BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005987
(666 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MBA3|RAD17_ARATH Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana
GN=RAD17 PE=2 SV=1
Length = 599
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/543 (53%), Positives = 371/543 (68%), Gaps = 43/543 (7%)
Query: 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKT 192
S LW +KY+PR+LEEL+V +KKV+EV+ WF+E L K+ NVL++TGQAGVGK+
Sbjct: 87 SKNTDLWVDKYRPRTLEELSVHKKKVDEVKLWFQESLDFLKNGLRNNVLLVTGQAGVGKS 146
Query: 193 ATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252
AT+ I S LG ++EW+ P PTIWQE++HN +GL+YTSKLDEFENFVE R+YG +
Sbjct: 147 ATIHLITSILGVTVHEWNAPIPTIWQEHVHNTSSGLKYTSKLDEFENFVESTRKYGVMAS 206
Query: 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312
S K+ +LLIDDLP+ NGR AFERL+ CLLLLV+ST IPT +++T+ ADS D T
Sbjct: 207 SSTDGIKAPVVLLIDDLPLANGRHAFERLQNCLLLLVKSTQIPTVILITDHNNADSSDQT 266
Query: 313 AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDI 372
A+ E+ QS L AGA KVA NPIT SIK+ L +ICR+E ++T +ID +A ASGGDI
Sbjct: 267 ARRMEDTQSSLERAGALKVAFNPITKNSIKKVLQRICREEHCKVTTMEIDQMATASGGDI 326
Query: 373 RQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHG-----------GFSIQFGRDET 421
R AITSLQ S+K P LN + I P P + + HG G S FGRDET
Sbjct: 327 RHAITSLQLFSVK--PELNHT-KIKSPR-PGMEDNYHGNEQTMYSGLDSGISSCFGRDET 382
Query: 422 LSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLD 481
LSLFHALGKFLHNKRETDN++ + + +V D+F+RLPLKMDAPEKVLSQAHGQA V+D
Sbjct: 383 LSLFHALGKFLHNKRETDNVIISECSSSLVHDEFARLPLKMDAPEKVLSQAHGQAGRVVD 442
Query: 482 FLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAARG 541
FLHEN LDF+S+ AI+DAW V+SYL+DADLLLA RG++ +N ++V QSA ASVA RG
Sbjct: 443 FLHENVLDFVSDGAIEDAWCVSSYLADADLLLADIRGKMSGHNNTEDVPQSAGASVAVRG 502
Query: 542 VLFGNSHPVPPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWDGSISADVYNGSSSSDV 601
VL+GN P RWH IRKPKLW+V+QSS+Q KK L +++ ++ Y GS +D+
Sbjct: 503 VLYGNKQPCSSRWHVIRKPKLWQVEQSSIQTKKNLREQRNIS---------YEGSRVADI 553
Query: 602 SVLATEYAPALKWLGNRTSVGLEAHEAPIPDNETQDVDIFEGMS--LDDHESEISNYESE 659
SV+ATEY+P LKWL R S D F GM D+ +S+IS +
Sbjct: 554 SVMATEYSPVLKWLSYRAS-----------------PDAFPGMGEETDEEDSDISEDDEI 596
Query: 660 DDW 662
DW
Sbjct: 597 QDW 599
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 2 QISLSFEKFDEVLNGSKVSNVIWNQENDSALGSSSTQQLWTDKYKLCSLEEPDVQKKNVE 61
+I LSFE FDE L+G KVS S S LW DKY+ +LEE V KK V+
Sbjct: 63 KIRLSFEDFDEALSGFKVS---------SGYERSKNTDLWVDKYRPRTLEELSVHKKKVD 113
>sp|Q5R652|RAD17_PONAB Cell cycle checkpoint protein RAD17 OS=Pongo abelii GN=RAD17 PE=2
SV=1
Length = 681
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 219/486 (45%), Gaps = 61/486 (12%)
Query: 93 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELA 152
KN P +LE G + + GL N + S + W +KYKP + ELA
Sbjct: 50 KNGPSTLESSRFPARKRGNLSSLEQIYGLEN-----SKEYLSENEPWVDKYKPETQHELA 104
Query: 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212
V +KK+EEV W + ++ + + K ++L+ITG G GKT T++ ++ G ++ EW P
Sbjct: 105 VHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKILSKEHGIQVQEWINP 164
Query: 213 TPTIWQ----EYMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILL 265
+Q + M N ++ Y S++ F+ F+ R +Y I+L
Sbjct: 165 VLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIIL 224
Query: 266 IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325
++DLP R + L + L VR P ++++ D+ Q + I +
Sbjct: 225 VEDLPNQFYRDS-HTLHEVLRKYVRIGRCPLIFIISDSLSGDN----NQRLLFPKEIQEE 279
Query: 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTE-------QIDLVAQASGGDIRQAITS 378
++ NP+ + + L++I E + ++L+ Q GDIR AI S
Sbjct: 280 CSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINS 339
Query: 379 LQFS---------------SLKQDPMLNLSLSISKPN--FPEEKADGHGGFSIQFGRDET 421
LQFS SLK D +L+ S KP+ F ++ G G+D +
Sbjct: 340 LQFSSSKGENNLWPRKKGMSLKSDAVLSKSKQRKKPDRVFENQEVQAIG------GKDVS 393
Query: 422 LSLFHALGKFLHNKRETDNLVKMDQDAFVVK-DKFSRLPLKMDAPEKVLSQAHGQARPVL 480
L LF ALGK L+ KR + L ++D ++ R L ++ PE+V+ +H
Sbjct: 394 LFLFRALGKILYCKRAS--LTELDSPRLPSHLSEYERDTLLVE-PEEVVEMSHMPGDLFN 450
Query: 481 DFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAAR 540
+LH+N++DF E IDD + +LS AD+L + R ++L+ + S+A R
Sbjct: 451 LYLHQNYIDFFME--IDDIVRASEFLSFADILSGDWNTR--------SLLREYSTSIATR 500
Query: 541 GVLFGN 546
GV+ N
Sbjct: 501 GVMHSN 506
>sp|O75943|RAD17_HUMAN Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1
SV=2
Length = 681
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 219/486 (45%), Gaps = 61/486 (12%)
Query: 93 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELA 152
KN P +LE G + + GL N + S + W +KYKP + ELA
Sbjct: 50 KNGPSTLESSRFPARKRGNLSSLEQIYGLEN-----SKEYLSENEPWVDKYKPETQHELA 104
Query: 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212
V +KK+EEV W + ++ + + K ++L+ITG G GKT T++ ++ G ++ EW P
Sbjct: 105 VHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINP 164
Query: 213 TPTIWQ----EYMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILL 265
+Q + M N ++ Y S++ F+ F+ R +Y I+L
Sbjct: 165 VLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIIL 224
Query: 266 IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325
++DLP R + L + L VR P ++++ D+ Q + I +
Sbjct: 225 VEDLPNQFYRDS-HTLHEVLRKYVRIGRCPLIFIISDSLSGDN----NQRLLFPKEIQEE 279
Query: 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTE-------QIDLVAQASGGDIRQAITS 378
++ NP+ + + L++I E + ++L+ Q GDIR AI S
Sbjct: 280 CSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINS 339
Query: 379 LQFS---------------SLKQDPMLNLSLSISKPN--FPEEKADGHGGFSIQFGRDET 421
LQFS SLK D +L+ S KP+ F ++ G G+D +
Sbjct: 340 LQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQAIG------GKDVS 393
Query: 422 LSLFHALGKFLHNKRETDNLVKMDQDAFVVK-DKFSRLPLKMDAPEKVLSQAHGQARPVL 480
L LF ALGK L+ KR + L ++D ++ R L ++ PE+V+ +H
Sbjct: 394 LFLFRALGKILYCKRAS--LTELDSPRLPSHLSEYERDTLLVE-PEEVVEMSHMPGDLFN 450
Query: 481 DFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAAR 540
+LH+N++DF E IDD + +LS AD+L + R ++L+ + S+A R
Sbjct: 451 LYLHQNYIDFFME--IDDIVRASEFLSFADILSGDWNTR--------SLLREYSTSIATR 500
Query: 541 GVLFGN 546
GV+ N
Sbjct: 501 GVMHSN 506
>sp|Q9XT62|RAD17_CHLAE Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops
GN=RAD17 PE=1 SV=1
Length = 670
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 218/486 (44%), Gaps = 61/486 (12%)
Query: 93 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELA 152
KN P +LE G + + L N + S S + W +KYKP + ELA
Sbjct: 39 KNGPSTLESSKFPVRKRGNLSSLEQIYSLEN-----SKESLSENEPWVDKYKPETQHELA 93
Query: 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212
V +KK+EEV W + ++ + + K ++L+ITG G GKT T++ ++ G ++ EW P
Sbjct: 94 VHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKVLSKEHGIQVQEWINP 153
Query: 213 TPTIWQE----YMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILL 265
+Q+ + N ++ Y S++ F+ F+ R +Y I+L
Sbjct: 154 VLPDFQKDDFREIFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIIL 213
Query: 266 IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325
++DLP R + L + L VR P V+++ D+ Q + I +
Sbjct: 214 VEDLPNQFYRDS-HTLHEVLRKYVRIGRCPLIFVISDSLSGDN----NQRLLFPKEIQEE 268
Query: 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTE-------QIDLVAQASGGDIRQAITS 378
++ NP+ + + L++I E + ++L+ Q GDIR AI S
Sbjct: 269 CSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINS 328
Query: 379 LQFS---------------SLKQDPMLNLSLSISKPN--FPEEKADGHGGFSIQFGRDET 421
LQFS SLK D +L+ S KP+ F ++ G G+D +
Sbjct: 329 LQFSSSKGENNLWPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQAIG------GKDVS 382
Query: 422 LSLFHALGKFLHNKRETDNLVKMDQDAFVVK-DKFSRLPLKMDAPEKVLSQAHGQARPVL 480
L LF ALGK L+ KR + L ++D ++ R L ++ PE+V+ +H
Sbjct: 383 LFLFRALGKILYCKRAS--LTELDSPRLPSHLSEYERDTLLVE-PEEVVEMSHMPGDLFN 439
Query: 481 DFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAAR 540
+LH+N++DF + IDD + +LS AD+L + ++L+ + S+A R
Sbjct: 440 LYLHQNYIDFFMD--IDDIVRASEFLSFADILSGDW--------NTCSLLREYSTSIATR 489
Query: 541 GVLFGN 546
GV+ N
Sbjct: 490 GVIHSN 495
>sp|Q6NXW6|RAD17_MOUSE Cell cycle checkpoint protein RAD17 OS=Mus musculus GN=Rad17 PE=1
SV=2
Length = 688
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 137/496 (27%), Positives = 226/496 (45%), Gaps = 82/496 (16%)
Query: 93 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELA 152
K P +LE + + GR L+ + GL +++ S + W +KYKP + ELA
Sbjct: 50 KYLPSTLESNRLSARKRGR-LSLEQTHGL-----ETSRERLSDNEPWVDKYKPETQHELA 103
Query: 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212
V +KK+EEV W + ++ + K K +VL+ITG G GKT T++ ++ LG ++ EW P
Sbjct: 104 VHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTIKILSKELGIQVQEWVNP 163
Query: 213 TPTIWQEYMHNCKTGLE-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILL 265
+Q+ + LE Y S++ F +F+ R +Y + I+L
Sbjct: 164 ILPDFQKDDYKELLSLESNFSVVPYQSQIAVFNDFLLRATKYSKLQMLGDDLTTDKKIIL 223
Query: 266 IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325
+++LP R L + L V+ P ++++ D+ Q ++I +
Sbjct: 224 VEELPNQFYRDP-NALHEILRKHVQIGRCPLVFIVSDSVSGDN----NQRLLFPRNIQEE 278
Query: 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI--------DLVAQASGGDIRQAIT 377
++ NP+ + + L++I E S + E+I +L+ Q GDIR AI
Sbjct: 279 CSVSNISFNPVAPTIMMKFLNRIVTIEA-SKNGEKIIVPNKTSLELLCQGCSGDIRSAIN 337
Query: 378 SLQFS---------------SLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQF--GRDE 420
SLQFS SLK D ++ S K N E + IQ G+D
Sbjct: 338 SLQFSSSKGENSSWSKKKRMSLKSDAAISKSKQKKKHNSTLENQE------IQAIGGKDV 391
Query: 421 TLSLFHALGKFLHNKR----ETD------NLVKMDQDAFVVKDKFSRLPLKMDAPEKVLS 470
+L LF ALGK L+ KR E D +L + D+D +V+ PE+++
Sbjct: 392 SLFLFRALGKILYCKRAPLTELDSPRLPAHLSEHDRDTLLVQ------------PEEIVE 439
Query: 471 QAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVL 530
+H +LH+N++DF +E +DD + +LS AD+L + R ++L
Sbjct: 440 MSHMPGDFFNLYLHQNYIDFFAE--VDDLVPASEFLSFADILGGDWNTR--------SLL 489
Query: 531 QSAAASVAARGVLFGN 546
+ + SVA RGV+ N
Sbjct: 490 REYSTSVATRGVMHSN 505
>sp|P32641|RAD24_YEAST Checkpoint protein RAD24 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD24 PE=1 SV=1
Length = 659
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 74/342 (21%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEER-LGDSKDKFSTNVLVITGQAGVGKTATVRQ 197
W EK+KP LE++A+ ++K+++V+ + L ++K + +L+++G +G K+ +++
Sbjct: 66 WYEKFKPNCLEQVAIHKRKLKDVQEALDAMFLPNAKHR----ILLLSGPSGCSKSTVIKE 121
Query: 198 IASHLGARLYE-------WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIR--RYG 248
++ L + + TP E+ +C + L + E+F E ++ RY
Sbjct: 122 LSKILVPKYRQNSNGTSFRSTPNEHKVTEFRGDC-----IVNDLPQMESFSEFLKGARYL 176
Query: 249 STSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI---PTAVVLTECGK 305
S + +++LI+DLP R +Q +L + S+ P + +TEC
Sbjct: 177 VMS--------NLSLILIEDLPNVFHIDTRRRFQQLILQWLYSSEPLLPPLVICITECEI 228
Query: 306 ADSVDSTAQSF--------EEL--QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS 355
++ D+ + F E + + IL+ +++ NPI + +K+ L IC Q
Sbjct: 229 PEN-DNNYRKFGIDYTFSAETIMNKEILMHPRLKRIKFNPINSTLLKKHLKFICVQNMKM 287
Query: 356 LS--------TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKAD 407
L E ID +AQ +G DIR AIT+LQF A
Sbjct: 288 LKEKNKWNKRQEVIDYIAQETG-DIRSAITTLQFW-----------------------AT 323
Query: 408 GHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAF 449
G I R+ T+S FHA+GK +H T+N +M + F
Sbjct: 324 SSGSLPIS-TRESTISYFHAIGKVIHGSHSTNNDNEMINNLF 364
>sp|P50531|RAD17_SCHPO Checkpoint protein rad17 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad17 PE=1 SV=1
Length = 606
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 129/520 (24%), Positives = 204/520 (39%), Gaps = 131/520 (25%)
Query: 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVR 196
QLW EKY P+ +LAV + K+ ++ W L DS + +L+I G +G GK+ V+
Sbjct: 70 QLWFEKYIPQKAADLAVHKSKISAIKQWM---LTDS---LESRLLLICGPSGCGKSTAVQ 123
Query: 197 QIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVE-----------RIR 245
+A LG L EW P +E + L T K F + E I+
Sbjct: 124 VLAKELGYSLIEWLNPMN--LKEPSNQESDTLSLTEKFSRFMSLCETYPELELMDSNNIQ 181
Query: 246 RYGSTSPSIPGESKSSAILLIDDLP-VTNGRTAFERLRQCL-LLLVRSTHIPTAVVLTEC 303
+ G + G+ K + +D++P ++ + + R + L +VLTE
Sbjct: 182 KRGKNA---QGKKK---FIFLDEIPHLSKFNGSLDAFRNVIRTALTSRGAFSIIMVLTEI 235
Query: 304 --GKADSVDSTAQ-SFEELQ----SILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL 356
+ ++S + SF +Q +L D + NPI +K+ L I R+E
Sbjct: 236 QLNNLEGINSQDRNSFNSVQIMGNDLLQDPRVTVLQFNPIAPTYMKKCLGSILRKEGVPK 295
Query: 357 STEQIDLV---AQASGGDIRQAITSLQFSSLKQDPMLNLSLSISK---PNFPEEK-ADGH 409
S + + LV AS GD+R AI SLQ L++S S K N E K G
Sbjct: 296 SPKLLSLVENICSASEGDLRSAINSLQ---------LSISQSFEKKGTKNIREVKEGKGK 346
Query: 410 GG-FSIQ-------------------------------------FGRDETLSLFHALGKF 431
G FS++ F +D L + HA+GK
Sbjct: 347 GNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVGLGMMHAIGKV 406
Query: 432 LHNKRETDNLV------KMDQDAFVVKDKFSR-------LPLKMDAPEKVLSQAH---GQ 475
+ NKRE D+ V + + K S+ + LK D E++L+ +
Sbjct: 407 VWNKREGDDEVLKASSQQTGNSERIKGVKVSKSQENKNCISLKSDQRERMLNVDQCFTSK 466
Query: 476 ARPVLDF-----------------LHENFLDFISEDAIDDAWAVASYLSDADLLLASFRG 518
R ++D L EN++D S D+A+ V LS +D L F
Sbjct: 467 RRSLVDIESTINQSGLSGSVFRYGLFENYVD--SCVTTDEAFNVCDLLSISDCLSHDF-- 522
Query: 519 RLVRYNEADNVLQSAAASVAARGVLFGNSHPVPPRWHAIR 558
Y+ + + + + +G LF PVP +W +R
Sbjct: 523 ---PYSYTGDEI---STWFSVQGTLFYLPSPVPRKWRQLR 556
>sp|Q8TPU4|RFCL_METAC Replication factor C large subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcL
PE=3 SV=1
Length = 607
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/438 (21%), Positives = 171/438 (39%), Gaps = 115/438 (26%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEE---RLGDSKDKFSTNVLVITGQAGVGKTATV 195
WAEKY+PR+LE++ +K V + RAW EE R+ + T +++ G AG+GKT++
Sbjct: 12 WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPE------TRAVILYGPAGIGKTSS- 64
Query: 196 RQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255
+H AR +WD +E + +E+I ++ ++
Sbjct: 65 ----AHALARDMDWDV----------------IELNASDQRTAGVIEKIAGSAASMNTLF 104
Query: 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQS 315
G S ++++D+ +G TA + + +++ T P ++ A+ + +
Sbjct: 105 G---SKRLIILDEADNIHG-TADRGGMRAISGIIKGTLQPIVLI------ANDIYGLTPT 154
Query: 316 FEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQA 375
L ++ + + S+ L K+C E S E + +A+ +GGD R A
Sbjct: 155 IRNL--------CLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSA 206
Query: 376 ITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435
I LQ ++ ++ + + + GRD ++F A+ K
Sbjct: 207 INDLQAAASGKEKLEVEDIGTA-------------------GRDVKENIFKAMQKIF--- 244
Query: 436 RETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLH---ENF-LDFI 491
+ TD +K L A+G D +H EN + +
Sbjct: 245 KSTDC-------------------------KKALESAYGLDESPEDLVHWIDENLPIQYA 279
Query: 492 SEDA-IDDAWAVASYLSDADLLLASFRG----RLVRYNEADNVLQSAAASVAARGVLFGN 546
+D ++D YLS ADL L + R+ RY A+ + G
Sbjct: 280 RKDGNLEDIKTGFGYLSKADLYLGRVKKRQNYRMWRY----------ASMLMVCGAALSK 329
Query: 547 SHPVPPRWHAIRKPKLWR 564
+ P P + ++P LWR
Sbjct: 330 TKPYPG-FIKYQQPSLWR 346
>sp|Q46AT6|RFCL_METBF Replication factor C large subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcL PE=3 SV=1
Length = 642
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/435 (21%), Positives = 169/435 (38%), Gaps = 109/435 (25%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+P++L+E+ +K V+ +R W E+ L D+ +V+ G AGVGKT+T
Sbjct: 7 WAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDR---RAVVLHGPAGVGKTST---- 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
+H AR +W+ +E + +ER+ ++ + G
Sbjct: 60 -AHALARDLDWEV----------------IELNASDQRTAGVIERVAGSAASMNTFFGGK 102
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ ++++D+ +G TA + + ++++T P ++ A+ + +
Sbjct: 103 R---LIILDEADNIHG-TADRGGMRAIAGIIKNTLQPIVLI------ANDIYGLTPTIRN 152
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L ++ + + S+ L K+C E S + I +A+ +GGD+R AI
Sbjct: 153 L--------CLEIKFGSVQSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAIND 204
Query: 379 LQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRET 438
LQ ++ + + LS S GRD ++F A+ + + T
Sbjct: 205 LQAAATGRKTLEVEDLSTS-------------------GRDVKENIFKAMQRIF---KST 242
Query: 439 DNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLH---ENF-LDFISED 494
D +K L A G D +H EN + S+D
Sbjct: 243 DC-------------------------KKALEAARGLDESPEDLVHWIDENLPFQYASKD 277
Query: 495 A-IDDAWAVASYLSDADLLLASFRG----RLVRYNEADNVLQSAAASVAARGVLFGNSHP 549
++D YLS ADL L + R+ RY A+ + G + P
Sbjct: 278 GNLEDIKTGFGYLSKADLYLGRVKKRQNYRMWRY----------ASMLMVCGTSVSKTRP 327
Query: 550 VPPRWHAIRKPKLWR 564
P + + P LW+
Sbjct: 328 Y-PGFIKYQPPSLWK 341
>sp|Q12TX1|RFCL_METBU Replication factor C large subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=rfcL PE=3 SV=1
Length = 497
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 94/429 (21%), Positives = 168/429 (39%), Gaps = 111/429 (25%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++ +K V ++R W + L + +K +++ G AGVGKT+
Sbjct: 7 WVEKYRPQSLTDIVGNKKSVVDMREWAQSWLSGTPEK---RAIILHGPAGVGKTS----- 58
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+H AR +W+T +E + +ER+ S S+ G +
Sbjct: 59 AAHALARDLDWET----------------IELNASDQRTAGVIERVAGSASKMSSLTG-T 101
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC-GKADSVDSTAQSFE 317
+ ++++D+ +G R + ++++T P ++ + G SV
Sbjct: 102 TAKRLIILDEADNIHGNADRGGAR-AIGGIIKNTDQPIVLIANDLYGLTPSV-------- 152
Query: 318 ELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377
+S+ ++ + N + S+ + +IC +E+ ++ +A+++GGD+R AI
Sbjct: 153 --RSLCIE-----LKFNSVQGRSMIPAMKRICVEEKIMCGVGVLEKLAESAGGDLRSAIK 205
Query: 378 SLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRE 437
LQ + +D + ++ S+ RD S+F LGK +
Sbjct: 206 DLQAVATGRDEIHIEDIATSE-------------------RDTKESIFKVLGKIF---KS 243
Query: 438 TDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISED--- 494
TD P+K L +G LD EN + +I E+
Sbjct: 244 TD-------------------------PKKALEATYG-----LDETPENLIHWIDENLPL 273
Query: 495 -------AIDDAWAVASYLSDADLLLASFRG----RLVRYNEADNVLQSAAASVAARGVL 543
+D YL+ AD L R RL RY A L + V+ V
Sbjct: 274 QYGTEEGTQEDLITGYEYLAKADRYLGRVRKRQSYRLWRYAGA---LMTCGTVVSKTHVG 330
Query: 544 FGNSHPVPP 552
G + PP
Sbjct: 331 RGFTKYQPP 339
>sp|Q8Q084|RFCL_METMA Replication factor C large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcL PE=3 SV=1
Length = 610
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/436 (20%), Positives = 172/436 (39%), Gaps = 111/436 (25%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+PR+L ++ RK V+++R W EE +K +++ G AG+GKT++ +
Sbjct: 12 WAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEK---RAVILYGPAGIGKTSSAHAL 68
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A + EW+ +E + +E+I ++ + G
Sbjct: 69 AGDM-----EWEV----------------IELNASDQRTAGVIEKIAGSAASMNTFFGGK 107
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC-GKADSVDSTAQSFE 317
+ ++++D+ +G TA + + +++ST P ++ + G +V
Sbjct: 108 R---LIILDEADNLHG-TADRGGMRAISGIIKSTLQPIILIANDIYGLTPTV-------- 155
Query: 318 ELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377
++I ++ + + + S+ L K+C E S S E + +A+ +GGD R AI
Sbjct: 156 --RNICLE-----IKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAIN 208
Query: 378 SLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRE 437
LQ ++ + + +S + GRD ++F A+ K +
Sbjct: 209 DLQAAANGKKALEAEDISTA-------------------GRDVKENIFKAMQKIF---KS 246
Query: 438 TDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLH---ENF-LDFISE 493
TD ++ L A+G D +H EN + + +
Sbjct: 247 TDC-------------------------KRALESAYGLDESPEDLVHWIDENLPIQYARK 281
Query: 494 DA-IDDAWAVASYLSDADLLLASFRG----RLVRYNEADNVLQSAAASVAARGVLFGNSH 548
D ++D YLS AD+ L + R+ RY A+ + G +
Sbjct: 282 DGDLEDIKTGFGYLSKADIYLGRVKKRQNYRMWRY----------ASMLMVCGAALSKTR 331
Query: 549 PVPPRWHAIRKPKLWR 564
P P + ++P LWR
Sbjct: 332 PY-PGFIKYQQPSLWR 346
>sp|Q58294|RFCL_METJA Replication factor C large subunit OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rfcL PE=1 SV=1
Length = 516
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 113/250 (45%), Gaps = 44/250 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL+++A K E+++ W E L K +++ G G GKT +
Sbjct: 4 WVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPK----PILLVGPPGCGKTTLAYAL 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ G + E L + K + + ++++ + +TS SI G+
Sbjct: 60 ANDYGFEVIE-------------------LNASDKRNS--SAIKKVVGHAATSSSIFGKK 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC-GKADSVDSTAQSFE 317
++++D++ +G+ + + + ++ ++ + ++LT A S+ S E
Sbjct: 99 ---FLIVLDEVDGISGKEDAGGVSELIKVIKKAKN---PIILTANDAYAPSIRSLLPYVE 152
Query: 318 ELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377
+Q LNP+ S+ + L KI +E + + + ++AQ S GD+R AI
Sbjct: 153 VIQ------------LNPVHTNSVYKVLKKIAEKEGLDVDDKTLKMIAQHSAGDLRSAIN 200
Query: 378 SLQFSSLKQD 387
L+ +L D
Sbjct: 201 DLEALALSGD 210
>sp|C3NHF4|RFCL_SULIN Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rfcL PE=3 SV=1
Length = 405
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAV 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + + E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKGVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--IIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDTRYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|C4KHA7|RFCL_SULIK Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rfcL PE=3 SV=1
Length = 405
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + ++ E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKSVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--IIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|C3NE95|RFCL_SULIY Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + + E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKGVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--IIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|C3MQ13|RFCL_SULIL Replication factor C large subunit OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + + E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKGVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--IIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|C3MVD2|RFCL_SULIM Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + ++ E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKSVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--LIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|C3N5N1|RFCL_SULIA Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.27) GN=rfcL PE=3 SV=1
Length = 405
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+PRSL+++ Q +E++ W E L K + +++ G GVGKT +
Sbjct: 4 WFLKYRPRSLKDVENQDGAKKELQEWIESWLNG---KPNAKAVLLHGPPGVGKTTLAEAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + KL + ++ E+ YGS +
Sbjct: 61 AHDYNLELLEMNASD-----------------SRKLQDIKSVAEKASVYGSIFGT----- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + Q +L L+ T P +++T + D + E
Sbjct: 99 -RGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--LIMT------ANDPWNPALRE 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + V LN + ++R L KIC+ E+ E ++ + S GD R AI
Sbjct: 149 LRN-----KTKMVGLNKLGKYPLRRLLKKICQAEKIICDDEALNYIIDTSEGDARYAINM 203
Query: 379 LQ 380
LQ
Sbjct: 204 LQ 205
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 54/279 (19%)
Query: 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194
T +W EKY+PR LE++ Q++ +E +R++ +R L+ TG AG GKT
Sbjct: 4 THAIWIEKYRPRVLEDIIGQQEIIERLRSYVAKR--------EMPHLLFTGNAGTGKTTA 55
Query: 195 VRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254
A L + D WQ E +D N +I+++ TSP
Sbjct: 56 ----AVALAREFFGED------WQMNFRELNASDE--RGIDVVRN---QIKQFARTSPF- 99
Query: 255 PGESKSSAILLID--DLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312
+ IL +D D T+ ++A R + T+ T + C + +
Sbjct: 100 --GGSTFKILFLDEADALTTDAQSALRRTME--------TYAQTCRFILSC------NYS 143
Query: 313 AQSFEELQSILVDAGARKVAL---NPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369
A+ + +QS + A+ P+ ++ + +I + +++ E ID + +
Sbjct: 144 AKIIDPIQS--------RCAIYRFRPLGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQ 195
Query: 370 GDIRQAITSLQFSS-LKQDPMLNLSLSISKPNFPEEKAD 407
GD+R+AI +LQ ++ L +D ++ +I+ PEE D
Sbjct: 196 GDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDD 234
>sp|A0B6D7|RFCL_METTP Replication factor C large subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rfcL PE=3 SV=1
Length = 467
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 42/245 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+P++L+ + K V E+RAW + K + L++ G GVGKT+ +
Sbjct: 4 WAEKYRPKNLDGILGNAKAVSELRAWA---MAWEKGRPEVKCLILYGPPGVGKTSAALAL 60
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
AS + +WD +E + ++ I S + G
Sbjct: 61 ASEM-----DWDY----------------IELNASDQRTAEIIKSIAGPASQVSTFSGRR 99
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ + D+L T R +L ++++ P ++ E +
Sbjct: 100 RLVILDEADNLHGTYDRGGA----AAILRVIKNATQPVILIANE-------------YYN 142
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
++ L DA R V I +I L +ICR E E + +A SGGD+R AI
Sbjct: 143 IEKPLRDA-CRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGDLRSAIND 201
Query: 379 LQFSS 383
L+ ++
Sbjct: 202 LEAAA 206
>sp|Q975D4|RFCL_SULTO Replication factor C large subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcL PE=3
SV=2
Length = 440
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+P++L E+ + +E+ W E L K K + +++ G GVGKT +
Sbjct: 5 WFLKYRPKTLNEVENEEDAKKELVEWIESWL---KGKPNYKAVLLYGPPGVGKTTLAEAL 61
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L+E + + L++ ER S + +I G
Sbjct: 62 ARDYKLELFEMNASD-----------------SRNLNDIRTMAER----ASITGTIFG-- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++L+D++ N R + +L L+ T P ++LT + D S
Sbjct: 99 IKGKLILLDEVDGLNARADAGAI-DAILELINKTKYP--IILT------ANDPWDPSLRP 149
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ + + L +T +KR L KIC E+ + E +D + + S GD R AI
Sbjct: 150 LRN-----AVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINM 204
Query: 379 LQ 380
LQ
Sbjct: 205 LQ 206
>sp|Q9UXF6|RFCL_SULSO Replication factor C large subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcL
PE=1 SV=1
Length = 405
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 42/243 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERL-GDSKDKFSTNVLVITGQAGVGKTATVRQ 197
W KY+PRSL+++ Q ++++ W E L G+S + +++ G GVGKT
Sbjct: 4 WFLKYRPRSLKDVENQDDAKKQLQEWIESWLNGNS----NVKAVLLHGPPGVGKTVLAEA 59
Query: 198 IASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGE 257
+A L E + + KL + ++ E+ YGS +
Sbjct: 60 LAHDYNFELLEMNASD-----------------SRKLQDIKSIAEKAAVYGSIFGT---- 98
Query: 258 SKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFE 317
++L+D++ N R + Q +L L+ T P +++T + D
Sbjct: 99 --KGKLILLDEVDGINVREDTGAI-QGILELIEKTKYP--IIMT------ANDPWNPGLR 147
Query: 318 ELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377
EL++ A+ + L+ + ++R L KIC+ E+ E ++ + +S GD R AI
Sbjct: 148 ELRN-----KAKMIELSKLGKYPLRRILKKICQAEKIICDDEALNYIIDSSEGDARYAIN 202
Query: 378 SLQ 380
LQ
Sbjct: 203 ILQ 205
>sp|Q5JHP1|RFCL_PYRKO Replication factor C large subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcL PE=1
SV=1
Length = 499
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 45/246 (18%)
Query: 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194
T+ W EKY+PR L E+ Q K +E+VRAW E L + K L++ G GVGKT T
Sbjct: 2 TEVPWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPK--KKALLLAGPPGVGKTTT 59
Query: 195 VRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254
V +A+ G + E + E E+I RY + ++
Sbjct: 60 VYALANEYGFEVIELNASD------------------------ERTYEKIERYVQAAYTM 95
Query: 255 PGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQ 314
K ++ +D+ N + R L+ R+ I +A E + + + AQ
Sbjct: 96 DILGKRRKLIFLDE--ADNIEPSGAREIAKLIDKARNPIIMSANHYWEVPR--EIRNKAQ 151
Query: 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
E +T I + L +I ++E + E + +A+ + GD+R
Sbjct: 152 IVE---------------YKRLTQRDIIKALVRILKREGLEVPKEVLYEIAKRANGDLRA 196
Query: 375 AITSLQ 380
A+ LQ
Sbjct: 197 AVNDLQ 202
>sp|Q2FQR4|RFCL_METHJ Replication factor C large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcL PE=3 SV=1
Length = 483
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 113/259 (43%), Gaps = 44/259 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+PR L E+ R+ + ++ W ++ + L++ G+ G+GKT++ +
Sbjct: 3 WAEKYRPRHLNEMVGNREALHQMSEWA------TRWTVESPPLILYGKPGIGKTSSAWAL 56
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A + W+ +E + + +E++ +++ S+ G +
Sbjct: 57 AHDM-----NWEV----------------VELNASDQRTKAVIEKVAGGSASTGSLTGAA 95
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ ++++D+ G R + ++R P ++ + +D T ++
Sbjct: 96 RK--LIILDEADNLQGNADRGGAR-AIAEVIRQARQPLILIANDLY---GLDGTIRNL-- 147
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
KV + S+ L +IC +EQ + S + + +A+ SGGDIR A+T
Sbjct: 148 ---------CTKVQFKALPAKSLVPRLREICSREQLTCSAQALTDIAEQSGGDIRSAVTM 198
Query: 379 LQFSSLKQDPMLNLSLSIS 397
L S++ +D + +SIS
Sbjct: 199 LYASAIGKDTVGEDDVSIS 217
>sp|Q5UQ47|RFCS1_MIMIV Putative replication factor C small subunit R395 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R395 PE=3 SV=1
Length = 319
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 118/274 (43%), Gaps = 59/274 (21%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNV-LVITGQAGVGKTATVRQ 197
W EKY+P +++++ + +++ + ++R NV L+ITG GVGKT+TVR
Sbjct: 7 WIEKYRPVNIDDVIIDDNISKQINIFLQDR---------ENVHLIITGSPGVGKTSTVRC 57
Query: 198 IASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGE 257
IA L + Q Y LE + D R S S IP
Sbjct: 58 IAKELLGE---------DMSQGY-------LEINAAED---------RGVRSISTIIPPF 92
Query: 258 SK------SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDS 311
K S I+L+D+ + + ++ + +++ T + T +
Sbjct: 93 CKKVFAANKSKIILLDEADIMTSKCQYD-----INNMIKKFGRKTKFIFT-------CND 140
Query: 312 TAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371
+++ E++QSI R + +T+ I + LSKIC E+ + + + S GD
Sbjct: 141 SSKIIEDIQSI-----CRILRFKKLTDEQINQYLSKICVNEKIPYDEQGLRTICYISNGD 195
Query: 372 IRQAITSLQFSSLKQDPML-NLSLSISKPNFPEE 404
+R++I LQ ++ + + NL L I K PE+
Sbjct: 196 MRKSINDLQKTAFTFEKITKNLVLKICKVPDPED 229
>sp|A6URV8|RFCL_METVS Replication factor C large subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcL PE=3 SV=1
Length = 492
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 46/244 (18%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++A K E + W E + +K K +++ G G GKT I
Sbjct: 4 WVEKYRPKSLNDVAGHSKTKEALCYWIESFIRGNKQK----PVLLFGPPGSGKTTMAHAI 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ Y +D +E + ++ + ++ +TS S+ G
Sbjct: 60 AND-----YNFDV----------------IELNASDKRNKDVISQVVGTAATSKSLTG-- 96
Query: 259 KSSAILL--IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316
K + I+L +D L + R + + L ++ P V+LT A+ V A S
Sbjct: 97 KRTLIVLDEVDGLSGNDDRGGVSEIIKVL----KNAENP--VILT----ANDVYKPALSS 146
Query: 317 EELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376
+VDAG+ + SI L KI +E + + + I L++ +GGD+R AI
Sbjct: 147 LRNSVTMVDAGS-------VHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAI 199
Query: 377 TSLQ 380
LQ
Sbjct: 200 NDLQ 203
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 71/314 (22%)
Query: 132 SSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERL-GDSKDKFSTNVLVITGQAGVG 190
+ S++ W KY+P+ +E++ Q + + + WF+ L G DK + ++ G GVG
Sbjct: 5 ARSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAA---LLYGPPGVG 61
Query: 191 KTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGST 250
KT+ V IAS + E + +Y + D +ERI S
Sbjct: 62 KTSLVEAIASEFNLEMIELNAS----------------DYRRRSD-----IERIVGAASR 100
Query: 251 SPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVD 310
S+ K ++L+D++ N R + + LL ++++T P +V+T D
Sbjct: 101 KRSM---FKRGVVILLDEVDGINPREDAGGI-EALLSVIKTTENP--IVMTAN---DPWK 151
Query: 311 STAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370
+ E+ S++V+ P+T I L +IC E+ E + +A+ S G
Sbjct: 152 DFLRPLREV-SLMVE-------FRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEG 203
Query: 371 DIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQF------GRDETLSL 424
D+R AI LQ A+G+G ++ GR++++ +
Sbjct: 204 DLRSAINDLQAV-----------------------AEGYGRVTLTLAREIVRGREKSIDI 240
Query: 425 FHALGKFLHNKRET 438
+ L + + R+
Sbjct: 241 WRTLNQVFYKPRQA 254
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 59/260 (22%)
Query: 132 SSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGK 191
SS + LW EKY+PRSL+++ Q+ VE ++ + ++R + L+ G G GK
Sbjct: 2 SSVLEMLWVEKYRPRSLDDIVDQKHVVERLKQFVKQR--------NMPHLLFAGPPGTGK 53
Query: 192 TATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFV-ERIRRYG-- 248
T +A L Y ++YM LE + + N + E+++ +
Sbjct: 54 TTAAHALAHDLFGENY----------RQYM------LELNASDERGINVIREKVKEFARS 97
Query: 249 STSPSIPGESKSSAILLID--DLPVTNGRTAFERLRQCLLLLVRSTHI---PTAVVLTEC 303
T P IP + I+L+D D ++ + A RL + + R I P+ ++
Sbjct: 98 RTPPEIPFK-----IVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKII---- 148
Query: 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363
D + S F P++ + L I E E +D
Sbjct: 149 ---DPIQSRCAFFR---------------FQPLSKQDVIERLRYIAENEGVDYEEEALDA 190
Query: 364 VAQASGGDIRQAITSLQFSS 383
+ + S GD+R+AI LQ +S
Sbjct: 191 IYEISEGDMRKAINVLQAAS 210
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 47/246 (19%)
Query: 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVR 196
++W EKY+P+SL E+ + + +++++++ E++ L+ G G GKT+T
Sbjct: 3 EIWTEKYRPKSLSEIYGEDENIQKLKSFVEKK--------ELPHLLFAGSVGTGKTSTAI 54
Query: 197 QIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256
+A L W+E E + +D N ++ I R PS P
Sbjct: 55 ALAIELFGES----------WKENFIEMNASNE--NGIDVIRNKIKDIAR---IRPSNPL 99
Query: 257 ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316
K IL +D+ A LR+ + + +T A C + + QS
Sbjct: 100 GFK---ILFLDEADQLTAE-AQAALRRTMEMYSETTRFVFA-----CNYSSKIIPPIQS- 149
Query: 317 EELQSILVDAGARKVAL--NPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
R V + P+ + IK+ L++I + E +++ E ++ + + SGGD+R+
Sbjct: 150 ------------RTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRK 197
Query: 375 AITSLQ 380
AI LQ
Sbjct: 198 AINVLQ 203
>sp|A2BL93|RFCL_HYPBU Replication factor C large subunit OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rfcL PE=3 SV=1
Length = 484
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 47/246 (19%)
Query: 139 WAEKYKPRSLEELAVQRKK----VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194
W KY+P+ +E++ Q + + +R+W + R+ + K + G AGVGKT+
Sbjct: 7 WIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERK------AALFYGPAGVGKTSL 60
Query: 195 VRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254
V A+ G L E + ++ K D +ERI + +T S+
Sbjct: 61 VEAAANEYGLELIEMNAS----------------DFRRKSD-----IERIAKIAATQFSL 99
Query: 255 PGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQ 314
G + I+L+D++ +G TA +L L+ T P +V+T + D Q
Sbjct: 100 FGRKRK--IILLDEVDGISG-TADRGGLDAILELINITKHP--IVMT------ANDPWDQ 148
Query: 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
+ L+ + V ++ + + L +IC E E + L+AQ + GD+R
Sbjct: 149 KLKPLRD-----ASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRS 203
Query: 375 AITSLQ 380
AI LQ
Sbjct: 204 AINDLQ 209
>sp|A6UWR5|RFCL_META3 Replication factor C large subunit OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rfcL PE=3 SV=1
Length = 474
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+++ E+ K EE++ W EE L + K +++ G G GKT +
Sbjct: 3 WVEKYRPKTMSEIVGNNKIKEELKNWIEEILHNEIPK----PVLLVGPPGCGKTTLTNAL 58
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ G L E L + K ++ + + +I S+S SI G+
Sbjct: 59 ANDYGFELIE-------------------LNASDKRNK--DIIRQIVGGASSSKSITGKR 97
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
++++D++ +G + + + ++ ++++ P ++LT + D S
Sbjct: 98 ---VLIVLDEVDGLSGNSDRGGVSE-IIKIIKNAKNP--IILT------ANDIYKPSLMS 145
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L+++ V + + SI L +I +E + + + + ++A+ +GGD+R AI
Sbjct: 146 LRTV-----CNIVKIGSVHTNSIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAIND 200
Query: 379 LQ 380
L+
Sbjct: 201 LE 202
>sp|Q4JAB1|RFCL_SULAC Replication factor C large subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcL PE=3 SV=1
Length = 437
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 40/242 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W KY+P+SL+E+ Q + EE++ W E L + +++ G GVGKT +
Sbjct: 5 WFLKYRPKSLQEVENQDEVKEELKKWIESWLNGEP---TAKAVLLYGPPGVGKTTLAEAL 61
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A L E + + L + ++ ER S S S+ G
Sbjct: 62 ARDYKLELLEMNASD-----------------SRNLRDIKDVAER----ASISGSLFG-- 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
I+L+D++ R + +L L+ T P V+LT D D + +S
Sbjct: 99 IKGKIILLDEIDGIYSRADAGAI-PAILELIEKTKYP--VILTA---NDPWDPSLRSLRN 152
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
+ + L + +KR L +IC +E+ E +D + + S GD R I
Sbjct: 153 --------AVKMIELKRLGKYPLKRLLKRICEKEKIVCIDEALDHIIEQSEGDARYCINM 204
Query: 379 LQ 380
LQ
Sbjct: 205 LQ 206
>sp|A7I781|RFCL_METB6 Replication factor C large subunit OS=Methanoregula boonei (strain
6A8) GN=rfcL PE=3 SV=1
Length = 481
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 182/461 (39%), Gaps = 116/461 (25%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+P L ++ V ++ W + SK L++ G+ G+GKT++V +
Sbjct: 3 WAEKYRPEHLADIVGNTSAVRQMADWAKTWTARSKP------LLLYGKPGIGKTSSVYAL 56
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A R WD +E + +ERI GST+ S+ G +
Sbjct: 57 A-----RDMNWDV----------------IELNASDQRTAAVIERIAGAGSTTASLTGSA 95
Query: 259 KSSAIL-LIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFE 317
+ I+ D+L T R + + +C +++ P ++ +
Sbjct: 96 RKLIIMDEADNLQGTADRGGAKAILEC----IKNARQPIVLIAND--------------- 136
Query: 318 ELQSILVDAGAR--KVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQA 375
L + + R V + SI L IC E+ + S + +A+++ GD+R A
Sbjct: 137 -LYGLAAELRLRCEPVQFRALPARSIAPRLKYICSSEKIACSESAVHEIAESAEGDMRSA 195
Query: 376 ITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435
+ L S++ + + DG + Q +DE +S+F +L + K
Sbjct: 196 VNMLYASAIGRQSL-----------------DGKNVHTSQ--KDERVSIF-SLVTAVFGK 235
Query: 436 RETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDA 495
+ L+++ +D D+F PE + G + D L + S
Sbjct: 236 TSDEELIRLSRDV----DEF---------PEDIEQWVEGSVHTITDPAGLG-LAYRS--- 278
Query: 496 IDDAWAVASYLSDADLLLA-SFRGR---LVRYNEADNVLQSAAASVAARGVLFGNSHPVP 551
LS AD + ++R + L RY A +L A AS A +G+ +S +P
Sbjct: 279 ----------LSRADEYIGYTYRRQYHTLWRYATAVMLLGVADAS-AGKGI---HSRILP 324
Query: 552 P-RWH---------AIRKPKLWRVDQSSLQKKKELLKKKFM 582
P RW AIR L R+ +++Q + L++K+M
Sbjct: 325 PERWQKMSVAKKQKAIRAAVLSRL-AATMQLPQATLREKYM 364
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 47/246 (19%)
Query: 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVR 196
++W EKY+P+SL E+ + + +++++++ E++ L+ G G GKT+T
Sbjct: 3 EIWTEKYRPKSLSEIYGEDENIQKLKSFVEKK--------EIPHLLFAGSVGTGKTSTAI 54
Query: 197 QIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256
+A L D+ W+E M E + +D N ++ I R PS P
Sbjct: 55 ALAIELFG-----DS-----WKENMVEMNASNE--NGIDVIRNKIKDIAR---IKPSNPL 99
Query: 257 ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316
K IL +D+ A LR+ + + +T + C + + QS
Sbjct: 100 GFK---ILFLDEADQLTAE-AQAALRRTMEIYSETTRF-----IFSCNYSSKIIPPIQS- 149
Query: 317 EELQSILVDAGARKVAL--NPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
R V + P+ + I R L +I + E + + E + + + S GD+R+
Sbjct: 150 ------------RTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRK 197
Query: 375 AITSLQ 380
AI LQ
Sbjct: 198 AINVLQ 203
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum
GN=rfc1 PE=3 SV=1
Length = 1401
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 29/251 (11%)
Query: 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEE-RLGDSKDKFSTNVLVITGQAGVGKTATVR 196
LW EKY+P+ +E++ +E W ++ +D N ++++G G+GKT+
Sbjct: 850 LWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAAL 909
Query: 197 QIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS----P 252
I G E + E + +G+ + +F +G+T+
Sbjct: 910 LICKQKGFEAIELNASDARSKSE-IKRLLSGVSDNQNITKF---------FGTTNQDTGK 959
Query: 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312
+ K +++D++ ++G + + + ++ L++ + +P + C D
Sbjct: 960 DVQANKKIKTAIILDEIDGSSGNSDRGGIAE-IIGLIKKSKMP---FICLCN-----DYY 1010
Query: 313 AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDI 372
+ L++ +D RK LN +++ R L+ I + E +S+ I+ V +S DI
Sbjct: 1011 SSKVTSLRNHCMDLKLRKPTLNQVSS----RLLA-IAKHEGMKVSSYMIEKVYTSSHSDI 1065
Query: 373 RQAITSLQFSS 383
RQ+I +LQ S
Sbjct: 1066 RQSINTLQMMS 1076
>sp|Q9UWR2|RFCL_PYRFU Replication factor C large subunit OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcL PE=1
SV=1
Length = 479
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 92/242 (38%), Gaps = 45/242 (18%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+ L E+ Q + +E+VRAW E L K L++ G G GKT TV +
Sbjct: 6 WVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPK--KKALLLAGPPGSGKTTTVYAL 63
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ + E + E E+I RY + ++
Sbjct: 64 ANEYNFEVIELNASD------------------------ERTYEKISRYVQAAYTMDILG 99
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
K I+ +D+ A E + L+ P ++ K V + E
Sbjct: 100 KRRKIIFLDEADNIEPSGAKE-----IAKLIDKAKNP---IIMAANKYWEVPKEIREKAE 151
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L V +T + L +I ++E ++ E + +A+ S GD+R AI
Sbjct: 152 L-----------VEYKRLTQRDVMNALIRILKREGITVPKEILLEIAKRSSGDLRAAIND 200
Query: 379 LQ 380
LQ
Sbjct: 201 LQ 202
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 51/248 (20%)
Query: 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNV--LVITGQAGVGKTAT 194
++W EKY+PR+L+E+ Q + ++ ++ + E + N+ L+ +G G GKTAT
Sbjct: 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERK----------NIPHLLFSGPPGTGKTAT 54
Query: 195 VRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDE--FENFVERIRRYGSTSP 252
+A L + N + + DE + +I+ + T+P
Sbjct: 55 AIALARDL-----------------FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97
Query: 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312
I G L D + + A LR+ + + +S C S +
Sbjct: 98 -IGGAPFKIIFLDEADALTADAQAA---LRRTMEMYSKS-----------CRFILSCNYV 142
Query: 313 AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDI 372
++ E +QS P+ ++K+ L +IC +E ++ + ++ + SGGD
Sbjct: 143 SRIIEPIQS-----RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197
Query: 373 RQAITSLQ 380
R+AI +LQ
Sbjct: 198 RKAINALQ 205
>sp|A2SQR6|RFCL_METLZ Replication factor C large subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcL PE=3 SV=1
Length = 476
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 44/245 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
WAEKY+P L ++ V ++ W + DS+ L+ TG+ G+GKT+ +
Sbjct: 3 WAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRP------LLFTGKPGIGKTSAALAL 56
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A R +W+ LE + + +ER+ ST+ S+ G
Sbjct: 57 A-----RDMDWEV----------------LELNASDARTKTIIERVAGNSSTTTSLFGAG 95
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ +++ID++ G R +L + + G +DS+
Sbjct: 96 RK--LIIIDEVDNLEGNADRGGARAIADILKEAKQPIVLIANDAYGVSDSIRR------- 146
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L D V I ++++ + +ICR E + + + +A++S GD+R A+
Sbjct: 147 ----LCDP----VPFRAIGVSTLQKRMKEICRFEDIACGEDALSAIAESSAGDMRTAVNM 198
Query: 379 LQFSS 383
L SS
Sbjct: 199 LFGSS 203
>sp|A9A6N2|RFCL_METM6 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcL PE=3 SV=1
Length = 484
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++A K E + W E + K K +++ G G GKT I
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKETLIEWIESFVSGQKQK----PILLAGPPGSGKTTLAYAI 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A Y +D +E + ++ + ++ +TS SI G
Sbjct: 60 AKD-----YAYDV----------------IELNASDKRNKDVISQVVGTAATSKSITGRR 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ +D L + R + + L ++ P V+LT A+ V A
Sbjct: 99 TLIVLDEVDGLSGNDDRGGVAEIIKVL----KTAENP--VILT----ANDVYKPALMTLR 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ G+ + SI L KI +E + + + I +A +GGD+R AI
Sbjct: 149 NNVNLINVGS-------VHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAIND 201
Query: 379 LQ 380
LQ
Sbjct: 202 LQ 203
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 55/258 (21%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAW----------FEERLGDSKDK--FSTNVLVITGQ 186
W EKY+P+S E+ Q + + + +W F R +DK +++ G
Sbjct: 5 WVEKYRPKSFSEIVNQEEAKQILASWICTRFKAPQEFCARWAKRRDKEIKEARAVLLWGP 64
Query: 187 AGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRR 246
G+GKT V +A +G L E + + +TG ERIR+
Sbjct: 65 PGIGKTTLVHALAKEIGYELVELNA----------SDVRTG--------------ERIRQ 100
Query: 247 Y---GSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303
G S+ G + I+L D++ + + L + +L L+ + +P +VLT
Sbjct: 101 VVGRGLREASLFG--YAGKIVLFDEVDGLHVKEDLGGL-EAILNLIETAKVP--IVLT-- 153
Query: 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363
+ D + ++ + V L ++ + L +IC E E +
Sbjct: 154 -ANNPFDPKLRPLRDISLV--------VGLKRLSEDEVVEVLKRICASEGAKCEEEALRS 204
Query: 364 VAQASGGDIRQAITSLQF 381
+A++S GD+R AI LQ
Sbjct: 205 LAKSSYGDLRAAINDLQL 222
>sp|A4FZL6|RFCL_METM5 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcL PE=3 SV=1
Length = 484
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 46/244 (18%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++A K + + W E + K K +++ G G GKT
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALINWIESFVNGQKQK----PILLAGPPGSGKTTL---- 55
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
+H A+ Y +D +E + ++ + ++ +TS S+ G
Sbjct: 56 -AHAIAKDYAFDV----------------IELNASDKRNKDVIAQVVGTAATSKSLTG-- 96
Query: 259 KSSAILL--IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316
K + I+L +D L + R + + L ++ P V+LT A+ V A
Sbjct: 97 KRTLIVLDEVDGLSGNDDRGGVAEIIKVL----KTAENP--VILT----ANDVYKPALMT 146
Query: 317 EELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376
L++ G+ + SI L KI +E + + + I +A SGGD+R AI
Sbjct: 147 LRNNVNLINVGS-------VHTNSIPPVLRKIALKEGFEIDEKVIKTIASHSGGDLRAAI 199
Query: 377 TSLQ 380
LQ
Sbjct: 200 NDLQ 203
>sp|O57853|RFCL_PYRHO Replication factor C large subunit OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rfcL PE=3 SV=1
Length = 468
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 45/242 (18%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+PR L E+ Q + +E+VRAW E L + K L++ G G GKT TV +
Sbjct: 6 WIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPK--KKALLLAGPPGSGKTTTVYAL 63
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A + E + E +I RY + ++
Sbjct: 64 AHEYNFEVIELNASD------------------------ERTYNKIARYVQAAYTMDIMG 99
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
K I+ +D+ N + + P L + + + + A + E
Sbjct: 100 KRRKIIFLDE--ADN---------------IEPSGAPEIAKLIDKAR-NPIIMAANHYWE 141
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
+ + D A V + + L +I ++E ++ E + +A+ S GD+R AI
Sbjct: 142 VPKEIRDR-AELVEYKRLNQRDVISALVRILKREGITVPKEILTEIAKRSSGDLRAAIND 200
Query: 379 LQ 380
LQ
Sbjct: 201 LQ 202
>sp|A6VIW1|RFCL_METM7 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcL PE=3 SV=1
Length = 482
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 46/244 (18%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++A K E + W E + K K +++ G G GKT I
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKESLIEWIESFINGQKQK----PILLAGPPGSGKTTLAYAI 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A Y +D +E + ++ + ++ +TS S+ G
Sbjct: 60 AKD-----YAFDV----------------IELNASDKRNKDVISQVVGTAATSKSLTG-- 96
Query: 259 KSSAILL--IDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316
K + I+L +D L + R + + L ++ P V+LT A+ V A
Sbjct: 97 KRTLIVLDEVDGLSGNDDRGGVAEIIKVL----KTAENP--VILT----ANDVYKPALMT 146
Query: 317 EELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376
L++ G+ + SI L KI +E + + + I +A +GGD+R AI
Sbjct: 147 LRNSVNLINVGS-------VHTNSIPPVLRKIALKEGFEIDEKVIKTIASHAGGDLRAAI 199
Query: 377 TSLQ 380
LQ
Sbjct: 200 NDLQ 203
>sp|Q6M0E9|RFCL_METMP Replication factor C large subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcL PE=3 SV=1
Length = 486
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 42/242 (17%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+SL ++A K + + W E +G K +++ G G GKT I
Sbjct: 4 WVEKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQK----PILLAGPPGSGKTTLAYAI 59
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ Y +D +E + ++ + ++ +TS S+ G
Sbjct: 60 AND-----YAFDV----------------IELNASDKRNKDVISQVVGTAATSKSLTGRR 98
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ +D L + R + + L ++ P V+LT A+ V A
Sbjct: 99 TLIVLDEVDGLSGNDDRGGVAEIIKVL----KTAENP--VILT----ANDVYKPALMTLR 148
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L++ G+ + SI L +I +E + + + I ++A SGGD+R AI
Sbjct: 149 NSVNLINVGS-------VHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAIND 201
Query: 379 LQ 380
LQ
Sbjct: 202 LQ 203
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc1 PE=1 SV=1
Length = 934
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 113/263 (42%), Gaps = 37/263 (14%)
Query: 127 DSASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFST-------- 178
DS S Q+W KY P SL+++ + V++++ W ++ + K F+
Sbjct: 349 DSNKKESQPSQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGL 408
Query: 179 -NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEF 237
++++G G+GKT A+HL A+L +D + + + ++ +L
Sbjct: 409 YKAVLLSGPPGIGKTT-----AAHLVAKLEGYD-----VLELNASDTRSKRLLDEQLFGV 458
Query: 238 ENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL-LLVRSTHIPT 296
+ + + Y T + +KS +L++D++ +G ++ +R L ++++ + IP
Sbjct: 459 TD-SQSLAGYFGTKANPVDMAKSRLVLIMDEI---DGMSSGDRGGVGQLNMIIKKSMIP- 513
Query: 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL 356
++ C D L D R+ N S++ + I +E L
Sbjct: 514 --IICICN-----DRAHPKLRPLDRTTFDLRFRRPDAN-----SMRSRIMSIAYREGLKL 561
Query: 357 STEQIDLVAQASGGDIRQAITSL 379
S + +D + Q + D+RQ I L
Sbjct: 562 SPQAVDQLVQGTQSDMRQIINLL 584
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 55/273 (20%)
Query: 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNV--LVITGQAGVGKT 192
+ +W EKY+P L ++ Q VE + ++ + S N+ L+ TG AGVGKT
Sbjct: 4 SHTIWIEKYRPAKLADIVGQDDIVERLSSYVK----------SGNLPHLLFTGSAGVGKT 53
Query: 193 ATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252
A+ AR + D+ WQ E +D N +I+ + T P
Sbjct: 54 T-----AAVTLAREFFGDS-----WQMNFRELNASDE--RGIDVVRN---QIKEFARTRP 98
Query: 253 SIPGESKSSAILLID--DLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVD 310
+ K IL +D D T+ + A R + ++ T + C + +
Sbjct: 99 AGDAAFK---ILFLDEADALTTDAQAALRRTME--------SYAKTCRFILSCNYSSKII 147
Query: 311 STAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370
QS + P+ ++K +++I +E ++ E +D + + G
Sbjct: 148 DPIQSRCAIYR-----------FRPLGPQAVKEEITRIAAREHLDVTPEAMDAMVYIAQG 196
Query: 371 DIRQAITSLQ----FSSLKQDPMLNLSLSISKP 399
D+R+AI +LQ S+ + PM+ S ++P
Sbjct: 197 DMRKAINALQGAAILSATIEAPMVYAITSNARP 229
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 115/274 (41%), Gaps = 48/274 (17%)
Query: 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVR 196
++W EKY+P++L E+ Q+ VE +R++ + + L+ TG AGVGKT
Sbjct: 6 EIWIEKYRPKNLAEVVGQQDVVERLRSYVATK--------ALPHLLFTGSAGVGKTTCAV 57
Query: 197 QIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256
+A + + + ++E + + G++ +I+++ T+P
Sbjct: 58 ALAREMFGDTWNMN------FRELNASDERGIDVVRN---------QIKQFARTAPLGDA 102
Query: 257 ESKSSAILLID--DLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQ 314
K IL +D D + + A R + + T + C + + Q
Sbjct: 103 TFK---ILFLDEADALTQDAQAALRRTME--------NYAETCRFILSCNYSSKIIDPIQ 151
Query: 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
S + P+T+ +I +++I ++E ++ + S GD+R+
Sbjct: 152 SRCAIYR-----------FRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRK 200
Query: 375 AITSLQFSSLKQDPMLNLSL-SISKPNFPEEKAD 407
AI +LQ +++ D + ++ +I+ P+E D
Sbjct: 201 AINALQGAAIVSDHVTAENIYAITSNAKPQEITD 234
>sp|Q3ISA5|RFCL_NATPD Replication factor C large subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcL PE=3 SV=1
Length = 483
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 53/246 (21%)
Query: 139 WAEKYKPRSLEELAVQ---RKKVEE-VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194
W E Y+P +L E+ R EE +AW + R +++ G GVGKT+
Sbjct: 4 WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDHR----------EAVILHGSPGVGKTSA 53
Query: 195 VRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254
+A+ +G + E + + +T DE E F R +++ ++
Sbjct: 54 AHALANDMGWPVLEMNAS----------DART-------KDEIERFAGR----AASNATL 92
Query: 255 PGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQ 314
G + + D+L R + LV+ P ++ A
Sbjct: 93 GGGRQLIILDEADNLHQHKDRGGA----AAMTRLVKDATQPVVLI-------------AN 135
Query: 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374
+ E+ S L A R V ++ SI L ICRQE + + +A+A+ GD+R
Sbjct: 136 DYYEMSSGLRSA-CRDVEFRDVSARSIVPVLRDICRQENVEFDEDVLQEIAEANRGDLRG 194
Query: 375 AITSLQ 380
A+ LQ
Sbjct: 195 AVKDLQ 200
>sp|Q18GQ9|RFCL_HALWD Replication factor C large subunit OS=Haloquadratum walsbyi (strain
DSM 16790) GN=rfcL PE=3 SV=1
Length = 516
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 40/243 (16%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W E+Y+P +L + +E W E S D +V V+ G GVGKT+ +
Sbjct: 4 WTERYRPTTLSAVRGNNAARDEFIEWAE-----SWDDHHESV-VLHGAPGVGKTSAAHAL 57
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
AS +G W+ N + TS D E R + + + ++ G +
Sbjct: 58 ASDMG-------------WETVELNASD--QRTS--DVIERLAGRAAKNATLAGAVSGTT 100
Query: 259 KSSAILLIDDLPVTNGRTAFERL-RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFE 317
+ ++++D+ N ++R +Q + L++ + P ++ E +
Sbjct: 101 STRQLIIMDE--ADNIHYQYDRGGKQAVTTLLKDANQPIVLIANE-------------YY 145
Query: 318 ELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377
++ L +A A+ + I+ SI L I R+E + +A+ + GD+R AI
Sbjct: 146 DMSRGLRNA-AQDIEFRDISARSIVPVLRNILRKENIEFEEAALKQIAEVNSGDLRAAIK 204
Query: 378 SLQ 380
LQ
Sbjct: 205 DLQ 207
>sp|A3CTR4|RFCL_METMJ Replication factor C large subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcL PE=3 SV=1
Length = 454
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 123/306 (40%), Gaps = 64/306 (20%)
Query: 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI 198
W EKY+P+ L+++ V + W + S+ K L++ G+ G GKT++ +
Sbjct: 3 WVEKYRPQHLQDVVGNSGAVRLIYEWARDW---SRQK---KPLILYGKPGTGKTSSAYAL 56
Query: 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258
A+ + W+ +E + + +ER+ GST+ S+ G S
Sbjct: 57 ANDM-----NWEV----------------VELNASDQRTKAALERVAGAGSTTASLSGAS 95
Query: 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE 318
+ ++L+D+ +G+ A + ++ ++ + P ++ A +
Sbjct: 96 RK--LILLDEADNLHGQ-ADRGGAKAIVEIIAAAQQPIILI-------------ANDYYS 139
Query: 319 LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378
L L A V + SI L +IC E + +D +A +GGD+R A+
Sbjct: 140 LTREL-KAVTEPVQFRALQARSIVPRLRQICAAEGVACDPAALDDIANRAGGDMRAAVNM 198
Query: 379 LQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRET 438
L +++ ++ + + S +DE ++F +G KR+
Sbjct: 199 LYAAAIGKEHLAAGDVHTS-------------------AKDERSTIFELVGATFKGKRDA 239
Query: 439 DNLVKM 444
D L++M
Sbjct: 240 D-LLRM 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,101,560
Number of Sequences: 539616
Number of extensions: 10351097
Number of successful extensions: 26952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 26685
Number of HSP's gapped (non-prelim): 290
length of query: 666
length of database: 191,569,459
effective HSP length: 124
effective length of query: 542
effective length of database: 124,657,075
effective search space: 67564134650
effective search space used: 67564134650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)