Query         005985
Match_columns 666
No_of_seqs    650 out of 3318
Neff          7.2 
Searched_HMMs 13730
Date          Mon Mar 25 12:53:20 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005985hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2j4za1 d.144.1.7 (A:126-388)  100.0 2.9E-55 2.1E-59  451.4  24.0  247   82-401     2-260 (263)
  2 d1nvra_ d.144.1.7 (A:) Cell cy 100.0 1.4E-55   1E-59  455.8  20.9  249   85-402     4-266 (271)
  3 d1yhwa1 d.144.1.7 (A:249-541)  100.0 4.9E-54 3.5E-58  449.0  25.6  246   86-402    20-276 (293)
  4 d1uu3a_ d.144.1.7 (A:) 3-phosp 100.0   8E-54 5.8E-58  446.4  24.2  249   85-406     7-277 (288)
  5 d1s9ja_ d.144.1.7 (A:) Dual sp 100.0 2.3E-54 1.7E-58  457.3  19.0  266   83-404     3-306 (322)
  6 d1a06a_ d.144.1.7 (A:) Calmodu 100.0 3.1E-53 2.3E-57  445.8  26.4  250   86-403     9-271 (307)
  7 d2jfla1 d.144.1.7 (A:21-308) S 100.0 1.5E-53 1.1E-57  444.3  23.1  249   86-402    12-275 (288)
  8 d1koaa2 d.144.1.7 (A:5915-6264 100.0   6E-53 4.4E-57  451.4  27.7  255   84-405    24-289 (350)
  9 d1o6la_ d.144.1.7 (A:) Pkb kin 100.0 5.3E-53 3.9E-57  449.5  27.1  249   83-404     2-269 (337)
 10 d2java1 d.144.1.7 (A:3-271) Se 100.0 2.9E-53 2.1E-57  437.9  22.9  249   85-399     3-269 (269)
 11 d1omwa3 d.144.1.7 (A:186-549)  100.0 1.2E-52 8.4E-57  451.6  28.5  255   84-404     2-273 (364)
 12 d1jksa_ d.144.1.7 (A:) Death-a 100.0 6.9E-53   5E-57  439.9  25.5  252   86-405    10-280 (293)
 13 d1t4ha_ d.144.1.7 (A:) Protein 100.0 1.3E-52 9.2E-57  433.3  27.2  247   88-400    11-270 (270)
 14 d1koba_ d.144.1.7 (A:) Twitchi 100.0 9.9E-53 7.2E-57  450.1  26.6  252   85-403    28-290 (352)
 15 d1fota_ d.144.1.7 (A:) cAMP-de 100.0 1.7E-52 1.3E-56  441.8  25.7  249   83-404     1-265 (316)
 16 d1ua2a_ d.144.1.7 (A:) Cell di 100.0 1.9E-52 1.4E-56  437.3  25.0  267   89-405     1-289 (299)
 17 d1phka_ d.144.1.7 (A:) gamma-s 100.0 4.7E-52 3.4E-56  430.6  27.5  251   85-402     2-276 (277)
 18 d1u5ra_ d.144.1.7 (A:) Serine/ 100.0 1.6E-52 1.2E-56  440.8  22.1  247   87-403    16-274 (309)
 19 d1rdqe_ d.144.1.7 (E:) cAMP-de 100.0 4.8E-52 3.5E-56  444.5  25.7  248   84-404    39-302 (350)
 20 d1gz8a_ d.144.1.7 (A:) Cyclin- 100.0 1.5E-51 1.1E-55  430.6  28.4  272   85-405     1-292 (298)
 21 d1tkia_ d.144.1.7 (A:) Titin,  100.0 5.4E-52 3.9E-56  439.0  22.3  251   85-402     4-264 (321)
 22 d1xjda_ d.144.1.7 (A:) Protein 100.0 3.4E-51 2.5E-55  432.6  25.4  247   85-404     1-263 (320)
 23 d2ozaa1 d.144.1.7 (A:51-385) M 100.0 1.9E-51 1.4E-55  437.4  21.5  258   84-403     9-279 (335)
 24 d1xwsa_ d.144.1.7 (A:) Proto-o 100.0 2.2E-51 1.6E-55  424.4  20.3  243   86-403     4-262 (273)
 25 d1ob3a_ d.144.1.7 (A:) Cyclin- 100.0 9.9E-51 7.2E-55  421.4  24.6  266   85-401     1-286 (286)
 26 d3bqca1 d.144.1.7 (A:3-330) Pr 100.0 1.8E-50 1.3E-54  427.5  25.7  268   85-404    34-327 (328)
 27 d1blxa_ d.144.1.7 (A:) Cyclin- 100.0 2.7E-50   2E-54  421.4  25.3  278   85-403     6-300 (305)
 28 d1q5ka_ d.144.1.7 (A:) Glycoge 100.0 1.9E-50 1.4E-54  431.8  22.4  275   87-404    21-311 (350)
 29 d1unla_ d.144.1.7 (A:) Cyclin- 100.0 1.1E-49 8.3E-54  413.3  27.7  258   85-403     1-290 (292)
 30 d1cm8a_ d.144.1.7 (A:) MAP kin 100.0 1.2E-49 8.5E-54  424.5  26.3  273   85-404    17-309 (346)
 31 d3blha1 d.144.1.7 (A:8-325) Ce 100.0   3E-49 2.2E-53  416.1  26.1  262   85-403     9-312 (318)
 32 d1opja_ d.144.1.7 (A:) Abelson 100.0 2.8E-49 2.1E-53  411.6  24.9  246   81-395    12-268 (287)
 33 d1pmea_ d.144.1.7 (A:) MAP kin 100.0 6.3E-49 4.6E-53  419.1  27.2  271   86-403     8-302 (345)
 34 d2gfsa1 d.144.1.7 (A:5-352) MA 100.0 8.1E-49 5.9E-53  417.7  24.4  274   85-404    17-309 (348)
 35 d1vzoa_ d.144.1.7 (A:) Ribosom 100.0 9.8E-49 7.1E-53  414.1  22.7  257   83-403    21-299 (322)
 36 d1rjba_ d.144.1.7 (A:) Fl cyto 100.0 1.7E-48 1.2E-52  412.7  23.4  271   82-396    33-320 (325)
 37 d1sm2a_ d.144.1.7 (A:) Tyrosin 100.0 4.3E-48 3.1E-52  397.4  25.2  240   85-396     4-255 (263)
 38 d1uwha_ d.144.1.7 (A:) B-Raf k 100.0 1.6E-48 1.2E-52  403.7  21.1  246   82-396     4-266 (276)
 39 d1jpaa_ d.144.1.7 (A:) ephb2 r 100.0 5.3E-48 3.9E-52  404.3  23.3  246   83-396    23-286 (299)
 40 d1qpca_ d.144.1.7 (A:) Lymphoc 100.0 1.6E-48 1.2E-52  402.6  18.4  249   81-401     8-270 (272)
 41 d1o6ya_ d.144.1.7 (A:) Mycobac 100.0 4.7E-48 3.5E-52  399.6  20.5  250   85-399     6-272 (277)
 42 d1u59a_ d.144.1.7 (A:) Tyrosin 100.0 9.8E-48 7.1E-52  399.6  21.5  247   84-400     6-272 (285)
 43 d1xbba_ d.144.1.7 (A:) Tyrosin 100.0 6.1E-48 4.5E-52  399.4  19.5  238   92-400    13-270 (277)
 44 d2b1pa1 d.144.1.7 (A:46-400) c 100.0 2.7E-47   2E-51  407.9  23.4  270   85-403    16-318 (355)
 45 d1ywna1 d.144.1.7 (A:818-1166) 100.0   5E-47 3.6E-51  396.0  24.8  266   83-396    10-290 (299)
 46 d1k2pa_ d.144.1.7 (A:) Bruton' 100.0 2.4E-47 1.7E-51  391.1  20.8  240   85-396     3-254 (258)
 47 d1fmka3 d.144.1.7 (A:249-533)  100.0 4.7E-47 3.4E-51  394.4  23.2  253   80-403    11-276 (285)
 48 d1mp8a_ d.144.1.7 (A:) Focal a 100.0 6.8E-47   5E-51  390.2  22.8  245   83-396     4-262 (273)
 49 d1byga_ d.144.1.7 (A:) Carboxy 100.0 8.2E-47   6E-51  387.9  19.1  244   82-396     3-253 (262)
 50 d1mqba_ d.144.1.7 (A:) epha2 r 100.0 7.1E-46 5.2E-50  384.8  26.0  247   83-395     4-265 (283)
 51 d1xkka_ d.144.1.7 (A:) EGF rec 100.0 6.1E-46 4.4E-50  391.5  25.5  244   85-396     8-266 (317)
 52 d1lufa_ d.144.1.7 (A:) Musk ty 100.0 4.9E-46 3.5E-50  389.3  22.8  271   82-395     9-294 (301)
 53 d1fgka_ d.144.1.7 (A:) Fibrobl 100.0 2.1E-45 1.5E-49  384.3  25.1  265   81-395     8-289 (299)
 54 d1t46a_ d.144.1.7 (A:) c-KIT r 100.0 3.3E-45 2.4E-49  384.8  26.8  268   81-395    18-300 (311)
 55 d1fvra_ d.144.1.7 (A:) Tie2 ki 100.0 1.9E-45 1.4E-49  386.4  19.5  261   81-396     5-279 (309)
 56 d1u46a_ d.144.1.7 (A:) Activat 100.0 3.9E-45 2.9E-49  377.5  21.1  243   85-395     7-267 (273)
 57 d1p4oa_ d.144.1.7 (A:) Insulin 100.0 1.3E-44 9.8E-49  379.7  19.6  264   81-401    15-299 (308)
 58 d1ckia_ d.144.1.7 (A:) Casein  100.0 3.8E-43 2.8E-47  366.3  25.1  252   86-400     7-279 (299)
 59 d1vjya_ d.144.1.7 (A:) Type I  100.0 1.1E-43 8.3E-48  371.9  19.7  257   86-395     3-290 (303)
 60 d1r0pa_ d.144.1.7 (A:) Hepatoc 100.0 3.4E-43 2.5E-47  369.6  22.5  242   89-396    30-287 (311)
 61 d1q8ya_ d.144.1.7 (A:) Sky1p { 100.0 2.1E-43 1.5E-47  377.0  21.0  280   85-403    12-335 (362)
 62 d1csna_ d.144.1.7 (A:) Casein  100.0 5.8E-42 4.2E-46  356.9  25.4  247   85-394     4-270 (293)
 63 d1zara2 d.144.1.9 (A:91-281) R  99.9 2.6E-24 1.9E-28  208.5   9.1  162   88-312     2-188 (191)
 64 d1j7la_ d.144.1.6 (A:) Type II  98.3   2E-06 1.4E-10   84.4  12.1   87   85-192    13-101 (263)
 65 d2pula1 d.144.1.6 (A:5-396) Me  97.8 4.8E-05 3.5E-09   79.6  11.8   78   91-187    31-117 (392)
 66 d1nd4a_ d.144.1.6 (A:) Aminogl  97.7   6E-05 4.4E-09   73.0  11.2   82   87-188    12-93  (255)
 67 d1nw1a_ d.144.1.8 (A:) Choline  97.0  0.0012 8.4E-08   68.6  10.7   85   84-187    41-127 (395)
 68 d1zyla1 d.144.1.6 (A:4-328) Rd  96.4   0.003 2.2E-07   63.5   8.1   71  105-185    37-108 (325)
 69 d2ppqa1 d.144.1.6 (A:5-320) Ho  96.2   0.007 5.1E-07   60.0  10.1   54   85-149    17-70  (316)
 70 d1ci0a_ b.45.1.1 (A:) Pyridoxi  26.0      20  0.0015   32.2   3.4   50  613-662    12-66  (205)

No 1  
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.9e-55  Score=451.42  Aligned_cols=247  Identities=20%  Similarity=0.265  Sum_probs=210.2

Q ss_pred             ccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCC
Q 005985           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHS  156 (666)
Q Consensus        82 ~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hp  156 (666)
                      +|.+++|++++.||+|+||    +||+|+++.     +++.||+|++.+..     ..+.+.+|+++|+.++      ||
T Consensus         2 ~~~l~dy~i~~~iG~G~fg----~Vy~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~------hp   66 (263)
T d2j4za1           2 QWALEDFEIGRPLGKGKFG----NVYLAREKQ-----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR------HP   66 (263)
T ss_dssp             CCCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCC------CT
T ss_pred             CcchhHeEEEEEEecCCCc----EEEEEEECC-----CCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcC------CC
Confidence            4678999999999999999    999999998     89999999997432     2355689999999998      99


Q ss_pred             cceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHH
Q 005985          157 YSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  236 (666)
Q Consensus       157 nIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~  236 (666)
                      |||++++++.     +++.+|||||||++|+|.+++.+.+         .++|                    ..++.|+
T Consensus        67 nIv~~~~~~~-----~~~~~~ivmEy~~~g~L~~~l~~~~---------~l~e--------------------~~~~~i~  112 (263)
T d2j4za1          67 NILRLYGYFH-----DATRVYLILEYAPLGTVYRELQKLS---------KFDE--------------------QRTATYI  112 (263)
T ss_dssp             TBCCEEEEEE-----CSSEEEEEEECCTTCBHHHHHHHHS---------SCCH--------------------HHHHHHH
T ss_pred             CCCeEEEEEE-----ECCEEEEEEeecCCCcHHHHHhhcC---------CCCH--------------------HHHHHHH
Confidence            9999999999     7889999999999999999998754         4555                    5588999


Q ss_pred             HHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC-------CCccCcccccCcCCCCchhHHHHH
Q 005985          237 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG-------PNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       237 ~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~-------~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      .||+.||+|||++||+||||||+|||++. ++.+||+|||+|+......       +.|+|||++.+ ..|+.++|||||
T Consensus       113 ~qi~~al~~lH~~~ivHrDiKp~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~-~~~~~~~DiwSl  190 (263)
T d2j4za1         113 TELANALSYCHSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG-RMHDEKVDLWSL  190 (263)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTT-CCCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHCCeeeeeeccccceecC-CCCEeecccceeeecCCCcccccCCCCcccCHHHHcC-CCCCchhhhhhH
Confidence            99999999999999999999999999998 8999999999998765443       78999997665 458999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC
Q 005985          310 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  389 (666)
Q Consensus       310 GviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT  389 (666)
                      ||++|+|++|++||..            .....   .+..+....       +...+.+|+++++||.+||++||++|||
T Consensus       191 Gvilyell~G~~Pf~~------------~~~~~---~~~~i~~~~-------~~~p~~~s~~~~~li~~~L~~dp~~R~t  248 (263)
T d2j4za1         191 GVLCYEFLVGKPPFEA------------NTYQE---TYKRISRVE-------FTFPDFVTEGARDLISRLLKHNPSQRPM  248 (263)
T ss_dssp             HHHHHHHHHSSCTTCC------------SSHHH---HHHHHHTTC-------CCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hHHHHHHhcCCCCCCC------------CCHHH---HHHHHHcCC-------CCCCccCCHHHHHHHHHHccCCHhHCcC
Confidence            9999999999999952            22222   222222221       1223457899999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q 005985          390 CLDALRHPFLCG  401 (666)
Q Consensus       390 a~elL~HPwf~~  401 (666)
                      ++|+|+||||++
T Consensus       249 ~~eil~hp~~~~  260 (263)
T d2j4za1         249 LREVLEHPWITA  260 (263)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHHcCcCcCC
Confidence            999999999964


No 2  
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-55  Score=455.85  Aligned_cols=249  Identities=19%  Similarity=0.219  Sum_probs=206.0

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh---hHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      +++|++++.||+|+||    +||+|+++.     +++.||||++....   ..+.+.+|+++|++++      |||||++
T Consensus         4 ~~dy~~~~~lG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~------HpnIv~~   68 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYG----EVQLAVNRV-----TEEAVAVKIVDMKRAVDCPENIKKEICINKMLN------HENVVKF   68 (271)
T ss_dssp             TTEEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECC-------CHHHHHHHHHTCC------CTTBCCE
T ss_pred             CcceEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcchHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            5789999999999999    999999998     89999999997532   2345689999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.     +.+.+|||||||++|+|.+++...+         .++|                    ..++.+++||+.
T Consensus        69 ~~~~~-----~~~~~~ivmEy~~gg~L~~~l~~~~---------~l~e--------------------~~~~~i~~qi~~  114 (271)
T d1nvra_          69 YGHRR-----EGNIQYLFLEYCSGGELFDRIEPDI---------GMPE--------------------PDAQRFFHQLMA  114 (271)
T ss_dssp             EEEEE-----ETTEEEEEEECCTTEEGGGGSBTTT---------BCCH--------------------HHHHHHHHHHHH
T ss_pred             eeeec-----cCceeEEEEeccCCCcHHHHHhcCC---------CCCH--------------------HHHHHHHHHHHH
Confidence            99999     7789999999999999999987643         4555                    568889999999


Q ss_pred             HHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC-----------CCCCccCcccccCcCCCCchhHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRCVG  310 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~-----------~~~~Y~APEvl~~~~~ys~ksDIWSLG  310 (666)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+....           +++.|+|||++.+...++.++||||||
T Consensus       115 al~ylH~~~IiHrDiKp~NILl~~-~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlG  193 (271)
T d1nvra_         115 GVVYLHGIGITHRDIKPENLLLDE-RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCG  193 (271)
T ss_dssp             HHHHHHHTTEECSCCCGGGEEECT-TCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCcccHHHEEECC-CCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhH
Confidence            999999999999999999999998 89999999999986532           237899999887776668899999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCH
Q 005985          311 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  390 (666)
Q Consensus       311 viLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa  390 (666)
                      |++|||++|++||......          ......    ....     ......++.+|+++++||.+||+.||++|||+
T Consensus       194 vilyeml~G~~pf~~~~~~----------~~~~~~----~~~~-----~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (271)
T d1nvra_         194 IVLTAMLAGELPWDQPSDS----------CQEYSD----WKEK-----KTYLNPWKKIDSAPLALLHKILVENPSARITI  254 (271)
T ss_dssp             HHHHHHHHSSCSCSSSSTT----------SHHHHH----HHTT-----CTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             HHHHHHHhCCCCCCCCChH----------HHHHHH----HhcC-----CCCCCccccCCHHHHHHHHHHcCCChhHCcCH
Confidence            9999999999999522110          011111    1111     11123345789999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005985          391 LDALRHPFLCGP  402 (666)
Q Consensus       391 ~elL~HPwf~~~  402 (666)
                      +|+|+||||+..
T Consensus       255 ~eil~hpwf~~~  266 (271)
T d1nvra_         255 PDIKKDRWYNKP  266 (271)
T ss_dssp             HHHTTCTTTTCC
T ss_pred             HHHhcCHhhCcC
Confidence            999999999863


No 3  
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.9e-54  Score=449.05  Aligned_cols=246  Identities=20%  Similarity=0.230  Sum_probs=206.6

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh--hHHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      ++|+++++||+|+||    +||+|+++.     +++.||||++....  ..+.+.+|+.+|++++      |||||++++
T Consensus        20 ~~Y~~~~~iG~G~fg----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~~   84 (293)
T d1yhwa1          20 KKYTRFEKIGQGASG----TVYTAMDVA-----TGQEVAIRQMNLQQQPKKELIINEILVMRENK------NPNIVNYLD   84 (293)
T ss_dssp             TTBCSCEECCCSSSC----EEEEEEBTT-----TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCC------CTTBCCEEE
T ss_pred             cccEEEEEEecCcCc----EEEEEEECC-----CCCEEEEEEEecccChHHHHHHHHHHHHHhCC------CCCEeeEeE
Confidence            579999999999999    999999998     89999999997532  3456799999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      +|.     +.+.+|||||||++|+|.+++.+.          .++|                    ..++.|++||+.||
T Consensus        85 ~~~-----~~~~~~ivmEy~~gg~L~~~~~~~----------~l~~--------------------~~~~~i~~qi~~aL  129 (293)
T d1yhwa1          85 SYL-----VGDELWVVMEYLAGGSLTDVVTET----------CMDE--------------------GQIAAVCRECLQAL  129 (293)
T ss_dssp             EEE-----ETTEEEEEEECCTTCBHHHHHHHS----------CCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEEecCCCcHHHHhhcc----------CCCH--------------------HHHHHHHHHHHHHH
Confidence            999     678999999999999999988764          4555                    56889999999999


Q ss_pred             HHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHHHHHHHH
Q 005985          244 NYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  314 (666)
Q Consensus       244 ~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWSLGviLy  314 (666)
                      +|||++||+||||||+|||++. ++++||+|||+|+.+...         ++.|+|||++.+ ..|+.++|||||||++|
T Consensus       130 ~yLH~~~iiHrDiKp~NILl~~-~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~~~~~DiwSlGvily  207 (293)
T d1yhwa1         130 EFLHSNQVIHRDIKSDNILLGM-DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR-KAYGPKVDIWSLGIMAI  207 (293)
T ss_dssp             HHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSS-SCBCTHHHHHHHHHHHH
T ss_pred             HHHHHCCCcccCCcHHHeEECC-CCcEeeccchhheeeccccccccccccCCCccChhhhcC-CCCCchhceehHhHHHH
Confidence            9999999999999999999998 899999999999876432         267999997655 56899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005985          315 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  394 (666)
Q Consensus       315 eLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL  394 (666)
                      +|++|++||.+.            ....   .+........+    .++..+.+++++++||.+||++||++|||++|+|
T Consensus       208 emltG~~Pf~~~------------~~~~---~~~~~~~~~~~----~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil  268 (293)
T d1yhwa1         208 EMIEGEPPYLNE------------NPLR---ALYLIATNGTP----ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELL  268 (293)
T ss_dssp             HHHHSSCTTTTS------------CHHH---HHHHHHHHCSC----CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred             HHhhCCCCCCCC------------CHHH---HHHHHHhCCCC----CCCCcccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            999999999632            1111   11112111111    1233456899999999999999999999999999


Q ss_pred             cCCCCCCC
Q 005985          395 RHPFLCGP  402 (666)
Q Consensus       395 ~HPwf~~~  402 (666)
                      +||||+..
T Consensus       269 ~Hp~~~~~  276 (293)
T d1yhwa1         269 QHQFLKIA  276 (293)
T ss_dssp             TCGGGGGC
T ss_pred             cCHhhCCC
Confidence            99999753


No 4  
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8e-54  Score=446.35  Aligned_cols=249  Identities=18%  Similarity=0.275  Sum_probs=210.2

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++.+..     ..+.+.+|+++|++++      |||||
T Consensus         7 p~dy~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~------HpnIv   71 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFS----TVVLARELA-----TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD------HPFFV   71 (288)
T ss_dssp             GGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCC------STTBC
T ss_pred             CCCCEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcC------CCCee
Confidence            3689999999999999    999999998     89999999997432     2355789999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     +++.+|||||||++|+|.+++...+         .++|                    ..++.++.||
T Consensus        72 ~l~~~~~-----~~~~~~ivmEy~~gg~L~~~~~~~~---------~l~e--------------------~~~~~~~~qi  117 (288)
T d1uu3a_          72 KLYFTFQ-----DDEKLYFGLSYAKNGELLKYIRKIG---------SFDE--------------------TCTRFYTAEI  117 (288)
T ss_dssp             CEEEEEE-----CSSEEEEEECCCTTEEHHHHHHHHS---------SCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEE-----ECCEEEEEEEccCCCCHHHhhhccC---------CCCH--------------------HHHHHHHHHH
Confidence            9999999     7899999999999999999998764         4565                    5588999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC-----------CCCCccCcccccCcCCCCchhHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE-----------DGPNNSSPDSNMDRRQMMIAFDMRC  308 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~-----------~~~~Y~APEvl~~~~~ys~ksDIWS  308 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.+..           +++.|+|||++.+ ..|+.++||||
T Consensus       118 ~~al~ylH~~~iiHrDiKp~NIll~~-~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~-~~~~~~~DiwS  195 (288)
T d1uu3a_         118 VSALEYLHGKGIIHRDLKPENILLNE-DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTE-KSACKSSDLWA  195 (288)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECC----------CCCCGGGCCHHHHHT-CCCCHHHHHHH
T ss_pred             HHHHHhhccccEEcCcCCccccccCC-CceEEecccccceecccCCcccccccccCCccccCceeecc-CCCCcccceeh
Confidence            99999999999999999999999998 89999999999986542           2378999997655 45899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC
Q 005985          309 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  388 (666)
Q Consensus       309 LGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp  388 (666)
                      |||++|+|++|++||..            .+..   +.+..+.....       .....+++++++||.+||++||++||
T Consensus       196 lGvilyell~g~~Pf~~------------~~~~---~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~~R~  253 (288)
T d1uu3a_         196 LGCIIYQLVAGLPPFRA------------GNEY---LIFQKIIKLEY-------DFPEKFFPKARDLVEKLLVLDATKRL  253 (288)
T ss_dssp             HHHHHHHHHHSSCSSCC------------SSHH---HHHHHHHTTCC-------CCCTTCCHHHHHHHHTTSCSSGGGST
T ss_pred             hhHHHHHHhhCCCCCCC------------cCHH---HHHHHHHcCCC-------CCCccCCHHHHHHHHHHccCCHhHCc
Confidence            99999999999999952            2222   22222332221       22346899999999999999999999


Q ss_pred             CHHH------HHcCCCCCCCCCCC
Q 005985          389 SCLD------ALRHPFLCGPRWRV  406 (666)
Q Consensus       389 Ta~e------lL~HPwf~~~~~~~  406 (666)
                      |++|      +++||||++.+|..
T Consensus       254 t~~e~~~~~~i~~Hpff~~i~w~~  277 (288)
T d1uu3a_         254 GCEEMEGYGPLKAHPFFESVTWEN  277 (288)
T ss_dssp             TSGGGTCHHHHHTSGGGTTCCCTT
T ss_pred             CHHHHcCCHHHHcCCccCCCCHHH
Confidence            9988      58999999988753


No 5  
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.3e-54  Score=457.25  Aligned_cols=266  Identities=16%  Similarity=0.206  Sum_probs=209.0

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      +.-++|++++.||+|+||    +||+|+++.     +++.||+|+++..   ...+.+.+|+.+|++++      |||||
T Consensus         3 l~~d~y~~~~~iG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~------HpnIv   67 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGG----VVFKVSHKP-----SGLVMARKLIHLEIKPAIRNQIIRELQVLHECN------SPYIV   67 (322)
T ss_dssp             CCGGGEEEEEEEECCSSC----CEEEEEETT-----TTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCC------CTTBC
T ss_pred             CCccCCEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCC------CCCCC
Confidence            345789999999999999    999999998     8999999999743   33456789999999997      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      +++++|.     +.+.+|||||||++|+|.+++.+.+         .+++                    ..++.++.||
T Consensus        68 ~l~~~~~-----~~~~~~iVmEy~~gg~L~~~l~~~~---------~l~~--------------------~~~~~~~~qi  113 (322)
T d1s9ja_          68 GFYGAFY-----SDGEISICMEHMDGGSLDQVLKKAG---------RIPE--------------------QILGKVSIAV  113 (322)
T ss_dssp             CEEEEEE-----CSSEEEEEEECCTTEEHHHHHHHHS---------SCCH--------------------HHHHHHHHHH
T ss_pred             cEEEEEE-----ECCEEEEEEEcCCCCcHHHHHhhcC---------CCCH--------------------HHHHHHHHHH
Confidence            9999999     7789999999999999999998754         4555                    5688999999


Q ss_pred             HHHHHHHHh-cCccccccccceEEEccCCCceEEeeeccccccCC-------CCCCccCcccccCcCCCCchhHHHHHHH
Q 005985          240 LIGVNYLHS-HGLAHTELRLENVHISPVDRHIKVRILGNAADFYE-------DGPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       240 l~aL~yLHs-~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~-------~~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      +.||+|||+ +||+||||||+|||++. ++.+||+|||+|+.+..       +++.|+|||++.+. .|+.++||||+||
T Consensus       114 l~aL~yLH~~~~IiHRDiKP~NILl~~-~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~-~y~~~~DiWSlGv  191 (322)
T d1s9ja_         114 IKGLTYLREKHKIMHRDVKPSNILVNS-RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGT-HYSVQSDIWSMGL  191 (322)
T ss_dssp             HHHHHHHHHHHCCCCSCCSGGGEEECT-TCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCS-CCCTTHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEccccCHHHeeECC-CCCEEEeeCCCccccCCCccccccCCccccCchHHcCC-CCCcHHHHHHHHH
Confidence            999999997 59999999999999998 89999999999986532       34789999987664 5999999999999


Q ss_pred             HHHHHHhCCCCChhhhh----hhhhccccCCCc-----------------------hhHHHHHHHHhhcCCCCCCCCccc
Q 005985          312 MMAKMVLRELMDPLIFT----KFKSFLTKGIDP-----------------------SCLREFLLQVLNRNSSSGNTGFQI  364 (666)
Q Consensus       312 iLyeLltG~~PF~~~~~----~~~~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~~~~~~~  364 (666)
                      ++|||++|++||.....    ........|...                       ....+.........++.     ..
T Consensus       192 il~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  266 (322)
T d1s9ja_         192 SLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPK-----LP  266 (322)
T ss_dssp             HHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCC-----CC
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCcc-----Cc
Confidence            99999999999963211    111111111110                       01111111112111111     01


Q ss_pred             ccCCcHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005985          365 LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPRW  404 (666)
Q Consensus       365 ~~~~s~~l~dLL~~mL~~DP~~RpTa~elL~HPwf~~~~~  404 (666)
                      ....|++++|||.+||++||++||||+|+|+||||++..+
T Consensus       267 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~  306 (322)
T d1s9ja_         267 SGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA  306 (322)
T ss_dssp             BTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCc
Confidence            1246889999999999999999999999999999987553


No 6  
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=3.1e-53  Score=445.82  Aligned_cols=250  Identities=19%  Similarity=0.224  Sum_probs=199.2

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh---hHHHHHHHHHHHHHhhhccCCCCCcceEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~  162 (666)
                      +.|++++.||+|+||    +||+|+++.     +++.||||++....   ....+.+|+.+|++++      |||||+++
T Consensus         9 d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~------HpnIv~l~   73 (307)
T d1a06a_           9 DIYDFRDVLGTGAFS----EVILAEDKR-----TQKLVAIKCIAKKALEGKEGSMENEIAVLHKIK------HPNIVALD   73 (307)
T ss_dssp             GTEEEEEESBSGGGG----GEEEEEETT-----TCCEEEEEEEEC----------CHHHHHHHTCC------CTTBCCEE
T ss_pred             cceEEEEEEeeccCe----EEEEEEECC-----CCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCC------CCCCCcEE
Confidence            679999999999999    999999998     89999999997532   2345678999999998      99999999


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 005985          163 GYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  242 (666)
Q Consensus       163 ~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~a  242 (666)
                      +++.     +++.+|||||||++|+|.++|...+         .++|                    ..++.++.||+.|
T Consensus        74 ~~~~-----~~~~~~lvmE~~~gg~L~~~l~~~~---------~l~e--------------------~~~~~~~~qi~~a  119 (307)
T d1a06a_          74 DIYE-----SGGHLYLIMQLVSGGELFDRIVEKG---------FYTE--------------------RDASRLIFQVLDA  119 (307)
T ss_dssp             EEEE-----CSSEEEEEECCCCSCBHHHHHHTCS---------CCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEeccCCCcHHHhhhccc---------CCCH--------------------HHHHHHHHHHHHH
Confidence            9999     7899999999999999999998754         4555                    5688999999999


Q ss_pred             HHHHHhcCccccccccceEEEcc--CCCceEEeeeccccccCCC--------CCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          243 VNYLHSHGLAHTELRLENVHISP--VDRHIKVRILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       243 L~yLHs~gIvHRDLKPeNILi~~--~~g~vKL~DFGlA~~~~~~--------~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      |+|||++||+||||||+|||+..  +++.+||+|||+|+.....        ++.|+|||++.+ ..|+.++|||||||+
T Consensus       120 l~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~-~~~~~~~DiwSlGvi  198 (307)
T d1a06a_         120 VKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ-KPYSKAVDCWSIGVI  198 (307)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHTT-CCCCTHHHHHHHHHH
T ss_pred             HHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcC-CCCCcHHHhhhhhHH
Confidence            99999999999999999999963  3689999999999865433        378999997654 569999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHH
Q 005985          313 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  392 (666)
Q Consensus       313 LyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~e  392 (666)
                      +|+|++|++||.+            ....   +....+......   ...+..+.+|+++++||.+||++||++|||++|
T Consensus       199 lyell~g~~Pf~~------------~~~~---~~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e  260 (307)
T d1a06a_         199 AYILLCGYPPFYD------------ENDA---KLFEQILKAEYE---FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQ  260 (307)
T ss_dssp             HHHHHHSSCSCCC------------SSHH---HHHHHHHTTCCC---CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCCC------------CCHH---HHHHHHhccCCC---CCCccccCCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            9999999999952            2221   222223222211   112344678999999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q 005985          393 ALRHPFLCGPR  403 (666)
Q Consensus       393 lL~HPwf~~~~  403 (666)
                      +|+||||++..
T Consensus       261 il~hp~~~~~~  271 (307)
T d1a06a_         261 ALQHPWIAGDT  271 (307)
T ss_dssp             HHHSTTTTSSC
T ss_pred             HhcCHhhCCCC
Confidence            99999998744


No 7  
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-53  Score=444.28  Aligned_cols=249  Identities=18%  Similarity=0.220  Sum_probs=207.9

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch--hhHHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      +.|++++.||+|+||    +||+|+++.     +++.||||++...  ...+.+.+|+++|++++      |||||++++
T Consensus        12 d~Y~i~~~iG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~------HpnIv~l~~   76 (288)
T d2jfla1          12 DFWEIIGELGDGAFG----KVYKAQNKE-----TSVLAAAKVIDTKSEEELEDYMVEIDILASCD------HPNIVKLLD   76 (288)
T ss_dssp             GTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECSSSGGGGGTHHHHHHHHHCC------CTTBCCEEE
T ss_pred             cCeEEeEEEeeCCCc----EEEEEEECC-----CCeEEEEEEECcCCHHHHHHHHHHHHHHHhCC------CCCCCeEEE
Confidence            579999999999999    999999998     8999999999753  33456789999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      ++.     +.+.+|||||||++|+|.+++.+.+        ..++|                    ..++.++.||+.||
T Consensus        77 ~~~-----~~~~~~lvmEy~~~g~L~~~~~~~~--------~~l~e--------------------~~~~~i~~qi~~gL  123 (288)
T d2jfla1          77 AFY-----YENNLWILIEFCAGGAVDAVMLELE--------RPLTE--------------------SQIQVVCKQTLDAL  123 (288)
T ss_dssp             EEE-----ETTEEEEEEECCTTEEHHHHHHHHT--------SCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEe-----eCCeEEEEEecCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            999     6789999999999999999987642        14555                    56889999999999


Q ss_pred             HHHHhcCccccccccceEEEccCCCceEEeeeccccccC---------CCCCCccCccccc----CcCCCCchhHHHHHH
Q 005985          244 NYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFY---------EDGPNNSSPDSNM----DRRQMMIAFDMRCVG  310 (666)
Q Consensus       244 ~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~---------~~~~~Y~APEvl~----~~~~ys~ksDIWSLG  310 (666)
                      +|||++||+||||||+|||++. ++.+||+|||+|+...         .+.+.|+|||++.    ....|+.++||||||
T Consensus       124 ~ylH~~~ivHrDiKp~NIll~~-~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlG  202 (288)
T d2jfla1         124 NYLHDNKIIHRDLKAGNILFTL-DGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLG  202 (288)
T ss_dssp             HHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHH
T ss_pred             HHHHHCCEEEeecChhheeECC-CCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHH
Confidence            9999999999999999999998 8999999999997542         2348899999874    345689999999999


Q ss_pred             HHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCH
Q 005985          311 FMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISC  390 (666)
Q Consensus       311 viLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa  390 (666)
                      |++|||++|++||.+.            ...+.   +..+.....+    .+.....+|+++++||.+||++||++|||+
T Consensus       203 vilyemltg~~Pf~~~------------~~~~~---~~~i~~~~~~----~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  263 (288)
T d2jfla1         203 ITLIEMAEIEPPHHEL------------NPMRV---LLKIAKSEPP----TLAQPSRWSSNFKDFLKKCLEKNVDARWTT  263 (288)
T ss_dssp             HHHHHHHHSSCTTTTS------------CGGGH---HHHHHHSCCC----CCSSGGGSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             HHHHHHhhCCCCCCCC------------CHHHH---HHHHHcCCCC----CCCccccCCHHHHHHHHHHccCChhHCcCH
Confidence            9999999999999632            22111   1222222221    223345789999999999999999999999


Q ss_pred             HHHHcCCCCCCC
Q 005985          391 LDALRHPFLCGP  402 (666)
Q Consensus       391 ~elL~HPwf~~~  402 (666)
                      +|+|+||||+..
T Consensus       264 ~ell~hp~~~~~  275 (288)
T d2jfla1         264 SQLLQHPFVTVD  275 (288)
T ss_dssp             HHHTTSGGGCCC
T ss_pred             HHHhcCcccCCC
Confidence            999999999853


No 8  
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Probab=100.00  E-value=6e-53  Score=451.43  Aligned_cols=255  Identities=16%  Similarity=0.211  Sum_probs=211.7

Q ss_pred             ccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch--hhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        84 ~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      .+++|++++.||+|+||    +||+|+++.     +++.||||++...  ...+.+.+|+.+|++|+      |||||++
T Consensus        24 il~~Y~i~~~lG~G~fg----~Vy~~~~~~-----~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~------HpnIv~~   88 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFG----VVHRVTERA-----TGNNFAAKFVMTPHESDKETVRKEIQTMSVLR------HPTLVNL   88 (350)
T ss_dssp             GGGTEEEEEEEEEETTE----EEEEEEETT-----TTEEEEEEEECCCSHHHHHHHHHHHHHHHHTC------CTTBCCE
T ss_pred             CccCeEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEcccchhhHHHHHHHHHHHHhCC------CCCCCcE
Confidence            36899999999999999    999999998     8999999999753  33456789999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.     +.+.+|||||||++|+|.+++.+..        ..++|                    ..++.|++||+.
T Consensus        89 ~~~~~-----~~~~~~ivmE~~~gg~L~~~l~~~~--------~~l~e--------------------~~~~~i~~qi~~  135 (350)
T d1koaa2          89 HDAFE-----DDNEMVMIYEFMSGGELFEKVADEH--------NKMSE--------------------DEAVEYMRQVCK  135 (350)
T ss_dssp             EEEEE-----ETTEEEEEECCCCSCBHHHHHTCTT--------SCBCH--------------------HHHHHHHHHHHH
T ss_pred             EEEEE-----ECCEEEEEEEcCCCCCHHHHHHhhc--------CCCCH--------------------HHHHHHHHHHHH
Confidence            99999     7789999999999999999996532        24555                    568999999999


Q ss_pred             HHHHHHhcCccccccccceEEEcc-CCCceEEeeeccccccCCC--------CCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISP-VDRHIKVRILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~-~~g~vKL~DFGlA~~~~~~--------~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      ||+|||++|||||||||+|||++. .++.+||+|||+|+.+...        ++.|+|||++.+ ..|+.++|||||||+
T Consensus       136 aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~-~~~~~~~DiwSlGvi  214 (350)
T d1koaa2         136 GLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEG-KPVGYYTDMWSVGVL  214 (350)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHT-CCBCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcC-CCCChhHhhhhhhHH
Confidence            999999999999999999999974 2578999999999876543        378999997665 458999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHH
Q 005985          313 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  392 (666)
Q Consensus       313 LyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~e  392 (666)
                      +|+|++|++||.            +.+...   .+..+......   ......+.+|+++++||.+||++||++|||++|
T Consensus       215 lyell~G~~Pf~------------~~~~~~---~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e  276 (350)
T d1koaa2         215 SYILLSGLSPFG------------GENDDE---TLRNVKSCDWN---MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQ  276 (350)
T ss_dssp             HHHHHHSSCSSC------------CSSHHH---HHHHHHHTCCC---SCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             HHHHHhCCCCCC------------CCCHHH---HHHHHHhCCCC---CCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999999985            222222   22222222111   112344578999999999999999999999999


Q ss_pred             HHcCCCCCCCCCC
Q 005985          393 ALRHPFLCGPRWR  405 (666)
Q Consensus       393 lL~HPwf~~~~~~  405 (666)
                      +|+||||+...++
T Consensus       277 il~hp~~~~~~~~  289 (350)
T d1koaa2         277 ALEHPWLTPGNAP  289 (350)
T ss_dssp             HHHSTTTSCTTCC
T ss_pred             HhcCcccCCCCCC
Confidence            9999999987654


No 9  
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.3e-53  Score=449.54  Aligned_cols=249  Identities=21%  Similarity=0.270  Sum_probs=211.8

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      +.+++|++++.||+|+||    .||+|+++.     +++.||||++++..     ..+.+.+|+.+|+.++      |||
T Consensus         2 i~l~dy~~~~~lG~G~fg----~V~~~~~~~-----~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~------hp~   66 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFG----KVILVREKA-----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR------HPF   66 (337)
T ss_dssp             CCGGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC------CTT
T ss_pred             CchHhcEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCC------CCC
Confidence            567899999999999999    999999998     89999999997532     2356789999999998      999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||+++++|.     +.+.+|+|||||++|+|.+++.+.+         .++|                    ..++.+++
T Consensus        67 Iv~l~~~~~-----~~~~~~iv~ey~~gg~L~~~~~~~~---------~~~e--------------------~~~~~~~~  112 (337)
T d1o6la_          67 LTALKYAFQ-----THDRLCFVMEYANGGELFFHLSRER---------VFTE--------------------ERARFYGA  112 (337)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEECCTTCBHHHHHHHHS---------CCCH--------------------HHHHHHHH
T ss_pred             EEEEEeeec-----cccccccceeccCCCchhhhhhccc---------CCcH--------------------HHHHHHHH
Confidence            999999999     8899999999999999999998864         5666                    55899999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHH
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRC  308 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWS  308 (666)
                      ||+.||+|||++||+||||||+|||++. +|.+||+|||+|+.....         ++.|+|||++.+ ..|+.++||||
T Consensus       113 qil~al~ylH~~~iiHRDlKP~NILl~~-~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~-~~y~~~~DiwS  190 (337)
T d1o6la_         113 EIVSALEYLHSRDVVYRDIKLENLMLDK-DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED-NDYGRAVDWWG  190 (337)
T ss_dssp             HHHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSS-SCBCTTHHHHH
T ss_pred             HHhhhhhhhhhcCccccccCHHHeEecC-CCCEEEeecccccccccCCcccccceeCHHHhhhhhccC-CCCChhhcccc
Confidence            9999999999999999999999999998 899999999999865432         278999996655 45899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC
Q 005985          309 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  388 (666)
Q Consensus       309 LGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp  388 (666)
                      |||++|||++|++||.            +.+...+   +..+.....       .....+|+++++||.+||++||++|+
T Consensus       191 lGvilyeml~G~~pf~------------~~~~~~~---~~~i~~~~~-------~~p~~~s~~~~dli~~~L~~dP~~R~  248 (337)
T d1o6la_         191 LGVVMYEMMCGRLPFY------------NQDHERL---FELILMEEI-------RFPRTLSPEAKSLLAGLLKKDPKQRL  248 (337)
T ss_dssp             HHHHHHHHHHSSCSSC------------CSSHHHH---HHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSTTTST
T ss_pred             hhhHHHHHHHCCCCCC------------CcCHHHH---HHHHhcCCC-------CCCccCCHHHHHHHHhhccCCchhhc
Confidence            9999999999999985            2222222   222222221       22356899999999999999999999


Q ss_pred             C-----HHHHHcCCCCCCCCC
Q 005985          389 S-----CLDALRHPFLCGPRW  404 (666)
Q Consensus       389 T-----a~elL~HPwf~~~~~  404 (666)
                      +     ++|+++||||.+..|
T Consensus       249 ~~~~~~~~eil~Hp~f~~i~~  269 (337)
T d1o6la_         249 GGGPSDAKEVMEHRFFLSINW  269 (337)
T ss_dssp             TCSTTTHHHHHTSGGGTTCCH
T ss_pred             ccccccHHHHHcCcccccCCH
Confidence            4     999999999998764


No 10 
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.9e-53  Score=437.88  Aligned_cols=249  Identities=17%  Similarity=0.201  Sum_probs=196.0

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++...    ...+.+.+|+++|++++      |||||+
T Consensus         3 ~edy~~~~~iG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~   67 (269)
T d2java1           3 AEDYEVLYTIGTGSYG----RCQKIRRKS-----DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELK------HPNIVR   67 (269)
T ss_dssp             GGGEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCC------CTTBCC
T ss_pred             chhCEEeEEEecCCCe----EEEEEEECC-----CCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCC------CCCEee
Confidence            3789999999999999    999999998     8999999999743    22345689999999998      999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      +++++.+.   ..+.+|||||||++|+|.+++.+..     .....++|                    ..++.++.||+
T Consensus        68 ~~~~~~~~---~~~~~~ivmEy~~~g~L~~~i~~~~-----~~~~~l~e--------------------~~~~~i~~qi~  119 (269)
T d2java1          68 YYDRIIDR---TNTTLYIVMEYCEGGDLASVITKGT-----KERQYLDE--------------------EFVLRVMTQLT  119 (269)
T ss_dssp             EEEEEEC-------CEEEEEECCTTEEHHHHHHHHH-----HHTCCCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEEEeC---CCCEEEEEEecCCCCcHHHHHHhcc-----ccCCCCCH--------------------HHHHHHHHHHH
Confidence            99999732   4567999999999999999997531     11124555                    66899999999


Q ss_pred             HHHHHHHhcC-----ccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHH
Q 005985          241 IGVNYLHSHG-----LAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDM  306 (666)
Q Consensus       241 ~aL~yLHs~g-----IvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDI  306 (666)
                      .||+|||++|     |+||||||+|||++. ++.+||+|||+|+.+...         ++.|+|||++. ...|+.++||
T Consensus       120 ~al~ylH~~~~~~~~IiHrDiKp~NIll~~-~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~-~~~~~~~~DI  197 (269)
T d2java1         120 LALKECHRRSDGGHTVLHRDLKPANVFLDG-KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMN-RMSYNEKSDI  197 (269)
T ss_dssp             HHHHHHHHHCC---------CCGGGEEECT-TSCEEECCHHHHHHC-----------CCCSCCCHHHHT-TCCCCHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEeCcCchhhcCcCC-CCcEEEeeccceeecccCCCccccCCCCcccCCHHHHc-CCCCChHHHH
Confidence            9999999976     999999999999998 899999999999876432         37899999764 4569999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          307 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       307 WSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      |||||++|||++|++||..            .+..++.   ..+.....+      .....+|+++++||.+||+.||++
T Consensus       198 wSlGvilyel~tg~~Pf~~------------~~~~~~~---~~i~~~~~~------~~~~~~s~~l~~li~~~L~~dp~~  256 (269)
T d2java1         198 WSLGCLLYELCALMPPFTA------------FSQKELA---GKIREGKFR------RIPYRYSDELNEIITRMLNLKDYH  256 (269)
T ss_dssp             HHHHHHHHHHHHSSCSCCC------------SSHHHHH---HHHHHTCCC------CCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             HhhCHHHHHHhhCCCCCCC------------CCHHHHH---HHHHcCCCC------CCCcccCHHHHHHHHHHcCCChhH
Confidence            9999999999999999852            2222222   222222211      123467899999999999999999


Q ss_pred             CCCHHHHHcCCCC
Q 005985          387 RISCLDALRHPFL  399 (666)
Q Consensus       387 RpTa~elL~HPwf  399 (666)
                      |||++|+|+|||+
T Consensus       257 Rps~~ell~hp~i  269 (269)
T d2java1         257 RPSVEEILENPLI  269 (269)
T ss_dssp             SCCHHHHHTSTTC
T ss_pred             CcCHHHHHhCCcC
Confidence            9999999999996


No 11 
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=1.2e-52  Score=451.61  Aligned_cols=255  Identities=16%  Similarity=0.181  Sum_probs=208.5

Q ss_pred             ccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCCcc
Q 005985           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (666)
Q Consensus        84 ~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (666)
                      .+++|++++.||+|+||    .||+|+++.     +++.||||++.+..     ......+|..+++.++   .+.||||
T Consensus         2 slddy~i~~~lG~G~fg----~Vy~~~~~~-----t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~---~~~hpnI   69 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFG----EVYGCRKAD-----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS---TGDCPFI   69 (364)
T ss_dssp             CSTTEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHS---SSCCTTB
T ss_pred             CHHhCeeeeEEecCCCe----EEEEEEECC-----CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHh---cCCCCcE
Confidence            57899999999999999    999999998     89999999997432     2233455655444443   2249999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      |+++++|.     +.+.+|||||||++|+|.++|.+.+         .++|                    ..++.|+.|
T Consensus        70 v~l~~~~~-----~~~~~~ivmE~~~gg~L~~~l~~~~---------~~~e--------------------~~~~~~~~q  115 (364)
T d1omwa3          70 VCMSYAFH-----TPDKLSFILDLMNGGDLHYHLSQHG---------VFSE--------------------ADMRFYAAE  115 (364)
T ss_dssp             CCEEEEEE-----CSSEEEEEECCCCSCBHHHHHHHHC---------SCCH--------------------HHHHHHHHH
T ss_pred             EEEEEEEE-----ECCEEEEEEEecCCCcHHHHHHhcc---------cccH--------------------HHHHHHHHH
Confidence            99999999     7789999999999999999998754         4555                    568899999


Q ss_pred             HHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-------CCCccCcccccCcCCCCchhHHHHHHH
Q 005985          239 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       239 Il~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-------~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      |+.||+|||++|||||||||+|||++. ++.+||+|||+|+.+...       ++.|+|||++.....|+.++|||||||
T Consensus       116 i~~aL~ylH~~~iiHrDlKP~NILl~~-~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGv  194 (364)
T d1omwa3         116 IILGLEHMHNRFVVYRDLKPANILLDE-HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGC  194 (364)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECS-SSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCccceeeccceeEEcC-CCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHH
Confidence            999999999999999999999999998 899999999999876543       378999998877777999999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC--
Q 005985          312 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS--  389 (666)
Q Consensus       312 iLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT--  389 (666)
                      ++|||++|++||...            ................       ....+.+|+++++||.+||++||++|||  
T Consensus       195 ilyemltG~~Pf~~~------------~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  255 (364)
T d1omwa3         195 MLFKLLRGHSPFRQH------------KTKDKHEIDRMTLTMA-------VELPDSFSPELRSLLEGLLQRDVNRRLGCL  255 (364)
T ss_dssp             HHHHHHHSSCSSCSS------------CSSCHHHHHHHSSSCC-------CCCCSSSCHHHHHHHHHHTCSSTTTSTTTS
T ss_pred             HHHHHHhCCCCCCCC------------CHHHHHHHHHhcccCC-------CCCCCCCCHHHHHHHHHHcccCHHHhCCCc
Confidence            999999999999621            1111222222222111       1234568999999999999999999999  


Q ss_pred             ---HHHHHcCCCCCCCCC
Q 005985          390 ---CLDALRHPFLCGPRW  404 (666)
Q Consensus       390 ---a~elL~HPwf~~~~~  404 (666)
                         |+|+++||||++.+|
T Consensus       256 ~~~a~eil~Hp~f~~i~~  273 (364)
T d1omwa3         256 GRGAQEVKESPFFRSLDW  273 (364)
T ss_dssp             SSTHHHHHTSGGGTTCCH
T ss_pred             ccCHHHHHcCccccCCCH
Confidence               799999999999774


No 12 
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.9e-53  Score=439.91  Aligned_cols=252  Identities=19%  Similarity=0.225  Sum_probs=206.3

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh--------hHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      ++|++++.||+|+||    +||+|+++.     +++.||||++.+..        ..+.+.+|+.+|++|+      |||
T Consensus        10 d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~------Hpn   74 (293)
T d1jksa_          10 DYYDTGEELGSGQFA----VVKKCREKS-----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ------HPN   74 (293)
T ss_dssp             GTEEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCC------CTT
T ss_pred             cCEEEeEEEecCCCe----EEEEEEECC-----CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCC------CCC
Confidence            679999999999999    999999998     89999999996421        2356789999999998      999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||+++++|.     +.+.+|||||||++|+|.++|...+         .+++                    ..++.+++
T Consensus        75 Iv~~~~~~~-----~~~~~~iv~E~~~gg~L~~~i~~~~---------~l~~--------------------~~~~~~~~  120 (293)
T d1jksa_          75 VITLHEVYE-----NKTDVILILELVAGGELFDFLAEKE---------SLTE--------------------EEATEFLK  120 (293)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEECCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHH
T ss_pred             CCcEEEEEE-----ECCEEEEEEEcCCCccccchhcccc---------ccch--------------------hHHHHHHH
Confidence            999999999     7899999999999999999998754         4555                    56889999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCC---CceEEeeeccccccCCCC--------CCccCcccccCcCCCCchhHH
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVD---RHIKVRILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDM  306 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~---g~vKL~DFGlA~~~~~~~--------~~Y~APEvl~~~~~ys~ksDI  306 (666)
                      ||+.||+|||++||+||||||+|||++..+   ..+||+|||+|.......        +.|+|||++.+ ..|+.++||
T Consensus       121 qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~-~~~~~~~Di  199 (293)
T d1jksa_         121 QILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY-EPLGLEADM  199 (293)
T ss_dssp             HHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTT-CCBCTHHHH
T ss_pred             HHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcC-CCCCCcccc
Confidence            999999999999999999999999998732   259999999998765432        67999997654 568999999


Q ss_pred             HHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          307 RCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       307 WSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      |||||++|||++|++||.+            .+..+.   +..+......   ...+..+.+|+++++||.+||++||++
T Consensus       200 wSlGvilyell~g~~Pf~~------------~~~~~~---~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dP~~  261 (293)
T d1jksa_         200 WSIGVITYILLSGASPFLG------------DTKQET---LANVSAVNYE---FEDEYFSNTSALAKDFIRRLLVKDPKK  261 (293)
T ss_dssp             HHHHHHHHHHHHSSCSSCC------------SSHHHH---HHHHHTTCCC---CCHHHHTTSCHHHHHHHHTTSCSSGGG
T ss_pred             hhhhHHHHHHHcCCCCCCC------------CCHHHH---HHHHHhcCCC---CCchhcCCCCHHHHHHHHHHccCChhH
Confidence            9999999999999999852            222221   2222221111   112334578999999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCC
Q 005985          387 RISCLDALRHPFLCGPRWR  405 (666)
Q Consensus       387 RpTa~elL~HPwf~~~~~~  405 (666)
                      |||++|+|+||||+...+.
T Consensus       262 R~s~~eil~hp~~~~~~~~  280 (293)
T d1jksa_         262 RMTIQDSLQHPWIKPKDTQ  280 (293)
T ss_dssp             SCCHHHHHHSTTTCC----
T ss_pred             CcCHHHHhcCcccCCCChh
Confidence            9999999999999986643


No 13 
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-52  Score=433.32  Aligned_cols=247  Identities=19%  Similarity=0.245  Sum_probs=201.0

Q ss_pred             eEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh----hHHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        88 Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      |++.++||+|+||    +||+|+++.     +++.||+|++....    ..+.+.+|+++|++++      |||||++++
T Consensus        11 ~~~~~~iG~G~fg----~Vy~~~~~~-----~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~~   75 (270)
T d1t4ha_          11 LKFDIEIGRGSFK----TVYKGLDTE-----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ------HPNIVRFYD   75 (270)
T ss_dssp             EEEEEEEEECSSE----EEEEEEETT-----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCC------CTTBCCEEE
T ss_pred             EEeeeEEecCcCc----EEEEEEECC-----CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCC------CCCeeeEEE
Confidence            4788899999999    999999998     89999999987432    3345689999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      ++.+. ......+|||||||++|+|.+++.+.+         .+++                    ..++.+++||+.||
T Consensus        76 ~~~~~-~~~~~~~~ivmE~~~~g~L~~~l~~~~---------~~~~--------------------~~~~~~~~qi~~gl  125 (270)
T d1t4ha_          76 SWEST-VKGKKCIVLVTELMTSGTLKTYLKRFK---------VMKI--------------------KVLRSWCRQILKGL  125 (270)
T ss_dssp             EEEEE-SSSCEEEEEEEECCCSCBHHHHHHHHS---------SCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEeec-cccCCEEEEEEeCCCCCcHHHHHhccc---------cccH--------------------HHHHHHHHHHHHHH
Confidence            98742 123567999999999999999998753         4554                    56888999999999


Q ss_pred             HHHHhcC--ccccccccceEEEccCCCceEEeeeccccccCCC-------CCCccCcccccCcCCCCchhHHHHHHHHHH
Q 005985          244 NYLHSHG--LAHTELRLENVHISPVDRHIKVRILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMA  314 (666)
Q Consensus       244 ~yLHs~g--IvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-------~~~Y~APEvl~~~~~ys~ksDIWSLGviLy  314 (666)
                      +|||++|  |+||||||+|||++..++.+||+|||+|+.....       ++.|+|||++.+  .|+.++|||||||++|
T Consensus       126 ~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~--~~~~~~DIwSlGvily  203 (270)
T d1t4ha_         126 QFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE--KYDESVDVYAFGMCML  203 (270)
T ss_dssp             HHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT--CCCTHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC--CCCCcCchhhHHHHHH
Confidence            9999998  9999999999999765789999999999765432       378999997643  5999999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005985          315 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  394 (666)
Q Consensus       315 eLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL  394 (666)
                      ||++|++||.+...           ..   .....+.....+     .......++++++||.+||++||++|||++|+|
T Consensus       204 el~~g~~Pf~~~~~-----------~~---~~~~~i~~~~~~-----~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell  264 (270)
T d1t4ha_         204 EMATSEYPYSECQN-----------AA---QIYRRVTSGVKP-----ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  264 (270)
T ss_dssp             HHHHSSCTTTTCSS-----------HH---HHHHHHTTTCCC-----GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             HHHHCCCCCCCccc-----------HH---HHHHHHHcCCCC-----cccCccCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence            99999999963211           11   111222221111     123345788999999999999999999999999


Q ss_pred             cCCCCC
Q 005985          395 RHPFLC  400 (666)
Q Consensus       395 ~HPwf~  400 (666)
                      +||||+
T Consensus       265 ~Hp~fk  270 (270)
T d1t4ha_         265 NHAFFQ  270 (270)
T ss_dssp             TSGGGC
T ss_pred             CCcccC
Confidence            999995


No 14 
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}
Probab=100.00  E-value=9.9e-53  Score=450.11  Aligned_cols=252  Identities=19%  Similarity=0.236  Sum_probs=209.6

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch--hhHHHHHHHHHHHHHhhhccCCCCCcceEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV--QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~--~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~  162 (666)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++...  .....+.+|+.+|++|+      |||||+++
T Consensus        28 ~d~Y~i~~~lG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~------HpnIv~~~   92 (352)
T d1koba_          28 YDYYDILEELGSGAFG----VVHRCVEKA-----TGRVFVAKFINTPYPLDKYTVKNEISIMNQLH------HPKLINLH   92 (352)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCC------STTBCCEE
T ss_pred             ccceEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEECCcchhHHHHHHHHHHHHHhCC------CCCCCcEE
Confidence            4789999999999999    999999998     8999999999753  23455689999999998      99999999


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 005985          163 GYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  242 (666)
Q Consensus       163 ~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~a  242 (666)
                      ++|.     +++.+|||||||++|+|.+++...+        .+|+|                    ..++.|++||+.|
T Consensus        93 ~~~~-----~~~~~~ivmE~~~gg~L~~~~~~~~--------~~l~e--------------------~~~~~i~~qi~~a  139 (352)
T d1koba_          93 DAFE-----DKYEMVLILEFLSGGELFDRIAAED--------YKMSE--------------------AEVINYMRQACEG  139 (352)
T ss_dssp             EEEE-----CSSEEEEEEECCCCCBHHHHTTCTT--------CCBCH--------------------HHHHHHHHHHHHH
T ss_pred             EEEE-----ECCEEEEEEEcCCCChHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHH
Confidence            9999     7899999999999999999886542        24555                    5689999999999


Q ss_pred             HHHHHhcCccccccccceEEEcc-CCCceEEeeeccccccCCCC--------CCccCcccccCcCCCCchhHHHHHHHHH
Q 005985          243 VNYLHSHGLAHTELRLENVHISP-VDRHIKVRILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  313 (666)
Q Consensus       243 L~yLHs~gIvHRDLKPeNILi~~-~~g~vKL~DFGlA~~~~~~~--------~~Y~APEvl~~~~~ys~ksDIWSLGviL  313 (666)
                      |+|||++||+||||||+|||++. .++.+||+|||+|+.+....        +.|+|||++.+ ..|+.++|||||||++
T Consensus       140 L~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlGvil  218 (352)
T d1koba_         140 LKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDR-EPVGFYTDMWAIGVLG  218 (352)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTT-CCBCHHHHHHHHHHHH
T ss_pred             HHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcC-CCCCCccchHHHHHHH
Confidence            99999999999999999999983 36899999999998775443        78999996654 5699999999999999


Q ss_pred             HHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHH
Q 005985          314 AKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA  393 (666)
Q Consensus       314 yeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~el  393 (666)
                      |+|++|++||.+            .....   .+..+.......   ....++.+|+++++||.+||++||.+|||++|+
T Consensus       219 yelltG~~Pf~~------------~~~~~---~~~~i~~~~~~~---~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei  280 (352)
T d1koba_         219 YVLLSGLSPFAG------------EDDLE---TLQNVKRCDWEF---DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDA  280 (352)
T ss_dssp             HHHHHSCCSSCC------------SSHHH---HHHHHHHCCCCC---CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             HHHHhCCCCCCC------------CCHHH---HHHHHHhCCCCC---CcccccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            999999999962            22222   222222222111   112345789999999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 005985          394 LRHPFLCGPR  403 (666)
Q Consensus       394 L~HPwf~~~~  403 (666)
                      |+||||++..
T Consensus       281 l~Hp~~~~~~  290 (352)
T d1koba_         281 LEHPWLKGDH  290 (352)
T ss_dssp             HTSTTTSSCC
T ss_pred             hcCHhhCCCc
Confidence            9999998754


No 15 
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.7e-52  Score=441.84  Aligned_cols=249  Identities=17%  Similarity=0.250  Sum_probs=211.1

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      |.+++|++++.||+|+||    +||+|+++.     +++.||||++++..     ..+.+.+|+.+|+.++      |||
T Consensus         1 ~sl~dy~i~~~lG~G~fg----~Vy~a~~~~-----~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~------Hpn   65 (316)
T d1fota_           1 YSLQDFQILRTLGTGSFG----RVHLIRSRH-----NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT------HPF   65 (316)
T ss_dssp             CCGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCC------BTT
T ss_pred             CchhHeEEEEEEecCcCc----EEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhcc------CcC
Confidence            457899999999999999    999999998     89999999997432     2356789999999998      999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||++++++.     +.+.+|+|||||.+|+|.+++....         .+++                    ..++.++.
T Consensus        66 Iv~~~~~~~-----~~~~~~ivmE~~~gg~l~~~~~~~~---------~~~~--------------------~~~~~~~~  111 (316)
T d1fota_          66 IIRMWGTFQ-----DAQQIFMIMDYIEGGELFSLLRKSQ---------RFPN--------------------PVAKFYAA  111 (316)
T ss_dssp             BCCEEEEEE-----CSSEEEEEECCCCSCBHHHHHHHTS---------SCCH--------------------HHHHHHHH
T ss_pred             hhheeeeEe-----eCCeeeeEeeecCCccccccccccc---------cccc--------------------cHHHHHHH
Confidence            999999999     7899999999999999999998764         3444                    55788999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC------CCCccCcccccCcCCCCchhHHHHHHH
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~------~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||++. ...|+.++|||||||
T Consensus       112 qi~~al~~lH~~~iiHrDiKp~NILl~~-~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~-~~~y~~~~DiwSlGv  189 (316)
T d1fota_         112 EVCLALEYLHSKDIIYRDLKPENILLDK-NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVS-TKPYNKSIDWWSFGI  189 (316)
T ss_dssp             HHHHHHHHHHTTTEECCCCCGGGEEECT-TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHT-TCCBCTTHHHHHHHH
T ss_pred             HHHHhhhhhccCcEEccccCchheeEcC-CCCEEEecCccceEeccccccccCcccccCHHHHc-CCCCCchhhccccch
Confidence            9999999999999999999999999998 899999999999876543      37899999764 445899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC---
Q 005985          312 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI---  388 (666)
Q Consensus       312 iLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp---  388 (666)
                      ++|+|++|++||.+            .+..   +.+..+.....       ...+.+++++++||.+||++||.+|+   
T Consensus       190 ilyemltG~~Pf~~------------~~~~---~~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dp~~R~~~~  247 (316)
T d1fota_         190 LIYEMLAGYTPFYD------------SNTM---KTYEKILNAEL-------RFPPFFNEDVKDLLSRLITRDLSQRLGNL  247 (316)
T ss_dssp             HHHHHHHSSCTTCC------------SSHH---HHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSCTTTCTTSS
T ss_pred             hHHHHHhCCCCCCC------------cCHH---HHHHHHHcCCC-------CCCCCCCHHHHHHHHHHhhhCHHhccccc
Confidence            99999999999952            2222   22223333221       22346789999999999999999996   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 005985          389 --SCLDALRHPFLCGPRW  404 (666)
Q Consensus       389 --Ta~elL~HPwf~~~~~  404 (666)
                        |++++|+||||++..|
T Consensus       248 r~t~~~il~Hp~f~~i~~  265 (316)
T d1fota_         248 QNGTEDVKNHPWFKEVVW  265 (316)
T ss_dssp             TTTTHHHHTSGGGSSCCH
T ss_pred             hhhHHHHHcCcccccCCH
Confidence              9999999999999875


No 16 
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-52  Score=437.31  Aligned_cols=267  Identities=21%  Similarity=0.228  Sum_probs=202.6

Q ss_pred             EEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhh-------HHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-------QRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~-------~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      +.++.||+|+||    +||+|+++.     +++.||||+++....       .+.+.+|+.+|++++      |||||++
T Consensus         1 E~l~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~------hpnIv~~   65 (299)
T d1ua2a_           1 EKLDFLGEGQFA----TVYKARDKN-----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS------HPNIIGL   65 (299)
T ss_dssp             CEEEEEEEETTE----EEEEEECSS-----CCSEEEEEEC------------CTHHHHHHHHHHHCC------CTTBCCE
T ss_pred             CcceEeccCcCe----EEEEEEECC-----CCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCC------CCCEeEE
Confidence            357899999999    999999998     899999999874321       235689999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.     +++.+|||||||.+|++..++...+         .++|                    ..++.+++||+.
T Consensus        66 ~~~~~-----~~~~~~ivmE~~~~~~~~~~~~~~~---------~l~~--------------------~~~~~~~~qil~  111 (299)
T d1ua2a_          66 LDAFG-----HKSNISLVFDFMETDLEVIIKDNSL---------VLTP--------------------SHIKAYMLMTLQ  111 (299)
T ss_dssp             EEEEC-----CTTCCEEEEECCSEEHHHHHTTCCS---------SCCS--------------------SHHHHHHHHHHH
T ss_pred             Eeeec-----cCCceeehhhhhcchHHhhhhhccc---------CCCH--------------------HHHHHHHHHHHH
Confidence            99999     7788999999999976666654432         4555                    458889999999


Q ss_pred             HHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+.....         ++.|+|||++.....|+.++|||||||+
T Consensus       112 aL~~lH~~~iiHrDiKp~NIli~~-~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvi  190 (299)
T d1ua2a_         112 GLEYLHQHWILHRDLKPNNLLLDE-NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCI  190 (299)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHH
T ss_pred             HHHHhhccceecccCCcceEEecC-CCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchH
Confidence            999999999999999999999998 999999999999766442         3789999988878889999999999999


Q ss_pred             HHHHHhCCCCChh---hhhhhhhccccCCCchhHHHHHHHHhhc--CCCCCCCC-cccccCCcHHHHHHHHHhhhcCcCC
Q 005985          313 MAKMVLRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNR--NSSSGNTG-FQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       313 LyeLltG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~~~~~~~~-~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      +|||++|.+||..   .+....++...|.+..............  ........ ....+..++++++||.+||++||++
T Consensus       191 l~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~  270 (299)
T d1ua2a_         191 LAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCA  270 (299)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTT
T ss_pred             HHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhh
Confidence            9999999999962   2222222222222211100000000000  00000000 0123467899999999999999999


Q ss_pred             CCCHHHHHcCCCCCCCCCC
Q 005985          387 RISCLDALRHPFLCGPRWR  405 (666)
Q Consensus       387 RpTa~elL~HPwf~~~~~~  405 (666)
                      ||||+|+|+||||++.+.+
T Consensus       271 R~sa~e~L~Hp~f~~~p~p  289 (299)
T d1ua2a_         271 RITATQALKMKYFSNRPGP  289 (299)
T ss_dssp             SCCHHHHHTSGGGTSSSCC
T ss_pred             CcCHHHHhCCHhhCCCCCC
Confidence            9999999999999987643


No 17 
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00  E-value=4.7e-52  Score=430.57  Aligned_cols=251  Identities=21%  Similarity=0.254  Sum_probs=210.0

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----------hHHHHHHHHHHHHHhhhccCC
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----------AQRRGRRAIEVLKKLVRRRLM  153 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----------~~~~~~rEi~iL~~L~~~~~~  153 (666)
                      .++|++++.||+|+||    +||+|+++.     +++.||||++.+..           ..+.+.+|+.+|++|+     
T Consensus         2 ~~~y~~~~~iG~G~~g----~V~~~~~~~-----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----   67 (277)
T d1phka_           2 YENYEPKEILGRGVSS----VVRRCIHKP-----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----   67 (277)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             cccCEEceEEecCcCe----EEEEEEECC-----CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            4799999999999999    999999988     89999999986421           2235689999999997     


Q ss_pred             CCCcceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHH
Q 005985          154 YHSYSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIR  233 (666)
Q Consensus       154 ~HpnIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~  233 (666)
                      .|||||++++++.     +++.+|||||||++|||.++|..++         .++|                    ..++
T Consensus        68 ~hpnIv~~~~~~~-----~~~~~~ivmE~~~~g~L~~~l~~~~---------~l~e--------------------~~~~  113 (277)
T d1phka_          68 GHPNIIQLKDTYE-----TNTFFFLVFDLMKKGELFDYLTEKV---------TLSE--------------------KETR  113 (277)
T ss_dssp             TCTTBCCEEEEEE-----CSSEEEEEEECCTTCBHHHHHHHHS---------SCCH--------------------HHHH
T ss_pred             CCCCeEEEEeecc-----cCcceEEEEEcCCCchHHHHHHhcC---------CCCH--------------------HHHH
Confidence            5999999999999     8899999999999999999998754         4565                    5688


Q ss_pred             HHHHHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC--------CCccCccccc-----CcCCC
Q 005985          234 LLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG--------PNNSSPDSNM-----DRRQM  300 (666)
Q Consensus       234 ~i~~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~--------~~Y~APEvl~-----~~~~y  300 (666)
                      .++.||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+....        +.|+|||.+.     ....|
T Consensus       114 ~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~-~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~  192 (277)
T d1phka_         114 KIMRALLEVICALHKLNIVHRDLKPENILLDD-DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGY  192 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECT-TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCB
T ss_pred             HHHHHHHHHHHHHHHcCCcccccccceEEEcC-CCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCC
Confidence            99999999999999999999999999999998 9999999999998765432        6799999765     33457


Q ss_pred             CchhHHHHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhh
Q 005985          301 MIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLL  380 (666)
Q Consensus       301 s~ksDIWSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL  380 (666)
                      +.++||||+||++|+|++|++||.+            .+.....   ..+......   ...+..+.+|+++++||.+||
T Consensus       193 ~~~~DiwslGvilyeml~g~~Pf~~------------~~~~~~~---~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L  254 (277)
T d1phka_         193 GKEVDMWSTGVIMYTLLAGSPPFWH------------RKQMLML---RMIMSGNYQ---FGSPEWDDYSDTVKDLVSRFL  254 (277)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCC------------SSHHHHH---HHHHHTCCC---CCTTTGGGSCHHHHHHHHHHC
T ss_pred             CchheEcccchhhhhhccCCCCCCC------------CCHHHHH---HHHHhCCCC---CCCcccccCCHHHHHHHHHHc
Confidence            8999999999999999999999962            2222222   222222211   122345678999999999999


Q ss_pred             hcCcCCCCCHHHHHcCCCCCCC
Q 005985          381 ATKPSKRISCLDALRHPFLCGP  402 (666)
Q Consensus       381 ~~DP~~RpTa~elL~HPwf~~~  402 (666)
                      ++||++|||++|+|+||||++.
T Consensus       255 ~~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         255 VVQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             CSSGGGSCCHHHHTTSGGGCTT
T ss_pred             cCChhHCcCHHHHHcCHHHHHh
Confidence            9999999999999999999863


No 18 
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.6e-52  Score=440.75  Aligned_cols=247  Identities=19%  Similarity=0.196  Sum_probs=205.2

Q ss_pred             CeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-----hhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        87 ~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      .|+++++||+|+||    +||+|+++.     +++.||||++...     ...+.+.+|+.+|++|+      |||||++
T Consensus        16 ~y~~l~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~------HpnIv~~   80 (309)
T d1u5ra_          16 LFSDLREIGHGSFG----AVYFARDVR-----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR------HPNTIQY   80 (309)
T ss_dssp             HEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCC------CTTBCCE
T ss_pred             hcEeeEEEecCCCe----EEEEEEECC-----CCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCC------CCCEeeE
Confidence            49999999999999    999999998     8999999998742     22345789999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.     +.+.+|||||||.+|+|..++...+         .++|                    ..++.+++||+.
T Consensus        81 ~~~~~-----~~~~~~iv~E~~~~g~l~~~~~~~~---------~l~e--------------------~~~~~i~~qi~~  126 (309)
T d1u5ra_          81 RGCYL-----REHTAWLVMEYCLGSASDLLEVHKK---------PLQE--------------------VEIAAVTHGALQ  126 (309)
T ss_dssp             EEEEE-----ETTEEEEEEECCSEEHHHHHHHHTS---------CCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEEE-----ECCEEEEEEEecCCCchHHHHHhCC---------CCCH--------------------HHHHHHHHHHHH
Confidence            99998     6789999999999999987776643         4555                    568899999999


Q ss_pred             HHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----CCCccCcccccC--cCCCCchhHHHHHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----GPNNSSPDSNMD--RRQMMIAFDMRCVGFMMA  314 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----~~~Y~APEvl~~--~~~ys~ksDIWSLGviLy  314 (666)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|......     ++.|+|||++.+  ...|+.++|||||||++|
T Consensus       127 aL~yLH~~~iiHrDiKp~NILl~~-~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvily  205 (309)
T d1u5ra_         127 GLAYLHSHNMIHRDVKAGNILLSE-PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI  205 (309)
T ss_dssp             HHHHHHHTTCBCCCCSGGGEEEET-TTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEeccCCCcceEEECC-CCCEEEeecccccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHH
Confidence            999999999999999999999998 899999999999866543     378999998764  346899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005985          315 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  394 (666)
Q Consensus       315 eLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL  394 (666)
                      ||++|.+||.+.            ...   +.+..+.....+.     .....+|+++++||.+||++||++|||++|+|
T Consensus       206 el~~g~~Pf~~~------------~~~---~~~~~i~~~~~~~-----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell  265 (309)
T d1u5ra_         206 ELAERKPPLFNM------------NAM---SALYHIAQNESPA-----LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL  265 (309)
T ss_dssp             HHHHSSCTTTTS------------CHH---HHHHHHHHSCCCC-----CSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             HHHHCCCCCCCC------------CHH---HHHHHHHhCCCCC-----CCCCCCCHHHHHHHHHHCcCChhHCcCHHHHH
Confidence            999999998522            111   1222222222221     11245789999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 005985          395 RHPFLCGPR  403 (666)
Q Consensus       395 ~HPwf~~~~  403 (666)
                      +||||....
T Consensus       266 ~Hp~~~~~~  274 (309)
T d1u5ra_         266 KHRFVLRER  274 (309)
T ss_dssp             TCHHHHSCC
T ss_pred             hCHHhcCCC
Confidence            999997643


No 19 
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=4.8e-52  Score=444.50  Aligned_cols=248  Identities=17%  Similarity=0.216  Sum_probs=211.1

Q ss_pred             ccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-----hHHHHHHHHHHHHHhhhccCCCCCcc
Q 005985           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-----AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (666)
Q Consensus        84 ~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-----~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (666)
                      .+++|++++.||+|+||    +||+|+++.     +++.||||++.+..     ..+.+.+|+.+|+.++      ||||
T Consensus        39 ~ld~y~i~~~lG~G~fg----~Vy~a~~~~-----~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~------hpnI  103 (350)
T d1rdqe_          39 QLDQFDRIKTLGTGSFG----RVMLVKHKE-----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN------FPFL  103 (350)
T ss_dssp             CGGGEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC------CTTB
T ss_pred             CccCeEEEEEeecCcCc----EEEEEEECC-----CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcC------CCcE
Confidence            46899999999999999    999999998     89999999997432     2345689999999997      9999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      |++++++.     +...+++||||+.+|+|.+++.+.+         .++|                    ..++.|+.|
T Consensus       104 v~~~~~~~-----~~~~~~~v~e~~~~g~l~~~l~~~~---------~l~e--------------------~~~~~i~~q  149 (350)
T d1rdqe_         104 VKLEFSFK-----DNSNLYMVMEYVAGGEMFSHLRRIG---------RFSE--------------------PHARFYAAQ  149 (350)
T ss_dssp             CCEEEEEE-----CSSEEEEEEECCTTCBHHHHHHHHC---------CCCH--------------------HHHHHHHHH
T ss_pred             eecccccc-----cccccccccccccccchhhhHhhcC---------CCCH--------------------HHHHHHHHH
Confidence            99999999     7889999999999999999998754         4555                    568899999


Q ss_pred             HHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC------CCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          239 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       239 Il~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~------~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      |+.||+|||++|||||||||+|||++. ++++||+|||+|+.....      .+.|+|||++.+ ..|+.++|||||||+
T Consensus       150 i~~aL~yLH~~~iiHRDIKP~NILl~~-~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~-~~~~~~~DiwSlGvi  227 (350)
T d1rdqe_         150 IVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILS-KGYNKAVDWWALGVL  227 (350)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECT-TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTT-CCBCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEecCcCCHHHcccCC-CCCEEeeeceeeeecccccccccCccccCCHHHHcC-CCCCccccccchhHH
Confidence            999999999999999999999999998 899999999999877653      378999997665 558999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC----
Q 005985          313 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI----  388 (666)
Q Consensus       313 LyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp----  388 (666)
                      +|||++|++||.            +.....   .+..+.....       .....+++++.+||.+||++||.+|+    
T Consensus       228 lyemltG~~Pf~------------~~~~~~---~~~~i~~~~~-------~~p~~~s~~~~~li~~~L~~dP~kR~~~~r  285 (350)
T d1rdqe_         228 IYEMAAGYPPFF------------ADQPIQ---IYEKIVSGKV-------RFPSHFSSDLKDLLRNLLQVDLTKRFGNLK  285 (350)
T ss_dssp             HHHHHHSSCSSC------------CSSHHH---HHHHHHHCCC-------CCCTTCCHHHHHHHHHHSCSCTTTCTTSST
T ss_pred             HHHHHhCCCCCC------------CcCHHH---HHHHHhcCCC-------CCCccCCHHHHHHHHHHhhhCHHhcccccc
Confidence            999999999995            222222   2222332221       22356899999999999999999995    


Q ss_pred             -CHHHHHcCCCCCCCCC
Q 005985          389 -SCLDALRHPFLCGPRW  404 (666)
Q Consensus       389 -Ta~elL~HPwf~~~~~  404 (666)
                       |++|+|+||||++.+|
T Consensus       286 ~t~~ell~Hp~f~~~~~  302 (350)
T d1rdqe_         286 NGVNDIKNHKWFATTDW  302 (350)
T ss_dssp             TTTHHHHTSGGGTTCCH
T ss_pred             ccHHHHHcCccccCCCH
Confidence             9999999999998774


No 20 
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-51  Score=430.55  Aligned_cols=272  Identities=24%  Similarity=0.301  Sum_probs=209.6

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh----hHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      +++|++++.||+|+||    +||+|+++.     +++.||||+++...    ..+.+.+|+++|++++      |||||+
T Consensus         1 ~d~Y~~~~~lG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~------Hp~Iv~   65 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYG----VVYKARNKL-----TGEVVALKKIRLDTETEGVPSTAIREISLLKELN------HPNIVK   65 (298)
T ss_dssp             CTTEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEC-------CCHHHHHHHHHHTTCC------CTTBCC
T ss_pred             CCCCEeccEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCC------CCcEEE
Confidence            5899999999999999    999999998     89999999997432    2356789999999997      999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      +++++.     +.+.+|+|||||.+ ++.+++....       ...++|                    ..++.++.||+
T Consensus        66 ~~~~~~-----~~~~~~iv~e~~~~-~~~~~~~~~~-------~~~l~e--------------------~~~~~~~~qil  112 (298)
T d1gz8a_          66 LLDVIH-----TENKLYLVFEFLHQ-DLKKFMDASA-------LTGIPL--------------------PLIKSYLFQLL  112 (298)
T ss_dssp             EEEEEE-----ETTEEEEEEECCSE-EHHHHHHHTT-------TTCCCH--------------------HHHHHHHHHHH
T ss_pred             eccccc-----cccceeEEEeecCC-chhhhhhhhc-------ccCCCH--------------------HHHHHHHHHHH
Confidence            999999     77899999999987 6666665431       124555                    66899999999


Q ss_pred             HHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHHHHH
Q 005985          241 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       241 ~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      .||+|||++|||||||||+|||++. ++.+||+|||+|+.....         .+.|+|||++.....++.++|||||||
T Consensus       113 ~~L~yLH~~~IiHrDiKpeNIl~~~-~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGv  191 (298)
T d1gz8a_         113 QGLAFCHSHRVLHRDLKPQNLLINT-EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGC  191 (298)
T ss_dssp             HHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred             HHHHHhhcCCEEccccCchheeecc-cCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccch
Confidence            9999999999999999999999998 899999999999765432         378999998877777899999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhccccCCCchhHHHHHHHH---hhcCCCCC-CCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          312 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQV---LNRNSSSG-NTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       312 iLyeLltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~---~~~~~~~~-~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      ++|+|++|++||.+.   .....++...+.+...........   ........ .......+.+|+++++||.+||++||
T Consensus       192 ily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP  271 (298)
T d1gz8a_         192 IFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDP  271 (298)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSST
T ss_pred             hhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCCh
Confidence            999999999999632   112222222222221111000000   00000000 00012345678999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCCCC
Q 005985          385 SKRISCLDALRHPFLCGPRWR  405 (666)
Q Consensus       385 ~~RpTa~elL~HPwf~~~~~~  405 (666)
                      ++|||++|+|+||||++...+
T Consensus       272 ~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         272 NKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             TTSCCHHHHHTSGGGTTCCCC
T ss_pred             hHCcCHHHHhCCHhhccCCCC
Confidence            999999999999999988754


No 21 
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.4e-52  Score=438.99  Aligned_cols=251  Identities=16%  Similarity=0.253  Sum_probs=208.7

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhh-HHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQA-QRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~-~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      .++|++++.||+|+||    +||+|+++.     +++.||||+++.... ...+.+|+++|+.++      |||||++++
T Consensus         4 ~~rY~i~~~lG~G~fg----~Vy~~~~~~-----~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~------HpnIv~~~~   68 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFG----IVHRCVETS-----SKKTYMAKFVKVKGTDQVLVKKEISILNIAR------HRNILHLHE   68 (321)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECCCTHHHHHHHHHHHHHHHSC------CTTBCCEEE
T ss_pred             ccceEEEEEEecCCCe----EEEEEEECC-----CCcEEEEEEEcCCcccHHHHHHHHHHHHhCC------CCCCCeEEE
Confidence            4889999999999999    999999998     899999999986443 345689999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      +|+     +.+.+|||||||++|+|.++|...+        ..++|                    ..++.|+.||+.||
T Consensus        69 ~~~-----~~~~~~lvmE~~~gg~L~~~i~~~~--------~~l~e--------------------~~~~~i~~qi~~al  115 (321)
T d1tkia_          69 SFE-----SMEELVMIFEFISGLDIFERINTSA--------FELNE--------------------REIVSYVHQVCEAL  115 (321)
T ss_dssp             EEE-----ETTEEEEEECCCCCCBHHHHHTSSS--------CCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEE-----ECCEEEEEEecCCCCcHHHHHHhcC--------CCCCH--------------------HHHHHHHHHHHHHH
Confidence            999     7789999999999999999997642        24565                    56899999999999


Q ss_pred             HHHHhcCccccccccceEEEccC-CCceEEeeeccccccCCCC--------CCccCcccccCcCCCCchhHHHHHHHHHH
Q 005985          244 NYLHSHGLAHTELRLENVHISPV-DRHIKVRILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMMA  314 (666)
Q Consensus       244 ~yLHs~gIvHRDLKPeNILi~~~-~g~vKL~DFGlA~~~~~~~--------~~Y~APEvl~~~~~ys~ksDIWSLGviLy  314 (666)
                      +|||++||+||||||+|||++.+ ...+||+|||+++......        +.|+|||++. ...|+.++|||||||++|
T Consensus       116 ~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~-~~~~~~~~DiWSlGvily  194 (321)
T d1tkia_         116 QFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQ-HDVVSTATDMWSLGTLVY  194 (321)
T ss_dssp             HHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHT-TCEECHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhcc-CCCCCchhhcccHHHHHH
Confidence            99999999999999999999852 4589999999998775543        7899999654 456899999999999999


Q ss_pred             HHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005985          315 KMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  394 (666)
Q Consensus       315 eLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL  394 (666)
                      +|++|.+||..            ....   +.+..+......   ...+.++.+|+++++||.+||++||++|||++|+|
T Consensus       195 ~ll~G~~Pf~~------------~~~~---~~~~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil  256 (321)
T d1tkia_         195 VLLSGINPFLA------------ETNQ---QIIENIMNAEYT---FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEAL  256 (321)
T ss_dssp             HHHHSSCTTCC------------SSHH---HHHHHHHHTCCC---CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred             HHHhCCCCCCC------------CCHH---HHHHHHHhCCCC---CChhhccCCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            99999999952            2222   222223222211   11133456899999999999999999999999999


Q ss_pred             cCCCCCCC
Q 005985          395 RHPFLCGP  402 (666)
Q Consensus       395 ~HPwf~~~  402 (666)
                      +||||++.
T Consensus       257 ~hp~~~~~  264 (321)
T d1tkia_         257 QHPWLKQK  264 (321)
T ss_dssp             HSHHHHSC
T ss_pred             cCHhhccC
Confidence            99999763


No 22 
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.4e-51  Score=432.63  Aligned_cols=247  Identities=20%  Similarity=0.287  Sum_probs=206.1

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-----hhHHHHHHHHHHHH-HhhhccCCCCCcc
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLK-KLVRRRLMYHSYS  158 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-----~~~~~~~rEi~iL~-~L~~~~~~~HpnI  158 (666)
                      +++|++++.||+|+||    +||+|+++.     +++.||||++++.     ...+...+|+.++. .++      ||||
T Consensus         1 iddy~i~~~iG~G~fg----~Vy~~~~~~-----t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~------hp~I   65 (320)
T d1xjda_           1 IEDFILHKMLGKGSFG----KVFLAEFKK-----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE------HPFL   65 (320)
T ss_dssp             CTTEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTT------CTTB
T ss_pred             CCCeEEeeEEecCCCc----EEEEEEECC-----CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCC------CCcE
Confidence            5789999999999999    999999998     8999999999743     22345577877776 465      9999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      |++++++.     +++.+|||||||++|+|.+++...+         .++|                    ..++.++.|
T Consensus        66 v~~~~~~~-----~~~~~yivmEy~~~g~L~~~i~~~~---------~~~e--------------------~~~~~~~~q  111 (320)
T d1xjda_          66 THMFCTFQ-----TKENLFFVMEYLNGGDLMYHIQSCH---------KFDL--------------------SRATFYAAE  111 (320)
T ss_dssp             CCEEEEEE-----CSSEEEEEEECCTTCBHHHHHHHHS---------SCCH--------------------HHHHHHHHH
T ss_pred             EEEEEEEc-----cCCceeEEEeecCCCcHHHHhhccC---------CCCH--------------------HHHHHHHHH
Confidence            99999999     7899999999999999999998754         4555                    558899999


Q ss_pred             HHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHHH
Q 005985          239 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       239 Il~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      |+.||+|||++||+||||||+|||++. ++.+||+|||+|+.....         .+.|+|||++.+ ..|+.++|||||
T Consensus       112 i~~al~ylH~~~iiHrDikp~NiL~~~-~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSl  189 (320)
T d1xjda_         112 IILGLQFLHSKGIVYRDLKLDNILLDK-DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG-QKYNHSVDWWSF  189 (320)
T ss_dssp             HHHHHHHHHHTTCBCCCCCGGGEEECT-TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT-CCBCTHHHHHHH
T ss_pred             HHHHHHHHHhCCeeeccCcccceeecC-CCceeccccchhhhcccccccccccCCCCCcCCHHHHcC-CCCCchhhhhhh
Confidence            999999999999999999999999998 899999999999865432         267999997655 458999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC
Q 005985          310 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  389 (666)
Q Consensus       310 GviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT  389 (666)
                      ||++|+|++|++||.            |.....+...   +.....       .....+|+++++||.+||++||++|||
T Consensus       190 GvilyemltG~~PF~------------~~~~~~~~~~---i~~~~~-------~~p~~~s~~~~dli~~~L~~dP~~R~s  247 (320)
T d1xjda_         190 GVLLYEMLIGQSPFH------------GQDEEELFHS---IRMDNP-------FYPRWLEKEAKDLLVKLFVREPEKRLG  247 (320)
T ss_dssp             HHHHHHHHHSSCSSC------------CSSHHHHHHH---HHHCCC-------CCCTTSCHHHHHHHHHHSCSSGGGSBT
T ss_pred             hHHHHHHHhCCCCCC------------CCCHHHHHHH---HHcCCC-------CCCccCCHHHHHHHHHhcccCCCCCcC
Confidence            999999999999995            3333332222   222211       122457899999999999999999999


Q ss_pred             HH-HHHcCCCCCCCCC
Q 005985          390 CL-DALRHPFLCGPRW  404 (666)
Q Consensus       390 a~-elL~HPwf~~~~~  404 (666)
                      +. |+++||||++..|
T Consensus       248 ~~~~l~~hpff~~~~~  263 (320)
T d1xjda_         248 VRGDIRQHPLFREINW  263 (320)
T ss_dssp             TBSCGGGSGGGTTCCH
T ss_pred             HHHHHHhCchhccCCH
Confidence            95 8999999998763


No 23 
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-51  Score=437.35  Aligned_cols=258  Identities=19%  Similarity=0.235  Sum_probs=202.8

Q ss_pred             ccCCeEEEe-EecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEE
Q 005985           84 NMGDFKILD-RVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (666)
Q Consensus        84 ~~~~Y~i~~-~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~  162 (666)
                      .+++|++++ .||+|+||    +||+|+++.     +++.||||+++..   ....+|+.++.++.     +|||||+++
T Consensus         9 i~~~y~i~~~~lG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~---~~~~~E~~~~~~~~-----~hpnIv~l~   71 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGING----KVLQIFNKR-----TQEKFALKMLQDC---PKARREVELHWRAS-----QCPHIVRIV   71 (335)
T ss_dssp             GGGTEEEEEEEEEECSSC----EEEEEEETT-----TCCEEEEEEEECS---HHHHHHHHHHHHHT-----TSTTBCCEE
T ss_pred             cccCEEEeeEEeeeccCe----EEEEEEECC-----CCCEEEEEEECCc---HHHHHHHHHHHHhc-----CCCCCCeEE
Confidence            368999986 59999999    999999998     8999999999643   45678999987764     499999999


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 005985          163 GYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  242 (666)
Q Consensus       163 ~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~a  242 (666)
                      ++|++. ...+..+|||||||+||+|.++|.+++       ...|+|                    .+++.|++||+.|
T Consensus        72 ~~~~~~-~~~~~~~~ivmEy~~gg~L~~~i~~~~-------~~~l~e--------------------~~~~~i~~qi~~a  123 (335)
T d2ozaa1          72 DVYENL-YAGRKCLLIVMECLDGGELFSRIQDRG-------DQAFTE--------------------REASEIMKSIGEA  123 (335)
T ss_dssp             EEEEEE-ETTEEEEEEEEECCCSEEHHHHHHSCS-------CCCEEH--------------------HHHHHHHHHHHHH
T ss_pred             EEEeec-ccCCCEEEEEEECCCCCcHHHHHHhcC-------CCCcCH--------------------HHHHHHHHHHHHH
Confidence            999731 113578999999999999999998743       123555                    6689999999999


Q ss_pred             HHHHHhcCccccccccceEEEccC--CCceEEeeeccccccCCC--------CCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          243 VNYLHSHGLAHTELRLENVHISPV--DRHIKVRILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       243 L~yLHs~gIvHRDLKPeNILi~~~--~g~vKL~DFGlA~~~~~~--------~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      |+|||++||+||||||+|||++..  ++.+||+|||+|+.....        .+.|+|||++. ...|+.++|||||||+
T Consensus       124 l~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~y~~~~DiwSlGvi  202 (335)
T d2ozaa1         124 IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG-PEKYDKSCDMWSLGVI  202 (335)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCC-GGGGSHHHHHHHHHHH
T ss_pred             HHHHHHcCCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHc-CCCCCHHHHHHhhchh
Confidence            999999999999999999999852  467999999999865443        38899999654 4569999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCc--ccccCCcHHHHHHHHHhhhcCcCCCCCH
Q 005985          313 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGF--QILDRNWGAGWNLLSLLLATKPSKRISC  390 (666)
Q Consensus       313 LyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~s~~l~dLL~~mL~~DP~~RpTa  390 (666)
                      +|+|+||++||.+....            .....+...    .......+  +....+|+++++||.+||++||++|||+
T Consensus       203 ly~lltg~~Pf~~~~~~------------~~~~~~~~~----i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~  266 (335)
T d2ozaa1         203 MYILLCGYPPFYSNHGL------------AISPGMKTR----IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  266 (335)
T ss_dssp             HHHHTTSSCSCEETTCC--------------------C----CCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             HHHHhhCCCCCCCCCHH------------HHHHHHHHH----HhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCH
Confidence            99999999999632110            000100000    00011111  2234678999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 005985          391 LDALRHPFLCGPR  403 (666)
Q Consensus       391 ~elL~HPwf~~~~  403 (666)
                      .|+|+||||.+..
T Consensus       267 ~eil~hp~~~~~~  279 (335)
T d2ozaa1         267 TEFMNHPWIMQST  279 (335)
T ss_dssp             HHHHHSHHHHTTT
T ss_pred             HHHHcCHHhhCCC
Confidence            9999999997644


No 24 
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.2e-51  Score=424.37  Aligned_cols=243  Identities=19%  Similarity=0.207  Sum_probs=204.4

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh--------hHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------AQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~--------~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      ++|++.+.||+|+||    +||+|+++.     +++.||||++.+..        ...++.+|+.+|+++++    .|||
T Consensus         4 ~~Y~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~----~h~n   70 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFG----SVYSGIRVS-----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS----GFSG   70 (273)
T ss_dssp             TTEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS----SSCS
T ss_pred             CeEEEeEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhcc----CCCC
Confidence            689999999999999    999999998     89999999997432        11234789999999962    3899


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCC-CCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGS-FSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  236 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~-GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~  236 (666)
                      ||++++++.     +.+.+|+||||+.+ ++|.+++...+         .++|                    ..++.++
T Consensus        71 Iv~~~~~~~-----~~~~~~lv~e~~~~~~~l~~~~~~~~---------~l~e--------------------~~~~~~~  116 (273)
T d1xwsa_          71 VIRLLDWFE-----RPDSFVLILERPEPVQDLFDFITERG---------ALQE--------------------ELARSFF  116 (273)
T ss_dssp             BCCEEEEEE-----CSSEEEEEEECCSSEEEHHHHHHHHC---------SCCH--------------------HHHHHHH
T ss_pred             ccEEEEEEe-----eCCeEEEEEEeccCcchHHHHHhccC---------CCCH--------------------HHHHHHH
Confidence            999999999     78899999999976 68889887753         4565                    5588999


Q ss_pred             HHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-------CCCccCcccccCcCCCCchhHHHHH
Q 005985          237 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-------GPNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       237 ~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-------~~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      .||+.||+|||++||+||||||+|||++.+++.+||+|||+|+.....       ++.|+|||++.+...++.++|||||
T Consensus       117 ~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSl  196 (273)
T d1xwsa_         117 WQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSL  196 (273)
T ss_dssp             HHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccc
Confidence            999999999999999999999999999974689999999999865432       3689999988777767889999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC
Q 005985          310 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  389 (666)
Q Consensus       310 GviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT  389 (666)
                      ||++|||++|++||......                     ....       ....+.+|+++++||.+||++||++|||
T Consensus       197 Gvilyell~g~~Pf~~~~~i---------------------~~~~-------~~~~~~~s~~~~~li~~~L~~dp~~R~s  248 (273)
T d1xwsa_         197 GILLYDMVCGDIPFEHDEEI---------------------IRGQ-------VFFRQRVSSECQHLIRWCLALRPSDRPT  248 (273)
T ss_dssp             HHHHHHHHHSSCSCCSHHHH---------------------HHCC-------CCCSSCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             eeeehhHhhCCCCCCCchHH---------------------hhcc-------cCCCCCCCHHHHHHHHHHccCCHhHCcC
Confidence            99999999999999632211                     1111       1123467899999999999999999999


Q ss_pred             HHHHHcCCCCCCCC
Q 005985          390 CLDALRHPFLCGPR  403 (666)
Q Consensus       390 a~elL~HPwf~~~~  403 (666)
                      ++|+|+||||++..
T Consensus       249 ~~eil~hp~~~~~~  262 (273)
T d1xwsa_         249 FEEIQNHPWMQDVL  262 (273)
T ss_dssp             HHHHHTSGGGSSCC
T ss_pred             HHHHhcCHhhCCCC
Confidence            99999999998754


No 25 
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=9.9e-51  Score=421.37  Aligned_cols=266  Identities=21%  Similarity=0.249  Sum_probs=207.6

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh----hHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      +++|+++++||+|+||    +||+|+++      +++.||||++....    ..+.+.+|+.+|++++      |||||+
T Consensus         1 ~~~Y~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------hpnIv~   64 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYG----VVYKAQNN------YGETFALKKIRLEKEDEGIPSTTIREISILKELK------HSNIVK   64 (286)
T ss_dssp             CCSEEEEEEEEEETTE----EEEEEEET------TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCC------CTTBCC
T ss_pred             CCCceeccEEecCCCc----EEEEEEeC------CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCC------CCcEEe
Confidence            5799999999999999    99999986      58999999997432    2356789999999997      999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      +++++.     +.+..|++|||+.++.+..+....+         .+++                    ..++.+++||+
T Consensus        65 ~~~~~~-----~~~~~~i~~e~~~~~~~~~~~~~~~---------~l~~--------------------~~~~~i~~qi~  110 (286)
T d1ob3a_          65 LYDVIH-----TKKRLVLVFEHLDQDLKKLLDVCEG---------GLES--------------------VTAKSFLLQLL  110 (286)
T ss_dssp             EEEEEE-----CSSCEEEEEECCSEEHHHHHHTSTT---------CCCH--------------------HHHHHHHHHHH
T ss_pred             eeeecc-----cCCceeEEEEeehhhhHHHHHhhcC---------Ccch--------------------hhhHHHHHHHH
Confidence            999999     7889999999999966666655433         4555                    56899999999


Q ss_pred             HHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC---------CCCccCcccccCcCCCCchhHHHHHHH
Q 005985          241 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED---------GPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       241 ~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~---------~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      .||+|||++|||||||||+|||++. ++.+||+|||+|......         .+.|+|||++.+...++.++|||||||
T Consensus       111 ~~L~~LH~~~IvHrDiKp~NIll~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv  189 (286)
T d1ob3a_         111 NGIAYCHDRRVLHRDLKPQNLLINR-EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGC  189 (286)
T ss_dssp             HHHHHHHHTTCCCSCCCGGGEEECT-TSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHH
T ss_pred             HHHHHhccCcEEecCCCCceeeEcC-CCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCc
Confidence            9999999999999999999999998 899999999999765532         278999998888888899999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhccccCCCchhHHHHHHHHhh----cCCCCCCCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          312 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREFLLQVLN----RNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       312 iLyeLltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      ++|||++|++||.+.   +...+++...|.+.............    .............+.++++++|||++||++||
T Consensus       190 ~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP  269 (286)
T d1ob3a_         190 IFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDP  269 (286)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSST
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCCh
Confidence            999999999999632   22222222223222110000000000    00000111113345688999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCC
Q 005985          385 SKRISCLDALRHPFLCG  401 (666)
Q Consensus       385 ~~RpTa~elL~HPwf~~  401 (666)
                      ++|||++|+|+||||++
T Consensus       270 ~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         270 NQRITAKQALEHAYFKE  286 (286)
T ss_dssp             TTSCCHHHHHTSGGGGC
T ss_pred             hHCcCHHHHhcCcccCc
Confidence            99999999999999974


No 26 
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}
Probab=100.00  E-value=1.8e-50  Score=427.48  Aligned_cols=268  Identities=21%  Similarity=0.264  Sum_probs=209.7

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~  164 (666)
                      .++|+++++||+|+||    +||+|+++.     +++.||||+++... .+++.+|+++|+.++     +||||++++++
T Consensus        34 ~d~y~i~~~LG~G~fg----~V~~a~~~~-----~~~~vAiK~i~~~~-~~~~~~Ei~il~~l~-----~hpnIv~~~~~   98 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYS----EVFEAINIT-----NNEKVVVKILKPVK-KKKIKREIKILENLR-----GGPNIITLADI   98 (328)
T ss_dssp             GGGEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSSC-HHHHHHHHHHHHHHT-----TSTTBCCEEEE
T ss_pred             CcCeEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEECHHH-HHHHHHHHHHHHhcc-----CCCCCcEEEEE
Confidence            4789999999999999    999999998     89999999997643 456789999999996     59999999999


Q ss_pred             EeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 005985          165 VSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  244 (666)
Q Consensus       165 ~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  244 (666)
                      |...   ....+|+|||||.+|+|.++.+            .++|                    ..++.+++||+.||+
T Consensus        99 ~~~~---~~~~~~~v~e~~~~~~L~~~~~------------~l~e--------------------~~i~~i~~qil~aL~  143 (328)
T d3bqca1          99 VKDP---VSRTPALVFEHVNNTDFKQLYQ------------TLTD--------------------YDIRFYMYEILKALD  143 (328)
T ss_dssp             EECT---TTCSEEEEEECCCSCBGGGTTT------------SCCH--------------------HHHHHHHHHHHHHHH
T ss_pred             EEec---CCCceeEEEeecCCCcHHHHhc------------CCCH--------------------HHHHHHHHHHHHHHH
Confidence            9843   5678999999999999876532            3555                    568899999999999


Q ss_pred             HHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC--------CCccCcccccCcCCCCchhHHHHHHHHHHHH
Q 005985          245 YLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG--------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAKM  316 (666)
Q Consensus       245 yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~--------~~Y~APEvl~~~~~ys~ksDIWSLGviLyeL  316 (666)
                      |||++||+||||||+|||++.+++.+||+|||+|.......        +.|+|||++.+...|+.++||||+||++|+|
T Consensus       144 ~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~  223 (328)
T d3bqca1         144 YCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASM  223 (328)
T ss_dssp             HHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHH
T ss_pred             HHhhcccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHh
Confidence            99999999999999999999756679999999998765432        6799999888888899999999999999999


Q ss_pred             HhCCCCChhh----hhhhhhccccCCCchhHHHHHHHHhh-----------cCCCCCC---CCcccccCCcHHHHHHHHH
Q 005985          317 VLRELMDPLI----FTKFKSFLTKGIDPSCLREFLLQVLN-----------RNSSSGN---TGFQILDRNWGAGWNLLSL  378 (666)
Q Consensus       317 ltG~~PF~~~----~~~~~~~~~~g~~~~~l~~~~~~~~~-----------~~~~~~~---~~~~~~~~~s~~l~dLL~~  378 (666)
                      ++|+.||...    .+...+....|.+.  ...+....-.           .......   ........++++++|||++
T Consensus       224 ~~g~~pf~~~~~~~~~~~~i~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~  301 (328)
T d3bqca1         224 IFRKEPFFHGHDNYDQLVRIAKVLGTED--LYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDK  301 (328)
T ss_dssp             HHTCSSSSCCSSHHHHHHHHHHHHCHHH--HHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHH
T ss_pred             ccCCCCCCCCchhHHHHHHHHHHHCCch--hhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHH
Confidence            9999998621    12222222222111  1111110000           0000000   0012234578999999999


Q ss_pred             hhhcCcCCCCCHHHHHcCCCCCCCCC
Q 005985          379 LLATKPSKRISCLDALRHPFLCGPRW  404 (666)
Q Consensus       379 mL~~DP~~RpTa~elL~HPwf~~~~~  404 (666)
                      ||++||++||||+|+|+||||++..|
T Consensus       302 mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         302 LLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             HSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             HccCChhHCcCHHHHhcCcccCCCCC
Confidence            99999999999999999999998765


No 27 
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.7e-50  Score=421.44  Aligned_cols=278  Identities=20%  Similarity=0.197  Sum_probs=205.1

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh----hHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      .++|+++++||+|+||    +||+|++...    +++.||||+++...    ......+|+.+|+.|+   ...||||++
T Consensus         6 ~~~Y~i~~~LG~G~fg----~V~~a~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~---~~~HpnIv~   74 (305)
T d1blxa_           6 DQQYECVAEIGEGAYG----KVFKARDLKN----GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE---TFEHPNVVR   74 (305)
T ss_dssp             GGTEEEEEEEEEETTE----EEEEEEETTT----TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHH---HTCCTTBCC
T ss_pred             cCCEEEEEEEecccCe----EEEEEEEECC----CCEEEEEEEEehhhccchHHHHHHHHHHHHHHHh---hcCCCCcce
Confidence            3789999999999999    9999999762    36789999987422    2234678999998884   224999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      ++++|..........+|++|||+++|++........        ..+++                    ..++.+++||+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~  126 (305)
T d1blxa_          75 LFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE--------PGVPT--------------------ETIKDMMFQLL  126 (305)
T ss_dssp             EEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCT--------TCSCH--------------------HHHHHHHHHHH
T ss_pred             eeeeecccccccCceEEEEEEeccCCchhhhhhccC--------CCCCH--------------------HHHHHHHHHHH
Confidence            999997544446678999999999966654444321        23444                    66889999999


Q ss_pred             HHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC--------CCCCccCcccccCcCCCCchhHHHHHHHH
Q 005985          241 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       241 ~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~--------~~~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      .||+|||++||+||||||+|||++. ++.+||+|||+++....        +++.|+|||++.+ ..|+.++||||+||+
T Consensus       127 ~aL~yLH~~~ivHrDiKp~NILi~~-~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~-~~y~~~~DiwSlG~i  204 (305)
T d1blxa_         127 RGLDFLHSHRVVHRDLKPQNILVTS-SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ-SSYATPVDLWSVGCI  204 (305)
T ss_dssp             HHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTT-CCCCTHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecCCCccEEEEcC-CCCeeecchhhhhhhcccccCCCcccChhhcCcchhcC-CCCChhehhhchHHH
Confidence            9999999999999999999999998 89999999999875432        2379999997655 569999999999999


Q ss_pred             HHHHHhCCCCChhh---hhhhhhccccCCCchhHHHH-HH-HHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCC
Q 005985          313 MAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-LL-QVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  387 (666)
Q Consensus       313 LyeLltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~R  387 (666)
                      +|||++|++||...   +....+....|.+....... .. ...................+++++++||.+||++||++|
T Consensus       205 l~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R  284 (305)
T d1blxa_         205 FAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKR  284 (305)
T ss_dssp             HHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTS
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHC
Confidence            99999999999632   11112222222211100000 00 000000000111112345688999999999999999999


Q ss_pred             CCHHHHHcCCCCCCCC
Q 005985          388 ISCLDALRHPFLCGPR  403 (666)
Q Consensus       388 pTa~elL~HPwf~~~~  403 (666)
                      |||+|+|+||||+++.
T Consensus       285 ~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         285 ISAYSALSHPYFQDLE  300 (305)
T ss_dssp             CCHHHHHTSGGGTTCC
T ss_pred             cCHHHHhcChhhcCch
Confidence            9999999999999876


No 28 
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-50  Score=431.79  Aligned_cols=275  Identities=18%  Similarity=0.251  Sum_probs=209.8

Q ss_pred             CeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEEEe
Q 005985           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (666)
Q Consensus        87 ~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~~  166 (666)
                      +|+.++.||+|+||    +||+|+++.     +++.||||++....  ....+|+++|++++      |||||+++++|.
T Consensus        21 ~Y~~~k~LG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~--~~~~~Ei~il~~l~------h~niv~~~~~~~   83 (350)
T d1q5ka_          21 SYTDTKVIGNGSFG----VVYQAKLCD-----SGELVAIKKVLQDK--RFKNRELQIMRKLD------HCNIVRLRYFFY   83 (350)
T ss_dssp             EEEEEEEEEEETTE----EEEEEEETT-----TCCEEEEEEEECCS--SSCCHHHHHHHHCC------CTTBCCEEEEEE
T ss_pred             CcEeeeEEeeCcCe----EEEEEEECC-----CCCEEEEEEECccc--hHHHHHHHHHHhcC------CCCCCcEEEEEE
Confidence            69999999999999    999999998     89999999997532  23458999999998      999999999996


Q ss_pred             ccCC-CCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 005985          167 SHTT-SGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  245 (666)
Q Consensus       167 ~~~~-~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  245 (666)
                      .... .+..++|||||||++ ++.+.+....     .....+++                    ..++.|++||+.||+|
T Consensus        84 ~~~~~~~~~~~~lv~Ey~~~-~~~~~l~~~~-----~~~~~l~~--------------------~~~~~i~~qil~aL~y  137 (350)
T d1q5ka_          84 SSGEKKDEVYLNLVLDYVPE-TVYRVARHYS-----RAKQTLPV--------------------IYVKLYMYQLFRSLAY  137 (350)
T ss_dssp             EC--CCSCCEEEEEEECCSE-EHHHHHHHHH-----HTTCCCCH--------------------HHHHHHHHHHHHHHHH
T ss_pred             ecCccCCceEEEEEEeccCC-ccHHHHHhhh-----hccCCCCH--------------------HHHHHHHHHHHHHHHH
Confidence            4322 245678999999998 4544443210     01123444                    6689999999999999


Q ss_pred             HHhcCccccccccceEEEccCCCceEEeeeccccccCCC--------CCCccCcccccCcCCCCchhHHHHHHHHHHHHH
Q 005985          246 LHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAKMV  317 (666)
Q Consensus       246 LHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~--------~~~Y~APEvl~~~~~ys~ksDIWSLGviLyeLl  317 (666)
                      ||++||+||||||+|||++.++..+||+|||+|..+...        .+.|+|||++.+...|+.++||||+||++|||+
T Consensus       138 LH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~  217 (350)
T d1q5ka_         138 IHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELL  217 (350)
T ss_dssp             HHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehh
Confidence            999999999999999999984568999999999876443        278999998888888999999999999999999


Q ss_pred             hCCCCChh---hhhhhhhccccCCCchhHHHHHHHHhhc-CCCCCC-CC--cccccCCcHHHHHHHHHhhhcCcCCCCCH
Q 005985          318 LRELMDPL---IFTKFKSFLTKGIDPSCLREFLLQVLNR-NSSSGN-TG--FQILDRNWGAGWNLLSLLLATKPSKRISC  390 (666)
Q Consensus       318 tG~~PF~~---~~~~~~~~~~~g~~~~~l~~~~~~~~~~-~~~~~~-~~--~~~~~~~s~~l~dLL~~mL~~DP~~RpTa  390 (666)
                      +|++||..   .+....++...|.+.............. ..+... ..  -...+..++++++||.+||++||++||||
T Consensus       218 ~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta  297 (350)
T d1q5ka_         218 LGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTP  297 (350)
T ss_dssp             HTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCH
Confidence            99999973   3334445555566554332221111111 000000 00  01234678999999999999999999999


Q ss_pred             HHHHcCCCCCCCCC
Q 005985          391 LDALRHPFLCGPRW  404 (666)
Q Consensus       391 ~elL~HPwf~~~~~  404 (666)
                      .|+|+||||++...
T Consensus       298 ~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         298 LEACAHSFFDELRD  311 (350)
T ss_dssp             HHHHTSGGGGGGGC
T ss_pred             HHHhcCHhhccccC
Confidence            99999999988653


No 29 
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-49  Score=413.27  Aligned_cols=258  Identities=22%  Similarity=0.310  Sum_probs=209.4

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      +++|+++++||+|+||    +||+|+++.     +++.||||+++..    .....+.+|+.+|+.++      |||||+
T Consensus         1 ~~ry~~i~~LG~G~fg----~V~~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------h~niv~   65 (292)
T d1unla_           1 MQKYEKLEKIGEGTYG----TVFKAKNRE-----THEIVALKRVRLDDDDEGVPSSALREICLLKELK------HKNIVR   65 (292)
T ss_dssp             CCSEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCC------CTTBCC
T ss_pred             CCCCEeeeEEecCcCe----EEEEEEECC-----CCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcC------cCCEEe
Confidence            5799999999999999    999999998     8999999999643    23456789999999998      999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      +++++.     +....++|||++.+++|..++...+         .+++                    ..++.+++|++
T Consensus        66 ~~~~~~-----~~~~~~iv~~~~~~~~l~~~~~~~~---------~~~~--------------------~~~~~~~~q~~  111 (292)
T d1unla_          66 LHDVLH-----SDKKLTLVFEFCDQDLKKYFDSCNG---------DLDP--------------------EIVKSFLFQLL  111 (292)
T ss_dssp             EEEEEE-----CSSEEEEEEECCSEEHHHHHHHTTT---------CCCH--------------------HHHHHHHHHHH
T ss_pred             eccccc-----cccceeEEeeecccccccccccccc---------ccch--------------------hHHHHHHHHHH
Confidence            999999     7889999999999999988887653         3444                    56899999999


Q ss_pred             HHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC---------CCccCcccccCcCCCCchhHHHHHHH
Q 005985          241 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG---------PNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       241 ~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~---------~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      .||+|||++||+||||||+|||++. ++.+||+|||.|+......         +.|+|||++.....++.++||||+||
T Consensus       112 ~aL~~lH~~~IvHrDiKP~NIli~~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~  190 (292)
T d1unla_         112 KGLGFCHSRNVLHRDLKPQNLLINR-NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGC  190 (292)
T ss_dssp             HHHHHHHHTTEECCCCSGGGEEECT-TCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHH
T ss_pred             HHHHHhhcCCEeeecccCccccccc-CCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccch
Confidence            9999999999999999999999998 8999999999998765432         67889998877777899999999999


Q ss_pred             HHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCC-------------------CCCCCCcccccCCcHHH
Q 005985          312 MMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNS-------------------SSGNTGFQILDRNWGAG  372 (666)
Q Consensus       312 iLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~s~~l  372 (666)
                      ++|||++|..||..           +.+.......+........                   ..........+..++++
T Consensus       191 il~ell~g~~p~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  259 (292)
T d1unla_         191 IFAELANAGRPLFP-----------GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATG  259 (292)
T ss_dssp             HHHHHTTTSCCSCC-----------CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHH
T ss_pred             HHHHHhhCCCCCCC-----------CCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHH
Confidence            99999999988631           1111111111111111110                   01111223445678999


Q ss_pred             HHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005985          373 WNLLSLLLATKPSKRISCLDALRHPFLCGPR  403 (666)
Q Consensus       373 ~dLL~~mL~~DP~~RpTa~elL~HPwf~~~~  403 (666)
                      ++||.+||++||++||||+|+|+||||++..
T Consensus       260 ~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~  290 (292)
T d1unla_         260 RDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHTTSGGGSSCS
T ss_pred             HHHHHHHccCChhHCcCHHHHhcChhhcCCC
Confidence            9999999999999999999999999998754


No 30 
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-49  Score=424.55  Aligned_cols=273  Identities=20%  Similarity=0.285  Sum_probs=208.8

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      -++|++++.||+|+||    +||+|+++.     +++.||||+++..    ...+.+.+|+++|++++      |||||+
T Consensus        17 ~~~Y~~i~~lG~G~fg----~V~~~~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~------hpniv~   81 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYG----AVCSAVDGR-----TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMR------HENVIG   81 (346)
T ss_dssp             BSSEEEEEEC----------CEEEEEETT-----TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCC------BTTBCC
T ss_pred             CCcEEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcC------CCCeeE
Confidence            4799999999999999    999999998     8999999999742    23356789999999998      999999


Q ss_pred             EEEEEeccC-CCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          161 VHGYVSSHT-TSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       161 l~~~~~~~~-~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++|.... ......+|||||||+. +|..+++..          .|++                    ..++.+++||
T Consensus        82 l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~----------~l~~--------------------~~~~~~~~qi  130 (346)
T d1cm8a_          82 LLDVFTPDETLDDFTDFYLVMPFMGT-DLGKLMKHE----------KLGE--------------------DRIQFLVYQM  130 (346)
T ss_dssp             CSEEECSCSSTTTCCCCEEEEECCSE-EHHHHHHHC----------CCCH--------------------HHHHHHHHHH
T ss_pred             EEEEeccCccccccceEEEEEecccc-cHHHHHHhc----------cccH--------------------HHHHHHHHHH
Confidence            999997432 1234578999999965 888887653          4565                    5689999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC------CCCccCcccccCcCCCCchhHHHHHHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  313 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~------~~~Y~APEvl~~~~~ys~ksDIWSLGviL  313 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.....      .+.|+|||++.+...++.++||||+||++
T Consensus       131 ~~aL~~LH~~~IiHrDiKp~NIL~~~-~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil  209 (346)
T d1cm8a_         131 LKGLRYIHAAGIIHRDLKPGNLAVNE-DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIM  209 (346)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccCcchhhccc-ccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHH
Confidence            99999999999999999999999998 999999999999876543      37899999888888889999999999999


Q ss_pred             HHHHhCCCCChhh---hhhhhhccccCCCchhHHHH-----HHHHhhcCCCCCCCC-cccccCCcHHHHHHHHHhhhcCc
Q 005985          314 AKMVLRELMDPLI---FTKFKSFLTKGIDPSCLREF-----LLQVLNRNSSSGNTG-FQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       314 yeLltG~~PF~~~---~~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~~~~~~~-~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      |+|++|++||...   ..........+.++......     ............... ....+.++++++|||.+||++||
T Consensus       210 ~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP  289 (346)
T d1cm8a_         210 AEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDA  289 (346)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSST
T ss_pred             HHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCCh
Confidence            9999999999732   22222333334433222111     111111111211112 23446789999999999999999


Q ss_pred             CCCCCHHHHHcCCCCCCCCC
Q 005985          385 SKRISCLDALRHPFLCGPRW  404 (666)
Q Consensus       385 ~~RpTa~elL~HPwf~~~~~  404 (666)
                      ++||||+|+|+||||++...
T Consensus       290 ~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         290 EQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             TTSCCHHHHHHSGGGTTTC-
T ss_pred             hHCcCHHHHhcChhhCcCCC
Confidence            99999999999999998663


No 31 
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3e-49  Score=416.13  Aligned_cols=262  Identities=20%  Similarity=0.232  Sum_probs=199.3

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      +++|+++++||+|+||    +||+|++..     +++.||||++...    .....+.+|+.+|++++      ||||++
T Consensus         9 ~~rY~i~~~LG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~------h~nii~   73 (318)
T d3blha1           9 VSKYEKLAKIGQGTFG----EVFKARHRK-----TGQKVALKKVLMENEKEGFPITALREIKILQLLK------HENVVN   73 (318)
T ss_dssp             GGGEEEEEEEEECSSS----EEEEEEETT-----TCCEEEEEEC----CTTSSCHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cCCEEEEEEEecCcCe----EEEEEEECC-----CCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhc------CCCccc
Confidence            5899999999999999    999999998     8999999998643    22356789999999998      999999


Q ss_pred             EEEEEeccCC---CCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          161 VHGYVSSHTT---SGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       161 l~~~~~~~~~---~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      +++++.....   ...+.+|+|||||+++.+..+....         ..+++                    ..++.+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~---------~~~~~--------------------~~~~~i~~  124 (318)
T d3blha1          74 LIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL---------VKFTL--------------------SEIKRVMQ  124 (318)
T ss_dssp             EEEEEEC----------CEEEEEECCCEEHHHHHTCTT---------CCCCH--------------------HHHHHHHH
T ss_pred             eEeeeecccccccccCceEEEEEeccCCCccchhhhcc---------ccccc--------------------HHHHHHHH
Confidence            9999863211   2356799999999985554433322         13443                    66899999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC-------------CCCCccCcccccCcCCCCchh
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE-------------DGPNNSSPDSNMDRRQMMIAF  304 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~-------------~~~~Y~APEvl~~~~~ys~ks  304 (666)
                      ||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+..             +++.|+|||++.+...|++++
T Consensus       125 qil~~l~~lH~~~ivHrDlKp~NILl~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~  203 (318)
T d3blha1         125 MLLNGLYYIHRNKILHRDMKAANVLITR-DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPI  203 (318)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEECT-TSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHH
T ss_pred             HHHHHHHHhccCCEEecCcCchheeecC-CCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHH
Confidence            9999999999999999999999999998 99999999999976542             226799999988888899999


Q ss_pred             HHHHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcc----------------c----
Q 005985          305 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQ----------------I----  364 (666)
Q Consensus       305 DIWSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~----------------~----  364 (666)
                      ||||+||++|||++|++||.+.            ........+........+.......                .    
T Consensus       204 DiwSlGvil~el~~g~~pf~~~------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (318)
T d3blha1         204 DLWGAGCIMAEMWTRSPIMQGN------------TEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDR  271 (318)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCS------------SHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHH
T ss_pred             HcccCCceeeeHhhCCCCCCCC------------CHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhh
Confidence            9999999999999999999621            1111122222222221111100000                0    


Q ss_pred             --ccCCcHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005985          365 --LDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  403 (666)
Q Consensus       365 --~~~~s~~l~dLL~~mL~~DP~~RpTa~elL~HPwf~~~~  403 (666)
                        ....+++++|||.+||++||++||||+|+|+||||++.+
T Consensus       272 ~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         272 LKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             HHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             hccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence              012367899999999999999999999999999999754


No 32 
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=2.8e-49  Score=411.58  Aligned_cols=246  Identities=17%  Similarity=0.224  Sum_probs=202.3

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      .++..++|++.+.||+|+||    +||+|+++.     +++.||||+++.. ...+++.+|+++|++++      |||||
T Consensus        12 wei~~~~~~~~~~iG~G~fg----~Vy~a~~~~-----~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~------HpnIv   76 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYG----EVYEGVWKK-----YSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK------HPNLV   76 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTS----SEEEEEEGG-----GTEEEEEEECCTTCSCHHHHHHHHHHHHHCC------CTTBC
T ss_pred             cEecHHHeEEeeEEeeCCCe----EEEEEEECC-----CCeEEEEEEECCccchHHHHHHHHHHHHhCC------CCCEe
Confidence            44566799999999999999    999999998     8999999999753 23466899999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     +.+.+|||||||++|+|.+++....       ...+++                    ..+..++.||
T Consensus        77 ~~~~~~~-----~~~~~~iv~E~~~~g~l~~~l~~~~-------~~~~~~--------------------~~~~~i~~qi  124 (287)
T d1opja_          77 QLLGVCT-----REPPFYIITEFMTYGNLLDYLRECN-------RQEVSA--------------------VVLLYMATQI  124 (287)
T ss_dssp             CEEEEEC-----SSSSCEEEEECCTTCBHHHHHHHSC-------TTTSCH--------------------HHHHHHHHHH
T ss_pred             cCCccEe-----eCCeeEEEeecccCcchHHHhhhcc-------ccchHH--------------------HHHHHHHHHH
Confidence            9999998     7788999999999999999998642       123444                    6688999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC----------CCccCcccccCcCCCCchhHHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~----------~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++.+ ..|+.++|||||
T Consensus       125 ~~gL~yLH~~~iiHrDlKp~NILl~~-~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~k~DiwS~  202 (287)
T d1opja_         125 SSAMEYLEKKNFIHRDLAARNCLVGE-NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY-NKFSIKSDVWAF  202 (287)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHH-CCCSHHHHHHHH
T ss_pred             HHHHHHHHHCCcccCccccCeEEECC-CCcEEEccccceeecCCCCceeeccccccccccChHHHcC-CCCCchhhhhhH
Confidence            99999999999999999999999998 8999999999998765432          56999997654 459999999999


Q ss_pred             HHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC
Q 005985          310 GFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  389 (666)
Q Consensus       310 GviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT  389 (666)
                      ||++|||++|..||.           .+.+...+.+.+..   ..      .++..+.+++++++||.+||+.||++|||
T Consensus       203 Gv~l~ell~~~~p~~-----------~~~~~~~~~~~i~~---~~------~~~~~~~~~~~l~~li~~cl~~dP~~Rps  262 (287)
T d1opja_         203 GVLLWEIATYGMSPY-----------PGIDLSQVYELLEK---DY------RMERPEGCPEKVYELMRACWQWNPSDRPS  262 (287)
T ss_dssp             HHHHHHHHTTSCCSS-----------TTCCHHHHHHHHHT---TC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HHHHHHHHhCCCCCC-----------CcchHHHHHHHHhc---CC------CCCCCccchHHHHHHHHHHcCCCHhHCcC
Confidence            999999999766542           12223232232221   11      12334568899999999999999999999


Q ss_pred             HHHHHc
Q 005985          390 CLDALR  395 (666)
Q Consensus       390 a~elL~  395 (666)
                      ++|+++
T Consensus       263 ~~ei~~  268 (287)
T d1opja_         263 FAEIHQ  268 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999976


No 33 
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.3e-49  Score=419.10  Aligned_cols=271  Identities=18%  Similarity=0.219  Sum_probs=205.1

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh---hHHHHHHHHHHHHHhhhccCCCCCcceEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~  162 (666)
                      ++|++++.||+|+||    +||+|+++.     +++.||||++.+..   ..+.+.+|+++|++|+      ||||++++
T Consensus         8 ~rY~~~~~LG~G~fg----~Vy~~~~~~-----~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~------hp~iv~~~   72 (345)
T d1pmea_           8 PRYTNLSYIGEGAYG----MVCSAYDNV-----NKVRVAIKKISPFEHQTYCQRTLREIKILLRFR------HENIIGIN   72 (345)
T ss_dssp             TTEEEEEECC---CC----CEEEEEETT-----TCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCC------CTTBCCCC
T ss_pred             CCeEEEEEEeeccCe----EEEEEEECC-----CCcEEEEEEEehhcChHHHHHHHHHHHHHHHcC------CCCCCcEE
Confidence            579999999999999    999999998     89999999997532   3346689999999998      99999999


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 005985          163 GYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIG  242 (666)
Q Consensus       163 ~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~a  242 (666)
                      +++..+.......+|++|++ .+|+|.+++...          .+++                    ..++.++.||+.|
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~-~~g~L~~~l~~~----------~l~~--------------------~~i~~i~~qil~a  121 (345)
T d1pmea_          73 DIIRAPTIEQMKDVYLVTHL-MGADLYKLLKTQ----------HLSN--------------------DHICYFLYQILRG  121 (345)
T ss_dssp             EEECCSSTTTCCCEEEEEEC-CCEEHHHHHHHC----------CCCH--------------------HHHHHHHHHHHHH
T ss_pred             EEEeeccccccceEEEEEee-cCCchhhhhhcC----------CCCH--------------------HHHHHHHHHHHHH
Confidence            99975433344556666655 567999999764          3555                    6689999999999


Q ss_pred             HHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC------------CCCCccCcccccCcCCCCchhHHHHHH
Q 005985          243 VNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDMRCVG  310 (666)
Q Consensus       243 L~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~------------~~~~Y~APEvl~~~~~ys~ksDIWSLG  310 (666)
                      |+|||++|||||||||+|||++. ++.+||+|||+|.....            +.+.|+|||++.....|+.++||||+|
T Consensus       122 l~yLH~~~iiHRDIKp~NILl~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG  200 (345)
T d1pmea_         122 LKYIHSANVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVG  200 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECT-TCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHH
T ss_pred             HHHHHHCCCcCCCCCcceEEECC-CCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccC
Confidence            99999999999999999999998 89999999999975432            226899999887777889999999999


Q ss_pred             HHHHHHHhCCCCChhhh---hhhhhccccCCCchhHH------HHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhh
Q 005985          311 FMMAKMVLRELMDPLIF---TKFKSFLTKGIDPSCLR------EFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLA  381 (666)
Q Consensus       311 viLyeLltG~~PF~~~~---~~~~~~~~~g~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~  381 (666)
                      |++|+|++|++||....   .........+.+.....      .................-...+.+|+++++||.+||+
T Consensus       201 ~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~  280 (345)
T d1pmea_         201 CILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLT  280 (345)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSC
T ss_pred             ceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHcc
Confidence            99999999999996321   11111112222221110      0001111111111111113456788999999999999


Q ss_pred             cCcCCCCCHHHHHcCCCCCCCC
Q 005985          382 TKPSKRISCLDALRHPFLCGPR  403 (666)
Q Consensus       382 ~DP~~RpTa~elL~HPwf~~~~  403 (666)
                      +||++||||+|+|+||||+...
T Consensus       281 ~dP~~R~ta~e~L~hpf~~~~~  302 (345)
T d1pmea_         281 FNPHKRIEVEQALAHPYLEQYY  302 (345)
T ss_dssp             SSTTTSCCHHHHHTSGGGTTTC
T ss_pred             CChhHCcCHHHHhcCHhhccCC
Confidence            9999999999999999998655


No 34 
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.1e-49  Score=417.70  Aligned_cols=274  Identities=17%  Similarity=0.207  Sum_probs=207.0

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      .++|+++++||+|+||    +||+|+++.     +++.||||++...    ...+.+.+|+++|++|+      |||||+
T Consensus        17 ~~rY~i~~~LG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~------h~~iv~   81 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYG----SVCAAFDTK-----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMK------HENVIG   81 (348)
T ss_dssp             ETTEEEEEECGGGTTS----SEEEEEETT-----TTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             CCCeEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEECchhcChHHHHHHHHHHHHHHhcC------CCCeee
Confidence            3789999999999999    999999998     8999999999743    23356789999999998      999999


Q ss_pred             EEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHH
Q 005985          161 VHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLL  240 (666)
Q Consensus       161 l~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl  240 (666)
                      +++++......+....++||+|+.+|+|.+++..+          .++|                    ..++.+++||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~~----------~l~e--------------------~~~~~i~~qil  131 (348)
T d2gfsa1          82 LLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ----------KLTD--------------------DHVQFLIYQIL  131 (348)
T ss_dssp             CSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTTC----------CCCH--------------------HHHHHHHHHHH
T ss_pred             EEEEEeeccccccCceEEEEEeecCCchhhhcccc----------cccH--------------------HHHHHHHHHHH
Confidence            99999743322333445566677788999999653          4555                    56899999999


Q ss_pred             HHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC------CCccCcccccCcCCCCchhHHHHHHHHHH
Q 005985          241 IGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDMRCVGFMMA  314 (666)
Q Consensus       241 ~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~------~~Y~APEvl~~~~~ys~ksDIWSLGviLy  314 (666)
                      .||+|||++||+||||||+|||++. ++.+|++|||+|.......      +.|+|||++.+...++.++|||||||++|
T Consensus       132 ~aL~~LH~~giiHrDiKp~NILi~~-~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~  210 (348)
T d2gfsa1         132 RGLKYIHSADIIHRDLKPSNLAVNE-DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  210 (348)
T ss_dssp             HHHHHHHHTTCCCCCCCGGGEEECT-TCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccccCCccccccc-cccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHH
Confidence            9999999999999999999999998 8999999999997654432      67999998888888899999999999999


Q ss_pred             HHHhCCCCChhhh---hhhhhccccCCCchhHHH-----HHHHHhhcCCCCCCCCc-ccccCCcHHHHHHHHHhhhcCcC
Q 005985          315 KMVLRELMDPLIF---TKFKSFLTKGIDPSCLRE-----FLLQVLNRNSSSGNTGF-QILDRNWGAGWNLLSLLLATKPS  385 (666)
Q Consensus       315 eLltG~~PF~~~~---~~~~~~~~~g~~~~~l~~-----~~~~~~~~~~~~~~~~~-~~~~~~s~~l~dLL~~mL~~DP~  385 (666)
                      +|++|++||....   ....+....+........     ................+ .....++++++|||.+||++||+
T Consensus       211 ~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~  290 (348)
T d2gfsa1         211 ELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSD  290 (348)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGG
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChh
Confidence            9999999996321   122222222332221110     01111111111111111 23456899999999999999999


Q ss_pred             CCCCHHHHHcCCCCCCCCC
Q 005985          386 KRISCLDALRHPFLCGPRW  404 (666)
Q Consensus       386 ~RpTa~elL~HPwf~~~~~  404 (666)
                      +||||+|+|+||||++...
T Consensus       291 ~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         291 KRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             GSCCHHHHHTSGGGTTTCC
T ss_pred             hCcCHHHHhcCHhhCCCCC
Confidence            9999999999999998653


No 35 
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9.8e-49  Score=414.06  Aligned_cols=257  Identities=17%  Similarity=0.247  Sum_probs=207.3

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch------hhHHHHHHHHHHHHHhhhccCCCCC
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV------QAQRRGRRAIEVLKKLVRRRLMYHS  156 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~------~~~~~~~rEi~iL~~L~~~~~~~Hp  156 (666)
                      ..+++|++++.||+|+||    +||+|++...  ..+++.||||++++.      ...+.+.+|+++|++++     +||
T Consensus        21 ~~l~~y~~~~~IG~G~fg----~Vy~~~~~~~--~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~-----h~p   89 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYG----KVFLVRKISG--HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSP   89 (322)
T ss_dssp             CCGGGEEEEEEEEETTTE----EEEEEEECSS--TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TCT
T ss_pred             cchhceEEEEEEecCCCe----EEEEEEECcc--CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhcc-----CCC
Confidence            456899999999999999    9999998542  127899999998642      22345689999999998     358


Q ss_pred             cceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHH
Q 005985          157 YSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLM  236 (666)
Q Consensus       157 nIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~  236 (666)
                      ||+++++++.     +...+++||||+.+|+|.+++...+         .+.|                    ..++.++
T Consensus        90 nIv~~~~~~~-----~~~~~~~v~e~~~~~~L~~~i~~~~---------~~~e--------------------~~~~~~~  135 (322)
T d1vzoa_          90 FLVTLHYAFQ-----TETKLHLILDYINGGELFTHLSQRE---------RFTE--------------------HEVQIYV  135 (322)
T ss_dssp             TBCCEEEEEE-----ETTEEEEEECCCCSCBHHHHHHHHS---------CCCH--------------------HHHHHHH
T ss_pred             eEEEeeeeec-----cCCceeeeeecccccHHHHHHHhcc---------cccH--------------------HHHHHHH
Confidence            9999999999     7789999999999999999998764         3444                    5588899


Q ss_pred             HHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC----------CCCccCcccccCcC-CCCchhH
Q 005985          237 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED----------GPNNSSPDSNMDRR-QMMIAFD  305 (666)
Q Consensus       237 ~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~----------~~~Y~APEvl~~~~-~ys~ksD  305 (666)
                      +||+.||+|||++||+||||||+|||++. ++.+||+|||+|+.+...          .+.|+|||.+.+.. .++.++|
T Consensus       136 ~Qi~~al~~lH~~~ivHrDiKp~Nill~~-~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksD  214 (322)
T d1vzoa_         136 GEIVLALEHLHKLGIIYRDIKLENILLDS-NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVD  214 (322)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECT-TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHH
T ss_pred             HHHHHHHHHhhcCCEEeccCCccceeecC-CCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhh
Confidence            99999999999999999999999999998 899999999999865432          27899999876544 5788999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcC
Q 005985          306 MRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  385 (666)
Q Consensus       306 IWSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~  385 (666)
                      ||||||+||+|++|++||....           .................       +....+|+++++||.+||++||+
T Consensus       215 IWSlG~iLyelltG~~PF~~~~-----------~~~~~~~i~~~~~~~~~-------~~~~~~s~~~~~li~~~l~~dP~  276 (322)
T d1vzoa_         215 WWSLGVLMYELLTGASPFTVDG-----------EKNSQAEISRRILKSEP-------PYPQEMSALAKDLIQRLLMKDPK  276 (322)
T ss_dssp             HHHHHHHHHHHHHSSCTTSCTT-----------SCCCHHHHHHHHHHCCC-------CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             hHHHHHHHHHHHhCCCCCCCCC-----------HHHHHHHHHHhcccCCC-------CCcccCCHHHHHHHHHHcccCHH
Confidence            9999999999999999996221           11111222222222221       22346899999999999999999


Q ss_pred             CCC-----CHHHHHcCCCCCCCC
Q 005985          386 KRI-----SCLDALRHPFLCGPR  403 (666)
Q Consensus       386 ~Rp-----Ta~elL~HPwf~~~~  403 (666)
                      +||     |++|+|+||||++..
T Consensus       277 ~R~s~~~~t~~eil~Hpff~~i~  299 (322)
T d1vzoa_         277 KRLGCGPRDADEIKEHLFFQKIN  299 (322)
T ss_dssp             GSTTSSTTTHHHHHTSGGGTTCC
T ss_pred             HcCCCCcccHHHHHcCHhhcCCC
Confidence            999     589999999999876


No 36 
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.7e-48  Score=412.67  Aligned_cols=271  Identities=14%  Similarity=0.102  Sum_probs=203.4

Q ss_pred             ccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcc
Q 005985           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (666)
Q Consensus        82 ~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (666)
                      ++..++|++++.||+|+||    +||+|++...+.......||+|.+...   .....+.+|+.+|.++.     .||||
T Consensus        33 ei~~~~~~l~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~HpnI  103 (325)
T d1rjba_          33 EFPRENLEFGKVLGSGAFG----KVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHENI  103 (325)
T ss_dssp             BCCGGGEEEEEEEEECSSE----EEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTTB
T ss_pred             cCCHHHeEEeeEEeeCCCe----EEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhc-----CCCcE
Confidence            4556899999999999999    999999987433334558999998643   23345689999999994     39999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhc--cCCCCCCCCCCcccHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRK--VGDDSIGGPAASRQLRLIRLLM  236 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r--~~~~~~~~~~~~~~~~~i~~i~  236 (666)
                      |++++++.     +.+.+|||||||++|+|.++|..+..        .+++....-  ...-........++...++.|+
T Consensus       104 v~l~~~~~-----~~~~~~lv~Ey~~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  170 (325)
T d1rjba_         104 VNLLGACT-----LSGPIYLIFEYCCYGDLLNYLRSKRE--------KFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFA  170 (325)
T ss_dssp             CCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTTTT--------CC---------------------CCHHHHHHHH
T ss_pred             eEEEEEEe-----eCCeEEEEEEcCCCCcHHHHHHhccC--------CCcchhhhhccccccccccccCCCCHHHHHHHH
Confidence            99999998     77889999999999999999987531        111111000  0000001122346678899999


Q ss_pred             HHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----------CCCccCcccccCcCCCCchhH
Q 005985          237 RDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFD  305 (666)
Q Consensus       237 ~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----------~~~Y~APEvl~~~~~ys~ksD  305 (666)
                      .||+.||+|||++|||||||||+|||++. ++.+||+|||+|+.....           .+.|+|||++. ...|+.++|
T Consensus       171 ~qi~~gl~yLH~~~IiHRDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~~D  248 (325)
T d1rjba_         171 YQVAKGMEFLEFKSCVHRDLAARNVLVTH-GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF-EGIYTIKSD  248 (325)
T ss_dssp             HHHHHHHHHHHHTTEEETTCSGGGEEEET-TTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHH
T ss_pred             HHHHHHHHHHHhCCeeeccCchhcccccc-CCeEEEeeccccccccCCCceeeeccccCCCccCChHHHc-CCCCCccee
Confidence            99999999999999999999999999998 899999999999765433           25799999765 456999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          306 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       306 IWSLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      ||||||++|||++ |.+||.+..           ....+...+...    .     .++....+++++++||.+||+.||
T Consensus       249 iwS~Gvil~emlt~g~~Pf~~~~-----------~~~~~~~~~~~~----~-----~~~~p~~~~~~l~~li~~cl~~dP  308 (325)
T d1rjba_         249 VWSYGILLWEIFSLGVNPYPGIP-----------VDANFYKLIQNG----F-----KMDQPFYATEEIYIIMQSCWAFDS  308 (325)
T ss_dssp             HHHHHHHHHHHTTTSCCSSTTCC-----------CSHHHHHHHHTT----C-----CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             ccchhHHHHHHHhCCCCCCCCCC-----------HHHHHHHHHhcC----C-----CCCCCCcCCHHHHHHHHHHcCCCh
Confidence            9999999999997 899986321           112222222211    1     123345678999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005985          385 SKRISCLDALRH  396 (666)
Q Consensus       385 ~~RpTa~elL~H  396 (666)
                      ++|||++|+++|
T Consensus       309 ~~RPt~~ei~~~  320 (325)
T d1rjba_         309 RKRPSFPNLTSF  320 (325)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999976


No 37 
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.3e-48  Score=397.42  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=191.1

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-hhHHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      .++|++++.||+|+||    +||+|+++.      ++.||||+++.. ...+++.+|+++|++++      |||||++++
T Consensus         4 p~~~~~~~~iG~G~fg----~Vy~~~~~~------~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~------HpnIv~~~g   67 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFG----LVHLGYWLN------KDKVAIKTIREGAMSEEDFIEEAEVMMKLS------HPKLVQLYG   67 (263)
T ss_dssp             CSCEEEEEEEECCSSC----CEEEEEETT------TEEEEEEECCSSSSCHHHHHHHHHHHHHCC------CTTBCCEEE
T ss_pred             hHHcEEEEEEeeCCCe----EEEEEEECC------CCEEEEEEECCCcCcHHHHHHHHHHHHhcC------CCCcccccc
Confidence            3689999999999999    999999874      678999999753 34466899999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      ++.     +.+.+|+|||||++|+|.+++....        ..+++                    ..+..++.||+.||
T Consensus        68 ~~~-----~~~~~~lv~E~~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~i~~qia~gl  114 (263)
T d1sm2a_          68 VCL-----EQAPICLVFEFMEHGCLSDYLRTQR--------GLFAA--------------------ETLLGMCLDVCEGM  114 (263)
T ss_dssp             EEC-----SSSSCEEEEECCTTCBHHHHHHTTT--------TCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             eec-----cCCceEEEEEecCCCcHHHHhhccc--------cCCCH--------------------HHHHHHHHHHHHHH
Confidence            998     6788999999999999999987642        13443                    55788999999999


Q ss_pred             HHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC----------CCCccCcccccCcCCCCchhHHHHHHHHH
Q 005985          244 NYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCVGFMM  313 (666)
Q Consensus       244 ~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~----------~~~Y~APEvl~~~~~ys~ksDIWSLGviL  313 (666)
                      +|||+++|+||||||+|||++. ++.+||+|||+|+.....          .+.|+|||++.+ ..|+.++|||||||++
T Consensus       115 ~~lH~~~iiHrDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~k~DVwS~Gvil  192 (263)
T d1sm2a_         115 AYLEEACVIHRDLAARNCLVGE-NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF-SRYSSKSDVWSFGVLM  192 (263)
T ss_dssp             HHHHHTTCCCTTCSGGGEEECG-GGCEEECSCC------------------CTTSCCHHHHTT-CCCCHHHHHHHHHHHH
T ss_pred             HhhhccceeecccchhheeecC-CCCeEecccchheeccCCCceeecceecCcccCChHHhcC-CCCCchhhhcchHHHH
Confidence            9999999999999999999998 899999999999865432          257999997654 4599999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHH
Q 005985          314 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  392 (666)
Q Consensus       314 yeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~e  392 (666)
                      |||+| |.+||.            +....++...+..   ....      .....+++++.+||.+||+.||++|||++|
T Consensus       193 ~el~t~~~~~~~------------~~~~~~~~~~i~~---~~~~------~~p~~~~~~l~~li~~cl~~~p~~Rps~~~  251 (263)
T d1sm2a_         193 WEVFSEGKIPYE------------NRSNSEVVEDIST---GFRL------YKPRLASTHVYQIMNHCWKERPEDRPAFSR  251 (263)
T ss_dssp             HHHHTTSCCTTC------------SCCHHHHHHHHHH---TCCC------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHCCCCCCC------------CCCHHHHHHHHHh---cCCC------CCccccCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99999 466553            2222222222222   1111      122456889999999999999999999999


Q ss_pred             HHcC
Q 005985          393 ALRH  396 (666)
Q Consensus       393 lL~H  396 (666)
                      +++|
T Consensus       252 il~~  255 (263)
T d1sm2a_         252 LLRQ  255 (263)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986


No 38 
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-48  Score=403.66  Aligned_cols=246  Identities=17%  Similarity=0.181  Sum_probs=194.2

Q ss_pred             ccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecc----hhhHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS----VQAQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        82 ~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~----~~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      ++..++|++++.||+|+||    +||+|+..        ..||||+++.    ....+.+.+|+.+|++++      |||
T Consensus         4 ei~~~~~~~~~~lG~G~fg----~Vy~~~~~--------~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~------Hpn   65 (276)
T d1uwha_           4 EIPDGQITVGQRIGSGSFG----TVYKGKWH--------GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR------HVN   65 (276)
T ss_dssp             BCCTTCCCCCSEEEECSSC----EEEEEESS--------SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCC------CTT
T ss_pred             ccccccEEEEEEEeeCCCc----EEEEEEEC--------CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCC------CCC
Confidence            4556899999999999999    99999743        3599999873    233456789999999998      999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||++++++.      .+.+|||||||++|+|.+++...+        ..+++                    ..+..++.
T Consensus        66 Iv~~~~~~~------~~~~~lv~Ey~~~g~L~~~l~~~~--------~~~~~--------------------~~~~~i~~  111 (276)
T d1uwha_          66 ILLFMGYST------APQLAIVTQWCEGSSLYHHLHIIE--------TKFEM--------------------IKLIDIAR  111 (276)
T ss_dssp             BCCEEEEEC------SSSCEEEEECCCEEEHHHHHHTSC--------CCCCH--------------------HHHHHHHH
T ss_pred             EeeeeEEEe------ccEEEEEEecCCCCCHHHHHhhcc--------CCCCH--------------------HHHHHHHH
Confidence            999999865      346899999999999999997642        13444                    56888999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC-----------CCCCccCcccccCc--CCCCchh
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE-----------DGPNNSSPDSNMDR--RQMMIAF  304 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~-----------~~~~Y~APEvl~~~--~~ys~ks  304 (666)
                      ||+.||+|||++|||||||||+|||++. ++.+||+|||+|+....           +++.|+|||++.+.  ..|+.++
T Consensus       112 qi~~gl~yLH~~~ivHrDlKp~NiLl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~s  190 (276)
T d1uwha_         112 QTAQGMDYLHAKSIIHRDLKSNNIFLHE-DLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS  190 (276)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEEET-TSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHH
T ss_pred             HHHHHHHHHhcCCEeccccCHHHEEEcC-CCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchh
Confidence            9999999999999999999999999998 89999999999976532           22679999987643  4589999


Q ss_pred             HHHHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          305 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       305 DIWSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      |||||||++|||+||+.||.+..           +...+...+......  +   ........+++++++||.+||+.||
T Consensus       191 DiwS~Gv~l~el~tg~~Pf~~~~-----------~~~~~~~~~~~~~~~--p---~~~~~~~~~~~~l~~li~~cl~~dp  254 (276)
T d1uwha_         191 DVYAFGIVLYELMTGQLPYSNIN-----------NRDQIIFMVGRGYLS--P---DLSKVRSNCPKAMKRLMAECLKKKR  254 (276)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTCC-----------CHHHHHHHHHHTSCC--C---CGGGSCTTCCHHHHHHHHHHTCSSG
T ss_pred             hhhhhHHHHHHHHHCCCCCCCCC-----------hHHHHHHHHhcCCCC--C---cchhccccchHHHHHHHHHHcCCCH
Confidence            99999999999999999996321           111122222111111  0   0112335678999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005985          385 SKRISCLDALRH  396 (666)
Q Consensus       385 ~~RpTa~elL~H  396 (666)
                      ++|||++|+++|
T Consensus       255 ~~RPt~~~il~~  266 (276)
T d1uwha_         255 DERPLFPQILAS  266 (276)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999875


No 39 
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=5.3e-48  Score=404.25  Aligned_cols=246  Identities=16%  Similarity=0.144  Sum_probs=191.9

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      +..++|++.+.||+|+||    +||+|+++..+.  ....||||.+...   ...+.+.+|+++|++|+      |||||
T Consensus        23 i~~~~~~~~~~lG~G~fg----~Vy~~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv   90 (299)
T d1jpaa_          23 IDISCVKIEQVIGAGEFG----EVCSGHLKLPGK--REIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD------HPNVI   90 (299)
T ss_dssp             CCGGGEEEEEEEEECSSS----EEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC------CTTBC
T ss_pred             hChhhcEEeeEEeeCCCe----EEEEEEEeCCCC--EEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC------CCCCc
Confidence            445789999999999999    999999986211  2236899998642   33456789999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     +.+.+|||||||++|+|.+++....        ..+++                    ..+..++.||
T Consensus        91 ~l~g~~~-----~~~~~~iv~Ey~~~g~L~~~~~~~~--------~~l~~--------------------~~~~~i~~qi  137 (299)
T d1jpaa_          91 HLEGVVT-----KSTPVMIITEFMENGSLDSFLRQND--------GQFTV--------------------IQLVGMLRGI  137 (299)
T ss_dssp             CEEEEEC-----SSSSCEEEEECCTTEEHHHHHHTTT--------TCSCH--------------------HHHHHHHHHH
T ss_pred             cEEEEEe-----eCCEEEEEEEecCCCcceeeecccc--------CCCCH--------------------HHHHHHHHHH
Confidence            9999998     6788999999999999999988642        13444                    5688899999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC--------------CCCccCcccccCcCCCCchhH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED--------------GPNNSSPDSNMDRRQMMIAFD  305 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~--------------~~~Y~APEvl~~~~~ys~ksD  305 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.....              .+.|+|||++.+ ..|+.++|
T Consensus       138 a~gl~yLH~~~iiHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~sD  215 (299)
T d1jpaa_         138 AAGMKYLADMNYVHRDLAARNILVNS-NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY-RKFTSASD  215 (299)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCC-----------------------CGGGSCHHHHHS-CCCCHHHH
T ss_pred             HHHHHHHhhCCCccCccccceEEECC-CCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhc-CCCCcccc
Confidence            99999999999999999999999998 999999999999865432              246999997654 56999999


Q ss_pred             HHHHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          306 MRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       306 IWSLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      ||||||++|||+| |++||.+.            ....+...+   ....      .++....+++++.+||.+||+.||
T Consensus       216 vwS~Gvvl~el~t~g~~Pf~~~------------~~~~~~~~i---~~~~------~~~~~~~~~~~l~~li~~cl~~~P  274 (299)
T d1jpaa_         216 VWSYGIVMWEVMSYGERPYWDM------------TNQDVINAI---EQDY------RLPPPMDCPSALHQLMLDCWQKDR  274 (299)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTC------------CHHHHHHHH---HTTC------CCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             cccchHHHHHHHhCCCCCCCCC------------CHHHHHHHH---HcCC------CCCCCccchHHHHHHHHHHcCCCH
Confidence            9999999999998 89998632            222222222   2211      122345688999999999999999


Q ss_pred             CCCCCHHHHHcC
Q 005985          385 SKRISCLDALRH  396 (666)
Q Consensus       385 ~~RpTa~elL~H  396 (666)
                      ++|||+.|++++
T Consensus       275 ~~RPs~~ei~~~  286 (299)
T d1jpaa_         275 NHRPKFGQIVNT  286 (299)
T ss_dssp             TTSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999998764


No 40 
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-48  Score=402.62  Aligned_cols=249  Identities=16%  Similarity=0.218  Sum_probs=199.1

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      .++..++|++++.||+|+||    .||+|+++      +++.||||+++.. ...+.+.+|+++|++++      |||||
T Consensus         8 wei~~~~~~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~------HpnIv   71 (272)
T d1qpca_           8 WEVPRETLKLVERLGAGQFG----EVWMGYYN------GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQ------HQRLV   71 (272)
T ss_dssp             TBCCGGGEEEEEEEEEETTE----EEEEEEET------TTEEEEEEEECTTSSCHHHHHHHHHHHHHCC------CTTBC
T ss_pred             eecCHHHeEEeEEEecCCCc----EEEEEEEC------CCCEEEEEEEccCcCCHHHHHHHHHHHHhCC------CCCEe
Confidence            34555899999999999999    99999986      4788999999753 34456899999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     + +.+|||||||++|+|.+++....       ...+++                    ..+..|+.||
T Consensus        72 ~~~g~~~-----~-~~~~iv~Ey~~~g~L~~~~~~~~-------~~~l~~--------------------~~~~~i~~qi  118 (272)
T d1qpca_          72 RLYAVVT-----Q-EPIYIITEYMENGSLVDFLKTPS-------GIKLTI--------------------NKLLDMAAQI  118 (272)
T ss_dssp             CEEEEEC-----S-SSCEEEEECCTTCBHHHHTTSHH-------HHTCCH--------------------HHHHHHHHHH
T ss_pred             EEEeeec-----c-CCeEEEEEeCCCCcHHHHHhhcC-------CCCCCH--------------------HHHHHHHHHH
Confidence            9999875     3 45789999999999999876531       123444                    6688999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC----------CCccCcccccCcCCCCchhHHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~----------~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++.+ ..|+.++|||||
T Consensus       119 ~~gl~~lH~~~ivHrDiKp~NIll~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~-~~~~~~sDvwS~  196 (272)
T d1qpca_         119 AEGMAFIEERNYIHRDLRAANILVSD-TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY-GTFTIKSDVWSF  196 (272)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEECT-TSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHH-CEECHHHHHHHH
T ss_pred             HHHHHHHHhCCcccCccchhheeeec-ccceeeccccceEEccCCccccccccCCcccccChHHHhC-CCCCchhhhhhh
Confidence            99999999999999999999999998 9999999999998764332          57999997654 458999999999


Q ss_pred             HHHHHHHHhC-CCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC
Q 005985          310 GFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  388 (666)
Q Consensus       310 GviLyeLltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp  388 (666)
                      ||++|||+|| .+||.            +.....   .+..+.....      ....+.+++++.+||.+||+.||++||
T Consensus       197 Gvvl~ellt~~~~~~~------------~~~~~~---~~~~i~~~~~------~~~p~~~~~~l~~li~~cl~~~P~~Rp  255 (272)
T d1qpca_         197 GILLTEIVTHGRIPYP------------GMTNPE---VIQNLERGYR------MVRPDNCPEELYQLMRLCWKERPEDRP  255 (272)
T ss_dssp             HHHHHHHHTTTCCSST------------TCCHHH---HHHHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHHhCCCCCCC------------CCCHHH---HHHHHHhcCC------CCCcccChHHHHHHHHHHcCCCHhHCc
Confidence            9999999995 45543            111222   2222222111      123356889999999999999999999


Q ss_pred             CHHHHHc--CCCCCC
Q 005985          389 SCLDALR--HPFLCG  401 (666)
Q Consensus       389 Ta~elL~--HPwf~~  401 (666)
                      |++|+++  |+||+.
T Consensus       256 t~~ei~~~L~~~fts  270 (272)
T d1qpca_         256 TFDYLRSVLEDFFTA  270 (272)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhhhhhc
Confidence            9999998  788753


No 41 
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=4.7e-48  Score=399.64  Aligned_cols=250  Identities=16%  Similarity=0.152  Sum_probs=197.4

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-----hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      .++|++.+.||+|+||    +||+|++..     +++.||||+++..     .....+.+|+++|+.++      |||||
T Consensus         6 ~drY~i~~~lG~G~fg----~Vy~a~~~~-----~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~------hpniv   70 (277)
T d1o6ya_           6 SDRYELGEILGFGGMS----EVHLARDLR-----LHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN------HPAIV   70 (277)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCC------CTTBC
T ss_pred             cceeEEeEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcC------CCCCC
Confidence            3789999999999999    999999998     8999999999742     22345689999999997      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.... .....+|||||||++|+|.+++...+         .+++                    ..++.+++||
T Consensus        71 ~~~~~~~~~~-~~~~~~~lvmE~~~g~~L~~~~~~~~---------~l~~--------------------~~~~~i~~qi  120 (277)
T d1o6ya_          71 AVYDTGEAET-PAGPLPYIVMEYVDGVTLRDIVHTEG---------PMTP--------------------KRAIEVIADA  120 (277)
T ss_dssp             CEEEEEEEEC-SSSEEEEEEEECCCEEEHHHHHHHHC---------SCCH--------------------HHHHHHHHHH
T ss_pred             cccceeeecc-CCCceEEEEEECCCCCEehhhhcccC---------CCCH--------------------HHHHHHHHHH
Confidence            9999997421 12346899999999999999998754         4555                    5588899999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC------------CCCCccCcccccCcCCCCchhHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE------------DGPNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~------------~~~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      +.||+|||++||+||||||+|||++. ++.++|+|||.+.....            +.+.|+|||++.+ ..|++++|||
T Consensus       121 ~~al~~lH~~~iiHrDiKP~NIll~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~-~~~~~~~Diw  198 (277)
T d1o6ya_         121 CQALNFSHQNGIIHRDVKPANIMISA-TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG-DSVDARSDVY  198 (277)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEEET-TSCEEECCCTTCEECC----------------TTCCHHHHTT-CCCCHHHHHH
T ss_pred             HHHHHHHHhCCccCccccCcccccCc-cccceeehhhhhhhhccccccccccccccCcccccCHHHHcC-CCCCcceecc
Confidence            99999999999999999999999998 99999999999865432            2378999997654 5699999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCC
Q 005985          308 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  387 (666)
Q Consensus       308 SLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~R  387 (666)
                      ||||++|+|+||++||..            ....   +.+...+.....   ......+.+|+++.+||.+||++||++|
T Consensus       199 SlGvilyelltG~~Pf~~------------~~~~---~~~~~~~~~~~~---~~~~~~~~~s~~l~~li~~~L~~dp~~R  260 (277)
T d1o6ya_         199 SLGCVLYEVLTGEPPFTG------------DSPV---SVAYQHVREDPI---PPSARHEGLSADLDAVVLKALAKNPENR  260 (277)
T ss_dssp             HHHHHHHHHHHSSCSCCC------------SSHH---HHHHHHHHCCCC---CGGGTSSSCCHHHHHHHHHHTCSSGGGS
T ss_pred             cchHHHHHHHhCCCCCCC------------cCHH---HHHHHHHhcCCC---CCchhccCCCHHHHHHHHHHccCCHhHC
Confidence            999999999999999962            1221   122222222111   1113346789999999999999999999


Q ss_pred             CCHHHHHcCCCC
Q 005985          388 ISCLDALRHPFL  399 (666)
Q Consensus       388 pTa~elL~HPwf  399 (666)
                      |+..+.|.|+|+
T Consensus       261 ~~sa~~l~~~l~  272 (277)
T d1o6ya_         261 YQTAAEMRADLV  272 (277)
T ss_dssp             CSSHHHHHHHHH
T ss_pred             HhHHHHHHHHHH
Confidence            954444455554


No 42 
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9.8e-48  Score=399.59  Aligned_cols=247  Identities=16%  Similarity=0.180  Sum_probs=196.9

Q ss_pred             ccCCeEEEeE-ecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           84 NMGDFKILDR-VSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        84 ~~~~Y~i~~~-LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      ..++|.+.+. ||+|+||    +||+|.++..+   ++..||||+++..   ...+.+.+|+++|++++      |||||
T Consensus         6 ~~~~~~~~~~~iG~G~fg----~Vy~~~~~~~~---~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~------HpnIv   72 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFG----SVRQGVYRMRK---KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD------NPYIV   72 (285)
T ss_dssp             CGGGEEEEEEEEECCTTE----EEEEEEEC------CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             cccCeEECCcEEecccCe----EEEEEEEecCC---CcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCC------CCCEe
Confidence            3467888884 9999999    99999887522   4568999999743   33456789999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     + +.+|||||||++|+|.+++...+        ..+++                    ..+..++.||
T Consensus        73 ~l~g~~~-----~-~~~~lvmE~~~~g~L~~~l~~~~--------~~l~~--------------------~~~~~i~~qi  118 (285)
T d1u59a_          73 RLIGVCQ-----A-EALMLVMEMAGGGPLHKFLVGKR--------EEIPV--------------------SNVAELLHQV  118 (285)
T ss_dssp             CEEEEEE-----S-SSEEEEEECCTTEEHHHHHTTCT--------TTSCH--------------------HHHHHHHHHH
T ss_pred             eEeeeec-----c-CeEEEEEEeCCCCcHHHHhhccc--------cCCCH--------------------HHHHHHHHHH
Confidence            9999987     3 35899999999999999986532        13444                    6688999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC------------CCccCcccccCcCCCCchhHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~------------~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.+....            +.|+|||++.+ ..|+.++|||
T Consensus       119 ~~gL~ylH~~~iiHrDlKp~Nill~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~ksDVw  196 (285)
T d1u59a_         119 SMGMKYLEEKNFVHRDLAARNVLLVN-RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF-RKFSSRSDVW  196 (285)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEEEE-TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHH-CEECHHHHHH
T ss_pred             HHHHHHHHhCCeecCcCchhheeecc-CCceeeccchhhhcccccccccccccccccCccccChHHHhC-CCCCccchhh
Confidence            99999999999999999999999998 9999999999998664322            46999997654 4589999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          308 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       308 SLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      ||||++|||+| |++||.+.            ...++...+   .....      ++..+.+++++.+||.+||+.||++
T Consensus       197 S~Gv~l~E~lt~G~~Pf~~~------------~~~~~~~~i---~~~~~------~~~p~~~~~~l~~li~~cl~~~p~~  255 (285)
T d1u59a_         197 SYGVTMWEALSYGQKPYKKM------------KGPEVMAFI---EQGKR------MECPPECPPELYALMSDCWIYKWED  255 (285)
T ss_dssp             HHHHHHHHHHTTSCCTTTTC------------CTHHHHHHH---HTTCC------CCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             cchHHHHHHHhCCCCCCCCC------------CHHHHHHHH---HcCCC------CCCCCcCCHHHHHHHHHHcCCCHhH
Confidence            99999999998 89998622            222222222   22111      2334578899999999999999999


Q ss_pred             CCCHHHH---HcCCCCC
Q 005985          387 RISCLDA---LRHPFLC  400 (666)
Q Consensus       387 RpTa~el---L~HPwf~  400 (666)
                      |||+.++   |+|+|+.
T Consensus       256 RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         256 RPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             SCCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            9999887   6788774


No 43 
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.1e-48  Score=399.45  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=190.9

Q ss_pred             eEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh----hHHHHHHHHHHHHHhhhccCCCCCcceEEEEEEec
Q 005985           92 DRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ----AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSS  167 (666)
Q Consensus        92 ~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~----~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~~~  167 (666)
                      ++||+|+||    +||+|.+....   +++.||||+++...    ..+.+.+|+++|++++      |||||++++++. 
T Consensus        13 k~iG~G~fG----~Vy~~~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~------HpnIv~~~g~~~-   78 (277)
T d1xbba_          13 KELGSGNFG----TVKKGYYQMKK---VVKTVAVKILKNEANDPALKDELLAEANVMQQLD------NPYIVRMIGICE-   78 (277)
T ss_dssp             EEEEECSSE----EEEEEEEECSS---SEEEEEEEEEC-----CHHHHHHHHHHHHHHTCC------CTTBCCEEEEEE-
T ss_pred             CCcccCCCe----EEEEEEEccCC---cCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCC------CCCCceEEEEec-
Confidence            479999999    99999876422   56889999997422    2356789999999998      999999999987 


Q ss_pred             cCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 005985          168 HTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNYLH  247 (666)
Q Consensus       168 ~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~yLH  247 (666)
                          + +..|||||||++|+|.+++.+.+         .+++                    ..+..|+.||+.||+|||
T Consensus        79 ----~-~~~~lvmE~~~~g~L~~~l~~~~---------~l~~--------------------~~~~~i~~qi~~gl~ylH  124 (277)
T d1xbba_          79 ----A-ESWMLVMEMAELGPLNKYLQQNR---------HVKD--------------------KNIIELVHQVSMGMKYLE  124 (277)
T ss_dssp             ----S-SSEEEEEECCTTEEHHHHHHHCT---------TCCH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred             ----c-CCEEEEEEcCCCCcHHHHHhhcc---------CCCH--------------------HHHHHHHHHHHHHHhhHH
Confidence                3 34789999999999999998753         4555                    568889999999999999


Q ss_pred             hcCccccccccceEEEccCCCceEEeeeccccccCCC------------CCCccCcccccCcCCCCchhHHHHHHHHHHH
Q 005985          248 SHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  315 (666)
Q Consensus       248 s~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~------------~~~Y~APEvl~~~~~ys~ksDIWSLGviLye  315 (666)
                      ++||+||||||+|||++. ++.+||+|||+|+.+...            .+.|+|||++.+ ..|+.++|||||||++||
T Consensus       125 ~~~iiHrDlKp~Nill~~-~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~-~~~~~~sDiwS~Gv~l~e  202 (277)
T d1xbba_         125 ESNFVHRDLAARNVLLVT-QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY-YKFSSKSDVWSFGVLMWE  202 (277)
T ss_dssp             HTTEECSCCSGGGEEEEE-TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHH-CEEEHHHHHHHHHHHHHH
T ss_pred             hCCcccCCCcchhhcccc-cCcccccchhhhhhccccccccccccccCCCceecCchhhcC-CCCCchhhhccchhhhhH
Confidence            999999999999999998 999999999999865432            257999997654 458999999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHH-
Q 005985          316 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDA-  393 (666)
Q Consensus       316 Llt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~el-  393 (666)
                      |++ |++||.+            ....++...+.   ...      .++....+++++++||.+||+.||++|||++++ 
T Consensus       203 llt~g~~Pf~~------------~~~~~~~~~i~---~~~------~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~  261 (277)
T d1xbba_         203 AFSYGQKPYRG------------MKGSEVTAMLE---KGE------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVE  261 (277)
T ss_dssp             HHTTTCCSSTT------------CCHHHHHHHHH---TTC------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             HhhCCCCCCCC------------CCHHHHHHHHH---cCC------CCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence            998 8999862            22222222221   111      122335678999999999999999999999998 


Q ss_pred             --HcCCCCC
Q 005985          394 --LRHPFLC  400 (666)
Q Consensus       394 --L~HPwf~  400 (666)
                        |+|+|++
T Consensus       262 ~~L~~~~~~  270 (277)
T d1xbba_         262 LRLRNYYYD  270 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhhCHHhh
Confidence              5676653


No 44 
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.7e-47  Score=407.93  Aligned_cols=270  Identities=21%  Similarity=0.263  Sum_probs=199.3

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch----hhHHHHHHHHHHHHHhhhccCCCCCcceE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV----QAQRRGRRAIEVLKKLVRRRLMYHSYSMQ  160 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~----~~~~~~~rEi~iL~~L~~~~~~~HpnIVk  160 (666)
                      +++|+++++||+|+||    +||+|+++.     +++.||||++...    .....+.+|+.+|++++      |||||+
T Consensus        16 ~~~Y~i~~~LG~G~fg----~V~~~~d~~-----t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~------hpnIv~   80 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQG----IVCAAYDAV-----LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN------HKNIIS   80 (355)
T ss_dssp             ETTEEEEEECSCC--C----EEEEEEETT-----TTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCC------CTTBCC
T ss_pred             cCCeEEEEEeecCcCe----EEEEEEECC-----CCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcC------CCCeeE
Confidence            4789999999999999    999999998     8999999999743    23345789999999997      999999


Q ss_pred             EEEEEeccCC-CCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          161 VHGYVSSHTT-SGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       161 l~~~~~~~~~-~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++|..... +....+|+|||||.+ +|.+.+..           .+++                    ..++.+++||
T Consensus        81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~-~l~~~~~~-----------~~~~--------------------~~i~~~~~qi  128 (355)
T d2b1pa1          81 LLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQM-----------ELDH--------------------ERMSYLLYQM  128 (355)
T ss_dssp             CSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTS-----------CCCH--------------------HHHHHHHHHH
T ss_pred             EEEEEecccccccCceeEEEEeccch-HHHHhhhc-----------CCCH--------------------HHHHHHHHHH
Confidence            9999964322 255799999999987 66665543           3455                    5689999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC--------CCCccCcccccCcCCCCchhHHHHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED--------GPNNSSPDSNMDRRQMMIAFDMRCVGF  311 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~--------~~~Y~APEvl~~~~~ys~ksDIWSLGv  311 (666)
                      +.||+|||++||+||||||+|||++. ++.+|++|||+++.....        .+.|+|||++.+ ..|++++||||+||
T Consensus       129 l~gl~~LH~~giiHrDlKP~Nil~~~-~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~-~~~~~~~DiwSlG~  206 (355)
T d2b1pa1         129 LCGIKHLHSAGIIHRDLKPSNIVVKS-DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSVGC  206 (355)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCCCC---------------CCTTCCHHHHTT-CCCCTTHHHHHHHH
T ss_pred             HHHHHHhhhcccccccCCcccccccc-ccceeeechhhhhccccccccccccccccccChhhhcC-CCCCCCcccccccc
Confidence            99999999999999999999999998 899999999998765542        378999997765 46899999999999


Q ss_pred             HHHHHHhCCCCChhh---hhhhhhccccCCCchhHH----HHHHHHhhcCCCCCCCCc-------------ccccCCcHH
Q 005985          312 MMAKMVLRELMDPLI---FTKFKSFLTKGIDPSCLR----EFLLQVLNRNSSSGNTGF-------------QILDRNWGA  371 (666)
Q Consensus       312 iLyeLltG~~PF~~~---~~~~~~~~~~g~~~~~l~----~~~~~~~~~~~~~~~~~~-------------~~~~~~s~~  371 (666)
                      ++|+|++|++||...   .....+....+.+.....    ..................             ......+++
T Consensus       207 ~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  286 (355)
T d2b1pa1         207 IMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQ  286 (355)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHH
T ss_pred             hHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHH
Confidence            999999999999632   222222222222211110    111111111111111111             111234678


Q ss_pred             HHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005985          372 GWNLLSLLLATKPSKRISCLDALRHPFLCGPR  403 (666)
Q Consensus       372 l~dLL~~mL~~DP~~RpTa~elL~HPwf~~~~  403 (666)
                      +++||++||++||++||||+|+|+||||+...
T Consensus       287 ~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         287 ARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            99999999999999999999999999998743


No 45 
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5e-47  Score=396.04  Aligned_cols=266  Identities=16%  Similarity=0.138  Sum_probs=196.3

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      +..++|++++.||+|+||    .||+|++....+..+++.||||+++..   ...+...+|+.++.++.     .|+|||
T Consensus        10 i~~~~y~~~~~iG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv   80 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFG----QVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVV   80 (299)
T ss_dssp             CCGGGEEEEEEEEECSSC----EEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHC-----CCTTBC
T ss_pred             ccHHHEEEeeEEeecCCe----EEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhc-----CCCeEE
Confidence            445789999999999999    999999987665667889999999743   23455688889999887     599999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      .+++++..    .+..+++|||||++|+|.++|...+....   .....+          .......++...+..++.||
T Consensus        81 ~~~~~~~~----~~~~~~iv~E~~~~g~L~~~l~~~~~~~~---~~~~~~----------~~~~~~~l~~~~~~~~~~qi  143 (299)
T d1ywna1          81 NLLGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFV---PYKVAP----------EDLYKDFLTLEHLICYSFQV  143 (299)
T ss_dssp             CEEEEECS----TTSCCEEEEECCTTCBHHHHHHHTGGGBC---C---------------------CBCHHHHHHHHHHH
T ss_pred             Eeeeeecc----CCCeEEEEEEecCCCcHHHHHHhcccccc---ccccch----------hhhhcccCCHHHHHHHHHHH
Confidence            99999862    55679999999999999999987532110   000000          00112345668899999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----------CCCccCcccccCcCCCCchhHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRC  308 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----------~~~Y~APEvl~~~~~ys~ksDIWS  308 (666)
                      +.||+|||++|||||||||+|||++. ++.+||+|||+|+.....           .+.|+|||++.+ ..|+.++||||
T Consensus       144 ~~gl~ylH~~~ivHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~-~~~~~~sDiwS  221 (299)
T d1ywna1         144 AKGMEFLASRKCIHRDLAARNILLSE-KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD-RVYTIQSDVWS  221 (299)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECG-GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHH-CCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCcCCcCCccceeECC-CCcEEEccCcchhhccccccccccCceeeCccccchhHhhc-CCCCcccceee
Confidence            99999999999999999999999998 899999999999754322           257999997654 56899999999


Q ss_pred             HHHHHHHHHhC-CCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCC
Q 005985          309 VGFMMAKMVLR-ELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  387 (666)
Q Consensus       309 LGviLyeLltG-~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~R  387 (666)
                      |||++|||++| .+||....           ....+...+..   ...      ++..+.+++++++||.+||+.||++|
T Consensus       222 ~Gvil~ellt~~~~p~~~~~-----------~~~~~~~~~~~---~~~------~~~~~~~~~~l~~li~~cl~~dP~~R  281 (299)
T d1ywna1         222 FGVLLWEIFSLGASPYPGVK-----------IDEEFCRRLKE---GTR------MRAPDYTTPEMYQTMLDCWHGEPSQR  281 (299)
T ss_dssp             HHHHHHHHHTTSCCSSTTCC-----------CSHHHHHHHHH---TCC------CCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             hHHHHHHHHhCCCCCCCCCC-----------HHHHHHHHHhc---CCC------CCCCccCCHHHHHHHHHHcCCChhHC
Confidence            99999999986 56775211           11222222221   111      12335678999999999999999999


Q ss_pred             CCHHHHHcC
Q 005985          388 ISCLDALRH  396 (666)
Q Consensus       388 pTa~elL~H  396 (666)
                      ||++|+++|
T Consensus       282 pt~~eil~~  290 (299)
T d1ywna1         282 PTFSELVEH  290 (299)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999986


No 46 
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.4e-47  Score=391.09  Aligned_cols=240  Identities=15%  Similarity=0.164  Sum_probs=198.2

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-hhHHHHHHHHHHHHHhhhccCCCCCcceEEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-QAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~  163 (666)
                      .++|+++++||+|+||    +||+|+++      +++.||||+++.. ...+++.+|+.++++++      |||||++++
T Consensus         3 ~~~~~~~~~iG~G~fg----~Vy~~~~~------~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~------HpnIv~~~g   66 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFG----VVKYGKWR------GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLS------HEKLVQLYG   66 (258)
T ss_dssp             CCCCCCCCCCCEETTE----EEEEEEET------TTEEEEEEEEESSSSCHHHHHHHHHHHHTCC------CTTBCCEEE
T ss_pred             hHHCEEeEEEecCCCe----EEEEEEEC------CCCEEEEEEECcCcCCHHHHHHHHHHHHhcC------CCceeeEEE
Confidence            3689999999999999    99999986      5789999999853 34567899999999998      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      ++.     +.+.+++||||+++|+|.+++....        ..+++                    ..++.++.||++||
T Consensus        67 ~~~-----~~~~~~iv~Ey~~~g~l~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~gl  113 (258)
T d1k2pa_          67 VCT-----KQRPIFIITEYMANGCLLNYLREMR--------HRFQT--------------------QQLLEMCKDVCEAM  113 (258)
T ss_dssp             EEC-----CSSSEEEEEECCTTEEHHHHHHSGG--------GCCCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEe-----eCCceEEEEEccCCCcHHHhhhccc--------cCCcH--------------------HHHHHHHHHHHHHH
Confidence            998     7788999999999999999987642        13343                    56888999999999


Q ss_pred             HHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC----------CCccCcccccCcCCCCchhHHHHHHHHH
Q 005985          244 NYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG----------PNNSSPDSNMDRRQMMIAFDMRCVGFMM  313 (666)
Q Consensus       244 ~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~----------~~Y~APEvl~~~~~ys~ksDIWSLGviL  313 (666)
                      +|||++||+||||||+|||++. ++.+||+|||+|+......          +.|+|||++.+ ..|+.++|||||||++
T Consensus       114 ~~LH~~~iiH~dlk~~Nill~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~ksDiwS~G~~l  191 (258)
T d1k2pa_         114 EYLESKQFLHRDLAARNCLVND-QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY-SKFSSKSDIWAFGVLM  191 (258)
T ss_dssp             HHHHHTTBCCSCCSGGGEEECT-TCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHH-CCCCHHHHHHHHHHHH
T ss_pred             HHHhhcCcccccccceeEEEcC-CCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcC-CCCCcceeecccchhh
Confidence            9999999999999999999998 8999999999997654322          46999996654 4589999999999999


Q ss_pred             HHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHH
Q 005985          314 AKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  392 (666)
Q Consensus       314 yeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~e  392 (666)
                      |||+| |+.||..            ....++...   +.....      .+.....++++.+||.+||+.||++|||+++
T Consensus       192 ~el~t~g~~Pf~~------------~~~~~~~~~---i~~~~~------~~~p~~~~~~l~~li~~cl~~dP~~RPt~~e  250 (258)
T d1k2pa_         192 WEIYSLGKMPYER------------FTNSETAEH---IAQGLR------LYRPHLASEKVYTIMYSCWHEKADERPTFKI  250 (258)
T ss_dssp             HHHHTTSCCTTTT------------SCHHHHHHH---HHTTCC------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             HhHHhcCCCCCCC------------CCHHHHHHH---HHhCCC------CCCcccccHHHHHHHHHHccCCHhHCcCHHH
Confidence            99998 8999852            222222222   222111      1223467889999999999999999999999


Q ss_pred             HHcC
Q 005985          393 ALRH  396 (666)
Q Consensus       393 lL~H  396 (666)
                      +++|
T Consensus       251 il~~  254 (258)
T d1k2pa_         251 LLSN  254 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9987


No 47 
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.7e-47  Score=394.43  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=201.1

Q ss_pred             ccccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-hHHHHHHHHHHHHHhhhccCCCCCcc
Q 005985           80 VIRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYS  158 (666)
Q Consensus        80 ~~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (666)
                      .+++..++|++++.||+|+||    +||+|+++.      ++.||||+++... ..+.+.+|+.+|++++      ||||
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg----~Vy~~~~~~------~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~------h~nI   74 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFG----EVWMGTWNG------TTRVAIKTLKPGTMSPEAFLQEAQVMKKLR------HEKL   74 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSC----EEEEEEETT------TEEEEEEECCTTSSCHHHHHHHHHHHHHCC------CTTB
T ss_pred             ceEcCHHHEEEeeEEeeCCCe----EEEEEEECC------CCEEEEEEECcccCCHHHHHHHHHHHHhcc------cCCE
Confidence            345667899999999999999    999999975      5679999997533 3466899999999998      9999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      |++++++.     + +.+++|||||++|+|.+++....       ...+++                    ..+..++.|
T Consensus        75 v~~~g~~~-----~-~~~~lv~Ey~~~g~l~~~~~~~~-------~~~l~~--------------------~~~~~i~~~  121 (285)
T d1fmka3          75 VQLYAVVS-----E-EPIYIVTEYMSKGSLLDFLKGET-------GKYLRL--------------------PQLVDMAAQ  121 (285)
T ss_dssp             CCEEEEEC-----S-SSCEEEECCCTTCBHHHHHSHHH-------HTTCCH--------------------HHHHHHHHH
T ss_pred             eEEEEEEe-----c-CCeEEEEEecCCCchhhhhhhcc-------cccchH--------------------HHHHHHHHH
Confidence            99999986     3 34789999999999999987531       113444                    668999999


Q ss_pred             HHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC----------CCCccCcccccCcCCCCchhHHHH
Q 005985          239 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRC  308 (666)
Q Consensus       239 Il~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~----------~~~Y~APEvl~~~~~ys~ksDIWS  308 (666)
                      |+.||+|||++||+||||||+||||+. ++.+||+|||+|+.....          .+.|+|||++. ...++.++||||
T Consensus       122 i~~gl~~LH~~~ivH~DlKp~NIll~~-~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksDI~S  199 (285)
T d1fmka3         122 IASGMAYVERMNYVHRDLRAANILVGE-NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL-YGRFTIKSDVWS  199 (285)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCCTTC--------------CCGGGSCHHHHH-HCCCCHHHHHHH
T ss_pred             HHHHHHHHhhhheecccccceEEEECC-CCcEEEcccchhhhccCCCceeeccccccccccChHHHh-CCCCCcHHhhhc
Confidence            999999999999999999999999998 899999999999765322          25799999765 456899999999


Q ss_pred             HHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC
Q 005985          309 VGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  388 (666)
Q Consensus       309 LGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp  388 (666)
                      |||++|||++|..||.           .+....+....+   ....      ..+..+.+++++++||.+||+.||++||
T Consensus       200 ~Giil~el~t~~~p~~-----------~~~~~~~~~~~i---~~~~------~~~~~~~~~~~l~~li~~cl~~dP~~Rp  259 (285)
T d1fmka3         200 FGILLTELTTKGRVPY-----------PGMVNREVLDQV---ERGY------RMPCPPECPESLHDLMCQCWRKEPEERP  259 (285)
T ss_dssp             HHHHHHHHHTTTCCSS-----------TTCCHHHHHHHH---HTTC------CCCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             chHHHHHHHhCCCCCC-----------CCCCHHHHHHHH---HhcC------CCCCCcccCHHHHHHHHHHcccCHhHCc
Confidence            9999999999654442           122222222222   2111      1233457889999999999999999999


Q ss_pred             CHHHHHc--CCCCCCCC
Q 005985          389 SCLDALR--HPFLCGPR  403 (666)
Q Consensus       389 Ta~elL~--HPwf~~~~  403 (666)
                      |++++++  |+||+...
T Consensus       260 s~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         260 TFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             CHHHHHHHHHTTTSCSC
T ss_pred             CHHHHHHHHhhhhcCCC
Confidence            9999988  99998765


No 48 
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.8e-47  Score=390.25  Aligned_cols=245  Identities=15%  Similarity=0.152  Sum_probs=190.5

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      +..++|++++.||+|+||    .||+|++...+.  .+..||||.++..   ...+.+.+|+.+|++++      |||||
T Consensus         4 i~~~~~~l~~~iG~G~fg----~Vy~a~~~~~~~--~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv   71 (273)
T d1mp8a_           4 IQRERIELGRCIGEGQFG----DVHQGIYMSPEN--PALAVAIKTCKNCTSDSVREKFLQEALTMRQFD------HPHIV   71 (273)
T ss_dssp             CCGGGEEEEEEEEECSSS----EEEEEEECCC----CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCC------CTTBC
T ss_pred             cCHHHeEEEEEEeeCCCc----EEEEEEEecCCc--eeEEEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCCEe
Confidence            445799999999999999    999999875211  3567999998742   23356789999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     + +.+|+|||||++|+|.+++....        ..+++                    ..++.++.||
T Consensus        72 ~l~~~~~-----~-~~~~iv~E~~~~g~l~~~~~~~~--------~~l~~--------------------~~~~~~~~qi  117 (273)
T d1mp8a_          72 KLIGVIT-----E-NPVWIIMELCTLGELRSFLQVRK--------YSLDL--------------------ASLILYAYQL  117 (273)
T ss_dssp             CEEEEEC-----S-SSCEEEEECCTTEEHHHHHHHTT--------TTSCH--------------------HHHHHHHHHH
T ss_pred             eEEEEEe-----c-CeEEEEEEeccCCcHHhhhhccC--------CCCCH--------------------HHHHHHHHHH
Confidence            9999986     3 56899999999999999987642        13444                    5688999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC----------CCCccCcccccCcCCCCchhHHHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED----------GPNNSSPDSNMDRRQMMIAFDMRCV  309 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~----------~~~Y~APEvl~~~~~ys~ksDIWSL  309 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.....          .+.|+|||++. ...|+.++|||||
T Consensus       118 ~~gl~ylH~~~iiHrDlKp~NIll~~-~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~-~~~~~~~~DiwSl  195 (273)
T d1mp8a_         118 STALAYLESKRFVHRDIAARNVLVSS-NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESIN-FRRFTSASDVWMF  195 (273)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEEEE-TTEEEECC-------------------CCGGGCCHHHHH-HCCCSHHHHHHHH
T ss_pred             HHHhhhhcccCeeccccchhheeecC-CCcEEEccchhheeccCCcceeccceecCcccchhhHhc-cCCCCCccccccc
Confidence            99999999999999999999999998 899999999999865432          25799999665 4569999999999


Q ss_pred             HHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCC
Q 005985          310 GFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRI  388 (666)
Q Consensus       310 GviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~Rp  388 (666)
                      ||++|||++ |.+||..            .....+...+   ....      ..+..+.+++++.+||.+||+.||++||
T Consensus       196 Gvil~e~lt~g~~P~~~------------~~~~~~~~~i---~~~~------~~~~~~~~~~~~~~li~~cl~~dp~~Rp  254 (273)
T d1mp8a_         196 GVCMWEILMHGVKPFQG------------VKNNDVIGRI---ENGE------RLPMPPNCPPTLYSLMTKCWAYDPSRRP  254 (273)
T ss_dssp             HHHHHHHHTTSCCTTTT------------CCGGGHHHHH---HTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             hHHHHHHHhcCCCCCCC------------CCHHHHHHHH---HcCC------CCCCCCCCCHHHHHHHHHHcCCCHhHCc
Confidence            999999998 8999852            2222222222   2211      1234467899999999999999999999


Q ss_pred             CHHHHHcC
Q 005985          389 SCLDALRH  396 (666)
Q Consensus       389 Ta~elL~H  396 (666)
                      |++|+++|
T Consensus       255 s~~ei~~~  262 (273)
T d1mp8a_         255 RFTELKAQ  262 (273)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999875


No 49 
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.2e-47  Score=387.93  Aligned_cols=244  Identities=18%  Similarity=0.196  Sum_probs=194.2

Q ss_pred             ccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        82 ~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      ++.+++|++++.||+|+||    .||+|+++       +..||||+++.....+.+.+|+++|++++      |||||++
T Consensus         3 ~i~~~~~~~~~~lG~G~fg----~Vy~~~~~-------~~~vAvK~i~~~~~~~~~~~E~~~l~~l~------HpnIv~~   65 (262)
T d1byga_           3 ALNMKELKLLQTIGKGEFG----DVMLGDYR-------GNKVAVKCIKNDATAQAFLAEASVMTQLR------HSNLVQL   65 (262)
T ss_dssp             BCCGGGEEEEEEEEECSSC----EEEEEEET-------TEEEEEEECCCCC--HHHHHTHHHHTTCC------CTTBCCE
T ss_pred             ccCHHHeEEeEEEecCCCe----EEEEEEEC-------CeEEEEEEECcHHHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            4677899999999999999    99999974       57899999988777788899999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.+    +.+.+||||||+++|+|.+++..++       ...+++                    ..+..++.||+.
T Consensus        66 ~g~~~~----~~~~~~lv~ey~~~g~L~~~l~~~~-------~~~l~~--------------------~~~~~i~~~i~~  114 (262)
T d1byga_          66 LGVIVE----EKGGLYIVTEYMAKGSLVDYLRSRG-------RSVLGG--------------------DCLLKFSLDVCE  114 (262)
T ss_dssp             EEEECC----C--CCEEEECCCTTEEHHHHHHHHH-------HHHCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEEEe----cCCcEEEEEeccCCCCHHHHHHhcC-------CCCCCH--------------------HHHHHHHHHHHh
Confidence            999862    4566899999999999999997642       112443                    568899999999


Q ss_pred             HHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC------CCccCcccccCcCCCCchhHHHHHHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDMRCVGFMMAK  315 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~------~~Y~APEvl~~~~~ys~ksDIWSLGviLye  315 (666)
                      ||+|||+++|+||||||+|||++. ++.+||+|||+++......      ..|+|||++.+ ..|+.++|||||||++||
T Consensus       115 al~ylH~~~ivH~dlkp~Nil~~~-~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~-~~~t~~sDIwSfG~il~e  192 (262)
T d1byga_         115 AMEYLEGNNFVHRDLAARNVLVSE-DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE-KKFSTKSDVWSFGILLWE  192 (262)
T ss_dssp             HHHHHHHTTCCCSCCSGGGEEECT-TSCEEECCCCC------------CCTTTSCHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_pred             hccccccCceeccccchHhheecC-CCCEeecccccceecCCCCccccccccCCChHHHhC-CCCChHHHHHhHHHHHHH
Confidence            999999999999999999999998 9999999999998654332      68999997665 468999999999999999


Q ss_pred             HHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHH
Q 005985          316 MVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLDAL  394 (666)
Q Consensus       316 Llt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL  394 (666)
                      |+| |++||..            .+..++...+   ....      ..+..+.+++++++||.+||..||++|||+.+++
T Consensus       193 l~t~~~~p~~~------------~~~~~~~~~i---~~~~------~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~  251 (262)
T d1byga_         193 IYSFGRVPYPR------------IPLKDVVPRV---EKGY------KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLR  251 (262)
T ss_dssp             HHTTSCCSCTT------------SCGGGHHHHH---TTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             HHHCCCCCCCC------------CCHHHHHHHH---HcCC------CCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHH
Confidence            998 7888752            2222222222   2111      1233456789999999999999999999999998


Q ss_pred             cC
Q 005985          395 RH  396 (666)
Q Consensus       395 ~H  396 (666)
                      ++
T Consensus       252 ~~  253 (262)
T d1byga_         252 EQ  253 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            73


No 50 
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.1e-46  Score=384.82  Aligned_cols=247  Identities=14%  Similarity=0.171  Sum_probs=190.9

Q ss_pred             cccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           83 FNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        83 ~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      +..+.|++.+.||+|+||    .||+|.++..+. .....||||+++..   .....+.+|+++|++++      |||||
T Consensus         4 i~~~~~~~~~~iG~G~fG----~Vy~~~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~------H~nIv   72 (283)
T d1mqba_           4 IHPSCVTRQKVIGAGEFG----EVYKGMLKTSSG-KKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS------HHNII   72 (283)
T ss_dssp             CCTTTEEEEEEEEECSSS----EEEEEEEEC----CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCC------CTTBC
T ss_pred             CCHHHeEeeeEEeeCCCe----EEEEEEEeCCCC-EEEEEEEEEEECcccChHHHHHHHHHHHHHHhcC------CCCEe
Confidence            445789999999999999    999999886211 12357999999743   23345689999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     +.+.+++|||||.+|+|.+++....        ..+++                    ..+..++.||
T Consensus        73 ~~~g~~~-----~~~~~~~v~e~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~~i  119 (283)
T d1mqba_          73 RLEGVIS-----KYKPMMIITEYMENGALDKFLREKD--------GEFSV--------------------LQLVGMLRGI  119 (283)
T ss_dssp             CEEEEEC-----SSSSEEEEEECCTTEEHHHHHHHTT--------TCSCH--------------------HHHHHHHHHH
T ss_pred             eeeEEEe-----cCCceEEEEEecccCcchhhhhccc--------ccccH--------------------HHHHHHHHHH
Confidence            9999998     7788999999999999999887642        13443                    5688899999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC------------CCCccCcccccCcCCCCchhHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED------------GPNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~------------~~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+.....            .+.|+|||++.+ ..|+.++|||
T Consensus       120 ~~gl~~lH~~~iiHrDlKp~NILl~~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~-~~~~~~sDI~  197 (283)
T d1mqba_         120 AAGMKYLANMNYVHRDLAARNILVNS-NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISY-RKFTSASDVW  197 (283)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECT-TCCEEECCCCC-----------------CCCGGGSCHHHHHS-CCCCHHHHHH
T ss_pred             HHhhhhccccccccCccccceEEECC-CCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHcc-CCCCCccccc
Confidence            99999999999999999999999998 999999999999865332            246999997654 5699999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCC
Q 005985          308 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  387 (666)
Q Consensus       308 SLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~R  387 (666)
                      ||||++|||++|..||.           .+....++...+   .....      .+....+++++.+||.+||+.||++|
T Consensus       198 S~Gvil~el~t~~~~~~-----------~~~~~~~~~~~i---~~~~~------~~~~~~~~~~l~~li~~cl~~~p~~R  257 (283)
T d1mqba_         198 SFGIVMWEVMTYGERPY-----------WELSNHEVMKAI---NDGFR------LPTPMDCPSAIYQLMMQCWQQERARR  257 (283)
T ss_dssp             HHHHHHHHHHTTSCCTT-----------TTCCHHHHHHHH---HTTCC------CCCCTTCBHHHHHHHHHHTCSSTTTS
T ss_pred             ccHHHHHHHHhCCCCcc-----------ccCCHHHHHHHH---hccCC------CCCchhhHHHHHHHHHHHCcCCHhHC
Confidence            99999999999655442           122222222222   22111      12334678899999999999999999


Q ss_pred             CCHHHHHc
Q 005985          388 ISCLDALR  395 (666)
Q Consensus       388 pTa~elL~  395 (666)
                      ||+.|+++
T Consensus       258 Pt~~eil~  265 (283)
T d1mqba_         258 PKFADIVS  265 (283)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999976


No 51 
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.1e-46  Score=391.47  Aligned_cols=244  Identities=14%  Similarity=0.131  Sum_probs=195.6

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      -++|++++.||+|+||    +||+|++...+. ....+||+|.++..   ...+.+.+|+.+|++++      |||||++
T Consensus         8 ~~dy~~~~~lG~G~fG----~Vy~~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv~l   76 (317)
T d1xkka_           8 ETEFKKIKVLGSGAFG----TVYKGLWIPEGE-KVKIPVAIKELREATSPKANKEILDEAYVMASVD------NPHVCRL   76 (317)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEECC-----CCEEEEEEEECC----CTHHHHHHHHHHHHHCC------CTTBCCE
T ss_pred             HHHCEEeeEEecCCCe----EEEEEEEcCCCC-EEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCC------CCCEeeE
Confidence            3679999999999999    999999987211 01236899988643   23456799999999998      9999999


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLI  241 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~  241 (666)
                      ++++.     + +..+++|||+.+|+|.+++....        ..+++                    ..+..|+.||+.
T Consensus        77 ~g~~~-----~-~~~~~v~e~~~~~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~qi~~  122 (317)
T d1xkka_          77 LGICL-----T-STVQLITQLMPFGCLLDYVREHK--------DNIGS--------------------QYLLNWCVQIAK  122 (317)
T ss_dssp             EEEEE-----S-SSEEEEEECCTTCBHHHHHHHTS--------SSCCH--------------------HHHHHHHHHHHH
T ss_pred             EEEEe-----c-CCeeEEEEeccCCcccccccccc--------cCCCH--------------------HHHHHHHHHHHH
Confidence            99998     3 35678899999999999988742        23444                    568889999999


Q ss_pred             HHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----------CCCccCcccccCcCCCCchhHHHHHH
Q 005985          242 GVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMRCVG  310 (666)
Q Consensus       242 aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----------~~~Y~APEvl~~~~~ys~ksDIWSLG  310 (666)
                      ||+|||++||+||||||+|||++. ++.+||+|||+|+.....           .+.|+|||++.+ ..|+.++||||||
T Consensus       123 gl~yLH~~~iiHrDlKp~NIll~~-~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~-~~~~~~sDvwS~G  200 (317)
T d1xkka_         123 GMNYLEDRRLVHRDLAARNVLVKT-PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH-RIYTHQSDVWSYG  200 (317)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEEEE-TTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHH-CCCCHHHHHHHHH
T ss_pred             HHHHHHHcCcccCcchhhcceeCC-CCCeEeeccccceecccccccccccccccCccccChHHHhc-CCCChhhhhhhHH
Confidence            999999999999999999999998 999999999999865432           268999997655 4699999999999


Q ss_pred             HHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCC
Q 005985          311 FMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRIS  389 (666)
Q Consensus       311 viLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpT  389 (666)
                      |++|||+| |.+||.            +.+..++...+....         .++..+.+++++.+||.+||..||++|||
T Consensus       201 vil~el~t~g~~p~~------------~~~~~~~~~~i~~~~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs  259 (317)
T d1xkka_         201 VTVWELMTFGSKPYD------------GIPASEISSILEKGE---------RLPQPPICTIDVYMIMVKCWMIDADSRPK  259 (317)
T ss_dssp             HHHHHHHTTSCCTTT------------TSCGGGHHHHHHHTC---------CCCCCTTBCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HHHHHHHHCCCCCCC------------CCCHHHHHHHHHcCC---------CCCCCcccCHHHHHHHHHhCCCChhhCcC
Confidence            99999998 788885            223333333332211         11233567899999999999999999999


Q ss_pred             HHHHHcC
Q 005985          390 CLDALRH  396 (666)
Q Consensus       390 a~elL~H  396 (666)
                      +.|+++|
T Consensus       260 ~~eil~~  266 (317)
T d1xkka_         260 FRELIIE  266 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999987


No 52 
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=4.9e-46  Score=389.32  Aligned_cols=271  Identities=15%  Similarity=0.136  Sum_probs=204.3

Q ss_pred             ccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCcc
Q 005985           82 RFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSYS  158 (666)
Q Consensus        82 ~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~HpnI  158 (666)
                      ++..++|++++.||+|+||    +||+|+.+......+++.||||+++..   ...+++.+|+++|++++      ||||
T Consensus         9 e~p~~~~~~~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~------h~ni   78 (301)
T d1lufa_           9 EYPRNNIEYVRDIGEGAFG----RVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD------NPNI   78 (301)
T ss_dssp             BCCGGGCEEEEEEEECSSC----EEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC------CTTB
T ss_pred             cCCHHHcEEeEEEeeCCCe----EEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcC------CCCc
Confidence            4556789999999999999    999999875444447789999999743   23456799999999998      9999


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      +++++++.     ..+..++||||+++|+|.+++.............     ................++...+..|+.|
T Consensus        79 v~~~~~~~-----~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~i~~q  148 (301)
T d1lufa_          79 VKLLGVCA-----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSH-----SDLSTRARVSSPGPPPLSCAEQLCIARQ  148 (301)
T ss_dssp             CCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHHTCC---------------------------CCCCHHHHHHHHHH
T ss_pred             ccceeeec-----cCCceEEEEEecCCCcHHHHHHhcCccccccccc-----cccchhhhccccCCCCCCHHHHHHHHHH
Confidence            99999998     7788999999999999999998754211100000     0000001112223345777889999999


Q ss_pred             HHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----------CCCccCcccccCcCCCCchhHHH
Q 005985          239 LLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       239 Il~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----------~~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      |+.||+|||++|||||||||+|||++. ++.+||+|||+|+.....           .+.|+|||.+. ...|+.++|||
T Consensus       149 i~~gl~ylH~~~ivHrDlKp~NILld~-~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~t~ksDVw  226 (301)
T d1lufa_         149 VAAGMAYLSERKFVHRDLATRNCLVGE-NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF-YNRYTTESDVW  226 (301)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEECG-GGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH-HCCCCHHHHHH
T ss_pred             HHHHhhhcccCCeEeeEEcccceEECC-CCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc-cCCCChhhhhc
Confidence            999999999999999999999999998 899999999999754322           15799999665 45699999999


Q ss_pred             HHHHHHHHHHhCC-CCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          308 CVGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       308 SLGviLyeLltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      ||||++|||++|. +||.            +.+..+....   +.....      .+....+++++.+||.+||+.||++
T Consensus       227 S~Gvvl~ell~~~~~p~~------------~~~~~e~~~~---v~~~~~------~~~p~~~~~~~~~li~~cl~~~P~~  285 (301)
T d1lufa_         227 AYGVVLWEIFSYGLQPYY------------GMAHEEVIYY---VRDGNI------LACPENCPLELYNLMRLCWSKLPAD  285 (301)
T ss_dssp             HHHHHHHHHHTTTCCTTT------------TSCHHHHHHH---HHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cchhhHHHHHccCCCCCC------------CCCHHHHHHH---HHcCCC------CCCCccchHHHHHHHHHHcCCChhH
Confidence            9999999999985 6774            2223222222   222211      1234568899999999999999999


Q ss_pred             CCCHHHHHc
Q 005985          387 RISCLDALR  395 (666)
Q Consensus       387 RpTa~elL~  395 (666)
                      |||+.|+++
T Consensus       286 RPt~~ev~~  294 (301)
T d1lufa_         286 RPSFCSIHR  294 (301)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999965


No 53 
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.1e-45  Score=384.26  Aligned_cols=265  Identities=16%  Similarity=0.129  Sum_probs=198.8

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCC--CCCcEEEEEEecchh---hHHHHHHHHHHHHHhhhccCCCC
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP--LHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYH  155 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~--~t~~~VAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~H  155 (666)
                      ..+..++|++++.||+|+||    .||+|++...++.  .++..||||+++...   ...+..+|+.++.++.     .|
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg----~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~-----~H   78 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFG----QVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KH   78 (299)
T ss_dssp             TBCCGGGEEEEEECC---------CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CcccHHHeEEeeEEeecCCc----EEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhc-----CC
Confidence            34556899999999999999    9999998763221  234589999997532   3355688999999995     49


Q ss_pred             CcceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHH
Q 005985          156 SYSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  235 (666)
Q Consensus       156 pnIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i  235 (666)
                      ||||++++++.     +++.+++|||||++|+|.++|..+.......             .......+...++...+..+
T Consensus        79 pnIv~~~~~~~-----~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~  140 (299)
T d1fgka_          79 KNIINLLGACT-----QDGPLYVIVEYASKGNLREYLQARRPPGLEY-------------SYNPSHNPEEQLSSKDLVSC  140 (299)
T ss_dssp             TTBCCEEEEEC-----SSSSCEEEECCCTTCBHHHHHHTTSCC-------------------------CCCCCHHHHHHH
T ss_pred             CeEEecccccc-----cCCeEEEEEEccCCCcHHHHHHhhcCCcccc-------------ccccccCccccCCHHHHHHH
Confidence            99999999998     7788999999999999999998754211100             00011223345667889999


Q ss_pred             HHHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC-----------CCccCcccccCcCCCCchh
Q 005985          236 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAF  304 (666)
Q Consensus       236 ~~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~-----------~~Y~APEvl~~~~~ys~ks  304 (666)
                      +.||+.||+|||++|||||||||+|||++. ++.+||+|||+++......           +.|+|||.+.+ ..|+.++
T Consensus       141 ~~qi~~al~ylH~~~ivHrDiKp~NiLl~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~-~~y~~k~  218 (299)
T d1fgka_         141 AYQVARGMEYLASKKCIHRDLAARNVLVTE-DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD-RIYTHQS  218 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECT-TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHH-CCCCHHH
T ss_pred             HHHHHHHHHHhhhCCEEeeeecccceeecC-CCCeEeccchhhccccccccccccccCCCChhhhhhhHhcC-CCCCchh
Confidence            999999999999999999999999999998 8999999999998664332           57999997654 5699999


Q ss_pred             HHHHHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcC
Q 005985          305 DMRCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATK  383 (666)
Q Consensus       305 DIWSLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~D  383 (666)
                      |||||||++|||++ |.+||.+            .+...+.+.+.   ....      ++....+++++++||.+||+.|
T Consensus       219 DiwS~Gvvl~ell~~g~~p~~~------------~~~~~~~~~i~---~~~~------~~~p~~~~~~l~~li~~cl~~d  277 (299)
T d1fgka_         219 DVWSFGVLLWEIFTLGGSPYPG------------VPVEELFKLLK---EGHR------MDKPSNCTNELYMMMRDCWHAV  277 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTT------------CCHHHHHHHHH---TTCC------CCCCSSCCHHHHHHHHHHTCSS
T ss_pred             hhHHhHHHHHHhccCCCCCCCC------------CCHHHHHHHHH---cCCC------CCCCccchHHHHHHHHHHccCC
Confidence            99999999999998 7888852            22222222221   1111      1233567899999999999999


Q ss_pred             cCCCCCHHHHHc
Q 005985          384 PSKRISCLDALR  395 (666)
Q Consensus       384 P~~RpTa~elL~  395 (666)
                      |++|||+.|+++
T Consensus       278 P~~Rps~~eil~  289 (299)
T d1fgka_         278 PSQRPTFKQLVE  289 (299)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             HhHCcCHHHHHH
Confidence            999999999986


No 54 
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.3e-45  Score=384.82  Aligned_cols=268  Identities=14%  Similarity=0.113  Sum_probs=205.8

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      .++..++|++++.||+|+||    .||+|++....+..+++.||||+++..   .....+.+|+.+++++.     +|||
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg----~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~-----~Hpn   88 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFG----KVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHMN   88 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSE----EEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTT
T ss_pred             ccCCHHHeEEeeEEeecCCe----EEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhcc-----CCCC
Confidence            44556899999999999999    999999875444457899999999753   23345689999999995     4999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||++++++.     +...+|||||||++|+|.+++...........           ............+++..+..++.
T Consensus        89 Iv~~~g~~~-----~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~  152 (311)
T d1t46a_          89 IVNLLGACT-----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSK-----------TSPAIMEDDELALDLEDLLSFSY  152 (311)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEECCTTEEHHHHHHHTTTTC-------------------------CCCCHHHHHHHHH
T ss_pred             EEEEEEEEe-----eCCEEEEEEEcCCCCCHHHHHHhccccccccc-----------cccccccccccCCCHHHHHHHHH
Confidence            999999998     67889999999999999999987542111000           00001112334567788999999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC-----------CCccCcccccCcCCCCchhHH
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG-----------PNNSSPDSNMDRRQMMIAFDM  306 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~-----------~~Y~APEvl~~~~~ys~ksDI  306 (666)
                      ||+.||+|||++|||||||||+|||++. ++.+||+|||+++......           +.|+|||++. ...++.++||
T Consensus       153 qi~~gl~~LH~~~ivHrDLKp~NIl~~~-~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DI  230 (311)
T d1t46a_         153 QVAKGMAFLASKNCIHRDLAARNILLTH-GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF-NCVYTFESDV  230 (311)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEEET-TTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHHhCCeeecccccccccccc-cCcccccccchheeccCCCcceEeeecccChHHcCHHHhc-CCCCCCcccc
Confidence            9999999999999999999999999998 8999999999998765432           5799999765 4568999999


Q ss_pred             HHHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcC
Q 005985          307 RCVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  385 (666)
Q Consensus       307 WSLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~  385 (666)
                      |||||++|||+| |.+||...           .....+...+......         .....+++++.+||.+||++||+
T Consensus       231 wS~G~~l~ellt~g~p~~~~~-----------~~~~~~~~~i~~~~~~---------~~~~~~~~~l~~Li~~cl~~dP~  290 (311)
T d1t46a_         231 WSYGIFLWELFSLGSSPYPGM-----------PVDSKFYKMIKEGFRM---------LSPEHAPAEMYDIMKTCWDADPL  290 (311)
T ss_dssp             HHHHHHHHHHHTTTCCSSTTC-----------CSSHHHHHHHHHTCCC---------CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             cchHHHHHHHHhCCCCCCCCC-----------CHHHHHHHHHhcCCCC---------CCcccccHHHHHHHHHHcCCChh
Confidence            999999999998 66665421           1122233333222111         12245788999999999999999


Q ss_pred             CCCCHHHHHc
Q 005985          386 KRISCLDALR  395 (666)
Q Consensus       386 ~RpTa~elL~  395 (666)
                      +|||++|+++
T Consensus       291 ~RPs~~~il~  300 (311)
T d1t46a_         291 KRPTFKQIVQ  300 (311)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999986


No 55 
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-45  Score=386.38  Aligned_cols=261  Identities=18%  Similarity=0.155  Sum_probs=201.8

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCc--EEEEEEecch---hhHHHHHHHHHHHHHhhhccCCCC
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNT--KVVLRQLISV---QAQRRGRRAIEVLKKLVRRRLMYH  155 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~--~VAvK~i~~~---~~~~~~~rEi~iL~~L~~~~~~~H  155 (666)
                      +.+..++|++.+.||+|+||    +||+|+++.     ++.  .||||++...   ...+.+.+|+++|+++.     +|
T Consensus         5 ~~i~~~~~~~~~~iG~G~fg----~Vy~~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~H   70 (309)
T d1fvra_           5 PVLDWNDIKFQDVIGEGNFG----QVLKARIKK-----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HH   70 (309)
T ss_dssp             SBCCGGGCEEEEEEECGGGC----EEEEEEEEE-----TTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----CC
T ss_pred             CccCHHHcEEEEEEeeCCCc----EEEEEEECC-----CCeEEEEEEEEECcccChHHHHHHHHHHHHHHhcc-----CC
Confidence            44567899999999999999    999999987     565  4788887632   23346789999999984     39


Q ss_pred             CcceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHH
Q 005985          156 SYSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLL  235 (666)
Q Consensus       156 pnIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i  235 (666)
                      ||||++++++.     +++.+|||||||++|+|.++|........       .....      ........++...+..+
T Consensus        71 pnIv~~~~~~~-----~~~~~~iV~ey~~~g~L~~~l~~~~~~~~-------~~~~~------~~~~~~~~l~~~~~~~~  132 (309)
T d1fvra_          71 PNIINLLGACE-----HRGYLYLAIEYAPHGNLLDFLRKSRVLET-------DPAFA------IANSTASTLSSQQLLHF  132 (309)
T ss_dssp             TTBCCEEEEEE-----ETTEEEEEECCCTTCBHHHHHHTTCHHHH-------CHHHH------HHTTBSCSSCHHHHHHH
T ss_pred             CCEeeEEEEEe-----cCCeeEEEEEecCCCcHHHHHhhcccccc-------chhhh------ccccccCCCCHHHHHHH
Confidence            99999999999     77899999999999999999987531110       00000      00112234566889999


Q ss_pred             HHHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCC--------CCCCccCcccccCcCCCCchhHHH
Q 005985          236 MRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYE--------DGPNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       236 ~~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~--------~~~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      +.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+....        ....|+|||.+.+ ..|+.++|||
T Consensus       133 ~~qia~gl~~lH~~~iiHrDlkp~NIL~~~-~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDvw  210 (309)
T d1fvra_         133 AADVARGMDYLSQKQFIHRDLAARNILVGE-NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNY-SVYTTNSDVW  210 (309)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEECG-GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHH-CEECHHHHHH
T ss_pred             HHHHHHHHHhhhcCCccccccccceEEEcC-CCceEEccccccccccccccccceecCCcccchHHhcc-CCCCccceee
Confidence            999999999999999999999999999998 89999999999975432        2368999997654 4589999999


Q ss_pred             HHHHHHHHHHhCC-CCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          308 CVGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       308 SLGviLyeLltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      ||||++|||++|. +||.            +.+...+   +..+....      .++....+++++++||.+||+.||++
T Consensus       211 SfGvil~ell~~~~~p~~------------~~~~~~~---~~~i~~~~------~~~~~~~~~~~~~~li~~cl~~dP~~  269 (309)
T d1fvra_         211 SYGVLLWEIVSLGGTPYC------------GMTCAEL---YEKLPQGY------RLEKPLNCDDEVYDLMRQCWREKPYE  269 (309)
T ss_dssp             HHHHHHHHHHTTSCCTTT------------TCCHHHH---HHHGGGTC------CCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             hhHHHHHHHHhcCCCCCC------------CCCHHHH---HHHHHhcC------CCCCCccCCHHHHHHHHHHcCCChhH
Confidence            9999999999965 5664            2222222   22222221      12334567899999999999999999


Q ss_pred             CCCHHHHHcC
Q 005985          387 RISCLDALRH  396 (666)
Q Consensus       387 RpTa~elL~H  396 (666)
                      |||++|+++|
T Consensus       270 RPs~~eil~~  279 (309)
T d1fvra_         270 RPSFAQILVS  279 (309)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999999986


No 56 
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.9e-45  Score=377.48  Aligned_cols=243  Identities=17%  Similarity=0.149  Sum_probs=188.4

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch-----hhHHHHHHHHHHHHHhhhccCCCCCcce
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV-----QAQRRGRRAIEVLKKLVRRRLMYHSYSM  159 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~-----~~~~~~~rEi~iL~~L~~~~~~~HpnIV  159 (666)
                      .++|++++.||+|+||    .||+|++....  .....||||++++.     ...+++.+|+.+|++++      |||||
T Consensus         7 ~~d~~~~~~iG~G~fg----~Vy~~~~~~~~--~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~------H~nIv   74 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFG----VVRRGEWDAPS--GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD------HRNLI   74 (273)
T ss_dssp             GGGEEEEEECC----C----CCEEEEEECTT--SCEEEEEEEC--------CHHHHHHHHHHHHHHHCC------CTTBC
T ss_pred             hHHeEEEEEEecCCCe----EEEEEEEECCC--CcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCC------CCCEE
Confidence            4689999999999999    99999976521  12347999998742     23356799999999998      99999


Q ss_pred             EEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHH
Q 005985          160 QVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDL  239 (666)
Q Consensus       160 kl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QI  239 (666)
                      ++++++.     + ..+++|||||++|+|.+++..+.        ..+++                    ..+..++.||
T Consensus        75 ~~~g~~~-----~-~~~~lv~e~~~~~~l~~~~~~~~--------~~l~~--------------------~~~~~~~~qi  120 (273)
T d1u46a_          75 RLYGVVL-----T-PPMKMVTELAPLGSLLDRLRKHQ--------GHFLL--------------------GTLSRYAVQV  120 (273)
T ss_dssp             CEEEEEC-----S-SSCEEEEECCTTCBHHHHHHHHG--------GGSCH--------------------HHHHHHHHHH
T ss_pred             EEEEEEe-----e-cchheeeeeecCcchhhhhhccc--------CCCCH--------------------HHHHHHHHHH
Confidence            9999997     3 35789999999999999887642        23444                    6688999999


Q ss_pred             HHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCC------------CCccCcccccCcCCCCchhHHH
Q 005985          240 LIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG------------PNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       240 l~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~------------~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      +.||+|||++||+||||||+|||++. ++.+||+|||+|+......            ..|+|||++.+ ..|+.++|||
T Consensus       121 ~~gl~ylH~~~iiHrDikp~NIll~~-~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~  198 (273)
T d1u46a_         121 AEGMGYLESKRFIHRDLAARNLLLAT-RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKT-RTFSHASDTW  198 (273)
T ss_dssp             HHHHHHHHHTTEECSCCCGGGEEEEE-TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHH-CEEEHHHHHH
T ss_pred             HHHHHHhhhCCEeeeeecHHHhcccc-ccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhC-CCCCcchhhh
Confidence            99999999999999999999999998 8999999999998764432            46899997654 5689999999


Q ss_pred             HHHHHHHHHHh-CCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCC
Q 005985          308 CVGFMMAKMVL-RELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSK  386 (666)
Q Consensus       308 SLGviLyeLlt-G~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~  386 (666)
                      ||||++|||+| |++||.+            .+..   +.+..+....     ..++..+.+++++++||.+||..||++
T Consensus       199 S~Gvil~emlt~G~~Pf~~------------~~~~---~~~~~i~~~~-----~~~~~~~~~~~~l~~li~~cl~~dp~~  258 (273)
T d1u46a_         199 MFGVTLWEMFTYGQEPWIG------------LNGS---QILHKIDKEG-----ERLPRPEDCPQDIYNVMVQCWAHKPED  258 (273)
T ss_dssp             HHHHHHHHHHTTSCCTTTT------------CCHH---HHHHHHHTSC-----CCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hhHHHHHHHHhCCCCCCCC------------cCHH---HHHHHHHhCC-----CCCCCcccccHHHHHHHHHHcCCChhH
Confidence            99999999998 8999862            2222   2222222221     122344678899999999999999999


Q ss_pred             CCCHHHHHc
Q 005985          387 RISCLDALR  395 (666)
Q Consensus       387 RpTa~elL~  395 (666)
                      |||++|+++
T Consensus       259 RPt~~ei~~  267 (273)
T d1u46a_         259 RPTFVALRD  267 (273)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864


No 57 
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-44  Score=379.72  Aligned_cols=264  Identities=16%  Similarity=0.191  Sum_probs=205.6

Q ss_pred             cccccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh---hHHHHHHHHHHHHHhhhccCCCCCc
Q 005985           81 IRFNMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ---AQRRGRRAIEVLKKLVRRRLMYHSY  157 (666)
Q Consensus        81 ~~~~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~---~~~~~~rEi~iL~~L~~~~~~~Hpn  157 (666)
                      .++..++|+++++||+|+||    +||+|.++......++..||||+++...   ....+.+|++++++++      |||
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG----~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~------h~n   84 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFG----MVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFN------CHH   84 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSS----EEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCC------CTT
T ss_pred             eeecHHHeEEeeEEeeCCCe----EEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcC------CCC
Confidence            34566899999999999999    9999998743333356889999997532   2234689999999997      999


Q ss_pred             ceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHH
Q 005985          158 SMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMR  237 (666)
Q Consensus       158 IVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~  237 (666)
                      ||++++++.     ..+..++|||||.+|+|.+++........        .           ......++...+..++.
T Consensus        85 Iv~~~~~~~-----~~~~~~lv~e~~~~g~l~~~~~~~~~~~~--------~-----------~~~~~~~~~~~~~~i~~  140 (308)
T d1p4oa_          85 VVRLLGVVS-----QGQPTLVIMELMTRGDLKSYLRSLRPAMA--------N-----------NPVLAPPSLSKMIQMAG  140 (308)
T ss_dssp             BCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHHHHHHHH--------H-----------CTTCCCCCHHHHHHHHH
T ss_pred             EeeeeeEEe-----cCCceeEEEeecCCCCHHHHHHhcccccc--------c-----------ccccCCCCHHHHHHHHH
Confidence            999999998     67889999999999999999976421000        0           00112234567889999


Q ss_pred             HHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCC-----------CCCccCcccccCcCCCCchhHH
Q 005985          238 DLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-----------GPNNSSPDSNMDRRQMMIAFDM  306 (666)
Q Consensus       238 QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-----------~~~Y~APEvl~~~~~ys~ksDI  306 (666)
                      ||+.||.|||+++|+||||||+|||++. ++++||+|||+|+.....           .+.|+|||.+. ...|+.++||
T Consensus       141 ~ia~gl~~LH~~~ivHrDlk~~NiLld~-~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~-~~~~~~~~Dv  218 (308)
T d1p4oa_         141 EIADGMAYLNANKFVHRDLAARNCMVAE-DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK-DGVFTTYSDV  218 (308)
T ss_dssp             HHHHHHHHHHHTTCBCSCCSGGGEEECT-TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH-HCCCCHHHHH
T ss_pred             HHHHHHHHHhhCCeeeceEcCCceeecC-CceEEEeecccceeccCCcceeeccceecccccCCHHHHc-cCCCCccccc
Confidence            9999999999999999999999999998 999999999999855432           26799999665 4568999999


Q ss_pred             HHHHHHHHHHHhCC-CCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcC
Q 005985          307 RCVGFMMAKMVLRE-LMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPS  385 (666)
Q Consensus       307 WSLGviLyeLltG~-~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~  385 (666)
                      |||||++|||+||. +||.            +.+..+....   +....      .++..+.+++++.+||.+||+.||+
T Consensus       219 ~S~G~il~El~t~~~~p~~------------~~~~~~~~~~---i~~~~------~~~~p~~~~~~l~~li~~cl~~~P~  277 (308)
T d1p4oa_         219 WSFGVVLWEIATLAEQPYQ------------GLSNEQVLRF---VMEGG------LLDKPDNCPDMLFELMRMCWQYNPK  277 (308)
T ss_dssp             HHHHHHHHHHHHTSCCTTT------------TSCHHHHHHH---HHTTC------CCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccHHHHHHHHHhCCCCCCC------------CCCHHHHHHH---HHhCC------CCCCcccchHHHHHHHHHHcCCChh
Confidence            99999999999984 7764            2222222222   22211      1223456789999999999999999


Q ss_pred             CCCCHHHHHc------CCCCCC
Q 005985          386 KRISCLDALR------HPFLCG  401 (666)
Q Consensus       386 ~RpTa~elL~------HPwf~~  401 (666)
                      +|||++++++      +|+|++
T Consensus       278 ~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         278 MRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             GSCCHHHHHHHHGGGSCTTHHH
T ss_pred             HCcCHHHHHHHHHHhcCCCCcC
Confidence            9999999997      666654


No 58 
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=3.8e-43  Score=366.27  Aligned_cols=252  Identities=10%  Similarity=0.091  Sum_probs=192.6

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~  165 (666)
                      ++|++++.||+|+||    +||+|++..     +++.||||++........+.+|+++++.++     +|++|+.+++++
T Consensus         7 ~rY~l~~~iG~G~fG----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~-----~~~~i~~~~~~~   72 (299)
T d1ckia_           7 NRYRLGRKIGSGSFG----DIYLGTDIA-----AGEEVAIKLECVKTKHPQLHIESKIYKMMQ-----GGVGIPTIRWCG   72 (299)
T ss_dssp             TTEEEEEEEEECSSS----EEEEEEETT-----TTEEEEEEEEESCTTSCCHHHHHHHHHHST-----TSTTCCCEEEEE
T ss_pred             CEEEEeEEEeeCCCc----EEEEEEECC-----CCCEEEEEEEchhccCHHHHHHHHHHHHcc-----CCCcccEEEEEE
Confidence            579999999999999    999999998     899999999886655667889999999998     244556666666


Q ss_pred             eccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 005985          166 SSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  245 (666)
Q Consensus       166 ~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  245 (666)
                      .     +.+..++||||+++ +|.+.+...+        ..+++                    ..+..++.||+.||+|
T Consensus        73 ~-----~~~~~~ivme~~~~-~l~~~~~~~~--------~~~~~--------------------~~~~~~~~qi~~~l~~  118 (299)
T d1ckia_          73 A-----EGDYNVMVMELLGP-SLEDLFNFCS--------RKFSL--------------------KTVLLLADQMISRIEY  118 (299)
T ss_dssp             E-----ETTEEEEEEECCCC-BHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHHHHH
T ss_pred             e-----cCCEEEEEEEEcCC-chhhhhhhcc--------CCCcH--------------------HHHHHHHHHHHHHHHH
Confidence            6     67889999999977 7877776532        13444                    6689999999999999


Q ss_pred             HHhcCccccccccceEEEcc--CCCceEEeeeccccccCC----------------CCCCccCcccccCcCCCCchhHHH
Q 005985          246 LHSHGLAHTELRLENVHISP--VDRHIKVRILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIAFDMR  307 (666)
Q Consensus       246 LHs~gIvHRDLKPeNILi~~--~~g~vKL~DFGlA~~~~~----------------~~~~Y~APEvl~~~~~ys~ksDIW  307 (666)
                      ||++||+||||||+|||++.  .+..+||+|||+|+.+..                +.+.|+|||++.+ ..|+.++|||
T Consensus       119 lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Diw  197 (299)
T d1ckia_         119 IHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLG-IEQSRRDDLE  197 (299)
T ss_dssp             HHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTT-BCCCHHHHHH
T ss_pred             HHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhC-CCCCChhhEE
Confidence            99999999999999999864  246799999999986542                2378999997654 4599999999


Q ss_pred             HHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCC
Q 005985          308 CVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKR  387 (666)
Q Consensus       308 SLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~R  387 (666)
                      ||||++|||++|.+||........        ..............+.      ....+.+++++.+||.+||+.||++|
T Consensus       198 SlG~~l~el~tg~~P~~~~~~~~~--------~~~~~~~~~~~~~~~~------~~~~~~~p~~~~~li~~cl~~~p~~R  263 (299)
T d1ckia_         198 SLGYVLMYFNLGSLPWQGLKAATK--------RQKYERISEKKMSTPI------EVLCKGYPSEFATYLNFCRSLRFDDK  263 (299)
T ss_dssp             HHHHHHHHHHHSSCTTCCCC---------------HHHHHHHHHHSCH------HHHTTTSCHHHHHHHHHHHHSCTTCC
T ss_pred             ecCHHHHHHHhCCCcccccchHHH--------HHHHHHhhcccCCCCh------hHhccCCCHHHHHHHHHHccCChhHC
Confidence            999999999999999963211100        0011111111111110      01234678899999999999999999


Q ss_pred             CCHHH---HHcCCCCC
Q 005985          388 ISCLD---ALRHPFLC  400 (666)
Q Consensus       388 pTa~e---lL~HPwf~  400 (666)
                      |++++   +|+|+|.+
T Consensus       264 P~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         264 PDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            99874   56777654


No 59 
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-43  Score=371.85  Aligned_cols=257  Identities=14%  Similarity=0.121  Sum_probs=184.8

Q ss_pred             CCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHH--HHhhhccCCCCCcceEEEE
Q 005985           86 GDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVL--KKLVRRRLMYHSYSMQVHG  163 (666)
Q Consensus        86 ~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL--~~L~~~~~~~HpnIVkl~~  163 (666)
                      .+|.+.+.||+|+||    .||+|++       +++.||||+++.... +...+|.+++  ..++      |||||++++
T Consensus         3 ~~~~l~~~iG~G~fg----~Vy~~~~-------~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~------HpnIv~~~~   64 (303)
T d1vjya_           3 RTIVLQESIGKGRFG----EVWRGKW-------RGEEVAVKIFSSREE-RSWFREAEIYQTVMLR------HENILGFIA   64 (303)
T ss_dssp             GGEEEEEEEECCSSS----EEEEEEE-------TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCC------CTTBCCEEE
T ss_pred             cEEEEEEEEeeCCCe----EEEEEEE-------CCEEEEEEEECccch-hHHHHHHHHHHHhhCC------CCcCcceEE
Confidence            478999999999999    9999986       478999999975533 3344454444  4555      999999999


Q ss_pred             EEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 005985          164 YVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGV  243 (666)
Q Consensus       164 ~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL  243 (666)
                      ++.... .....+|||||||++|+|.+++++.          .++.                    .....++.|++.||
T Consensus        65 ~~~~~~-~~~~~~~lv~Ey~~~g~L~~~l~~~----------~l~~--------------------~~~~~~~~~ia~gl  113 (303)
T d1vjya_          65 ADNKDN-GTWTQLWLVSDYHEHGSLFDYLNRY----------TVTV--------------------EGMIKLALSTASGL  113 (303)
T ss_dssp             EEEEEC-SSSEEEEEEEECCTTCBHHHHHHHC----------CBCH--------------------HHHHHHHHHHHHHH
T ss_pred             EEEeCC-CcceEEEEEEecccCCCHHHHHhcC----------CCCH--------------------HHHHHHHHHHHHHH
Confidence            997431 1234789999999999999999874          2333                    55788999999999


Q ss_pred             HHHHh--------cCccccccccceEEEccCCCceEEeeeccccccCCC-------------CCCccCcccccCcC----
Q 005985          244 NYLHS--------HGLAHTELRLENVHISPVDRHIKVRILGNAADFYED-------------GPNNSSPDSNMDRR----  298 (666)
Q Consensus       244 ~yLHs--------~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~-------------~~~Y~APEvl~~~~----  298 (666)
                      +|||+        +||+||||||+|||++. ++.+||+|||+++.....             .+.|+|||++.+..    
T Consensus       114 ~~lH~~~~~~~~~~~IvHrDlKp~NILl~~-~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  192 (303)
T d1vjya_         114 AHLHMEIVGTQGKPAIAHRDLKSKNILVKK-NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKH  192 (303)
T ss_dssp             HHHHCCBCSTTCBCEEECSCCCGGGEEECT-TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTC
T ss_pred             HHHHHhhhhhccCCCeeccccCccceEEcC-CCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccC
Confidence            99996        59999999999999998 899999999999865332             37899999765432    


Q ss_pred             -CCCchhHHHHHHHHHHHHHhCCCCChhhhhhhhhcc-cc--CCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHH
Q 005985          299 -QMMIAFDMRCVGFMMAKMVLRELMDPLIFTKFKSFL-TK--GIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWN  374 (666)
Q Consensus       299 -~ys~ksDIWSLGviLyeLltG~~PF~~~~~~~~~~~-~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~d  374 (666)
                       .++.++|||||||+||||+||.+||.........+. ..  ..........   ......................+.+
T Consensus       193 ~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~l~~  269 (303)
T d1vjya_         193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKV---VCEQKLRPNIPNRWQSCEALRVMAK  269 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHH---HTTSCCCCCCCGGGGGCHHHHHHHH
T ss_pred             CCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHH---HhccccCCCCCcccCChHHHHHHHH
Confidence             257799999999999999999988753211111111 11  1111122221   1111110000000111123356899


Q ss_pred             HHHHhhhcCcCCCCCHHHHHc
Q 005985          375 LLSLLLATKPSKRISCLDALR  395 (666)
Q Consensus       375 LL~~mL~~DP~~RpTa~elL~  395 (666)
                      |+.+||+.||++|||+.|+++
T Consensus       270 li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         270 IMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHHHcccCHhHCcCHHHHHH
Confidence            999999999999999999976


No 60 
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.4e-43  Score=369.64  Aligned_cols=242  Identities=13%  Similarity=0.147  Sum_probs=188.4

Q ss_pred             EEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecc---hhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEEE
Q 005985           89 KILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLIS---VQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYV  165 (666)
Q Consensus        89 ~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~---~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~  165 (666)
                      ...++||+|+||    +||+|++....  .+...||||+++.   ....+++.+|+++|++++      |||||++++++
T Consensus        30 ~~~~~iG~G~fg----~Vyk~~~~~~~--~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~------HpnIv~~~g~~   97 (311)
T d1r0pa_          30 HFNEVIGRGHFG----CVYHGTLLDND--GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFS------HPNVLSLLGIC   97 (311)
T ss_dssp             EEEEEEEEETTE----EEEEEEECC------CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCC------CTTBCCCCEEE
T ss_pred             ccceEEeecCCe----EEEEEEEECCC--CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC------CCCEeEEeEEE
Confidence            346889999999    99999987621  1234699999874   233456799999999998      99999999997


Q ss_pred             eccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 005985          166 SSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVNY  245 (666)
Q Consensus       166 ~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~y  245 (666)
                      ..    .++.+++|||||++|+|.+++.....        .+                    +...+..++.||+.||.|
T Consensus        98 ~~----~~~~~~lv~E~~~~g~l~~~~~~~~~--------~~--------------------~~~~~~~i~~qia~gL~~  145 (311)
T d1r0pa_          98 LR----SEGSPLVVLPYMKHGDLRNFIRNETH--------NP--------------------TVKDLIGFGLQVAKGMKF  145 (311)
T ss_dssp             EE----TTTEEEEEEECCTTCBHHHHHHCTTC--------CC--------------------BHHHHHHHHHHHHHHHHH
T ss_pred             Ee----cCCceEEEEEEeecCchhhhhccccc--------cc--------------------hHHHHHHHHHHHHHhhhh
Confidence            62    45789999999999999999886421        22                    235678899999999999


Q ss_pred             HHhcCccccccccceEEEccCCCceEEeeeccccccCCCC-------------CCccCcccccCcCCCCchhHHHHHHHH
Q 005985          246 LHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDG-------------PNNSSPDSNMDRRQMMIAFDMRCVGFM  312 (666)
Q Consensus       246 LHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~-------------~~Y~APEvl~~~~~ys~ksDIWSLGvi  312 (666)
                      ||+++|+||||||+|||++. ++.+||+|||+++......             +.|+|||.+. ...++.++|||||||+
T Consensus       146 lH~~~iiHrDLK~~NILl~~-~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~ksDI~SfGiv  223 (311)
T d1r0pa_         146 LASKKFVHRDLAARNCMLDE-KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ-TQKFTTKSDVWSFGVL  223 (311)
T ss_dssp             HHHTTCCCSCCSGGGEEECT-TCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH-HCCCCHHHHHHHHHHH
T ss_pred             hcccCcccCCccHHhEeECC-CCCEEEecccchhhccccccccceecccccccccccChHHHh-cCCCCChhHhhhhHHH
Confidence            99999999999999999998 8999999999998654321             4699999655 4568999999999999


Q ss_pred             HHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCcCCCCCHHH
Q 005985          313 MAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKPSKRISCLD  392 (666)
Q Consensus       313 LyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~e  392 (666)
                      +|||++|..||....           ....+...   +.....+      ...+.+++++.+||.+||+.||++|||+.|
T Consensus       224 l~El~t~~~p~~~~~-----------~~~~~~~~---i~~g~~~------~~p~~~~~~l~~li~~cl~~dP~~RPs~~e  283 (311)
T d1r0pa_         224 LWELMTRGAPPYPDV-----------NTFDITVY---LLQGRRL------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSE  283 (311)
T ss_dssp             HHHHHTTSCCSCC-----------------CHHH---HHTTCCC------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHCCCCCCCCC-----------CHHHHHHH---HHcCCCC------CCcccCcHHHHHHHHHHcCCCHhHCcCHHH
Confidence            999999777764211           11111122   1222111      223467889999999999999999999999


Q ss_pred             HHcC
Q 005985          393 ALRH  396 (666)
Q Consensus       393 lL~H  396 (666)
                      +++|
T Consensus       284 i~~~  287 (311)
T d1r0pa_         284 LVSR  287 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9987


No 61 
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=2.1e-43  Score=376.95  Aligned_cols=280  Identities=18%  Similarity=0.194  Sum_probs=200.7

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh-hHHHHHHHHHHHHHhhhccC-----CCCCcc
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRL-----MYHSYS  158 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~-----~~HpnI  158 (666)
                      -++|+++++||+|+||    +||+|+++.     +++.||||+++... ..+...+|+.+++.+.+...     ++|+||
T Consensus        12 ~~rY~i~~~LG~G~fg----~Vy~~~~~~-----~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~i   82 (362)
T d1q8ya_          12 DARYILVRKLGWGHFS----TVWLAKDMV-----NNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHI   82 (362)
T ss_dssp             TTTEEEEEEEEECSSE----EEEEEEETT-----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTB
T ss_pred             CCcEEEEEEEeeCCCe----EEEEEEECC-----CCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCce
Confidence            3579999999999999    999999998     89999999998643 33556899999999974322     247899


Q ss_pred             eEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHH
Q 005985          159 MQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRD  238 (666)
Q Consensus       159 Vkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~Q  238 (666)
                      |++++++...   .....+++|+++..+..........      ....++                    ...++.+++|
T Consensus        83 v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------------------~~~i~~i~~q  133 (362)
T d1q8ya_          83 LKLLDHFNHK---GPNGVHVVMVFEVLGENLLALIKKY------EHRGIP--------------------LIYVKQISKQ  133 (362)
T ss_dssp             CCCCEEEEEE---ETTEEEEEEEECCCCEEHHHHHHHT------TTSCCC--------------------HHHHHHHHHH
T ss_pred             EEEEEEeeec---cccceeeeeeecccccccccccccc------cccCCc--------------------HHHHHHHHHH
Confidence            9999998633   4566777777776654333333221      112333                    3678999999


Q ss_pred             HHHHHHHHHh-cCccccccccceEEEccCCC-----ceEEeeeccccccCCCC------CCccCcccccCcCCCCchhHH
Q 005985          239 LLIGVNYLHS-HGLAHTELRLENVHISPVDR-----HIKVRILGNAADFYEDG------PNNSSPDSNMDRRQMMIAFDM  306 (666)
Q Consensus       239 Il~aL~yLHs-~gIvHRDLKPeNILi~~~~g-----~vKL~DFGlA~~~~~~~------~~Y~APEvl~~~~~ys~ksDI  306 (666)
                      |+.||+|||+ +||+||||||+|||++..+.     .+||+|||.|.......      +.|+|||++.+ ..|+.++||
T Consensus       134 il~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Di  212 (362)
T d1q8ya_         134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLG-APWGCGADI  212 (362)
T ss_dssp             HHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHT-CCCCTHHHH
T ss_pred             HHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhccc-cCCCccccc
Confidence            9999999998 89999999999999986222     49999999998655433      67999997765 458999999


Q ss_pred             HHHHHHHHHHHhCCCCChhh---------hhhhhhccccCCCchhHHHHH---HHHhhcC------CCCCC--------C
Q 005985          307 RCVGFMMAKMVLRELMDPLI---------FTKFKSFLTKGIDPSCLREFL---LQVLNRN------SSSGN--------T  360 (666)
Q Consensus       307 WSLGviLyeLltG~~PF~~~---------~~~~~~~~~~g~~~~~l~~~~---~~~~~~~------~~~~~--------~  360 (666)
                      ||+||++++|++|++||...         ......+...|..+.......   .......      .....        .
T Consensus       213 wSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (362)
T d1q8ya_         213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTE  292 (362)
T ss_dssp             HHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHH
T ss_pred             cchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhccc
Confidence            99999999999999999621         222333334454443322110   0000000      00000        0


Q ss_pred             CcccccCCcHHHHHHHHHhhhcCcCCCCCHHHHHcCCCCCCCC
Q 005985          361 GFQILDRNWGAGWNLLSLLLATKPSKRISCLDALRHPFLCGPR  403 (666)
Q Consensus       361 ~~~~~~~~s~~l~dLL~~mL~~DP~~RpTa~elL~HPwf~~~~  403 (666)
                      ........+++++|||.+||++||.+||||+|+|+||||++..
T Consensus       293 ~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         293 KYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             TTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             ccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCC
Confidence            1112234567999999999999999999999999999999654


No 62 
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=5.8e-42  Score=356.95  Aligned_cols=247  Identities=13%  Similarity=0.055  Sum_probs=194.9

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGY  164 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~  164 (666)
                      -++|++++.||+|+||    +||+|++..     +++.||||++........+.+|+++++.|.     .|+||+.++++
T Consensus         4 g~~Y~i~~~iG~G~fG----~Vy~a~~~~-----~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~~~~~   69 (293)
T d1csna_           4 GVHYKVGRRIGEGSFG----VIFEGTNLL-----NNQQVAIKFEPRRSDAPQLRDEYRTYKLLA-----GCTGIPNVYYF   69 (293)
T ss_dssp             TTTEEEEEEEEECSSC----EEEEEEETT-----TTEEEEEEEEECCTTSCCHHHHHHHHHHTT-----TCTTCCCEEEE
T ss_pred             CCceEEEEEEecCCCe----EEEEEEECC-----CCCEEEEEEEccccCcHHHHHHHHHHHHhc-----CCCCCCEEEEE
Confidence            3689999999999999    999999998     899999999876656666789999999998     46999999999


Q ss_pred             EeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 005985          165 VSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASRQLRLIRLLMRDLLIGVN  244 (666)
Q Consensus       165 ~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~~~~~i~~i~~QIl~aL~  244 (666)
                      +.     .....|+||||++ |+|.+++...+        ..+++                    ..+..++.|++.||+
T Consensus        70 ~~-----~~~~~~~vme~~~-~~l~~~~~~~~--------~~~~~--------------------~~~~~i~~q~~~~l~  115 (293)
T d1csna_          70 GQ-----EGLHNVLVIDLLG-PSLEDLLDLCG--------RKFSV--------------------KTVAMAAKQMLARVQ  115 (293)
T ss_dssp             EE-----ETTEEEEEEECCC-CBHHHHHHHTT--------TCCCH--------------------HHHHHHHHHHHHHHH
T ss_pred             ee-----cCCccEEEEEecC-CCHHHHHHhhc--------cchhh--------------------HHHHHHHHHHHHHHH
Confidence            98     7789999999996 49999998753        13443                    568889999999999


Q ss_pred             HHHhcCccccccccceEEEcc----CCCceEEeeeccccccCC----------------CCCCccCcccccCcCCCCchh
Q 005985          245 YLHSHGLAHTELRLENVHISP----VDRHIKVRILGNAADFYE----------------DGPNNSSPDSNMDRRQMMIAF  304 (666)
Q Consensus       245 yLHs~gIvHRDLKPeNILi~~----~~g~vKL~DFGlA~~~~~----------------~~~~Y~APEvl~~~~~ys~ks  304 (666)
                      |||++||+||||||+|||++.    .++.+||+|||+|+.+..                +++.|+|||++.+ ..|+.++
T Consensus       116 ~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~-~~~~~~~  194 (293)
T d1csna_         116 SIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG-REQSRRD  194 (293)
T ss_dssp             HHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTT-CCCCHHH
T ss_pred             HHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcC-CCCChHH
Confidence            999999999999999999974    257899999999986542                2378999997655 5699999


Q ss_pred             HHHHHHHHHHHHHhCCCCChhhhhhhhhccccCCCchhHHHHHHHHhhcCCCCCCCCcccccCCcHHHHHHHHHhhhcCc
Q 005985          305 DMRCVGFMMAKMVLRELMDPLIFTKFKSFLTKGIDPSCLREFLLQVLNRNSSSGNTGFQILDRNWGAGWNLLSLLLATKP  384 (666)
Q Consensus       305 DIWSLGviLyeLltG~~PF~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dLL~~mL~~DP  384 (666)
                      |||||||++|||++|.+||.......        .................      ....+.+++++.+|+..|+..+|
T Consensus       195 DiwSlG~~l~elltg~~Pf~~~~~~~--------~~~~~~~i~~~~~~~~~------~~l~~~~p~~l~~ii~~~~~~~~  260 (293)
T d1csna_         195 DLEALGHVFMYFLRGSLPWQGLKAAT--------NKQKYERIGEKKQSTPL------RELCAGFPEEFYKYMHYARNLAF  260 (293)
T ss_dssp             HHHHHHHHHHHHHHSSCTTSSCCSCC--------HHHHHHHHHHHHHHSCH------HHHTTTSCHHHHHHHHHHHHCCT
T ss_pred             HHHHhhHHHHHHHhCCCcCCCccchh--------HHHHHHHHHhccCCCCh------HHhcCCCCHHHHHHHHHHhcCCc
Confidence            99999999999999999996211100        00001111111111100      01224577899999999999999


Q ss_pred             CCCCCHHHHH
Q 005985          385 SKRISCLDAL  394 (666)
Q Consensus       385 ~~RpTa~elL  394 (666)
                      ++||+.+.+.
T Consensus       261 ~~rP~y~~l~  270 (293)
T d1csna_         261 DATPDYDYLQ  270 (293)
T ss_dssp             TCCCCHHHHH
T ss_pred             ccCcCHHHHH
Confidence            9999987654


No 63 
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.89  E-value=2.6e-24  Score=208.51  Aligned_cols=162  Identities=17%  Similarity=0.082  Sum_probs=120.4

Q ss_pred             eEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh--------------------hHHHHHHHHHHHHHh
Q 005985           88 FKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--------------------AQRRGRRAIEVLKKL  147 (666)
Q Consensus        88 Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~--------------------~~~~~~rEi~iL~~L  147 (666)
                      |.+.++||+|+||    +||+|++.      +++.||||+++...                    ......+|+..+.++
T Consensus         2 ~~vg~~IG~G~~g----~Vy~a~~~------~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l   71 (191)
T d1zara2           2 DAIGKLMGEGKES----AVFNCYSE------KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL   71 (191)
T ss_dssp             SEEEEEEEECSSE----EEEEEEET------TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             chhCCEeeeCcce----EEEEEECC------CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            5689999999999    99999986      58999999875311                    112235788889988


Q ss_pred             hhccCCCCCcceEEEEEEeccCCCCCCeEEEEEecCCCCCHHHHHHhcCCcccccccccCChhhhhccCCCCCCCCCCcc
Q 005985          148 VRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGYHGSFSLRHWLQQADWLPTLEATLALDEESVRKVGDDSIGGPAASR  227 (666)
Q Consensus       148 ~~~~~~~HpnIVkl~~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l~~~~~~~~l~~~~~lsEe~a~r~~~~~~~~~~~~~  227 (666)
                      .      |++++..+++..         .+++|||++++.+.+                +++                  
T Consensus        72 ~------~~~v~~~~~~~~---------~~lvme~~~~~~~~~----------------l~~------------------  102 (191)
T d1zara2          72 Q------GLAVPKVYAWEG---------NAVLMELIDAKELYR----------------VRV------------------  102 (191)
T ss_dssp             T------TSSSCCEEEEET---------TEEEEECCCCEEGGG----------------CCC------------------
T ss_pred             c------CCCcceEEEecC---------CEEEEEeeccccccc----------------hhh------------------
Confidence            7      999999887643         279999999854322                222                  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcCccccccccceEEEccCCCceEEeeeccccccCCCCC-CccCccc--c--cCcCCCCc
Q 005985          228 QLRLIRLLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVRILGNAADFYEDGP-NNSSPDS--N--MDRRQMMI  302 (666)
Q Consensus       228 ~~~~i~~i~~QIl~aL~yLHs~gIvHRDLKPeNILi~~~~g~vKL~DFGlA~~~~~~~~-~Y~APEv--l--~~~~~ys~  302 (666)
                        ..+..++.||+.||+|||++||+||||||+|||++.  +.++|+|||+|+....+.. .|....+  +  ...+.|+.
T Consensus       103 --~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~--~~~~liDFG~a~~~~~~~~~~~l~rd~~~~~~~f~r~y~~  178 (191)
T d1zara2         103 --ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE--EGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRT  178 (191)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEET--TEEEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeC--CCEEEEECCCcccCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence              225679999999999999999999999999999995  5699999999987765431 2211100  0  11345788


Q ss_pred             hhHHHHHHHH
Q 005985          303 AFDMRCVGFM  312 (666)
Q Consensus       303 ksDIWSLGvi  312 (666)
                      ++|+||+.--
T Consensus       179 ~~d~~s~~~~  188 (191)
T d1zara2         179 EKDINSAIDR  188 (191)
T ss_dssp             CCCHHHHHHH
T ss_pred             cccHHHHHHH
Confidence            9999998643


No 64 
>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
Probab=98.28  E-value=2e-06  Score=84.40  Aligned_cols=87  Identities=9%  Similarity=-0.007  Sum_probs=62.2

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchh--hHHHHHHHHHHHHHhhhccCCCCCcceEEE
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQ--AQRRGRRAIEVLKKLVRRRLMYHSYSMQVH  162 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~--~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~  162 (666)
                      ++.|++.+..+-++.+    .||+...       .++.+++|+.....  ......+|..+++.|.     .+--+.+++
T Consensus        13 ~~~~~~~~~~~G~s~~----~v~rv~~-------~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~-----~~vpvP~vl   76 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPA----KVYKLVG-------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLE-----GKLPVPKVL   76 (263)
T ss_dssp             HTTSEEEECSCCCSSS----EEEEEEC-------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHT-----TTSCCCCEE
T ss_pred             hhceEEEEcCCCCCCC----cEEEEEe-------CCCeEEEEEcCCCcccchhhHHHHHHHHHHHh-----ccCCCCcEE
Confidence            4678887775544445    8998753       46778899886432  2334688999999986     344466777


Q ss_pred             EEEeccCCCCCCeEEEEEecCCCCCHHHHH
Q 005985          163 GYVSSHTTSGRSLFTLVHGYHGSFSLRHWL  192 (666)
Q Consensus       163 ~~~~~~~~~~~~~l~LVmEy~~~GsL~~~l  192 (666)
                      ++..     +++..++||++++|.++.+..
T Consensus        77 ~~~~-----~~~~~~lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          77 HFER-----HDGWSNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             EEEE-----ETTEEEEEEECCSSEEHHHHT
T ss_pred             EEEe-----cCCceEEEEEecccccccccc
Confidence            7777     567889999999997776543


No 65 
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}
Probab=97.77  E-value=4.8e-05  Score=79.61  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             EeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecch---------hhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           91 LDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISV---------QAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        91 ~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~---------~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      .+.||.|...    .||++.+..     .++.|+||.-.+.         ....+..+|.++|+.+...   ....+.++
T Consensus        31 ~~eig~G~~N----~vfrV~~~~-----~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~---~p~~vP~v   98 (392)
T d2pula1          31 CQEIGDGNLN----YVFHIYDQE-----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEH---VPHLVPRV   98 (392)
T ss_dssp             EEECCSSSSE----EEEEEEC---------CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTT---CGGGSCCE
T ss_pred             EEEeCCCceE----eEEEEEeCC-----CCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhh---CCCCcceE
Confidence            5678999988    999998776     6788999976431         1223457799999988611   11345666


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCC
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFS  187 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~Gs  187 (666)
                      +.+..       ...++|||++++..
T Consensus        99 ~~~d~-------~~~~lvmE~L~~~~  117 (392)
T d2pula1          99 FYSDT-------EMAVTVMEDLSHLK  117 (392)
T ss_dssp             EEEET-------TTTEEEECCCTTSE
T ss_pred             EEEcC-------CCCEEEEeccCCcc
Confidence            65432       34578999998744


No 66 
>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}
Probab=97.75  E-value=6e-05  Score=73.01  Aligned_cols=82  Identities=17%  Similarity=0.090  Sum_probs=55.2

Q ss_pred             CeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEEEEEEe
Q 005985           87 DFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVS  166 (666)
Q Consensus        87 ~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~~  166 (666)
                      .+.. ..+..|..+   ..||+....      .+..+++|..... ....+.+|+..|+.|...    .-.+.+++.+..
T Consensus        12 g~~~-~~~~~G~s~---~~v~r~~~~------~~~~~vlK~~~~~-~~~~l~~E~~~l~~L~~~----gvpvP~v~~~~~   76 (255)
T d1nd4a_          12 GYDW-AQQTIGCSD---AAVFRLSAQ------GRPVLFVKTDLSG-ALNELQDEAARLSWLATT----GVPCAAVLDVVT   76 (255)
T ss_dssp             TCEE-EECSCTTSS---CEEEEEECT------TSCCEEEEEECSC-TTSCHHHHHHHHHHHHTT----TCCBCCEEEEEE
T ss_pred             CCce-EEcCCcccC---CeEEEEEeC------CCCEEEEEeCCcc-CHhHHHHHHHHHHHHHhc----CCCCCceeeecc
Confidence            3443 344555543   278988765      4677899987644 334578899999999721    122566777766


Q ss_pred             ccCCCCCCeEEEEEecCCCCCH
Q 005985          167 SHTTSGRSLFTLVHGYHGSFSL  188 (666)
Q Consensus       167 ~~~~~~~~~l~LVmEy~~~GsL  188 (666)
                           +.+..++||++++|-++
T Consensus        77 -----~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          77 -----EAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             -----CSSCEEEEEECCSSEET
T ss_pred             -----cccceEEEEEeeecccc
Confidence                 56788999999988554


No 67 
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=96.99  E-value=0.0012  Score=68.60  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             ccCCeEEEeEecCCCCCCCCceEEEEEEcCCCCC--CCCcEEEEEEecchhhHHHHHHHHHHHHHhhhccCCCCCcceEE
Q 005985           84 NMGDFKILDRVSIGLSGRADEVVFEAIVKDSNSP--LHNTKVVLRQLISVQAQRRGRRAIEVLKKLVRRRLMYHSYSMQV  161 (666)
Q Consensus        84 ~~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~--~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~~~~~~HpnIVkl  161 (666)
                      ..+..++ +.|+-|-.-    .+|++........  ...+.|.+++.-.........+|..+++.+.     .+.-..++
T Consensus        41 ~~~~l~v-~~l~GGltN----~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls-----~~gl~Pkl  110 (395)
T d1nw1a_          41 PLEHLRI-SRIKGGMSN----MLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLS-----ERHLGPKL  110 (395)
T ss_dssp             CGGGEEE-EEECCCTTE----EEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHH-----HTTSSSCE
T ss_pred             CccceEE-EEcCCcccc----ceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHH-----hCCCCCeE
Confidence            3455655 677767666    9999987642111  1356788887653333344578999999997     34444578


Q ss_pred             EEEEeccCCCCCCeEEEEEecCCCCC
Q 005985          162 HGYVSSHTTSGRSLFTLVHGYHGSFS  187 (666)
Q Consensus       162 ~~~~~~~~~~~~~~l~LVmEy~~~Gs  187 (666)
                      ++++.     +    .+||||++|..
T Consensus       111 l~~~~-----~----g~I~efi~g~~  127 (395)
T d1nw1a_         111 YGIFS-----G----GRLEEYIPSRP  127 (395)
T ss_dssp             EEEET-----T----EEEECCCCEEE
T ss_pred             EEEcC-----C----ceEEEEecccc
Confidence            88775     2    58999998743


No 68 
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Probab=96.36  E-value=0.003  Score=63.54  Aligned_cols=71  Identities=10%  Similarity=0.095  Sum_probs=45.5

Q ss_pred             eEEEEEEcCCCCCCCCcEEEEEEecchh-hHHHHHHHHHHHHHhhhccCCCCCcceEEEEEEeccCCCCCCeEEEEEecC
Q 005985          105 VVFEAIVKDSNSPLHNTKVVLRQLISVQ-AQRRGRRAIEVLKKLVRRRLMYHSYSMQVHGYVSSHTTSGRSLFTLVHGYH  183 (666)
Q Consensus       105 ~Vy~a~~~~~~~~~t~~~VAvK~i~~~~-~~~~~~rEi~iL~~L~~~~~~~HpnIVkl~~~~~~~~~~~~~~l~LVmEy~  183 (666)
                      .||+++..      +|..|++|+.++.. ..+++..|...|..|...+ +..+..+..-+-   ......+..+.+++++
T Consensus        37 ~vy~v~~~------dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~g-ipv~~p~~~~g~---~~~~~~~~~~~l~~~~  106 (325)
T d1zyla1          37 RVYQFQDE------DRRRFVVKFYRPERWTADQILEEHQFALQLVNDE-VPVAAPVAFNGQ---TLLNHQGFYFAVFPSV  106 (325)
T ss_dssp             EEEEECCT------TCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTT-CSBCCCCCBTTB---SCEEETTEEEEEEECC
T ss_pred             eeEEEEcC------CCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcC-CCCCCceecCCC---eeeeeeeEEEEEEeec
Confidence            89999886      48899999987643 4566788999999997322 111211111100   0011456788999999


Q ss_pred             CC
Q 005985          184 GS  185 (666)
Q Consensus       184 ~~  185 (666)
                      +|
T Consensus       107 ~G  108 (325)
T d1zyla1         107 GG  108 (325)
T ss_dssp             CC
T ss_pred             CC
Confidence            87


No 69 
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=96.24  E-value=0.007  Score=60.03  Aligned_cols=54  Identities=9%  Similarity=0.129  Sum_probs=35.3

Q ss_pred             cCCeEEEeEecCCCCCCCCceEEEEEEcCCCCCCCCcEEEEEEecchhhHHHHHHHHHHHHHhhh
Q 005985           85 MGDFKILDRVSIGLSGRADEVVFEAIVKDSNSPLHNTKVVLRQLISVQAQRRGRRAIEVLKKLVR  149 (666)
Q Consensus        85 ~~~Y~i~~~LG~G~fG~~~~~Vy~a~~~~~~~~~t~~~VAvK~i~~~~~~~~~~rEi~iL~~L~~  149 (666)
                      ++...-.+.|..|---    +.|+.+...       ..+++|+.......+++..|+.+|..|..
T Consensus        17 lg~~~~~~~i~~G~~N----~ny~v~t~~-------g~yVLri~~~~~~~~~l~~~~~~l~~L~~   70 (316)
T d2ppqa1          17 VGSLTSYKGIAEGVEN----SNFLLHTTK-------DPLILTLYEKRVEKNDLPFFLGLMQHLAA   70 (316)
T ss_dssp             CCCEEEEEEECC---E----EEEEEEESS-------CCEEEEEECC---CCHHHHHHHHHHHHHH
T ss_pred             CCCceEeecCCCCccc----CeEEEEECC-------CcEEEEEcCCCCCHHHHHHHHHHHHhhhh
Confidence            4445555666677656    889987653       45999998765455677889999999973


No 70 
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.98  E-value=20  Score=32.17  Aligned_cols=50  Identities=18%  Similarity=0.305  Sum_probs=35.2

Q ss_pred             CchHHHHHHHHHHhc--CC-cccccccccc-ccccccceeEEEeccCCceeE-Ee
Q 005985          613 NVDAAKNIVQEVRTQ--IP-PEMFDLSKFV-CGTYVDSRFLVLRGVNGSALL-FT  662 (666)
Q Consensus       613 ~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~  662 (666)
                      -++.-++-++|.+.-  .+ |+.+-|+=.- =.-+.++|.+|||||+...++ ||
T Consensus        12 P~~~f~~W~~~A~~~~~~~~p~a~~LATvd~~~G~P~~RtVllr~~~~~g~~fft   66 (205)
T d1ci0a_          12 PIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYS   66 (205)
T ss_dssp             HHHHHHHHHHHHHHCSSCSCTTEEEEEEEETTTTEEEEEEEECCEECSSSEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEEEeecCCCccchhhHHHHhhccceEEEEE
Confidence            345667778888653  22 6777777653 234789999999999986664 55


Done!