094 Score=64.77 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=73.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhc-------------------cc---cccc-cccCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------------------GL---IGVM-HDWCEPF 576 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~er-------------------Gl---ig~~-~~~ce~~ 576 (666)
.|||+|||.|-.+.+|+++.-. -.|+.+| ++..++++.+. ++ +.++ .||.+.+
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~---~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP---SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 5999999999999999886210 1455565 34555555222 11 2333 4665544
Q ss_pred CCCCCccceEEecccc---------c-----cC--------CCCCCH-------------HHHHHHhhhcccCCeEEEEE
Q 005981 577 DTYPRTYDLLHAAGLF---------S-----VE--------SKRCNM-------------STIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 577 ~~yp~tyDliha~~~f---------~-----~~--------~~~c~~-------------~~~l~E~dRiLRPgG~~ii~ 621 (666)
......||+|-++==. + +. ...|-+ ..++.+.-++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2111259998875211 0 00 012222 47888999999999999998
Q ss_pred eChhHHHHHH-HHHHhcCcEE
Q 005981 622 DSIDVMDELQ-EIGKAMGWHV 641 (666)
Q Consensus 622 d~~~~~~~~~-~i~~~l~W~~ 641 (666)
-..+.-+.|+ +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6666667777 6888777765
No 404
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.89 E-value=0.09 Score=58.08 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCeEEEECCCCchhHHHhcc-------------------CCeEEEeCCcchHHHHHHHHHHH-------------cCCCc
Q 005981 275 IRVVMDAGCGVASFGAYLLP-------------------RNVITMSIAPKDVHENQIQFALE-------------RGAPA 322 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------------------~~V~gvDiS~~~l~~a~~~~a~~-------------rg~~~ 322 (666)
..+|+|+|||+|.++..+.. .+|.--|+-.+|.+......... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 45899999999965543311 15555677666655444332210 11111
Q ss_pred eEEee---cccCCCCCCCCeeEEEeccccccccc
Q 005981 323 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTR 353 (666)
Q Consensus 323 ~~~~~---d~e~Lpf~d~sFDlVv~s~~l~h~~~ 353 (666)
.+..+ ....--||.++.++++++.+ +||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22221 12222378999999998876 78864
No 405
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.78 E-value=0.055 Score=56.65 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 256 ~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
..+++.|.+.+.. .....|||||+|.|.++..|.+. +++++|+++......+..+. ......+...|...+.
T Consensus 16 ~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 4567777777752 24579999999999999999876 89999999876543332222 1223344555666665
Q ss_pred CCC---CCeeEEEecccccccccChHHHHHHHHHhccC
Q 005981 334 YPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (666)
Q Consensus 334 f~d---~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkP 368 (666)
... +.-..|+++.- .+. ...++.++...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 443 35566765432 222 23566666553333
No 406
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.68 E-value=0.092 Score=53.63 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=79.5
Q ss_pred ccCCCceeeEeeccccchHHHHHHhhC----CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCCC---Cccc
Q 005981 513 HWKKMKLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTYP---RTYD 584 (666)
Q Consensus 513 ~~~~~~iRnvlD~g~G~Ggfaa~L~~~----~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~yp---~tyD 584 (666)
+++.|+ .||-+||..|....++.+- |. |+.....|.....-+.++-.| .+|.++.|-..+-. |. ...|
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~-Y~~lv~~VD 145 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK-YRMLVEMVD 145 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG-GTTTS--EE
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHH-hhccccccc
Confidence 344443 4999999999988888654 64 888888887777888999998 77988888743211 21 4667
Q ss_pred eEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE----------eChhHHHHHHHHHHhcCcEEE
Q 005981 585 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 585 liha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----------d~~~~~~~~~~i~~~l~W~~~ 642 (666)
+|.++ ..++-..+-+++-++.-||+||+++|. +..++...-.+.++.-..+..
T Consensus 146 vI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 146 VIFQD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp EEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 77765 223334567888899999999999996 223343443444455556654
No 407
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.59 E-value=0.062 Score=52.52 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=42.2
Q ss_pred eEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecccCC-C-CCCCC-eeEEEec
Q 005981 277 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRL-P-YPSQA-FDLIHCS 345 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~e~L-p-f~d~s-FDlVv~s 345 (666)
.|+|+.||.|..+..++.. +|+++|+++..+.-++ ..|+..|+.. .+...|..++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999987 8999999998776665 4566666542 3444442222 1 11122 8999975
No 408
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.40 E-value=0.034 Score=56.02 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=54.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCC-CCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~-~~~yp~tyDliha~~~f 592 (666)
.|||+|||+|.++..++.+++ -.|+.++. +..+..+.+ .|+ +.+++.-+.. +......||+|-++==|
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a----~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA----AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 599999999999986665643 14555553 333333322 233 3344332222 22112579999887433
Q ss_pred ccCCCCCC-HHHHHHHhh--hcccCCeEEEEEeCh
Q 005981 593 SVESKRCN-MSTIMLEMD--RMLRPGGHVYIRDSI 624 (666)
Q Consensus 593 ~~~~~~c~-~~~~l~E~d--RiLRPgG~~ii~d~~ 624 (666)
+.. .+.++.-+. .+|+|+|.+|+....
T Consensus 132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 -----RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -----CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222 234444343 468999999998554
No 409
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.21 Score=54.89 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCeEEEECCCCchhHHHhccC-------------------------------------------CeEEEeCCcchHHHHH
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-------------------------------------------NVITMSIAPKDVHENQ 311 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------------------------------------~V~gvDiS~~~l~~a~ 311 (666)
...++|-=||+|++....+-. .++|+|+++.++..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 368999999999887544321 1679999999998886
Q ss_pred HHHHHHcCCCc--eEEeecccCCCCCCCCeeEEEecccccccccCh---H----HHHHHHHHhccCCeEEEEEEC
Q 005981 312 IQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD---G----ILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 312 ~~~a~~rg~~~--~~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d~---~----~~L~el~RvLkPGG~lv~st~ 377 (666)
..|+..|+.. .+.+.|+..++-+-+.+|+|+|+--.-.-..+. . .+.+.+.+.++--+.+++++.
T Consensus 272 -~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 -ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 5677778764 455556777764337899999874311111111 1 345567788888889999874
No 410
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.042 Score=61.91 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=52.4
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc
Q 005981 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (666)
Q Consensus 250 ~F~~g~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~ 322 (666)
.|.+.....++.+...+.+...-.....+||+-||||.++..++.. .|+|+++++.++..|. ..|..+|+.+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisN 432 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISN 432 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccc
Confidence 3444444455666666655433344578999999999999999987 9999999999887775 4666777655
No 411
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.29 E-value=0.35 Score=49.89 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=86.0
Q ss_pred eeEeeccccchHHHHHHhhCCCceEEEEeeccC-CCCChhHHHhccc-cccc-cccCCCCCC--CCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVM-HDWCEPFDT--YPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~-~~~~l~~~~erGl-ig~~-~~~ce~~~~--yp~tyDliha~~~f~~ 594 (666)
+.+||+|+-+|||--.|+++|+ --|..+| +.++|.--+.... +-++ -.....+.+ +..--|++.|+-.|-.
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA----k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA----KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC----cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh
Confidence 4599999999999999999987 3566777 4677766555544 2122 122111111 1135678998866643
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEEEE-------------------eC---hhHHHHHHHHHHhcCcEEEEEecc--CCC
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRETA--EGP 650 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~ii~-------------------d~---~~~~~~~~~i~~~l~W~~~~~~~~--~~~ 650 (666)
+..+|-.+..+|.|+|-++.- |. ..++.++.+.++.+.|.+.-..-. .|.
T Consensus 157 ------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 157 ------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred ------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 358899999999999988873 33 346788999999999998644221 122
Q ss_pred C-CceEEEEEEe
Q 005981 651 H-ASYRILTADK 661 (666)
Q Consensus 651 ~-~~e~~l~~~k 661 (666)
. .-|-++..+|
T Consensus 231 ~GNiE~l~~~~k 242 (245)
T COG1189 231 KGNIEFLLLLKK 242 (245)
T ss_pred CCcEeeeeeeec
Confidence 2 2355555554
No 412
>PRK00536 speE spermidine synthase; Provisional
Probab=94.27 E-value=0.28 Score=51.58 Aligned_cols=91 Identities=19% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh------ccc----cccccccCCCCCCCCCcc
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD------RGL----IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e------rGl----ig~~~~~ce~~~~yp~ty 583 (666)
..++-++||=+|.|-||-++.+++.+- +|+-++- +..++++.+ .++ +.++- +. .....++|
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~-----~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~f 140 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDT-----HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKY 140 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCC-----eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcC
Confidence 456789999999999999999999852 3333332 223333322 122 22221 21 11123789
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|+|-.+.+|+ +.....+.|+|+|||.++..
T Consensus 141 DVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 141 DLIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CEEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 9999986654 35567899999999999996
No 413
>PLN02823 spermine synthase
Probab=94.26 E-value=0.35 Score=52.66 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=58.4
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhcc-c---------cccccccCCC-CCCCCCccceE
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRG-L---------IGVMHDWCEP-FDTYPRTYDLL 586 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erG-l---------ig~~~~~ce~-~~~yp~tyDli 586 (666)
+-++||-+|+|.|+.++++++.+ ++--+-++.+| +..++++.+.- + +.++.+-+-. +..-++.||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD-~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDID-QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 56789999999999999998863 22223333343 45556654431 1 1222211111 11124789999
Q ss_pred EeccccccCC-CCCC---HHHHHH-HhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVES-KRCN---MSTIML-EMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~-~~c~---~~~~l~-E~dRiLRPgG~~ii~ 621 (666)
-++ ++.... ..|. -.+.+. .+.|.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 987 332111 1121 125565 789999999999875
No 414
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.89 E-value=0.15 Score=55.76 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=64.8
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc--cccccccCCCCCC-------CC-------
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDT-------YP------- 580 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl--ig~~~~~ce~~~~-------yp------- 580 (666)
|||++||+|.|+.+|++... .|+.++. +.+++.+.+. |+ +.++..-.+.+.. ++
T Consensus 201 vlDl~~G~G~~sl~la~~~~-----~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFR-----RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred EEEEeccccHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 99999999999999988743 4666663 4566555543 33 3333222222110 10
Q ss_pred --CccceEEeccccccCCCCCCHH-HHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMS-TIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~-~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~ 644 (666)
..||+|..+ ..|..+. .++. .|++|++.+|++ |+....+.++.+.+. |++...
T Consensus 276 ~~~~~d~v~lD------PPR~G~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v 332 (353)
T TIGR02143 276 KSYNCSTIFVD------PPRAGLDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVERF 332 (353)
T ss_pred ccCCCCEEEEC------CCCCCCcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEE
Confidence 126777665 3355533 3433 355699999998 555566778877755 887543
No 415
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.67 E-value=0.016 Score=51.56 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred EEECCCCchhHHHhccC-------CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc-cCCC-CCCCCeeEEEeccc
Q 005981 279 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-YPSQAFDLIHCSRC 347 (666)
Q Consensus 279 LDIGCGtG~~a~~L~~~-------~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~-e~Lp-f~d~sFDlVv~s~~ 347 (666)
||||+..|..+..+++. +++++|..+. .... .+..++.+... .+...+. +.++ ++.++||+|+.- .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~-~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQA-QEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-G 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-cccc-chhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-C
Confidence 68999999777776653 5899999874 1111 12222223222 2222222 1121 225799999953 3
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 348 l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
-|.+ +.....+..+.+.|+|||.+++-
T Consensus 78 ~H~~-~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSY-EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCH-HHHHHHHHHHHHHcCCCeEEEEe
Confidence 2333 44557888899999999999875
No 416
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.63 E-value=0.27 Score=52.53 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhhcccccCC-CCCCeEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHHHHHHHcCCCceEEee-
Q 005981 254 GADQYLDQIAKMVPDITWG-HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAF- 327 (666)
Q Consensus 254 g~~~~i~~L~~~L~~i~~g-~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~- 327 (666)
+...|+..|.++|.....+ ....++||||||... ++..+..-+++|.|+++..+..|+....+..++...+...
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4446777777777642211 124589999999873 3444444499999999999988886655542554322221
Q ss_pred --c----ccCCCCCCCCeeEEEeccccccc
Q 005981 328 --A----TRRLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 328 --d----~e~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
+ ...+-.+.+.||+.+|+--++.-
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred cCCccccchhhhcccceeeEEecCCccccC
Confidence 1 11122234689999998664443
No 417
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.63 E-value=0.07 Score=52.96 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=59.7
Q ss_pred CeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHc----CCCc-eEEeecccCCCCCCCCeeEEEecccc
Q 005981 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~r----g~~~-~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
..+.|+|+|+|.++...++. +|++++..|.-. ..|.++ |..+ .+...|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 57999999999877665554 999999998633 333333 3332 344556666556 467999975431
Q ss_pred cccccC-hHHHHHHHHHhccCCeEEEE
Q 005981 349 INWTRD-DGILLLEVNRMLRAGGYFAW 374 (666)
Q Consensus 349 ~h~~~d-~~~~L~el~RvLkPGG~lv~ 374 (666)
--+..+ ...++..+...||-+|.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 222222 23678888888888888743
No 418
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.60 E-value=0.16 Score=51.02 Aligned_cols=128 Identities=20% Similarity=0.324 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCCh----hHHH---hcc-c--ccc
Q 005981 500 YWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIY---DRG-L--IGV 568 (666)
Q Consensus 500 ~w~~~v~~Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l----~~~~---erG-l--ig~ 568 (666)
.|.+..-.|..-+. +--..-||||||||+-..|..+-=|..++..--.+. .+-+ +... +-| + |++
T Consensus 46 DWS~~yp~f~~~~~----~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~v 121 (249)
T KOG3115|consen 46 DWSKYYPDFRRALN----KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISV 121 (249)
T ss_pred cHHHhhhhhhhhcc----ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccccee
Confidence 36665555544333 112378999999999999988722333333322221 1111 1111 112 2 788
Q ss_pred ccccCCCCCCCCCccceEEeccccccC--------CCCC-CH-HHHHHHhhhcccCCeEEEEE-eChhHHHHHHHH
Q 005981 569 MHDWCEPFDTYPRTYDLLHAAGLFSVE--------SKRC-NM-STIMLEMDRMLRPGGHVYIR-DSIDVMDELQEI 633 (666)
Q Consensus 569 ~~~~ce~~~~yp~tyDliha~~~f~~~--------~~~c-~~-~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i 633 (666)
++..|-- ..|+-|-.-..+-.|-.. +++- -+ ..+|.|.-=+||+||.++.. |-.+..+-+.+.
T Consensus 122 lr~namk--~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 122 LRTNAMK--FLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred eeccchh--hccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 8888633 335655543333322211 1111 11 37888999999999999874 555544444443
No 419
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.065 Score=52.01 Aligned_cols=105 Identities=12% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCc---eEEee--c--ccCCCCCCCCeeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAF--A--TRRLPYPSQAFDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~---~~~~~--d--~e~Lpf~d~sFDlV 342 (666)
+++||++|.|--.++..|... .|...|-....+... +....++... ...+. . ..+.......||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 378999999965555544432 677777665544322 2222222000 01011 0 11112234689999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P~~~~ 382 (666)
+|+.| ..+.+.-..++..+.+.|+|.|..++..+-...+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 99998 4443555688899999999999988876533333
No 420
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.35 E-value=0.061 Score=57.10 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=65.5
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEe-ecccCC-C-CCCCCeeEEEe
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 344 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~-~d~e~L-p-f~d~sFDlVv~ 344 (666)
.++.+|||+.+|.|.=+.++++. .|++.|++..-+.... +..+..|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34578999999999655555432 8999999997665544 34445566554333 333322 1 22346999994
Q ss_pred ----cccc-cccccC----------------hHHHHHHHHHhc----cCCeEEEEEEC
Q 005981 345 ----SRCR-INWTRD----------------DGILLLEVNRML----RAGGYFAWAAQ 377 (666)
Q Consensus 345 ----s~~l-~h~~~d----------------~~~~L~el~RvL----kPGG~lv~st~ 377 (666)
+... +.-.++ ...+|..+.+.| ||||+++.+|-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 3220 110111 126788899999 99999999983
No 421
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.32 E-value=0.56 Score=49.54 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=36.1
Q ss_pred CHHHHHHHhhhcccCCeEEEE--------EeC-------hh-HHHHHHHHHHhcCcEEEEEe
Q 005981 600 NMSTIMLEMDRMLRPGGHVYI--------RDS-------ID-VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 600 ~~~~~l~E~dRiLRPgG~~ii--------~d~-------~~-~~~~~~~i~~~l~W~~~~~~ 645 (666)
++-+.|..|.++|||||++|= .+. .+ .+++|+.+++++.|++....
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 456999999999999996553 243 33 38999999999999987554
No 422
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.28 E-value=0.25 Score=51.57 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred ceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCC------CCCcc
Q 005981 518 KLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDT------YPRTY 583 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~------yp~ty 583 (666)
+-++||.+|+++|--+.+|+. .| .|+++-.-+-...-..+...+-|+ |-+.++- .|.++. +..+|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 456899999999876666654 23 234433322111122233344566 4444332 222222 34699
Q ss_pred ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEe---------Ch-----hHH----HHHHH----HHHhcCcEE
Q 005981 584 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------SI-----DVM----DELQE----IGKAMGWHV 641 (666)
Q Consensus 584 Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d---------~~-----~~~----~~~~~----i~~~l~W~~ 641 (666)
|+|-.++ ++-.....+...-+.|||||.+|+.+ .. ... +.|++ +.+.=++++
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~ 231 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999872 23334566666678999999988842 10 111 12333 455557787
Q ss_pred EEEeccCCCCCceEEEEEEeC
Q 005981 642 TLRETAEGPHASYRILTADKR 662 (666)
Q Consensus 642 ~~~~~~~~~~~~e~~l~~~k~ 662 (666)
.+....+ .+++++|.
T Consensus 232 ~llPigD------Gl~l~~k~ 246 (247)
T PLN02589 232 CMLPVGD------GITLCRRI 246 (247)
T ss_pred EEEEeCC------ccEEEEEe
Confidence 7776544 48888885
No 423
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.26 E-value=0.23 Score=53.95 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCCeEEEECCC-CchhHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEecccc
Q 005981 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (666)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~l 348 (666)
+++.+|+=+|+| .|.++..+++. +|+++|.++. ..+.|++.|....+...+.+...--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 456889999888 33667666663 9999999875 33567776655444422222222112349999843 2
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56778889999999999999765
No 424
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.16 E-value=0.13 Score=54.08 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhcc---ccccccccCCCCCCCCCc-
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRG---LIGVMHDWCEPFDTYPRT- 582 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erG---lig~~~~~ce~~~~yp~t- 582 (666)
..+.+++..+ ..|||+|||+|.++.+|++++. .|+.+|. +.+++.+.++. -+.+.+...+.++ ++.-
T Consensus 34 i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~-----~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~ 105 (272)
T PRK00274 34 IVDAAGPQPG--DNVLEIGPGLGALTEPLLERAA-----KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD-LSELQ 105 (272)
T ss_pred HHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCC-----cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC-HHHcC
Confidence 3344455444 3699999999999999999964 4555653 57777776652 2444443333332 3322
Q ss_pred cceEEec
Q 005981 583 YDLLHAA 589 (666)
Q Consensus 583 yDliha~ 589 (666)
+|.|.++
T Consensus 106 ~~~vv~N 112 (272)
T PRK00274 106 PLKVVAN 112 (272)
T ss_pred cceEEEe
Confidence 5777766
No 425
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.00 E-value=0.27 Score=53.53 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCCchhHHHhccC--------------------CeEEEeCCcchHHHHHHHHHHHc----CCCceEEee-
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAAF- 327 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiS~~~l~~a~~~~a~~r----g~~~~~~~~- 327 (666)
...-+|+|+||.+|..+..+.+. +|+--|+-.+|.+.......... .....+..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34468999999999655443211 56666887776654433222110 112222222
Q ss_pred --cccCCCCCCCCeeEEEecccccccc
Q 005981 328 --ATRRLPYPSQAFDLIHCSRCRINWT 352 (666)
Q Consensus 328 --d~e~Lpf~d~sFDlVv~s~~l~h~~ 352 (666)
....--||+++.|+++++.+ +||.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-
T ss_pred CchhhhccCCCCceEEEEEech-hhhc
Confidence 23333378999999998776 7775
No 426
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=92.97 E-value=0.18 Score=52.67 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=44.4
Q ss_pred hcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCCCccce
Q 005981 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYDL 585 (666)
Q Consensus 511 ~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp~tyDl 585 (666)
.+++..+ .+|||+|||.|.+..+|++++. .|+.++. +.+++.+.++ +-+.+.+...+.++ +| .||.
T Consensus 24 ~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~-----~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~-~~d~ 94 (258)
T PRK14896 24 YAEDTDG--DPVLEIGPGKGALTDELAKRAK-----KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP-EFNK 94 (258)
T ss_pred hcCCCCc--CeEEEEeCccCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch-hceE
Confidence 3444444 5699999999999999999965 4455553 4566666554 22444544333332 23 4788
Q ss_pred EEecc
Q 005981 586 LHAAG 590 (666)
Q Consensus 586 iha~~ 590 (666)
|.++-
T Consensus 95 Vv~Nl 99 (258)
T PRK14896 95 VVSNL 99 (258)
T ss_pred EEEcC
Confidence 88763
No 427
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=92.92 E-value=0.061 Score=54.31 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=51.5
Q ss_pred eeEeeccccchHHHHHHhh--CCCceEEEEeeccCCCCChhHHHhccc---cccccccCCCCCCCCCccceEEecccccc
Q 005981 520 RNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~--~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.+|+||-||.|.|+--+++ +++.|+..-+-|-.-.-..+-+...++ |-+++.-|..+.. ...+|-|.+.
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~----- 176 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN----- 176 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE------
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC-----
Confidence 3599999999999999998 665344443333221222222223344 5556666665554 5888976665
Q ss_pred CCCCCCHHHHHHHhhhcccCCeEEE
Q 005981 595 ESKRCNMSTIMLEMDRMLRPGGHVY 619 (666)
Q Consensus 595 ~~~~c~~~~~l~E~dRiLRPgG~~i 619 (666)
+...+ ...|-+.-+++|+||.+=
T Consensus 177 lp~~~--~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESS--LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred ChHHH--HHHHHHHHHHhcCCcEEE
Confidence 23222 367888899999999863
No 428
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.74 E-value=0.39 Score=52.23 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHc---C-C-Cc--eEEeecccC-CCCCCCCee
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER---G-A-PA--MVAAFATRR-LPYPSQAFD 340 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~r---g-~-~~--~~~~~d~e~-Lpf~d~sFD 340 (666)
+..++||-+|.|.|.-++.|.+. +|+-+|++|.|++-+........ + . .. .+...|+-+ +.-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 44679999999999999998876 89999999999876653322211 1 1 11 222223222 222346899
Q ss_pred EEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEEC
Q 005981 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 341 lVv~s~~l~h~~~d~-----~~~L~el~RvLkPGG~lv~st~ 377 (666)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.+++..-
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 9984211 1110111 2566678899999999999753
No 429
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.64 E-value=0.33 Score=48.92 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.1
Q ss_pred CeEEEECCCCchhHHHhccC----CeEEEeCCcc
Q 005981 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPK 305 (666)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~ 305 (666)
-.+.|||||-|.+...|+.. -++|++|-..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 46999999999999999876 6889988554
No 430
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.52 E-value=0.13 Score=47.92 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred eEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHH
Q 005981 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFA 315 (666)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a 315 (666)
++||+|||.|.++..++.. +|+++|.++.+...++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999988887754 69999999988776654433
No 431
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.44 E-value=0.43 Score=48.42 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=57.5
Q ss_pred EEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceE--Eee-cccCCCCCCCCeeEEEecccccc
Q 005981 278 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAF-ATRRLPYPSQAFDLIHCSRCRIN 350 (666)
Q Consensus 278 VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~--~~~-d~e~Lpf~d~sFDlVv~s~~l~h 350 (666)
|.||||--|.+..+|.++ .++++|+++.-+..|+...++ .++...+ ... +.+.++- .+..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEecCCHH
Confidence 689999999999999987 799999999999888766554 4543322 222 2444432 223788886654111
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEE
Q 005981 351 WTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 351 ~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
-....|.+....++..-.|++..
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeC
Confidence 12366666677777777888873
No 432
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.24 E-value=1.3 Score=49.18 Aligned_cols=104 Identities=15% Similarity=0.280 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCchhHH---Hhc-cC-CeEEEeCCcchHHHHHHHHHHHcCCCceEE-eecccCCC---CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGA---YLL-PR-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~---~L~-~~-~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~-~~d~e~Lp---f~d~sFDlVv 343 (666)
+++.+|||+.+-.|.=+. .|. .. .|++.|.+..-+.... +.+...|+...+. ..|...+| |+. +||-|.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 567899999999984333 333 33 7888998876554433 4555667665443 33544444 444 899998
Q ss_pred ----eccccccc-------cc----------ChHHHHHHHHHhccCCeEEEEEECC
Q 005981 344 ----CSRCRINW-------TR----------DDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 344 ----~s~~l~h~-------~~----------d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
|+...+-+ .. -..++|..+...+++||+++.+|-.
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 44421111 01 0136788888999999999999843
No 433
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=92.04 E-value=0.65 Score=50.39 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=69.0
Q ss_pred ceeeEeeccccchHHHHHHhhCCCc-eEEEEeeccCCCCChhHHHhccccccccccCCCCCCCCCccceEEeccccccCC
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~-vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.+...+|+|+|.|.....|+.+ ++ |=..|...-..-.+.+.. + -|+-|--|.-|-.-| .=|+|+...++.++.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~---~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYL---A-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhh---c-CCcceecccccccCC-CcCeEEEEeecccCC
Confidence 5677999999999999999885 32 222232221111122222 1 446666777777766 335999999999999
Q ss_pred CCCCHHHHHHHhhhcccCCeEEEEEeC
Q 005981 597 KRCNMSTIMLEMDRMLRPGGHVYIRDS 623 (666)
Q Consensus 597 ~~c~~~~~l~E~dRiLRPgG~~ii~d~ 623 (666)
|. +...+|.-...-|+|||.+|+-|.
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 75 447999999999999999999754
No 434
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.79 Score=46.29 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcC-CCceEEeecccCCC----CCCCCeeEEE
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLP----YPSQAFDLIH 343 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg-~~~~~~~~d~e~Lp----f~d~sFDlVv 343 (666)
..+.+||=+|+-+|+...++++- .+++|++|+....+.. ..+.+|. +...+. | .+.| .--+..|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R~Ni~PIL~--D-A~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKRPNIIPILE--D-ARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhCCCceeeec--c-cCCcHHhhhhcccccEEE
Confidence 45689999999999888777764 6999999998775543 5666653 222222 2 2233 1125689998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 344 ~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+--+ +- +..+.+..++...||+||+++++
T Consensus 151 ~DVA--Qp-~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 151 QDVA--QP-NQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EecC--Cc-hHHHHHHHHHHHhcccCCeEEEE
Confidence 5321 11 22346778899999999987776
No 435
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.87 E-value=0.66 Score=46.57 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchH-----H--HHHHHHHHHcCCCce-EEeecccCCC------
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDV-----H--ENQIQFALERGAPAM-VAAFATRRLP------ 333 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l-----~--~a~~~~a~~rg~~~~-~~~~d~e~Lp------ 333 (666)
+.+.+|+|+=-|.|.|++.+... .|++. .+.++ . ..+...+++....+. ......-.+.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 45689999999999999988765 45444 22222 0 111112222211110 0000111112
Q ss_pred -CCCCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 -f~d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
.+..++|.++... .+| ......+..++++.|||||.+++..|
T Consensus 125 ~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 1223444443222 233 24456889999999999999999876
No 436
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=91.64 E-value=0.44 Score=52.38 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=63.1
Q ss_pred EeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCC-CC--------------
Q 005981 522 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFD-TY-------------- 579 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~-~y-------------- 579 (666)
|||++||+|+|+.+|++... .|+.+|. +.+++.+.+ .|+ +.+++.-.+.+. ..
T Consensus 210 vLDl~~G~G~~sl~la~~~~-----~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 210 LLELYCGNGNFTLALARNFR-----RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred EEEEeccccHHHHHHHhhCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 99999999999999988643 4555553 455555544 344 333333322211 00
Q ss_pred -CCccceEEeccccccCCCCCCH-HHHHHHhhhcccCCeEEEEEeChhH-HHHHHHHHHhcCcEEEEE
Q 005981 580 -PRTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLR 644 (666)
Q Consensus 580 -p~tyDliha~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~ii~d~~~~-~~~~~~i~~~l~W~~~~~ 644 (666)
...||+|-.+ ..|-.+ +.++ ..|++|++.++++-+... .+.++.+.+ .|++...
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v 341 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKVERF 341 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEE
Confidence 0147888776 234332 3444 344558999999955544 555777764 6887543
No 437
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.51 E-value=0.038 Score=53.24 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=36.2
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
|++-|+|.|.++..|+..+ .-...+.|-.|+|||||++=|.
T Consensus 45 dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 6999999999999998764 2358999999999999999986
No 438
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.49 E-value=0.92 Score=48.09 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCeEEEECCCCchhHHHhc-c-----CCeEEEeCCcchHHHHHHHHHHHcCC--CceEEeecccCCCCCCCCeeEEEec
Q 005981 274 HIRVVMDAGCGVASFGAYLL-P-----RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCS 345 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~-~-----~~V~gvDiS~~~l~~a~~~~a~~rg~--~~~~~~~d~e~Lpf~d~sFDlVv~s 345 (666)
.+++|+=||||.=-++..+. + ..|+++|+++..+..++.-.+...++ ...+...|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999765544333 2 26889999998776665322212222 2234444555555444689999865
Q ss_pred ccccccc-cChHHHHHHHHHhccCCeEEEEEE
Q 005981 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 346 ~~l~h~~-~d~~~~L~el~RvLkPGG~lv~st 376 (666)
.. .... .+...+|..+.+.++||..+++..
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 43 3322 345699999999999999998875
No 439
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=91.38 E-value=0.39 Score=49.67 Aligned_cols=40 Identities=13% Similarity=0.349 Sum_probs=30.2
Q ss_pred CccceEEeccccc--c--CCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 RTYDLLHAAGLFS--V--ESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 ~tyDliha~~~f~--~--~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
+-||+|-|-.+=. | +++ -.+-..+.-+.|.|+|||++|+-
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEc
Confidence 6799998864421 2 333 35678899999999999999995
No 440
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=91.23 E-value=0.69 Score=48.27 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=70.6
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhh----CCCceEEEEeeccCCCCChhHHHhccc---cccc-cccCCC-CCC-C
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVM-HDWCEP-FDT-Y 579 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~----~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~-~~~ce~-~~~-y 579 (666)
-.+++..|+. |++.|.|.|++..+|+. .|. |+..-+-.--.....+-..+.|+ +.+. .|.|+. |.. .
T Consensus 34 ~~l~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 34 MRLDIRPGSR--VLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHTT--TT-E--EEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHcCCCCCCE--EEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 4466777866 99999999999998874 352 44433322111122222233466 4443 566743 532 2
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcc-cCCeEEEE-EeChhHHHHHHHHHHhcCcEE
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRML-RPGGHVYI-RDSIDVMDELQEIGKAMGWHV 641 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiL-RPgG~~ii-~d~~~~~~~~~~i~~~l~W~~ 641 (666)
...+|.|.-+ +.+. -.+|-.+.++| ||||.+.. +=..+.+.++-+.++...|.-
T Consensus 111 ~~~~DavfLD-----lp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 111 ESDFDAVFLD-----LPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp TTSEEEEEEE-----SSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cCcccEEEEe-----CCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3677876554 3332 37888999999 99999876 566777777777777778864
No 441
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=1.6 Score=44.11 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=91.9
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhC---CCceEEEEeeccCCCCChhHHHhc-cccccccccCCCCCCCCCcc----
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPFDTYPRTY---- 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~---~~~vwvmnv~~~~~~~~l~~~~er-Glig~~~~~ce~~~~yp~ty---- 583 (666)
++++.|+- ||=+||-.|.-..++.+- |. |+..-+.|.-...-|.++.+| .++.++.|- .+|.+|
T Consensus 72 ~pi~~g~~--VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA-----~~P~~Y~~~V 143 (231)
T COG1889 72 FPIKEGSK--VLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDA-----RKPEKYRHLV 143 (231)
T ss_pred CCcCCCCE--EEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeeccc-----CCcHHhhhhc
Confidence 34555543 999999999999888765 53 788888887777888999998 778888776 456444
Q ss_pred ---ceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE----------eChhHHHHHHHHHHhcCcEEEEEeccCCC
Q 005981 584 ---DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVTLRETAEGP 650 (666)
Q Consensus 584 ---Dliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~----------d~~~~~~~~~~i~~~l~W~~~~~~~~~~~ 650 (666)
|+|.++ ..++-..+-+...++.-|++||+++|. |..++..+-.+.+..=..++..+-+ =.|
T Consensus 144 e~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~-LeP 217 (231)
T COG1889 144 EKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD-LEP 217 (231)
T ss_pred ccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec-cCC
Confidence 555543 333445567888899999999998885 4555554333334444455544322 135
Q ss_pred CCceEEEEEEe
Q 005981 651 HASYRILTADK 661 (666)
Q Consensus 651 ~~~e~~l~~~k 661 (666)
.+..-++|..|
T Consensus 218 ye~DH~~i~~~ 228 (231)
T COG1889 218 YEKDHALIVAK 228 (231)
T ss_pred cccceEEEEEe
Confidence 56666666655
No 442
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.92 E-value=0.14 Score=53.95 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.4
Q ss_pred CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 ~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+||..-+..+.+|+..++.-..+|.|+-|.|||||...|.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 89999999999999988888899999999999999996664
No 443
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.68 E-value=1.1 Score=42.76 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=48.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHcCCC-ceEEeecccCCC--CCCCCeeEEEeccccccccc-----ChH---HHHHHHHH
Q 005981 296 NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSRCRINWTR-----DDG---ILLLEVNR 364 (666)
Q Consensus 296 ~V~gvDiS~~~l~~a~~~~a~~rg~~-~~~~~~d~e~Lp--f~d~sFDlVv~s~~l~h~~~-----d~~---~~L~el~R 364 (666)
+|+|+|+-+..+...+..+....... ..+...+-+++. .+.+.+|+|+.+...+.-.+ .+. .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48999999988877765555432222 223322223333 23358999997755444321 122 78899999
Q ss_pred hccCCeEEEEEECCC
Q 005981 365 MLRAGGYFAWAAQPV 379 (666)
Q Consensus 365 vLkPGG~lv~st~P~ 379 (666)
+|+|||.+.+..-++
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999996443
No 444
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=90.67 E-value=0.43 Score=49.57 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCCCcc
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp~ty 583 (666)
.+.+++..+ ..|||+|||.|.+.+.|++++.. |+.++. +.+++.+.++ +-+.+.+.-.+.++. ..|
T Consensus 22 ~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~-----v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~~~ 92 (253)
T TIGR00755 22 VEAANVLEG--DVVLEIGPGLGALTEPLLKRAKK-----VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--PDF 92 (253)
T ss_pred HHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCc-----EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--hHc
Confidence 344444333 56999999999999999999753 444443 4555555443 114445544333321 356
Q ss_pred c---eEEec
Q 005981 584 D---LLHAA 589 (666)
Q Consensus 584 D---liha~ 589 (666)
| +|.++
T Consensus 93 d~~~~vvsN 101 (253)
T TIGR00755 93 PKQLKVVSN 101 (253)
T ss_pred CCcceEEEc
Confidence 6 66554
No 445
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=1.7 Score=43.52 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeec----------ccCCCCCCC
Q 005981 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA----------TRRLPYPSQ 337 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d----------~e~Lpf~d~ 337 (666)
.+..+|||+||..|+|+....++ -|.|||+-.. .--.|... +...| .+.| ++.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga~~-i~~~dvtdp~~~~ki~e~l--p~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGATI-IQGNDVTDPETYRKIFEAL--PNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCccc-ccccccCCHHHHHHHHHhC--CCC
Confidence 45689999999999999877665 6889987532 11122211 11111 1223 567
Q ss_pred CeeEEEeccccccccc----ChH-------HHHHHHHHhccCCeEEEEEE
Q 005981 338 AFDLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 338 sFDlVv~s~~l~h~~~----d~~-------~~L~el~RvLkPGG~lv~st 376 (666)
..|+|++- +...-.. |-. .++.-....++|+|.|++-.
T Consensus 136 ~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 136 PVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 89999853 3333221 111 23344456788999999985
No 446
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=89.97 E-value=2.3 Score=44.87 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCc--h----hHHHhcc-CCeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-------------CC
Q 005981 274 HIRVVMDAGCGVA--S----FGAYLLP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-------------LP 333 (666)
Q Consensus 274 ~~~~VLDIGCGtG--~----~a~~L~~-~~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-------------Lp 333 (666)
..+..||||||-= . .+..... .+|+-+|..|.-+..++.-.+........+...|+.+ +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5678999999954 2 2222232 2899999999766554432222211112333334221 11
Q ss_pred CCCCCeeEEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 YPSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 f~d~sFDlVv~s~~l~h~~~--d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
| ++..=+++ ..++++..+ ++..++..+...|-||.+|+++..
T Consensus 148 ~-~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 F-DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred C-CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2 23344443 445444433 356999999999999999999954
No 447
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.33 E-value=0.72 Score=52.38 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcccccCC---CCCCeEEEECCCCchhHHHhcc------C--CeEEEeCCcchHHHHHHHHHHHcCCCce
Q 005981 255 ADQYLDQIAKMVPDITWG---HHIRVVMDAGCGVASFGAYLLP------R--NVITMSIAPKDVHENQIQFALERGAPAM 323 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g---~~~~~VLDIGCGtG~~a~~L~~------~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~ 323 (666)
+++|-+.+.+.|.+.... .....|+-+|+|-|-+.....+ + ++++++-.|..+...+...-..-.....
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeE
Confidence 345555555544433211 2245788999999966544332 2 7899999998664433211111122334
Q ss_pred EEeecccCCCCCCCCeeEEEecccccccccC--hHHHHHHHHHhccCCeEEEEE
Q 005981 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 324 ~~~~d~e~Lpf~d~sFDlVv~s~~l~h~~~d--~~~~L~el~RvLkPGG~lv~s 375 (666)
+...|+..++-+....|+++ +..+-.+.++ -...|.-+-+.|||+|..+=+
T Consensus 425 ii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 425 IISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 55557888875568899998 4444445333 248999999999999887544
No 448
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.29 E-value=0.36 Score=53.50 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred eEeeccccchHHHHHHhhC-CCceEEEEeeccCC-CCChhHHHh----ccc--cccccccCCCCCCCCCccceEEecccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 592 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~-~~~l~~~~e----rGl--ig~~~~~ce~~~~yp~tyDliha~~~f 592 (666)
.|||++||+|.++..++.. ++ -.|+.+|. +..++.+.+ .|+ +.+++.-++.+..-...||+|..+- |
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~----~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGV----EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence 5999999999999999765 42 13444553 344444332 244 2244444333211145799999872 3
Q ss_pred ccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 593 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.+. ..+|...-+.+||||.++++
T Consensus 135 -----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 221 35555546778999999997
No 449
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.06 E-value=1.2 Score=45.99 Aligned_cols=112 Identities=12% Similarity=0.194 Sum_probs=65.5
Q ss_pred cccccCCCCc-cccccHHHHHHHHHhhcccccCC--CCCCeEEEECCCCch----hHHHhccCCeEEEeCCcchHHHHHH
Q 005981 240 DKFKFPGGGT-QFIHGADQYLDQIAKMVPDITWG--HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQI 312 (666)
Q Consensus 240 ~~~~Fpgggt-~F~~g~~~~i~~L~~~L~~i~~g--~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiS~~~l~~a~~ 312 (666)
.+|.||.|-- -...|...|+..|.++|..-... +...++||||.|.-- ++.+....+.+|.|+++..++.|+.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3567776531 12356678888888888643211 234579999988652 2222223388999999988888876
Q ss_pred HHHHHcCCCceEE---eeccc----CCCCCCCCeeEEEeccccccc
Q 005981 313 QFALERGAPAMVA---AFATR----RLPYPSQAFDLIHCSRCRINW 351 (666)
Q Consensus 313 ~~a~~rg~~~~~~---~~d~e----~Lpf~d~sFDlVv~s~~l~h~ 351 (666)
......++...+. .-+.. .+--..+.||+++|+--+|.-
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 5554434332111 11111 111225789999998764443
No 450
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=0.54 Score=47.66 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=52.2
Q ss_pred EeeccccchHHHHHHh----hCCCceEEEEeeccCC-C--------CChhHH--------HhccccccccccCCCCCCCC
Q 005981 522 VLDMRAGFGGFAAALI----EQKFDCWVMNVVPVSG-F--------NTLPVI--------YDRGLIGVMHDWCEPFDTYP 580 (666)
Q Consensus 522 vlD~g~G~Ggfaa~L~----~~~~~vwvmnv~~~~~-~--------~~l~~~--------~erGlig~~~~~ce~~~~yp 580 (666)
.||+|.|+|-..+.++ ..|. |++.++. + |-...+ ++||-+.+.-..| .--|+
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~~g~-----~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~~ 158 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGATGG-----NVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGYA 158 (237)
T ss_pred eeecCCCccHHHHHHHHHhcCCCc-----cccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccCC
Confidence 8999999998655443 3343 3355543 1 222223 4555544443333 33355
Q ss_pred --CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 581 --RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 581 --~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
.-||-||+. .....+..|+=-.|+|||.++|-
T Consensus 159 e~a~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 889999987 23346777887889999999984
No 451
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=88.73 E-value=1.5 Score=46.69 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=72.5
Q ss_pred CCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCC-C------------CCCCCC
Q 005981 515 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCE-P------------FDTYPR 581 (666)
Q Consensus 515 ~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce-~------------~~~yp~ 581 (666)
..++-|.||=+|.|.||.++++++.+ +|-=+-+|.+| +.-++++ |..++..|.++. + ...++.
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID-~~Vi~~a--r~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEID-PAVIELA--RKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcC-HHHHHHH--HHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 45666899999999999999999996 23333344444 2333433 444555554432 0 122457
Q ss_pred ccceEEeccccccCCCCCC--HHHHHHHhhhcccCCeEEEEE-eC----hhHHHHHHHHHHhcCc
Q 005981 582 TYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR-DS----IDVMDELQEIGKAMGW 639 (666)
Q Consensus 582 tyDliha~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~ii~-d~----~~~~~~~~~i~~~l~W 639 (666)
+||+|-.+. ....+.--. -........|.|+|+|.++.. .+ .+.+..+.+.++++.+
T Consensus 149 ~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~ 212 (282)
T COG0421 149 KFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS 212 (282)
T ss_pred cCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc
Confidence 999998761 111111000 147888899999999999997 11 1334455555666633
No 452
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=87.36 E-value=1.7 Score=48.28 Aligned_cols=119 Identities=22% Similarity=0.238 Sum_probs=76.7
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCC--CCC---CCC---ccceEE
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEP--FDT---YPR---TYDLLH 587 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~--~~~---yp~---tyDlih 587 (666)
.|||+=|-+|||+-+.+.-|+. .|+.||. ...|+.+.+. |+-+.-|.|-+. |.. +-+ +||+|-
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~----~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS----EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC----ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3999999999999999998872 5666774 4566666553 553333444211 222 223 999999
Q ss_pred ecc-ccccCCCC-----CCHHHHHHHhhhcccCCeEEEEE------eChhHHHHHHHHHHhcCcEEEE
Q 005981 588 AAG-LFSVESKR-----CNMSTIMLEMDRMLRPGGHVYIR------DSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 588 a~~-~f~~~~~~-----c~~~~~l~E~dRiLRPgG~~ii~------d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.+= .|...++. -+..+++...-+||+|||.+++. +....++.|.+-+..++=..++
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEE
Confidence 752 24433322 23458889999999999999997 3344566666666666443333
No 453
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.18 E-value=4.7 Score=40.25 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=68.9
Q ss_pred eeeEeeccccchHHHHHHhhC-CCceEEEE--eeccCCCCChhHHHhccc-cccc-cccCCCCCCCCCccceEEeccccc
Q 005981 519 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMN--VVPVSGFNTLPVIYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 593 (666)
Q Consensus 519 iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmn--v~~~~~~~~l~~~~erGl-ig~~-~~~ce~~~~yp~tyDliha~~~f~ 593 (666)
...+|++|||.|-..+.|++. +-.+..|- +-|.....|++-|.-.+. |-+. -|....+. +++.|++.-+-=+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCcC
Confidence 445999999999999999887 21223322 222222456666655544 2222 22211111 24555444322111
Q ss_pred c--------------C---CC-CCCHHHHHHHhhhcccCCeEEEEEeCh-hHHHHHHHHHHhcCcEEEEEec
Q 005981 594 V--------------E---SK-RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 646 (666)
Q Consensus 594 ~--------------~---~~-~c~~~~~l~E~dRiLRPgG~~ii~d~~-~~~~~~~~i~~~l~W~~~~~~~ 646 (666)
- + .+ |.-+..+|.-++-||-|-|.|++---. ....+|-++++.-+|.+++...
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEE
Confidence 1 1 11 222456677788899999999995322 2344455578888888876543
No 454
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=87.08 E-value=2.8 Score=45.98 Aligned_cols=139 Identities=15% Similarity=0.253 Sum_probs=67.1
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccc--cccccccCCCCCC-------CC
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDT-------YP 580 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGl--ig~~~~~ce~~~~-------yp 580 (666)
+.++...+ .|||+-||.|.|+-.|+++...|..+.+++..-.+...-+...|+ +..++.-+|.+.. +.
T Consensus 191 ~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~ 267 (352)
T PF05958_consen 191 EWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFN 267 (352)
T ss_dssp HHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGT
T ss_pred HHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHH
Confidence 34444433 489999999999999999865333333332211222233334455 3334433333321 10
Q ss_pred ---------CccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEEEE---ecc
Q 005981 581 ---------RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTLR---ETA 647 (666)
Q Consensus 581 ---------~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~~~---~~~ 647 (666)
..+|+|-.+ ..|..+...+.++ |.++.=.++|+ |+....+.++.+.+ .|++... |.=
T Consensus 268 ~~~~~~~~~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~v~~~DmF 337 (352)
T PF05958_consen 268 RLKGIDLKSFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEKVQPVDMF 337 (352)
T ss_dssp TGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEEEEEE-SS
T ss_pred hhhhhhhhhcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEEEEEeecC
Confidence 145666444 3444444433332 34566678888 66666777777654 6887533 322
Q ss_pred CCCCCceEEEEEEe
Q 005981 648 EGPHASYRILTADK 661 (666)
Q Consensus 648 ~~~~~~e~~l~~~k 661 (666)
.....=|-+.+.+|
T Consensus 338 P~T~HvE~v~lL~r 351 (352)
T PF05958_consen 338 PQTHHVETVALLER 351 (352)
T ss_dssp TTSS--EEEEEEEE
T ss_pred CCCCcEEEEEEEEe
Confidence 22233455555554
No 455
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=87.07 E-value=1.4 Score=49.43 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCCCeEEEECCCCc--hhHHHhccC----CeEEEeCCcchHHHHHHHHHH--HcCCCceEE-eecccCCCCC-CCCeeEE
Q 005981 273 HHIRVVMDAGCGVA--SFGAYLLPR----NVITMSIAPKDVHENQIQFAL--ERGAPAMVA-AFATRRLPYP-SQAFDLI 342 (666)
Q Consensus 273 ~~~~~VLDIGCGtG--~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~--~rg~~~~~~-~~d~e~Lpf~-d~sFDlV 342 (666)
..+..++|+|.|.| .++..+..+ .++.||.+..|+.....+.-. +.|-...-. ..--..+|.. .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34567899988877 344444333 788899998877554433221 112111111 1112456654 3559999
Q ss_pred EecccccccccChH--HHHHH-HHHhccCCeEEEEEECCCCCCHHHHHH
Q 005981 343 HCSRCRINWTRDDG--ILLLE-VNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (666)
Q Consensus 343 v~s~~l~h~~~d~~--~~L~e-l~RvLkPGG~lv~st~P~~~~~~el~~ 388 (666)
+|++.+++...... ....+ ..+..++||++++.........+-+.+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~e 327 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTE 327 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHH
Confidence 99998888743322 33333 567889999999986433333333333
No 456
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=86.88 E-value=0.5 Score=50.59 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=49.8
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cccccccccCCCCCCCC-C--
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIGVMHDWCEPFDTYP-R-- 581 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Glig~~~~~ce~~~~yp-~-- 581 (666)
+.+.+..+. .++|++||.||++.++++..-+ .-.|+.+|. +.++..+.+| +-+-++|+....+..+. .
T Consensus 13 ~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~--~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 13 DALAIKPDG--IYVDGTFGGGGHSRAILERLGP--KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HhhCCCCCC--EEEEeCcCChHHHHHHHHhCCC--CCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 444455554 5999999999999999987200 015777775 6777777665 23667777744443332 2
Q ss_pred -ccceEEec
Q 005981 582 -TYDLLHAA 589 (666)
Q Consensus 582 -tyDliha~ 589 (666)
++|.|.++
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 78888864
No 457
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=86.72 E-value=1.4 Score=46.14 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=53.7
Q ss_pred CCCccceEEeccccc-cCCCCCCHHHHHHHhhhcccCCeEEEEEeChh----------------HHHHHHHHHHhcCcEE
Q 005981 579 YPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHV 641 (666)
Q Consensus 579 yp~tyDliha~~~f~-~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~~----------------~~~~~~~i~~~l~W~~ 641 (666)
.|+.||.|-+...+. ...++-.....|..|-+.|||||++|+-.-.+ ..+.|++.++.-...+
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEE
Confidence 356799998775443 24455556689999999999999999962211 1466777788888887
Q ss_pred EEEeccCCC--CCceEEEEEEe
Q 005981 642 TLRETAEGP--HASYRILTADK 661 (666)
Q Consensus 642 ~~~~~~~~~--~~~e~~l~~~k 661 (666)
......... +...-+|+|||
T Consensus 235 ~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 235 EDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEEG-TTTB---EEEEEEEEE
T ss_pred EecccccCcCCCCcEEEEEEeC
Confidence 766542222 34455666666
No 458
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.47 E-value=2.4 Score=42.99 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=70.7
Q ss_pred eEeeccccchHHHHHHhhC-C--CceEEEEeeccCCCCChhHHHhcccc---ccccccCCCCCCCCCccceEEecccccc
Q 005981 521 NVLDMRAGFGGFAAALIEQ-K--FDCWVMNVVPVSGFNTLPVIYDRGLI---GVMHDWCEPFDTYPRTYDLLHAAGLFSV 594 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~-~--~~vwvmnv~~~~~~~~l~~~~erGli---g~~~~~ce~~~~yp~tyDliha~~~f~~ 594 (666)
.|+|+||--||+.-.++++ | ..|...-+.|++....+.++ +|-| .+....-|.+.. ...|+|-++..=..
T Consensus 48 ~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~l~~--~~~DvV~sD~ap~~ 123 (205)
T COG0293 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEALGG--APVDVVLSDMAPNT 123 (205)
T ss_pred EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHHcCC--CCcceEEecCCCCc
Confidence 4999999999998877776 2 12677777777642222211 1111 000111111111 33687776533211
Q ss_pred CCCC-------CCHHHHHHHhh-hcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccC-CCCCceEEEEEE
Q 005981 595 ESKR-------CNMSTIMLEMD-RMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAE-GPHASYRILTAD 660 (666)
Q Consensus 595 ~~~~-------c~~~~~l~E~d-RiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~-~~~~~e~~l~~~ 660 (666)
.+.+ -.+..+.+||- ++|+|||.|+.. +..+.+..+++..+.+ .+..... -....|-.++|.
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v----~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKV----KIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhcee----EEecCccccCCCceEEEEEe
Confidence 1111 01124555555 699999999996 4455566666655544 3332221 124568888886
Q ss_pred e
Q 005981 661 K 661 (666)
Q Consensus 661 k 661 (666)
+
T Consensus 200 ~ 200 (205)
T COG0293 200 G 200 (205)
T ss_pred c
Confidence 5
No 459
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=86.28 E-value=1.7 Score=42.86 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHhcccCCCceeeEeeccccchHHH--HHHhhCCCc-----eEEEEeeccCC-CCChhHHHh----ccc---cccccccC
Q 005981 509 VRALHWKKMKLRNVLDMRAGFGGFA--AALIEQKFD-----CWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWC 573 (666)
Q Consensus 509 ~~~l~~~~~~iRnvlD~g~G~Ggfa--a~L~~~~~~-----vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~c 573 (666)
.++-+++.+. .|+|==||+|++. |+|...++. . -..+...|. +.++..+.+ .|+ |.+...-.
T Consensus 21 l~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 21 LNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDIN-ELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccc-cccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 4444565554 4999999999987 445444331 0 011234442 344444433 243 33333222
Q ss_pred CCCCCCCCccceEEeccccccCCCCCCH--------HHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 574 EPFDTYPRTYDLLHAAGLFSVESKRCNM--------STIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 574 e~~~~yp~tyDliha~~~f~~~~~~c~~--------~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
..++..+.++|.|-++- =++.|... ..++.|+.|+|+|...+++++..+.. +.+....|+...
T Consensus 98 ~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~----~~~~~~~~~~~~ 168 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELE----KALGLKGWRKRK 168 (179)
T ss_dssp GGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHH----HHHTSTTSEEEE
T ss_pred hhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHhcchhhceEE
Confidence 33332347999999983 33334332 37789999999996666666665543 333444776553
No 460
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=86.18 E-value=0.57 Score=49.96 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCccceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeCh
Q 005981 580 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 624 (666)
Q Consensus 580 p~tyDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~~ 624 (666)
+..||+|.|..+|.+... -.-..++..+.+.|+|||++++-...
T Consensus 221 ~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 389999999999877643 23469999999999999999886543
No 461
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=86.11 E-value=0.6 Score=46.56 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=54.2
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHh----ccc---cccccccCCCC-CCC--C-CccceEEe
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD----RGL---IGVMHDWCEPF-DTY--P-RTYDLLHA 588 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~e----rGl---ig~~~~~ce~~-~~y--p-~tyDliha 588 (666)
.|||++||+|++|..++.+|+. .|+-+|. +..++.+.+ -|+ +.++..-...+ ..+ . ..||+|-.
T Consensus 52 ~vLDLfaGsG~lglea~srga~----~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK----VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4999999999999999999863 3555553 233333322 122 22332222111 111 1 24788777
Q ss_pred ccccccCCCCCCHHHHHHHh--hhcccCCeEEEEEeCh
Q 005981 589 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 624 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~ii~d~~ 624 (666)
+==|.. -..+.++.-+ ..+|+++|.+|+....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 644432 1233333322 4689999999997543
No 462
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=85.76 E-value=2.6 Score=46.16 Aligned_cols=119 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred HHHHHHhhcccccCC-CCCCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHcCCCc-eEEee
Q 005981 258 YLDQIAKMVPDITWG-HHIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g-~~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~rg~~~-~~~~~ 327 (666)
+..+...+++-+.-+ .++.+|||+.+-.|+=+..|.+. .|++=|+++.-++....+. .....+. .+...
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNH 216 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecc
Confidence 345556666543333 56689999999999777666543 5778888876555444343 2111111 11111
Q ss_pred cccCCC---------CCCCCeeEEEecc-c-----------ccc--ccc-------Ch-HHHHHHHHHhccCCeEEEEEE
Q 005981 328 ATRRLP---------YPSQAFDLIHCSR-C-----------RIN--WTR-------DD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 328 d~e~Lp---------f~d~sFDlVv~s~-~-----------l~h--~~~-------d~-~~~L~el~RvLkPGG~lv~st 376 (666)
++...| .....||-|.|-- | +.. |.. .+ -.+|.+-.++||+||.++.||
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 222111 2345699998621 0 000 110 11 167888899999999999997
Q ss_pred C
Q 005981 377 Q 377 (666)
Q Consensus 377 ~ 377 (666)
-
T Consensus 297 C 297 (375)
T KOG2198|consen 297 C 297 (375)
T ss_pred c
Confidence 3
No 463
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.55 E-value=0.48 Score=43.25 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=27.3
Q ss_pred CeeEEEecccccccc----cC--hHHHHHHHHHhccCCeEEEEEE
Q 005981 338 AFDLIHCSRCRINWT----RD--DGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 338 sFDlVv~s~~l~h~~----~d--~~~~L~el~RvLkPGG~lv~st 376 (666)
.||+|.|..+ .-|. .| ...+++.+++.|+|||.|++--
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899998665 3332 22 3379999999999999999973
No 464
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=85.41 E-value=3.2 Score=44.90 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred CceeeEeeccccchHH--HHHHhhCCCceEEEEeeccCCCCChhHHHh----ccc---cccccccCCCCCCCCCccceEE
Q 005981 517 MKLRNVLDMRAGFGGF--AAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLH 587 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggf--aa~L~~~~~~vwvmnv~~~~~~~~l~~~~e----rGl---ig~~~~~ce~~~~yp~tyDlih 587 (666)
-.-|.|||+|||.|-. -|+.+... .|-.+++.+|.+.|.. ..| |.|.-+--|... .|.-.|+|-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~------~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK------KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc------eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEE
Confidence 3446699999999963 44444332 3555666677665532 333 667766666665 589999998
Q ss_pred eccccccCCCCCCHHHHHHHhhhcccCCeEEEEE--e-----ChhHHHHHHHHHHhcCcE
Q 005981 588 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--D-----SIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 588 a~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~--d-----~~~~~~~~~~i~~~l~W~ 640 (666)
+--+=.++-+. .|-..-+...|.|+|.|..+=+ | =.+..--++..-+++-|-
T Consensus 249 SEPMG~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 249 SEPMGYMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred eccchhhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 75322222221 2223334456999999998765 1 122334455566666664
No 465
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=85.26 E-value=0.94 Score=41.26 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCchhHHHhccC--CeEEEeC
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSI 302 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDi 302 (666)
......|||||+|.+.--|... .-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 4567999999999888777765 5566664
No 466
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=85.25 E-value=3.3 Score=43.07 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CceeeEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhc------c----ccccccccCCC-CCCCCC-ccc
Q 005981 517 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------G----LIGVMHDWCEP-FDTYPR-TYD 584 (666)
Q Consensus 517 ~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~er------G----lig~~~~~ce~-~~~yp~-tyD 584 (666)
.+-++||=+|.|.|+.++.|++.+ ++--+-++.+| +..++++.+- + -+-+.++-+-. +...++ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 368899999999999999999885 12223344444 2344444321 1 12223222111 233566 999
Q ss_pred eEEeccccccCCCC--CCHHHHHHHhhhcccCCeEEEEE-----eChhHHHHHHHHHHhcCcEEEEEeccCCC--CCceE
Q 005981 585 LLHAAGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETAEGP--HASYR 655 (666)
Q Consensus 585 liha~~~f~~~~~~--c~~~~~l~E~dRiLRPgG~~ii~-----d~~~~~~~~~~i~~~l~W~~~~~~~~~~~--~~~e~ 655 (666)
+|-.+ ++.-.... .--...+..+.|.|+|||.+++. ...+....+.+.+++..-.+.....---. ..-.-
T Consensus 153 vIi~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~ 231 (246)
T PF01564_consen 153 VIIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWS 231 (246)
T ss_dssp EEEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEE
T ss_pred EEEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeeccccee
Confidence 99875 33211110 11148889999999999999996 23345666666777776676654332111 12235
Q ss_pred EEEEEeC
Q 005981 656 ILTADKR 662 (666)
Q Consensus 656 ~l~~~k~ 662 (666)
++++.|.
T Consensus 232 ~~~~s~~ 238 (246)
T PF01564_consen 232 FASASKD 238 (246)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 6666664
No 467
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=85.01 E-value=3.6 Score=42.99 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=44.7
Q ss_pred CCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCCCCCCCeeEEEeccc
Q 005981 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (666)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lpf~d~sFDlVv~s~~ 347 (666)
.+.+|+|||||.=-++..+... .++|.|++..+++-.. .+....+.+..+...|...-+ +....|+++..-.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 4689999999999888766544 8999999987765443 333444555555554433322 3567899986544
No 468
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=84.99 E-value=4.3 Score=44.02 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.1
Q ss_pred CCceeeEeeccccchHHHHHHhhC
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIEQ 539 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~~ 539 (666)
.+.-..|||+|||.|+.+..|+.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~ 135 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVH 135 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhh
Confidence 344456999999999998888765
No 469
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=84.91 E-value=1.3 Score=47.49 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred cccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhc----cc---cccccccCCCCCCCCCcc
Q 005981 512 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTY 583 (666)
Q Consensus 512 l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~er----Gl---ig~~~~~ce~~~~yp~ty 583 (666)
+++..+. .|||+|||.|.+..+|++.+. .|+.+|. +.+++.+.++ |+ +.++++....+. + ..|
T Consensus 32 ~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~-----~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~-~~~ 102 (294)
T PTZ00338 32 AAIKPTD--TVLEIGPGTGNLTEKLLQLAK-----KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F-PYF 102 (294)
T ss_pred cCCCCcC--EEEEecCchHHHHHHHHHhCC-----cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c-ccc
Confidence 3444443 599999999999999999865 3455553 4556555442 32 445554432221 1 468
Q ss_pred ceEEec
Q 005981 584 DLLHAA 589 (666)
Q Consensus 584 Dliha~ 589 (666)
|+|.++
T Consensus 103 d~VvaN 108 (294)
T PTZ00338 103 DVCVAN 108 (294)
T ss_pred CEEEec
Confidence 888876
No 470
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.69 E-value=6 Score=41.33 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=62.3
Q ss_pred HHHhcccCCCceeeEeeccccchHHHHHHhhC-CCceEEEEeeccCC---CCChhHHHhccc----------cccccccC
Q 005981 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG---FNTLPVIYDRGL----------IGVMHDWC 573 (666)
Q Consensus 508 Y~~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~-~~~vwvmnv~~~~~---~~~l~~~~erGl----------ig~~~~~c 573 (666)
|.++++.+. +.+|||.+|+|+|--|+..+.. +. ||+-.|. ...|+.+.+++. +-.--+|-
T Consensus 77 ~~~~~g~~~-~~~~vlELGsGtglvG~~aa~~~~~-----~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg 150 (248)
T KOG2793|consen 77 TATLIGFKT-KYINVLELGSGTGLVGILAALLLGA-----EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWG 150 (248)
T ss_pred hhccccccc-cceeEEEecCCccHHHHHHHHHhcc-----eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecC
Confidence 445555443 7889999999988555444443 33 4443332 234444443332 22225676
Q ss_pred CC--CCCCCCc-cceEEeccccccCCCCCCHHHHHHHhhhcccCCeEEEE
Q 005981 574 EP--FDTYPRT-YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 620 (666)
Q Consensus 574 e~--~~~yp~t-yDliha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii 620 (666)
++ .+.++.. +|+|-++++|-..+..|.+..+|. -.|--+|.+++
T Consensus 151 ~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla---~ll~~~~~i~l 197 (248)
T KOG2793|consen 151 NALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLA---FLLAKDGTIFL 197 (248)
T ss_pred CcccHhhccCCcccEEEEeeeeecCCcchhHHHHHH---HHHhcCCeEEE
Confidence 66 3446555 999999999988887765554444 45667775555
No 471
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.56 E-value=1.2 Score=43.50 Aligned_cols=114 Identities=20% Similarity=0.433 Sum_probs=70.5
Q ss_pred eeEeeccccchHHHHHHhhCCCc---eEEEEeeccCCCCChhHHHhccccccc--------cccCCCCCC-CCCccceEE
Q 005981 520 RNVLDMRAGFGGFAAALIEQKFD---CWVMNVVPVSGFNTLPVIYDRGLIGVM--------HDWCEPFDT-YPRTYDLLH 587 (666)
Q Consensus 520 RnvlD~g~G~Ggfaa~L~~~~~~---vwvmnv~~~~~~~~l~~~~erGlig~~--------~~~ce~~~~-yp~tyDlih 587 (666)
|-||.+|+|+-|.|.-|+...++ ||+..--.. +-..++-|.-+....-+ |.| .+.+. --.|||+|-
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~-svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEE-SVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHH-HHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEE
Confidence 56999999999999999876443 444211110 12445555555531111 222 11111 127999999
Q ss_pred eccccccCCCCCCH-----HHHHHHhhhcccCCeEEEEEeCh--hHHHHHHHHHHhcCcEEEE
Q 005981 588 AAGLFSVESKRCNM-----STIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 588 a~~~f~~~~~~c~~-----~~~l~E~dRiLRPgG~~ii~d~~--~~~~~~~~i~~~l~W~~~~ 643 (666)
|+ .|.+ ++++.-|.+.|||.|..++..+. +.+++....+......+..
T Consensus 109 aA--------DClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AA--------DCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred ec--------cchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 98 4543 48899999999999999886442 4566666666666655544
No 472
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.40 E-value=13 Score=38.27 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~Lp 333 (666)
.+..+++.+.. ..++.||||-.|.+..+|.+. .+++.|+++.-+..|..++.+.. +...+.+.-.+.++
T Consensus 6 RL~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~ 78 (226)
T COG2384 6 RLTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc
Confidence 45566666652 244999999999999999876 78999999999888876665544 33323222123333
Q ss_pred -CC-CCCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 005981 334 -YP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 334 -f~-d~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~s 375 (666)
+. +..+|+|+...+.-. -....|.+-...|+.==.+++.
T Consensus 79 ~l~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 79 VLELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ccCccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEEC
Confidence 33 347999886554111 1236677777777644456664
No 473
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.19 E-value=4.1 Score=44.43 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=72.7
Q ss_pred HhcccCCCceeeEeeccccchHHHHHHhhCCCceEEEEeeccCC-CCChhHHHhccc--cc--cc--cccCCC-CCCCC-
Q 005981 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL--IG--VM--HDWCEP-FDTYP- 580 (666)
Q Consensus 510 ~~l~~~~~~iRnvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~~~l~~~~erGl--ig--~~--~~~ce~-~~~yp- 580 (666)
++-.+..|.. |||==||+|||.-...=.|+ +|+..|- ..|+.-| ..+| .+ -| +.-|.+ ...+|
T Consensus 191 NLa~v~~G~~--vlDPFcGTGgiLiEagl~G~-----~viG~Did~~mv~ga-k~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 191 NLARVKRGEL--VLDPFCGTGGILIEAGLMGA-----RVIGSDIDERMVRGA-KINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHhccccCCE--eecCcCCccHHHHhhhhcCc-----eEeecchHHHHHhhh-hhhhhhhCcCceeEEEecccccCCCCC
Confidence 3333455544 99999999999877666676 7777764 3444332 2223 21 11 222222 22266
Q ss_pred CccceEEeccccccCC--CCCC----HHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEEE
Q 005981 581 RTYDLLHAAGLFSVES--KRCN----MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 581 ~tyDliha~~~f~~~~--~~c~----~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~~ 643 (666)
.++|.|-++-=..... .+-. +.++|-++.++|++||++++.-+.....++.+ +.+++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~----~~f~v~~ 327 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE----LGFKVLG 327 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh----cCceEEE
Confidence 4699999874333211 1222 45888999999999999999766444444444 4555543
No 474
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=83.88 E-value=2.2 Score=43.58 Aligned_cols=112 Identities=15% Similarity=0.286 Sum_probs=73.9
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhccccccccccCCC-CCCCC-CccceEEeccccccCCCC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP-FDTYP-RTYDLLHAAGLFSVESKR 598 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGlig~~~~~ce~-~~~yp-~tyDliha~~~f~~~~~~ 598 (666)
.+||+||=....+.. ..+ | .+|+++|-..+-+-|.+.-+ .|. .++=+ ..||+|.++-|+....+.
T Consensus 54 rlLEVGals~~N~~s--~~~---~-fdvt~IDLns~~~~I~qqDF-------m~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNACS--TSG---W-FDVTRIDLNSQHPGILQQDF-------MERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred eEEeecccCCCCccc--ccC---c-eeeEEeecCCCCCCceeecc-------ccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 589999975543322 222 3 35999986444444444333 222 23223 689999999888876654
Q ss_pred CCHHHHHHHhhhcccCCeE-----EEEE-------eChh-HHHHHHHHHHhcCcEEEEEe
Q 005981 599 CNMSTIMLEMDRMLRPGGH-----VYIR-------DSID-VMDELQEIGKAMGWHVTLRE 645 (666)
Q Consensus 599 c~~~~~l~E~dRiLRPgG~-----~ii~-------d~~~-~~~~~~~i~~~l~W~~~~~~ 645 (666)
-.--+.+.-+.+.|||+|. ++|- .+.. ..+.++.|+.+|+.......
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 3345888999999999999 5553 1111 25789999999999876553
No 475
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.80 E-value=1.5 Score=43.86 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred eEeeccccchHHHHHHhhCC-CceEEEEeeccCCCCChhHH---HhccccccccccCCCCCCCCCccceEEeccccccCC
Q 005981 521 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVSGFNTLPVI---YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 596 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~-~~vwvmnv~~~~~~~~l~~~---~erGlig~~~~~ce~~~~yp~tyDliha~~~f~~~~ 596 (666)
.|+|+|||+|.+|-+.+-.| ..|..+.+-| ..++++ .++++ |-+---|-..+.+..-+|.+-.+==|....
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~----~a~ei~r~N~~~l~-g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDP----EALEIARANAEELL-GDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCH----HHHHHHHHHHHhhC-CceEEEEcchhhcCCccceEEECCCCcccc
Confidence 49999999999876666665 2233333333 344333 33433 212112222455667888887777777665
Q ss_pred CCCCHHHHH--HHhhhcccCCeEEEEE-eChhHHHHHHHHHHhcCcEEE
Q 005981 597 KRCNMSTIM--LEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 597 ~~c~~~~~l--~E~dRiLRPgG~~ii~-d~~~~~~~~~~i~~~l~W~~~ 642 (666)
..-+.+.+. +|+- -+|.+ .+....+-+++.+......+.
T Consensus 123 rhaDr~Fl~~Ale~s-------~vVYsiH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 123 RHADRPFLLKALEIS-------DVVYSIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred ccCCHHHHHHHHHhh-------heEEEeeccccHHHHHHHHHhcCCeEE
Confidence 556666544 3433 23333 444456666666666654443
No 476
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.37 E-value=5.9 Score=41.39 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCeEEEECCCCchhHHHhcc---CCeEEEeCCcchH--HHHH-H-HHHH-HcCCCceEEeecc-cCC--CCCCCC-eeEE
Q 005981 275 IRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDV--HENQ-I-QFAL-ERGAPAMVAAFAT-RRL--PYPSQA-FDLI 342 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~---~~V~gvDiS~~~l--~~a~-~-~~a~-~rg~~~~~~~~d~-e~L--pf~d~s-FDlV 342 (666)
..+||++|.|+|..+...+. .+|...|...... .... . +.+. ..|....+...+- ..+ .+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 46799999999954443332 2666666654321 1110 0 1111 1121222222211 111 111223 9999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 343 v~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+++.++.+- ...+.++.-+...|-.+|.+++.++
T Consensus 167 lasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999986665 6667888889999999997777754
No 477
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=83.22 E-value=0.46 Score=50.19 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHhhc-ccccCCCCCCeEEEECCCCchhHHHhccC---CeEEEeCCcchHHH-----------HHHHHHHH
Q 005981 253 HGADQYLDQIAKMV-PDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHE-----------NQIQFALE 317 (666)
Q Consensus 253 ~g~~~~i~~L~~~L-~~i~~g~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiS~~~l~~-----------a~~~~a~~ 317 (666)
.++-..++.+.+.+ .++. ..+++|||+|||.|.-+...... .+...|++..-+.. +..+....
T Consensus 96 ecS~dl~~~l~~e~~~~~~--~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~ 173 (282)
T KOG2920|consen 96 ECSVDLLPYLKEEIGAQMS--FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN 173 (282)
T ss_pred ecHHHHHHHHHHHhhhheE--ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhc
Confidence 34444455555443 2211 34589999999999555444322 45555655432200 00011111
Q ss_pred cCCCceEEeecccCCCC-CCC--CeeEEEecccccccccChHHH-HHHHHHhccCCeEEEEEE
Q 005981 318 RGAPAMVAAFATRRLPY-PSQ--AFDLIHCSRCRINWTRDDGIL-LLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 318 rg~~~~~~~~d~e~Lpf-~d~--sFDlVv~s~~l~h~~~d~~~~-L~el~RvLkPGG~lv~st 376 (666)
......... ...++-+ ..+ .||+|.++..+... .....+ +......++++|.++++.
T Consensus 174 ~~~~~i~~s-~l~dg~~~~t~~~~ydlIlsSetiy~~-~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 174 HKVDEILNS-LLSDGVFNHTERTHYDLILSSETIYSI-DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccceecccc-ccccchhhhccccchhhhhhhhhhhCc-chhhhhHhhhhhhcCCccchhhhhh
Confidence 111000000 0001111 112 68888877765555 333333 666778888999887764
No 478
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=82.64 E-value=0.23 Score=44.11 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=33.1
Q ss_pred eeccccchHHHHHHhhCCCceEEEEeeccCC-C---CChhHHHhccc---cccccccCCC-CCCCC-CccceEEeccccc
Q 005981 523 LDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-F---NTLPVIYDRGL---IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 593 (666)
Q Consensus 523 lD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~-~---~~l~~~~erGl---ig~~~~~ce~-~~~yp-~tyDliha~~~f~ 593 (666)
|.+|+..|..+..|++.=.+.-...+..+|. + ...+++.+.++ +-+....... ++.++ +.||+|+-++ .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 5688888887777765300000012333332 1 33444444455 4444444221 33455 8999999883 1
Q ss_pred cCCCCCCHHHHHHHhhhcccCCeEEEEEe
Q 005981 594 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 622 (666)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRPgG~~ii~d 622 (666)
|. ......-+..+-+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1223456667778899999999876
No 479
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=81.89 E-value=1.8 Score=50.95 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=7.5
Q ss_pred cCcchhcccccc
Q 005981 231 GQNWISKEKDKF 242 (666)
Q Consensus 231 ~q~W~~~~g~~~ 242 (666)
.-.|++...+++
T Consensus 642 ~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 642 NCFWVKVNEDKL 653 (1102)
T ss_pred cceeeecchhhc
Confidence 456777666655
No 480
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=13 Score=38.90 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCeEEEECCCCchhHHHhccC--------CeEEEeCCcchHHHHHHHHHHHc-CCCceEEeec----ccCCCCCCCCeeE
Q 005981 275 IRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALER-GAPAMVAAFA----TRRLPYPSQAFDL 341 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiS~~~l~~a~~~~a~~r-g~~~~~~~~d----~e~Lpf~d~sFDl 341 (666)
..+.+|+|.|+..=++.|.+. +.+.+|++..-+.....+...+. +++..-...+ ...+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 578999999999766666542 78999999987776655555544 3332222222 22333 222223
Q ss_pred E-EecccccccccCh-HHHHHHHHHhccCCeEEEEEE
Q 005981 342 I-HCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 V-v~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st 376 (666)
+ +....+-.+.++. ..+|.++..+|+||-+|++..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2 2233334444333 378999999999999999975
No 481
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=81.72 E-value=0.88 Score=44.39 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCeeEEEecccccccc----cCh------HHHHHHHHHhccCCeEEEEEEC
Q 005981 336 SQAFDLIHCSRCRINWT----RDD------GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 336 d~sFDlVv~s~~l~h~~----~d~------~~~L~el~RvLkPGG~lv~st~ 377 (666)
.++||.+.|..++.|.. .|+ ...+.++.++||+||.|+++.+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999887776753 111 2789999999999999999965
No 482
>PRK11524 putative methyltransferase; Provisional
Probab=81.16 E-value=4.7 Score=42.71 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HhccccccccccCCC-CCCCC-CccceEEeccccccCCCCCCH-------------HHHHHHhhhcccCCeEEEEEeChh
Q 005981 561 YDRGLIGVMHDWCEP-FDTYP-RTYDLLHAAGLFSVESKRCNM-------------STIMLEMDRMLRPGGHVYIRDSID 625 (666)
Q Consensus 561 ~erGlig~~~~~ce~-~~~yp-~tyDliha~~~f~~~~~~c~~-------------~~~l~E~dRiLRPgG~~ii~d~~~ 625 (666)
++-+..-+++.-|.. +..+| .+||||.++==|....+..+. ..+|.|+.|+|||||.++|--...
T Consensus 4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Q ss_pred HHHHHHHHHHh---cCcEEEEEeccCC-------CCCceEEEEEEeC
Q 005981 626 VMDELQEIGKA---MGWHVTLRETAEG-------PHASYRILTADKR 662 (666)
Q Consensus 626 ~~~~~~~i~~~---l~W~~~~~~~~~~-------~~~~e~~l~~~k~ 662 (666)
.+..+..+++. +.-.+.-.....+ ....|-||++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~ 130 (284)
T PRK11524 84 NMPFIDLYCRKLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKD 130 (284)
T ss_pred hhhHHHHHHhcCcceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcC
No 483
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=81.11 E-value=4.9 Score=42.50 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred ceeeEeeccccchHHHHHHhhCCCceE--EEEeeccCC-CCChhHHHh--ccccccccc-cCCCCCC--CC-CccceEEe
Q 005981 518 KLRNVLDMRAGFGGFAAALIEQKFDCW--VMNVVPVSG-FNTLPVIYD--RGLIGVMHD-WCEPFDT--YP-RTYDLLHA 588 (666)
Q Consensus 518 ~iRnvlD~g~G~Ggfaa~L~~~~~~vw--vmnv~~~~~-~~~l~~~~e--rGlig~~~~-~ce~~~~--yp-~tyDliha 588 (666)
+-+.|||.|||.|...-|..+. | .-.++-+|. +.+++++.. ++.....+. |-+.+.. -+ ...|||-+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~----~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREV----WPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHH----hcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 4567999999999766555543 3 234555663 455544322 222222222 2111111 01 23499999
Q ss_pred ccccccCCCCCCHHHHHHHhhhcccCCeEEEEEeC-----hhHHHHHHHHHHhcCcEEEE
Q 005981 589 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTL 643 (666)
Q Consensus 589 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~d~-----~~~~~~~~~i~~~l~W~~~~ 643 (666)
+++++.+.. -....++..+=+-+.+ ++||=+. -+.+.++++.+....+.+..
T Consensus 109 s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 109 SYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred ehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 999987766 4455666666454555 7777543 34577777777666665544
No 484
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.84 E-value=20 Score=39.78 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCCc----hhHHHhccC-------CeEEEeC----CcchHHHHH---HHHHHHcCCCceEEee---cccC
Q 005981 273 HHIRVVMDAGCGVA----SFGAYLLPR-------NVITMSI----APKDVHENQ---IQFALERGAPAMVAAF---ATRR 331 (666)
Q Consensus 273 ~~~~~VLDIGCGtG----~~a~~L~~~-------~V~gvDi----S~~~l~~a~---~~~a~~rg~~~~~~~~---d~e~ 331 (666)
.+.-.|+|+|.|.| .+...|+.+ +||+++. +...+++.. .++|+..|++-.+... ..+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 34468999999999 566666665 8999998 444444433 3667777877655442 2233
Q ss_pred C-----CCCCCCeeEEEecccccccccC------hHHHHHHHHHhccCCeEEEEE
Q 005981 332 L-----PYPSQAFDLIHCSRCRINWTRD------DGILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 332 L-----pf~d~sFDlVv~s~~l~h~~~d------~~~~L~el~RvLkPGG~lv~s 375 (666)
+ ...++..=+|-|...++|...+ +...+-...|.|+|.-..+.-
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2 2233444344455555666422 334566777899999666554
No 485
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.32 E-value=2 Score=44.28 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCeEEEECCCCchhHHHhccC-------------CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC--------C
Q 005981 275 IRVVMDAGCGVASFGAYLLPR-------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------P 333 (666)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L--------p 333 (666)
..+++|+.+..|+|+..|.++ .|++||+-+.. --.|+ .....|+... -
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI~GV--~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PIEGV--IQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------ccCce--EEeecccCCHhHHHHHHHH
Confidence 468999999999998877542 38999986521 11111 1112222211 1
Q ss_pred CCCCCeeEEEeccc-----ccccccChH-----HHHHHHHHhccCCeEEEEEE
Q 005981 334 YPSQAFDLIHCSRC-----RINWTRDDG-----ILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 334 f~d~sFDlVv~s~~-----l~h~~~d~~-----~~L~el~RvLkPGG~lv~st 376 (666)
|....-|+|+|-.+ +|.+.+..+ .+|.-...+|||||.|+---
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 45567899998543 233321111 44556678999999997763
No 486
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=79.98 E-value=0.73 Score=42.09 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=28.1
Q ss_pred cceEEeccccc--c--CCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 583 YDLLHAAGLFS--V--ESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 583 yDliha~~~f~--~--~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
||+|-|-+|-. | .+| ..+..++.-|.+.|||||.+|+-
T Consensus 2 yDvilclSVtkWIHLn~GD-~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGD-EGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHHHHHHHHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcC-HHHHHHHHHHHHhhCCCCEEEEe
Confidence 89998875421 2 222 45678999999999999999994
No 487
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=78.65 E-value=19 Score=41.28 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCCCchhHHH----hcc----CCeEEEeCCcchHHHHHHHHHHHcCCC--ceE
Q 005981 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAY----LLP----RNVITMSIAPKDVHENQIQFALERGAP--AMV 324 (666)
Q Consensus 255 ~~~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~----L~~----~~V~gvDiS~~~l~~a~~~~a~~rg~~--~~~ 324 (666)
.+...+.|.+++.. ....+|+|-.||+|++... +.+ ..++|.++.+.....+..+... +|+. ...
T Consensus 171 P~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i 245 (489)
T COG0286 171 PREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANI 245 (489)
T ss_pred hHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCccccc
Confidence 34556666666652 2335899999999965433 221 2478999888776666554443 3433 122
Q ss_pred EeecccCCC-C----CCCCeeEEEecccc--cccccC---------------------h-HHHHHHHHHhccCCeEEEEE
Q 005981 325 AAFATRRLP-Y----PSQAFDLIHCSRCR--INWTRD---------------------D-GILLLEVNRMLRAGGYFAWA 375 (666)
Q Consensus 325 ~~~d~e~Lp-f----~d~sFDlVv~s~~l--~h~~~d---------------------~-~~~L~el~RvLkPGG~lv~s 375 (666)
...+...-| . ..+.||.|+++.-+ -.|... . ..+++.+.+.|+|||...+.
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 222222222 2 34679999976433 122111 1 36788899999998876665
Q ss_pred E
Q 005981 376 A 376 (666)
Q Consensus 376 t 376 (666)
.
T Consensus 326 l 326 (489)
T COG0286 326 L 326 (489)
T ss_pred e
Confidence 4
No 488
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=78.64 E-value=6.9 Score=40.71 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=66.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC-----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccCC
Q 005981 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (666)
Q Consensus 258 ~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~L 332 (666)
++..|+--+.++ +-.++.+||=+|+++|+...+..+- -|++|++|...-. .....|++|-...-+.. | .+.
T Consensus 141 LAA~I~gGvdni-hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGR-dL~nmAkkRtNiiPIiE-D-Arh 216 (317)
T KOG1596|consen 141 LAAGILGGVDNI-HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGR-DLINMAKKRTNIIPIIE-D-ARH 216 (317)
T ss_pred HHHHhhcCccce-eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchH-HHHHHhhccCCceeeec-c-CCC
Confidence 344444434332 2246689999999999877777654 7899999875332 23456665532111221 2 223
Q ss_pred CC----CCCCeeEEEecccccccccCh-HHHHHHHHHhccCCeEEEEEEC
Q 005981 333 PY----PSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 333 pf----~d~sFDlVv~s~~l~h~~~d~-~~~L~el~RvLkPGG~lv~st~ 377 (666)
|. .-.-.|+|++ .+ -+ +|. ..+..++...||+||.|+++-.
T Consensus 217 P~KYRmlVgmVDvIFa-Dv-aq--pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFA-DV-AQ--PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred chheeeeeeeEEEEec-cC-CC--chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 31 1245787774 22 11 222 3667788999999999999853
No 489
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.94 E-value=3.9 Score=42.17 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=61.0
Q ss_pred eeEeeccc--cchHHHHHH--hhCCCceEEEEeeccCCCCChhHHHhccc---ccccccc-CCCCCC----CC-CccceE
Q 005981 520 RNVLDMRA--GFGGFAAAL--IEQKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDW-CEPFDT----YP-RTYDLL 586 (666)
Q Consensus 520 RnvlD~g~--G~Ggfaa~L--~~~~~~vwvmnv~~~~~~~~l~~~~erGl---ig~~~~~-ce~~~~----yp-~tyDli 586 (666)
+++||+|. ||+.+|-|| -+.| .|.++-+-+-..+-.++++.-.|+ |...|.- ||++.. +. .|||++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCc-eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 45899995 555554444 3556 355555544333455777777787 5555443 444332 33 899998
Q ss_pred EeccccccCCCCCCHHHHHHHhhhcccCCeEEEEE
Q 005981 587 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 621 (666)
Q Consensus 587 ha~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ii~ 621 (666)
-.+ +.++.+ .....+.=|+||+||.+++.
T Consensus 154 FvD----adK~nY--~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 FVD----ADKDNY--SNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEc----cchHHH--HHHHHHHHhhcccccEEEEe
Confidence 876 344433 47888888999999999985
No 490
>KOG2730 consensus Methylase [General function prediction only]
Probab=77.25 E-value=2.4 Score=43.49 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=47.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCCCchhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCc--eEEeecc---
Q 005981 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT--- 329 (666)
Q Consensus 257 ~~i~~L~~~L~~i~~g~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~--~~~~~d~--- 329 (666)
.....++..+.... ....|+|.-||.|..+...+.+ .|+++|++|.-+.-|+ ..++-.|++. .+.++|.
T Consensus 80 ~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 80 KIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred HHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHH
Confidence 34444444443321 2357999999999777776655 8999999997654333 2334446654 2333332
Q ss_pred -cCCCCCCCCeeEEEe
Q 005981 330 -RRLPYPSQAFDLIHC 344 (666)
Q Consensus 330 -e~Lpf~d~sFDlVv~ 344 (666)
..|.+....+|+|..
T Consensus 156 ~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 156 ASKLKADKIKYDCVFL 171 (263)
T ss_pred HHHHhhhhheeeeeec
Confidence 223343334556653
No 491
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.72 E-value=8.7 Score=41.29 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEee--cccCCCCCCCCeeEEEecc
Q 005981 274 HIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATRRLPYPSQAFDLIHCSR 346 (666)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~--d~e~Lpf~d~sFDlVv~s~ 346 (666)
.+.+||-+|||. |.++..+++. +|+++|.++. +.+.+++.|....+... +..++....+.+|+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 357899898762 3444444433 5788887764 33566666644322111 1111111123589998432
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 347 ~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
. ....+....+.|++||.+++...
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 13467888899999999998753
No 492
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.62 E-value=9.8 Score=43.88 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCCch-hHHHhccC---CeEEEeCCcchHHHHHHHHHHHcCCCceEEeeccc---------CCC------
Q 005981 273 HHIRVVMDAGCGVAS-FGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR---------RLP------ 333 (666)
Q Consensus 273 ~~~~~VLDIGCGtG~-~a~~L~~~---~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e---------~Lp------ 333 (666)
..+.+||=+|||.-. .+...+.. .|+++|.++.-+ +.+++.|..........+ .+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl-----e~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVA-----EQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 356899999999753 33333332 899999887533 445555543211111000 000
Q ss_pred ----CCC--CCeeEEEecccccccccChHHHHHHHHHhccCCeEEEEEEC
Q 005981 334 ----YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (666)
Q Consensus 334 ----f~d--~sFDlVv~s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~ 377 (666)
+.+ +.+|+|+.... ..-...+..+.+++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999995432 22212333446999999999999988764
No 493
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=76.55 E-value=3.1 Score=39.19 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=30.1
Q ss_pred CCceeeEeeccccchHHHHHHhh-----CCCceEEEEeeccCC-CCChhHHHhc
Q 005981 516 KMKLRNVLDMRAGFGGFAAALIE-----QKFDCWVMNVVPVSG-FNTLPVIYDR 563 (666)
Q Consensus 516 ~~~iRnvlD~g~G~Ggfaa~L~~-----~~~~vwvmnv~~~~~-~~~l~~~~er 563 (666)
......|.|+|||-|-++.+|+. . ...+|+.+|. +..++.+.+|
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~----~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS----PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC----CCCeEEEEECCcHHHHHHHHH
Confidence 35677899999999999999988 4 2236666664 3344444443
No 494
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=76.45 E-value=11 Score=42.46 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=71.8
Q ss_pred eEeeccccchHHHHHHhhCCCceEEEEeeccCCCCChhHHHhcccc--ccccccCCCCCCCC---CccceEEeccccccC
Q 005981 521 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLI--GVMHDWCEPFDTYP---RTYDLLHAAGLFSVE 595 (666)
Q Consensus 521 nvlD~g~G~Ggfaa~L~~~~~~vwvmnv~~~~~~~~l~~~~erGli--g~~~~~ce~~~~yp---~tyDliha~~~f~~~ 595 (666)
.|+|+=||+|+|+-+|+++...|..+-+++-.-...-.-|...|+- -+.-.-.|.|..=. ..+|.|-.+
T Consensus 296 ~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD------ 369 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD------ 369 (432)
T ss_pred EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC------
Confidence 4999999999999999988665666666664433444444445662 22223333333311 467888776
Q ss_pred CCCCCHH-HHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcE
Q 005981 596 SKRCNMS-TIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH 640 (666)
Q Consensus 596 ~~~c~~~-~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~ 640 (666)
..|+.+. +++.++.+ +.|...++|+=+...+.+=-.++..-+++
T Consensus 370 PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 370 PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCeE
Confidence 5666666 77777777 56778999996666554444445555553
No 495
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=76.35 E-value=18 Score=37.67 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCc-hhHHHhccC--CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecc-cCCCCC-CCCeeEEEecccc
Q 005981 274 HIRVVMDAGCGVA-SFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRCR 348 (666)
Q Consensus 274 ~~~~VLDIGCGtG-~~a~~L~~~--~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~-e~Lpf~-d~sFDlVv~s~~l 348 (666)
.+++||=+|=.-- +++..|... +|+.+|+....+.--. +.|.+.|++......|. ..||-. .++||++++--.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4589999996655 455555443 8999999998775543 57777888754444452 334421 489999996432
Q ss_pred cccccChHHHHHHHHHhccCCe
Q 005981 349 INWTRDDGILLLEVNRMLRAGG 370 (666)
Q Consensus 349 ~h~~~d~~~~L~el~RvLkPGG 370 (666)
.-. +....++.+....||..|
T Consensus 122 yT~-~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 122 YTP-EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SSH-HHHHHHHHHHHHTB-STT
T ss_pred CCH-HHHHHHHHHHHHHhCCCC
Confidence 111 223477888889999777
No 496
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=76.32 E-value=2.5 Score=49.86 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=5.1
Q ss_pred eCCcchHHHHHHH
Q 005981 301 SIAPKDVHENQIQ 313 (666)
Q Consensus 301 DiS~~~l~~a~~~ 313 (666)
+.+...+.+++++
T Consensus 724 evne~vLse~~iq 736 (1102)
T KOG1924|consen 724 EVNEDVLSESMIQ 736 (1102)
T ss_pred hccHHHHHHHHHH
Confidence 3333344444433
No 497
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.69 E-value=9.3 Score=41.93 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=57.3
Q ss_pred CCCeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-----C-CC-CCCCeeE
Q 005981 274 HIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----L-PY-PSQAFDL 341 (666)
Q Consensus 274 ~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-----L-pf-~d~sFDl 341 (666)
...+||.+|||. |..+..+++. .|++++.++..+ +.+++.+... +......+ + .+ ....+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-----~~~~~~~~~~-vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-----EMARSHLGAE-TINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHcCCcE-EEcCCcchHHHHHHHHHcCCCCCCE
Confidence 447899999987 7776666654 488888876543 4444442111 11111110 1 11 2346999
Q ss_pred EEecccc-------c-------ccccChHHHHHHHHHhccCCeEEEEEE
Q 005981 342 IHCSRCR-------I-------NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (666)
Q Consensus 342 Vv~s~~l-------~-------h~~~d~~~~L~el~RvLkPGG~lv~st 376 (666)
|+-.... + +-..+....+.++.+.|+++|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 9853210 0 011234568899999999999998875
No 498
>PRK13699 putative methylase; Provisional
Probab=75.26 E-value=4.6 Score=41.52 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccCCeEEEEEeChhHHHHHHHHHHhcCcEEE
Q 005981 601 MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 642 (666)
Q Consensus 601 ~~~~l~E~dRiLRPgG~~ii~d~~~~~~~~~~i~~~l~W~~~ 642 (666)
+..++.|+.|||||||.+++--....+..+..+++...|.+.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEe
No 499
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=75.12 E-value=2.2 Score=41.74 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=46.7
Q ss_pred CCCCCccceEEeccccccC-----CCC---CCHHHHHHHhhhcccCCeEEEEE-----eChhH-------HHHHHHHHHh
Q 005981 577 DTYPRTYDLLHAAGLFSVE-----SKR---CNMSTIMLEMDRMLRPGGHVYIR-----DSIDV-------MDELQEIGKA 636 (666)
Q Consensus 577 ~~yp~tyDliha~~~f~~~-----~~~---c~~~~~l~E~dRiLRPgG~~ii~-----d~~~~-------~~~~~~i~~~ 636 (666)
-.|.++||.+-|-+.+.|. ++. ..=...|+++.|+|||||.+++. |.... ..++-.++..
T Consensus 58 ~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~g 137 (177)
T PF03269_consen 58 QKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYG 137 (177)
T ss_pred HHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCC
Confidence 4688999998888887663 222 11137789999999999999997 33322 3456667777
Q ss_pred cCcEEEE
Q 005981 637 MGWHVTL 643 (666)
Q Consensus 637 l~W~~~~ 643 (666)
+.|--..
T Consensus 138 fe~i~tf 144 (177)
T PF03269_consen 138 FEWIDTF 144 (177)
T ss_pred cEEEeee
Confidence 7775543
No 500
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.07 E-value=3.8 Score=44.78 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=57.2
Q ss_pred CeEEEECCCC-chhHHHhccC----CeEEEeCCcchHHHHHHHHHHHcCCCceEEeecccC-----CCCCC-CCeeEEEe
Q 005981 276 RVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----LPYPS-QAFDLIHC 344 (666)
Q Consensus 276 ~~VLDIGCGt-G~~a~~L~~~----~V~gvDiS~~~l~~a~~~~a~~rg~~~~~~~~d~e~-----Lpf~d-~sFDlVv~ 344 (666)
.+|+=+|||. |.++..+++. .|+++|.++.- .+.|++.+....+.....+. +.... ..+|+|+=
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 3899999997 6665555443 89999988763 35565533222121111100 01122 36999984
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEECC
Q 005981 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (666)
Q Consensus 345 s~~l~h~~~d~~~~L~el~RvLkPGG~lv~st~P 378 (666)
... ....+.++.+++|+||.+++...+
T Consensus 245 ~~G-------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 245 AVG-------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCC-------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 322 345899999999999999998753
Done!