Query 005987
Match_columns 666
No_of_seqs 474 out of 1971
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03215 Rad17: Rad17 cell cyc 100.0 6.4E-68 1.4E-72 588.4 37.3 451 135-617 5-496 (519)
2 KOG1970 Checkpoint RAD17-RFC c 100.0 4E-66 8.6E-71 550.7 28.6 520 77-621 17-608 (634)
3 TIGR00602 rad24 checkpoint pro 100.0 5.4E-57 1.2E-61 508.9 27.2 509 73-617 9-555 (637)
4 PRK04195 replication factor C 100.0 3.5E-46 7.6E-51 417.7 32.8 380 137-619 2-381 (482)
5 KOG1969 DNA replication checkp 100.0 1.2E-40 2.6E-45 364.7 32.0 399 136-618 258-706 (877)
6 KOG0989 Replication factor C, 100.0 3.3E-30 7E-35 259.8 18.4 208 136-387 23-239 (346)
7 KOG0991 Replication factor C, 100.0 2E-29 4.4E-34 244.0 14.4 206 135-387 13-223 (333)
8 PLN03025 replication factor C 100.0 1.3E-26 2.8E-31 247.0 25.7 286 137-514 1-293 (319)
9 PRK14956 DNA polymerase III su 99.9 1.2E-25 2.7E-30 245.3 22.1 215 136-382 5-226 (484)
10 PRK07003 DNA polymerase III su 99.9 1.3E-25 2.7E-30 253.0 21.3 214 136-384 3-227 (830)
11 PRK14960 DNA polymerase III su 99.9 6E-25 1.3E-29 245.5 21.8 247 137-435 3-259 (702)
12 PRK14958 DNA polymerase III su 99.9 3.2E-24 6.9E-29 240.1 21.3 214 136-383 3-225 (509)
13 KOG1968 Replication factor C, 99.9 1.1E-24 2.5E-29 252.5 17.8 398 136-616 307-721 (871)
14 COG2256 MGS1 ATPase related to 99.9 4.2E-24 9.2E-29 223.1 19.5 200 137-387 12-221 (436)
15 PRK14949 DNA polymerase III su 99.9 6.5E-24 1.4E-28 243.5 22.4 213 136-382 3-224 (944)
16 PRK12323 DNA polymerase III su 99.9 3.1E-24 6.7E-29 239.3 18.5 213 136-381 3-228 (700)
17 PRK14964 DNA polymerase III su 99.9 2E-23 4.3E-28 230.5 22.2 198 138-384 2-223 (491)
18 PRK14962 DNA polymerase III su 99.9 2.3E-23 5.1E-28 230.9 21.9 199 137-384 2-224 (472)
19 PRK14952 DNA polymerase III su 99.9 4E-23 8.7E-28 233.1 24.0 214 138-385 2-226 (584)
20 PRK00440 rfc replication facto 99.9 1.4E-22 3.1E-27 215.4 26.3 289 135-514 3-297 (319)
21 PRK12402 replication factor C 99.9 8.5E-23 1.8E-27 219.0 24.6 303 136-514 2-320 (337)
22 PRK06645 DNA polymerase III su 99.9 9.1E-23 2E-27 227.0 24.4 218 135-384 7-235 (507)
23 PRK08691 DNA polymerase III su 99.9 2.9E-23 6.3E-28 234.2 20.2 217 136-384 3-226 (709)
24 PRK14957 DNA polymerase III su 99.9 7.2E-23 1.6E-27 229.1 22.7 214 136-384 3-226 (546)
25 PRK07994 DNA polymerase III su 99.9 5.1E-23 1.1E-27 233.4 21.6 213 136-382 3-224 (647)
26 PRK14961 DNA polymerase III su 99.9 1.1E-22 2.4E-27 220.2 22.6 217 136-384 3-226 (363)
27 PRK14951 DNA polymerase III su 99.9 6.5E-23 1.4E-27 232.2 21.6 217 136-384 3-232 (618)
28 PRK14963 DNA polymerase III su 99.9 2.1E-22 4.6E-27 225.0 23.8 215 138-385 4-224 (504)
29 PRK05896 DNA polymerase III su 99.9 1.5E-22 3.3E-27 226.5 21.8 215 136-385 3-227 (605)
30 PHA02544 44 clamp loader, smal 99.9 6.9E-22 1.5E-26 210.4 25.9 279 135-515 7-294 (316)
31 PRK07764 DNA polymerase III su 99.9 2E-22 4.3E-27 235.4 23.4 215 137-385 3-228 (824)
32 PRK08451 DNA polymerase III su 99.9 3.6E-22 7.8E-27 222.4 23.6 199 137-384 2-224 (535)
33 PRK14959 DNA polymerase III su 99.9 3.7E-22 7.9E-27 224.5 22.0 214 136-383 3-225 (624)
34 PRK14969 DNA polymerase III su 99.9 3.3E-22 7.1E-27 225.3 20.0 217 136-384 3-226 (527)
35 PRK07133 DNA polymerase III su 99.9 8.5E-22 1.9E-26 224.5 22.9 215 136-384 5-225 (725)
36 PRK05563 DNA polymerase III su 99.9 7.4E-22 1.6E-26 223.9 22.3 214 137-384 4-226 (559)
37 PRK09111 DNA polymerase III su 99.9 7.8E-22 1.7E-26 223.8 21.6 217 136-384 11-239 (598)
38 KOG2035 Replication factor C, 99.9 1.6E-21 3.5E-26 193.9 20.5 220 137-387 1-237 (351)
39 PRK14953 DNA polymerase III su 99.9 1.7E-21 3.7E-26 217.0 22.9 214 136-384 3-226 (486)
40 PRK14965 DNA polymerase III su 99.9 1.4E-21 3E-26 222.7 21.3 214 137-383 4-225 (576)
41 TIGR02397 dnaX_nterm DNA polym 99.9 4.4E-21 9.4E-26 207.4 23.3 216 137-385 2-225 (355)
42 PRK14970 DNA polymerase III su 99.9 6.4E-21 1.4E-25 207.2 22.2 212 136-384 4-215 (367)
43 PRK14948 DNA polymerase III su 99.9 8.4E-21 1.8E-25 216.8 23.4 218 136-385 3-229 (620)
44 PRK06305 DNA polymerase III su 99.9 6.2E-21 1.3E-25 211.3 21.6 216 136-384 4-228 (451)
45 PF05496 RuvB_N: Holliday junc 99.9 2.4E-21 5.2E-26 191.0 16.3 200 135-383 10-226 (233)
46 PRK14971 DNA polymerase III su 99.9 7.8E-21 1.7E-25 217.1 22.5 215 136-383 4-227 (614)
47 PRK14955 DNA polymerase III su 99.9 6.9E-21 1.5E-25 208.6 20.5 216 137-384 4-234 (397)
48 PRK14950 DNA polymerase III su 99.9 1.1E-20 2.3E-25 216.3 22.9 215 137-384 4-227 (585)
49 PRK14954 DNA polymerase III su 99.9 1.6E-20 3.4E-25 213.5 22.6 216 137-384 4-234 (620)
50 PRK13342 recombination factor 99.9 1.5E-20 3.2E-25 207.2 21.4 197 138-385 1-203 (413)
51 PRK06647 DNA polymerase III su 99.9 2.2E-20 4.8E-25 211.1 23.0 213 137-384 4-226 (563)
52 KOG2028 ATPase related to the 99.9 4E-21 8.7E-26 197.0 14.9 199 136-382 125-340 (554)
53 COG2812 DnaX DNA polymerase II 99.8 1.1E-20 2.4E-25 208.0 16.1 215 137-385 4-228 (515)
54 PRK13341 recombination factor 99.8 4.7E-20 1E-24 213.3 21.2 199 136-384 15-223 (725)
55 KOG0990 Replication factor C, 99.8 3.7E-21 8.1E-26 195.4 9.4 207 134-385 26-239 (360)
56 PRK00080 ruvB Holliday junctio 99.8 1.7E-18 3.7E-23 185.4 20.6 203 135-382 11-226 (328)
57 PRK04132 replication factor C 99.8 1.4E-17 3E-22 193.7 21.8 250 180-514 566-825 (846)
58 TIGR00635 ruvB Holliday juncti 99.7 2.3E-16 5E-21 167.1 20.0 192 146-383 1-206 (305)
59 PTZ00112 origin recognition co 99.7 4.1E-16 8.9E-21 176.9 21.3 218 138-384 747-987 (1164)
60 COG2255 RuvB Holliday junction 99.7 3.7E-16 8E-21 157.0 17.8 194 139-381 16-226 (332)
61 COG0470 HolB ATPase involved i 99.7 1.6E-16 3.5E-21 169.2 13.2 199 149-436 1-225 (325)
62 PRK06893 DNA replication initi 99.7 2.3E-15 5E-20 152.9 19.5 194 144-383 11-208 (229)
63 PRK09112 DNA polymerase III su 99.7 3.7E-15 8E-20 160.0 21.7 205 142-381 16-243 (351)
64 PRK08084 DNA replication initi 99.7 8.1E-15 1.8E-19 149.5 21.7 189 147-383 20-214 (235)
65 TIGR02881 spore_V_K stage V sp 99.7 4.5E-15 9.7E-20 153.9 19.7 206 147-384 4-236 (261)
66 TIGR02902 spore_lonB ATP-depen 99.7 1.6E-15 3.4E-20 171.7 16.8 221 136-384 52-310 (531)
67 PRK08727 hypothetical protein; 99.6 1.5E-14 3.2E-19 147.4 21.9 189 146-383 16-209 (233)
68 PRK07940 DNA polymerase III su 99.6 1.2E-14 2.6E-19 158.1 20.4 202 147-379 3-214 (394)
69 KOG0733 Nuclear AAA ATPase (VC 99.6 1.1E-14 2.4E-19 158.5 18.3 200 147-379 188-403 (802)
70 PRK06620 hypothetical protein; 99.6 4.7E-14 1E-18 141.6 21.1 188 137-383 7-194 (214)
71 TIGR02928 orc1/cdc6 family rep 99.6 1.9E-14 4.2E-19 156.2 18.7 220 137-384 6-252 (365)
72 COG1223 Predicted ATPase (AAA+ 99.6 6.5E-15 1.4E-19 145.8 13.4 199 140-374 112-325 (368)
73 COG1222 RPT1 ATP-dependent 26S 99.6 1.8E-14 3.8E-19 149.2 15.7 213 137-385 139-374 (406)
74 PRK07471 DNA polymerase III su 99.6 3.7E-14 8E-19 153.1 18.7 201 143-380 13-240 (365)
75 PRK00411 cdc6 cell division co 99.6 6.4E-14 1.4E-18 153.7 20.6 218 137-383 21-259 (394)
76 PRK05642 DNA replication initi 99.6 1.4E-13 3.1E-18 140.3 20.7 193 147-383 17-213 (234)
77 PRK08903 DnaA regulatory inact 99.6 2.2E-13 4.7E-18 138.2 21.9 187 144-383 13-204 (227)
78 PRK07399 DNA polymerase III su 99.6 1.2E-13 2.5E-18 146.4 20.1 200 147-382 2-225 (314)
79 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.8E-13 3.9E-18 138.4 19.9 189 145-382 11-205 (226)
80 PRK05564 DNA polymerase III su 99.5 3.7E-13 8.1E-18 143.2 19.8 189 147-378 2-190 (313)
81 CHL00181 cbbX CbbX; Provisiona 99.5 8.5E-13 1.8E-17 138.3 20.4 204 150-385 24-253 (287)
82 CHL00195 ycf46 Ycf46; Provisio 99.5 3.7E-13 7.9E-18 150.0 18.6 205 145-383 224-444 (489)
83 TIGR02880 cbbX_cfxQ probable R 99.5 9.2E-13 2E-17 138.0 20.6 204 150-385 23-252 (284)
84 COG1474 CDC6 Cdc6-related prot 99.5 7.8E-13 1.7E-17 142.6 20.4 213 139-385 10-244 (366)
85 PRK09087 hypothetical protein; 99.5 6.8E-13 1.5E-17 134.4 18.7 176 147-380 19-197 (226)
86 KOG0733 Nuclear AAA ATPase (VC 99.5 2.3E-13 4.9E-18 148.4 15.7 247 90-384 464-734 (802)
87 PRK00149 dnaA chromosomal repl 99.5 8.5E-13 1.8E-17 147.3 20.6 197 147-381 120-325 (450)
88 PF00308 Bac_DnaA: Bacterial d 99.5 1.5E-12 3.3E-17 131.3 20.3 198 147-382 6-212 (219)
89 TIGR02639 ClpA ATP-dependent C 99.5 2.7E-13 5.9E-18 159.5 17.3 211 135-384 168-403 (731)
90 PTZ00361 26 proteosome regulat 99.5 2.4E-13 5.2E-18 149.3 15.5 214 136-384 170-405 (438)
91 CHL00176 ftsH cell division pr 99.5 8.2E-13 1.8E-17 151.6 19.9 205 145-384 179-404 (638)
92 TIGR01241 FtsH_fam ATP-depende 99.5 3.4E-13 7.4E-18 152.3 16.5 211 137-383 43-275 (495)
93 TIGR02903 spore_lon_C ATP-depe 99.5 1.1E-12 2.4E-17 150.9 20.7 224 136-383 141-399 (615)
94 TIGR00678 holB DNA polymerase 99.5 1.7E-12 3.7E-17 127.8 18.4 169 174-375 11-188 (188)
95 TIGR00362 DnaA chromosomal rep 99.5 2.2E-12 4.8E-17 142.2 20.9 173 179-383 137-318 (405)
96 PRK14087 dnaA chromosomal repl 99.5 1.4E-12 3.1E-17 144.8 19.1 202 145-382 111-323 (450)
97 KOG0730 AAA+-type ATPase [Post 99.5 5.7E-13 1.2E-17 147.3 15.6 209 142-385 427-654 (693)
98 PTZ00454 26S protease regulato 99.5 9.6E-13 2.1E-17 143.6 17.0 210 140-384 136-367 (398)
99 TIGR03345 VI_ClpV1 type VI sec 99.5 5.9E-13 1.3E-17 158.0 16.4 212 135-384 173-408 (852)
100 PRK12422 chromosomal replicati 99.4 5.8E-12 1.3E-16 139.5 20.5 204 146-383 108-318 (445)
101 PRK14088 dnaA chromosomal repl 99.4 5.1E-12 1.1E-16 140.2 19.7 197 147-381 103-308 (440)
102 PRK03992 proteasome-activating 99.4 2.4E-12 5.2E-17 140.8 16.8 206 144-384 126-353 (389)
103 PLN00020 ribulose bisphosphate 99.4 5.8E-12 1.3E-16 132.7 17.4 164 176-370 146-330 (413)
104 KOG0738 AAA+-type ATPase [Post 99.4 5.1E-12 1.1E-16 131.8 15.7 202 146-384 209-433 (491)
105 TIGR03689 pup_AAA proteasome A 99.4 7.3E-12 1.6E-16 139.6 17.8 194 136-357 169-385 (512)
106 PRK14086 dnaA chromosomal repl 99.4 1.7E-11 3.7E-16 138.2 20.2 199 146-382 285-492 (617)
107 TIGR01242 26Sp45 26S proteasom 99.4 8.8E-12 1.9E-16 135.5 16.6 210 140-384 113-344 (364)
108 TIGR03346 chaperone_ClpB ATP-d 99.4 7.7E-12 1.7E-16 149.4 16.8 213 135-385 159-395 (852)
109 CHL00095 clpC Clp protease ATP 99.4 4.3E-12 9.2E-17 151.2 14.6 210 137-385 167-400 (821)
110 KOG0734 AAA+-type ATPase conta 99.4 1.2E-11 2.7E-16 133.1 16.4 208 141-384 296-522 (752)
111 PRK08058 DNA polymerase III su 99.3 3.5E-11 7.5E-16 128.9 19.0 194 147-379 3-205 (329)
112 TIGR01243 CDC48 AAA family ATP 99.3 2.3E-11 4.9E-16 143.7 17.6 203 145-383 449-672 (733)
113 PF06068 TIP49: TIP49 C-termin 99.3 6.8E-11 1.5E-15 124.4 18.2 114 261-383 279-396 (398)
114 PF05673 DUF815: Protein of un 99.3 3.1E-10 6.8E-15 114.0 22.1 205 141-382 19-245 (249)
115 PRK10865 protein disaggregatio 99.3 1.5E-11 3.2E-16 146.5 14.7 214 135-386 164-401 (857)
116 KOG0731 AAA+-type ATPase conta 99.3 2.5E-11 5.5E-16 138.2 15.4 207 144-385 306-535 (774)
117 PRK05707 DNA polymerase III su 99.3 1.4E-10 3E-15 123.7 20.1 176 174-379 19-204 (328)
118 TIGR00763 lon ATP-dependent pr 99.3 4.3E-11 9.4E-16 141.8 17.4 187 150-367 321-533 (775)
119 COG0593 DnaA ATPase involved i 99.3 1.5E-10 3.3E-15 124.8 19.6 206 139-383 80-291 (408)
120 KOG0743 AAA+-type ATPase [Post 99.3 8.5E-11 1.8E-15 125.9 16.6 166 143-351 195-385 (457)
121 KOG0737 AAA+-type ATPase [Post 99.3 6.9E-11 1.5E-15 123.4 14.9 191 147-371 90-295 (386)
122 TIGR01243 CDC48 AAA family ATP 99.3 1.1E-10 2.4E-15 137.9 18.2 194 144-373 173-382 (733)
123 PF00004 AAA: ATPase family as 99.2 8E-11 1.7E-15 108.0 12.8 100 181-302 1-109 (132)
124 COG0464 SpoVK ATPases of the A 99.2 1.6E-10 3.4E-15 130.8 17.6 191 146-370 239-445 (494)
125 KOG0736 Peroxisome assembly fa 99.2 1.6E-10 3.5E-15 129.4 16.5 202 147-384 670-896 (953)
126 PRK10733 hflB ATP-dependent me 99.2 2.1E-10 4.6E-15 133.0 18.2 214 137-386 140-375 (644)
127 PRK07993 DNA polymerase III su 99.2 3.2E-10 6.9E-15 121.3 18.1 189 155-380 8-206 (334)
128 KOG0727 26S proteasome regulat 99.2 9E-11 1.9E-15 116.1 12.4 203 146-384 152-377 (408)
129 PRK06871 DNA polymerase III su 99.2 7.7E-10 1.7E-14 117.4 20.2 187 154-379 7-204 (325)
130 PRK11034 clpA ATP-dependent Cl 99.2 1.6E-10 3.4E-15 135.2 16.1 209 137-384 174-407 (758)
131 PRK08769 DNA polymerase III su 99.2 2.4E-10 5.1E-15 121.1 16.0 185 154-379 9-209 (319)
132 KOG2227 Pre-initiation complex 99.2 1.6E-10 3.5E-15 123.6 13.5 218 136-380 140-373 (529)
133 COG1224 TIP49 DNA helicase TIP 99.2 6.2E-10 1.3E-14 115.4 17.3 111 261-380 292-406 (450)
134 KOG0728 26S proteasome regulat 99.2 1.4E-10 3E-15 114.6 11.9 183 136-353 134-335 (404)
135 TIGR03345 VI_ClpV1 type VI sec 99.2 9.5E-10 2.1E-14 130.9 19.4 212 149-383 566-827 (852)
136 KOG0739 AAA+-type ATPase [Post 99.2 3.6E-10 7.7E-15 114.4 13.3 191 147-370 131-333 (439)
137 PRK11034 clpA ATP-dependent Cl 99.2 1.3E-09 2.7E-14 127.7 19.6 204 150-377 459-709 (758)
138 TIGR03015 pepcterm_ATPase puta 99.1 4.1E-09 8.9E-14 109.4 20.9 178 179-379 44-238 (269)
139 CHL00206 ycf2 Ycf2; Provisiona 99.1 2.9E-10 6.3E-15 138.4 13.3 189 176-386 1628-1860(2281)
140 KOG0735 AAA+-type ATPase [Post 99.1 1.2E-09 2.7E-14 121.4 17.0 204 147-385 665-887 (952)
141 PRK10787 DNA-binding ATP-depen 99.1 1.1E-09 2.5E-14 128.9 17.8 210 136-378 300-550 (784)
142 KOG1514 Origin recognition com 99.1 1.8E-09 4E-14 120.5 18.0 213 144-384 394-626 (767)
143 TIGR02639 ClpA ATP-dependent C 99.1 2.4E-09 5.2E-14 126.4 20.0 206 150-378 455-706 (731)
144 PF13177 DNA_pol3_delta2: DNA 99.1 1.1E-09 2.4E-14 105.3 13.4 153 153-337 1-162 (162)
145 PRK05342 clpX ATP-dependent pr 99.1 5.6E-09 1.2E-13 114.5 18.5 63 151-213 73-143 (412)
146 COG0465 HflB ATP-dependent Zn 99.1 1.8E-09 4E-14 121.1 14.6 201 145-384 146-371 (596)
147 KOG0652 26S proteasome regulat 99.0 2.8E-09 6E-14 106.2 13.8 190 145-368 167-373 (424)
148 COG0542 clpA ATP-binding subun 99.0 2.5E-09 5.4E-14 123.0 15.4 211 135-384 156-391 (786)
149 KOG0729 26S proteasome regulat 99.0 7.5E-10 1.6E-14 110.4 9.4 215 136-385 164-400 (435)
150 KOG0730 AAA+-type ATPase [Post 99.0 4.7E-09 1E-13 116.7 16.6 195 144-372 180-386 (693)
151 KOG0726 26S proteasome regulat 99.0 5.1E-10 1.1E-14 113.0 8.2 212 136-384 172-407 (440)
152 TIGR01650 PD_CobS cobaltochela 99.0 3.7E-09 8E-14 111.4 15.0 207 143-375 39-258 (327)
153 PRK06090 DNA polymerase III su 99.0 1.5E-08 3.2E-13 107.4 19.6 186 154-379 8-202 (319)
154 KOG2004 Mitochondrial ATP-depe 99.0 2.8E-09 6.1E-14 118.8 14.5 202 153-384 415-643 (906)
155 TIGR02640 gas_vesic_GvpN gas v 99.0 1.1E-08 2.4E-13 106.1 17.8 168 179-368 22-212 (262)
156 PF01637 Arch_ATPase: Archaeal 99.0 6E-09 1.3E-13 104.9 15.4 198 151-374 1-230 (234)
157 KOG0742 AAA+-type ATPase [Post 99.0 5.4E-09 1.2E-13 109.9 14.9 172 145-351 350-530 (630)
158 KOG0740 AAA+-type ATPase [Post 99.0 1.2E-08 2.5E-13 110.4 16.3 244 141-435 145-407 (428)
159 CHL00095 clpC Clp protease ATP 99.0 2.6E-08 5.7E-13 119.0 20.8 205 149-377 509-775 (821)
160 KOG0744 AAA+-type ATPase [Post 99.0 8.5E-09 1.8E-13 105.8 13.9 172 149-349 142-340 (423)
161 COG0466 Lon ATP-dependent Lon 99.0 8.3E-09 1.8E-13 115.9 14.6 203 153-384 327-555 (782)
162 COG2607 Predicted ATPase (AAA+ 98.9 9.9E-08 2.1E-12 94.6 20.2 208 140-384 51-279 (287)
163 COG0542 clpA ATP-binding subun 98.9 1.7E-08 3.7E-13 116.3 17.0 196 150-368 492-733 (786)
164 PRK06964 DNA polymerase III su 98.9 3.4E-08 7.5E-13 105.6 17.6 172 174-379 18-226 (342)
165 PRK10865 protein disaggregatio 98.9 4.1E-08 8.8E-13 117.4 19.4 207 148-378 567-823 (857)
166 KOG0651 26S proteasome regulat 98.9 7.8E-09 1.7E-13 105.6 11.1 105 147-274 130-239 (388)
167 KOG1942 DNA helicase, TBP-inte 98.9 5.6E-08 1.2E-12 98.5 16.9 111 261-380 297-412 (456)
168 TIGR03346 chaperone_ClpB ATP-d 98.9 7.3E-08 1.6E-12 115.6 20.6 212 149-383 565-822 (852)
169 PRK11331 5-methylcytosine-spec 98.8 4E-08 8.6E-13 107.4 14.4 114 148-283 174-295 (459)
170 TIGR00382 clpX endopeptidase C 98.8 1.5E-07 3.3E-12 102.9 18.8 63 151-213 79-151 (413)
171 TIGR00390 hslU ATP-dependent p 98.8 5.6E-08 1.2E-12 105.1 14.6 63 151-213 14-82 (441)
172 PRK05201 hslU ATP-dependent pr 98.8 5.3E-08 1.1E-12 105.4 14.0 63 151-213 17-85 (443)
173 PRK05917 DNA polymerase III su 98.8 2.7E-07 5.9E-12 96.1 18.8 164 159-373 7-176 (290)
174 PRK08699 DNA polymerase III su 98.8 7.5E-08 1.6E-12 102.7 13.7 147 174-347 18-183 (325)
175 KOG0732 AAA+-type ATPase conta 98.8 1.2E-07 2.6E-12 111.5 16.1 200 146-375 262-477 (1080)
176 PRK07132 DNA polymerase III su 98.7 1.7E-06 3.6E-11 91.2 21.3 177 158-379 5-185 (299)
177 KOG0735 AAA+-type ATPase [Post 98.7 3.8E-07 8.3E-12 102.0 16.6 160 177-371 430-608 (952)
178 PRK07952 DNA replication prote 98.7 3.3E-07 7E-12 93.8 14.8 67 140-212 63-136 (244)
179 TIGR01817 nifA Nif-specific re 98.7 6.4E-07 1.4E-11 102.5 18.9 215 141-385 188-427 (534)
180 KOG2680 DNA helicase TIP49, TB 98.7 8.2E-08 1.8E-12 97.6 10.0 115 261-384 289-407 (454)
181 cd00009 AAA The AAA+ (ATPases 98.7 3.2E-07 6.8E-12 84.5 13.1 53 153-213 2-57 (151)
182 PRK07276 DNA polymerase III su 98.6 1.5E-06 3.3E-11 90.9 18.2 185 153-379 6-198 (290)
183 PRK12377 putative replication 98.6 6.1E-07 1.3E-11 92.0 14.5 64 143-212 68-138 (248)
184 PRK05818 DNA polymerase III su 98.6 1.6E-06 3.5E-11 88.6 16.8 170 179-382 8-194 (261)
185 KOG0736 Peroxisome assembly fa 98.6 8.1E-07 1.7E-11 100.4 15.2 185 153-373 405-599 (953)
186 smart00382 AAA ATPases associa 98.6 6.6E-07 1.4E-11 81.5 12.1 86 179-276 3-94 (148)
187 PRK08116 hypothetical protein; 98.5 9.1E-07 2E-11 92.1 12.6 68 143-213 79-152 (268)
188 PRK08939 primosomal protein Dn 98.5 7.8E-07 1.7E-11 94.2 11.6 67 142-212 120-193 (306)
189 PF05621 TniB: Bacterial TniB 98.5 1.6E-05 3.4E-10 82.8 20.7 184 179-384 62-267 (302)
190 PRK13407 bchI magnesium chelat 98.5 5E-06 1.1E-10 88.9 17.1 51 144-202 3-53 (334)
191 TIGR02974 phageshock_pspF psp 98.5 5.7E-06 1.2E-10 88.7 17.4 205 151-386 1-233 (329)
192 PF13401 AAA_22: AAA domain; P 98.4 3.8E-07 8.2E-12 83.7 6.8 107 179-301 5-124 (131)
193 COG0714 MoxR-like ATPases [Gen 98.4 3.3E-06 7.3E-11 90.6 15.1 53 151-213 26-78 (329)
194 PRK06835 DNA replication prote 98.4 4.1E-06 8.8E-11 89.5 15.1 52 156-213 167-221 (329)
195 PHA02244 ATPase-like protein 98.4 1.1E-05 2.3E-10 86.5 18.1 32 180-211 121-152 (383)
196 PF13173 AAA_14: AAA domain 98.4 2.1E-06 4.5E-11 79.1 11.1 123 179-341 3-127 (128)
197 PRK13531 regulatory ATPase Rav 98.4 5.9E-06 1.3E-10 91.4 16.0 43 151-203 22-64 (498)
198 PRK11388 DNA-binding transcrip 98.4 9.9E-06 2.1E-10 94.8 18.6 209 145-385 321-553 (638)
199 PF00931 NB-ARC: NB-ARC domain 98.4 3.7E-06 7.9E-11 88.0 13.0 182 154-373 1-197 (287)
200 PF07728 AAA_5: AAA domain (dy 98.4 5.4E-07 1.2E-11 84.0 5.6 41 180-220 1-41 (139)
201 TIGR02329 propionate_PrpR prop 98.3 2E-05 4.3E-10 89.4 18.3 210 145-384 208-448 (526)
202 PF07724 AAA_2: AAA domain (Cd 98.3 2.2E-06 4.9E-11 83.1 9.2 35 179-213 4-42 (171)
203 PRK10820 DNA-binding transcrip 98.3 2.4E-05 5.2E-10 89.1 18.3 211 144-385 199-436 (520)
204 PRK08181 transposase; Validate 98.3 1.9E-06 4.1E-11 89.5 8.5 34 179-212 107-143 (269)
205 PRK15424 propionate catabolism 98.3 3.9E-05 8.4E-10 87.1 18.8 209 146-384 216-463 (538)
206 COG1219 ClpX ATP-dependent pro 98.3 1.4E-05 3E-10 82.5 13.4 95 177-291 96-202 (408)
207 PRK14700 recombination factor 98.2 3.7E-06 8E-11 87.1 8.9 80 296-384 8-93 (300)
208 PF07726 AAA_3: ATPase family 98.2 3.8E-06 8.3E-11 76.5 7.2 33 180-212 1-33 (131)
209 PRK15429 formate hydrogenlyase 98.2 5.6E-05 1.2E-09 89.2 18.9 208 146-385 373-608 (686)
210 PRK11608 pspF phage shock prot 98.2 4.1E-05 8.8E-10 82.1 15.9 208 148-385 5-239 (326)
211 smart00763 AAA_PrkA PrkA AAA d 98.2 2.9E-06 6.3E-11 90.7 6.8 61 142-204 43-104 (361)
212 COG1618 Predicted nucleotide k 98.1 4.3E-05 9.3E-10 71.9 13.1 33 180-212 7-42 (179)
213 PF05729 NACHT: NACHT domain 98.1 3.9E-05 8.5E-10 72.8 13.5 78 260-350 81-164 (166)
214 PRK06921 hypothetical protein; 98.1 1.5E-05 3.2E-10 82.9 11.2 33 179-211 118-154 (266)
215 PRK05022 anaerobic nitric oxid 98.1 0.00012 2.6E-09 83.3 19.4 209 147-386 185-420 (509)
216 PRK06526 transposase; Provisio 98.1 3.2E-06 7E-11 87.2 5.9 32 179-210 99-133 (254)
217 KOG0741 AAA+-type ATPase [Post 98.1 0.00013 2.7E-09 80.0 17.8 174 175-384 535-721 (744)
218 COG3267 ExeA Type II secretory 98.1 0.00036 7.8E-09 70.6 19.7 204 152-384 34-250 (269)
219 PF01695 IstB_IS21: IstB-like 98.1 2.9E-06 6.2E-11 82.9 4.5 35 179-213 48-85 (178)
220 PF03266 NTPase_1: NTPase; In 98.1 3.7E-06 7.9E-11 81.3 4.7 70 261-343 96-165 (168)
221 PF12775 AAA_7: P-loop contain 98.0 2.6E-05 5.6E-10 81.3 10.8 170 148-351 9-195 (272)
222 CHL00081 chlI Mg-protoporyphyr 98.0 9.6E-05 2.1E-09 79.4 15.2 51 144-202 11-62 (350)
223 PRK13695 putative NTPase; Prov 98.0 0.00016 3.4E-09 70.2 15.4 76 260-348 96-171 (174)
224 TIGR02030 BchI-ChlI magnesium 98.0 0.00021 4.5E-09 76.7 17.5 47 148-202 3-49 (337)
225 PRK04132 replication factor C 98.0 3.4E-06 7.4E-11 99.4 3.4 51 136-194 6-56 (846)
226 PHA02774 E1; Provisional 98.0 7E-05 1.5E-09 84.1 13.2 37 174-210 430-467 (613)
227 TIGR02442 Cob-chelat-sub cobal 98.0 0.00037 7.9E-09 81.3 19.3 47 148-202 3-49 (633)
228 COG1484 DnaC DNA replication p 97.9 9.1E-05 2E-09 76.5 12.7 54 153-213 87-143 (254)
229 KOG1051 Chaperone HSP104 and r 97.9 0.00017 3.8E-09 84.9 16.2 122 150-292 563-687 (898)
230 PRK09183 transposase/IS protei 97.9 3.7E-05 8.1E-10 79.7 9.6 34 179-212 103-139 (259)
231 COG2204 AtoC Response regulato 97.9 0.00044 9.6E-09 76.4 18.3 203 146-386 138-374 (464)
232 COG1221 PspF Transcriptional r 97.9 0.00025 5.5E-09 77.0 15.8 205 146-386 75-309 (403)
233 PLN03210 Resistant to P. syrin 97.9 0.00037 8E-09 87.0 19.2 53 145-203 180-232 (1153)
234 PF00910 RNA_helicase: RNA hel 97.9 4.1E-05 8.9E-10 68.3 7.9 23 181-203 1-23 (107)
235 PRK04841 transcriptional regul 97.9 0.00039 8.5E-09 84.6 18.7 191 144-374 9-221 (903)
236 PHA00729 NTP-binding motif con 97.8 9.6E-05 2.1E-09 74.4 10.2 30 179-208 18-47 (226)
237 KOG0741 AAA+-type ATPase [Post 97.8 7.2E-05 1.6E-09 81.8 9.9 182 178-385 256-457 (744)
238 PF10443 RNA12: RNA12 protein; 97.8 0.00058 1.3E-08 74.2 16.5 206 155-384 2-280 (431)
239 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.4E-10 71.3 4.3 31 180-210 1-31 (121)
240 TIGR02915 PEP_resp_reg putativ 97.8 0.00041 8.9E-09 77.6 15.6 207 147-385 137-371 (445)
241 cd01120 RecA-like_NTPases RecA 97.8 0.00016 3.4E-09 68.2 10.5 33 180-212 1-36 (165)
242 PRK12723 flagellar biosynthesi 97.8 0.00091 2E-08 73.0 17.3 171 156-353 149-339 (388)
243 PRK05574 holA DNA polymerase I 97.8 0.0025 5.4E-08 68.5 20.2 116 261-384 77-194 (340)
244 PRK10923 glnG nitrogen regulat 97.7 0.0013 2.7E-08 74.2 18.7 209 147-385 136-370 (469)
245 PRK15115 response regulator Gl 97.7 0.0016 3.4E-08 72.9 19.1 202 150-385 135-366 (444)
246 COG5271 MDN1 AAA ATPase contai 97.7 0.00023 5E-09 85.9 12.3 159 179-365 1544-1715(4600)
247 PRK00771 signal recognition pa 97.7 0.0024 5.2E-08 70.9 19.5 59 155-213 68-133 (437)
248 PF06309 Torsin: Torsin; Inte 97.7 8.2E-05 1.8E-09 67.7 6.3 53 149-202 25-77 (127)
249 KOG2170 ATPase of the AAA+ sup 97.7 0.002 4.3E-08 66.6 16.4 192 151-367 84-318 (344)
250 PRK06585 holA DNA polymerase I 97.6 0.0048 1E-07 66.6 20.6 200 179-436 21-227 (343)
251 PRK11361 acetoacetate metaboli 97.6 0.0022 4.9E-08 71.8 18.5 209 148-385 142-375 (457)
252 PF14532 Sigma54_activ_2: Sigm 97.6 0.00041 8.8E-09 64.7 10.5 47 152-204 1-47 (138)
253 PF12774 AAA_6: Hydrolytic ATP 97.6 0.0015 3.2E-08 66.5 15.2 65 180-274 34-98 (231)
254 PRK05703 flhF flagellar biosyn 97.6 0.0023 5E-08 71.0 17.9 35 179-213 222-261 (424)
255 PF12780 AAA_8: P-loop contain 97.6 0.0017 3.7E-08 67.6 15.8 57 150-212 9-65 (268)
256 PRK11889 flhF flagellar biosyn 97.6 0.003 6.6E-08 68.5 17.9 34 179-212 242-278 (436)
257 PF00158 Sigma54_activat: Sigm 97.6 0.0006 1.3E-08 66.0 11.5 57 151-213 1-60 (168)
258 COG5271 MDN1 AAA ATPase contai 97.6 0.0015 3.2E-08 79.4 16.6 190 151-377 867-1071(4600)
259 PRK07452 DNA polymerase III su 97.6 0.0037 8.1E-08 66.9 18.8 169 179-385 2-179 (326)
260 KOG2543 Origin recognition com 97.6 0.0011 2.4E-08 70.5 13.7 176 148-347 5-191 (438)
261 KOG2228 Origin recognition com 97.6 0.0018 3.9E-08 67.8 15.0 181 151-349 26-219 (408)
262 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00037 7.9E-09 70.1 9.8 22 179-200 30-51 (213)
263 TIGR01818 ntrC nitrogen regula 97.6 0.0049 1.1E-07 69.2 19.9 199 149-385 134-366 (463)
264 PRK15455 PrkA family serine pr 97.6 9.3E-05 2E-09 83.1 5.8 56 145-202 72-127 (644)
265 PF14516 AAA_35: AAA-like doma 97.5 0.0053 1.2E-07 66.0 19.1 173 179-373 32-234 (331)
266 PTZ00202 tuzin; Provisional 97.5 0.00082 1.8E-08 73.2 12.5 63 144-211 257-319 (550)
267 PRK10536 hypothetical protein; 97.5 0.0015 3.2E-08 67.0 13.8 50 154-213 60-113 (262)
268 TIGR01128 holA DNA polymerase 97.5 0.0024 5.3E-08 67.3 16.1 148 261-435 47-194 (302)
269 PRK14974 cell division protein 97.5 0.0044 9.6E-08 66.5 18.0 33 179-211 141-176 (336)
270 PF13604 AAA_30: AAA domain; P 97.5 0.0004 8.6E-09 68.9 9.0 32 179-210 19-53 (196)
271 PF13191 AAA_16: AAA ATPase do 97.5 8.1E-05 1.7E-09 72.2 4.0 59 150-213 1-62 (185)
272 PF00448 SRP54: SRP54-type pro 97.5 0.0016 3.5E-08 64.6 13.1 33 179-211 2-37 (196)
273 PLN02840 tRNA dimethylallyltra 97.5 0.00098 2.1E-08 73.0 12.3 161 179-386 22-194 (421)
274 PRK06581 DNA polymerase III su 97.5 0.0075 1.6E-07 61.0 17.3 172 174-378 12-187 (263)
275 PF01078 Mg_chelatase: Magnesi 97.5 0.00015 3.2E-09 71.9 5.2 46 147-202 1-46 (206)
276 COG0324 MiaA tRNA delta(2)-iso 97.5 0.0011 2.4E-08 69.6 11.8 159 179-387 4-173 (308)
277 TIGR00174 miaA tRNA isopenteny 97.4 0.0011 2.4E-08 69.4 11.7 157 180-386 1-168 (287)
278 TIGR02031 BchD-ChlD magnesium 97.4 0.0039 8.5E-08 72.1 16.8 32 179-210 17-50 (589)
279 TIGR00368 Mg chelatase-related 97.4 0.00095 2.1E-08 75.4 11.4 47 146-202 189-235 (499)
280 PRK00091 miaA tRNA delta(2)-is 97.4 0.001 2.2E-08 70.5 10.8 157 179-385 5-172 (307)
281 PF09848 DUF2075: Uncharacteri 97.4 0.00032 7E-09 76.0 7.2 24 179-202 2-25 (352)
282 COG4088 Predicted nucleotide k 97.4 0.0021 4.6E-08 63.0 11.9 24 179-202 2-25 (261)
283 PRK04296 thymidine kinase; Pro 97.4 0.0014 3.1E-08 64.6 11.1 32 179-210 3-37 (190)
284 PRK12727 flagellar biosynthesi 97.4 0.0052 1.1E-07 69.1 16.4 25 178-202 350-374 (559)
285 PRK00131 aroK shikimate kinase 97.4 0.00019 4.1E-09 69.1 4.6 30 179-208 5-34 (175)
286 PRK08485 DNA polymerase III su 97.4 0.0033 7.1E-08 61.8 13.1 116 233-377 38-166 (206)
287 PRK08118 topology modulation p 97.3 0.00017 3.7E-09 69.7 4.0 31 180-210 3-33 (167)
288 COG3829 RocR Transcriptional r 97.3 0.0091 2E-07 66.5 17.5 204 142-384 238-477 (560)
289 PF13671 AAA_33: AAA domain; P 97.3 0.00018 3.9E-09 66.9 3.7 29 180-208 1-29 (143)
290 COG1239 ChlI Mg-chelatase subu 97.3 0.013 2.8E-07 63.6 18.0 25 179-203 39-63 (423)
291 PF10923 DUF2791: P-loop Domai 97.3 0.053 1.2E-06 59.6 23.2 127 260-386 239-401 (416)
292 COG1102 Cmk Cytidylate kinase 97.3 0.00019 4.2E-09 67.6 3.6 29 180-208 2-30 (179)
293 COG1936 Predicted nucleotide k 97.3 0.00017 3.8E-09 68.7 3.3 30 180-210 2-31 (180)
294 COG1373 Predicted ATPase (AAA+ 97.3 0.0044 9.6E-08 68.3 14.8 124 180-344 39-162 (398)
295 PF00519 PPV_E1_C: Papillomavi 97.3 0.001 2.2E-08 71.2 9.3 40 174-213 258-297 (432)
296 PRK10365 transcriptional regul 97.3 0.011 2.4E-07 65.9 18.1 201 150-385 140-371 (441)
297 PRK14722 flhF flagellar biosyn 97.3 0.0029 6.2E-08 68.7 12.8 25 178-202 137-161 (374)
298 PRK14729 miaA tRNA delta(2)-is 97.3 0.0024 5.3E-08 67.3 11.9 156 179-386 5-172 (300)
299 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00099 2.2E-08 69.3 8.9 60 145-213 56-118 (264)
300 cd01121 Sms Sms (bacterial rad 97.3 0.002 4.3E-08 70.2 11.6 39 174-212 78-119 (372)
301 cd01124 KaiC KaiC is a circadi 97.3 0.0022 4.7E-08 62.5 10.8 32 180-211 1-35 (187)
302 KOG3347 Predicted nucleotide k 97.3 0.00023 4.9E-09 66.1 3.5 32 179-210 8-39 (176)
303 PHA02624 large T antigen; Prov 97.2 0.00056 1.2E-08 77.3 7.2 40 174-213 427-466 (647)
304 PRK13765 ATP-dependent proteas 97.2 0.00036 7.7E-09 80.7 5.6 52 143-204 25-76 (637)
305 cd03283 ABC_MutS-like MutS-lik 97.2 0.0044 9.5E-08 61.7 12.7 22 179-200 26-47 (199)
306 PRK12726 flagellar biosynthesi 97.2 0.016 3.4E-07 62.8 17.5 36 178-213 206-244 (407)
307 PRK03839 putative kinase; Prov 97.2 0.00032 7E-09 68.4 4.2 31 180-210 2-32 (180)
308 PRK11823 DNA repair protein Ra 97.2 0.0018 4E-08 72.3 10.6 40 174-213 76-118 (446)
309 smart00350 MCM minichromosome 97.2 0.011 2.4E-07 67.3 17.0 24 180-203 238-261 (509)
310 KOG0745 Putative ATP-dependent 97.2 0.00081 1.8E-08 72.3 7.1 98 178-292 226-332 (564)
311 PF08519 RFC1: Replication fac 97.2 0.00038 8.3E-09 66.2 4.2 93 506-616 1-93 (155)
312 COG4619 ABC-type uncharacteriz 97.2 0.0031 6.7E-08 60.1 10.0 24 179-202 30-53 (223)
313 TIGR03499 FlhF flagellar biosy 97.2 0.0034 7.3E-08 66.0 11.6 57 157-213 169-234 (282)
314 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.0033 7.1E-08 68.2 11.4 27 177-203 61-87 (362)
315 PF00437 T2SE: Type II/IV secr 97.1 0.00081 1.8E-08 70.0 6.5 64 144-213 99-165 (270)
316 PRK14737 gmk guanylate kinase; 97.1 0.013 2.7E-07 57.8 14.5 25 178-202 4-28 (186)
317 PRK13947 shikimate kinase; Pro 97.1 0.00044 9.6E-09 66.6 4.2 31 180-210 3-33 (171)
318 PRK12724 flagellar biosynthesi 97.1 0.017 3.8E-07 63.3 16.7 56 156-211 195-260 (432)
319 COG2804 PulE Type II secretory 97.1 0.0016 3.5E-08 72.0 8.8 62 142-212 231-295 (500)
320 cd01131 PilT Pilus retraction 97.1 0.0011 2.4E-08 65.8 7.0 25 179-203 2-26 (198)
321 PRK06762 hypothetical protein; 97.1 0.00056 1.2E-08 65.6 4.7 32 179-210 3-34 (166)
322 cd03115 SRP The signal recogni 97.1 0.01 2.3E-07 57.3 13.6 34 180-213 2-38 (173)
323 cd01128 rho_factor Transcripti 97.1 0.0015 3.3E-08 67.2 8.0 26 179-204 17-42 (249)
324 COG2909 MalT ATP-dependent tra 97.1 0.012 2.5E-07 68.6 15.6 203 143-385 13-236 (894)
325 PRK00625 shikimate kinase; Pro 97.1 0.00054 1.2E-08 66.6 4.3 31 180-210 2-32 (173)
326 TIGR02688 conserved hypothetic 97.1 0.0057 1.2E-07 66.8 12.4 23 179-201 210-232 (449)
327 COG1116 TauB ABC-type nitrate/ 97.1 0.0043 9.3E-08 62.9 10.6 24 179-202 30-53 (248)
328 PF07693 KAP_NTPase: KAP famil 97.0 0.03 6.5E-07 59.6 17.9 86 258-351 170-265 (325)
329 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00052 1.1E-08 66.9 3.9 30 180-209 1-30 (183)
330 TIGR02237 recomb_radB DNA repa 97.0 0.0045 9.7E-08 61.7 10.7 39 174-212 8-49 (209)
331 TIGR01618 phage_P_loop phage n 97.0 0.00082 1.8E-08 67.7 5.3 21 179-199 13-33 (220)
332 cd00464 SK Shikimate kinase (S 97.0 0.00054 1.2E-08 64.6 3.8 29 181-209 2-30 (154)
333 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0057 1.2E-07 61.1 11.3 22 179-200 30-51 (204)
334 cd02021 GntK Gluconate kinase 97.0 0.00055 1.2E-08 64.5 3.8 29 180-208 1-29 (150)
335 PRK09361 radB DNA repair and r 97.0 0.0055 1.2E-07 61.9 11.3 39 174-212 19-60 (225)
336 TIGR02533 type_II_gspE general 97.0 0.0021 4.6E-08 72.5 9.1 62 143-213 216-280 (486)
337 PRK05629 hypothetical protein; 97.0 0.052 1.1E-06 58.0 19.3 93 327-436 117-209 (318)
338 TIGR00764 lon_rel lon-related 97.0 0.00094 2E-08 77.4 6.2 48 147-204 16-63 (608)
339 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00067 1.4E-08 66.2 4.3 30 179-208 4-33 (188)
340 PRK14531 adenylate kinase; Pro 97.0 0.00067 1.5E-08 66.5 4.3 30 179-208 3-32 (183)
341 PRK08154 anaerobic benzoate ca 97.0 0.0014 3E-08 69.8 7.0 55 154-208 109-163 (309)
342 PRK14532 adenylate kinase; Pro 97.0 0.00067 1.4E-08 66.6 4.1 30 180-209 2-31 (188)
343 PRK07261 topology modulation p 97.0 0.00076 1.7E-08 65.4 4.4 31 180-210 2-32 (171)
344 PRK13949 shikimate kinase; Pro 97.0 0.0007 1.5E-08 65.5 4.0 31 180-210 3-33 (169)
345 cd02020 CMPK Cytidine monophos 97.0 0.00067 1.5E-08 63.2 3.8 31 180-210 1-31 (147)
346 cd00227 CPT Chloramphenicol (C 97.0 0.00065 1.4E-08 66.0 3.8 29 179-207 3-31 (175)
347 PRK08533 flagellar accessory p 96.9 0.01 2.2E-07 60.5 12.5 35 177-211 23-60 (230)
348 TIGR02782 TrbB_P P-type conjug 96.9 0.0015 3.4E-08 69.1 6.7 62 144-211 104-170 (299)
349 cd01394 radB RadB. The archaea 96.9 0.009 2E-07 60.0 12.0 38 174-211 15-55 (218)
350 PRK10416 signal recognition pa 96.9 0.046 1E-06 58.4 17.9 34 178-211 114-150 (318)
351 PRK10436 hypothetical protein; 96.9 0.0034 7.3E-08 70.3 9.6 60 145-213 194-256 (462)
352 PF02562 PhoH: PhoH-like prote 96.9 0.0071 1.5E-07 60.3 10.9 24 179-202 20-43 (205)
353 cd03243 ABC_MutS_homologs The 96.9 0.0046 1E-07 61.5 9.7 22 179-200 30-51 (202)
354 PRK06696 uridine kinase; Valid 96.9 0.002 4.3E-08 65.2 7.1 52 154-210 3-57 (223)
355 TIGR00150 HI0065_YjeE ATPase, 96.9 0.002 4.4E-08 59.7 6.4 52 155-213 5-56 (133)
356 smart00534 MUTSac ATPase domai 96.9 0.012 2.7E-07 57.7 12.5 19 181-199 2-20 (185)
357 PRK14530 adenylate kinase; Pro 96.9 0.00088 1.9E-08 67.4 4.3 31 179-209 4-34 (215)
358 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0052 1.1E-07 61.1 9.7 22 179-200 29-50 (200)
359 PF10236 DAP3: Mitochondrial r 96.9 0.068 1.5E-06 56.9 18.7 49 328-376 256-307 (309)
360 TIGR01420 pilT_fam pilus retra 96.9 0.0036 7.9E-08 67.6 9.2 34 179-212 123-160 (343)
361 COG1220 HslU ATP-dependent pro 96.9 0.0015 3.2E-08 68.4 5.8 63 151-213 17-85 (444)
362 PRK06217 hypothetical protein; 96.9 0.001 2.2E-08 65.1 4.4 31 180-210 3-33 (183)
363 TIGR01313 therm_gnt_kin carboh 96.9 0.00085 1.8E-08 64.2 3.7 27 181-207 1-27 (163)
364 cd01428 ADK Adenylate kinase ( 96.9 0.00096 2.1E-08 65.5 4.0 29 181-209 2-30 (194)
365 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.014 3E-07 59.1 12.4 22 179-200 32-53 (222)
366 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.009 2E-07 56.7 10.5 25 179-203 26-50 (157)
367 TIGR00064 ftsY signal recognit 96.8 0.07 1.5E-06 55.7 18.0 34 178-211 72-108 (272)
368 PF13245 AAA_19: Part of AAA d 96.8 0.0011 2.3E-08 55.3 3.5 24 179-202 11-35 (76)
369 PRK04040 adenylate kinase; Pro 96.8 0.0011 2.4E-08 65.3 4.2 29 179-207 3-33 (188)
370 cd00046 DEXDc DEAD-like helica 96.8 0.0039 8.5E-08 56.3 7.5 24 180-203 2-25 (144)
371 cd01393 recA_like RecA is a b 96.8 0.014 3E-07 58.8 12.3 39 174-212 15-62 (226)
372 PRK06547 hypothetical protein; 96.8 0.0013 2.7E-08 64.0 4.3 31 179-209 16-46 (172)
373 COG1419 FlhF Flagellar GTP-bin 96.8 0.055 1.2E-06 58.8 17.1 26 178-203 203-228 (407)
374 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0022 4.8E-08 68.3 6.4 53 149-203 61-113 (358)
375 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0082 1.8E-07 61.8 10.6 31 180-210 1-34 (249)
376 PF01443 Viral_helicase1: Vira 96.8 0.0017 3.6E-08 65.8 5.4 22 181-202 1-22 (234)
377 TIGR02012 tigrfam_recA protein 96.8 0.012 2.6E-07 62.6 12.0 39 174-212 51-92 (321)
378 PRK14528 adenylate kinase; Pro 96.8 0.0013 2.9E-08 64.6 4.2 31 179-209 2-32 (186)
379 PRK01184 hypothetical protein; 96.8 0.0013 2.9E-08 64.2 4.2 30 179-209 2-31 (184)
380 PRK02496 adk adenylate kinase; 96.8 0.0013 2.7E-08 64.4 3.9 30 180-209 3-32 (184)
381 PRK14527 adenylate kinase; Pro 96.8 0.0011 2.4E-08 65.3 3.6 30 179-208 7-36 (191)
382 PRK13946 shikimate kinase; Pro 96.7 0.0014 3.1E-08 64.2 4.3 31 179-209 11-41 (184)
383 PF08433 KTI12: Chromatin asso 96.7 0.013 2.8E-07 61.2 11.4 32 179-210 2-36 (270)
384 PF13086 AAA_11: AAA domain; P 96.7 0.0013 2.8E-08 65.9 4.0 23 180-202 19-41 (236)
385 TIGR02538 type_IV_pilB type IV 96.7 0.005 1.1E-07 71.0 9.1 61 144-213 291-354 (564)
386 cd00984 DnaB_C DnaB helicase C 96.7 0.018 3.9E-07 58.7 12.3 40 174-213 9-52 (242)
387 PTZ00088 adenylate kinase 1; P 96.7 0.0014 3.1E-08 66.6 4.0 31 180-210 8-38 (229)
388 COG1126 GlnQ ABC-type polar am 96.7 0.01 2.2E-07 58.9 9.7 41 260-302 154-194 (240)
389 PRK03731 aroL shikimate kinase 96.7 0.0017 3.7E-08 62.6 4.4 31 179-209 3-33 (171)
390 PLN02200 adenylate kinase fami 96.7 0.0017 3.6E-08 66.3 4.5 29 179-207 44-72 (234)
391 PRK05800 cobU adenosylcobinami 96.7 0.0078 1.7E-07 58.3 8.9 33 180-212 3-35 (170)
392 TIGR01448 recD_rel helicase, p 96.7 0.021 4.5E-07 67.8 14.1 35 179-213 339-377 (720)
393 PRK13948 shikimate kinase; Pro 96.7 0.002 4.3E-08 63.2 4.7 33 178-210 10-42 (182)
394 cd03222 ABC_RNaseL_inhibitor T 96.7 0.022 4.8E-07 55.5 12.0 24 179-202 26-49 (177)
395 TIGR00959 ffh signal recogniti 96.7 0.17 3.8E-06 56.1 20.3 36 178-213 99-138 (428)
396 cd00544 CobU Adenosylcobinamid 96.7 0.017 3.8E-07 55.9 11.1 33 180-212 1-33 (169)
397 PRK09862 putative ATP-dependen 96.7 0.015 3.2E-07 65.7 12.1 47 146-202 188-234 (506)
398 COG1117 PstB ABC-type phosphat 96.7 0.015 3.2E-07 57.7 10.5 24 179-202 34-57 (253)
399 cd02019 NK Nucleoside/nucleoti 96.7 0.002 4.3E-08 52.6 3.8 22 181-202 2-23 (69)
400 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.036 7.9E-07 51.8 13.1 21 181-201 4-24 (162)
401 COG0703 AroK Shikimate kinase 96.6 0.0016 3.4E-08 62.8 3.6 31 179-209 3-33 (172)
402 TIGR01447 recD exodeoxyribonuc 96.6 0.011 2.3E-07 68.3 11.0 24 179-202 161-184 (586)
403 PF13238 AAA_18: AAA domain; P 96.6 0.0013 2.8E-08 59.6 3.0 22 181-202 1-22 (129)
404 cd03238 ABC_UvrA The excision 96.6 0.027 5.8E-07 54.9 12.2 23 179-201 22-44 (176)
405 PRK04182 cytidylate kinase; Pr 96.6 0.0019 4E-08 62.5 4.2 29 180-208 2-30 (180)
406 COG0606 Predicted ATPase with 96.6 0.0017 3.6E-08 71.3 4.1 48 145-202 175-222 (490)
407 COG3604 FhlA Transcriptional r 96.6 0.075 1.6E-06 58.8 16.6 208 147-386 221-456 (550)
408 PRK05057 aroK shikimate kinase 96.6 0.0023 4.9E-08 62.2 4.6 32 179-210 5-36 (172)
409 TIGR01351 adk adenylate kinase 96.6 0.0019 4.1E-08 64.7 4.1 29 181-209 2-30 (210)
410 smart00173 RAS Ras subfamily o 96.6 0.036 7.7E-07 52.4 12.7 21 181-201 3-23 (164)
411 KOG1970 Checkpoint RAD17-RFC c 96.6 0.00047 1E-08 76.2 -0.4 46 4-61 47-92 (634)
412 PRK00279 adk adenylate kinase; 96.6 0.002 4.4E-08 64.8 4.2 30 180-209 2-31 (215)
413 PRK13900 type IV secretion sys 96.6 0.067 1.5E-06 57.5 16.0 44 160-209 148-193 (332)
414 TIGR00416 sms DNA repair prote 96.6 0.01 2.2E-07 66.5 10.1 38 174-211 90-130 (454)
415 TIGR00767 rho transcription te 96.6 0.0065 1.4E-07 66.1 8.1 25 179-203 169-193 (415)
416 cd04139 RalA_RalB RalA/RalB su 96.6 0.07 1.5E-06 50.1 14.5 21 181-201 3-23 (164)
417 cd03216 ABC_Carb_Monos_I This 96.6 0.021 4.5E-07 54.8 10.8 24 179-202 27-50 (163)
418 cd00983 recA RecA is a bacter 96.6 0.017 3.8E-07 61.5 11.1 38 174-211 51-91 (325)
419 PLN02748 tRNA dimethylallyltra 96.5 0.035 7.6E-07 62.0 13.9 32 179-210 23-54 (468)
420 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0024 5.3E-08 61.2 4.1 29 180-208 2-30 (171)
421 PRK14723 flhF flagellar biosyn 96.5 0.1 2.2E-06 61.6 17.9 25 178-202 185-209 (767)
422 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.02 4.3E-07 53.8 10.2 24 179-202 27-50 (144)
423 PHA02530 pseT polynucleotide k 96.5 0.0024 5.2E-08 67.4 4.3 29 179-207 3-32 (300)
424 PRK10078 ribose 1,5-bisphospho 96.5 0.0023 4.9E-08 62.9 3.8 29 179-207 3-31 (186)
425 TIGR02525 plasmid_TraJ plasmid 96.5 0.0087 1.9E-07 65.1 8.6 34 179-212 150-188 (372)
426 PRK12339 2-phosphoglycerate ki 96.5 0.0026 5.7E-08 63.1 4.2 29 179-207 4-32 (197)
427 smart00072 GuKc Guanylate kina 96.5 0.032 7E-07 54.6 11.9 24 179-202 3-26 (184)
428 cd03284 ABC_MutS1 MutS1 homolo 96.5 0.021 4.5E-07 57.6 10.7 22 179-200 31-52 (216)
429 COG3265 GntK Gluconate kinase 96.5 0.024 5.2E-07 52.9 10.0 26 185-210 2-27 (161)
430 PF04665 Pox_A32: Poxvirus A32 96.5 0.054 1.2E-06 55.3 13.6 33 180-212 15-49 (241)
431 PF13521 AAA_28: AAA domain; P 96.5 0.0025 5.4E-08 61.0 3.8 26 181-207 2-27 (163)
432 PRK10867 signal recognition pa 96.5 0.15 3.4E-06 56.6 18.2 36 178-213 100-139 (433)
433 PF00488 MutS_V: MutS domain V 96.5 0.048 1E-06 55.7 13.3 24 179-202 44-67 (235)
434 TIGR01425 SRP54_euk signal rec 96.5 0.26 5.6E-06 54.6 19.8 35 178-212 100-137 (429)
435 PRK10875 recD exonuclease V su 96.4 0.013 2.8E-07 67.9 10.1 35 179-213 168-208 (615)
436 PRK09376 rho transcription ter 96.4 0.007 1.5E-07 65.6 7.3 25 179-203 170-194 (416)
437 TIGR02322 phosphon_PhnN phosph 96.4 0.0026 5.6E-08 61.8 3.7 26 179-204 2-27 (179)
438 PRK05973 replicative DNA helic 96.4 0.023 5E-07 58.0 10.7 37 174-210 60-99 (237)
439 PF06144 DNA_pol3_delta: DNA p 96.4 0.015 3.2E-07 55.9 8.9 113 261-383 58-171 (172)
440 cd01867 Rab8_Rab10_Rab13_like 96.4 0.1 2.2E-06 49.7 14.7 22 180-201 5-26 (167)
441 cd03286 ABC_MSH6_euk MutS6 hom 96.4 0.079 1.7E-06 53.5 14.4 23 179-201 31-53 (218)
442 cd00876 Ras Ras family. The R 96.4 0.069 1.5E-06 49.8 13.2 21 181-201 2-22 (160)
443 PRK08233 hypothetical protein; 96.4 0.0037 8.1E-08 60.6 4.6 30 179-208 4-34 (182)
444 PRK14721 flhF flagellar biosyn 96.4 0.12 2.6E-06 57.1 16.8 25 178-202 191-215 (420)
445 PRK06995 flhF flagellar biosyn 96.4 0.036 7.8E-07 62.2 12.8 24 179-202 257-280 (484)
446 PRK14526 adenylate kinase; Pro 96.4 0.0029 6.4E-08 63.5 3.9 28 181-208 3-30 (211)
447 PRK08487 DNA polymerase III su 96.4 0.36 7.9E-06 51.8 20.3 90 328-435 127-216 (328)
448 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.053 1.2E-06 55.4 13.2 38 174-211 17-57 (237)
449 cd04160 Arfrp1 Arfrp1 subfamil 96.4 0.062 1.3E-06 50.9 12.8 22 181-202 2-23 (167)
450 PRK06731 flhF flagellar biosyn 96.4 0.11 2.4E-06 54.1 15.5 33 179-211 76-111 (270)
451 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.029 6.2E-07 56.9 11.0 39 174-212 15-62 (235)
452 cd04145 M_R_Ras_like M-Ras/R-R 96.4 0.07 1.5E-06 50.2 13.1 22 180-201 4-25 (164)
453 COG2884 FtsE Predicted ATPase 96.4 0.055 1.2E-06 52.8 12.0 24 179-202 29-52 (223)
454 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.023 4.9E-07 59.0 10.4 37 174-210 32-71 (259)
455 cd04137 RheB Rheb (Ras Homolog 96.3 0.083 1.8E-06 50.9 13.8 23 179-201 2-24 (180)
456 PF05970 PIF1: PIF1-like helic 96.3 0.014 3.1E-07 63.6 9.2 26 179-204 23-48 (364)
457 cd01122 GP4d_helicase GP4d_hel 96.3 0.03 6.6E-07 58.1 11.4 37 176-212 28-68 (271)
458 PLN02674 adenylate kinase 96.3 0.0073 1.6E-07 61.9 6.4 30 179-208 32-61 (244)
459 KOG1808 AAA ATPase containing 96.3 0.016 3.4E-07 73.1 10.4 46 174-222 439-484 (1856)
460 PLN02199 shikimate kinase 96.3 0.0047 1E-07 64.5 5.1 32 179-210 103-134 (303)
461 cd03223 ABCD_peroxisomal_ALDP 96.3 0.047 1E-06 52.5 11.7 24 179-202 28-51 (166)
462 cd02027 APSK Adenosine 5'-phos 96.3 0.0042 9.1E-08 58.8 4.4 31 180-210 1-34 (149)
463 PRK00889 adenylylsulfate kinas 96.3 0.0053 1.1E-07 59.5 5.1 34 178-211 4-40 (175)
464 PRK07914 hypothetical protein; 96.3 0.074 1.6E-06 56.9 14.4 146 261-436 65-211 (320)
465 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.041 8.9E-07 56.6 11.9 24 179-202 26-49 (246)
466 PRK06067 flagellar accessory p 96.3 0.033 7.2E-07 56.6 11.0 38 174-211 21-61 (234)
467 cd01866 Rab2 Rab2 subfamily. 96.3 0.13 2.7E-06 49.1 14.5 22 180-201 6-27 (168)
468 cd04119 RJL RJL (RabJ-Like) su 96.3 0.084 1.8E-06 49.7 13.1 22 181-202 3-24 (168)
469 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.3 0.12 2.6E-06 49.0 14.2 22 180-201 4-25 (166)
470 COG1122 CbiO ABC-type cobalt t 96.3 0.034 7.3E-07 56.8 10.9 24 179-202 31-54 (235)
471 COG0563 Adk Adenylate kinase a 96.3 0.004 8.6E-08 60.8 3.9 28 180-207 2-29 (178)
472 KOG1051 Chaperone HSP104 and r 96.3 0.023 5.1E-07 67.4 10.9 166 148-351 185-365 (898)
473 PF00406 ADK: Adenylate kinase 96.3 0.0035 7.6E-08 59.2 3.4 27 183-209 1-27 (151)
474 PF06745 KaiC: KaiC; InterPro 96.2 0.015 3.2E-07 58.8 8.2 39 174-212 15-57 (226)
475 COG1125 OpuBA ABC-type proline 96.2 0.031 6.7E-07 56.9 10.1 24 179-202 28-51 (309)
476 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.013 2.9E-07 63.6 8.1 24 179-202 135-158 (358)
477 PLN02165 adenylate isopentenyl 96.2 0.0048 1E-07 65.7 4.6 30 179-208 44-73 (334)
478 cd01130 VirB11-like_ATPase Typ 96.2 0.0036 7.9E-08 61.4 3.5 24 179-202 26-49 (186)
479 PTZ00293 thymidine kinase; Pro 96.2 0.035 7.5E-07 55.5 10.4 33 179-211 5-40 (211)
480 PF01745 IPT: Isopentenyl tran 96.2 0.005 1.1E-07 61.0 4.3 33 179-211 2-34 (233)
481 cd03233 ABC_PDR_domain1 The pl 96.2 0.041 9E-07 54.7 11.0 25 179-203 34-58 (202)
482 PRK14712 conjugal transfer nic 96.2 0.12 2.6E-06 65.4 17.1 165 179-381 853-1024(1623)
483 smart00175 RAB Rab subfamily o 96.2 0.097 2.1E-06 49.2 13.0 21 181-201 3-23 (164)
484 PRK12338 hypothetical protein; 96.2 0.0047 1E-07 65.4 4.2 29 179-207 5-33 (319)
485 COG2805 PilT Tfp pilus assembl 96.2 0.03 6.4E-07 58.2 9.8 34 179-212 126-163 (353)
486 COG1134 TagH ABC-type polysacc 96.2 0.016 3.4E-07 58.6 7.7 25 179-203 54-78 (249)
487 cd03230 ABC_DR_subfamily_A Thi 96.2 0.029 6.4E-07 54.2 9.4 24 179-202 27-50 (173)
488 PRK12608 transcription termina 96.2 0.015 3.2E-07 62.9 7.9 25 179-203 134-158 (380)
489 cd03246 ABCC_Protease_Secretio 96.1 0.059 1.3E-06 52.1 11.5 24 179-202 29-52 (173)
490 cd00154 Rab Rab family. Rab G 96.1 0.16 3.5E-06 46.8 14.2 22 181-202 3-24 (159)
491 PRK09354 recA recombinase A; P 96.1 0.047 1E-06 58.7 11.6 39 174-212 56-97 (349)
492 PRK05541 adenylylsulfate kinas 96.1 0.0045 9.7E-08 60.1 3.5 25 179-203 8-32 (176)
493 cd04177 RSR1 RSR1 subgroup. R 96.1 0.089 1.9E-06 50.1 12.5 23 180-202 3-25 (168)
494 COG0529 CysC Adenylylsulfate k 96.1 0.073 1.6E-06 51.3 11.4 33 179-211 24-59 (197)
495 TIGR02768 TraA_Ti Ti-type conj 96.1 0.03 6.6E-07 66.6 11.0 34 179-213 369-405 (744)
496 cd04136 Rap_like Rap-like subf 96.1 0.1 2.2E-06 49.1 12.7 22 180-201 3-24 (163)
497 PRK09825 idnK D-gluconate kina 96.1 0.0065 1.4E-07 59.2 4.3 27 179-205 4-30 (176)
498 PRK05907 hypothetical protein; 96.1 0.88 1.9E-05 48.5 20.7 91 331-436 129-220 (311)
499 cd01672 TMPK Thymidine monopho 96.1 0.0081 1.7E-07 58.8 5.0 34 180-213 2-38 (200)
500 PF03193 DUF258: Protein of un 96.0 0.0045 9.8E-08 59.2 3.0 45 155-210 23-67 (161)
No 1
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=100.00 E-value=6.4e-68 Score=588.40 Aligned_cols=451 Identities=34% Similarity=0.523 Sum_probs=334.8
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
.+++|+|||+|++++||++|++|+++|+.||+..+. +..+.++|||+|||||||||++++||+++|++++||.++..
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~---~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS---GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc---cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 478999999999999999999999999999998775 33344799999999999999999999999999999987764
Q ss_pred h---hhh--hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH
Q 005987 215 T---IWQ--EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (666)
Q Consensus 215 ~---~~~--e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~ 289 (666)
. .+. ++.........+.++.+.|.+|+.+..+|..+.....+....++||||||+|++...+. ..++++|+.++
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-~~f~~~L~~~l 160 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-SRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-HHHHHHHHHHH
Confidence 1 111 11111112223467788899997777788766432222334578999999999888766 88999999999
Q ss_pred hcCCC-ceEEEEecCCCCCCccc------hhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh-----C-CCC
Q 005987 290 RSTHI-PTAVVLTECGKADSVDS------TAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE-----Q-YSL 356 (666)
Q Consensus 290 ~~~~~-PiViIit~~~~~~s~d~------~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e-----~-i~v 356 (666)
..++. |+|||++++......+. ..+.+. -++++.++++..|.|||++++.|+|+|++||..| + ..+
T Consensus 161 ~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~-~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 161 RSSRCLPLVFIISETESLSGDNSYRSNSFTAERLF-PKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HcCCCCCEEEEEecccccCCCCcccccchhhhhcc-CHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 99888 99999997632111111 111222 1677888899999999999999999999999998 2 233
Q ss_pred C--HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCccccccc-----C-C--CCCCCcc-----ccCCCCCcccccCCccc
Q 005987 357 S--TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLS-----I-S--KPNFPEE-----KADGHGGFSIQFGRDET 421 (666)
Q Consensus 357 ~--~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~-----~-~--~~~~~k~-----~~~~~~~~~~~~~RD~~ 421 (666)
+ .++|+.|++.|+||||+|||+|||+|..+.......+. . . ...+.+. +..+...+..+++||.+
T Consensus 240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~g~~~~~~~k~g~~~~~~~v~~~~ks~~~~~~~~~~~~~~~~~i~~Rd~s 319 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIRSAINNLQFWCLKGDNNLRPKKKGFSLKADAVLSLSKSKRKSKPDTVKEESSLQSIGGRDES 319 (519)
T ss_pred CChHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCCccccCCcccccceeccccCCCcccccccccccccccccccccc
Confidence 3 45699999999999999999999999954332211100 0 0 0001111 11113345678899999
Q ss_pred cchHHHHhHHhhCCCCCCccccc-cccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHH
Q 005987 422 LSLFHALGKFLHNKRETDNLVKM-DQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAW 500 (666)
Q Consensus 422 l~lFhalGkil~~Kr~~~~~~~~-~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~ 500 (666)
|++||||||||||||......+. ..+.++. .+.|.++. ..||+++++++++.++|.+||||||++||.+ |++++
T Consensus 320 L~lFHAlGKILynKR~~~~~~~~~~l~~~l~--~~~R~~l~-~~~e~vi~~s~~~~~~f~~~LhENY~~f~~~--i~~~~ 394 (519)
T PF03215_consen 320 LSLFHALGKILYNKREPDDEVDSERLPSHLS--HHERDPLL-VDPEEVIEESHMDSSTFVLFLHENYLDFCSD--IEDAS 394 (519)
T ss_pred hHHHHHhhhheeccccCCCccccccCcchhh--hcccCccc-cCHHHHHHHhcCChHHHHHHHHHhccchhhh--HHHHH
Confidence 99999999999999988753221 1122222 34566664 4699999999999999999999999999976 99999
Q ss_pred HHHHHhhHhhhccccccCccccccchhHHHHHHHHHHHHHHHhhhCCC-------CCCCCcccccCCcchhhhhhhHHHH
Q 005987 501 AVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAARGVLFGNSH-------PVPPRWHAIRKPKLWRVDQSSLQKK 573 (666)
Q Consensus 501 ~~~d~LS~aD~l~~~~~~~~~~~~~~~~~l~~~a~sva~RGv~~~n~~-------p~~~~~~~~~~P~~~~~~~~~~~~~ 573 (666)
.|+||||+||+|.+.|+. .+.++.|+.++|+||+|++|.. +..++|++++||+||.+.++...+
T Consensus 395 ~~~d~LS~aD~l~~~~~~--------~~~~~~~~~s~a~rg~~~~n~~~~~~~~~~~~~~~~~~~Kpq~~~~~~~~~~~- 465 (519)
T PF03215_consen 395 DASDYLSDADLLSSDWES--------RSSLREYRASVAVRGLMHSNRGKAFFPRQWKMRRFRPLHKPQWFGYYKPYIEN- 465 (519)
T ss_pred HHHHHhhHHHhccCcccc--------chhHHHHHHHHHhhhcchhccCcccCCCcccccccccccchHHHHHHHHHHHH-
Confidence 999999999999876543 2567889999999999987654 334689999999999999887654
Q ss_pred HHHHHhhhccccCCcccccccCCCCCchhhhhhhhhhhhHHhhc
Q 005987 574 KELLKKKFMAWDGSISADVYNGSSSSDVSVLATEYAPALKWLGN 617 (666)
Q Consensus 574 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~lP~l~~i~~ 617 (666)
++..+.+.. ++| ++.-.+.+|++|||..+..
T Consensus 466 -~~~~~~~~~-------~~~-----l~~l~~~~~~~~~l~~~~~ 496 (519)
T PF03215_consen 466 -CLAAKSLFL-------DYC-----LPPLCLQTELLPYLAKLTD 496 (519)
T ss_pred -HHHHHHHHH-------HHh-----hhhhccchhhHHHHHHccc
Confidence 333333322 123 2223689999999999864
No 2
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=4e-66 Score=550.67 Aligned_cols=520 Identities=32% Similarity=0.460 Sum_probs=388.0
Q ss_pred ccccccccccccccccCCCCCc-hhhhchhhhhhccccCCccccccCCCCCCCCccCCCCCCccccccCCCCccccccCH
Q 005987 77 RDLALGSSSRQQLWTNKNKPCS-LEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELAVQR 155 (666)
Q Consensus 77 r~~~~~~~~~~~~w~~~~~~~s-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~eKY~P~sl~eLvg~~ 155 (666)
++..+..+++...|.+.+++.+ ++-+....+||..+-+...+ ..+.......++|+|||+|++++||++|+
T Consensus 17 ~~~~~~~~s~~~r~~s~s~~~~~~~~~d~~~~d~~a~~d~~~~--------~l~~~~~d~~elW~eKy~P~t~eeLAVHk 88 (634)
T KOG1970|consen 17 KKASNIRKSEKPRLSSKSSTTKPSSIPDIHEEDFEAFDDEESV--------HLNNEKEDEFELWVEKYKPRTLEELAVHK 88 (634)
T ss_pred cccccccccccccccCCCCCCCCccccccchhhhhhhchhhhc--------ccCCCCccccchhHHhcCcccHHHHhhhH
Confidence 3334455567777855565555 55556666667665553332 11222334589999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCcc--ccch
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLE--YTSK 233 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~--~~s~ 233 (666)
+|+.+|+.||+ .+.....+.+.++|||+||+||||||++++||+++|+.++||++|....+.+++++...+.. |.++
T Consensus 89 kKI~eVk~WL~-~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~ 167 (634)
T KOG1970|consen 89 KKISEVKQWLK-QVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQ 167 (634)
T ss_pred HhHHHHHHHHH-HHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhH
Confidence 99999999999 22222255556899999999999999999999999999999999998888888888666655 8899
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchh
Q 005987 234 LDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTA 313 (666)
Q Consensus 234 ~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~ 313 (666)
+..|+.|++++.+|+.+..+.....+.+++|||||+|+.+..+.++.++++|+.+...+.+|+|||+|++...+..+++.
T Consensus 168 L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~r 247 (634)
T KOG1970|consen 168 LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDR 247 (634)
T ss_pred HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhh
Confidence 99999999999889988776666666788999999999988877888999999999999999999999988765555544
Q ss_pred hhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 005987 314 QSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS------TEQIDLVAQASGGDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 314 r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~------~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~ 387 (666)
.....++ .++|+..|.|||++++.|+|.|.+||..++.... ...++.|+..++||||+|||+|||++..+.
T Consensus 248 lf~~d~q---~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlssskg~ 324 (634)
T KOG1970|consen 248 LFPKDIQ---EEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLSSSKGE 324 (634)
T ss_pred hchhhhh---hccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccHHHHHhHhhhhcccCc
Confidence 4444444 5678999999999999999999999999987666 688999999999999999999999986665
Q ss_pred CcccccccCCCC----CCCccc---cCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccchhhhhccccCCC
Q 005987 388 PMLNLSLSISKP----NFPEEK---ADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPL 460 (666)
Q Consensus 388 ~~~~~~~~~~~~----~~~k~~---~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl 460 (666)
......++++.. +..+.+ ...++.+..+++||++|.+||++|+++|+||......+...-+..+ +.+.|.++
T Consensus 325 ~~~~~~ks~rs~~s~~~kg~~~~~~s~~nq~i~~ig~~de~L~~f~al~~~l~pkr~s~~~~~s~~~~~~~-a~~~r~~L 403 (634)
T KOG1970|consen 325 NNLRPRKSGRSGKSDIGKGKSKRMESPENQELQSIGGRDESLFLFRALGKVLYPKRNSDNELKSPRSPSHL-AEYERDTL 403 (634)
T ss_pred cCCCcccccccccchhhccccccccCchHHHHHHhhcchHHHHHHHhhcccccccccccccccccCCcchh-hhhhhhhh
Confidence 444433332111 111111 1112356678999999999999999999999887654333222222 55778888
Q ss_pred CCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhccccccCc----------------cc-c-
Q 005987 461 KMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGR----------------LV-R- 522 (666)
Q Consensus 461 ~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~~~~~~----------------~~-~- 522 (666)
+++ ||+|+.++++.+..++.|+|+||++|+.. |++++.+.+++|+||.+...|... ++ .
T Consensus 404 ~~~-peevl~~S~~~~~~~v~fl~~N~~~f~~n--id~i~~~se~~~~~d~~s~~w~~~~~L~~~y~~~~a~rsvm~~n~ 480 (634)
T KOG1970|consen 404 KHE-PEEVLEMSHMQGGNFVRFLHQNYSDFFSN--IDDIVRASEFLSFADQLSGDWNTRQSLLREYRTLIATRSVMNSNK 480 (634)
T ss_pred hcC-chhhhhhcccccchhhhhhhhccchhhhc--ccceeeehhhhhHHHHhcccchhHHHHHHHHHHHHHHHHhhcccc
Confidence 877 99999999999999999999999999987 899999999999999987755211 00 0
Q ss_pred cc----------------------------chhHHHHHHHHHHHHH---HHhhhCC---CCCCCCcccccCCcchhhhhh
Q 005987 523 YN----------------------------EADNVLQSAAASVAAR---GVLFGNS---HPVPPRWHAIRKPKLWRVDQS 568 (666)
Q Consensus 523 ~~----------------------------~~~~~l~~~a~sva~R---Gv~~~n~---~p~~~~~~~~~~P~~~~~~~~ 568 (666)
|. ....+.+..++.+|+| |+++.+- .|.-++|.++++|..|+.+.-
T Consensus 481 y~~p~~~~~~l~n~p~~s~~~~~~~~~~~~~~~~vp~ig~~~~avr~~~gi~~~~di~d~~~~s~~~~~k~p~~~~~~~~ 560 (634)
T KOG1970|consen 481 YAHPQGGQWFLINKPYRSLAAKALFPDFCLQTQLVPRIGLLTVAVRNCAGISFINDIGDLPLISHFGRLKKPKLINREHG 560 (634)
T ss_pred cccccccceeecccccccchhhhcccchhccccccccccchhhhhhccccchhhhhcccccchhhhhhccchhhhhhhhc
Confidence 00 0011112223346666 6666652 344578999999999886655
Q ss_pred hHHHHHHHHHhhhccccCCcccccccCCCCCchhhhhhhhh----hhhHHhhcCCCC
Q 005987 569 SLQKKKELLKKKFMAWDGSISADVYNGSSSSDVSVLATEYA----PALKWLGNRTSV 621 (666)
Q Consensus 569 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~l----P~l~~i~~~~~~ 621 (666)
..+-...+..|+... +.+..+......+|++- |..+++...+++
T Consensus 561 ~~q~e~~l~~q~~~~---------~~g~~~~~~p~~at~~~~~~~p~~~~~~~~~~~ 608 (634)
T KOG1970|consen 561 SIQPESNLEEQYNGG---------YVGRKSLDLPLQATEPETWSLPLSKNSASIAGK 608 (634)
T ss_pred ccchhhhhHHHhcCC---------cccccccCCcceecCcccccCCcccceeeecCc
Confidence 555555666666654 22344445556776766 888888876663
No 3
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.4e-57 Score=508.90 Aligned_cols=509 Identities=26% Similarity=0.366 Sum_probs=346.1
Q ss_pred CCccccccccccccccccccCCCCCc-hhhhchhhhhhccccCCccccccCCC-CCCCC--ccCCCCCCccccccCCCCc
Q 005987 73 VNPKRDLALGSSSRQQLWTNKNKPCS-LEEHAIQKENVGRFLTPSRFEGLVNP-DHDSA--SASSSTQQLWAEKYKPRSL 148 (666)
Q Consensus 73 ~~~~r~~~~~~~~~~~~w~~~~~~~s-~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~--~~~~~~~~~W~eKY~P~sl 148 (666)
.+.+|+..+.+++++++| +..+++| .+..+.+..++- ..+....+.. +.+.. ........+|++||+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pW~eKyrP~~l 83 (637)
T TIGR00602 9 PSFDDFLLSSLISTITKW-SLSRPTSSHRRKNSPSTDIH----ARKRGFLSLEQDTGLELSSENLDGNEPWVEKYKPETQ 83 (637)
T ss_pred cchhhhhhhccccccccc-ccccCcccccccccccccch----hhhccccccchhhhhcCCcccccccCchHHHhCCCCH
Confidence 455666677788888888 5444555 444333332211 1111111100 00000 0011346799999999999
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhc----c
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN----C 224 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~----~ 224 (666)
+||++|++++++|+.|+..... +..+.++++|+|||||||||+++++|+++++.++||.++..+.+....+. .
T Consensus 84 del~~~~~ki~~l~~~l~~~~~---~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~ 160 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL---ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSL 160 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc---ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhh
Confidence 9999999999999999997654 22233689999999999999999999999999999854432222111110 0
Q ss_pred cC-CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH-HHHhcCCCceEEEEec
Q 005987 225 KT-GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL-LLVRSTHIPTAVVLTE 302 (666)
Q Consensus 225 ~~-g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~-~l~~~~~~PiViIit~ 302 (666)
.. ...+.+..+.|..|+.++........ .+..+.++||||||+|++..+.. ..++++|+ .+.+.++.|+|+|+++
T Consensus 161 ~~~~~~~~s~~~~F~~fl~~a~~~~~~~g--~~~~~~~~IILIDEiPn~~~r~~-~~lq~lLr~~~~e~~~~pLI~I~TE 237 (637)
T TIGR00602 161 ESCFSNFQSQIEVFSEFLLRATNKLQMLG--DDLMTDKKIILVEDLPNQFYRDT-RALHEILRWKYVSIGRCPLVFIITE 237 (637)
T ss_pred hhccccccchHHHHHHHHHHHHhhhcccc--cccCCceeEEEeecchhhchhhH-HHHHHHHHHHhhcCCCceEEEEecC
Confidence 01 11235678889999998863221110 11123567999999999875432 34666666 5667788899999887
Q ss_pred CCCCCCcc----chhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCC------C-CHHHHHHHHHHcCCc
Q 005987 303 CGKADSVD----STAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS------L-STEQIDLVAQASGGD 371 (666)
Q Consensus 303 ~~~~~s~d----~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~------v-~~~~l~~Ia~~s~GD 371 (666)
+....... ..++.+- .+++++++++.+|.|+|+++++|+++|.+||..|+.. + ++++++.|+..++||
T Consensus 238 ~~~~~~~~~~~~f~~~~lL-~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIM-NKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred Cccccccccccccchhccc-CHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 53211110 0111110 1567777889999999999999999999999987532 2 468999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcccc----ccc----CCCCCC-CccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccc
Q 005987 372 IRQAITSLQFSSLKQDPMLNL----SLS----ISKPNF-PEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLV 442 (666)
Q Consensus 372 IR~AIn~LQf~~~~~~~~~~~----~~~----~~~~~~-~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~ 442 (666)
||+|||+|||+|.++...... .++ .++..+ ...+..+.+.+..+++||.+|++|||||||||+||......
T Consensus 317 iRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~sl~lfhalgkily~Kr~~~~~~ 396 (637)
T TIGR00602 317 IRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDVSLFLFRALGKILYCKRATLNEL 396 (637)
T ss_pred HHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccchhHHHHHhChhhcccccCcccc
Confidence 999999999998865211100 000 000000 01111123345567999999999999999999999876543
Q ss_pred cccccchhhhhccccCCCCCCChHHHHHhcCCChh-HHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhccccccCccc
Q 005987 443 KMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQAR-PVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLV 521 (666)
Q Consensus 443 ~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~-~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~~~~~~~~ 521 (666)
+....+. .-+.+.|.++ ++.||++++.++++.. +|..||||||++|+.+ +++++.+++|||+||++...|+.
T Consensus 397 ~~~~~p~-~l~~~~r~~l-~~~~~~v~e~~~~~~~~~f~~~lheny~~f~~~--~~~~~~~~~~ls~~D~l~~d~~~--- 469 (637)
T TIGR00602 397 DSPRLPS-HLSELSRDTL-MVGPEEVVEMSHMPGDKTFNLYSHQNYNDFFVE--FDDEVKASEFLNFADILSGDWNT--- 469 (637)
T ss_pred ccCccch-hhhhhcccch-hcChHhhhhhccccHHHHHHHHHhcccchhhhh--hhHHHHHHHHhhHHHhcccchhh---
Confidence 2222111 2255677776 6889999999999997 9999999999999987 99999999999999999887643
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhCCCCC-------CCCcccccCCcchhhhhhhHHHHHHHHHhhhccccCCccccccc
Q 005987 522 RYNEADNVLQSAAASVAARGVLFGNSHPV-------PPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWDGSISADVYN 594 (666)
Q Consensus 522 ~~~~~~~~l~~~a~sva~RGv~~~n~~p~-------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 594 (666)
.+++..|++++|+||+|++|..|. .++|+|+++|+|+..++++.+ .+.....+.. ..+.|
T Consensus 470 -----~~l~~~~~~~~~~r~~m~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----v~~~~- 536 (637)
T TIGR00602 470 -----RSLLREYSTSSARRGVMHSNKARGIAHCQGGKSSFRPLHKPQWFLISKKYRE--NCLAAKALFK-----VEDFC- 536 (637)
T ss_pred -----hhhhcccceeeeeeeEEEecCCccchhcccCccccccccchhhhhhhHHHHH--HHHHHHHHhc-----ccccc-
Confidence 456777899999999999997763 247999999999998876654 3333333321 11222
Q ss_pred CCCCCchhhhhhhhhhhhHHhhc
Q 005987 595 GSSSSDVSVLATEYAPALKWLGN 617 (666)
Q Consensus 595 ~~~~~~~~~~~~e~lP~l~~i~~ 617 (666)
..+..+.++++||+.....
T Consensus 537 ----~~~~~l~~~~~~~~~~~~~ 555 (637)
T TIGR00602 537 ----LPADCLQTQLLPYLALDTI 555 (637)
T ss_pred ----chHHHhcccccceeecccc
Confidence 2345799999999988763
No 4
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=3.5e-46 Score=417.73 Aligned_cols=380 Identities=22% Similarity=0.342 Sum_probs=284.5
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
.+|++||+|++++||+||++.++.|+.|++.|.. |.++ +++||+|||||||||+|+++|+++++.++++|+++.+
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---g~~~-~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r- 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK---GKPK-KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR- 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc---CCCC-CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc-
Confidence 5899999999999999999999999999999874 4443 7999999999999999999999999999999998732
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi 296 (666)
..+.+..++..+.....+ .+ ..++||||||+|++....... ....|..+++....|+
T Consensus 77 ----------------~~~~i~~~i~~~~~~~sl----~~--~~~kvIiIDEaD~L~~~~d~~-~~~aL~~~l~~~~~~i 133 (482)
T PRK04195 77 ----------------TADVIERVAGEAATSGSL----FG--ARRKLILLDEVDGIHGNEDRG-GARAILELIKKAKQPI 133 (482)
T ss_pred ----------------cHHHHHHHHHHhhccCcc----cC--CCCeEEEEecCcccccccchh-HHHHHHHHHHcCCCCE
Confidence 122344455444333222 11 245799999999986533222 2345677777888898
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
|+++++.... ....|++ +|..|.|++++..++.++|..+|..+++.+++++++.|++.++||+|.||
T Consensus 134 Ili~n~~~~~--------~~k~Lrs-----r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 134 ILTANDPYDP--------SLRELRN-----ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred EEeccCcccc--------chhhHhc-----cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 8877653211 1112222 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccchhhhhccc
Q 005987 377 TSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFS 456 (666)
Q Consensus 377 n~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~~~~~~~~ 456 (666)
|.||+++.+..... .+.+..+..||...++|+++++||+++.....
T Consensus 201 n~Lq~~a~~~~~it------------------~~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a---------------- 246 (482)
T PRK04195 201 NDLQAIAEGYGKLT------------------LEDVKTLGRRDREESIFDALDAVFKARNADQA---------------- 246 (482)
T ss_pred HHHHHHhcCCCCCc------------------HHHHHHhhcCCCCCCHHHHHHHHHCCCCHHHH----------------
Confidence 99999775432110 01122345699999999999999997743210
Q ss_pred cCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhccccccCccccccchhHHHHHHHHH
Q 005987 457 RLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAAS 536 (666)
Q Consensus 457 r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~~~~~~~~~~~~~~~~l~~~a~s 536 (666)
-..+....++++.++.|||||||..|.+ +++++.++++||.||+++++++.++ .|. |..|++.
T Consensus 247 ---------~~~~~~~~~~~~~i~~~l~en~~~~~~~--~~~~~~a~~~ls~ad~~~~~~~~~~-~~~-----l~~~~~~ 309 (482)
T PRK04195 247 ---------LEASYDVDEDPDDLIEWIDENIPKEYDD--PEDIARAYDALSRADIFLGRVKRTQ-NYD-----LWRYASD 309 (482)
T ss_pred ---------HHHHHcccCCHHHHHHHHHhccccccCC--HHHHHHHHHHHhHHHHHHHHHHhcC-Ccc-----hHHHHHH
Confidence 0122334568999999999999998876 8999999999999999999987642 343 3456777
Q ss_pred HHHHHHhhhCCCCCCCCcccccCCcchhhhhhhHHHHHHHHHhhhccccCCcccccccCCCCCchhhhhhhhhhhhHHhh
Q 005987 537 VAARGVLFGNSHPVPPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWDGSISADVYNGSSSSDVSVLATEYAPALKWLG 616 (666)
Q Consensus 537 va~RGv~~~n~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~lP~l~~i~ 616 (666)
+++.||++++..| ..+|.++++|+||+...+....+ .+++..... .....++..+.++++|+|||..|.
T Consensus 310 ~m~~gv~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~s~~~~~~~~~~~~~~~~ 378 (482)
T PRK04195 310 LMTAGVALAKEKK-KRGFTRYQPPSYWRLLSKTKEKR-ETRDSIAKK---------IAEKLHTSKRKVRREVLPFLSIIF 378 (482)
T ss_pred HhhhHHHHhcccc-CCCCCCcCCcHHHHHHhhhhHHH-HHHHHHHHH---------HHHHhCCCHHHHHHHHHHHHHHHH
Confidence 7888999988776 46899999999999987654322 222221211 111233445589999999999998
Q ss_pred cCC
Q 005987 617 NRT 619 (666)
Q Consensus 617 ~~~ 619 (666)
...
T Consensus 379 ~~~ 381 (482)
T PRK04195 379 KHN 381 (482)
T ss_pred hcC
Confidence 764
No 5
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.2e-40 Score=364.68 Aligned_cols=399 Identities=18% Similarity=0.252 Sum_probs=292.0
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcC--------------------------CCCCCCccEEEEECCCCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD--------------------------SKDKFSTNVLVITGQAGV 189 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~--------------------------~~g~~~~k~LLL~GPpG~ 189 (666)
..+||+||+|+.|.||++.++..+.+..||+.|... ..++++++++||+||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 459999999999999999999999999999988642 115677899999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCC
Q 005987 190 GKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDL 269 (666)
Q Consensus 190 GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEi 269 (666)
||||+||++|++.||.|+|+||||.+. ...+.+-++.+-...+ ..+...+|.|++||||
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt-----------------~~~v~~kI~~avq~~s----~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERT-----------------APMVKEKIENAVQNHS----VLDADSRPVCLVIDEI 396 (877)
T ss_pred ChhHHHHHHHHhcCceEEEeccccccc-----------------HHHHHHHHHHHHhhcc----ccccCCCcceEEEecc
Confidence 999999999999999999999999542 2345555555543332 2222346889999999
Q ss_pred CCCcchhHHHHHHHHHHHHHhc-----------------------CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc
Q 005987 270 PVTNGRTAFERLRQCLLLLVRS-----------------------THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA 326 (666)
Q Consensus 270 d~l~~~~~~~~l~~~L~~l~~~-----------------------~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~ 326 (666)
|+.. ..+.++|+.+++. -.+||||||++. ++..|++|+.
T Consensus 397 DGa~-----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--------YaPaLR~Lr~----- 458 (877)
T KOG1969|consen 397 DGAP-----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--------YAPALRPLRP----- 458 (877)
T ss_pred cCCc-----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--------cchhhhhccc-----
Confidence 9864 2334445544431 135999999984 4567777776
Q ss_pred CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCcccc
Q 005987 327 GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKA 406 (666)
Q Consensus 327 r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~ 406 (666)
.|.+|.|.|++.+.+.++|+.||.+|++.++..+|..|++.+++|||+|||+|||++.+....... + ..
T Consensus 459 ~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~---i---~~----- 527 (877)
T KOG1969|consen 459 FAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSS---I---SV----- 527 (877)
T ss_pred ceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccccccc---c---hh-----
Confidence 499999999999999999999999999999999999999999999999999999999876542110 0 00
Q ss_pred CCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhh
Q 005987 407 DGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHEN 486 (666)
Q Consensus 407 ~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhEN 486 (666)
+.......+.+|.+.++|..+-.||.-.+...... ..+.+. + -.-....++..+++++.++.|
T Consensus 528 -~~i~a~~~~~k~~~~slf~~w~ei~ql~k~~~~r~--------~~~~l~------~--l~~~~~l~~~servlqg~f~~ 590 (877)
T KOG1969|consen 528 -KLICAKNVGAKSNSDSLFSWWKEIFQLRKKDRHRS--------IDEQLY------G--LLNQVELHGNSERVLQGCFSI 590 (877)
T ss_pred -hhhhhhhhcccccccchHHHHHHHHHHhhcccccc--------hHHHhh------h--hhhhhhccCchHHHHhhhhcc
Confidence 00011245678888899999988887665443110 111110 0 011234567788999999999
Q ss_pred cCC-CCCcchHHHHHHHHHHhhHhhhccccccCccccccchhHHHHHHHHHHHHHHHhhhCCCCCCCCcccccCCcchhh
Q 005987 487 FLD-FISEDAIDDAWAVASYLSDADLLLASFRGRLVRYNEADNVLQSAAASVAARGVLFGNSHPVPPRWHAIRKPKLWRV 565 (666)
Q Consensus 487 y~~-f~~d~~i~~~~~~~d~LS~aD~l~~~~~~~~~~~~~~~~~l~~~a~sva~RGv~~~n~~p~~~~~~~~~~P~~~~~ 565 (666)
|+. .|.|-.|..++.+++||-+-|.+....+.. ++|. ++.+.......+-++|+..++ .++-+|+.-+.
T Consensus 591 ~~~~~~~D~~i~~~~~~s~WL~F~D~l~~~~~s~-qn~e----LlrY~~~~~l~fh~l~at~~~-----~~i~~p~~~q~ 660 (877)
T KOG1969|consen 591 FLRLKYSDLGIGKPANASDWLFFHDLLYQSMYSH-QNWE----LLRYSPSVPLHFHQLFATIAN-----KRIIRPKNSQY 660 (877)
T ss_pred ccccccccccccchhhhhhHHHhhhHHHHHHHhc-CCee----ecccccchhHHHHHHhcccCC-----cccCCCchhHH
Confidence 998 567778999999999999999998876542 3443 233334445566788887776 36788888888
Q ss_pred hhhhHHHHHHHHHhhhccccCCcccccccCCCCCchhhhhhhhhhhhHHhhcC
Q 005987 566 DQSSLQKKKELLKKKFMAWDGSISADVYNGSSSSDVSVLATEYAPALKWLGNR 618 (666)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~lP~l~~i~~~ 618 (666)
.+..+.+.++.+.....++.. + .+.......+..+++++|-.|.++
T Consensus 661 ~~~kl~~~~e~i~s~is~i~s------~-~~~~~~~ksllldli~~iL~il~P 706 (877)
T KOG1969|consen 661 EQRKLKRANEDIVSLISRIIS------Y-QGPLAASKSLLLDLIFEILPILDP 706 (877)
T ss_pred HHHHHHHHHHHHHHHHHhccc------c-cccccchHHHHHHHHHHHHHhcCC
Confidence 888888888888775554110 1 122222346888888888888766
No 6
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.97 E-value=3.3e-30 Score=259.76 Aligned_cols=208 Identities=23% Similarity=0.395 Sum_probs=157.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC------cEEEE
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA------RLYEW 209 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~------~viE~ 209 (666)
...|++||||++++|++||+..+..|++.+.+ +.. .++|||||||||||++|+++|+++.. .+++.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~------~~l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR------RIL--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh------cCC--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 45699999999999999999999999998886 233 38999999999999999999999965 57888
Q ss_pred cCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCC-CCCceEEEEeCCCCCcchhHHHHHHHHHHH
Q 005987 210 DTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGE-SKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (666)
Q Consensus 210 nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~-~~~~~IIlIDEid~l~~~~~~~~l~~~L~~ 287 (666)
|+++ .+|+.. ..+...|........ ...+. ..+.+||||||+|.+... .+.+|..
T Consensus 95 naSd-----------erGisvvr~Kik~fakl~~~~~-------~~~~~~~~~fKiiIlDEcdsmtsd-----aq~aLrr 151 (346)
T KOG0989|consen 95 NASD-----------ERGISVVREKIKNFAKLTVLLK-------RSDGYPCPPFKIIILDECDSMTSD-----AQAALRR 151 (346)
T ss_pred cccc-----------cccccchhhhhcCHHHHhhccc-------cccCCCCCcceEEEEechhhhhHH-----HHHHHHH
Confidence 8887 345442 122222322211110 01121 234489999999987532 2334555
Q ss_pred HHhc-CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 288 LVRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 288 l~~~-~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.++. .+.-.+|++++ +..+.+.++.+ ||..++|.++....+.++|+.||.+|++.+++++++.|+.
T Consensus 152 ~mE~~s~~trFiLIcn--------ylsrii~pi~S-----RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 152 TMEDFSRTTRFILICN--------YLSRIIRPLVS-----RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK 218 (346)
T ss_pred HHhccccceEEEEEcC--------ChhhCChHHHh-----hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5554 33345666666 34566666655 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCC
Q 005987 367 ASGGDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~~~ 387 (666)
.|+||+|.||+.||-++..+.
T Consensus 219 ~S~GdLR~Ait~Lqsls~~gk 239 (346)
T KOG0989|consen 219 ISDGDLRRAITTLQSLSLLGK 239 (346)
T ss_pred HcCCcHHHHHHHHHHhhccCc
Confidence 999999999999999987543
No 7
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.96 E-value=2e-29 Score=244.05 Aligned_cols=206 Identities=20% Similarity=0.390 Sum_probs=161.9
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-C----CcEEEE
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-G----ARLYEW 209 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g----~~viE~ 209 (666)
...+|+|||||..+.|++|++..++.|.-+.++ |+.| +++|+|||||||||.+.+||+++ | --++|+
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~------gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE------GNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHc------CCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 356799999999999999999999999998887 7777 79999999999999999999998 3 247899
Q ss_pred cCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH
Q 005987 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (666)
Q Consensus 210 nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~ 289 (666)
|+|| .+|+.+. ...++.|-++- -.++ .++.+|||+||+|.+... +.+.++..++.+.
T Consensus 85 NASd-----------eRGIDvV--Rn~IK~FAQ~k---v~lp------~grhKIiILDEADSMT~g-AQQAlRRtMEiyS 141 (333)
T KOG0991|consen 85 NASD-----------ERGIDVV--RNKIKMFAQKK---VTLP------PGRHKIIILDEADSMTAG-AQQALRRTMEIYS 141 (333)
T ss_pred cCcc-----------ccccHHH--HHHHHHHHHhh---ccCC------CCceeEEEeeccchhhhH-HHHHHHHHHHHHc
Confidence 9998 4565531 11233332221 1111 134579999999987543 3455666677776
Q ss_pred hcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 290 ~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
..+++ .++++ ...+.++++++ ||..++|..+++.++.++|..+++.|++.++++.+++|+..++
T Consensus 142 ~ttRF---alaCN--------~s~KIiEPIQS-----RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~ 205 (333)
T KOG0991|consen 142 NTTRF---ALACN--------QSEKIIEPIQS-----RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ 205 (333)
T ss_pred ccchh---hhhhc--------chhhhhhhHHh-----hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc
Confidence 66664 33333 23467888887 6999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCC
Q 005987 370 GDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 370 GDIR~AIn~LQf~~~~~~ 387 (666)
||+|+|+|+||....+..
T Consensus 206 GDMRQalNnLQst~~g~g 223 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFG 223 (333)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999776543
No 8
>PLN03025 replication factor C subunit; Provisional
Probab=99.95 E-value=1.3e-26 Score=246.98 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=186.6
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~na 211 (666)
.+|++||||++++|++||+..++.|+.++.. ++.+ ++||+|||||||||+|+++|+++. ..++|+|+
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARD------GNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhc------CCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 3799999999999999999999999988775 4554 699999999999999999999982 34788888
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhc
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS 291 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~ 291 (666)
++.+ |. +.+++.+......... .. ....+||+|||+|.+... + +++|+.+++.
T Consensus 73 sd~~-----------~~------~~vr~~i~~~~~~~~~---~~--~~~~kviiiDE~d~lt~~-a----q~aL~~~lE~ 125 (319)
T PLN03025 73 SDDR-----------GI------DVVRNKIKMFAQKKVT---LP--PGRHKIVILDEADSMTSG-A----QQALRRTMEI 125 (319)
T ss_pred cccc-----------cH------HHHHHHHHHHHhcccc---CC--CCCeEEEEEechhhcCHH-H----HHHHHHHHhc
Confidence 7621 21 2333333322211110 01 123579999999998643 2 2334444443
Q ss_pred C-CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 005987 292 T-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (666)
Q Consensus 292 ~-~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G 370 (666)
. ..-.++++++. ..+.+++|++ ||..++|.+++.+++.++|.++|.+|++.+++++++.|+..++|
T Consensus 126 ~~~~t~~il~~n~--------~~~i~~~L~S-----Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 126 YSNTTRFALACNT--------SSKIIEPIQS-----RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred ccCCceEEEEeCC--------ccccchhHHH-----hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2 11123344431 1234445554 58999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccchh
Q 005987 371 DIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFV 450 (666)
Q Consensus 371 DIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~~ 450 (666)
|+|.|+|.||.++.+...... +.+..+.+......+|..+..+...... .
T Consensus 193 DlR~aln~Lq~~~~~~~~i~~------------------~~v~~~~~~~~~~~i~~~i~~~~~~~~~-~----------- 242 (319)
T PLN03025 193 DMRQALNNLQATHSGFGFVNQ------------------ENVFKVCDQPHPLHVKNIVRNCLKGKFD-D----------- 242 (319)
T ss_pred CHHHHHHHHHHHHhcCCCCCH------------------HHHHHHcCCCCHHHHHHHHHHHHcCCHH-H-----------
Confidence 999999999977653211000 0011223445555677777666543210 0
Q ss_pred hhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCC-CCcchHHHHHHHHHHhhHhhhccc
Q 005987 451 VKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDF-ISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 451 ~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f-~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
... .-.+++ ..+.++..++..||+-.... +++ ..-..++.+++++|.-+.
T Consensus 243 a~~----------~l~~ll-~~g~~~~~Il~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 293 (319)
T PLN03025 243 ACD----------GLKQLY-DLGYSPTDIITTLFRVVKNYDMPE---FLKLEYLREIGFAHMRIC 293 (319)
T ss_pred HHH----------HHHHHH-HcCCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHH
Confidence 000 012333 33777888888785433222 122 223457788888888665
No 9
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=1.2e-25 Score=245.31 Aligned_cols=215 Identities=13% Similarity=0.246 Sum_probs=151.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTP 214 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~ 214 (666)
-++|++||||++|+|++||+..++.|+.++.. ++.+ +.+||+|||||||||+|+++|+.+++.-.. ......
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~------~ri~-ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKS------GKIG-HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 57899999999999999999999999999986 5555 679999999999999999999999764210 000000
Q ss_pred hhhhhhhhcc----cCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 215 TIWQEYMHNC----KTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~----~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+.....+... ...+. .....+.++++++.+. +... .++.+|+||||++++... + .++|+..
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~-~~p~-------~g~~KV~IIDEah~Ls~~-A----~NALLKt 144 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVK-FAPM-------GGKYKVYIIDEVHMLTDQ-S----FNALLKT 144 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHH-hhhh-------cCCCEEEEEechhhcCHH-H----HHHHHHH
Confidence 0000000000 00000 0123456677766654 2111 124579999999988642 2 3445666
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....++||.+.+. ..+.+..|+ + ||+.+.|.+++..++.++|+++|..+++.++++++..|++.+
T Consensus 145 LEEPp~~viFILaTte-------~~kI~~TI~---S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPPAHIVFILATTE-------FHKIPETIL---S--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCCCceEEEeecCC-------hhhccHHHH---h--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6776556666654432 122333333 3 599999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHH
Q 005987 369 GGDIRQAITSLQFS 382 (666)
Q Consensus 369 ~GDIR~AIn~LQf~ 382 (666)
+||+|.|++.|+-+
T Consensus 213 ~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 213 DGSVRDMLSFMEQA 226 (484)
T ss_pred CChHHHHHHHHHHH
Confidence 99999999999653
No 10
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=1.3e-25 Score=253.01 Aligned_cols=214 Identities=21% Similarity=0.321 Sum_probs=149.4
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-+.|++||||++|+||+||++.++.|++|+.. ++.+ +.+||+||+||||||+++.||+.++++.-. ....+
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~------gRL~-HAyLFtGPpGvGKTTlAriLAKaLnCe~~~--~~~PC 73 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDG------GRLH-HAYLFTGTRGVGKTTLSRIFAKALNCETGV--TSQPC 73 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCccCC--CCCCC
Confidence 45699999999999999999999999999985 5665 688999999999999999999999864210 01111
Q ss_pred hhhhhhhcccCC-----c----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTG-----L----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g-----~----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+..+.....| + ......++++++++.+. |... ..+.+||||||+|++... .++ .|+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~-~~P~-------~gr~KVIIIDEah~LT~~-A~N----ALL 140 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAV-YAPV-------DARFKVYMIDEVHMLTNH-AFN----AML 140 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHH-hccc-------cCCceEEEEeChhhCCHH-HHH----HHH
Confidence 100000000000 0 01234567777777664 3211 124579999999998643 334 355
Q ss_pred HHHhcCCCce-EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 287 LLVRSTHIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 287 ~l~~~~~~Pi-ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
+.++.....+ +|++++ + ..+.+..|++ ||..|.|++++.++|.++|++||..|++.++++.+..|+
T Consensus 141 KtLEEPP~~v~FILaTt-d-------~~KIp~TIrS-----RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA 207 (830)
T PRK07003 141 KTLEEPPPHVKFILATT-D-------PQKIPVTVLS-----RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA 207 (830)
T ss_pred HHHHhcCCCeEEEEEEC-C-------hhhccchhhh-----heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555543223 333333 1 1233333443 599999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHH-HHHhc
Q 005987 366 QASGGDIRQAITSL-QFSSL 384 (666)
Q Consensus 366 ~~s~GDIR~AIn~L-Qf~~~ 384 (666)
..++||+|.||+.| |.++.
T Consensus 208 ~~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 208 RAAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred HHcCCCHHHHHHHHHHHHHh
Confidence 99999999999985 55544
No 11
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=6e-25 Score=245.52 Aligned_cols=247 Identities=20% Similarity=0.300 Sum_probs=165.4
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
+.|++||||++|+||+||+..++.|..|+.. ++.+ +.+||+||+||||||+|+++|+.+++.- .....++.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~------grl~-HAyLF~GPpGvGKTTlAriLAK~LnC~~--~~~~~pCg 73 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALER------GRLH-HAYLFTGTRGVGKTTIARILAKCLNCET--GVTSTPCE 73 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCc--CCCCCCCc
Confidence 5699999999999999999999999999986 6666 7899999999999999999999997631 00111111
Q ss_pred hhhhhhcccCCc---------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHH
Q 005987 217 WQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (666)
Q Consensus 217 ~~e~l~~~~~g~---------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~ 287 (666)
.+..+.....|. ......+.++++++.+. |... .++.+|+||||+++++.. ++ ++|+.
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~-y~P~-------~gk~KV~IIDEVh~LS~~-A~----NALLK 140 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVP-YAPT-------QGRFKVYLIDEVHMLSTH-SF----NALLK 140 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHh-hhhh-------cCCcEEEEEechHhcCHH-HH----HHHHH
Confidence 100000000000 00234567788877664 3211 124579999999988653 23 34666
Q ss_pred HHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 288 l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
+++.....+.||++... ..+.. ..+++ ||..+.|.+++..++.++|.+||.++++.++++++..|+..
T Consensus 141 tLEEPP~~v~FILaTtd-------~~kIp---~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 141 TLEEPPEHVKFLFATTD-------PQKLP---ITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHhcCCCCcEEEEEECC-------hHhhh---HHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66664433333333211 11222 23333 59999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHH-HHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCC
Q 005987 368 SGGDIRQAITSL-QFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435 (666)
Q Consensus 368 s~GDIR~AIn~L-Qf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~K 435 (666)
++||+|.|+|.| |.++.+.+. .. .+.-...++..|.. .+|+.+..|+.++
T Consensus 209 S~GdLRdALnLLDQaIayg~g~-IT----------------~edV~~lLG~~d~e-~IfdLldAI~k~d 259 (702)
T PRK14960 209 AQGSLRDALSLTDQAIAYGQGA-VH----------------HQDVKEMLGLIDRT-IIYDLILAVHQNQ 259 (702)
T ss_pred cCCCHHHHHHHHHHHHHhcCCC-cC----------------HHHHHHHhccCCHH-HHHHHHHHHHhcC
Confidence 999999999997 444432211 10 00001123444544 5888888888764
No 12
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.2e-24 Score=240.10 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=150.4
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-+.|++||||++|+||+||+..++.|++++.. ++.+ +.+||+||+||||||+|+++|+.+++.-- ....++
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~------~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~~pC 73 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQ------QYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKG--VSANPC 73 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHh------CCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCC--CCcccC
Confidence 46799999999999999999999999999986 6666 67999999999999999999999976410 000111
Q ss_pred hhhhhhhcccCC---------ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g---------~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+..+.....| .......+.++++++.+. |... .++.+|+||||+|+++.. +++ +|+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~-~~p~-------~~~~kV~iIDE~~~ls~~-a~n----aLL 140 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIP-YAPT-------KGRFKVYLIDEVHMLSGH-SFN----ALL 140 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHh-hccc-------cCCcEEEEEEChHhcCHH-HHH----HHH
Confidence 100000000000 001234567777777664 3211 124679999999998653 334 455
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....++||+..+. ..+.+..+. + ||..+.|.+++..++.+.|..++.++++.+++++++.|+.
T Consensus 141 k~LEepp~~~~fIlattd-------~~kl~~tI~---S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 141 KTLEEPPSHVKFILATTD-------HHKLPVTVL---S--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHhccCCCeEEEEEECC-------hHhchHHHH---H--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 566654333433333211 122333333 3 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHh
Q 005987 367 ASGGDIRQAITSLQFSS 383 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~ 383 (666)
.++||+|.|++.|+-++
T Consensus 209 ~s~GslR~al~lLdq~i 225 (509)
T PRK14958 209 AANGSVRDALSLLDQSI 225 (509)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 99999999999995433
No 13
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.92 E-value=1.1e-24 Score=252.47 Aligned_cols=398 Identities=18% Similarity=0.246 Sum_probs=258.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC--------CCCCCcc-EEEEECCCCchHHHHHHHHHHHcCCcE
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS--------KDKFSTN-VLVITGQAGVGKTATVRQIASHLGARL 206 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~--------~g~~~~k-~LLL~GPpG~GKTtla~~LAkelg~~v 206 (666)
...|+++|+|++..+++++......+..||..|-... .+... . .++++||||+|||++++++|+++|+.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~-~~~~l~~G~pGigKT~~~h~~~k~~g~~v 385 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSK-KKALLLSGPPGIGKTTAAHKAAKELGFKV 385 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhh-HHHHHhcCCCCCCchhhHhhhhhhcccce
Confidence 5789999999999999999999999999999883221 01111 2 579999999999999999999999999
Q ss_pred EEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 207 YEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 207 iE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
+|.|+++.|.-....... ....-.. .+.... ..++. -........|||+||+|.+++ .+.+ +...|-
T Consensus 386 ~E~Nas~~RSk~~l~~~~-~~~~~s~---si~~~~---~~~~~----~~~~~~~~~vil~devD~~~~-~dRg-~v~~l~ 452 (871)
T KOG1968|consen 386 VEKNASDVRSKKELLNKL-GNATSSH---SIKGSK---KKKGN----RQSLNSDHFLILMDEVDGMFG-EDRG-GVSKLS 452 (871)
T ss_pred eecCccccccccHHHhhh-hcccccc---chhhhh---ccccc----ccccccceeEEEEeccccccc-hhhh-hHHHHH
Confidence 999999865322111110 0000000 000000 00110 000112345999999999987 4433 444577
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.++.....|+|++|++.+.+. .+.+.+ -|..|+|..|....+..+|..||..|++.+++..++.|++
T Consensus 453 ~l~~ks~~Piv~~cndr~~p~-----------sr~~~~--~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~ 519 (871)
T KOG1968|consen 453 SLCKKSSRPLVCTCNDRNLPK-----------SRALSR--ACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISK 519 (871)
T ss_pred HHHHhccCCeEEEecCCCCcc-----------ccchhh--hcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHH
Confidence 788888899999999976542 222221 3789999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccc
Q 005987 367 ASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQ 446 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~ 446 (666)
.++||||.+|++|||++........ .++.. ......++..+..|++..++|...|.....
T Consensus 520 ~~~~DiR~~i~~lq~~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~~d~~~~~L~~~~~~s~~----- 579 (871)
T KOG1968|consen 520 LSGGDIRQIIMQLQFWSLSKPAELP---------KKKGT------PIKTSKKNITVKDFDAAEGLLDISRVASEE----- 579 (871)
T ss_pred hcccCHHHHHHHHhhhhccchhhhc---------cccCc------cccccccccccchhHHHhhhccHhhhhhhh-----
Confidence 9999999999999999865322111 00000 001123788889999999999833321100
Q ss_pred cchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCc------chHHHHHHHHHHhhHhhhccccccCcc
Q 005987 447 DAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISE------DAIDDAWAVASYLSDADLLLASFRGRL 520 (666)
Q Consensus 447 ~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d------~~i~~~~~~~d~LS~aD~l~~~~~~~~ 520 (666)
.... . -.+++..+......++.+||+..-.+ ..+++++++.|.+|..|+...++++..
T Consensus 580 --~~~~----------~----k~~~~~ed~~~~p~~v~~n~~~~~~~~~~~~~~~l~~~~~~ad~is~~d~~~~~~r~~~ 643 (871)
T KOG1968|consen 580 --TSNQ----------S----KAELYFEDYSISPLKVQENYLQVLPRSMKQILDELEDVSEAADSISLGDLRPKSIRGPE 643 (871)
T ss_pred --hhcc----------c----hHHHhccccccchhhcchhhhcccchhhhhhHHHHHHHhhhhhhhhhhhhcchhhcCcc
Confidence 0000 0 01122224566678889999886543 245688899999999999999888754
Q ss_pred cccc--chhHHHHHHHHHHHHHHHhhhCCCCCCCCcccccCCcchhhhhhhHHHHHHHHHhhhccccCCcccccccCCCC
Q 005987 521 VRYN--EADNVLQSAAASVAARGVLFGNSHPVPPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWDGSISADVYNGSSS 598 (666)
Q Consensus 521 ~~~~--~~~~~l~~~a~sva~RGv~~~n~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 598 (666)
..|. ....+++..-..+++.| + .-+++.+|+|+..+.+... ...++.....+ ......
T Consensus 644 ~~~~L~~~~a~~s~~~p~~~~~~------~----~~~~i~f~~~~~~~sk~~~-~~~~l~el~~h---------~~~~~s 703 (871)
T KOG1968|consen 644 LDWKLNPLHAVDSKVLPASKVGG------H----LLFRLGFPQWLGENSKSGK-LKRFLQELLPH---------TRLKQS 703 (871)
T ss_pred chhhhhhhhhhhhhhcchhhhhh------c----cccccccccccCccccccc-hhHHHHHhchh---------hhhhhc
Confidence 4342 22222222222222222 2 2357889999888776554 33455444433 111223
Q ss_pred CchhhhhhhhhhhhHHhh
Q 005987 599 SDVSVLATEYAPALKWLG 616 (666)
Q Consensus 599 ~~~~~~~~e~lP~l~~i~ 616 (666)
.+...++..|.|.++...
T Consensus 704 ~~~~~~~~~y~~i~~~~~ 721 (871)
T KOG1968|consen 704 ANKARVRESYNPISRQFS 721 (871)
T ss_pred cchhhhhhhhhhhhhhcc
Confidence 344568888988888765
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.2e-24 Score=223.08 Aligned_cols=200 Identities=26% Similarity=0.394 Sum_probs=158.4
Q ss_pred CccccccCCCCccccccCHHHHHH---HHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEE---VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~e---l~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
+++.++.||++++|++||++.+.+ |++.++. +..+ .++|||||||||||+|++||+..+..+.++++..
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------~~l~--SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------GHLH--SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc------CCCc--eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 589999999999999999998855 5555554 5554 8999999999999999999999999999999853
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~ 293 (666)
+..++++.+++++++... .+++.||||||+++++.. -++.|+..++.+
T Consensus 84 ------------------~gvkdlr~i~e~a~~~~~--------~gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G- 131 (436)
T COG2256 84 ------------------SGVKDLREIIEEARKNRL--------LGRRTILFLDEIHRFNKA-----QQDALLPHVENG- 131 (436)
T ss_pred ------------------ccHHHHHHHHHHHHHHHh--------cCCceEEEEehhhhcChh-----hhhhhhhhhcCC-
Confidence 345688999999866542 135689999999987542 245688888888
Q ss_pred CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CCC-----CCHHHHHHHHH
Q 005987 294 IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYS-----LSTEQIDLVAQ 366 (666)
Q Consensus 294 ~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i~-----v~~~~l~~Ia~ 366 (666)
.|++++.++.+++. +--..+++ ||.++.|.|++.+++.++|++.+..+ ++. +++++++.|+.
T Consensus 132 --~iilIGATTENPsF-------~ln~ALlS--R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~ 200 (436)
T COG2256 132 --TIILIGATTENPSF-------ELNPALLS--RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR 200 (436)
T ss_pred --eEEEEeccCCCCCe-------eecHHHhh--hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH
Confidence 45666666655432 21233333 59999999999999999999955543 333 78999999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCC
Q 005987 367 ASGGDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~~~ 387 (666)
.++||.|.|+|.|+++.....
T Consensus 201 ~s~GD~R~aLN~LE~~~~~~~ 221 (436)
T COG2256 201 LSNGDARRALNLLELAALSAE 221 (436)
T ss_pred hcCchHHHHHHHHHHHHHhcC
Confidence 999999999999999986543
No 15
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=6.5e-24 Score=243.49 Aligned_cols=213 Identities=20% Similarity=0.300 Sum_probs=152.0
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-..|++||||++|+||+||++.++.|++++.. ++++ +.+||+|||||||||+|+++|+.+++.-. ++. .++
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~------~rl~-HAyLFtGPpGtGKTTLARiLAk~Lnce~~-~~~-~pC 73 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQ------QRLH-HAYLFTGTRGVGKTSLARLFAKGLNCEQG-VTA-TPC 73 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh------CCCC-eEEEEECCCCCCHHHHHHHHHHhccCccC-CCC-CCC
Confidence 36799999999999999999999999999886 6666 67899999999999999999999987511 110 011
Q ss_pred hhhhhhhcccCC-----c----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTG-----L----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g-----~----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+..+.....| + ......+.++++++.+.... . .++.+|+||||++.+... .+++|+
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P-~-------~gk~KViIIDEAh~LT~e-----AqNALL 140 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP-S-------RGRFKVYLIDEVHMLSRS-----SFNALL 140 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh-h-------cCCcEEEEEechHhcCHH-----HHHHHH
Confidence 100000000000 0 00234667788777664221 1 124679999999998532 234566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
+.++.....++||++.+.. .+.+ ..+++ ||.+++|++++.+++.++|++++..+++.+++++++.|+.
T Consensus 141 KtLEEPP~~vrFILaTTe~-------~kLl---~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~ 208 (944)
T PRK14949 141 KTLEEPPEHVKFLLATTDP-------QKLP---VTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAK 208 (944)
T ss_pred HHHhccCCCeEEEEECCCc-------hhch---HHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6777655445555543221 1233 33343 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHH
Q 005987 367 ASGGDIRQAITSLQFS 382 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~ 382 (666)
.++||+|.|++.|+.+
T Consensus 209 ~S~Gd~R~ALnLLdQa 224 (944)
T PRK14949 209 AANGSMRDALSLTDQA 224 (944)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 9999999999998543
No 16
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.1e-24 Score=239.29 Aligned_cols=213 Identities=22% Similarity=0.295 Sum_probs=149.8
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-Ec--CC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WD--TP 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~n--as 212 (666)
-+.|.+||||++|+||+||+..++.|++++.. ++.+ +.+||+||+||||||+++.||+.+++.--. .. .+
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~------gRLp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQ------QRLH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHh------CCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 46799999999999999999999999999987 6666 789999999999999999999999873100 00 00
Q ss_pred CchhhhhhhhcccCC-----cc----ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTG-----LE----YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g-----~~----~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
.++..+..+.....| +. .....++++++++.+.... . .++.+|+||||+|+++.. .++
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P-~-------~gr~KViIIDEah~Ls~~-AaN---- 142 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP-T-------AGRFKVYMIDEVHMLTNH-AFN---- 142 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch-h-------cCCceEEEEEChHhcCHH-HHH----
Confidence 011111100000000 00 1234567777777664221 1 124679999999998643 334
Q ss_pred HHHHHHhcCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 284 CLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 284 ~L~~l~~~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
.|++.++.... -++|++++. ..+.+..|++ ||..+.|++++.+++.++|++||..|++.+++++++
T Consensus 143 ALLKTLEEPP~~v~FILaTte--------p~kLlpTIrS-----RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~ 209 (700)
T PRK12323 143 AMLKTLEEPPEHVKFILATTD--------PQKIPVTVLS-----RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALR 209 (700)
T ss_pred HHHHhhccCCCCceEEEEeCC--------hHhhhhHHHH-----HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45555665432 234444431 2233334443 599999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHH
Q 005987 363 LVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 363 ~Ia~~s~GDIR~AIn~LQf 381 (666)
.|+..++|++|.|++.|+.
T Consensus 210 ~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 210 LLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 9999999999999998754
No 17
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2e-23 Score=230.54 Aligned_cols=198 Identities=23% Similarity=0.364 Sum_probs=150.7
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc------------
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR------------ 205 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~------------ 205 (666)
.|..||||++|+||+||+..++.+++++.. ++.+ +.+||+||+|+||||+|+++|+.+++.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~------~ri~-ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTL------NKIP-QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 488999999999999999999999988875 6666 789999999999999999999988543
Q ss_pred ------------EEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc
Q 005987 206 ------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN 273 (666)
Q Consensus 206 ------------viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~ 273 (666)
++|+++++ ....++++++++.+...+ . . .+.+|+||||++++.
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-----------------~~~vddIR~Iie~~~~~P-~----~---~~~KVvIIDEah~Ls 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-----------------NTSVDDIKVILENSCYLP-I----S---SKFKVYIIDEVHMLS 129 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-----------------CCCHHHHHHHHHHHHhcc-c----c---CCceEEEEeChHhCC
Confidence 23333221 234567888887774332 1 1 246799999999886
Q ss_pred chhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhC
Q 005987 274 GRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ 353 (666)
Q Consensus 274 ~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~ 353 (666)
.. +++ .|+.+++.....+++|+..+. ..+... .+.+ ||..+.|.+++..++.+.|.+++.+++
T Consensus 130 ~~-A~N----aLLK~LEePp~~v~fIlatte-------~~Kl~~---tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 130 NS-AFN----ALLKTLEEPAPHVKFILATTE-------VKKIPV---TIIS--RCQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred HH-HHH----HHHHHHhCCCCCeEEEEEeCC-------hHHHHH---HHHH--hheeeecccccHHHHHHHHHHHHHHcC
Confidence 42 333 466666665444444444321 112222 2333 599999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 354 YSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 354 i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
+.+++++++.|++.++||+|.|++.|+-++.
T Consensus 193 i~i~~eAL~lIa~~s~GslR~alslLdqli~ 223 (491)
T PRK14964 193 IEHDEESLKLIAENSSGSMRNALFLLEQAAI 223 (491)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999977664
No 18
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2.3e-23 Score=230.87 Aligned_cols=199 Identities=18% Similarity=0.319 Sum_probs=146.1
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc-----------
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----------- 205 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~----------- 205 (666)
+.|.+||||++++|++||++.++.+..++.. ++.+ +.+||+|||||||||+|+++|+.+++.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~------~~l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKK------NSIS-HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3589999999999999999999999888875 5555 679999999999999999999998753
Q ss_pred -------------EEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCC
Q 005987 206 -------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVT 272 (666)
Q Consensus 206 -------------viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l 272 (666)
+++++++. ....+.++.+.+.+.... . . ...+||||||++.+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~-----------------~~gid~iR~i~~~~~~~p-~----~---~~~kVvIIDE~h~L 129 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS-----------------NRGIDEIRKIRDAVGYRP-M----E---GKYKVYIIDEVHML 129 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc-----------------cCCHHHHHHHHHHHhhCh-h----c---CCeEEEEEEChHHh
Confidence 33333221 122456666665553221 1 1 23579999999987
Q ss_pred cchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh
Q 005987 273 NGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE 352 (666)
Q Consensus 273 ~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e 352 (666)
... .++.|+..++.....+++|++.++. .+ +...+.+ ||..+.|.+++..++.++|++++..+
T Consensus 130 t~~-----a~~~LLk~LE~p~~~vv~Ilattn~-------~k----l~~~L~S-R~~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 130 TKE-----AFNALLKTLEEPPSHVVFVLATTNL-------EK----VPPTIIS-RCQVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred HHH-----HHHHHHHHHHhCCCcEEEEEEeCCh-------Hh----hhHHHhc-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence 432 2334555666543334444332211 11 2222222 69999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 353 QYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 353 ~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
++.+++++++.|+..++||+|.|+|.|+.++.
T Consensus 193 gi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 193 GIEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998664
No 19
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=4e-23 Score=233.10 Aligned_cols=214 Identities=18% Similarity=0.273 Sum_probs=153.0
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhh
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~ 217 (666)
.|++||||++|+||+||+..++.|+.++.. ++.+ +.+||+||+||||||+|+++|+.+++.-- ....++..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~------~r~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~~pCg~ 72 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDA------GRIN-HAYLFSGPRGCGKTSSARILARSLNCAQG--PTATPCGV 72 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhccccC--CCCCcccc
Confidence 478999999999999999999999999986 6666 67899999999999999999999976310 00011111
Q ss_pred hhhhhccc---CC--------ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 218 QEYMHNCK---TG--------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 218 ~e~l~~~~---~g--------~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
+..+.... .+ .......+.++++++.+..... . ...+|+||||++.+... + .++|+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~-----~---~~~KVvIIDEah~Lt~~-A----~NALL 139 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA-----Q---SRYRIFIVDEAHMVTTA-G----FNALL 139 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhh-----c---CCceEEEEECCCcCCHH-H----HHHHH
Confidence 11000000 00 0012246677777776643221 1 24579999999998643 3 33566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....++||+..+. ..+.+..|++ ||..+.|.+++..++.+.|.++|.++++.++++++..|+.
T Consensus 140 K~LEEpp~~~~fIL~tte-------~~kll~TI~S-----Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPEHLIFIFATTE-------PEKVLPTIRS-----RTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCCCeEEEEEeCC-------hHhhHHHHHH-----hceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 677765544555544322 1233333443 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhcC
Q 005987 367 ASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~ 385 (666)
.++||+|.|+|.|+.++..
T Consensus 208 ~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 208 AGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HcCCCHHHHHHHHHHHHhc
Confidence 9999999999999887654
No 20
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.91 E-value=1.4e-22 Score=215.44 Aligned_cols=289 Identities=17% Similarity=0.311 Sum_probs=187.8
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEEE
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEW 209 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~ 209 (666)
.+.+|+|||||++++|++||+..++.+..|++. +..+ +++|+||||+|||++++++++++. ..++++
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~------~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE------KNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhC------CCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 367899999999999999999999999999875 4443 589999999999999999999973 245566
Q ss_pred cCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH
Q 005987 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (666)
Q Consensus 210 nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~ 289 (666)
++++.. + ...+.+.+........ .+. ..+++|+|||++.+... . +..|..++
T Consensus 75 ~~~~~~-----------~------~~~~~~~i~~~~~~~~-----~~~-~~~~vviiDe~~~l~~~-~----~~~L~~~l 126 (319)
T PRK00440 75 NASDER-----------G------IDVIRNKIKEFARTAP-----VGG-APFKIIFLDEADNLTSD-A----QQALRRTM 126 (319)
T ss_pred cccccc-----------c------hHHHHHHHHHHHhcCC-----CCC-CCceEEEEeCcccCCHH-H----HHHHHHHH
Confidence 554311 1 1112222222211110 111 13569999999988543 1 22344444
Q ss_pred hcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 290 RSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 290 ~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
+... ...++++++.. .+.++.+++ ||..+.|.+++..++.++|..++.++++.+++++++.|+..+
T Consensus 127 e~~~~~~~lIl~~~~~--------~~l~~~l~s-----r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~ 193 (319)
T PRK00440 127 EMYSQNTRFILSCNYS--------SKIIDPIQS-----RCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVS 193 (319)
T ss_pred hcCCCCCeEEEEeCCc--------cccchhHHH-----HhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4322 22333333311 122333333 488899999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccc
Q 005987 369 GGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDA 448 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~ 448 (666)
+||+|.|++.||.++..+..... +.+..+..+....++|..+..++.++.. ..
T Consensus 194 ~gd~r~~~~~l~~~~~~~~~it~------------------~~v~~~~~~~~~~~i~~l~~~~~~~~~~-~a-------- 246 (319)
T PRK00440 194 EGDMRKAINALQAAAATGKEVTE------------------EAVYKITGTARPEEIREMIELALNGDFT-EA-------- 246 (319)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHhCCCCHHHHHHHHHHHHcCCHH-HH--------
Confidence 99999999999998764211100 0111233444455788877777643211 00
Q ss_pred hhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhccc
Q 005987 449 FVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 449 ~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
.. .-.+++...+.++..++..+++.... ...+.+...+++++++++|..+.
T Consensus 247 ---~~----------~l~~ll~~~g~~~~~i~~~l~~~~~~--~~~~~~~l~~~~~~~~~~d~~~k 297 (319)
T PRK00440 247 ---RE----------KLRDLMIDYGLSGEDIIKQIHREVWS--LDIPEELKVELIDAIGEADFRIT 297 (319)
T ss_pred ---HH----------HHHHHHHHcCCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 01123333455566666667764433 12336788899999999999876
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.91 E-value=8.5e-23 Score=218.95 Aligned_cols=303 Identities=21% Similarity=0.276 Sum_probs=190.0
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~n 210 (666)
..+|++||+|+++++++|++..++.|..++.. ++.+ ++||+|||||||||+|+++|+++. ..+++++
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~------~~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDS------PNLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhC------CCCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 46899999999999999999999999998875 4433 699999999999999999999984 3457777
Q ss_pred CCCchh-hhhhhhcccC-----C---ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHH
Q 005987 211 TPTPTI-WQEYMHNCKT-----G---LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (666)
Q Consensus 211 asd~~~-~~e~l~~~~~-----g---~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l 281 (666)
+++... ....+..... + ....+..+.++.++.....+... . ..+++|||||++.+... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~vlilDe~~~l~~~-~---- 141 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----S---ADYKTILLDNAEALRED-A---- 141 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----C---CCCcEEEEeCcccCCHH-H----
Confidence 664210 0001100000 0 00112234555555544433221 1 12459999999987532 2
Q ss_pred HHHHHHHHhcCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 005987 282 RQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (666)
Q Consensus 282 ~~~L~~l~~~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~ 360 (666)
++.|..+++.... ..+|++++ .. .+.+..|++ ||..+.|.|++.+++.++|.+++.++++.+++++
T Consensus 142 ~~~L~~~le~~~~~~~~Il~~~-~~-------~~~~~~L~s-----r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 208 (337)
T PRK12402 142 QQALRRIMEQYSRTCRFIIATR-QP-------SKLIPPIRS-----RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDG 208 (337)
T ss_pred HHHHHHHHHhccCCCeEEEEeC-Ch-------hhCchhhcC-----CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 2234444443222 23334433 11 122223332 5899999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCC-ccccchHHHHhHHhhCCCCCC
Q 005987 361 IDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGR-DETLSLFHALGKFLHNKRETD 439 (666)
Q Consensus 361 l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~R-D~~l~lFhalGkil~~Kr~~~ 439 (666)
++.|+..++||+|.+++.|+.++........ ..+..+..+ +...++|..+-.++..+. ..
T Consensus 209 l~~l~~~~~gdlr~l~~~l~~~~~~~~~It~------------------~~v~~~~~~~~~~~~i~~l~~ai~~~~~-~~ 269 (337)
T PRK12402 209 LELIAYYAGGDLRKAILTLQTAALAAGEITM------------------EAAYEALGDVGTDEVIESLLDAAEAGDF-TD 269 (337)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHhCCCCCHHHHHHHHHHHHcCCH-HH
Confidence 9999999999999999999998743221100 001112222 334577776666655421 11
Q ss_pred ccccccccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhccc
Q 005987 440 NLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 440 ~~~~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
. .. .-.+++...+.++..+...|.......|+ .+...+++++++++|..+.
T Consensus 270 a-----------~~----------~l~~l~~~~g~~~~~i~~~l~~~~~~~~~---~~~l~~~~~~l~~~d~~lk 320 (337)
T PRK12402 270 A-----------RK----------TLDDLLIDEGLSGGEVLEELLRVARSRYR---GDNLARLHRLAADADARLT 320 (337)
T ss_pred H-----------HH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHH
Confidence 0 00 01122233445555555555544333343 6778889999999999876
No 22
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=9.1e-23 Score=226.98 Aligned_cols=218 Identities=19% Similarity=0.243 Sum_probs=153.4
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC--
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP-- 212 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas-- 212 (666)
.-.+|++||||++|+|++||+..++.++..+.. ++.+ +.+||+|||||||||+|+++|+.+++....-..+
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~------~ri~-~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILN------DRLA-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 468999999999999999999999999988875 5655 7899999999999999999999997642110000
Q ss_pred CchhhhhhhhcccCC---------ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g---------~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
.++.....+.....+ .......+.++++++.+...+ . . .+.+|+||||++.+.. .+++
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P-~----~---~~~KVvIIDEa~~Ls~-~a~n---- 146 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP-L----Q---GKHKIFIIDEVHMLSK-GAFN---- 146 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc-c----c---CCcEEEEEEChhhcCH-HHHH----
Confidence 011110100000000 011234667888887764332 1 1 2467999999998854 2333
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 284 ~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
.|+.+++.....++||+..+. ..+....++ + ||..+.|.+++..++.++|.+++.++++.+++++++.
T Consensus 147 aLLk~LEepp~~~vfI~aTte-------~~kI~~tI~---S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~ 214 (507)
T PRK06645 147 ALLKTLEEPPPHIIFIFATTE-------VQKIPATII---S--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRI 214 (507)
T ss_pred HHHHHHhhcCCCEEEEEEeCC-------hHHhhHHHH---h--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 355555655444555544321 112222232 2 6999999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHhc
Q 005987 364 VAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 364 Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
|+..++||+|.|++.|+-++.
T Consensus 215 Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 215 IAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999987743
No 23
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=2.9e-23 Score=234.18 Aligned_cols=217 Identities=17% Similarity=0.276 Sum_probs=148.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTP 214 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~ 214 (666)
-+.|++||||++|+||+||+..++.|+.|+.. ++.+ +.+||+||+||||||+|+++|+.+++.-.. ......
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~------~rl~-Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDE------GRLH-HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 36799999999999999999999999999986 6665 789999999999999999999999764211 110000
Q ss_pred hhhhhhhhcc-cCC-c----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 215 TIWQEYMHNC-KTG-L----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~-~~g-~----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+..+..+... ... + ......+.++++++.+..... . .+.+||||||++.+... +++ .|+.+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~-----~---gk~KVIIIDEad~Ls~~-A~N----ALLKt 142 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT-----A---GKYKVYIIDEVHMLSKS-AFN----AMLKT 142 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhh-----h---CCcEEEEEECccccCHH-HHH----HHHHH
Confidence 0000000000 000 0 012234567777766532221 1 23579999999987642 333 35555
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....++||++... ..+.+..++ + ||..+.|.+++..++.++|.+++.++++.++++++..|++.+
T Consensus 143 LEEPp~~v~fILaTtd-------~~kL~~TIr---S--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPEHVKFILATTD-------PHKVPVTVL---S--RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHhCCCCcEEEEEeCC-------ccccchHHH---H--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 5543222223322211 112333333 3 599999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhc
Q 005987 369 GGDIRQAITSLQFSSL 384 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~ 384 (666)
+||+|.+++.|+.++.
T Consensus 211 ~GslRdAlnLLDqaia 226 (709)
T PRK08691 211 AGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999965443
No 24
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=7.2e-23 Score=229.09 Aligned_cols=214 Identities=21% Similarity=0.256 Sum_probs=149.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
..+|++||||++|+|++||+..++.+..+++. ++.+ +.+||+||+||||||+|+.+|+.+++.-- ...+++
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~------~rl~-ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~--~~~~pC 73 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALET------QKVH-HAYLFTGTRGVGKTTLGRLLAKCLNCKTG--VTAEPC 73 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCC--CCCCCC
Confidence 46799999999999999999999999999986 5555 67999999999999999999999875311 000011
Q ss_pred hhh---hhhhc-ccCC-----ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQ---EYMHN-CKTG-----LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~---e~l~~-~~~g-----~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+ ..+.+ .... .......+.++.+++.+..... . ...+|+||||++.++.. ..+.|+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~-----~---g~~kViIIDEa~~ls~~-----a~naLL 140 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS-----Q---GRYKVYLIDEVHMLSKQ-----SFNALL 140 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhh-----c---CCcEEEEEechhhccHH-----HHHHHH
Confidence 000 00000 0000 0011234566777776643221 1 24579999999988642 234566
Q ss_pred HHHhcCCCceEEE-EecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 287 LLVRSTHIPTAVV-LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 287 ~l~~~~~~PiViI-it~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
.+++.....++|| +++ . ..+.+..|+ + ||..+.|++++..++.+.|.+++.++++.+++++++.|+
T Consensus 141 K~LEepp~~v~fIL~Tt-d-------~~kil~tI~---S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia 207 (546)
T PRK14957 141 KTLEEPPEYVKFILATT-D-------YHKIPVTIL---S--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA 207 (546)
T ss_pred HHHhcCCCCceEEEEEC-C-------hhhhhhhHH---H--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6777654333333 332 1 122232333 3 599999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhc
Q 005987 366 QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~ 384 (666)
..++||+|.|+|.|+.++.
T Consensus 208 ~~s~GdlR~alnlLek~i~ 226 (546)
T PRK14957 208 YHAKGSLRDALSLLDQAIS 226 (546)
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 25
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=5.1e-23 Score=233.40 Aligned_cols=213 Identities=19% Similarity=0.301 Sum_probs=152.5
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-+.|.+||||++|+||+||+..++.|++.+.. ++.+ +.+||+||+||||||+|+++|+.+++.... ...++
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~------~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~--~~~pC 73 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDL------GRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGI--TATPC 73 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCC--CCCCC
Confidence 46799999999999999999999999998886 6666 678999999999999999999999875211 11111
Q ss_pred hhhhhhhcccCC---------ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g---------~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+..+.....| .......+.++++++.+.... . .++.+|+||||++.++.. ++ ++|+
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p-~-------~g~~KV~IIDEah~Ls~~-a~----NALL 140 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP-A-------RGRFKVYLIDEVHMLSRH-SF----NALL 140 (647)
T ss_pred CCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh-h-------cCCCEEEEEechHhCCHH-HH----HHHH
Confidence 111111000000 000234667888887764221 1 124679999999988643 23 4566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
+.++.....++||++.+.. .+.+..|++ ||..++|++++.+++..+|.++|..+++.++++++..|+.
T Consensus 141 KtLEEPp~~v~FIL~Tt~~-------~kLl~TI~S-----RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 141 KTLEEPPEHVKFLLATTDP-------QKLPVTILS-----RCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHHHcCCCCeEEEEecCCc-------cccchHHHh-----hheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6777654444444443221 123333333 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHH
Q 005987 367 ASGGDIRQAITSLQFS 382 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~ 382 (666)
.++||+|.|++.|+.+
T Consensus 209 ~s~Gs~R~Al~lldqa 224 (647)
T PRK07994 209 AADGSMRDALSLTDQA 224 (647)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 9999999999999543
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=1.1e-22 Score=220.25 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=148.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC-c
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT-P 214 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd-~ 214 (666)
-.+|++||||++++|++||++.++.++.++.. ++.+ +.+||+||||+||||+|+++|+++++....-..+. .
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~------~~~~-h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSL------GRIH-HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHc------CCCC-eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 35799999999999999999999999998875 5665 67899999999999999999999975321111110 0
Q ss_pred hh-hhhhhhccc-----CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 215 TI-WQEYMHNCK-----TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 215 ~~-~~e~l~~~~-----~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+. ..+...... .........+.++++++.+...+. ....+|+||||++.+... ++ +.|+..
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~--------~~~~kviIIDEa~~l~~~-a~----naLLk~ 142 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPS--------KSRFKVYLIDEVHMLSRH-SF----NALLKT 142 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcc--------cCCceEEEEEChhhcCHH-HH----HHHHHH
Confidence 00 000000000 000011345667777766532210 123579999999988542 22 345555
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....+.+|++... ..+.++.+++ ||..+.|.|++.+++.++|.+++..+++.+++++++.|+..+
T Consensus 143 lEe~~~~~~fIl~t~~-------~~~l~~tI~S-----Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s 210 (363)
T PRK14961 143 LEEPPQHIKFILATTD-------VEKIPKTILS-----RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA 210 (363)
T ss_pred HhcCCCCeEEEEEcCC-------hHhhhHHHHh-----hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6654433433333211 1122223332 599999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhc
Q 005987 369 GGDIRQAITSLQFSSL 384 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~ 384 (666)
+||+|.|++.|+.++.
T Consensus 211 ~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 211 HGSMRDALNLLEHAIN 226 (363)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987754
No 27
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=6.5e-23 Score=232.16 Aligned_cols=217 Identities=21% Similarity=0.332 Sum_probs=151.0
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEE-c--CC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW-D--TP 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~-n--as 212 (666)
-+.|++||||++|+|++||+..++.|++++.. ++.+ +.+||+||+||||||+|+++|+.+++.--.. . ..
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~------~rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQ------QRLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 46799999999999999999999999999986 5665 6889999999999999999999997632110 0 00
Q ss_pred CchhhhhhhhcccCCc---------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~---------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
.++..+..+.....|. ......+.++++++.+. |... .++.+|+||||+++++.. .++
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~-~~p~-------~g~~KV~IIDEvh~Ls~~-a~N---- 142 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV-YKPV-------QGRFKVFMIDEVHMLTNT-AFN---- 142 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH-hCcc-------cCCceEEEEEChhhCCHH-HHH----
Confidence 1111111111000000 01234567788887663 3211 124579999999998653 334
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 284 ~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
.|+..++.....++||+..+. ..+.+ ..+++ ||..+.|.+++..++.+.|.+++.++|+.++++++..
T Consensus 143 aLLKtLEEPP~~~~fIL~Ttd-------~~kil---~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 143 AMLKTLEEPPEYLKFVLATTD-------PQKVP---VTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred HHHHhcccCCCCeEEEEEECC-------chhhh---HHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 355556654433333333211 11222 33443 5999999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHHH-HHhc
Q 005987 364 VAQASGGDIRQAITSLQ-FSSL 384 (666)
Q Consensus 364 Ia~~s~GDIR~AIn~LQ-f~~~ 384 (666)
|+..++||+|.+++.|. .++.
T Consensus 211 La~~s~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 211 LARAARGSMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999985 4443
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=2.1e-22 Score=224.96 Aligned_cols=215 Identities=17% Similarity=0.212 Sum_probs=144.5
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcE----EEEcCCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL----YEWDTPT 213 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~v----iE~nasd 213 (666)
+| +||||++++||+||++.++.|+.++.. ++.+ +.+||+|||||||||+|+++|+.+.+.- ..+.+..
T Consensus 4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~------~~l~-ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 4 LY-QRARPITFDEVVGQEHVKEVLLAALRQ------GRLG-HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred HH-HhhCCCCHHHhcChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 44 999999999999999999999999986 5555 6789999999999999999999986420 0000000
Q ss_pred chhhhhhhhccc--CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhc
Q 005987 214 PTIWQEYMHNCK--TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS 291 (666)
Q Consensus 214 ~~~~~e~l~~~~--~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~ 291 (666)
.+......+... .+.......+.++++.+.+..... . ..++||||||++.+.. .+ .+.|+..++.
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~-----~---~~~kVVIIDEad~ls~-~a----~naLLk~LEe 142 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPL-----R---GGRKVYILDEAHMMSK-SA----FNALLKTLEE 142 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccc-----c---CCCeEEEEECccccCH-HH----HHHHHHHHHh
Confidence 000000000000 000012234556666555543221 1 2457999999998743 22 2345555555
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GD 371 (666)
....+++|+.... .......+++ ||..+.|.+++..++.+.|.+++.++|+.+++++++.|+..++||
T Consensus 143 p~~~t~~Il~t~~-------~~kl~~~I~S-----Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd 210 (504)
T PRK14963 143 PPEHVIFILATTE-------PEKMPPTILS-----RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA 210 (504)
T ss_pred CCCCEEEEEEcCC-------hhhCChHHhc-----ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4333344433211 1122222332 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 005987 372 IRQAITSLQFSSLK 385 (666)
Q Consensus 372 IR~AIn~LQf~~~~ 385 (666)
+|.|+|.||.++..
T Consensus 211 lR~aln~Lekl~~~ 224 (504)
T PRK14963 211 MRDAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 29
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=1.5e-22 Score=226.51 Aligned_cols=215 Identities=14% Similarity=0.221 Sum_probs=152.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
...|++||||++|+|++||+..++.+.+++.. ++.+ +.+||+||+|+||||+|+++|+.+.+.- |...+++
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------~rl~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~--~~~~~~C 73 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILN------NKLT-HAYIFSGPRGIGKTSIAKIFAKAINCLN--PKDGDCC 73 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCC--CCCCCCC
Confidence 36899999999999999999999999999875 5555 7899999999999999999999986422 1111111
Q ss_pred hhhhh---hhc----c---cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHH
Q 005987 216 IWQEY---MHN----C---KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (666)
Q Consensus 216 ~~~e~---l~~----~---~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L 285 (666)
..+.. +.. . ..+.. ....+.++.+++.+...+. .+ ..+|++|||++.+... + .++|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas-~igVd~IReIi~~~~~~P~-----~~---~~KVIIIDEad~Lt~~-A----~NaL 139 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS-NNGVDEIRNIIDNINYLPT-----TF---KYKVYIIDEAHMLSTS-A----WNAL 139 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc-ccCHHHHHHHHHHHHhchh-----hC---CcEEEEEechHhCCHH-H----HHHH
Confidence 11110 000 0 00100 1345567777766643321 11 3569999999988643 2 3456
Q ss_pred HHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 286 ~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
+.+++.....+++|+.... ..+.+..++ + ||..+.|.+++..++..+|..++.++++.+++++++.|+
T Consensus 140 LKtLEEPp~~tvfIL~Tt~-------~~KLl~TI~---S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 140 LKTLEEPPKHVVFIFATTE-------FQKIPLTII---S--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHhCCCcEEEEEECCC-------hHhhhHHHH---h--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6777765433444433311 122222333 2 599999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhcC
Q 005987 366 QASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~~ 385 (666)
..++||+|.|++.|+.++..
T Consensus 208 ~lS~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 208 DLADGSLRDGLSILDQLSTF 227 (605)
T ss_pred HHcCCcHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 30
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.90 E-value=6.9e-22 Score=210.36 Aligned_cols=279 Identities=14% Similarity=0.201 Sum_probs=180.2
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
...+|++||||++++|+++|+..++.++.|++. ++.+ +.+||+||||+|||++++++|++++..++++++.+.
T Consensus 7 ~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~------~~~~-~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~ 79 (316)
T PHA02544 7 NEFMWEQKYRPSTIDECILPAADKETFKSIVKK------GRIP-NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC 79 (316)
T ss_pred CCCcceeccCCCcHHHhcCcHHHHHHHHHHHhc------CCCC-eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc
Confidence 367899999999999999999999999999985 5555 678889999999999999999999999999987641
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC--
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-- 292 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~-- 292 (666)
. .+.+++.+......... . ..+++|||||++.+..... ++.|..+++..
T Consensus 80 ~------------------~~~i~~~l~~~~~~~~~----~---~~~~vliiDe~d~l~~~~~----~~~L~~~le~~~~ 130 (316)
T PHA02544 80 R------------------IDFVRNRLTRFASTVSL----T---GGGKVIIIDEFDRLGLADA----QRHLRSFMEAYSK 130 (316)
T ss_pred c------------------HHHHHHHHHHHHHhhcc----c---CCCeEEEEECcccccCHHH----HHHHHHHHHhcCC
Confidence 0 11122212111111100 1 1356999999998744332 23344444442
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHH-------HHHHHHHhCCCCCHHHHHHHH
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRT-------LSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~ki-------L~~I~~~e~i~v~~~~l~~Ia 365 (666)
..++| ++++. ..+..+.|++ ||..+.|++|+..+...+ +..++..+++.++++++..++
T Consensus 131 ~~~~I-lt~n~--------~~~l~~~l~s-----R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~ 196 (316)
T PHA02544 131 NCSFI-ITANN--------KNGIIEPLRS-----RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALV 196 (316)
T ss_pred CceEE-EEcCC--------hhhchHHHHh-----hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 23333 33321 1123333333 588999999998876644 445566789999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCcccccc
Q 005987 366 QASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMD 445 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~ 445 (666)
..+.||+|.+++.|+.++.... ... ..+..+. ...+|+.+..+ ..+ .. .
T Consensus 197 ~~~~~d~r~~l~~l~~~~~~~~-i~~------------------~~l~~~~----~~~~~~l~~~l-~~~-d~-~----- 245 (316)
T PHA02544 197 KKNFPDFRRTINELQRYASTGK-IDA------------------GILSEVT----NSDIDDVVEAL-KAK-DF-K----- 245 (316)
T ss_pred HhcCCCHHHHHHHHHHHHccCC-CCH------------------HHHHHhh----HHHHHHHHHHH-HcC-CH-H-----
Confidence 9999999999999998774321 000 0000111 22344444332 221 00 0
Q ss_pred ccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhcccc
Q 005987 446 QDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLAS 515 (666)
Q Consensus 446 ~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~~ 515 (666)
.+. .+....+.+++.++..++++...-+. ......+++.++.+|..+..
T Consensus 246 ----~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 294 (316)
T PHA02544 246 ----AVR--------------ALAPNYANDYASFVGKLYDELYPQVT---PPSIIRLIEIIGENNQYHGF 294 (316)
T ss_pred ----HHH--------------HHHHHhccCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHh
Confidence 000 12233455677888888888876553 56777889999999988763
No 31
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=2e-22 Score=235.41 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=154.3
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
..|.+||||++|+||+||+..++.|+.++.. ++.+ +.+||+||+||||||+|++||+.|++.- ......+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~------~ri~-Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~--~~~~~pCg 73 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDS------GRIN-HAYLFSGPRGCGKTSSARILARSLNCVE--GPTSTPCG 73 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh------CCCC-ceEEEECCCCCCHHHHHHHHHHHhCccc--CCCCCCCc
Confidence 4588999999999999999999999999986 6666 6799999999999999999999998641 11111111
Q ss_pred hhhhhhcccCC----c-------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHH
Q 005987 217 WQEYMHNCKTG----L-------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (666)
Q Consensus 217 ~~e~l~~~~~g----~-------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L 285 (666)
.+..+.....| . .....+++++++.+++. +... ..+.+|+||||++.+... ..+.|
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~-~~p~-------~~~~KV~IIDEad~lt~~-----a~NaL 140 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAF-FAPA-------ESRYKIFIIDEAHMVTPQ-----GFNAL 140 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHH-hchh-------cCCceEEEEechhhcCHH-----HHHHH
Confidence 11111000000 0 00124567777666553 2211 124679999999998642 23457
Q ss_pred HHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 286 ~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
+++++.....++||+..+. ..+.+..|++ ||.+|.|.+++..+|.++|.++|.++++.++++++..|+
T Consensus 141 LK~LEEpP~~~~fIl~tt~-------~~kLl~TIrS-----Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 141 LKIVEEPPEHLKFIFATTE-------PDKVIGTIRS-----RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred HHHHhCCCCCeEEEEEeCC-------hhhhhHHHHh-----heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777776555555544321 1233334444 599999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhcC
Q 005987 366 QASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~~ 385 (666)
..++||+|.+++.|+-++..
T Consensus 209 ~~sgGdlR~Al~eLEKLia~ 228 (824)
T PRK07764 209 RAGGGSVRDSLSVLDQLLAG 228 (824)
T ss_pred HHcCCCHHHHHHHHHHHHhh
Confidence 99999999999999877643
No 32
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=3.6e-22 Score=222.36 Aligned_cols=199 Identities=22% Similarity=0.360 Sum_probs=147.6
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc-----------
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----------- 205 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~----------- 205 (666)
+.|++||||++++|++||+..++.++.++.. |+.+ +.+|||||+|+||||+|+++|+.+.+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~------grl~-hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDN------NRLA-HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4699999999999999999999999999986 6666 788999999999999999999998432
Q ss_pred -------------EEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCC
Q 005987 206 -------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVT 272 (666)
Q Consensus 206 -------------viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l 272 (666)
++++++.+ ....+.++++++.+...+. . ...+|+||||++++
T Consensus 75 ~~C~~~~~~~h~dv~eldaas-----------------~~gId~IRelie~~~~~P~-----~---~~~KVvIIDEad~L 129 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS-----------------NRGIDDIRELIEQTKYKPS-----M---ARFKIFIIDEVHML 129 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc-----------------ccCHHHHHHHHHHHhhCcc-----c---CCeEEEEEECcccC
Confidence 22222111 1235667777765432111 1 24579999999998
Q ss_pred cchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh
Q 005987 273 NGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE 352 (666)
Q Consensus 273 ~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e 352 (666)
... +++ +|+.+++.....++||+.... ..+.+..|++ ||..++|.+++..++.++|.++|.++
T Consensus 130 t~~-A~N----ALLK~LEEpp~~t~FIL~ttd-------~~kL~~tI~S-----Rc~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 130 TKE-AFN----ALLKTLEEPPSYVKFILATTD-------PLKLPATILS-----RTQHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred CHH-HHH----HHHHHHhhcCCceEEEEEECC-------hhhCchHHHh-----hceeEEcCCCCHHHHHHHHHHHHHHc
Confidence 642 333 455666654333333333211 1233333443 59999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 353 QYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 353 ~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
|+.++++++..|+..++||+|.|++.|+-++.
T Consensus 193 Gi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~ 224 (535)
T PRK08451 193 GVSYEPEALEILARSGNGSLRDTLTLLDQAII 224 (535)
T ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999976553
No 33
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=3.7e-22 Score=224.53 Aligned_cols=214 Identities=17% Similarity=0.258 Sum_probs=146.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
..+|++||||++|+||+||+..++.|.++++. ++.+ +.+||+||+||||||+|+++|+.+.+.--. ...++
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~------~ri~-ha~Lf~GPpG~GKTtiArilAk~L~C~~~~--~~~pC 73 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQE------NRVA-PAYLFSGTRGVGKTTIARIFAKALNCETAP--TGEPC 73 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHhccccCCC--CCCCC
Confidence 46899999999999999999999999999886 5555 689999999999999999999999763110 00011
Q ss_pred hhhhhhhcccCCc---------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g~---------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..++.+.....|. .....++.++.+.+.+.... . ....+||||||++.+... . .+.|+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p-~-------~g~~kVIIIDEad~Lt~~-a----~naLL 140 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP-M-------EGRYKVFIIDEAHMLTRE-A----FNALL 140 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhh-h-------cCCceEEEEEChHhCCHH-H----HHHHH
Confidence 0000000000000 00123455666555543221 1 123579999999988632 2 33455
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....+++|+.... ..+.+..|+ + ||..|.|++++.+++.++|..++..+++.+++++++.|+.
T Consensus 141 k~LEEP~~~~ifILaTt~-------~~kll~TI~---S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 141 KTLEEPPARVTFVLATTE-------PHKFPVTIV---S--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHhhccCCCEEEEEecCC-------hhhhhHHHH---h--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666654333333333211 112222233 2 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHh
Q 005987 367 ASGGDIRQAITSLQFSS 383 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~ 383 (666)
.++||+|.|++.|+.++
T Consensus 209 ~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 209 RAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 99999999999997544
No 34
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=3.3e-22 Score=225.28 Aligned_cols=217 Identities=19% Similarity=0.251 Sum_probs=151.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTP 214 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~ 214 (666)
-+.|++||||++|+||+||+..++.+..++.. ++.+ +.+||+||||+||||+|+++|+.++++... ......
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~------~~~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQ------QRLH-HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHc------CCCC-EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 35699999999999999999999999999986 5555 678999999999999999999999764211 011111
Q ss_pred hhhhhhhhcc-c-----CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 215 TIWQEYMHNC-K-----TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~-~-----~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+.....+.+. . .........+.++++++.+...+ . ..+.+|+||||++++... ++ +.|+..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p-~-------~~~~kVvIIDEad~ls~~-a~----naLLK~ 142 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP-T-------RGRFKVYIIDEVHMLSKS-AF----NAMLKT 142 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc-c-------cCCceEEEEcCcccCCHH-HH----HHHHHH
Confidence 1111100000 0 00001234567777777664221 1 124679999999988643 23 346666
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....++||+..+. ..+.+..++ + ||..+.|.+++..++.+.|.+++.+|++.++++++..|+..+
T Consensus 143 LEepp~~~~fIL~t~d-------~~kil~tI~---S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 143 LEEPPEHVKFILATTD-------PQKIPVTVL---S--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HhCCCCCEEEEEEeCC-------hhhCchhHH---H--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6665433434333221 112232333 3 499999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhc
Q 005987 369 GGDIRQAITSLQFSSL 384 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~ 384 (666)
+||+|.|++.|+.++.
T Consensus 211 ~Gslr~al~lldqai~ 226 (527)
T PRK14969 211 AGSMRDALSLLDQAIA 226 (527)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999965543
No 35
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=8.5e-22 Score=224.48 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=154.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-..|++||||++++||+||+..++.|+.++.. ++.+ +.+||+||+|+|||++|+++|+.+.+.-.. ....++
T Consensus 5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~------~rl~-HAYLF~GP~GtGKTt~AriLAk~LnC~~~~-~~~~pC 76 (725)
T PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKS------NKIS-HAYLFSGPRGTGKTSVAKIFANALNCSHKT-DLLEPC 76 (725)
T ss_pred hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCcHHHHHHHHHHHhcccccC-CCCCch
Confidence 57899999999999999999999999999986 6666 789999999999999999999999764210 001111
Q ss_pred hhhhhhhccc------CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH
Q 005987 216 IWQEYMHNCK------TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (666)
Q Consensus 216 ~~~e~l~~~~------~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~ 289 (666)
..+....... .+. .....+.++++++.+...+. ....+|+||||++.+... + .++|+..+
T Consensus 77 ~~C~~~~~~~~Dvieidaa-sn~~vd~IReLie~~~~~P~--------~g~~KV~IIDEa~~LT~~-A----~NALLKtL 142 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAA-SNNGVDEIRELIENVKNLPT--------QSKYKIYIIDEVHMLSKS-A----FNALLKTL 142 (725)
T ss_pred hHHHHhhcCCCcEEEEecc-ccCCHHHHHHHHHHHHhchh--------cCCCEEEEEEChhhCCHH-H----HHHHHHHh
Confidence 1111100000 000 01235667777777653321 124579999999988643 2 34566667
Q ss_pred hcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 290 ~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
+.....+++|+.... ..+.+. .+++ ||..+.|.+++..++.++|..++.++|+.++++++..|+..++
T Consensus 143 EEPP~~tifILaTte-------~~KLl~---TI~S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~ 210 (725)
T PRK07133 143 EEPPKHVIFILATTE-------VHKIPL---TILS--RVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS 210 (725)
T ss_pred hcCCCceEEEEEcCC-------hhhhhH---HHHh--hceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 766545555544321 112222 3333 5999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhc
Q 005987 370 GDIRQAITSLQFSSL 384 (666)
Q Consensus 370 GDIR~AIn~LQf~~~ 384 (666)
||+|.|++.|+-++.
T Consensus 211 GslR~AlslLekl~~ 225 (725)
T PRK07133 211 GSLRDALSIAEQVSI 225 (725)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 36
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=7.4e-22 Score=223.86 Aligned_cols=214 Identities=19% Similarity=0.284 Sum_probs=152.3
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
+.|++||||++|+||+||+..++.+++++.. ++.+ +.+||+||+|||||++|+.+|+.+++.-- ....++.
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~------~~~~-hayLf~Gp~GtGKTt~Ak~lAkal~c~~~--~~~~pC~ 74 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQ------GKIS-HAYLFSGPRGTGKTSAAKIFAKAVNCLNP--PDGEPCN 74 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCC--CCCCCCC
Confidence 5688999999999999999999999999986 5555 78999999999999999999999865311 0011111
Q ss_pred hhhhhhcccCCc---------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHH
Q 005987 217 WQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (666)
Q Consensus 217 ~~e~l~~~~~g~---------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~ 287 (666)
.+..+.....|. ......+.++++++.+...+. ..+.+|+||||++.+... +++ +|+.
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~--------~~~~kViIIDE~~~Lt~~-a~n----aLLK 141 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS--------EAKYKVYIIDEVHMLSTG-AFN----ALLK 141 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc--------cCCeEEEEEECcccCCHH-HHH----HHHH
Confidence 111111000110 012345677778777643221 124679999999988542 333 4556
Q ss_pred HHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 288 l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
.++.....++||++.+.. .+.+..|++ ||..+.|.+++..++.++|..++.++|+.++++++..|+..
T Consensus 142 tLEepp~~~ifIlatt~~-------~ki~~tI~S-----Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 142 TLEEPPAHVIFILATTEP-------HKIPATILS-----RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HhcCCCCCeEEEEEeCCh-------hhCcHHHHh-----HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666654445555554221 223333333 59999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhc
Q 005987 368 SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~ 384 (666)
++||+|.|++.|+.+..
T Consensus 210 s~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 210 AEGGMRDALSILDQAIS 226 (559)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999976543
No 37
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=7.8e-22 Score=223.82 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=155.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc-CC--
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD-TP-- 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n-as-- 212 (666)
-..|.+||||++|+||+||+..++.|.+++.. |+.+ +.+||+||+|+||||+|+++|+.+++.....+ .+
T Consensus 11 y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~------gri~-ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFET------GRIA-QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred chhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 57899999999999999999999999999986 6766 78999999999999999999999987543222 11
Q ss_pred CchhhhhhhhcccCCcc---------ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLE---------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~---------~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
+.+..++.+.....|.. -....++++++++.+..... . ...+|+||||++.++.. +++
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~-----~---a~~KVvIIDEad~Ls~~-a~n---- 150 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV-----S---ARYKVYIIDEVHMLSTA-AFN---- 150 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh-----c---CCcEEEEEEChHhCCHH-HHH----
Confidence 12222222211111110 12346678888877643321 1 24579999999988643 333
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 284 ~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
.|+.+++.....++||+.... ..+.+..|++ ||..|.|.+++..++.+.|.+++.++++.+++++++.
T Consensus 151 aLLKtLEePp~~~~fIl~tte-------~~kll~tI~S-----Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTE-------IRKVPVTVLS-----RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCC-------hhhhhHHHHh-----heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 455555654333333332211 1223333333 5999999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHhc
Q 005987 364 VAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 364 Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
|+..++||+|.+++.|+-++.
T Consensus 219 Ia~~a~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 219 IARAAEGSVRDGLSLLDQAIA 239 (598)
T ss_pred HHHHcCCCHHHHHHHHHHHHh
Confidence 999999999999999965543
No 38
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.88 E-value=1.6e-21 Score=193.93 Aligned_cols=220 Identities=18% Similarity=0.316 Sum_probs=157.8
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-CC-------cEEE
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-GA-------RLYE 208 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g~-------~viE 208 (666)
.+|++||+|++++.+.+|++.-.+++..... +..| ++++|||+|.||-|.+.+|.+++ |. +..+
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~------~d~P--Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSST------GDFP--HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhccc------CCCC--eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 3799999999999999999888888776543 5555 89999999999999999999998 21 2222
Q ss_pred EcCCCchhh-------hhhhh--cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHH
Q 005987 209 WDTPTPTIW-------QEYMH--NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE 279 (666)
Q Consensus 209 ~nasd~~~~-------~e~l~--~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~ 279 (666)
|..+...-. ..|+. ....|... .--+++++.++.+...+- +...+.-+|++|-|+|.+.. ++..
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~D---RvViQellKevAQt~qie---~~~qr~fKvvvi~ead~LT~-dAQ~ 145 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYD---RVVIQELLKEVAQTQQIE---TQGQRPFKVVVINEADELTR-DAQH 145 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCccc---HHHHHHHHHHHHhhcchh---hccccceEEEEEechHhhhH-HHHH
Confidence 322221100 00110 01112110 112455565554433221 22234567999999998743 3445
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH
Q 005987 280 RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (666)
Q Consensus 280 ~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~ 359 (666)
.++..++.+....+ +|++|+. .++.++++++ ||..|+.+.|+++++..+|.++|++|++.++.+
T Consensus 146 aLRRTMEkYs~~~R--lIl~cns---------~SriIepIrS-----RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 146 ALRRTMEKYSSNCR--LILVCNS---------TSRIIEPIRS-----RCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred HHHHHHHHHhcCce--EEEEecC---------cccchhHHhh-----heeEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 67777888876664 4544443 4578888887 699999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 005987 360 QIDLVAQASGGDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 360 ~l~~Ia~~s~GDIR~AIn~LQf~~~~~~ 387 (666)
.+..||+.|+||+|.||-+|+..+....
T Consensus 210 ~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 210 LLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998644
No 39
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.7e-21 Score=217.03 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=148.4
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
-.+|++||||++|+|++||+..++.++.++.. ++.+ +.+|||||+|+||||+|+.+|+.+++.-- ...+++
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~------~~i~-hayLf~Gp~G~GKTtlAr~lAk~L~c~~~--~~~~pc 73 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKL------QRVS-HAYIFAGPRGTGKTTIARILAKVLNCLNP--QEGEPC 73 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCcCC--CCCCCC
Confidence 45899999999999999999999999999986 5555 67899999999999999999999975310 000111
Q ss_pred hhhhhhhcccCC----c-----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTG----L-----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g----~-----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..+..+.....| + ......+.++.+.+.+...+. . ..++|+||||++.+... ++ ++|+
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~-----~---~~~KVvIIDEad~Lt~~-a~----naLL 140 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI-----K---GKYKVYIIDEAHMLTKE-AF----NALL 140 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc-----c---CCeeEEEEEChhhcCHH-HH----HHHH
Confidence 111100000000 0 011234556666665543221 1 24579999999987532 23 3455
Q ss_pred HHHhcCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 287 LLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 287 ~l~~~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
.+++.... .++|++++ . ....+. .+.+ ||..+.|++++..++.++|.+++..+|+.+++++++.|+
T Consensus 141 k~LEepp~~~v~Il~tt-~-------~~kl~~---tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 141 KTLEEPPPRTIFILCTT-E-------YDKIPP---TILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred HHHhcCCCCeEEEEEEC-C-------HHHHHH---HHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55665432 34444442 1 112222 2222 599999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhc
Q 005987 366 QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~ 384 (666)
..++||+|.|++.|+.++.
T Consensus 208 ~~s~G~lr~al~~Ldkl~~ 226 (486)
T PRK14953 208 QASEGGMRDAASLLDQAST 226 (486)
T ss_pred HHcCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 40
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.4e-21 Score=222.66 Aligned_cols=214 Identities=20% Similarity=0.289 Sum_probs=149.8
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEE-EEcCCCch
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY-EWDTPTPT 215 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~vi-E~nasd~~ 215 (666)
+.|++||||++|+||+||++.++.|.++++. ++.+ +.+|||||+|+||||+|+++|+.+++.-- .......+
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~------~~~~-hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDT------GRVA-HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 5689999999999999999999999999986 6666 78899999999999999999999975310 00000000
Q ss_pred hhhhhhhcc-------cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 216 IWQEYMHNC-------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 216 ~~~e~l~~~-------~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
..+..+... ..|.. ....+.++++++.+...+. . .+.+|+||||+++++.. ++ ++|+.+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s-~~~v~~ir~l~~~~~~~p~-----~---~~~KVvIIdev~~Lt~~-a~----naLLk~ 142 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS-NTGVDDIRELRENVKYLPS-----R---SRYKIFIIDEVHMLSTN-AF----NALLKT 142 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC-ccCHHHHHHHHHHHHhccc-----c---CCceEEEEEChhhCCHH-HH----HHHHHH
Confidence 000000000 00100 2345677777777643221 1 24579999999988643 33 356666
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....++||+..+. ..+.+..|++ ||..+.|++++..++.+.|..++.++++.++++++..|+..+
T Consensus 143 LEepp~~~~fIl~t~~-------~~kl~~tI~S-----Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPPHVKFIFATTE-------PHKVPITILS-----RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCCCeEEEEEeCC-------hhhhhHHHHH-----hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 6665433444433221 1223333333 599999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHh
Q 005987 369 GGDIRQAITSLQFSS 383 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~ 383 (666)
+||+|.|++.|+-+.
T Consensus 211 ~G~lr~al~~Ldqli 225 (576)
T PRK14965 211 DGSMRDSLSTLDQVL 225 (576)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999996554
No 41
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.88 E-value=4.4e-21 Score=207.37 Aligned_cols=216 Identities=18% Similarity=0.286 Sum_probs=147.8
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEE-EEcCCCch
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY-EWDTPTPT 215 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~vi-E~nasd~~ 215 (666)
++|++||+|+++++++||++.++.+..++.. |+.+ +.+||+||||+|||++++++|+.+.+.-. ...+...+
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~------~~~~-~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKN------GRIA-HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 5899999999999999999999999999986 6655 68999999999999999999999865410 00000000
Q ss_pred hhhhhhhc-cc------CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 216 IWQEYMHN-CK------TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 216 ~~~e~l~~-~~------~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
.....+.. .. .+.. ....+.++++++.+...+. . ..++|++|||++.+... + .+.|+..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~p~-----~---~~~~vviidea~~l~~~-~----~~~Ll~~ 140 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS-NNGVDDIREILDNVKYAPS-----S---GKYKVYIIDEVHMLSKS-A----FNALLKT 140 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc-cCCHHHHHHHHHHHhcCcc-----c---CCceEEEEeChhhcCHH-H----HHHHHHH
Confidence 00000000 00 0000 1234456777776643221 1 23569999999987542 2 2335555
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....+++|++..+ ..+.+..+++ ||..+.|.+++..++.++|..++..+++.+++++++.|+..+
T Consensus 141 le~~~~~~~lIl~~~~-------~~~l~~~l~s-----r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~ 208 (355)
T TIGR02397 141 LEEPPEHVVFILATTE-------PHKIPATILS-----RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA 208 (355)
T ss_pred HhCCccceeEEEEeCC-------HHHHHHHHHh-----heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5554333444433211 1122222332 589999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcC
Q 005987 369 GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~~ 385 (666)
+||+|.|++.|+.++..
T Consensus 209 ~g~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 209 DGSLRDALSLLDQLISF 225 (355)
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999999887653
No 42
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=6.4e-21 Score=207.19 Aligned_cols=212 Identities=18% Similarity=0.305 Sum_probs=147.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
...|.+||||++++|++||+..++.+..+++. |..+ +.+|||||||+|||++++++|+.++.....-...+ .
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~------~~~~-~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~-~ 75 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIEN------NHLA-QALLFCGPRGVGKTTCARILARKINQPGYDDPNED-F 75 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-C
Confidence 46799999999999999999999999999986 5555 68999999999999999999999854211100000 0
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCc
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP 295 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~P 295 (666)
.+ . +... .+. .....+.+.+.++.+...+. . ..++||+|||++.+... . .+.|..+++.....
T Consensus 76 ~~-~-~~~l-~~~-~~~~~~~i~~l~~~~~~~p~-----~---~~~kiviIDE~~~l~~~-~----~~~ll~~le~~~~~ 138 (367)
T PRK14970 76 SF-N-IFEL-DAA-SNNSVDDIRNLIDQVRIPPQ-----T---GKYKIYIIDEVHMLSSA-A----FNAFLKTLEEPPAH 138 (367)
T ss_pred Cc-c-eEEe-ccc-cCCCHHHHHHHHHHHhhccc-----c---CCcEEEEEeChhhcCHH-H----HHHHHHHHhCCCCc
Confidence 00 0 0000 000 01223566666666532221 1 13569999999987542 2 23455555554333
Q ss_pred eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Q 005987 296 TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQA 375 (666)
Q Consensus 296 iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~A 375 (666)
.++|++... ..+.++.+++ ||..+.|.+++..++..+|..++.++++.+++++++.|+..++||+|.+
T Consensus 139 ~~~Il~~~~-------~~kl~~~l~s-----r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 139 AIFILATTE-------KHKIIPTILS-----RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred eEEEEEeCC-------cccCCHHHHh-----cceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 333333211 1233333433 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 005987 376 ITSLQFSSL 384 (666)
Q Consensus 376 In~LQf~~~ 384 (666)
++.|+.++.
T Consensus 207 ~~~lekl~~ 215 (367)
T PRK14970 207 LSIFDRVVT 215 (367)
T ss_pred HHHHHHHHH
Confidence 999999875
No 43
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=8.4e-21 Score=216.79 Aligned_cols=218 Identities=22% Similarity=0.286 Sum_probs=155.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
..+|.+||||++|++++||+..++.|..++.. ++.. +.+||+||+|+||||+|+++|+.+++....-....++
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~------~rl~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALIS------NRIA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHc------CCCC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 46899999999999999999999999999986 5554 6899999999999999999999997742211000111
Q ss_pred hhhhhhhcccCCc---------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g~---------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
..++.+.....|. ......+.++++++.+..... . ...+||||||++.+... ..+.|+
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~-----~---~~~KViIIDEad~Lt~~-----a~naLL 142 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV-----Q---ARWKVYVIDECHMLSTA-----AFNALL 142 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh-----c---CCceEEEEECccccCHH-----HHHHHH
Confidence 1111110000010 012345678888877642221 1 23579999999988642 234566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....++||+.... ..+.+..|++ ||..+.|.+++..++.++|..++.++++.++++++..|++
T Consensus 143 K~LEePp~~tvfIL~t~~-------~~~llpTIrS-----Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 143 KTLEEPPPRVVFVLATTD-------PQRVLPTIIS-----RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHhcCCcCeEEEEEeCC-------hhhhhHHHHh-----heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 677765444555543321 1233333433 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhcC
Q 005987 367 ASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~ 385 (666)
.++||+|.|++.|+..++.
T Consensus 211 ~s~G~lr~A~~lLeklsL~ 229 (620)
T PRK14948 211 RSQGGLRDAESLLDQLSLL 229 (620)
T ss_pred HcCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 44
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=6.2e-21 Score=211.29 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=149.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC--CC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT--PT 213 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na--sd 213 (666)
.+.|.+||||++++|++||+..++.++.+++. ++.+ +.+||+||||+|||++|+++|+.+.+.-..-+. ..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~------~~i~-ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRF------NRAA-HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCc-eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 46799999999999999999999999999986 6665 789999999999999999999998653110000 00
Q ss_pred chhhhhhhhcc-------cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 214 PTIWQEYMHNC-------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 214 ~~~~~e~l~~~-------~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
.+..+..+... ..|.. ....+.++.+.+.+.... . ...++||||||++.+... ..+.|+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~-~~gid~ir~i~~~l~~~~-~-------~~~~kvvIIdead~lt~~-----~~n~LL 142 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGAS-HRGIEDIRQINETVLFTP-S-------KSRYKIYIIDEVHMLTKE-----AFNSLL 142 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccc-cCCHHHHHHHHHHHHhhh-h-------cCCCEEEEEecHHhhCHH-----HHHHHH
Confidence 00000000000 01111 112455555554443211 1 124579999999987542 234566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....+++|+.... ..+.+..|++ ||..+.|++++..++.+.|..++.++++.+++++++.|+.
T Consensus 143 k~lEep~~~~~~Il~t~~-------~~kl~~tI~s-----Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 143 KTLEEPPQHVKFFLATTE-------IHKIPGTILS-----RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHhhcCCCCceEEEEeCC-------hHhcchHHHH-----hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 677765434444433211 1233334443 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhc
Q 005987 367 ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~ 384 (666)
.++||+|.|++.|+..+.
T Consensus 211 ~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 211 AAQGSLRDAESLYDYVVG 228 (451)
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=2.4e-21 Score=190.95 Aligned_cols=200 Identities=21% Similarity=0.293 Sum_probs=129.9
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
...++.++.||++++|++||++.+..++-+++...... ..+ .++|||||||+||||+|+.+|++++..+...+++..
T Consensus 10 ~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-~~l--~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 10 EEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-EAL--DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp --S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-S-----EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred cchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-CCc--ceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 46789999999999999999999999999988764321 222 489999999999999999999999999988887541
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI 294 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~ 294 (666)
....++..++... +.+.||||||++.++. ..+++|+..++....
T Consensus 87 -----------------~k~~dl~~il~~l--------------~~~~ILFIDEIHRlnk-----~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 87 -----------------EKAGDLAAILTNL--------------KEGDILFIDEIHRLNK-----AQQEILLPAMEDGKI 130 (233)
T ss_dssp ------------------SCHHHHHHHHT----------------TT-EEEECTCCC--H-----HHHHHHHHHHHCSEE
T ss_pred -----------------hhHHHHHHHHHhc--------------CCCcEEEEechhhccH-----HHHHHHHHHhccCeE
Confidence 1122333344322 1346999999998853 245678888886531
Q ss_pred -----------------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 295 -----------------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 295 -----------------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
|-+-++++++... .|.+-|+.+.....+++.++.+++.+++.+-+...++.++
T Consensus 131 diiiG~g~~ar~~~~~l~~FTligATTr~g----------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~ 200 (233)
T PF05496_consen 131 DIIIGKGPNARSIRINLPPFTLIGATTRAG----------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID 200 (233)
T ss_dssp EEEBSSSSS-BEEEEE----EEEEEESSGC----------CTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-
T ss_pred EEEeccccccceeeccCCCceEeeeecccc----------ccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC
Confidence 1122222222111 1222222212334589999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005987 358 TEQIDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 358 ~~~l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
+++..+||..|.|+.|-|.+.|...-
T Consensus 201 ~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 201 EDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999999999999999998753
No 46
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=7.8e-21 Score=217.09 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=152.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE--EcCCC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE--WDTPT 213 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE--~nasd 213 (666)
-..|++||||++|+||+||+..++.|..+++. ++.+ +.+|||||+|+||||+|+++|+.+.+.... ..+..
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~------~~l~-hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIAT------NKLA-HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 35799999999999999999999999999986 6666 789999999999999999999999754210 00000
Q ss_pred chhhhhhhhcc-------cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 214 PTIWQEYMHNC-------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 214 ~~~~~e~l~~~-------~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
.+..+..+... ..+.. ....+.++++++.+...+. .+ ..+|+||||++.+... ..+.|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~-~~~vd~Ir~li~~~~~~P~-----~~---~~KVvIIdea~~Ls~~-----a~naLL 142 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS-NNSVDDIRNLIEQVRIPPQ-----IG---KYKIYIIDEVHMLSQA-----AFNAFL 142 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc-cCCHHHHHHHHHHHhhCcc-----cC---CcEEEEEECcccCCHH-----HHHHHH
Confidence 00000000000 00110 1235677777776643331 11 3579999999998642 234566
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....++||+..+. ..+.+..|++ ||..+.|.+++..++.+.|.+++.++|+.+++++++.|+.
T Consensus 143 K~LEepp~~tifIL~tt~-------~~kIl~tI~S-----Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 143 KTLEEPPSYAIFILATTE-------KHKILPTILS-----RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHhCCCCCeEEEEEeCC-------chhchHHHHh-----hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 677765433444433321 1234444443 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHh
Q 005987 367 ASGGDIRQAITSLQFSS 383 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~ 383 (666)
.++||+|.|++.|+-.+
T Consensus 211 ~s~gdlr~al~~Lekl~ 227 (614)
T PRK14971 211 KADGGMRDALSIFDQVV 227 (614)
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 99999999999997764
No 47
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=6.9e-21 Score=208.59 Aligned_cols=216 Identities=17% Similarity=0.273 Sum_probs=149.0
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEE------c
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW------D 210 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~------n 210 (666)
...++||||++++|++||+..++.|+.++++ |+.+ +.+||+|||||||||+|+++|+.+.+.-..- +
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~------~~~~-ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRM------GRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHh------CCcc-eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 4578999999999999999999999999986 6666 6799999999999999999999997742100 0
Q ss_pred CCCchhhhhhhhcccCCcc---------ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLE---------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~---------~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l 281 (666)
...++.....+.....|.. .....+.++++.+.+...+. . ...+|+||||++.+... +
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~-----~---~~~kvvIIdea~~l~~~-~---- 143 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ-----K---GRYRVYIIDEVHMLSIA-A---- 143 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh-----c---CCeEEEEEeChhhCCHH-H----
Confidence 0111111110000000000 01235667777666642221 1 23579999999988642 2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 282 ~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
++.|+.+++.....+++|+.... ..+.+..|++ ||..+.|.+++.+++.+.|..++..+++.++++++
T Consensus 144 ~~~LLk~LEep~~~t~~Il~t~~-------~~kl~~tl~s-----R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 144 FNAFLKTLEEPPPHAIFIFATTE-------LHKIPATIAS-----RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred HHHHHHHHhcCCCCeEEEEEeCC-------hHHhHHHHHH-----HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23456666665433444433211 1222233333 58899999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhc
Q 005987 362 DLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
+.|+..++||+|.|++.|+-++.
T Consensus 212 ~~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 212 QLIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999997643
No 48
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.1e-20 Score=216.33 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=149.3
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
+.|.+||||++|+||+||++.++.|+.++.. ++.+ +.+||+||+|+||||+|+.+|+.+++.... ....++.
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~------~~i~-~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~-~~~~~c~ 75 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAE------GRVA-HAYLFTGPRGVGKTSTARILAKAVNCTTND-PKGRPCG 75 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHh------CCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCc
Confidence 4588999999999999999999999999986 5554 678999999999999999999999753210 0001111
Q ss_pred hhhhhhcccCCc--c-------ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHH
Q 005987 217 WQEYMHNCKTGL--E-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (666)
Q Consensus 217 ~~e~l~~~~~g~--~-------~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~ 287 (666)
.+..+.....|. . .....+.++++++.+..... . ...+||||||++.+... ++ +.|+.
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~-----~---~~~kVvIIDEa~~L~~~-a~----naLLk 142 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA-----L---ARYKVYIIDEVHMLSTA-AF----NALLK 142 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc-----c---CCeEEEEEeChHhCCHH-HH----HHHHH
Confidence 111110000010 0 12335667777766543221 1 23579999999988642 22 34566
Q ss_pred HHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 288 l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
+++.....++||+.... ..+.+..|++ ||..+.|.+++..++.++|..++.++++.++++++..|+..
T Consensus 143 ~LEepp~~tv~Il~t~~-------~~kll~tI~S-----R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPPHAIFILATTE-------VHKVPATILS-----RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCCCeEEEEEeCC-------hhhhhHHHHh-----ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66665433444433311 1222223332 59999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhc
Q 005987 368 SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~ 384 (666)
++||+|.|++.|+-++.
T Consensus 211 s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 211 ATGSMRDAENLLQQLAT 227 (585)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 49
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.6e-20 Score=213.53 Aligned_cols=216 Identities=18% Similarity=0.297 Sum_probs=151.3
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE----Ec--
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE----WD-- 210 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE----~n-- 210 (666)
+..++||||++|+|++||+..++.|++++.. ++.+ +.+||+||+||||||+|+++|+.+.+.... |.
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~------~ri~-ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRM------DRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 4568999999999999999999999999876 6666 679999999999999999999999874210 00
Q ss_pred CCCchhhhhhhhcccCCcc---------ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLE---------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~---------~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l 281 (666)
...++..+..+.....|.. -....++++++++.+...+ . . ..++|+||||++.+... +
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P-~----~---~~~KVvIIdEad~Lt~~-a---- 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP-Q----K---GRYRVYIIDEVHMLSTA-A---- 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh-h----c---CCCEEEEEeChhhcCHH-H----
Confidence 0011111111110011100 0123567777777664222 1 1 13579999999988643 2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 282 ~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
.+.|+.+++.....+++|+.... ..+.+..|++ ||..|.|.+++..++.+.|.+++..+++.++++++
T Consensus 144 ~naLLK~LEePp~~tv~IL~t~~-------~~kLl~TI~S-----Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal 211 (620)
T PRK14954 144 FNAFLKTLEEPPPHAIFIFATTE-------LHKIPATIAS-----RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADAL 211 (620)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCC-------hhhhhHHHHh-----hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34567777775443444433211 1233333333 59999999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhc
Q 005987 362 DLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
+.|+..++||+|.|++.|+-++.
T Consensus 212 ~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 212 QLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999986553
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.86 E-value=1.5e-20 Score=207.15 Aligned_cols=197 Identities=23% Similarity=0.376 Sum_probs=145.1
Q ss_pred ccccccCCCCccccccCHHHHHH---HHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEE---VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~e---l~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+|++||||++++|++|+++.+.. +..+++. +.. ..+||+|||||||||+|+++|+.++..++++++...
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------~~~--~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------GRL--SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------CCC--ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 69999999999999999999887 8888865 333 379999999999999999999999999999987541
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI 294 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~ 294 (666)
..+.++.+++.+..... .+.+.||+|||++.+... .++.|+..++.+.
T Consensus 73 ------------------~~~~ir~ii~~~~~~~~--------~g~~~vL~IDEi~~l~~~-----~q~~LL~~le~~~- 120 (413)
T PRK13342 73 ------------------GVKDLREVIEEARQRRS--------AGRRTILFIDEIHRFNKA-----QQDALLPHVEDGT- 120 (413)
T ss_pred ------------------cHHHHHHHHHHHHHhhh--------cCCceEEEEechhhhCHH-----HHHHHHHHhhcCc-
Confidence 12344555555532210 123579999999987532 2344666666543
Q ss_pred ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHHcCCc
Q 005987 295 PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QY-SLSTEQIDLVAQASGGD 371 (666)
Q Consensus 295 PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i-~v~~~~l~~Ia~~s~GD 371 (666)
+++|.+.+... ..... ..+++ ||..+.|.+++.+++..+|.+++... ++ .+++++++.|+..++||
T Consensus 121 -iilI~att~n~-----~~~l~---~aL~S--R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd 189 (413)
T PRK13342 121 -ITLIGATTENP-----SFEVN---PALLS--RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGD 189 (413)
T ss_pred -EEEEEeCCCCh-----hhhcc---HHHhc--cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCC
Confidence 33443322111 11111 23333 58999999999999999999988763 44 78999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 005987 372 IRQAITSLQFSSLK 385 (666)
Q Consensus 372 IR~AIn~LQf~~~~ 385 (666)
+|.++|.|+.++..
T Consensus 190 ~R~aln~Le~~~~~ 203 (413)
T PRK13342 190 ARRALNLLELAALG 203 (413)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998754
No 51
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=2.2e-20 Score=211.14 Aligned_cols=213 Identities=21% Similarity=0.267 Sum_probs=150.6
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
..|+.||||++|+|++||+..++.++.++.. ++.+ +.+|||||+|+||||+|+++|+.+++.-- ....++.
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~------~~i~-hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~--~~~~pC~ 74 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIES------NKIA-NAYIFSGPRGVGKTSSARAFARCLNCVNG--PTPMPCG 74 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhccccC--CCCCCCc
Confidence 5689999999999999999999999999986 6665 78999999999999999999999976410 0000111
Q ss_pred hhhhhhccc----------CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 217 WQEYMHNCK----------TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 217 ~~e~l~~~~----------~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
....+.... .|.. ....+.++++.+.+...+. ....+|+||||++.+... ..++|+
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas-~~~vddIr~l~e~~~~~p~--------~~~~KVvIIDEa~~Ls~~-----a~naLL 140 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS-NTSVQDVRQIKEEIMFPPA--------SSRYRVYIIDEVHMLSNS-----AFNALL 140 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc-cCCHHHHHHHHHHHHhchh--------cCCCEEEEEEChhhcCHH-----HHHHHH
Confidence 100000000 0110 1335567666666542221 124679999999988542 234466
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+++.....+++|.+.+. ..+.+..|++ ||..+.|.+++.+++.++|.+++..+++.++++++..|+.
T Consensus 141 K~LEepp~~~vfI~~tte-------~~kL~~tI~S-----Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~ 208 (563)
T PRK06647 141 KTIEEPPPYIVFIFATTE-------VHKLPATIKS-----RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAY 208 (563)
T ss_pred HhhccCCCCEEEEEecCC-------hHHhHHHHHH-----hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666765444555554421 1222233333 5999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhc
Q 005987 367 ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~ 384 (666)
.++||+|.|++.|+-++.
T Consensus 209 ~s~GdlR~alslLdklis 226 (563)
T PRK06647 209 KSTGSVRDAYTLFDQVVS 226 (563)
T ss_pred HcCCCHHHHHHHHHHHHh
Confidence 999999999999975443
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.86 E-value=4e-21 Score=196.99 Aligned_cols=199 Identities=22% Similarity=0.341 Sum_probs=151.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
..++.|+-||++++|.+||.+.+.+ ...|.+.+.. ++.| .++|+|||||||||+|+.||+.- .|.++|+.+.
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q-~gllrs~ieq--~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--NRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCc-chHHHHHHHc--CCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4589999999999999999999877 4444443332 5665 89999999999999999999876 4668888765
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHH-HHHHHHHhc
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR-QCLLLLVRS 291 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~-~~L~~l~~~ 291 (666)
. ....+++.+++.++++..+. +++.||||||+++. ++.+ +.++..++.
T Consensus 200 ~------------------a~t~dvR~ife~aq~~~~l~-------krkTilFiDEiHRF------NksQQD~fLP~VE~ 248 (554)
T KOG2028|consen 200 N------------------AKTNDVRDIFEQAQNEKSLT-------KRKTILFIDEIHRF------NKSQQDTFLPHVEN 248 (554)
T ss_pred c------------------cchHHHHHHHHHHHHHHhhh-------cceeEEEeHHhhhh------hhhhhhcccceecc
Confidence 3 23457888899988776542 46789999999865 3333 556667776
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hC---------CCCCH
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQ---------YSLST 358 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~---------i~v~~ 358 (666)
+ .|++++.++.+.+. .-...+++ ||.++.+++++.+.+..+|.+.... +. +.+++
T Consensus 249 G---~I~lIGATTENPSF-------qln~aLlS--RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~ 316 (554)
T KOG2028|consen 249 G---DITLIGATTENPSF-------QLNAALLS--RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVED 316 (554)
T ss_pred C---ceEEEecccCCCcc-------chhHHHHh--ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhH
Confidence 6 45666776665532 22234444 5999999999999999999995442 11 34788
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Q 005987 359 EQIDLVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 359 ~~l~~Ia~~s~GDIR~AIn~LQf~ 382 (666)
.+|+.|+..|.||.|.|+|.||+.
T Consensus 317 siidyla~lsdGDaR~aLN~Lems 340 (554)
T KOG2028|consen 317 SIIDYLAYLSDGDARAALNALEMS 340 (554)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHH
Confidence 999999999999999999999998
No 53
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.1e-20 Score=208.04 Aligned_cols=215 Identities=20% Similarity=0.374 Sum_probs=162.1
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
+..+.||||++|+|++||+..++.|++.+.. ++.. +.+||+||.||||||+||.+|+.+++.-- ...+++.
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~------~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~~--~~~ePC~ 74 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALEN------GRIA-HAYLFSGPRGVGKTTIARILAKALNCENG--PTAEPCG 74 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHh------Ccch-hhhhhcCCCCcCchhHHHHHHHHhcCCCC--CCCCcch
Confidence 4578899999999999999999999999987 6666 78999999999999999999999987631 1112222
Q ss_pred hhhhhhcccCC--c-------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHH
Q 005987 217 WQEYMHNCKTG--L-------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (666)
Q Consensus 217 ~~e~l~~~~~g--~-------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~ 287 (666)
-+..+.+...| + .....+++++++++++. |... ..+.+|++|||++++... +|+ +|++
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~-y~P~-------~~ryKVyiIDEvHMLS~~-afN----ALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVN-YAPS-------EGRYKVYIIDEVHMLSKQ-AFN----ALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhc-cCCc-------cccceEEEEecHHhhhHH-HHH----HHhc
Confidence 22222222222 1 12456778999998884 4322 235689999999988543 444 4556
Q ss_pred HHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 288 l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
.++.....++||..++... +. +..+++ ||+.+.|++++.++|.+.|..|+.+|++.++++++..|+..
T Consensus 142 TLEEPP~hV~FIlATTe~~-------Ki---p~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~ 209 (515)
T COG2812 142 TLEEPPSHVKFILATTEPQ-------KI---PNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA 209 (515)
T ss_pred ccccCccCeEEEEecCCcC-------cC---chhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 6676665677776665432 22 234555 59999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHH-HHhcC
Q 005987 368 SGGDIRQAITSLQ-FSSLK 385 (666)
Q Consensus 368 s~GDIR~AIn~LQ-f~~~~ 385 (666)
++|.+|-+++.|. +.+.+
T Consensus 210 a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 210 AEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred cCCChhhHHHHHHHHHHcc
Confidence 9999999999995 44443
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.84 E-value=4.7e-20 Score=213.27 Aligned_cols=199 Identities=22% Similarity=0.353 Sum_probs=142.4
Q ss_pred CCccccccCCCCccccccCHHHHH---HHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVE---EVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~---el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
..+|++||||++++|++|++..+. .++.+++. ++.+ .+||+|||||||||+|+++|+.++..++++++.
T Consensus 15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~------~~~~--slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------DRVG--SLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------CCCc--eEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 468999999999999999999985 45565553 4443 789999999999999999999999888888865
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~ 292 (666)
.. + .+.++..++.+...... .+...+|||||++.++.. .++.|...++.+
T Consensus 87 ~~------------~------i~dir~~i~~a~~~l~~-------~~~~~IL~IDEIh~Ln~~-----qQdaLL~~lE~g 136 (725)
T PRK13341 87 LA------------G------VKDLRAEVDRAKERLER-------HGKRTILFIDEVHRFNKA-----QQDALLPWVENG 136 (725)
T ss_pred hh------------h------hHHHHHHHHHHHHHhhh-------cCCceEEEEeChhhCCHH-----HHHHHHHHhcCc
Confidence 31 1 12233334433221100 013469999999987542 233456666654
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHH
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICR-------QEQYSLSTEQIDLVA 365 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~-------~e~i~v~~~~l~~Ia 365 (666)
. + +++++++.+. ...-...+++ ||..+.|+|++.+++..+|++++. .+++.+++++++.|+
T Consensus 137 ~--I-iLI~aTTenp-------~~~l~~aL~S--R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La 204 (725)
T PRK13341 137 T--I-TLIGATTENP-------YFEVNKALVS--RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLV 204 (725)
T ss_pred e--E-EEEEecCCCh-------HhhhhhHhhc--cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHH
Confidence 2 3 3444332221 1111123333 588999999999999999999998 467889999999999
Q ss_pred HHcCCcHHHHHHHHHHHhc
Q 005987 366 QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~ 384 (666)
..+.||+|.++|.|+.++.
T Consensus 205 ~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 205 DVANGDARSLLNALELAVE 223 (725)
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 55
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.84 E-value=3.7e-21 Score=195.40 Aligned_cols=207 Identities=21% Similarity=0.261 Sum_probs=149.7
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC------CcEE
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG------ARLY 207 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg------~~vi 207 (666)
...++|++||+|..+.|+++|+..+..+.++... ++.| ++|+|||||+|||+++.+.|+.+. ..+.
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM------PGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccC------CCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 4578999999999999999999998888777332 5555 899999999999999999999983 2367
Q ss_pred EEcCCCchhhhhhhhcccCCccccc-hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHH
Q 005987 208 EWDTPTPTIWQEYMHNCKTGLEYTS-KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (666)
Q Consensus 208 E~nasd~~~~~e~l~~~~~g~~~~s-~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~ 286 (666)
|+|++++ +|..... +...|. +......|. .....+++|+||+|.+.. ++.+.++..++
T Consensus 98 elnaSd~-----------rgid~vr~qi~~fa-st~~~~~fs--------t~~~fKlvILDEADaMT~-~AQnALRRvie 156 (360)
T KOG0990|consen 98 ELNASDD-----------RGIDPVRQQIHLFA-STQQPTTYS--------THAAFKLVILDEADAMTR-DAQNALRRVIE 156 (360)
T ss_pred HhhccCc-----------cCCcchHHHHHHHH-hhccceecc--------ccCceeEEEecchhHhhH-HHHHHHHHHHH
Confidence 8888773 4444321 111111 111111111 112357999999998743 33445555555
Q ss_pred HHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 287 ~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.+..+. .++++++. .....+.+++ ||+.++|.|++.+.+..++..+|..|....+++....++.
T Consensus 157 k~t~n~---rF~ii~n~--------~~ki~pa~qs-----Rctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 157 KYTANT---RFATISNP--------PQKIHPAQQS-----RCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR 220 (360)
T ss_pred Hhccce---EEEEeccC--------hhhcCchhhc-----ccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH
Confidence 554444 34455542 2333334443 6999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhcC
Q 005987 367 ASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~ 385 (666)
.+.||+|.|+|.||..+..
T Consensus 221 ~s~gDmr~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 221 LSVGDMRVALNYLQSILKK 239 (360)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=1.7e-18 Score=185.35 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=140.5
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
...+|-.+|||+++++++|+++.++.+..++..+... +. +.+++||+||||||||++|+++|++++..+...+.+..
T Consensus 11 ~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--~~-~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 11 EEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--GE-ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred ccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--CC-CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 3567889999999999999999999999999865432 22 23689999999999999999999999988776654421
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH-----
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV----- 289 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~----- 289 (666)
.....+..++... ..+.||+|||++.+... ..+.+...+....
T Consensus 88 -----------------~~~~~l~~~l~~l--------------~~~~vl~IDEi~~l~~~-~~e~l~~~~e~~~~~~~l 135 (328)
T PRK00080 88 -----------------EKPGDLAAILTNL--------------EEGDVLFIDEIHRLSPV-VEEILYPAMEDFRLDIMI 135 (328)
T ss_pred -----------------cChHHHHHHHHhc--------------ccCCEEEEecHhhcchH-HHHHHHHHHHhcceeeee
Confidence 0112333343322 12459999999987542 1122222222210
Q ss_pred hcC--------CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 290 RST--------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 290 ~~~--------~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
... ..|-++++..++... ....+|++ | ....+.|.+++.+++.++|.+.+...++.++++++
T Consensus 136 ~~~~~~~~~~~~l~~~~li~at~~~~------~l~~~L~s---R-f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~ 205 (328)
T PRK00080 136 GKGPAARSIRLDLPPFTLIGATTRAG------LLTSPLRD---R-FGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGA 205 (328)
T ss_pred ccCccccceeecCCCceEEeecCCcc------cCCHHHHH---h-cCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 000 112223333322211 11122333 2 24679999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHH
Q 005987 362 DLVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf~ 382 (666)
+.|+..|+|+.|.|.+.|+..
T Consensus 206 ~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 206 LEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHHHHHcCCCchHHHHHHHHH
Confidence 999999999999999999864
No 57
>PRK04132 replication factor C small subunit; Provisional
Probab=99.77 E-value=1.4e-17 Score=193.68 Aligned_cols=250 Identities=17% Similarity=0.230 Sum_probs=173.6
Q ss_pred EEEEEC--CCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 180 VLVITG--QAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 180 ~LLL~G--PpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
.-+..| |.++||||+|++||+++ +.+++|+|+++.+ | .+.+++++..+..+..+.
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----------g------id~IR~iIk~~a~~~~~~- 627 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----------G------INVIREKVKEFARTKPIG- 627 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----------c------HHHHHHHHHHHHhcCCcC-
Confidence 356678 99999999999999998 5689999999732 2 346666776655443221
Q ss_pred CCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeE
Q 005987 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARK 330 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~ 330 (666)
..+.+|+||||+|.++.. .+++|+.+++. ...++|++|++ ..+.+++|++ ||+.
T Consensus 628 -----~~~~KVvIIDEaD~Lt~~-----AQnALLk~lEep~~~~~FILi~N~---------~~kIi~tIrS-----RC~~ 683 (846)
T PRK04132 628 -----GASFKIIFLDEADALTQD-----AQQALRRTMEMFSSNVRFILSCNY---------SSKIIEPIQS-----RCAI 683 (846)
T ss_pred -----CCCCEEEEEECcccCCHH-----HHHHHHHHhhCCCCCeEEEEEeCC---------hhhCchHHhh-----hceE
Confidence 123579999999998642 34457777775 34455555443 2344455554 6999
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCC
Q 005987 331 VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHG 410 (666)
Q Consensus 331 I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 410 (666)
+.|.+++.+++.++|.++|.+|++.++++++..|+..|+||+|.|||.||.++....... .+
T Consensus 684 i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It------------------~~ 745 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKIT------------------DE 745 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC------------------HH
Confidence 999999999999999999999999999999999999999999999999999876432110 01
Q ss_pred CcccccCCccccchHHHHhHHhhCCCCCCccccccccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCC
Q 005987 411 GFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDF 490 (666)
Q Consensus 411 ~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f 490 (666)
.+..+.+++..-.++..+..++.++ ... ..+ .-.+++...+.++..++.-+++.+...
T Consensus 746 ~V~~~~~~~~~~~I~~il~~~l~~~-~~~-----------ar~----------~l~ell~~~G~~~~~iL~~l~~~l~~~ 803 (846)
T PRK04132 746 NVFLVASRARPEDIREMMLLALKGN-FLK-----------ARE----------KLREILLKQGLSGEDVLVQMHREVFNL 803 (846)
T ss_pred HHHHHhCCCCHHHHHHHHHHHhcCc-HHH-----------HHH----------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 1123345666667888888777643 100 000 012345566778888888888887543
Q ss_pred -CCcchHHHHHHHHHHhhHhhhccc
Q 005987 491 -ISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 491 -~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
.++ ......++.++++|..+.
T Consensus 804 ~i~~---~~k~~ll~~lae~e~rl~ 825 (846)
T PRK04132 804 PIDE---PKKVELADKIGEYNFRLV 825 (846)
T ss_pred CCCH---HHHHHHHHHHHHHhHHHH
Confidence 332 233456788888888765
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=2.3e-16 Score=167.09 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=127.8
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhccc
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCK 225 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~ 225 (666)
++|+|++|+++.++.|..|+...... .+. .++++|+||||||||++++++|++++..+.....+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-~~~--~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~----------- 66 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-QEA--LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----------- 66 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-CCC--CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-----------
Confidence 47899999999999999999865432 122 2579999999999999999999999887665543320
Q ss_pred CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHH-----hc---------
Q 005987 226 TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV-----RS--------- 291 (666)
Q Consensus 226 ~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~-----~~--------- 291 (666)
.....+..++... +.+.+|+|||++.+.... .+.+...+.... ..
T Consensus 67 ------~~~~~l~~~l~~~--------------~~~~vl~iDEi~~l~~~~-~e~l~~~~~~~~~~~v~~~~~~~~~~~~ 125 (305)
T TIGR00635 67 ------EKPGDLAAILTNL--------------EEGDVLFIDEIHRLSPAV-EELLYPAMEDFRLDIVIGKGPSARSVRL 125 (305)
T ss_pred ------cCchhHHHHHHhc--------------ccCCEEEEehHhhhCHHH-HHHhhHHHhhhheeeeeccCccccceee
Confidence 0112233333221 123599999999876432 222322222111 00
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GD 371 (666)
...|.+ ++..++... .....++ +| ....+.|.+++.+++.++|++++...++.+++++++.|++.++||
T Consensus 126 ~~~~~~-li~~t~~~~------~l~~~l~---sR-~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~ 194 (305)
T TIGR00635 126 DLPPFT-LVGATTRAG------MLTSPLR---DR-FGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT 194 (305)
T ss_pred cCCCeE-EEEecCCcc------ccCHHHH---hh-cceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 011233 333222111 1111222 22 235789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005987 372 IRQAITSLQFSS 383 (666)
Q Consensus 372 IR~AIn~LQf~~ 383 (666)
+|.+++.+..+.
T Consensus 195 pR~~~~ll~~~~ 206 (305)
T TIGR00635 195 PRIANRLLRRVR 206 (305)
T ss_pred cchHHHHHHHHH
Confidence 999998887653
No 59
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.71 E-value=4.1e-16 Score=176.89 Aligned_cols=218 Identities=18% Similarity=0.284 Sum_probs=139.0
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCcEE
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLY 207 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~vi 207 (666)
.+-.-|.| +.|.++++.+++|..+|..++.. ..+.++|+|+||||||||++++.+++++ .+.++
T Consensus 747 vL~~DYVP---D~LPhREeEIeeLasfL~paIkg---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vV 820 (1164)
T PTZ00112 747 MMQLDVVP---KYLPCREKEIKEVHGFLESGIKQ---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVF 820 (1164)
T ss_pred HcCcccCC---CcCCChHHHHHHHHHHHHHHHhc---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 45667888 56799999999999999988763 3333567899999999999999998877 36788
Q ss_pred EEcCCCch----hhhhhhhcccCCccc---cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHH
Q 005987 208 EWDTPTPT----IWQEYMHNCKTGLEY---TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER 280 (666)
Q Consensus 208 E~nasd~~----~~~e~l~~~~~g~~~---~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~ 280 (666)
++|+.... .+...... ..+... .+..+.+..++..+.. ..+...||+|||+|.+....
T Consensus 821 YINCm~Lstp~sIYqvI~qq-L~g~~P~~GlsS~evLerLF~~L~k----------~~r~v~IIILDEID~L~kK~---- 885 (1164)
T PTZ00112 821 EINGMNVVHPNAAYQVLYKQ-LFNKKPPNALNSFKILDRLFNQNKK----------DNRNVSILIIDEIDYLITKT---- 885 (1164)
T ss_pred EEeCCccCCHHHHHHHHHHH-HcCCCCCccccHHHHHHHHHhhhhc----------ccccceEEEeehHhhhCccH----
Confidence 99985421 12221111 111111 1122333333333211 11224599999999886532
Q ss_pred HHHHHHHHHhc---CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 281 LRQCLLLLVRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 281 l~~~L~~l~~~---~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
+++|..+++. ....++ +++.++. .+...+..+.+++. .+...|.|.|++.+++..+|...+......++
T Consensus 886 -QDVLYnLFR~~~~s~SKLi-LIGISNd---lDLperLdPRLRSR---Lg~eeIvF~PYTaEQL~dILk~RAe~A~gVLd 957 (1164)
T PTZ00112 886 -QKVLFTLFDWPTKINSKLV-LIAISNT---MDLPERLIPRCRSR---LAFGRLVFSPYKGDEIEKIIKERLENCKEIID 957 (1164)
T ss_pred -HHHHHHHHHHhhccCCeEE-EEEecCc---hhcchhhhhhhhhc---cccccccCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 1223333321 112222 2222221 12223333444443 23456999999999999999999886555689
Q ss_pred HHHHHHHHH---HcCCcHHHHHHHHHHHhc
Q 005987 358 TEQIDLVAQ---ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~---~s~GDIR~AIn~LQf~~~ 384 (666)
+++|+.||. ...||+|.||+.|..+..
T Consensus 958 DdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 958 HTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 999999998 678999999999998764
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.7e-16 Score=156.95 Aligned_cols=194 Identities=18% Similarity=0.242 Sum_probs=140.6
Q ss_pred cccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
.-...||++++|++||++..+.+.-+++..... +. ..-++||+||||.||||+|+.+|+|+|..+.....|.
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--~e-~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~----- 87 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--GE-ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPA----- 87 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhc--CC-CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccc-----
Confidence 445679999999999999999999999976542 22 2258999999999999999999999998876555442
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC------
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST------ 292 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~------ 292 (666)
-.+..++..++..+ ...-|+||||++.++.. +.+.|+..++.-
T Consensus 88 ------------leK~gDlaaiLt~L--------------e~~DVLFIDEIHrl~~~-----vEE~LYpaMEDf~lDI~I 136 (332)
T COG2255 88 ------------LEKPGDLAAILTNL--------------EEGDVLFIDEIHRLSPA-----VEEVLYPAMEDFRLDIII 136 (332)
T ss_pred ------------ccChhhHHHHHhcC--------------CcCCeEEEehhhhcChh-----HHHHhhhhhhheeEEEEE
Confidence 11222333333322 13459999999988642 223444444331
Q ss_pred -----------CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 293 -----------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 293 -----------~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
..|-+-++++++.... .-.+|+.. .....+++-++.+++.+++.+-+...++.+++++.
T Consensus 137 G~gp~Arsv~ldLppFTLIGATTr~G~------lt~PLrdR----FGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a 206 (332)
T COG2255 137 GKGPAARSIRLDLPPFTLIGATTRAGM------LTNPLRDR----FGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAA 206 (332)
T ss_pred ccCCccceEeccCCCeeEeeecccccc------ccchhHHh----cCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHH
Confidence 2244445555443221 22345553 35578999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHH
Q 005987 362 DLVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf 381 (666)
..||..|.|-.|-|.+.|.-
T Consensus 207 ~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 207 LEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred HHHHHhccCCcHHHHHHHHH
Confidence 99999999999999998854
No 61
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.6e-16 Score=169.24 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=140.2
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC------------------------C
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG------------------------A 204 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg------------------------~ 204 (666)
+++++++..+.++..|...+ ++.+ +.+||+||||+||||+|.++|+++. .
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~-----~~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES-----GRLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCcccchhHHHHHHHHHHhc-----CCCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 46789999999999999975 4444 4699999999999999999999997 6
Q ss_pred cEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~ 284 (666)
+++|+++++.+. .. -..+.++++.+..... +.....+||||||+|.+... ..++
T Consensus 75 d~lel~~s~~~~-----------~~--i~~~~vr~~~~~~~~~--------~~~~~~kviiidead~mt~~-----A~na 128 (325)
T COG0470 75 DFLELNPSDLRK-----------ID--IIVEQVRELAEFLSES--------PLEGGYKVVIIDEADKLTED-----AANA 128 (325)
T ss_pred ceEEecccccCC-----------Cc--chHHHHHHHHHHhccC--------CCCCCceEEEeCcHHHHhHH-----HHHH
Confidence 888888887331 10 1223344444333211 11234679999999988642 2344
Q ss_pred HHHHHhcCC--CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 285 LLLLVRSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 285 L~~l~~~~~--~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
++..++... .|+|++++. ..+.+++|++ ||..|.|+| .+.+..|+..+ ++.+.
T Consensus 129 llk~lEep~~~~~~il~~n~---------~~~il~tI~S-----Rc~~i~f~~------~~~~~~i~~~e-----~~~l~ 183 (325)
T COG0470 129 LLKTLEEPPKNTRFILITND---------PSKILPTIRS-----RCQRIRFKP------PSRLEAIAWLE-----DQGLE 183 (325)
T ss_pred HHHHhccCCCCeEEEEEcCC---------hhhccchhhh-----cceeeecCC------chHHHHHHHhh-----ccchh
Confidence 555555543 344444332 2345555665 699999999 45666676666 77889
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCC
Q 005987 363 LVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKR 436 (666)
Q Consensus 363 ~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr 436 (666)
.++..+.||+|++||.||..+.. ++.....|+++..+++...
T Consensus 184 ~i~~~~~gd~r~~i~~lq~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 225 (325)
T COG0470 184 EIAAVAEGDARKAINPLQALAAL--------------------------------EIGEESIYEALLLALPESL 225 (325)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh--------------------------------cccHHHHHHHHHhhChhhc
Confidence 99999999999999999999863 3345678888888888654
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=2.3e-15 Score=152.93 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=123.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~ 220 (666)
.|.+|+++++++.. ..+..+.+.+ . .... +.++|+||||||||++++++|+++ +..+..++....
T Consensus 11 ~~~~fd~f~~~~~~-~~~~~~~~~~-~---~~~~-~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~------ 78 (229)
T PRK06893 11 DDETLDNFYADNNL-LLLDSLRKNF-I---DLQQ-PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS------ 78 (229)
T ss_pred CcccccccccCChH-HHHHHHHHHh-h---ccCC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh------
Confidence 46789999977643 2333333332 2 1111 468999999999999999999986 334443332110
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHH-HHHHHHHHHHhcCCCceEEE
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE-RLRQCLLLLVRSTHIPTAVV 299 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~-~l~~~L~~l~~~~~~PiViI 299 (666)
......+++... ...+|+|||++.+.+..... .+...+....+.+ .+++++
T Consensus 79 -------------~~~~~~~~~~~~--------------~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~-~~illi 130 (229)
T PRK06893 79 -------------QYFSPAVLENLE--------------QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQG-KTLLLI 130 (229)
T ss_pred -------------hhhhHHHHhhcc--------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 000012222221 23499999999875433222 2334344443333 344444
Q ss_pred EecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 300 LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 300 it~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
.++.. +..++ -.++.|++++.. +..+++++|+.+++.++|++.+..+++.++++++++|+..+.||+|.+++.|
T Consensus 131 ts~~~-p~~l~---~~~~~L~sRl~~--g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 131 SADCS-PHALS---IKLPDLASRLTW--GEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred eCCCC-hHHcc---ccchhHHHHHhc--CCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 44432 22111 123456665442 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 005987 380 QFSS 383 (666)
Q Consensus 380 Qf~~ 383 (666)
+-+.
T Consensus 205 ~~l~ 208 (229)
T PRK06893 205 DLLD 208 (229)
T ss_pred HHHH
Confidence 8653
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=3.7e-15 Score=159.97 Aligned_cols=205 Identities=16% Similarity=0.246 Sum_probs=133.6
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcE------EEEc-CCCc
Q 005987 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL------YEWD-TPTP 214 (666)
Q Consensus 142 KY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~v------iE~n-asd~ 214 (666)
...|+.+.+|+||++.++.+...+.. |+.+ +.+||+||+|+||||+|+.+|+.+.+.- .... +...
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~------grl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYRE------GKLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHc------CCCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 37899999999999999999999886 7766 7899999999999999999999996521 1111 1111
Q ss_pred hhhhhhhh-cccCCc--------------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHH
Q 005987 215 TIWQEYMH-NCKTGL--------------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE 279 (666)
Q Consensus 215 ~~~~e~l~-~~~~g~--------------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~ 279 (666)
+.....+. ....++ ...-.+++++.+.+...... ..+..+|+||||++.++... .+
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~--------~~g~~rVviIDeAd~l~~~a-an 159 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS--------GDGNWRIVIIDPADDMNRNA-AN 159 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc--------ccCCceEEEEEchhhcCHHH-HH
Confidence 11111110 000000 00111344444333222110 11245799999999986432 23
Q ss_pred HHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 280 RLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 280 ~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
+|+..++... ..+++++++. ..+.++.+++ ||..++|.|++.+++.++|...+...+ +++
T Consensus 160 ----aLLk~LEEpp~~~~fiLit~~--------~~~llptIrS-----Rc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~ 220 (351)
T PRK09112 160 ----AILKTLEEPPARALFILISHS--------SGRLLPTIRS-----RCQPISLKPLDDDELKKALSHLGSSQG--SDG 220 (351)
T ss_pred ----HHHHHHhcCCCCceEEEEECC--------hhhccHHHHh-----hccEEEecCCCHHHHHHHHHHhhcccC--CCH
Confidence 3555555532 3455555541 1233444443 599999999999999999998664444 778
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Q 005987 359 EQIDLVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 359 ~~l~~Ia~~s~GDIR~AIn~LQf 381 (666)
+++..|+..++|++|.|++.|+.
T Consensus 221 ~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 221 EITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Confidence 99999999999999999988754
No 64
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.66 E-value=8.1e-15 Score=149.49 Aligned_cols=189 Identities=10% Similarity=0.149 Sum_probs=126.5
Q ss_pred Cccccc--cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhh
Q 005987 147 SLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYM 221 (666)
Q Consensus 147 sl~eLv--g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l 221 (666)
+|++++ .+...+..+..|...+ . .+.++|+||||||||++++++|+++ |..+..++....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~------~--~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~------- 84 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQE------H--SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR------- 84 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCC------C--CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH-------
Confidence 566666 4666777777766432 1 1479999999999999999999976 344444443110
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceEEEE
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVL 300 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiViIi 300 (666)
.. ...++++.... ..+|+|||++.+.+... ...+...+....+.++. .++++
T Consensus 85 ---------~~---~~~~~~~~~~~--------------~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~-~li~t 137 (235)
T PRK08084 85 ---------AW---FVPEVLEGMEQ--------------LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRT-RLLIT 137 (235)
T ss_pred ---------hh---hhHHHHHHhhh--------------CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCC-eEEEe
Confidence 00 01122222211 13899999998765332 23344555566555443 34455
Q ss_pred ecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005987 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (666)
Q Consensus 301 t~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQ 380 (666)
++ ..+..+ ...++.|++++.. +.++.+.+|+.+++.++|++.+..+++.++++++++|+..+.||+|.+++.|+
T Consensus 138 s~-~~p~~l---~~~~~~L~SRl~~--g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 138 GD-RPPRQL---NLGLPDLASRLDW--GQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred CC-CChHHc---CcccHHHHHHHhC--CceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 54 222111 1134567776543 58999999999999999999898899999999999999999999999999998
Q ss_pred HHh
Q 005987 381 FSS 383 (666)
Q Consensus 381 f~~ 383 (666)
.+-
T Consensus 212 ~l~ 214 (235)
T PRK08084 212 QLD 214 (235)
T ss_pred HHH
Confidence 753
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.66 E-value=4.5e-15 Score=153.88 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=124.9
Q ss_pred CccccccCHHHHHHHH---HHHHHhhc----CCCCCCCccEEEEECCCCchHHHHHHHHHHHc---C----CcEEEEcCC
Q 005987 147 SLEELAVQRKKVEEVR---AWFEERLG----DSKDKFSTNVLVITGQAGVGKTATVRQIASHL---G----ARLYEWDTP 212 (666)
Q Consensus 147 sl~eLvg~~k~i~el~---~wL~~~~~----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g----~~viE~nas 212 (666)
.+++|+|.+.+.+.|+ .|++.... +........++||+|||||||||+|+++|+++ + ..+++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 3577889877766665 44432111 11111122479999999999999999999986 2 245555443
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch--hHHH-HHHHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--TAFE-RLRQCLLLLV 289 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~--~~~~-~l~~~L~~l~ 289 (666)
+. .+..+........++++++. +.||||||++.+... ..+. ...+.|...+
T Consensus 84 ~l-----------~~~~~g~~~~~~~~~~~~a~---------------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~ 137 (261)
T TIGR02881 84 DL-----------VGEYIGHTAQKTREVIKKAL---------------GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM 137 (261)
T ss_pred Hh-----------hhhhccchHHHHHHHHHhcc---------------CCEEEEechhhhccCCccchHHHHHHHHHHHH
Confidence 31 11111112233344444331 249999999987421 1111 2334455666
Q ss_pred hcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--
Q 005987 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA-- 367 (666)
Q Consensus 290 ~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-- 367 (666)
+..+..+++|++.... ..+.....- +.+.+| ....|.|++++.+++.+++++++...++.++++++..|++.
T Consensus 138 e~~~~~~~vila~~~~--~~~~~~~~~---p~L~sR-f~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~ 211 (261)
T TIGR02881 138 EDNRNEFVLILAGYSD--EMDYFLSLN---PGLRSR-FPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLY 211 (261)
T ss_pred hccCCCEEEEecCCcc--hhHHHHhcC---hHHHhc-cceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 6555555555543221 111111111 222222 13679999999999999999999999999999999888653
Q ss_pred --------cCCcHHHHHHHHHHHhc
Q 005987 368 --------SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 368 --------s~GDIR~AIn~LQf~~~ 384 (666)
+.||.|.+.|.++.+..
T Consensus 212 ~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 212 KVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHH
Confidence 36999999999998764
No 66
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.65 E-value=1.6e-15 Score=171.74 Aligned_cols=221 Identities=19% Similarity=0.297 Sum_probs=134.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~ 205 (666)
+++|.+||||++|++++|++..++.++..+.. .. + .++||+||||||||++|+++.++. +..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------~~-~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------PN-P-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------CC-C-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 67899999999999999999999999876532 22 2 479999999999999999998753 246
Q ss_pred EEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhc--CCCCCCCC--CCCCceEEEEeCCCCCcchhHHHHH
Q 005987 206 LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYG--STSPSIPG--ESKSSAILLIDDLPVTNGRTAFERL 281 (666)
Q Consensus 206 viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~--~l~~s~~~--~~~~~~IIlIDEid~l~~~~~~~~l 281 (666)
++++++...+.....+.+...|.. .+- +...+..++ ..+....| ......+|+|||++.++.. ..+.+
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~----~~p---~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-~q~~L 195 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSV----HDP---IYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-QMNKL 195 (531)
T ss_pred EEEEccccccCCccccchhhcCCc----ccc---hhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-HHHHH
Confidence 788886531100000000000000 000 000000000 00000000 0112459999999998653 23444
Q ss_pred HHHHHHH---Hh-----c--------------CCCc--eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCC
Q 005987 282 RQCLLLL---VR-----S--------------THIP--TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (666)
Q Consensus 282 ~~~L~~l---~~-----~--------------~~~P--iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s 337 (666)
...|..- +. . ...| +.+|++++.... ...+.+++ ||..|.|.+++
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~------~L~paLrs-----R~~~I~f~pL~ 264 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE------EIPPALRS-----RCVEIFFRPLL 264 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc------cCChHHhh-----hhheeeCCCCC
Confidence 3333220 00 0 0111 223333222111 12223332 58999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 338 ~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
.+++..++++.+.+.++.+++++++.|+..+. |.|.++|.+|.++.
T Consensus 265 ~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999999988774 99999999999874
No 67
>PRK08727 hypothetical protein; Validated
Probab=99.65 E-value=1.5e-14 Score=147.41 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=121.3
Q ss_pred CCccccccCHH-HHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhh
Q 005987 146 RSLEELAVQRK-KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYM 221 (666)
Q Consensus 146 ~sl~eLvg~~k-~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l 221 (666)
.+|+++++.+. .+..+..+.. +.. .+.++|+||+|||||+++++++.++ |..++.++..+
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~-------~~~-~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-------- 79 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAA-------GQS-SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-------- 79 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHh-------ccC-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH--------
Confidence 36777776543 3333332221 222 2579999999999999999998775 55555554321
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHH-HHHHHHHHHHHhcCCCceEEEE
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF-ERLRQCLLLLVRSTHIPTAVVL 300 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~-~~l~~~L~~l~~~~~~PiViIi 300 (666)
....+.++++.... .-+|+|||++.+.+.... ..+...+....+ .+.+ ++++
T Consensus 80 -----------~~~~~~~~~~~l~~--------------~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~-~~~~-vI~t 132 (233)
T PRK08727 80 -----------AAGRLRDALEALEG--------------RSLVALDGLESIAGQREDEVALFDFHNRARA-AGIT-LLYT 132 (233)
T ss_pred -----------hhhhHHHHHHHHhc--------------CCEEEEeCcccccCChHHHHHHHHHHHHHHH-cCCe-EEEE
Confidence 01122333333322 238999999987643221 122232222222 2233 4444
Q ss_pred ecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005987 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (666)
Q Consensus 301 t~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQ 380 (666)
++.. +.. ....++.|++.+.. +..+.|++|+.+++..+|+++|..+++.+++++++.|++.++||+|.+++.|+
T Consensus 133 s~~~-p~~---l~~~~~dL~SRl~~--~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~ 206 (233)
T PRK08727 133 ARQM-PDG---LALVLPDLRSRLAQ--CIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred CCCC-hhh---hhhhhHHHHHHHhc--CceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4422 111 12234566666543 78999999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 005987 381 FSS 383 (666)
Q Consensus 381 f~~ 383 (666)
.+-
T Consensus 207 ~l~ 209 (233)
T PRK08727 207 RLD 209 (233)
T ss_pred HHH
Confidence 653
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=1.2e-14 Score=158.15 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=127.4
Q ss_pred CccccccCHHHHHHHHHHHHHhhcC---CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh-
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGD---SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH- 222 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~---~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~- 222 (666)
.+++|+||++.++.+++++...... ..++.+ +.+||+||||+|||++|+.+|+.+.+.-....+...+..+..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~-ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMT-HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCC-eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 5789999999999999999874311 001234 78999999999999999999999866421100000110000000
Q ss_pred cccCCc------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce
Q 005987 223 NCKTGL------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 223 ~~~~g~------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi 296 (666)
.....+ ...-..++++++++.+...+. ....+|+||||+|.+.... .+.|+..++......
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~--------~~~~kViiIDead~m~~~a-----anaLLk~LEep~~~~ 148 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPS--------TGRWRIVVIEDADRLTERA-----ANALLKAVEEPPPRT 148 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcc--------cCCcEEEEEechhhcCHHH-----HHHHHHHhhcCCCCC
Confidence 000000 012235667777776643221 1246799999999986432 245666667654444
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
++|++.++. ...++.|++ ||..|.|.+|+.+++.+.|.+ .. .++++.+..++..++|+++.|+
T Consensus 149 ~fIL~a~~~-------~~llpTIrS-----Rc~~i~f~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 149 VWLLCAPSP-------EDVLPTIRS-----RCRHVALRTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRAR 211 (394)
T ss_pred eEEEEECCh-------HHChHHHHh-----hCeEEECCCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHH
Confidence 444443221 123333333 599999999999999988873 22 3678889999999999999886
Q ss_pred HHH
Q 005987 377 TSL 379 (666)
Q Consensus 377 n~L 379 (666)
..+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 553
No 69
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-14 Score=158.48 Aligned_cols=200 Identities=18% Similarity=0.270 Sum_probs=139.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcC----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
+|.+|-|.++.+.+|...+-..... .-|-.|++.+|||||||||||.+|+++|.+++..++.++++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei-------- 259 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI-------- 259 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh--------
Confidence 5899999999999999988753221 1255566899999999999999999999999999999999862
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-----HH-HHHHHHHHHHHhcC----
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-----AF-ERLRQCLLLLVRST---- 292 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-----~~-~~l~~~L~~l~~~~---- 292 (666)
..|+. ....+.++++++++..+ .|+|+||||+|-+..+. .. +++...|+..++.-
T Consensus 260 --vSGvS-GESEkkiRelF~~A~~~------------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 260 --VSGVS-GESEKKIRELFDQAKSN------------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred --hcccC-cccHHHHHHHHHHHhcc------------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 23332 34567788889888654 37999999999875431 11 12222333333321
Q ss_pred --CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 005987 293 --HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (666)
Q Consensus 293 --~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G 370 (666)
.-| |+++++++.+++.|...|+... .-..|.+.-|+.+...++|+.+|....+.- +-....||..+.|
T Consensus 325 ~~g~~-VlVIgATnRPDslDpaLRRaGR--------FdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPG 394 (802)
T KOG0733|consen 325 TKGDP-VLVIGATNRPDSLDPALRRAGR--------FDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPG 394 (802)
T ss_pred cCCCC-eEEEecCCCCcccCHHHhcccc--------ccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCC
Confidence 135 5566777777765543332211 134699999999999999999998655443 3345778888877
Q ss_pred cHHHHHHHH
Q 005987 371 DIRQAITSL 379 (666)
Q Consensus 371 DIR~AIn~L 379 (666)
-+-.-+..|
T Consensus 395 fVGADL~AL 403 (802)
T KOG0733|consen 395 FVGADLMAL 403 (802)
T ss_pred ccchhHHHH
Confidence 655544444
No 70
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=4.7e-14 Score=141.62 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=126.0
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
..|..+|.+.+|-.--.+......++.|.+.|- ..+..+.++||||||||||++++++|+..+..++. ...
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~----~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~--- 77 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFG----VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF--- 77 (214)
T ss_pred CCCCCCCCchhhEecccHHHHHHHHHHHHHccc----cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh---
Confidence 345666755555333345667777777776441 11212579999999999999999999987642221 000
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi 296 (666)
....+ +. ...+++|||++.... ..+...+..+.+.++ .
T Consensus 78 -------------------~~~~~------~~-----------~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~--~ 115 (214)
T PRK06620 78 -------------------FNEEI------LE-----------KYNAFIIEDIENWQE----PALLHIFNIINEKQK--Y 115 (214)
T ss_pred -------------------hchhH------Hh-----------cCCEEEEeccccchH----HHHHHHHHHHHhcCC--E
Confidence 00011 11 124899999996522 123344444445553 3
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
+++++++.+. . .. ++.|++++.. +..+.+++|+.+.+..+|++.+...++.+++++++.|+..+.||+|.++
T Consensus 116 ilits~~~p~-~----l~-l~~L~SRl~~--gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 116 LLLTSSDKSR-N----FT-LPDLSSRIKS--VLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred EEEEcCCCcc-c----cc-hHHHHHHHhC--CceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 4455544332 1 11 3567776653 6689999999999999999999989999999999999999999999999
Q ss_pred HHHHHHh
Q 005987 377 TSLQFSS 383 (666)
Q Consensus 377 n~LQf~~ 383 (666)
+.|+.+.
T Consensus 188 ~~l~~l~ 194 (214)
T PRK06620 188 EILENIN 194 (214)
T ss_pred HHHHHHH
Confidence 9998864
No 71
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.61 E-value=1.9e-14 Score=156.17 Aligned_cols=220 Identities=17% Similarity=0.223 Sum_probs=131.1
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---------CcEE
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---------ARLY 207 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---------~~vi 207 (666)
......|.|. +++++++.+++|..+|..+.. +..+ ..++|+||||||||++++.+++++. +.++
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~---~~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v 78 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILR---GSRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTV 78 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHc---CCCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEE
Confidence 4567889997 569999999999999998765 3222 5799999999999999999998763 5688
Q ss_pred EEcCCCchhh----hhhhhcccC-Cccc----cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHH
Q 005987 208 EWDTPTPTIW----QEYMHNCKT-GLEY----TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF 278 (666)
Q Consensus 208 E~nasd~~~~----~e~l~~~~~-g~~~----~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~ 278 (666)
++|+...... ...+..... |... .+..+.+..+.+.+... +++.||+|||+|.+....
T Consensus 79 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlvIDE~d~L~~~~-- 145 (365)
T TIGR02928 79 YVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-----------GDSLIIVLDEIDYLVGDD-- 145 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEECchhhhccCC--
Confidence 8887653221 111111100 1111 01112233333333211 246799999999885221
Q ss_pred HHHHHHHHHHH--hc-CCCceEEE-EecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH--h
Q 005987 279 ERLRQCLLLLV--RS-THIPTAVV-LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ--E 352 (666)
Q Consensus 279 ~~l~~~L~~l~--~~-~~~PiViI-it~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~--e 352 (666)
..+...|..+. .. ...++++| +++. .. ...+....+. ++.....|.|+|++.+++..+|+..+.. .
T Consensus 146 ~~~L~~l~~~~~~~~~~~~~v~lI~i~n~--~~---~~~~l~~~~~---s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~ 217 (365)
T TIGR02928 146 DDLLYQLSRARSNGDLDNAKVGVIGISND--LK---FRENLDPRVK---SSLCEEEIIFPPYDAEELRDILENRAEKAFY 217 (365)
T ss_pred cHHHHhHhccccccCCCCCeEEEEEEECC--cc---hHhhcCHHHh---ccCCcceeeeCCCCHHHHHHHHHHHHHhhcc
Confidence 11211122221 11 11233322 3321 11 1111111122 2222357999999999999999998863 2
Q ss_pred CCCCCHHHHHHHH---HHcCCcHHHHHHHHHHHhc
Q 005987 353 QYSLSTEQIDLVA---QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 353 ~i~v~~~~l~~Ia---~~s~GDIR~AIn~LQf~~~ 384 (666)
...+++++++.++ ..+.||+|.|++.|+.++.
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3347888776655 4557999999999987653
No 72
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.61 E-value=6.5e-15 Score=145.83 Aligned_cols=199 Identities=15% Similarity=0.239 Sum_probs=130.8
Q ss_pred ccccCCCCccccccCHHHHHH---HHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 140 AEKYKPRSLEELAVQRKKVEE---VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~e---l~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
.+-.+--+++|++||+...+. |..+|++--. =|...++.+|||||||+|||.+|++||++....++.++++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~--Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~--- 186 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPER--FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE--- 186 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHH--hcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH---
Confidence 355566799999999877665 4455543111 14555689999999999999999999999999999998864
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHH-------HHHHHHHHH
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER-------LRQCLLLLV 289 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~-------l~~~L~~l~ 289 (666)
..|-.+.....++.+..+++.+.. |+|++|||+|.+.-...++. ..++|+.-+
T Consensus 187 --------liGehVGdgar~Ihely~rA~~~a------------PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel 246 (368)
T COG1223 187 --------LIGEHVGDGARRIHELYERARKAA------------PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL 246 (368)
T ss_pred --------HHHHHhhhHHHHHHHHHHHHHhcC------------CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc
Confidence 123333344567888888887653 78999999997643222222 223333332
Q ss_pred hcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 290 RSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 290 ~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
+..+ .--|+.++.++.+...| ..+++. .-..|.|.-|+.++...+|..-++...+.++.. ++.++..+
T Consensus 247 Dgi~eneGVvtIaaTN~p~~LD------~aiRsR----FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t 315 (368)
T COG1223 247 DGIKENEGVVTIAATNRPELLD------PAIRSR----FEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKT 315 (368)
T ss_pred cCcccCCceEEEeecCChhhcC------HHHHhh----hhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHh
Confidence 2211 12234444444433222 123332 345799999999999999999998877776654 67777664
Q ss_pred ----CCcHHH
Q 005987 369 ----GGDIRQ 374 (666)
Q Consensus 369 ----~GDIR~ 374 (666)
+.||-.
T Consensus 316 ~g~SgRdike 325 (368)
T COG1223 316 KGMSGRDIKE 325 (368)
T ss_pred CCCCchhHHH
Confidence 446643
No 73
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-14 Score=149.15 Aligned_cols=213 Identities=18% Similarity=0.278 Sum_probs=141.6
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+=+++-.-.+++|+-|-++.+++|++.++--+..+ -|--|++.+|||||||||||.+|+++|++.+..++.+..
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 455666666789999999999999999987544321 144455899999999999999999999999999999988
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCL 285 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L 285 (666)
|. ..++++... ....+++++-|+. +.|.||||||+|.+.+. ..-+.++.+|
T Consensus 219 SE--lVqKYiGEG---------aRlVRelF~lAre------------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTm 275 (406)
T COG1222 219 SE--LVQKYIGEG---------ARLVRELFELARE------------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTM 275 (406)
T ss_pred HH--HHHHHhccc---------hHHHHHHHHHHhh------------cCCeEEEEechhhhhcccccCCCCchHHHHHHH
Confidence 75 344444331 1234555555543 35789999999965321 1123466666
Q ss_pred HHHHhcC------CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 286 LLLVRST------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 286 ~~l~~~~------~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
.+++..- ..--||.+|| ..+ .|.+.|-|++ -..|.|+.|+.....++|+-.+.+..+. +
T Consensus 276 leLL~qlDGFD~~~nvKVI~ATN--R~D----------~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~ 342 (406)
T COG1222 276 LELLNQLDGFDPRGNVKVIMATN--RPD----------ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-D 342 (406)
T ss_pred HHHHHhccCCCCCCCeEEEEecC--Ccc----------ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-c
Confidence 6666541 1223444444 222 2333333332 3479999999999999999888776543 1
Q ss_pred HHHHHHHHHH----cCCcHHHHHHHHHHHhcC
Q 005987 358 TEQIDLVAQA----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 358 ~~~l~~Ia~~----s~GDIR~AIn~LQf~~~~ 385 (666)
+--++.||.. |+-||++...-.-++|..
T Consensus 343 dvd~e~la~~~~g~sGAdlkaictEAGm~AiR 374 (406)
T COG1222 343 DVDLELLARLTEGFSGADLKAICTEAGMFAIR 374 (406)
T ss_pred CcCHHHHHHhcCCCchHHHHHHHHHHhHHHHH
Confidence 2234555555 445788777666666654
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=3.7e-14 Score=153.07 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=129.1
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEE-EEc----------C
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY-EWD----------T 211 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~vi-E~n----------a 211 (666)
.+|+++++|+||++.++.+.+.+.+ ++.+ +.+||+||+|+||+++|..+|+.+-++-- .-. .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------~rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~ 85 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------GRLH-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI 85 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC
Confidence 6899999999999999999998886 7776 78999999999999999999999854220 000 0
Q ss_pred CCchhhhhhh----hc----c-----cCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh
Q 005987 212 PTPTIWQEYM----HN----C-----KTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT 276 (666)
Q Consensus 212 sd~~~~~e~l----~~----~-----~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~ 276 (666)
...+.....+ +. . ..+.. -.-.+++++++...+... .....++|+||||++.++..
T Consensus 86 ~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~--------~~~~~~kVviIDead~m~~~- 156 (365)
T PRK07471 86 DPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT--------AAEGGWRVVIVDTADEMNAN- 156 (365)
T ss_pred CCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC--------cccCCCEEEEEechHhcCHH-
Confidence 0000001100 00 0 00100 011244555554443211 11234679999999988643
Q ss_pred HHHHHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCC
Q 005987 277 AFERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS 355 (666)
Q Consensus 277 ~~~~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~ 355 (666)
..++|++.++... .+++|+++... .+.+..++ .||..|.|.+++.+++.+.|.... ..
T Consensus 157 ----aanaLLK~LEepp~~~~~IL~t~~~--------~~llpti~-----SRc~~i~l~~l~~~~i~~~L~~~~----~~ 215 (365)
T PRK07471 157 ----AANALLKVLEEPPARSLFLLVSHAP--------ARLLPTIR-----SRCRKLRLRPLAPEDVIDALAAAG----PD 215 (365)
T ss_pred ----HHHHHHHHHhcCCCCeEEEEEECCc--------hhchHHhh-----ccceEEECCCCCHHHHHHHHHHhc----cc
Confidence 2234666666653 44566665521 12222232 269999999999999999988643 33
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHH
Q 005987 356 LSTEQIDLVAQASGGDIRQAITSLQ 380 (666)
Q Consensus 356 v~~~~l~~Ia~~s~GDIR~AIn~LQ 380 (666)
.++..+..++..++|+++.|++.++
T Consensus 216 ~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 216 LPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 4566668899999999999988764
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.59 E-value=6.4e-14 Score=153.73 Aligned_cols=218 Identities=19% Similarity=0.193 Sum_probs=132.7
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~na 211 (666)
.++...|.|. .++++++.+++|..++..+.. +..+ ..++|+||||+|||++++.+++++ ++.++.+|+
T Consensus 21 ~~l~~~~~P~---~l~~Re~e~~~l~~~l~~~~~---~~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 21 EVLEPDYVPE---NLPHREEQIEELAFALRPALR---GSRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred hhCCCCCcCC---CCCCHHHHHHHHHHHHHHHhC---CCCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 3466667774 469999999999999988764 2222 468999999999999999999987 577888988
Q ss_pred CCchhh----hhhhhcccCCccc----cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 212 PTPTIW----QEYMHNCKTGLEY----TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 212 sd~~~~----~e~l~~~~~g~~~----~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
...... ...+... .+... .+..+.+..+.+.+.. .+.+.||+|||+|.+........+..
T Consensus 94 ~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~viviDE~d~l~~~~~~~~l~~ 161 (394)
T PRK00411 94 QIDRTRYAIFSEIARQL-FGHPPPSSGLSFDELFDKIAEYLDE-----------RDRVLIVALDDINYLFEKEGNDVLYS 161 (394)
T ss_pred CcCCCHHHHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEECCHhHhhccCCchHHHH
Confidence 653321 1111111 11000 0111122222222221 12457999999998751111111222
Q ss_pred HHHHHHhc-CCCc--eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CCCCCH
Q 005987 284 CLLLLVRS-THIP--TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLST 358 (666)
Q Consensus 284 ~L~~l~~~-~~~P--iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i~v~~ 358 (666)
|..+... ...+ +|++.++... ....-..+++ +.+...|.|.|++.+++.++|+..+... ...+++
T Consensus 162 -l~~~~~~~~~~~v~vI~i~~~~~~------~~~l~~~~~s---~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~ 231 (394)
T PRK00411 162 -LLRAHEEYPGARIGVIGISSDLTF------LYILDPRVKS---VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDD 231 (394)
T ss_pred -HHHhhhccCCCeEEEEEEECCcch------hhhcCHHHHh---cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCH
Confidence 2222222 2223 3333332211 1111112232 2345689999999999999999988643 235789
Q ss_pred HHHHHHHHHc---CCcHHHHHHHHHHHh
Q 005987 359 EQIDLVAQAS---GGDIRQAITSLQFSS 383 (666)
Q Consensus 359 ~~l~~Ia~~s---~GDIR~AIn~LQf~~ 383 (666)
++++.|++.+ .||+|.|++.|..++
T Consensus 232 ~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 232 EVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999998887 899999999997654
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=99.58 E-value=1.4e-13 Score=140.28 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=122.6
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhc
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~ 223 (666)
+|++++... ......+++.|.... +....+.++|+||+|+|||++++++|+++ +..++.++..+. .
T Consensus 17 tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~------~-- 85 (234)
T PRK05642 17 TFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL------L-- 85 (234)
T ss_pred cccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH------H--
Confidence 566665322 133444454443211 12223679999999999999999999875 566666654220 0
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceEEEEec
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTE 302 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiViIit~ 302 (666)
.....+++....+ -+|+|||++...+... ...+..++..+.+.++ + +++.++
T Consensus 86 -----------~~~~~~~~~~~~~--------------d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~-~-ilits~ 138 (234)
T PRK05642 86 -----------DRGPELLDNLEQY--------------ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR-R-LLLAAS 138 (234)
T ss_pred -----------hhhHHHHHhhhhC--------------CEEEEechhhhcCChHHHHHHHHHHHHHHhcCC-E-EEEeCC
Confidence 0011233333211 2899999997754322 2234444444444443 3 344444
Q ss_pred CCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005987 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 303 ~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~ 382 (666)
.... . .....+.|++++.. +..+.+.+++.+++.++|+..+...++.+++++++.|++.+.||+|.+++.|+.+
T Consensus 139 ~~p~-~---l~~~~~~L~SRl~~--gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 139 KSPR-E---LPIKLPDLKSRLTL--ALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CCHH-H---cCccCccHHHHHhc--CeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3321 1 11123556776543 6789999999999999999888888999999999999999999999999988876
Q ss_pred h
Q 005987 383 S 383 (666)
Q Consensus 383 ~ 383 (666)
-
T Consensus 213 ~ 213 (234)
T PRK05642 213 D 213 (234)
T ss_pred H
Confidence 4
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=2.2e-13 Score=138.23 Aligned_cols=187 Identities=13% Similarity=0.161 Sum_probs=123.8
Q ss_pred CCCCccccc--cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhh
Q 005987 144 KPRSLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 144 ~P~sl~eLv--g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~ 218 (666)
+|.++++++ .+...+..++.|... . ...+.++|+||+|||||++++++++++ +..++.+++...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~------~-~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~---- 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG------P-VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP---- 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc------c-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh----
Confidence 456788877 356667777777652 1 122589999999999999999999986 556666654320
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEE
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAV 298 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiVi 298 (666)
...+ . +. ....+|+|||++.+.... ...+...+..... ...++++
T Consensus 82 -------------------~~~~---~-~~----------~~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~-~~~~~vl 126 (227)
T PRK08903 82 -------------------LLAF---D-FD----------PEAELYAVDDVERLDDAQ-QIALFNLFNRVRA-HGQGALL 126 (227)
T ss_pred -------------------HHHH---h-hc----------ccCCEEEEeChhhcCchH-HHHHHHHHHHHHH-cCCcEEE
Confidence 0000 0 10 113489999999875432 2333333333322 2233444
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
++++. .+. .......|.+.+. .+..|.++|++......+|.+++..+++.+++++++.|+..+.||+|.+++.
T Consensus 127 ~~~~~-~~~----~~~l~~~L~sr~~--~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~ 199 (227)
T PRK08903 127 VAGPA-APL----ALPLREDLRTRLG--WGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMAL 199 (227)
T ss_pred EeCCC-CHH----hCCCCHHHHHHHh--cCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 44432 111 1111233444443 2689999999999999999999999999999999999999999999999888
Q ss_pred HHHHh
Q 005987 379 LQFSS 383 (666)
Q Consensus 379 LQf~~ 383 (666)
|+.+.
T Consensus 200 l~~l~ 204 (227)
T PRK08903 200 LDALD 204 (227)
T ss_pred HHHHH
Confidence 88764
No 78
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.2e-13 Score=146.45 Aligned_cols=200 Identities=15% Similarity=0.219 Sum_probs=130.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc----------EEEEcCCCchh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----------LYEWDTPTPTI 216 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~----------viE~nasd~~~ 216 (666)
.|++|+||+..++.+...+.. ++.+ +.+||+||+|+||+++|.++|+.+.+. +...+.||...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------~rl~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------NRIA-PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------CCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 478999999999999999987 7776 799999999999999999999998433 22334444211
Q ss_pred hhhh-hhcc---------cCCc--c--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHH
Q 005987 217 WQEY-MHNC---------KTGL--E--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (666)
Q Consensus 217 ~~e~-l~~~---------~~g~--~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~ 282 (666)
.... .... ..|. . ..-.++.++++.+.+...+ .. ...+|+|||+++.++.. ..
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p-----~~---~~~kVvII~~ae~m~~~-----aa 141 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPP-----LE---APRKVVVIEDAETMNEA-----AA 141 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCc-----cc---CCceEEEEEchhhcCHH-----HH
Confidence 0000 0000 0000 0 0112344555444432211 11 23579999999988643 23
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 283 ~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
++|+++++.....++|++++ . ..+.++.|++ ||..|.|.+++.+++.++|.+.+..++.. ..+.
T Consensus 142 NaLLK~LEEPp~~~fILi~~-~-------~~~Ll~TI~S-----Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~ 205 (314)
T PRK07399 142 NALLKTLEEPGNGTLILIAP-S-------PESLLPTIVS-----RCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFP 205 (314)
T ss_pred HHHHHHHhCCCCCeEEEEEC-C-------hHhCcHHHHh-----hceEEecCCCCHHHHHHHHHHhhccccch---hHHH
Confidence 45666667665334455554 1 2345555554 69999999999999999999886544322 2357
Q ss_pred HHHHHcCCcHHHHHHHHHHH
Q 005987 363 LVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 363 ~Ia~~s~GDIR~AIn~LQf~ 382 (666)
.++..++||.|.|++.++..
T Consensus 206 ~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 206 ELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 88899999999999988754
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=1.8e-13 Score=138.41 Aligned_cols=189 Identities=12% Similarity=0.163 Sum_probs=122.4
Q ss_pred CCCccccc--cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhh
Q 005987 145 PRSLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQE 219 (666)
Q Consensus 145 P~sl~eLv--g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e 219 (666)
|.++++++ +++..++.++.|+..+ . .+.++|+||+|||||++|+.+++++ +..++.+++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~--~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~---- 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGK------G--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA---- 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcC------C--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH----
Confidence 45667766 3667888888887531 1 2589999999999999999999987 4556666543210
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-HHHHHHHHHHHHHhcCCCceEE
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTHIPTAV 298 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-~~~~l~~~L~~l~~~~~~PiVi 298 (666)
.....+++.. ....+|+|||++.+.... ..+.+...+..+.... .+ ++
T Consensus 79 ---------------~~~~~~~~~~--------------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~~-iI 127 (226)
T TIGR03420 79 ---------------QADPEVLEGL--------------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-GR-LL 127 (226)
T ss_pred ---------------HhHHHHHhhc--------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-Ce-EE
Confidence 0111222211 112489999999875431 1233434343333322 23 33
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
++++... ... ....+.|.+.+. .+..|.+.+++.+++..+|...+.+.++.+++++++.|+..++|++|.+.+.
T Consensus 128 its~~~~-~~~---~~~~~~L~~r~~--~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 128 IAGRAAP-AQL---PLRLPDLRTRLA--WGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred EECCCCh-HHC---CcccHHHHHHHh--cCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 3333221 100 011133444332 2578999999999999999999988899999999999999999999999988
Q ss_pred HHHH
Q 005987 379 LQFS 382 (666)
Q Consensus 379 LQf~ 382 (666)
|+-+
T Consensus 202 l~~~ 205 (226)
T TIGR03420 202 LDAL 205 (226)
T ss_pred HHHH
Confidence 7654
No 80
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=3.7e-13 Score=143.21 Aligned_cols=189 Identities=13% Similarity=0.193 Sum_probs=126.9
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccC
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~ 226 (666)
+|+|++||++.++.+..+++. ++.+ +.+||+||+|+|||++|+.+|+.+.+....-+.+|...+. ...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------~~~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~-----~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------NRFS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK-----PIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------CCCC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec-----ccc
Confidence 689999999999999999975 6666 7899999999999999999999885432211222211110 001
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCC
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKA 306 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~ 306 (666)
|. .-..++++++++.+...+ .. ...+|+|||+++.++.. ..++|+.+++....-+++|+...+
T Consensus 70 ~~--~i~v~~ir~~~~~~~~~p-----~~---~~~kv~iI~~ad~m~~~-----a~naLLK~LEepp~~t~~il~~~~-- 132 (313)
T PRK05564 70 KK--SIGVDDIRNIIEEVNKKP-----YE---GDKKVIIIYNSEKMTEQ-----AQNAFLKTIEEPPKGVFIILLCEN-- 132 (313)
T ss_pred CC--CCCHHHHHHHHHHHhcCc-----cc---CCceEEEEechhhcCHH-----HHHHHHHHhcCCCCCeEEEEEeCC--
Confidence 11 123456777666553222 11 24679999999987543 234567777765433333333221
Q ss_pred CCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 307 DSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 307 ~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
..+.++.+++ ||..+.|.+++..++.+.|.+... .++++.++.++..++|....|+..
T Consensus 133 -----~~~ll~TI~S-----Rc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 133 -----LEQILDTIKS-----RCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred -----hHhCcHHHHh-----hceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1244444554 599999999999999988876542 467888999999999988888644
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.52 E-value=8.5e-13 Score=138.33 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=121.5
Q ss_pred ccccCHHHHHHHHHHHHH---h-hcCCCCC---CCccEEEEECCCCchHHHHHHHHHHHc---CC----cEEEEcCCCch
Q 005987 150 ELAVQRKKVEEVRAWFEE---R-LGDSKDK---FSTNVLVITGQAGVGKTATVRQIASHL---GA----RLYEWDTPTPT 215 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~---~-~~~~~g~---~~~k~LLL~GPpG~GKTtla~~LAkel---g~----~viE~nasd~~ 215 (666)
+++|.+...++|++++.- . .....|. .+..++||+||||||||++|+++|+.+ |+ .+++++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~-- 101 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD-- 101 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH--
Confidence 688887777766665421 0 0000111 122469999999999999999999986 22 356666432
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch----hHHHHHHHHHHHHHhc
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----TAFERLRQCLLLLVRS 291 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~----~~~~~l~~~L~~l~~~ 291 (666)
....+ .|. .......+++++ .+.||||||++.+... ..-...++.|..+++.
T Consensus 102 l~~~~-----~g~----~~~~~~~~l~~a---------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 102 LVGQY-----IGH----TAPKTKEVLKKA---------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred HHHHH-----hcc----chHHHHHHHHHc---------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 10001 111 111223344432 1249999999976321 1112344566676766
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA---- 367 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~---- 367 (666)
....+++|++.+.. .. ...+..-+.+.+| ....|.|++++.+++.+++.+.+.+.+..++++.+..++..
T Consensus 158 ~~~~~~vI~ag~~~--~~---~~~~~~np~L~sR-~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~ 231 (287)
T CHL00181 158 QRDDLVVIFAGYKD--RM---DKFYESNPGLSSR-IANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKR 231 (287)
T ss_pred CCCCEEEEEeCCcH--HH---HHHHhcCHHHHHh-CCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 54445555554211 01 1111101222333 35689999999999999999999999999998877666653
Q ss_pred ----cCCcHHHHHHHHHHHhcC
Q 005987 368 ----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 368 ----s~GDIR~AIn~LQf~~~~ 385 (666)
.-|+.|.+.|.++.+...
T Consensus 232 ~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 232 MEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred CCCCCCccHHHHHHHHHHHHHH
Confidence 238889998988877653
No 82
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.51 E-value=3.7e-13 Score=149.98 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=128.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhc--CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLG--DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~--~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
+.++++|.|.+...+.+......+.. ...|-.+++.+||+||||||||.+|+++|++++..++.++.+. +.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~-------l~ 296 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK-------LF 296 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH-------hc
Confidence 46789999976665555443221110 0113334589999999999999999999999999999988643 11
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch-------hHHHHHHHHHHHHHhcCCCc
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-------TAFERLRQCLLLLVRSTHIP 295 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~-------~~~~~l~~~L~~l~~~~~~P 295 (666)
+..+......+++++..+... .|+||+|||+|.+... ....++...+...+.....|
T Consensus 297 ----~~~vGese~~l~~~f~~A~~~------------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 297 ----GGIVGESESRMRQMIRIAEAL------------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred ----ccccChHHHHHHHHHHHHHhc------------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 111122334566666655432 3689999999965321 12334444555556655566
Q ss_pred eEEEEecCCCCCCccchhhhhhHHHHHHhh-cC-eeEEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHH----c
Q 005987 296 TAVVLTECGKADSVDSTAQSFEELQSILVD-AG-ARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQIDLVAQA----S 368 (666)
Q Consensus 296 iViIit~~~~~~s~d~~~r~l~~L~s~L~r-~r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~-v~~~~l~~Ia~~----s 368 (666)
+++|+++ +... .|...+.| .| -..|.|..|+..+..++++..+.+.+.. ..+..++.|+.. +
T Consensus 361 V~vIaTT-N~~~----------~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATA-NNID----------LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEec-CChh----------hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 7665554 3222 12222222 12 3578999999999999999888775432 335557788877 4
Q ss_pred CCcHHHHHHHHHHHh
Q 005987 369 GGDIRQAITSLQFSS 383 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~ 383 (666)
++||+.+++..-+.+
T Consensus 430 GAdI~~lv~eA~~~A 444 (489)
T CHL00195 430 GAEIEQSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 568888876554444
No 83
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.51 E-value=9.2e-13 Score=138.05 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=125.7
Q ss_pred ccccCHHHHHHHHHHHHH---h-hcCCCCC---CCccEEEEECCCCchHHHHHHHHHHHcC---C----cEEEEcCCCch
Q 005987 150 ELAVQRKKVEEVRAWFEE---R-LGDSKDK---FSTNVLVITGQAGVGKTATVRQIASHLG---A----RLYEWDTPTPT 215 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~---~-~~~~~g~---~~~k~LLL~GPpG~GKTtla~~LAkelg---~----~viE~nasd~~ 215 (666)
+|+|.+...++|.++..- . .....|- .+..++||+||||||||++|+++|+.+. + .++++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l- 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL- 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH-
Confidence 577877776666554331 0 0000111 1234799999999999999999999872 2 4666665431
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch----hHHHHHHHHHHHHHhc
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----TAFERLRQCLLLLVRS 291 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~----~~~~~l~~~L~~l~~~ 291 (666)
... ..|. ....+..+++++. +.+|+|||++.+... ..-...++.|..+++.
T Consensus 102 -~~~-----~~g~----~~~~~~~~~~~a~---------------~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 102 -VGQ-----YIGH----TAPKTKEILKRAM---------------GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 156 (284)
T ss_pred -hHh-----hccc----chHHHHHHHHHcc---------------CcEEEEechhhhccCCCccchHHHHHHHHHHHHhc
Confidence 100 1111 1123344444431 248999999976311 1112344567777766
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA---- 367 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~---- 367 (666)
.+..+++|++.+.. ..+ .+..+...+.++....|.|++++.+++..++...+.+.+..+++++++.+...
T Consensus 157 ~~~~~~vI~a~~~~--~~~----~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~ 230 (284)
T TIGR02880 157 QRDDLVVILAGYKD--RMD----SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALR 230 (284)
T ss_pred CCCCEEEEEeCCcH--HHH----HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHh
Confidence 55445555554321 011 11112222333234689999999999999999999999889999999888775
Q ss_pred ----cCCcHHHHHHHHHHHhcC
Q 005987 368 ----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 368 ----s~GDIR~AIn~LQf~~~~ 385 (666)
-.|++|.+.|.++.+...
T Consensus 231 ~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 231 RTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CCCCCCChHHHHHHHHHHHHHH
Confidence 349999999999988764
No 84
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.8e-13 Score=142.64 Aligned_cols=213 Identities=18% Similarity=0.275 Sum_probs=139.2
Q ss_pred cccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEEEcCCC
Q 005987 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTPT 213 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~nasd 213 (666)
.-+-|-|.. |.+++..++.+...|..++. |..| ..++++||||||||++++.+++++. ..++++|+..
T Consensus 10 l~~~~iP~~---l~~Re~ei~~l~~~l~~~~~---~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 10 LLEDYIPEE---LPHREEEINQLASFLAPALR---GERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE 82 (366)
T ss_pred cCCCCCccc---ccccHHHHHHHHHHHHHHhc---CCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee
Confidence 445567766 79999999999999998886 4444 4599999999999999999999983 3388898875
Q ss_pred chhhh----hhhh----cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHH
Q 005987 214 PTIWQ----EYMH----NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (666)
Q Consensus 214 ~~~~~----e~l~----~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L 285 (666)
..... +.+. -...|... .+.+..+.+..... +...||++||+|.+..... +.|
T Consensus 83 ~~t~~~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~~~~~-----------~~~~IvvLDEid~L~~~~~-----~~L 143 (366)
T COG1474 83 LRTPYQVLSKILNKLGKVPLTGDSS---LEILKRLYDNLSKK-----------GKTVIVILDEVDALVDKDG-----EVL 143 (366)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCch---HHHHHHHHHHHHhc-----------CCeEEEEEcchhhhccccc-----hHH
Confidence 43221 1111 12233322 22333333333221 2457999999999866532 446
Q ss_pred HHHHhcCCCc---e-EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CCCCCHH
Q 005987 286 LLLVRSTHIP---T-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLSTE 359 (666)
Q Consensus 286 ~~l~~~~~~P---i-ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i~v~~~ 359 (666)
..++.....+ + ++.+++ . .+......+.+++.+ +...|.|+|++.+++..+|...+... .-.++++
T Consensus 144 Y~L~r~~~~~~~~v~vi~i~n--~---~~~~~~ld~rv~s~l---~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~ 215 (366)
T COG1474 144 YSLLRAPGENKVKVSIIAVSN--D---DKFLDYLDPRVKSSL---GPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD 215 (366)
T ss_pred HHHHhhccccceeEEEEEEec--c---HHHHHHhhhhhhhcc---CcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc
Confidence 6665544433 2 222222 1 111112223344443 45569999999999999999988742 3457888
Q ss_pred HHHHHHH---HcCCcHHHHHHHHHHHhcC
Q 005987 360 QIDLVAQ---ASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 360 ~l~~Ia~---~s~GDIR~AIn~LQf~~~~ 385 (666)
+++.++. ..+||.|.||..|..++..
T Consensus 216 vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 216 VLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 8887774 4668999999999888753
No 85
>PRK09087 hypothetical protein; Validated
Probab=99.51 E-value=6.8e-13 Score=134.39 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=116.8
Q ss_pred Ccccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhc
Q 005987 147 SLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 147 sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~ 223 (666)
+++++++ +...+. +++.|. +. +.+.++|+||+|||||++++++|+..+..++... +
T Consensus 19 ~~~~Fi~~~~N~~a~~----~l~~~~----~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~---------- 77 (226)
T PRK09087 19 GRDDLLVTESNRAAVS----LVDHWP----NW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--E---------- 77 (226)
T ss_pred ChhceeecCchHHHHH----HHHhcc----cC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--H----------
Confidence 6777775 444444 444432 11 1246999999999999999999998765533211 0
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecC
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~ 303 (666)
--..++..+. ..+|+|||++.+... ...+...+..+.+.+ .+ ++++++.
T Consensus 78 ------------~~~~~~~~~~---------------~~~l~iDDi~~~~~~--~~~lf~l~n~~~~~g-~~-ilits~~ 126 (226)
T PRK09087 78 ------------IGSDAANAAA---------------EGPVLIEDIDAGGFD--ETGLFHLINSVRQAG-TS-LLMTSRL 126 (226)
T ss_pred ------------cchHHHHhhh---------------cCeEEEECCCCCCCC--HHHHHHHHHHHHhCC-Ce-EEEECCC
Confidence 0011222111 127899999976432 133545455555544 33 3444443
Q ss_pred CCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005987 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (666)
Q Consensus 304 ~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQ 380 (666)
.. ..+ ...++.|++++.. +..+.+.+|+.+.+.++|++.+...++.++++++++|+..+.||+|.++..|.
T Consensus 127 ~p-~~~---~~~~~dL~SRl~~--gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 127 WP-SSW---NVKLPDLKSRLKA--ATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred Ch-HHh---ccccccHHHHHhC--CceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22 111 1224567877664 78999999999999999999999999999999999999999999999986443
No 86
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.3e-13 Score=148.44 Aligned_cols=247 Identities=17% Similarity=0.284 Sum_probs=152.1
Q ss_pred cccCCCCCc---hhhhchhhhhhccccCCccccccCCCCCCCCccCCCCCCccccccCCCCccccccCHHHHHHHHHHHH
Q 005987 90 WTNKNKPCS---LEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFE 166 (666)
Q Consensus 90 w~~~~~~~s---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~ 166 (666)
|.+.+.||| ........+||...+. .| +|.++.....-..+..| +|+-+.++...++...+.
T Consensus 464 i~~~~d~~S~E~~~~L~i~~eDF~~Al~--~i----QPSakREGF~tVPdVtW---------~dIGaL~~vR~eL~~aI~ 528 (802)
T KOG0733|consen 464 ILNNPDPLSKELLEGLSIKFEDFEEALS--KI----QPSAKREGFATVPDVTW---------DDIGALEEVRLELNMAIL 528 (802)
T ss_pred HHhCCCCcChHHhccceecHHHHHHHHH--hc----CcchhcccceecCCCCh---------hhcccHHHHHHHHHHHHh
Confidence 556666777 3344456667776665 44 44443333222233444 667777777777776665
Q ss_pred HhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHH
Q 005987 167 ERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFV 241 (666)
Q Consensus 167 ~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl 241 (666)
.-.+.. -|-.++..+||+||||||||.+|+++|+|.|.+++.+..|. .+..++ ......+++++
T Consensus 529 ~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE--LlNkYV---------GESErAVR~vF 597 (802)
T KOG0733|consen 529 APIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE--LLNKYV---------GESERAVRQVF 597 (802)
T ss_pred hhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHH--HHHHHh---------hhHHHHHHHHH
Confidence 322211 13333468999999999999999999999999999998875 222222 23345677888
Q ss_pred HHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHHhcC-CCceEEEEecCCCCCCccchhh
Q 005987 242 ERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRST-HIPTAVVLTECGKADSVDSTAQ 314 (666)
Q Consensus 242 ~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~~~~-~~PiViIit~~~~~~s~d~~~r 314 (666)
.+++.. .|+|||+||+|.+..+ ..-.++.+.|+.-++.. .+--|+++++++.++..|.
T Consensus 598 qRAR~s------------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp--- 662 (802)
T KOG0733|consen 598 QRARAS------------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP--- 662 (802)
T ss_pred HHhhcC------------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccch---
Confidence 888532 4799999999976432 22334544444333332 2334677777777765442
Q ss_pred hhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHH------cCCcHHHHHHHHHHHhc
Q 005987 315 SFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QIDLVAQA------SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 315 ~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~-~l~~Ia~~------s~GDIR~AIn~LQf~~~ 384 (666)
++| |+ | -..+....|+.++...+|+.+.+..+..++++ -++.||.. ++.|+-..+.---++++
T Consensus 663 ------AiL-RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 663 ------AIL-RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred ------hhc-CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 122 22 2 23567778899999999999988655555543 36667654 45677665554444443
No 87
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=8.5e-13 Score=147.34 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=122.5
Q ss_pred Ccccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhh
Q 005987 147 SLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 147 sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~ 218 (666)
+|+++++ +......++.|.+. ++.. .+.++||||||||||++++++|+++ +..++.+++.+. ..
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~-----~~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~ 191 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAEN-----PGKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TN 191 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhC-----cCcc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HH
Confidence 5666553 33345555555442 1222 2579999999999999999999998 566777775431 11
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceE
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiV 297 (666)
+...... .. ....|.+... ...+|+|||++.+.+... .+.+...+..+.+.++ ++
T Consensus 192 ~~~~~~~-----~~---~~~~~~~~~~--------------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~-~i- 247 (450)
T PRK00149 192 DFVNALR-----NN---TMEEFKEKYR--------------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGK-QI- 247 (450)
T ss_pred HHHHHHH-----cC---cHHHHHHHHh--------------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC-cE-
Confidence 1111100 00 1122333222 124899999998765432 2334444555555543 43
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
+++++.... .. ....+.|.+++. .+..+.|.+|+.+.+.++|++.+...++.+++++++.|+..+.||+|.++.
T Consensus 248 iits~~~p~-~l---~~l~~~l~SRl~--~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 248 VLTSDRPPK-EL---PGLEERLRSRFE--WGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred EEECCCCHH-HH---HHHHHHHHhHhc--CCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHH
Confidence 445543211 00 111233455443 257899999999999999999999999999999999999999999998554
Q ss_pred HHHH
Q 005987 378 SLQF 381 (666)
Q Consensus 378 ~LQf 381 (666)
.|..
T Consensus 322 ~l~~ 325 (450)
T PRK00149 322 ALNR 325 (450)
T ss_pred HHHH
Confidence 4443
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.50 E-value=1.5e-12 Score=131.29 Aligned_cols=198 Identities=23% Similarity=0.345 Sum_probs=120.3
Q ss_pred Ccccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhh
Q 005987 147 SLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 147 sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~ 218 (666)
||+.++. ++.....+....+. ++. ..+.++||||+|+|||++++++++++ +..++.+++.+ ...
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~-----~~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~--f~~ 77 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAEN-----PGE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE--FIR 77 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHS-----TTT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH--HHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhc-----CCC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH--HHH
Confidence 5666653 44445555544433 122 22579999999999999999999886 56677776532 111
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceE
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiV 297 (666)
+....... ....+|.++... .-+|+|||++.+.+... ...+...+..+.+.++ + +
T Consensus 78 ~~~~~~~~--------~~~~~~~~~~~~--------------~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k-~-l 133 (219)
T PF00308_consen 78 EFADALRD--------GEIEEFKDRLRS--------------ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK-Q-L 133 (219)
T ss_dssp HHHHHHHT--------TSHHHHHHHHCT--------------SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS-E-E
T ss_pred HHHHHHHc--------ccchhhhhhhhc--------------CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC-e-E
Confidence 11111000 112334443322 23999999998876532 2334455555555543 3 4
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
+++++..+.. .....++|.+++.. +..+.+.+|+.+...++|++.+...++.+++++++.|+....+|+|....
T Consensus 134 i~ts~~~P~~----l~~~~~~L~SRl~~--Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 134 ILTSDRPPSE----LSGLLPDLRSRLSW--GLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp EEEESS-TTT----TTTS-HHHHHHHHC--SEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHH
T ss_pred EEEeCCCCcc----ccccChhhhhhHhh--cchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHH
Confidence 5556544322 12234567888864 78899999999999999999999999999999999999999999998766
Q ss_pred HHHHH
Q 005987 378 SLQFS 382 (666)
Q Consensus 378 ~LQf~ 382 (666)
.|.-+
T Consensus 208 ~l~~l 212 (219)
T PF00308_consen 208 ALNRL 212 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.50 E-value=2.7e-13 Score=159.55 Aligned_cols=211 Identities=20% Similarity=0.246 Sum_probs=145.2
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
...+++++.+|..+++++|+++.++.+...|... . .+.+||+||||||||++|+.+|+.+ +.
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~------~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~ 239 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCRR------K--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNA 239 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC------C--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 4567999999999999999999999988877642 1 2478999999999999999999998 56
Q ss_pred cEEEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh----HHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----AFE 279 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~----~~~ 279 (666)
.+++++... ...|..|. .....++.+++.+... .+.||+|||++.+.+.. .-.
T Consensus 240 ~~~~~~~~~----------l~a~~~~~g~~e~~l~~i~~~~~~~------------~~~ILfiDEih~l~~~g~~~~~~~ 297 (731)
T TIGR02639 240 KIYSLDMGS----------LLAGTKYRGDFEERLKAVVSEIEKE------------PNAILFIDEIHTIVGAGATSGGSM 297 (731)
T ss_pred eEEEecHHH----------HhhhccccchHHHHHHHHHHHHhcc------------CCeEEEEecHHHHhccCCCCCccH
Confidence 666665322 11222221 2234566667666432 25799999999764321 001
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCC
Q 005987 280 RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYS 355 (666)
Q Consensus 280 ~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~ 355 (666)
...+.|...+..+. +.+| +.++.. .+.+.++ +...|.| |+..|.+.+|+.+++.++|+.+... .++.
T Consensus 298 ~~~~~L~~~l~~g~--i~~I-gaTt~~----e~~~~~~-~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~ 368 (731)
T TIGR02639 298 DASNLLKPALSSGK--LRCI-GSTTYE----EYKNHFE-KDRALSR-RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVK 368 (731)
T ss_pred HHHHHHHHHHhCCC--eEEE-EecCHH----HHHHHhh-hhHHHHH-hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcc
Confidence 23455667766653 3333 333321 1223333 3444444 5889999999999999999988765 3577
Q ss_pred CCHHHHHHHHHHcCC---c---HHHHHHHHHHHhc
Q 005987 356 LSTEQIDLVAQASGG---D---IRQAITSLQFSSL 384 (666)
Q Consensus 356 v~~~~l~~Ia~~s~G---D---IR~AIn~LQf~~~ 384 (666)
++++++..++..++. | .++||..|.-+|.
T Consensus 369 i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 369 YSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred cCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 999999999998864 3 6788988876654
No 90
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.50 E-value=2.4e-13 Score=149.30 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=130.5
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..++++++.+.+++||.|.+..++++++++.-.+... -|-.+++.+||+||||||||++|+++|++++..++.+.
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 4578999999999999999999999999987443321 13334478999999999999999999999999999887
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQC 284 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~ 284 (666)
.++. ...+ .| .....+..++..+... .+.||+|||+|.+.... .-...+..
T Consensus 250 ~seL--~~k~-----~G----e~~~~vr~lF~~A~~~------------~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ 306 (438)
T PTZ00361 250 GSEL--IQKY-----LG----DGPKLVRELFRVAEEN------------APSIVFIDEIDAIGTKRYDATSGGEKEIQRT 306 (438)
T ss_pred cchh--hhhh-----cc----hHHHHHHHHHHHHHhC------------CCcEEeHHHHHHHhccCCCCCCcccHHHHHH
Confidence 6541 1111 11 1122344555544321 36799999998653210 00111122
Q ss_pred HHHHH---hc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 285 LLLLV---RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 285 L~~l~---~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
+..++ +. ....+++|+++ +. +..+...+.|+ .-..|.|.+|+..+...+|+..+.+..+.-
T Consensus 307 ll~LL~~Ldg~~~~~~V~VI~AT-Nr----------~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~- 374 (438)
T PTZ00361 307 MLELLNQLDGFDSRGDVKVIMAT-NR----------IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE- 374 (438)
T ss_pred HHHHHHHHhhhcccCCeEEEEec-CC----------hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-
Confidence 22222 11 11223333332 21 12234433332 245799999999999999998776554321
Q ss_pred HHHHHHHHH----HcCCcHHHHHHHHHHHhc
Q 005987 358 TEQIDLVAQ----ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~----~s~GDIR~AIn~LQf~~~ 384 (666)
+..+..++. .++.||+.++...-+.|.
T Consensus 375 dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 375 DVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred CcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 123445553 466788877766555554
No 91
>CHL00176 ftsH cell division protein; Validated
Probab=99.49 E-value=8.2e-13 Score=151.62 Aligned_cols=205 Identities=15% Similarity=0.202 Sum_probs=128.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCC----CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~----g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
..+++|++|.++..+++...+.-...... |...++.+||+||||||||++|+++|.+++..++.+++++.. +
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~---~- 254 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV---E- 254 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH---H-
Confidence 36899999998888888776643211111 223347899999999999999999999999999988876411 0
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHHHHHHHHhc
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRS 291 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~~L~~l~~~ 291 (666)
...|. ....++.++.++... .|+||+|||+|.+... .........|+..++.
T Consensus 255 ---~~~g~----~~~~vr~lF~~A~~~------------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 255 ---MFVGV----GAARVRDLFKKAKEN------------SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred ---Hhhhh----hHHHHHHHHHHHhcC------------CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 01111 123456666666432 3679999999976311 1112222222222221
Q ss_pred --CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 292 --THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 292 --~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
....+++|++ ++..+ .+...+.|+ ....|.|.+|+.++...+|+..+....+ .++..+..|+..
T Consensus 316 ~~~~~~ViVIaa-TN~~~----------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~ 383 (638)
T CHL00176 316 FKGNKGVIVIAA-TNRVD----------ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARR 383 (638)
T ss_pred ccCCCCeeEEEe-cCchH----------hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhc
Confidence 1223444433 33221 233333332 2367999999999999999998877432 346678899988
Q ss_pred cCC----cHHHHHHHHHHHhc
Q 005987 368 SGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 368 s~G----DIR~AIn~LQf~~~ 384 (666)
+.| ||+.++|..-+.+.
T Consensus 384 t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 384 TPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 777 99999987655443
No 92
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.49 E-value=3.4e-13 Score=152.26 Aligned_cols=211 Identities=17% Similarity=0.253 Sum_probs=131.0
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
..+.+.....+++|++|.+...+++++++.- +... .|..+++.+||+||||||||++|+++|++++..++.++.
T Consensus 43 ~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 43 KLLNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred ccccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 3455666778999999999988888877662 2210 123334789999999999999999999999999998886
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~ 282 (666)
++.. . ...| .....++.+++.+... .|.||+|||+|.+... .......
T Consensus 122 ~~~~---~----~~~g----~~~~~l~~~f~~a~~~------------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~ 178 (495)
T TIGR01241 122 SDFV---E----MFVG----VGASRVRDLFEQAKKN------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTL 178 (495)
T ss_pred HHHH---H----HHhc----ccHHHHHHHHHHHHhc------------CCCEEEEechhhhhhccccCcCCccHHHHHHH
Confidence 5411 0 0111 1233566666666432 3579999999976321 1111222
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
..|+..++. ....+++| ..++.++. |...+.|+ .-..|.|..|+.++..++|+..+...... ++
T Consensus 179 ~~lL~~~d~~~~~~~v~vI-~aTn~~~~----------ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~ 246 (495)
T TIGR01241 179 NQLLVEMDGFGTNTGVIVI-AATNRPDV----------LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD 246 (495)
T ss_pred HHHHhhhccccCCCCeEEE-EecCChhh----------cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc
Confidence 223322221 11224333 33333221 22233221 23579999999999999999887665443 34
Q ss_pred HHHHHHHHH----cCCcHHHHHHHHHHHh
Q 005987 359 EQIDLVAQA----SGGDIRQAITSLQFSS 383 (666)
Q Consensus 359 ~~l~~Ia~~----s~GDIR~AIn~LQf~~ 383 (666)
..+..|+.. +++||+.+++..-+.+
T Consensus 247 ~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 247 VDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred hhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 456777776 4578998888654443
No 93
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=1.1e-12 Score=150.90 Aligned_cols=224 Identities=16% Similarity=0.171 Sum_probs=131.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~ 205 (666)
..+..+.|||+++++++|+...++.+..-+.. +. + ..++|+|||||||||+|+++++.. +..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------~~-~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~ 212 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------PF-P-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAP 212 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------CC-C-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCC
Confidence 35577889999999999999999987655532 22 2 479999999999999999998765 235
Q ss_pred EEEEcCCCchhhh-hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHH
Q 005987 206 LYEWDTPTPTIWQ-EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (666)
Q Consensus 206 viE~nasd~~~~~-e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~ 284 (666)
++++++.... +. ..+.+...|.............+....-.......... -...+|||||++.++... ...+...
T Consensus 213 fv~i~~~~l~-~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~--asgGvL~LDEi~~Ld~~~-Q~~Ll~~ 288 (615)
T TIGR02903 213 FVEVDGTTLR-WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTD--AHGGVLFIDEIGELDPLL-QNKLLKV 288 (615)
T ss_pred eEEEechhcc-CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhh--cCCCeEEEeccccCCHHH-HHHHHHH
Confidence 6777765421 00 00000001100000000001111110000000000000 112499999999886532 2333333
Q ss_pred HHHH-----------------------Hhc-CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHH
Q 005987 285 LLLL-----------------------VRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGS 340 (666)
Q Consensus 285 L~~l-----------------------~~~-~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~ 340 (666)
|..- +.. .+..++++++++.... ...+.|++ ||..+.|.|++.++
T Consensus 289 Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~------~l~~aLrS-----R~~~i~~~pls~ed 357 (615)
T TIGR02903 289 LEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE------EINPALRS-----RCAEVFFEPLTPED 357 (615)
T ss_pred HhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc------ccCHHHHh-----ceeEEEeCCCCHHH
Confidence 3210 000 1112444444332211 11122332 58899999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005987 341 IKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 341 i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
+..++++++.+.++.+++++++.|+..+ ++.|.++|.|+-++
T Consensus 358 i~~Il~~~a~~~~v~ls~eal~~L~~ys-~~gRraln~L~~~~ 399 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAGVEELIARYT-IEGRKAVNILADVY 399 (615)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHCC-CcHHHHHHHHHHHH
Confidence 9999999999888889999999999876 58899999998764
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.48 E-value=1.7e-12 Score=127.81 Aligned_cols=169 Identities=17% Similarity=0.236 Sum_probs=102.2
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcE-EEEcCCCchhhhhhhhc-ccCCcc------ccchhHHHHHHHHHHH
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARL-YEWDTPTPTIWQEYMHN-CKTGLE------YTSKLDEFENFVERIR 245 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~v-iE~nasd~~~~~e~l~~-~~~g~~------~~s~~~~f~~fl~~a~ 245 (666)
++.+ +.+||+||+|+|||++++.+|+.+...- ........+.....+.. ...+.. -....+.++++++.+.
T Consensus 11 ~~~~-~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 89 (188)
T TIGR00678 11 GRLA-HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLS 89 (188)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHc
Confidence 5555 6899999999999999999999985430 00000000000000000 000000 0123456766676664
Q ss_pred hhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHh
Q 005987 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILV 324 (666)
Q Consensus 246 ~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~ 324 (666)
..+. . ..++||||||++.+... .++.|+.+++... ..+++++++ . ..+.++.+++
T Consensus 90 ~~~~-----~---~~~kviiide~~~l~~~-----~~~~Ll~~le~~~~~~~~il~~~-~-------~~~l~~~i~s--- 145 (188)
T TIGR00678 90 RTPQ-----E---SGRRVVIIEDAERMNEA-----AANALLKTLEEPPPNTLFILITP-S-------PEKLLPTIRS--- 145 (188)
T ss_pred cCcc-----c---CCeEEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEEEC-C-------hHhChHHHHh---
Confidence 3321 1 24579999999988643 2234556666533 223334433 1 1223333333
Q ss_pred hcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Q 005987 325 DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQA 375 (666)
Q Consensus 325 r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~A 375 (666)
||..+.|.|++..++.++|.+. + +++++++.|+..++||+|.|
T Consensus 146 --r~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 146 --RCQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred --hcEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 5899999999999999998875 4 78999999999999999975
No 95
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.48 E-value=2.2e-12 Score=142.16 Aligned_cols=173 Identities=22% Similarity=0.299 Sum_probs=110.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s 253 (666)
+.++||||+|+|||++++++++++ +..++.+++.+. ..+....... .. +..|.+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~~~-----~~---~~~~~~~~~~------- 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNALRN-----NK---MEEFKEKYRS------- 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHHHc-----CC---HHHHHHHHHh-------
Confidence 579999999999999999999987 567777775431 1111111000 01 2223332221
Q ss_pred CCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEE
Q 005987 254 IPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (666)
Q Consensus 254 ~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~ 332 (666)
..+|+|||++.+.+... ...+...+..+.+.+ .++ +++++.... . .....+.|.+++. .+..+.
T Consensus 200 -------~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~i-iits~~~p~-~---l~~l~~~l~SRl~--~g~~v~ 264 (405)
T TIGR00362 200 -------VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQI-VLTSDRPPK-E---LPGLEERLRSRFE--WGLVVD 264 (405)
T ss_pred -------CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCE-EEecCCCHH-H---Hhhhhhhhhhhcc--CCeEEE
Confidence 23899999998765422 223444455554444 344 444442211 0 1111233444443 256899
Q ss_pred eCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHHHHHh
Q 005987 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ---AITSLQFSS 383 (666)
Q Consensus 333 F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~---AIn~LQf~~ 383 (666)
|.+|+.+.+..+|+..+...++.+++++++.|++...||+|. ||+.|..++
T Consensus 265 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYA 318 (405)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 555555544
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.4e-12 Score=144.82 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=127.8
Q ss_pred CCCccccccCHH---HHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchh
Q 005987 145 PRSLEELAVQRK---KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTI 216 (666)
Q Consensus 145 P~sl~eLvg~~k---~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~ 216 (666)
+.+|+.++..+. ....+..+.+. ++.. .+.++||||+|+|||++++++++++ +..++.+++.+ .
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~-----~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~--f 182 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN-----PGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE--F 182 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC-----cCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH--H
Confidence 457888775432 33334444321 1322 2579999999999999999999965 46777776543 1
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-HHHHHHHHHHHHHhcCCCc
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTHIP 295 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-~~~~l~~~L~~l~~~~~~P 295 (666)
..+...... ...+.+..|..+. . ...+|||||++.+.+.. ..+.+...+..+...++ +
T Consensus 183 ~~~~~~~l~------~~~~~~~~~~~~~---~-----------~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k-~ 241 (450)
T PRK14087 183 ARKAVDILQ------KTHKEIEQFKNEI---C-----------QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK-Q 241 (450)
T ss_pred HHHHHHHHH------HhhhHHHHHHHHh---c-----------cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC-c
Confidence 111111000 0001223333322 1 12489999999876542 23444455555555554 3
Q ss_pred eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHH
Q 005987 296 TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQY--SLSTEQIDLVAQASGGDIR 373 (666)
Q Consensus 296 iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i--~v~~~~l~~Ia~~s~GDIR 373 (666)
++++++..... .....+.|.+++.. ...+.+.+|+.+++.++|++.+...++ .+++++++.|+..++||+|
T Consensus 242 -iIltsd~~P~~----l~~l~~rL~SR~~~--Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R 314 (450)
T PRK14087 242 -LFFSSDKSPEL----LNGFDNRLITRFNM--GLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVR 314 (450)
T ss_pred -EEEECCCCHHH----HhhccHHHHHHHhC--CceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHH
Confidence 45555533211 11122456666553 678999999999999999999998875 6999999999999999999
Q ss_pred HHHHHHHHH
Q 005987 374 QAITSLQFS 382 (666)
Q Consensus 374 ~AIn~LQf~ 382 (666)
.+.+.|.-+
T Consensus 315 ~L~gaL~~l 323 (450)
T PRK14087 315 KIKGSVSRL 323 (450)
T ss_pred HHHHHHHHH
Confidence 999888654
No 97
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.7e-13 Score=147.33 Aligned_cols=209 Identities=16% Similarity=0.271 Sum_probs=140.2
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 142 KY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
.-...+++|+-|.+...++++..++--.+.+ =|-.|++.+|||||||||||++|+++|++.+.+++.+..+. .
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE--L 504 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE--L 504 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH--H
Confidence 3445678999999999999887766222110 14344589999999999999999999999999999988775 2
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHHh
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVR 290 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~~ 290 (666)
+..+ +......+++++.+++.. .|.||++||+|.+... ....++...|+.-++
T Consensus 505 ~sk~---------vGeSEr~ir~iF~kAR~~------------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 505 FSKY---------VGESERAIREVFRKARQV------------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD 563 (693)
T ss_pred HHHh---------cCchHHHHHHHHHHHhhc------------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc
Confidence 2222 233445677788887644 3689999999976332 123455544444443
Q ss_pred cCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHH
Q 005987 291 STH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QIDLVAQ 366 (666)
Q Consensus 291 ~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~-~l~~Ia~ 366 (666)
... .--|+|++.+|.++. |...|.||+ -..|.+++|+.+....+|+..+++. .++++ .++.||+
T Consensus 564 G~e~~k~V~ViAATNRpd~----------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~ 631 (693)
T KOG0730|consen 564 GLEALKNVLVIAATNRPDM----------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQ 631 (693)
T ss_pred cccccCcEEEEeccCChhh----------cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHH
Confidence 221 224667777776553 333333322 4578999999999999998776654 44444 6788887
Q ss_pred H----cCCcHHHHHHHHHHHhcC
Q 005987 367 A----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 367 ~----s~GDIR~AIn~LQf~~~~ 385 (666)
. |+-||+...+---..|..
T Consensus 632 ~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 632 ATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred HhccCChHHHHHHHHHHHHHHHH
Confidence 5 566888777766555553
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.47 E-value=9.6e-13 Score=143.58 Aligned_cols=210 Identities=17% Similarity=0.211 Sum_probs=128.1
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
++....-+++||.|.+..+++|++++.-.+... .|-.+++.+||+||||||||++|+++|++++..++.+..+..
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 344455789999999999999999887444321 133445899999999999999999999999999888865431
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l 288 (666)
...++ | .....+++++..+.. ..|.||+|||+|.+.... .-...+..+..+
T Consensus 216 --~~k~~-----g----e~~~~lr~lf~~A~~------------~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~L 272 (398)
T PTZ00454 216 --VQKYL-----G----EGPRMVRDVFRLARE------------NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLEL 272 (398)
T ss_pred --HHHhc-----c----hhHHHHHHHHHHHHh------------cCCeEEEEECHhhhccccccccCCccHHHHHHHHHH
Confidence 11111 1 112234555555432 246799999999753210 001122222222
Q ss_pred H---hc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 289 V---RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 289 ~---~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
+ +. ....+++|+++ +..+ .+.+.+.|+ .-..|.|++|+..+...+++.++...++. .+-.+
T Consensus 273 L~~ld~~~~~~~v~VI~aT-N~~d----------~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~ 340 (398)
T PTZ00454 273 LNQMDGFDQTTNVKVIMAT-NRAD----------TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDL 340 (398)
T ss_pred HHHhhccCCCCCEEEEEec-CCch----------hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCH
Confidence 2 21 12234444332 2222 222222221 23569999999999999999887765543 22345
Q ss_pred HHHHHH----cCCcHHHHHHHHHHHhc
Q 005987 362 DLVAQA----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~----s~GDIR~AIn~LQf~~~ 384 (666)
..++.. ++.||...++...+.|.
T Consensus 341 ~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 341 EDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 666665 45688887777666665
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.47 E-value=5.9e-13 Score=158.02 Aligned_cols=212 Identities=16% Similarity=0.180 Sum_probs=142.6
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC----------C
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG----------A 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg----------~ 204 (666)
.....+++.+|.++++++|+++.++.+..+|.+. . .+.+||+||||||||++|+.||+.+. .
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~------~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~ 244 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRR------R--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNV 244 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcC------C--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCC
Confidence 3457888899999999999999999998888652 2 14789999999999999999999873 2
Q ss_pred cEEEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---HHHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFER 280 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---~~~~ 280 (666)
.++.++.. ....|..|. .....++.+++.+...+ .+.||+|||++.+.+.. ....
T Consensus 245 ~i~~l~l~----------~l~ag~~~~ge~e~~lk~ii~e~~~~~-----------~~~ILfIDEih~l~~~g~~~~~~d 303 (852)
T TIGR03345 245 RLLSLDLG----------LLQAGASVKGEFENRLKSVIDEVKASP-----------QPIILFIDEAHTLIGAGGQAGQGD 303 (852)
T ss_pred eEEEeehh----------hhhcccccchHHHHHHHHHHHHHHhcC-----------CCeEEEEeChHHhccCCCcccccc
Confidence 33333221 111232332 23356677777764322 35799999999875311 1112
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCC
Q 005987 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSL 356 (666)
Q Consensus 281 l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v 356 (666)
..+.|...+..+. +.| ++.++.. .+.+.++ +...|.| |+..|.+++|+.++..++|+.+... .++.+
T Consensus 304 ~~n~Lkp~l~~G~--l~~-IgaTT~~----e~~~~~~-~d~AL~r-Rf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i 374 (852)
T TIGR03345 304 AANLLKPALARGE--LRT-IAATTWA----EYKKYFE-KDPALTR-RFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLI 374 (852)
T ss_pred HHHHhhHHhhCCC--eEE-EEecCHH----HHhhhhh-ccHHHHH-hCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCee
Confidence 2345667777664 233 3333321 1223333 2333444 5899999999999999998766653 35889
Q ss_pred CHHHHHHHHHHcCCc------HHHHHHHHHHHhc
Q 005987 357 STEQIDLVAQASGGD------IRQAITSLQFSSL 384 (666)
Q Consensus 357 ~~~~l~~Ia~~s~GD------IR~AIn~LQf~~~ 384 (666)
+++++..++..|.+= ..+||..|.-+|.
T Consensus 375 ~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 375 LDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred CHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 999999999998754 4678988887664
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=5.8e-12 Score=139.52 Aligned_cols=204 Identities=17% Similarity=0.256 Sum_probs=124.8
Q ss_pred CCcccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhh
Q 005987 146 RSLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQE 219 (666)
Q Consensus 146 ~sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e 219 (666)
.+|+.++. +......++.|.+.. ...++. ..+.++||||+|+|||++++++|+++ +..++.+++.+. ..+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~-~~~~~~-~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f--~~~ 183 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVS-EQGKGF-PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF--TEH 183 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhcc-ccccCC-CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH--HHH
Confidence 36777764 233334455554321 111122 23679999999999999999999987 677777765321 001
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceEE
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAV 298 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiVi 298 (666)
....... . ....|... |. ...+|+|||++.+.+... .+.+...+..+...+ .++ +
T Consensus 184 ~~~~l~~-----~---~~~~f~~~---~~-----------~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~I-I 239 (445)
T PRK12422 184 LVSAIRS-----G---EMQRFRQF---YR-----------NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLI-V 239 (445)
T ss_pred HHHHHhc-----c---hHHHHHHH---cc-----------cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcE-E
Confidence 1100000 0 11112111 11 234999999998765322 233333344444443 334 4
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
++++..... .....+.|.+++. ....+.+.+|+.+++.++|++.+...++.+++++++.|+....||+|..++.
T Consensus 240 lts~~~p~~----l~~l~~rL~SR~~--~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~ 313 (445)
T PRK12422 240 ISSTCAPQD----LKAMEERLISRFE--WGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHA 313 (445)
T ss_pred EecCCCHHH----HhhhHHHHHhhhc--CCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 455432110 1111233444332 1478999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 005987 379 LQFSS 383 (666)
Q Consensus 379 LQf~~ 383 (666)
|+.++
T Consensus 314 l~~l~ 318 (445)
T PRK12422 314 LTLLA 318 (445)
T ss_pred HHHHH
Confidence 99886
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=5.1e-12 Score=140.19 Aligned_cols=197 Identities=20% Similarity=0.260 Sum_probs=121.2
Q ss_pred CccccccCH---HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhh
Q 005987 147 SLEELAVQR---KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 147 sl~eLvg~~---k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~ 218 (666)
+|+++++.+ ........+.+. ++. .+.++||||||||||++++++|+++ +..++.+++.+ ...
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~-----~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~--f~~ 173 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKN-----PGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK--FLN 173 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhC-----cCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH--HHH
Confidence 677777433 233344444332 233 2579999999999999999999986 45677776533 111
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCceE
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~PiV 297 (666)
+...... .. .+..|.++.. ....+|||||++.+.+... ...+...+..+.+.++ .+
T Consensus 174 ~~~~~~~-----~~---~~~~f~~~~~-------------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k--~i 230 (440)
T PRK14088 174 DLVDSMK-----EG---KLNEFREKYR-------------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK--QI 230 (440)
T ss_pred HHHHHHh-----cc---cHHHHHHHHH-------------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC--eE
Confidence 1111100 01 1222332221 0134999999997654321 2334444555555543 34
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
+++++... . ......+.+.+++.. ...+.|.+|+.+.+.++|++.+..+++.+++++++.|++.+.||+|....
T Consensus 231 Iitsd~~p-~---~l~~l~~rL~SR~~~--gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 231 VICSDREP-Q---KLSEFQDRLVSRFQM--GLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred EEECCCCH-H---HHHHHHHHHhhHHhc--CceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHH
Confidence 44554221 1 111222344554432 56899999999999999999999999999999999999999999988665
Q ss_pred HHHH
Q 005987 378 SLQF 381 (666)
Q Consensus 378 ~LQf 381 (666)
.|.-
T Consensus 305 ~l~~ 308 (440)
T PRK14088 305 AIIK 308 (440)
T ss_pred HHHH
Confidence 5543
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.43 E-value=2.4e-12 Score=140.82 Aligned_cols=206 Identities=16% Similarity=0.208 Sum_probs=124.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
...++++|.|.+..+++|+..+...+.. .-|-.+++.+||+||||||||++|+++|++++..++.+++++.. .
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~--~ 203 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV--Q 203 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh--H
Confidence 3457889999999999999988643321 11333447899999999999999999999999999988765411 1
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHHHhc-
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRS- 291 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~- 291 (666)
. ..| .....++.+++.+... .+.||+|||+|.+.... .-..++..+..++..
T Consensus 204 ~-----~~g----~~~~~i~~~f~~a~~~------------~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 262 (389)
T PRK03992 204 K-----FIG----EGARLVRELFELAREK------------APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM 262 (389)
T ss_pred h-----hcc----chHHHHHHHHHHHHhc------------CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc
Confidence 1 111 1122344455555332 36799999999763210 001122233333321
Q ss_pred ----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 292 ----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 292 ----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
...++++|++. +..+ .+...+.|+ .-..|.|++|+.++..++|+..+....+. .+..+..|+
T Consensus 263 d~~~~~~~v~VI~aT-n~~~----------~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la 330 (389)
T PRK03992 263 DGFDPRGNVKIIAAT-NRID----------ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELA 330 (389)
T ss_pred cccCCCCCEEEEEec-CChh----------hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHH
Confidence 11234444333 2211 122223221 13579999999999999999877654432 123456677
Q ss_pred HH----cCCcHHHHHHHHHHHhc
Q 005987 366 QA----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ~~----s~GDIR~AIn~LQf~~~ 384 (666)
.. +++||+..++..-+.+.
T Consensus 331 ~~t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 331 ELTEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Confidence 66 44688887776666554
No 103
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.41 E-value=5.8e-12 Score=132.70 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=103.2
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~ 255 (666)
.++++|+||||||||||.+++++|+++|..++.+++++ ..+..+......+++.+..+.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~e-----------L~sk~vGEsEk~IR~~F~~A~~~a~------ 208 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE-----------LESENAGEPGKLIRQRYREAADIIK------ 208 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH-----------hhcCcCCcHHHHHHHHHHHHHHHhh------
Confidence 34489999999999999999999999999999998875 1122223445567777776654310
Q ss_pred CCCCCceEEEEeCCCCCcchh-----HH-HHHH-HHHHHHHhc-------------CCCceEEEEecCCCCCCccchhhh
Q 005987 256 GESKSSAILLIDDLPVTNGRT-----AF-ERLR-QCLLLLVRS-------------THIPTAVVLTECGKADSVDSTAQS 315 (666)
Q Consensus 256 ~~~~~~~IIlIDEid~l~~~~-----~~-~~l~-~~L~~l~~~-------------~~~PiViIit~~~~~~s~d~~~r~ 315 (666)
....++||+|||+|.+.++. .. .++. ..|..+++. ...+-|+|+..++.++
T Consensus 209 -~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-------- 279 (413)
T PLN00020 209 -KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-------- 279 (413)
T ss_pred -ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc--------
Confidence 01257899999999654321 11 1222 334444321 1122233333333332
Q ss_pred hhHHHHHHhhc-CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 005987 316 FEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (666)
Q Consensus 316 l~~L~s~L~r~-r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G 370 (666)
.|.+.|.|+ |+.. .|..|+.++...+|+.++...+ ++...+..|+....|
T Consensus 280 --~LDpALlRpGRfDk-~i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 280 --TLYAPLIRDGRMEK-FYWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPG 330 (413)
T ss_pred --cCCHhHcCCCCCCc-eeCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCC
Confidence 233333333 3333 3558999999999999988765 567888899988766
No 104
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.1e-12 Score=131.82 Aligned_cols=202 Identities=15% Similarity=0.219 Sum_probs=125.5
Q ss_pred CCccccccCHHHHHHHHHHHH------HhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFE------ERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~------~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
-.++||+|...+++-|++.+- ..++. .+-|=+.+|+.||||+|||.+|+++|.|++-.++.+.+++-. .
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G--irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt--S- 283 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT--S- 283 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhh--cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh--h-
Confidence 467899999888888877654 22221 233447899999999999999999999999888877766521 1
Q ss_pred hhhcccCCccccchhHHH-HHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch-------hHHHHHHHHHHHHHhc
Q 005987 220 YMHNCKTGLEYTSKLDEF-ENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-------TAFERLRQCLLLLVRS 291 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f-~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~-------~~~~~l~~~L~~l~~~ 291 (666)
.|....+.+ +-+++.++.|. |.+|||||||.+..+ ++-+++...|+..++.
T Consensus 284 ---------KwRGeSEKlvRlLFemARfyA------------PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 284 ---------KWRGESEKLVRLLFEMARFYA------------PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG 342 (491)
T ss_pred ---------hhccchHHHHHHHHHHHHHhC------------CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc
Confidence 122222333 44556665554 568999999976321 3445666556555543
Q ss_pred CC-----CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 292 TH-----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 292 ~~-----~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
.. .-+|+++..++.+ || |.+.|+|+.-..|.++-|+.+.....| +++-.+-...++-.++.|++
T Consensus 343 ~~~t~e~~k~VmVLAATN~P--Wd--------iDEAlrRRlEKRIyIPLP~~~~R~~Li-~~~l~~~~~~~~~~~~~lae 411 (491)
T KOG0738|consen 343 VQGTLENSKVVMVLAATNFP--WD--------IDEALRRRLEKRIYIPLPDAEARSALI-KILLRSVELDDPVNLEDLAE 411 (491)
T ss_pred cccccccceeEEEEeccCCC--cc--------hHHHHHHHHhhheeeeCCCHHHHHHHH-HHhhccccCCCCccHHHHHH
Confidence 21 2467777777654 33 333443322235666666665555544 45544433344555667776
Q ss_pred H----cCCcHHHHHHHHHHHhc
Q 005987 367 A----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ~----s~GDIR~AIn~LQf~~~ 384 (666)
. |+-||+.+....-+.++
T Consensus 412 ~~eGySGaDI~nvCreAsm~~m 433 (491)
T KOG0738|consen 412 RSEGYSGADITNVCREASMMAM 433 (491)
T ss_pred HhcCCChHHHHHHHHHHHHHHH
Confidence 6 55589988776666554
No 105
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.39 E-value=7.3e-12 Score=139.55 Aligned_cols=194 Identities=14% Similarity=0.218 Sum_probs=113.8
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE--
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-- 208 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-- 208 (666)
..+-.+++.+.++++|.|.+..+++++..+...+.. .-|-.+++.+|||||||||||++++++|++++..+..
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 345668888899999999999999999988643221 1133345789999999999999999999999765332
Q ss_pred ------EcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------h
Q 005987 209 ------WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------T 276 (666)
Q Consensus 209 ------~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~ 276 (666)
++...... + ..........++.+++.+..... .+.++||||||+|.+... .
T Consensus 249 ~~~~~fl~v~~~eL----l-----~kyvGete~~ir~iF~~Ar~~a~--------~g~p~IIfIDEiD~L~~~R~~~~s~ 311 (512)
T TIGR03689 249 GDKSYFLNIKGPEL----L-----NKYVGETERQIRLIFQRAREKAS--------DGRPVIVFFDEMDSIFRTRGSGVSS 311 (512)
T ss_pred CCceeEEeccchhh----c-----ccccchHHHHHHHHHHHHHHHhh--------cCCCceEEEehhhhhhcccCCCccc
Confidence 11111000 0 00111222344555555543221 124689999999976421 1
Q ss_pred HH-HHHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHh
Q 005987 277 AF-ERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQE 352 (666)
Q Consensus 277 ~~-~~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e 352 (666)
.. ..+...|+..++... .+-|+++..++..+. |.+.+.|+ | -..|.|.+|+..+...+|+..+..
T Consensus 312 d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~----------LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~- 380 (512)
T TIGR03689 312 DVETTVVPQLLSELDGVESLDNVIVIGASNREDM----------IDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD- 380 (512)
T ss_pred hHHHHHHHHHHHHhcccccCCceEEEeccCChhh----------CCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-
Confidence 11 122233444433211 123344444443322 33333331 2 346999999999999999988753
Q ss_pred CCCCC
Q 005987 353 QYSLS 357 (666)
Q Consensus 353 ~i~v~ 357 (666)
.+.++
T Consensus 381 ~l~l~ 385 (512)
T TIGR03689 381 SLPLD 385 (512)
T ss_pred cCCch
Confidence 34443
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1.7e-11 Score=138.21 Aligned_cols=199 Identities=19% Similarity=0.218 Sum_probs=126.7
Q ss_pred CCccccccCHH---HHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhh
Q 005987 146 RSLEELAVQRK---KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIW 217 (666)
Q Consensus 146 ~sl~eLvg~~k---~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~ 217 (666)
.+|+++++.+. ....+..+++.+ +.. .+.|+|||++|+|||+|++++|+++ ++.++.+++.+. .
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~-----~~~-~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef--~ 356 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAP-----AKA-YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF--T 356 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCc-----ccc-CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--H
Confidence 47888875332 333444444321 222 2469999999999999999999987 567777765431 1
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcCCCce
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~~~Pi 296 (666)
.+....... . .+..|.++ |. ..-+|||||++.+.+... .+.+..++..+.+.. .++
T Consensus 357 ~el~~al~~-----~---~~~~f~~~---y~-----------~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k~I 413 (617)
T PRK14086 357 NEFINSIRD-----G---KGDSFRRR---YR-----------EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-KQI 413 (617)
T ss_pred HHHHHHHHh-----c---cHHHHHHH---hh-----------cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-CCE
Confidence 111111000 0 11223322 21 124899999998865432 233445555555544 344
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
+|+++..... .....+.|++.+.. ...+.+.+|+.+...++|++.+...++.++++++++|+....+|+|...
T Consensus 414 -IITSd~~P~e----L~~l~~rL~SRf~~--GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 414 -VLSSDRPPKQ----LVTLEDRLRNRFEW--GLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred -EEecCCChHh----hhhccHHHHhhhhc--CceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHH
Confidence 4556543211 11123456776654 7789999999999999999999999999999999999999999999866
Q ss_pred HHHHHH
Q 005987 377 TSLQFS 382 (666)
Q Consensus 377 n~LQf~ 382 (666)
..|.-+
T Consensus 487 gaL~rL 492 (617)
T PRK14086 487 GALIRV 492 (617)
T ss_pred HHHHHH
Confidence 655433
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.37 E-value=8.8e-12 Score=135.48 Aligned_cols=210 Identities=16% Similarity=0.231 Sum_probs=122.6
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+++....+++++.|.++.+++++.++...+... -|-.+++.+||+||||||||++|+++|++++..++.+..++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~- 191 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE- 191 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH-
Confidence 345556788999999999999999987443321 12233478999999999999999999999998888776432
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l 288 (666)
....+. | .....+..++..+.. ..+.||+|||+|.+.... .-...+..+..+
T Consensus 192 -l~~~~~-----g----~~~~~i~~~f~~a~~------------~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 192 -LVRKYI-----G----EGARLVREIFELAKE------------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred -HHHHhh-----h----HHHHHHHHHHHHHHh------------cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 111111 1 111223444444432 135799999999763210 001112222222
Q ss_pred H---hc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 289 V---RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 289 ~---~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
+ .. ...++++|++. +..+. +...+.++ ....|.|++|+.++..++++..+....+. ++..+
T Consensus 250 l~~ld~~~~~~~v~vI~tt-n~~~~----------ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~ 317 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAAT-NRPDI----------LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL 317 (364)
T ss_pred HHHhhCCCCCCCEEEEEec-CChhh----------CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH
Confidence 2 21 12234444433 22211 22222211 14579999999999999998776543332 11235
Q ss_pred HHHHHHcC----CcHHHHHHHHHHHhc
Q 005987 362 DLVAQASG----GDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~----GDIR~AIn~LQf~~~ 384 (666)
..|+..+. +||+.++...-+.|.
T Consensus 318 ~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 318 EAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 66666654 488877776655554
No 108
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=7.7e-12 Score=149.45 Aligned_cols=213 Identities=17% Similarity=0.192 Sum_probs=142.5
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
....++++.+|..+++++|+++.++.+...|.+. . .+.+||+||||||||++++.||+.+ +.
T Consensus 159 ~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~------~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSRR------T--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcC------C--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 4567999999999999999999999998887652 1 2578899999999999999999986 45
Q ss_pred cEEEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---hHHHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---TAFER 280 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---~~~~~ 280 (666)
.++.++... ...|..|. .....+..++.++..+. .+.||||||++.+.+. ..-..
T Consensus 231 ~~~~l~~~~----------l~a~~~~~g~~e~~l~~~l~~~~~~~-----------~~~ILfIDEih~l~~~g~~~~~~d 289 (852)
T TIGR03346 231 RLLALDMGA----------LIAGAKYRGEFEERLKAVLNEVTKSE-----------GQIILFIDELHTLVGAGKAEGAMD 289 (852)
T ss_pred eEEEeeHHH----------HhhcchhhhhHHHHHHHHHHHHHhcC-----------CCeEEEeccHHHhhcCCCCcchhH
Confidence 555554221 11222222 22335666666664332 3579999999987531 11112
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCC
Q 005987 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSL 356 (666)
Q Consensus 281 l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v 356 (666)
..+.|...+..+. +.+|.++ +.. .+.+.+. +...+.+ |+..|.+..|+.++..++|+.+... .++.+
T Consensus 290 ~~~~Lk~~l~~g~--i~~IgaT-t~~----e~r~~~~-~d~al~r-Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 290 AGNMLKPALARGE--LHCIGAT-TLD----EYRKYIE-KDAALER-RFQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred HHHHhchhhhcCc--eEEEEeC-cHH----HHHHHhh-cCHHHHh-cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 3455666665554 3333332 221 1111122 2344444 6888999999999999999877654 35778
Q ss_pred CHHHHHHHHHHcCC---c---HHHHHHHHHHHhcC
Q 005987 357 STEQIDLVAQASGG---D---IRQAITSLQFSSLK 385 (666)
Q Consensus 357 ~~~~l~~Ia~~s~G---D---IR~AIn~LQf~~~~ 385 (666)
.++++..++..|.+ | ..+||..|.-+|..
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 99999999988764 3 57899999888753
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36 E-value=4.3e-12 Score=151.20 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=143.1
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCcE
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARL 206 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~v 206 (666)
..++++-+...++.++|+++.++.+..+|..+. ++.+||+||||||||++|+.||+.+ +..+
T Consensus 167 ~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~--------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 167 TNLTKEAIDGNLDPVIGREKEIERVIQILGRRT--------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccc--------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 456777788899999999999999999997532 2578999999999999999999987 3667
Q ss_pred EEEcCCCchhhhhhhhcccCCccccc-hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH---HHHHH
Q 005987 207 YEWDTPTPTIWQEYMHNCKTGLEYTS-KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---FERLR 282 (666)
Q Consensus 207 iE~nasd~~~~~e~l~~~~~g~~~~s-~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~---~~~l~ 282 (666)
++++... ...|..|.. ..+.++.+++.+... .+.||+|||++.+.+... -..+.
T Consensus 239 ~~l~~~~----------l~ag~~~~ge~e~rl~~i~~~~~~~------------~~~ILfiDEih~l~~~g~~~g~~~~a 296 (821)
T CHL00095 239 ITLDIGL----------LLAGTKYRGEFEERLKRIFDEIQEN------------NNIILVIDEVHTLIGAGAAEGAIDAA 296 (821)
T ss_pred EEeeHHH----------HhccCCCccHHHHHHHHHHHHHHhc------------CCeEEEEecHHHHhcCCCCCCcccHH
Confidence 7766432 123444432 234566677766432 257999999997643210 01234
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCCCH
Q 005987 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v~~ 358 (666)
+.|...+..+.. .+|. .++.. .+.+.++ ....+.+ ++..|.+..++..+...+|+.+... .++.+++
T Consensus 297 ~lLkp~l~rg~l--~~Ig-aTt~~----ey~~~ie-~D~aL~r-Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~d 367 (821)
T CHL00095 297 NILKPALARGEL--QCIG-ATTLD----EYRKHIE-KDPALER-RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISD 367 (821)
T ss_pred HHhHHHHhCCCc--EEEE-eCCHH----HHHHHHh-cCHHHHh-cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 556666666653 2332 22211 1222222 2334444 6889999999999998888876543 3567899
Q ss_pred HHHHHHHHHcCCc------HHHHHHHHHHHhcC
Q 005987 359 EQIDLVAQASGGD------IRQAITSLQFSSLK 385 (666)
Q Consensus 359 ~~l~~Ia~~s~GD------IR~AIn~LQf~~~~ 385 (666)
+++..++..|.|- .++||..|..+|..
T Consensus 368 eal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 368 KALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 9999999998763 56799999888763
No 110
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-11 Score=133.10 Aligned_cols=208 Identities=16% Similarity=0.266 Sum_probs=130.4
Q ss_pred cccCCCCccccccCHHHHHHHH---HHHHHh--hcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 141 EKYKPRSLEELAVQRKKVEEVR---AWFEER--LGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~---~wL~~~--~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
++-.-.+|+|+.|-++..++|. ++|++- +..-.|++| +.+||+||||+|||.+||++|-|.+..++....|..
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF- 373 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF- 373 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccCCCeEeccccch-
Confidence 3444567999999776655554 555432 112237787 889999999999999999999999999988777652
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---HHHHHHHHHHHHHhc-
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFERLRQCLLLLVRS- 291 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---~~~~l~~~L~~l~~~- 291 (666)
.| ...|+. ..++++++..++.. .|+||+|||+|.+.+.. ........|.+++-.
T Consensus 374 --dE----m~VGvG----ArRVRdLF~aAk~~------------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEm 431 (752)
T KOG0734|consen 374 --DE----MFVGVG----ARRVRDLFAAAKAR------------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEM 431 (752)
T ss_pred --hh----hhhccc----HHHHHHHHHHHHhc------------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHh
Confidence 11 123333 34667777777543 48999999999764321 111223344444322
Q ss_pred ---CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHH
Q 005987 292 ---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLST-EQIDLVA 365 (666)
Q Consensus 292 ---~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~-~~l~~Ia 365 (666)
.+.--||++++++.++ .|...|-||+ -.+|..+.|+..-..++|...+.+- ..++ -.+..||
T Consensus 432 DGF~qNeGiIvigATNfpe----------~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiA 499 (752)
T KOG0734|consen 432 DGFKQNEGIIVIGATNFPE----------ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIA 499 (752)
T ss_pred cCcCcCCceEEEeccCChh----------hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhc
Confidence 2222345556665543 3455555553 3468888888888888888777552 2221 2234566
Q ss_pred HH----cCCcHHHHHHHHHHHhc
Q 005987 366 QA----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ~~----s~GDIR~AIn~LQf~~~ 384 (666)
.. ++.|+-+.+|..-..+.
T Consensus 500 RGT~GFsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 500 RGTPGFSGADLANLVNQAALKAA 522 (752)
T ss_pred cCCCCCchHHHHHHHHHHHHHHH
Confidence 65 45588888887655544
No 111
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=3.5e-11 Score=128.87 Aligned_cols=194 Identities=17% Similarity=0.223 Sum_probs=120.2
Q ss_pred Ccccccc-CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcE-EEEcCCCchhhhhhhhc-
Q 005987 147 SLEELAV-QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL-YEWDTPTPTIWQEYMHN- 223 (666)
Q Consensus 147 sl~eLvg-~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~v-iE~nasd~~~~~e~l~~- 223 (666)
.++.|+| |+..++.++..+.. |+.+ +.+||+||+|+||+++|+.+|+.+.+.- ..-.+...+.....+.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------~~l~-ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------NRLS-HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 3567888 99999999998876 7776 7899999999999999999999985431 00000000000000000
Q ss_pred ccCCc------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceE
Q 005987 224 CKTGL------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 224 ~~~g~------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiV 297 (666)
..... .-.-..++++++++.+...+ .. ...+|+||||++.++.. ..++|++.++.....++
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-----~~---~~~kvviI~~a~~~~~~-----a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-----VE---SNKKVYIIEHADKMTAS-----AANSLLKFLEEPSGGTT 142 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCC-----cc---cCceEEEeehHhhhCHH-----HHHHHHHHhcCCCCCce
Confidence 00000 01123566777666654222 11 13579999999988643 33457777777554444
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
+|..... ..+.++.|++ ||..|.|.+++..++.+.|. .++ ++++....++..+ |+++.|+.
T Consensus 143 ~Il~t~~-------~~~ll~TIrS-----Rc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~ 203 (329)
T PRK08058 143 AILLTEN-------KHQILPTILS-----RCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALA 203 (329)
T ss_pred EEEEeCC-------hHhCcHHHHh-----hceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHH
Confidence 4433321 2344455554 69999999999999987775 345 5566666666664 78988876
Q ss_pred HH
Q 005987 378 SL 379 (666)
Q Consensus 378 ~L 379 (666)
.+
T Consensus 204 l~ 205 (329)
T PRK08058 204 LS 205 (329)
T ss_pred Hh
Confidence 54
No 112
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.33 E-value=2.3e-11 Score=143.72 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=125.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
..+++++.|.+...++|++.+.-.+... -|..+++.+|||||||||||++|+++|++++..++.+..++. ...
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l--~~~ 526 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI--LSK 526 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH--hhc
Confidence 4578999999999999988876433211 132334789999999999999999999999999999887641 111
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch-------hHHHHHHHHHHHHHhc-
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-------TAFERLRQCLLLLVRS- 291 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~-------~~~~~l~~~L~~l~~~- 291 (666)
.+......++.++..+... .++||||||+|.+... ....++...|+..+..
T Consensus 527 ---------~vGese~~i~~~f~~A~~~------------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~ 585 (733)
T TIGR01243 527 ---------WVGESEKAIREIFRKARQA------------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI 585 (733)
T ss_pred ---------ccCcHHHHHHHHHHHHHhc------------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc
Confidence 1122234566677766543 3679999999976321 1123344434444432
Q ss_pred -CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Q 005987 292 -THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLST-EQIDLVAQA 367 (666)
Q Consensus 292 -~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~-~~l~~Ia~~ 367 (666)
....+++| +.++.++. |.+.+.|+ | -..|.|++|+..+..++++..... ..+++ ..++.||..
T Consensus 586 ~~~~~v~vI-~aTn~~~~----------ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~ 652 (733)
T TIGR01243 586 QELSNVVVI-AATNRPDI----------LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEM 652 (733)
T ss_pred cCCCCEEEE-EeCCChhh----------CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHH
Confidence 12234444 33343322 22333321 2 357899999999999998866543 33332 346778876
Q ss_pred c----CCcHHHHHHHHHHHh
Q 005987 368 S----GGDIRQAITSLQFSS 383 (666)
Q Consensus 368 s----~GDIR~AIn~LQf~~ 383 (666)
+ +.||..+++...+.+
T Consensus 653 t~g~sgadi~~~~~~A~~~a 672 (733)
T TIGR01243 653 TEGYTGADIEAVCREAAMAA 672 (733)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 4 457776665444444
No 113
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=6.8e-11 Score=124.41 Aligned_cols=114 Identities=20% Similarity=0.308 Sum_probs=75.6
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCC--Cccc-hhhhhhHHHHHHhhcCeeEEEeCCCC
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKAD--SVDS-TAQSFEELQSILVDAGARKVALNPIT 337 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~--s~d~-~~r~l~~L~s~L~r~r~~~I~F~p~s 337 (666)
|-||||||++.++-. .|. .|...+++.-.|+|+++++.+... ..|. ..+.++ ..+|. ||..|+-.|++
T Consensus 279 pGVLFIDEvHmLDiE-cFs----fLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP--~DlLD--RllII~t~py~ 349 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE-CFS----FLNRALESELSPIIILATNRGITKIRGTDIISPHGIP--LDLLD--RLLIIRTKPYS 349 (398)
T ss_dssp E-EEEEESGGGSBHH-HHH----HHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT----HHHHT--TEEEEEE----
T ss_pred cceEEecchhhccHH-HHH----HHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCC--cchHh--hcEEEECCCCC
Confidence 569999999988643 232 466777888889999999865321 1122 222232 45666 49999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHh
Q 005987 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQFSS 383 (666)
Q Consensus 338 ~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-s~GDIR~AIn~LQf~~ 383 (666)
.++++++|...|+.|++.+++++++.|+.. ....+|.|++.|..+.
T Consensus 350 ~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 350 EEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 999999999999999999999999999976 4578999999886553
No 114
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.31 E-value=3.1e-10 Score=113.98 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=130.3
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhh
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW 217 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~ 217 (666)
....|..+++|+|-+...+.|..-.+..+. |.+. +++||+|++|||||++|+++..++ |+.++|+...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---G~pa-nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~---- 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ---GLPA-NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED---- 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc---CCCC-cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH----
Confidence 445678899999999988888877776664 5544 789999999999999999999987 88999987533
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceE
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiV 297 (666)
+..+..+++.++.. ..+.||++||+---.....+..+..+|..-++... .-|
T Consensus 91 ----------------L~~l~~l~~~l~~~-----------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P-~Nv 142 (249)
T PF05673_consen 91 ----------------LGDLPELLDLLRDR-----------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARP-DNV 142 (249)
T ss_pred ----------------hccHHHHHHHHhcC-----------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCC-CcE
Confidence 22344555555422 24679999998643333445555554444333222 234
Q ss_pred EEEecCCCCCC-----ccc---------hhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 298 VVLTECGKADS-----VDS---------TAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 298 iIit~~~~~~s-----~d~---------~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
+|..+++.... .|. ..-.++.--++-.| ....|.|.+++.++-.+++...+.+.++.++++.+..
T Consensus 143 liyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDR-FGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 143 LIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDR-FGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred EEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHh-CCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44443332110 000 01111221233334 5678999999999999999999999999998644433
Q ss_pred -----HHHHcCCcHHHHHHHHHHH
Q 005987 364 -----VAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 364 -----Ia~~s~GDIR~AIn~LQf~ 382 (666)
-....+..-|.|-.-...+
T Consensus 222 ~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 222 EALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3333334555555444433
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=1.5e-11 Score=146.54 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=142.4
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
...+.+++.+|..+++++|+++.++.+...|.+.. .+.+||+||||||||++|+.||+.+ ++
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~ 235 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT--------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 235 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC--------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCC
Confidence 45678999999999999999999999988887521 1478999999999999999999998 56
Q ss_pred cEEEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---HHHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFER 280 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---~~~~ 280 (666)
.++.++... ...|..|. .....++.+++++.... .+.||||||++.+.+.. .-..
T Consensus 236 ~~~~l~l~~----------l~ag~~~~g~~e~~lk~~~~~~~~~~-----------~~~ILfIDEih~l~~~~~~~~~~d 294 (857)
T PRK10865 236 RVLALDMGA----------LVAGAKYRGEFEERLKGVLNDLAKQE-----------GNVILFIDELHTMVGAGKADGAMD 294 (857)
T ss_pred EEEEEehhh----------hhhccchhhhhHHHHHHHHHHHHHcC-----------CCeEEEEecHHHhccCCCCccchh
Confidence 666655432 11233332 22335666666654322 35799999999875321 0112
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCC
Q 005987 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSL 356 (666)
Q Consensus 281 l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v 356 (666)
..+.|...+..+. +. ++++++..+ +.+.++ +...+.| |+..|.+..|+.++...+|+.+... .++.+
T Consensus 295 ~~~~lkp~l~~g~--l~-~IgaTt~~e----~r~~~~-~d~al~r-Rf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~ 365 (857)
T PRK10865 295 AGNMLKPALARGE--LH-CVGATTLDE----YRQYIE-KDAALER-RFQKVFVAEPSVEDTIAILRGLKERYELHHHVQI 365 (857)
T ss_pred HHHHhcchhhcCC--Ce-EEEcCCCHH----HHHHhh-hcHHHHh-hCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCc
Confidence 3455666666664 33 334433221 122222 3444444 5778999999999999999877654 35778
Q ss_pred CHHHHHHHHHHcCCc------HHHHHHHHHHHhcCC
Q 005987 357 STEQIDLVAQASGGD------IRQAITSLQFSSLKQ 386 (666)
Q Consensus 357 ~~~~l~~Ia~~s~GD------IR~AIn~LQf~~~~~ 386 (666)
+++++...+..+.+= ..+|+..+..+|.+-
T Consensus 366 ~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~ 401 (857)
T PRK10865 366 TDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSI 401 (857)
T ss_pred CHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccc
Confidence 899988887776543 356777777777643
No 116
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.5e-11 Score=138.21 Aligned_cols=207 Identities=16% Similarity=0.230 Sum_probs=133.9
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
.+-+|+|++|-++..++|.+++. .++++ .|...++.+||+||||||||.+|+++|.|.|..++.+++++...
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE-- 382 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE-- 382 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH--
Confidence 34679999999988888887765 23221 24334489999999999999999999999999999999876221
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH---H-----HHHHHHHHHHHh
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---F-----ERLRQCLLLLVR 290 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~---~-----~~l~~~L~~l~~ 290 (666)
. ..|. .....++++..++.. .|+||+|||+|....... . ++- ..|.+++-
T Consensus 383 -~----~~g~----~asrvr~lf~~ar~~------------aP~iifideida~~~~r~G~~~~~~~~e~e-~tlnQll~ 440 (774)
T KOG0731|consen 383 -M----FVGV----GASRVRDLFPLARKN------------APSIIFIDEIDAVGRKRGGKGTGGGQDERE-QTLNQLLV 440 (774)
T ss_pred -H----hccc----chHHHHHHHHHhhcc------------CCeEEEecccccccccccccccCCCChHHH-HHHHHHHH
Confidence 1 1111 133566666666543 478999999997643220 0 111 12333332
Q ss_pred c----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005987 291 S----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (666)
Q Consensus 291 ~----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~I 364 (666)
. ...--|++++.|+..+. |...|.|++ -..|....|+......++.-.+..-....++..+..|
T Consensus 441 emDgf~~~~~vi~~a~tnr~d~----------ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~ 510 (774)
T KOG0731|consen 441 EMDGFETSKGVIVLAATNRPDI----------LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKL 510 (774)
T ss_pred HhcCCcCCCcEEEEeccCCccc----------cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHH
Confidence 1 11122444555554443 333333332 3468999999999999999877766665566666668
Q ss_pred HHHcC----CcHHHHHHHHHHHhcC
Q 005987 365 AQASG----GDIRQAITSLQFSSLK 385 (666)
Q Consensus 365 a~~s~----GDIR~AIn~LQf~~~~ 385 (666)
|..+. -||....|.....+..
T Consensus 511 a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 511 ASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred HhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 87754 4777777776666654
No 117
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.4e-10 Score=123.71 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=108.2
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCchhhhhhhhc--------cc-CCccccchhHHHHHHHHH
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTPTIWQEYMHN--------CK-TGLEYTSKLDEFENFVER 243 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~~~~~e~l~~--------~~-~g~~~~s~~~~f~~fl~~ 243 (666)
|+.+ +.+||+||+|+|||++|+.+|+.+.+.--. ..+...+.....+.. .. .+..-.-.+++++++++.
T Consensus 19 ~r~~-ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 19 GRHP-HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSF 97 (328)
T ss_pred CCcc-eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHH
Confidence 6666 789999999999999999999999653110 001011100000000 00 010112346777777766
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHH
Q 005987 244 IRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSIL 323 (666)
Q Consensus 244 a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L 323 (666)
+...+. ....+|+|||+++.++.. ..++|++.++.....++||+.... ..+.++.|++
T Consensus 98 ~~~~~~--------~~~~kv~iI~~a~~m~~~-----aaNaLLK~LEEPp~~~~fiL~t~~-------~~~ll~TI~S-- 155 (328)
T PRK05707 98 VVQTAQ--------LGGRKVVLIEPAEAMNRN-----AANALLKSLEEPSGDTVLLLISHQ-------PSRLLPTIKS-- 155 (328)
T ss_pred Hhhccc--------cCCCeEEEECChhhCCHH-----HHHHHHHHHhCCCCCeEEEEEECC-------hhhCcHHHHh--
Confidence 643221 123568999999998653 234566666765433344433321 2234444554
Q ss_pred hhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 324 VDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 324 ~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
||..+.|.+++.+++.+.|...+. ..+++....++..++|.+..|+..+
T Consensus 156 ---Rc~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 156 ---RCQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred ---hceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHH
Confidence 699999999999999999875431 2456667788899999999887653
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.29 E-value=4.3e-11 Score=141.80 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=111.0
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCcc
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLE 229 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~ 229 (666)
++.|+++.++.|.+|+..+... +....++++|+||||||||++|+++|++++..++.++........+..... ..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~--~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~---~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR--GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR---RT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh--cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC---Cc
Confidence 4778999999999998754332 222335899999999999999999999999999988765432222211110 00
Q ss_pred c-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhc---C------------C
Q 005987 230 Y-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS---T------------H 293 (666)
Q Consensus 230 ~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~---~------------~ 293 (666)
| ......+.+.+..+.. ...||||||+|.+.... .+...++|+.+++. . .
T Consensus 396 ~~g~~~g~i~~~l~~~~~-------------~~~villDEidk~~~~~-~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKAKT-------------KNPLFLLDEIDKIGSSF-RGDPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred eeCCCCchHHHHHHHhCc-------------CCCEEEEechhhcCCcc-CCCHHHHHHHhcCHHhcCccccccCCceecc
Confidence 1 1111222222332211 12389999999875321 00111223333321 0 0
Q ss_pred CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHH-----H-----hCCCCCHHHHHH
Q 005987 294 IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICR-----Q-----EQYSLSTEQIDL 363 (666)
Q Consensus 294 ~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~-----~-----e~i~v~~~~l~~ 363 (666)
..++||++. +.. ..+...|.+ |+..|.|++++.++..+++++.+. . +++.++++++..
T Consensus 462 s~v~~I~Tt-N~~----------~~i~~~L~~-R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~ 529 (775)
T TIGR00763 462 SKVIFIATA-NSI----------DTIPRPLLD-RMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLL 529 (775)
T ss_pred CCEEEEEec-CCc----------hhCCHHHhC-CeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHH
Confidence 124444433 221 112222323 588999999999999988876542 1 245789999999
Q ss_pred HHHH
Q 005987 364 VAQA 367 (666)
Q Consensus 364 Ia~~ 367 (666)
|++.
T Consensus 530 i~~~ 533 (775)
T TIGR00763 530 LIKY 533 (775)
T ss_pred HHHh
Confidence 9975
No 119
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.5e-10 Score=124.83 Aligned_cols=206 Identities=19% Similarity=0.264 Sum_probs=135.6
Q ss_pred cccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---C--CcEEEEcCCC
Q 005987 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---G--ARLYEWDTPT 213 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g--~~viE~nasd 213 (666)
.-.+|...+|-.=.++.........|-+. +|. +.+.|+||||.|+|||+++++++++. + ..++.+.+.+
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~-----~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAEN-----PGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhc-----cCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 44556555542222355566666666554 233 34789999999999999999999987 2 3455544332
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH-HHHHHHHHHHHHhcC
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRST 292 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~-~~~l~~~L~~l~~~~ 292 (666)
...+.+.+.. ....+.|+++ | . --+++|||++.+.+... .+.+-..+..+...+
T Consensus 154 --f~~~~v~a~~-----~~~~~~Fk~~------y-~-----------~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~ 208 (408)
T COG0593 154 --FTNDFVKALR-----DNEMEKFKEK------Y-S-----------LDLLLIDDIQFLAGKERTQEEFFHTFNALLENG 208 (408)
T ss_pred --HHHHHHHHHH-----hhhHHHHHHh------h-c-----------cCeeeechHhHhcCChhHHHHHHHHHHHHHhcC
Confidence 1111111110 1122233322 2 1 12899999998866532 233445566676666
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDI 372 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDI 372 (666)
+ .|+++++..+.. ..-..++|++++.. +..+.+.||+.+....+|++.+...++.++++++..|+.....|+
T Consensus 209 k--qIvltsdr~P~~----l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 209 K--QIVLTSDRPPKE----LNGLEDRLRSRLEW--GLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred C--EEEEEcCCCchh----hccccHHHHHHHhc--eeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccH
Confidence 6 566777654332 12233568888875 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005987 373 RQAITSLQFSS 383 (666)
Q Consensus 373 R~AIn~LQf~~ 383 (666)
|.+...|..+.
T Consensus 281 ReLegaL~~l~ 291 (408)
T COG0593 281 RELEGALNRLD 291 (408)
T ss_pred HHHHHHHHHHH
Confidence 98776664443
No 120
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.5e-11 Score=125.95 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=108.6
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhh
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~ 217 (666)
=+|.+|+-|+-.+++.++|.+=|...... ..|++=.|..|||||||||||+++.|+|+.|+|.|+-++-+...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-- 272 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-- 272 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc--
Confidence 46789999999888877777666544332 23666568999999999999999999999999999877644310
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc-----------------hhHHHH
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-----------------RTAFER 280 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~-----------------~~~~~~ 280 (666)
.-.+++.+|.... .+.||||+|||-... .-.+.+
T Consensus 273 ---------------~n~dLr~LL~~t~--------------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSG 323 (457)
T KOG0743|consen 273 ---------------LDSDLRHLLLATP--------------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSG 323 (457)
T ss_pred ---------------CcHHHHHHHHhCC--------------CCcEEEEeecccccccccccccccccccCCcceeehHH
Confidence 1123555554321 245999999995311 012344
Q ss_pred HHHHHHHHHhcCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 281 LRQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 281 l~~~L~~l~~~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
+.+++..+-..+.. -|||++|+ ..+.|.+.|-|++ -.+|.+...+....+....+.+..
T Consensus 324 LLNfiDGlwSscg~ERIivFTTN------------h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 324 LLNFLDGLWSSCGDERIIVFTTN------------HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhhhhccccccCCCceEEEEecC------------ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 55555555444422 24444444 2334666666654 346899999999888887776654
No 121
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.9e-11 Score=123.44 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=117.0
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCC----CCC--CCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDS----KDK--FSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~----~g~--~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
+++|+-|-+..++++++.+.--+... .|+ .+.+.+||+||||||||-+|+++|++.|..++.+.-+.... +
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~--K- 166 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS--K- 166 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch--h-
Confidence 57888888888888887764221110 111 13478999999999999999999999999988776554211 1
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHH---Hhc
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLL---VRS 291 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l---~~~ 291 (666)
.|....+-.+.++.-+.+. .|.||+|||+|.+-+. ++.....+.+..+ +.+
T Consensus 167 --------WfgE~eKlv~AvFslAsKl------------~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 167 --------WFGEAQKLVKAVFSLASKL------------QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred --------hHHHHHHHHHHHHhhhhhc------------CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence 1111111222222222221 4789999999964321 1111111111111 112
Q ss_pred CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 005987 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (666)
Q Consensus 292 ~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GD 371 (666)
...-.|++.++++.+.. |.+.+-|+-+..++.+-|+..+..++|+-+++.|.+. ++-.++.||..+.|=
T Consensus 227 ~~~~rVlVlgATNRP~D----------lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~Gy 295 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFD----------LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGY 295 (386)
T ss_pred CCCceEEEEeCCCCCcc----------HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCC
Confidence 22234777777765432 3333333358899999999999999999999999875 344467788776653
No 122
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.26 E-value=1.1e-10 Score=137.85 Aligned_cols=194 Identities=17% Similarity=0.246 Sum_probs=121.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
...++++|.|.++.++.|++++...+.. .-|-.+++.+||+||||||||++++++|++++..++.++.++..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~--- 249 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM--- 249 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh---
Confidence 4468999999999999999998743321 11333447899999999999999999999999999998875410
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHHHhcC
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRST 292 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~~ 292 (666)
+..+......+..+++.+... .+.||+|||+|.+.... .-.++...|..+++.-
T Consensus 250 --------~~~~g~~~~~l~~lf~~a~~~------------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 250 --------SKYYGESEERLREIFKEAEEN------------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred --------cccccHHHHHHHHHHHHHHhc------------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 001122234566666665432 35699999998764221 1123344455555432
Q ss_pred --CCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Q 005987 293 --HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSL-STEQIDLVAQA 367 (666)
Q Consensus 293 --~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v-~~~~l~~Ia~~ 367 (666)
+..+++| +.++.... +...+.++ ....|.|..|+.++..++|+..+.. ..+ ++..++.|++.
T Consensus 310 ~~~~~vivI-~atn~~~~----------ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~ 376 (733)
T TIGR01243 310 KGRGRVIVI-GATNRPDA----------LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEV 376 (733)
T ss_pred ccCCCEEEE-eecCChhh----------cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHh
Confidence 2344444 33333221 22222221 2357899999999999999865543 333 24457888888
Q ss_pred cCCcHH
Q 005987 368 SGGDIR 373 (666)
Q Consensus 368 s~GDIR 373 (666)
+.|-..
T Consensus 377 t~G~~g 382 (733)
T TIGR01243 377 THGFVG 382 (733)
T ss_pred CCCCCH
Confidence 777443
No 123
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.25 E-value=8e-11 Score=108.03 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=68.3
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKS 260 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~ 260 (666)
+||+||||||||++|+.+|+.++..+++++.+... +.........+..++.++.... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~-----------~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-----------SSYAGDSEQKIRDFFKKAKKSA-----------K 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-----------TSSTTHHHHHHHHHHHHHHHTS-----------T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-----------cccccccccccccccccccccc-----------c
Confidence 68999999999999999999999999999987511 1122344556777777775432 2
Q ss_pred ceEEEEeCCCCCcchh------HHHHHHHHHHHHHhcCCC---ceEEEEec
Q 005987 261 SAILLIDDLPVTNGRT------AFERLRQCLLLLVRSTHI---PTAVVLTE 302 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~~~~---PiViIit~ 302 (666)
+.||+|||+|.+.... .-..+.+.|...++.... ++++|++.
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~tt 109 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATT 109 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEee
Confidence 5799999999875432 223344556666665443 35555444
No 124
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.6e-10 Score=130.81 Aligned_cols=191 Identities=15% Similarity=0.191 Sum_probs=120.5
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCC-----CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~-----g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
.++.++.|-+...+.++..+.--+.... +..+.+.+||+||||||||.+|+++|++++..++.+..++ .
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~--l---- 312 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE--L---- 312 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH--H----
Confidence 4667777765555555555442222211 3334478999999999999999999999999999998874 1
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHHHhc--C
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRS--T 292 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~--~ 292 (666)
.+..+......++..+..+.+. .++||+|||+|.+.... ...++...++..+.. .
T Consensus 313 -----~sk~vGesek~ir~~F~~A~~~------------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 313 -----LSKWVGESEKNIRELFEKARKL------------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred -----hccccchHHHHHHHHHHHHHcC------------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 2222344556677777777643 36899999999763211 112444334444321 1
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhh--cCeeEEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcC
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVD--AGARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQIDLVAQASG 369 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r--~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~-v~~~~l~~Ia~~s~ 369 (666)
... |+++..++.++..| +.+.| +.-..|.|.+|+..+..++++..+...... ..+-.++.|++.+.
T Consensus 376 ~~~-v~vi~aTN~p~~ld----------~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~ 444 (494)
T COG0464 376 AEG-VLVIAATNRPDDLD----------PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITE 444 (494)
T ss_pred cCc-eEEEecCCCccccC----------HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhc
Confidence 223 44555555544322 22222 124579999999999999999888765543 44566777777554
Q ss_pred C
Q 005987 370 G 370 (666)
Q Consensus 370 G 370 (666)
|
T Consensus 445 ~ 445 (494)
T COG0464 445 G 445 (494)
T ss_pred C
Confidence 4
No 125
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.6e-10 Score=129.44 Aligned_cols=202 Identities=18% Similarity=0.279 Sum_probs=121.6
Q ss_pred CccccccCHHHHHHHHHHHHHhhcC----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
+++|+-|-++...+|.+-++--++- +.|-.+...+|||||||||||.+|+++|-|+...++.+..|. +.
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE-------LL 742 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE-------LL 742 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH-------HH
Confidence 5688999999999998887642221 112211246999999999999999999999999999888775 11
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch--------hHHHHHHHHHH----HHHh
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--------TAFERLRQCLL----LLVR 290 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~--------~~~~~l~~~L~----~l~~ 290 (666)
|... ....+..++++++|+.. .|+||++||+|.+... .-..|+...|+ .+.+
T Consensus 743 NMYV----GqSE~NVR~VFerAR~A------------~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 743 NMYV----GQSEENVREVFERARSA------------APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred HHHh----cchHHHHHHHHHHhhcc------------CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC
Confidence 2222 33456788899998643 4899999999976321 12233332222 2222
Q ss_pred cCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-CeeE-EEeCCCCHHHH-HHHHHHHHHHhCCCCCHH-HHHHHHH
Q 005987 291 STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARK-VALNPITNGSI-KRTLSKICRQEQYSLSTE-QIDLVAQ 366 (666)
Q Consensus 291 ~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~~~-I~F~p~s~~~i-~kiL~~I~~~e~i~v~~~-~l~~Ia~ 366 (666)
. ..--|||+++++.++..| ..|-|| |+.. +...+....+- .++|+.+.++ ++++++ -+..||+
T Consensus 807 ~-~s~~VFViGATNRPDLLD----------pALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk 873 (953)
T KOG0736|consen 807 S-SSQDVFVIGATNRPDLLD----------PALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAK 873 (953)
T ss_pred C-CCCceEEEecCCCccccC----------hhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHh
Confidence 1 222457778887766433 233333 3444 45555544333 3334433333 444433 3677887
Q ss_pred H-----cCCcHHHHHHHHHHHhc
Q 005987 367 A-----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ~-----s~GDIR~AIn~LQf~~~ 384 (666)
. ++-|+-+.+.+.-+.|.
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHH
Confidence 6 45666666655444443
No 126
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.23 E-value=2.1e-10 Score=133.05 Aligned_cols=214 Identities=15% Similarity=0.224 Sum_probs=132.9
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhc-----CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~-----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
..|.......+++++.+.+...+++.+.+.-... ...+..+ +.++|+||||||||++++++|++++..++.++.
T Consensus 140 ~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 140 RMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred cccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 4455556677899999988887777766542111 1112334 679999999999999999999999999998887
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~ 282 (666)
++.. + ...|. ....++..+..+... .|+||+|||+|.+..+ .......
T Consensus 219 ~~~~---~----~~~g~----~~~~~~~~f~~a~~~------------~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 219 SDFV---E----MFVGV----GASRVRDMFEQAKKA------------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred HHhH---H----hhhcc----cHHHHHHHHHHHHhc------------CCcEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 6411 1 11111 223455556655332 3679999999976321 1112222
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
+.|+..++. ....+++| ..++.++ .|...+.|+ | -..|.|..|+..+..++|+..+....+.. +
T Consensus 276 n~lL~~mdg~~~~~~vivI-aaTN~p~----------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~ 343 (644)
T PRK10733 276 NQMLVEMDGFEGNEGIIVI-AATNRPD----------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-D 343 (644)
T ss_pred HHHHHhhhcccCCCCeeEE-EecCChh----------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-c
Confidence 222222221 12234443 3333322 233333332 2 35799999999999999998876644321 2
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHhcCC
Q 005987 359 EQIDLVAQASGG----DIRQAITSLQFSSLKQ 386 (666)
Q Consensus 359 ~~l~~Ia~~s~G----DIR~AIn~LQf~~~~~ 386 (666)
..+..|+..+.| ||...++.....+...
T Consensus 344 ~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 344 IDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 335678888888 9999999887766543
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=3.2e-10 Score=121.28 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCchhhhhhh----hc----c-
Q 005987 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTPTIWQEYM----HN----C- 224 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~~~~~e~l----~~----~- 224 (666)
...-+.+...+.. ++.+ +.+||+||+|+||+++|..+|+.+-+.--. -.+...+.....+ |. .
T Consensus 8 ~~~~~~l~~~~~~------~rl~-HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 8 RPDYEQLVGSYQA------GRGH-HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred hHHHHHHHHHHHc------CCcc-eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence 3445555555554 6777 799999999999999999999998542100 0000000000000 00 0
Q ss_pred cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCC
Q 005987 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECG 304 (666)
Q Consensus 225 ~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~ 304 (666)
..+....-.+++++++.+.+...+. .+..+|+|||+++.++.. ..++|++.++....-++||....+
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~--------~g~~kV~iI~~ae~m~~~-----AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHAR--------LGGAKVVWLPDAALLTDA-----AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccc--------cCCceEEEEcchHhhCHH-----HHHHHHHHhcCCCCCeEEEEEECC
Confidence 0000012346677777766643321 124579999999988643 334577777776544444444322
Q ss_pred CCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005987 305 KADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (666)
Q Consensus 305 ~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQ 380 (666)
..+.++.++| ||+.+.|.+++.+++...|.. ...++++.+..++..++|++..|+..++
T Consensus 148 -------~~~lLpTIrS-----RCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 148 -------PARLLATLRS-----RCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred -------hhhChHHHHh-----ccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 2345555555 699999999999999988863 2246777788889999999999987653
No 128
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9e-11 Score=116.12 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=119.1
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
-+..|+-|-+-..+++++.++--+.. .-|--|++.+|||||||||||.+++++|+.....++.++.+. ..+++
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse--fvqky 229 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE--FVQKY 229 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH--HHHHH
Confidence 56788888777777777776522111 114445589999999999999999999999999999988765 33444
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHHhc---
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRS--- 291 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~~~--- 291 (666)
+... . ...++++.-++. +.|.||+|||+|.+... .+-+.++.+|..++..
T Consensus 230 lgeg---p------rmvrdvfrlake------------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 230 LGEG---P------RMVRDVFRLAKE------------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred hccC---c------HHHHHHHHHHhc------------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 4321 1 133444433332 24679999999975321 1113345555555543
Q ss_pred ---CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-
Q 005987 292 ---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA- 365 (666)
Q Consensus 292 ---~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia- 365 (666)
+..--||++++.. +. |...|-|++ -..|.|+-++..+-+-+...|+.+..+.-+-+ ++.++
T Consensus 289 fdq~~nvkvimatnra--dt----------ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vd-le~~v~ 355 (408)
T KOG0727|consen 289 FDQTTNVKVIMATNRA--DT----------LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVD-LEDLVA 355 (408)
T ss_pred cCcccceEEEEecCcc--cc----------cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccC-HHHHhc
Confidence 2223455666532 11 222222222 24799998888777777777877765432212 23332
Q ss_pred ---HHcCCcHHHHHHHHHHHhc
Q 005987 366 ---QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 366 ---~~s~GDIR~AIn~LQf~~~ 384 (666)
..|+.||-+...-.-+.+.
T Consensus 356 rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 356 RPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred CccccchhhHHHHHHHHhHHHH
Confidence 2355666555444444443
No 129
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=7.7e-10 Score=117.39 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCchhhhhhhh----c-----
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTPTIWQEYMH----N----- 223 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~~~~~e~l~----~----- 223 (666)
+....+.+.+.+.. |+.+ +.+||+||+|+||+++|+.+|+.+.+.--. ..+...+.....+. .
T Consensus 7 ~~~~~~~l~~~~~~------~rl~-HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 7 LQPTYQQITQAFQQ------GLGH-HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred hHHHHHHHHHHHHc------CCcc-eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE
Confidence 44455566666664 6766 789999999999999999999998653210 01111111001000 0
Q ss_pred -ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEec
Q 005987 224 -CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTE 302 (666)
Q Consensus 224 -~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~ 302 (666)
...|. .-.+++++++.+.+...+. .+..+|+|||+++.++.. ..++|++.++.....++||+..
T Consensus 80 ~p~~~~--~I~id~iR~l~~~~~~~~~--------~g~~KV~iI~~a~~m~~~-----AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 80 EPIDNK--DIGVDQVREINEKVSQHAQ--------QGGNKVVYIQGAERLTEA-----AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred ccccCC--CCCHHHHHHHHHHHhhccc--------cCCceEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEEE
Confidence 00111 1246677777766643321 124579999999998643 3345777777766555555544
Q ss_pred CCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 303 ~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
.+ ..+.++.+++ ||+.+.|+|++.+++...|.... ..++..+..++..++|.+-.|+..+
T Consensus 145 ~~-------~~~llpTI~S-----RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~ 204 (325)
T PRK06871 145 DL-------SAALLPTIYS-----RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFL 204 (325)
T ss_pred CC-------hHhCchHHHh-----hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHh
Confidence 22 2344555554 69999999999999999998753 2344456677788999987776543
No 130
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.21 E-value=1.6e-10 Score=135.21 Aligned_cols=209 Identities=16% Similarity=0.222 Sum_probs=135.7
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCcE
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARL 206 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~v 206 (666)
..++++-+--.++.++|+++.++++...|.... ++.+||+||||||||++|+.+|..+ +..+
T Consensus 174 ~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~--------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~ 245 (758)
T PRK11034 174 TNLNQLARVGGIDPLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_pred HhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE
Confidence 345666677888999999999999999887621 1467899999999999999999875 2222
Q ss_pred EEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh----HHHHH
Q 005987 207 YEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----AFERL 281 (666)
Q Consensus 207 iE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~----~~~~l 281 (666)
+..+. .....|..|. .....++.++..+... .+.||+|||++.+.+.. ....+
T Consensus 246 ~~l~~----------~~llaG~~~~Ge~e~rl~~l~~~l~~~------------~~~ILfIDEIh~L~g~g~~~~g~~d~ 303 (758)
T PRK11034 246 YSLDI----------GSLLAGTKYRGDFEKRFKALLKQLEQD------------TNSILFIDEIHTIIGAGAASGGQVDA 303 (758)
T ss_pred EeccH----------HHHhcccchhhhHHHHHHHHHHHHHhc------------CCCEEEeccHHHHhccCCCCCcHHHH
Confidence 22221 1111233222 2223455555555432 24599999999763211 11234
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCCC
Q 005987 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLS 357 (666)
Q Consensus 282 ~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v~ 357 (666)
.++|..++..++ +.+ ++.++.. .+.+.+. +.+.|.| |+..|.+.+|+.++..++|+.+... .++.++
T Consensus 304 ~nlLkp~L~~g~--i~v-IgATt~~----E~~~~~~-~D~AL~r-RFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~ 374 (758)
T PRK11034 304 ANLIKPLLSSGK--IRV-IGSTTYQ----EFSNIFE-KDRALAR-RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYT 374 (758)
T ss_pred HHHHHHHHhCCC--eEE-EecCChH----HHHHHhh-ccHHHHh-hCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcC
Confidence 455777777664 333 3333321 1122222 3344444 6789999999999999999987653 468899
Q ss_pred HHHHHHHHHHcCCcH------HHHHHHHHHHhc
Q 005987 358 TEQIDLVAQASGGDI------RQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~~s~GDI------R~AIn~LQf~~~ 384 (666)
++++..++..+..-| .+||..|.-+|.
T Consensus 375 ~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 375 AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 999999998876543 389999988775
No 131
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.4e-10 Score=121.07 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhh----hc------
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYM----HN------ 223 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l----~~------ 223 (666)
+....+.+...+.. ++.+ +.+||+||+|+||+++|..+|+.+.+.-. .....+.....+ |.
T Consensus 9 ~~~~~~~l~~~~~~------~rl~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~--~~~~~c~~c~~~~~g~HPD~~~i~ 79 (319)
T PRK08769 9 QQRAYDQTVAALDA------GRLG-HGLLICGPEGLGKRAVALALAEHVLASGP--DPAAAQRTRQLIAAGTHPDLQLVS 79 (319)
T ss_pred HHHHHHHHHHHHHc------CCcc-eeEeeECCCCCCHHHHHHHHHHHHhCCCC--CCCCcchHHHHHhcCCCCCEEEEe
Confidence 55666777776665 7777 78999999999999999999999855310 000000000000 00
Q ss_pred --c-cCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCc-eE
Q 005987 224 --C-KTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TA 297 (666)
Q Consensus 224 --~-~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~P-iV 297 (666)
. ..|.. ..-.+++++++.+.+...+. .+..+|+|||+++.++.. ..++|++.++..... ++
T Consensus 80 ~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~--------~g~~kV~iI~~ae~m~~~-----AaNaLLKtLEEPp~~~~f 146 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQ--------YGIAQVVIVDPADAINRA-----ACNALLKTLEEPSPGRYL 146 (319)
T ss_pred cCCCcccccccccccHHHHHHHHHHHhhCcc--------cCCcEEEEeccHhhhCHH-----HHHHHHHHhhCCCCCCeE
Confidence 0 01110 01235566666655532211 123579999999988643 234566666765433 34
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
|++++ ...+.++.|++ ||..|.|.+++.+++...|.. .+ +++.....++..++|.+..|+.
T Consensus 147 iL~~~--------~~~~lLpTIrS-----RCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 147 WLISA--------QPARLPATIRS-----RCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EEEEC--------ChhhCchHHHh-----hheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHH
Confidence 44444 12345556665 699999999999999988864 23 5666667788999999998876
Q ss_pred HH
Q 005987 378 SL 379 (666)
Q Consensus 378 ~L 379 (666)
.+
T Consensus 208 ~~ 209 (319)
T PRK08769 208 WL 209 (319)
T ss_pred Hh
Confidence 54
No 132
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.6e-10 Score=123.64 Aligned_cols=218 Identities=21% Similarity=0.316 Sum_probs=136.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~n 210 (666)
++.....|+|.++ .|++.....|+.|+..++.. +-+ ..+.++|.||+|||.+...+-..+ ...++.+|
T Consensus 140 ~~~l~~t~~p~~l---~gRe~e~~~v~~F~~~hle~---~t~-gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in 212 (529)
T KOG2227|consen 140 SESLLNTAPPGTL---KGRELEMDIVREFFSLHLEL---NTS-GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN 212 (529)
T ss_pred HHHHHhcCCCCCc---cchHHHHHHHHHHHHhhhhc---ccC-cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe
Confidence 4557778888776 99999999999999988763 222 589999999999999998776666 34557777
Q ss_pred CCCc----hhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHH
Q 005987 211 TPTP----TIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (666)
Q Consensus 211 asd~----~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L 285 (666)
+..- ..+.........+... ....+....|...... .+...||++||+|.+..+. +.+|
T Consensus 213 c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q-----------~k~~~llVlDEmD~L~tr~-----~~vL 276 (529)
T KOG2227|consen 213 CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ-----------SKFMLLLVLDEMDHLITRS-----QTVL 276 (529)
T ss_pred eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc-----------ccceEEEEechhhHHhhcc-----ccee
Confidence 7641 2232222221000000 0111111222222111 1246799999999875432 2234
Q ss_pred HHHHhcCCCc--eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHH
Q 005987 286 LLLVRSTHIP--TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQID 362 (666)
Q Consensus 286 ~~l~~~~~~P--iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~-v~~~~l~ 362 (666)
+.+.+-...| .+++|+-.+ +.|...|.|..|...+. .....+.|.|++.++|.++|+..+..+... +-+.+++
T Consensus 277 y~lFewp~lp~sr~iLiGiAN---slDlTdR~LprL~~~~~-~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie 352 (529)
T KOG2227|consen 277 YTLFEWPKLPNSRIILIGIAN---SLDLTDRFLPRLNLDLT-IKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIE 352 (529)
T ss_pred eeehhcccCCcceeeeeeehh---hhhHHHHHhhhhhhccC-CCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHH
Confidence 4444333332 122222211 34566777777665322 235679999999999999999998877643 4456888
Q ss_pred HHHHH---cCCcHHHHHHHHH
Q 005987 363 LVAQA---SGGDIRQAITSLQ 380 (666)
Q Consensus 363 ~Ia~~---s~GDIR~AIn~LQ 380 (666)
.+|.. ..||+|.|+...+
T Consensus 353 ~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 353 LCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHhccCchhHHHHHHHHH
Confidence 88865 4699999998876
No 133
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.19 E-value=6.2e-10 Score=115.42 Aligned_cols=111 Identities=17% Similarity=0.293 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCC--ccch-hhhhhHHHHHHhhcCeeEEEeCCCC
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADS--VDST-AQSFEELQSILVDAGARKVALNPIT 337 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s--~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s 337 (666)
|-||||||++.++-. .|. .|...+++.-.|+|++++|.+.... .|.. .+-++ ..+|. |..+|.-.|++
T Consensus 292 pGVLFIDEvHmLDIE-~Fs----FlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP--~DlLD--RllII~t~py~ 362 (450)
T COG1224 292 PGVLFIDEVHMLDIE-CFS----FLNRALESELAPIIILATNRGMTKIRGTDIESPHGIP--LDLLD--RLLIISTRPYS 362 (450)
T ss_pred cceEEEechhhhhHH-HHH----HHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCC--Hhhhh--heeEEecCCCC
Confidence 569999999987532 232 3556667777899999998754321 1111 12221 34555 48899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 005987 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQ 380 (666)
Q Consensus 338 ~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-s~GDIR~AIn~LQ 380 (666)
.++++.+|+..|..+++.+++++++.++.. ..-.+|.|++.|.
T Consensus 363 ~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~ 406 (450)
T COG1224 363 REEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLT 406 (450)
T ss_pred HHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhcc
Confidence 999999999999999999999999999987 3467999998886
No 134
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-10 Score=114.64 Aligned_cols=183 Identities=17% Similarity=0.255 Sum_probs=116.4
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+.+.++|-.-.+.+=+-|-++.++++++.++--.+. .-|-..++.+|||||||+|||.+|+++|.+..+.++.+.
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 456778877777766777889999999988732221 114444588999999999999999999999999999988
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~ 284 (666)
.+. ..++++... ....++++-.++.. .|.||++||+|.+... ..-..++..
T Consensus 214 gse--lvqk~igeg---------srmvrelfvmareh------------apsiifmdeidsigs~r~e~~~ggdsevqrt 270 (404)
T KOG0728|consen 214 GSE--LVQKYIGEG---------SRMVRELFVMAREH------------APSIIFMDEIDSIGSSRVESGSGGDSEVQRT 270 (404)
T ss_pred hHH--HHHHHhhhh---------HHHHHHHHHHHHhc------------CCceEeeecccccccccccCCCCccHHHHHH
Confidence 764 233333221 11234444444433 3679999999975321 111234444
Q ss_pred HHHHHh------cCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhC
Q 005987 285 LLLLVR------STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQ 353 (666)
Q Consensus 285 L~~l~~------~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~ 353 (666)
++.++. .++.--||++++. ++-|.+.|-|++ -..|.|+||+......+|+-...+.+
T Consensus 271 mlellnqldgfeatknikvimatnr------------idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 271 MLELLNQLDGFEATKNIKVIMATNR------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred HHHHHHhccccccccceEEEEeccc------------cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 444443 3444455666652 222333333332 34699999999999999887665543
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.16 E-value=9.5e-10 Score=130.93 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=128.0
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCC-CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhh---hhhh
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW---QEYM 221 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~-g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~---~e~l 221 (666)
..|+||+..++.|..++.....+.. ..-|...+||+||||||||.+|++||+.+ .-.++.++.++.... ...+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 4578999999999999986543211 11222469999999999999999999998 335677775532110 0111
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC---------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--------- 292 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~--------- 292 (666)
......+.|. ....+.+.+ ++ ++..||+|||++..+. .+.+.|..+++.+
T Consensus 646 g~~~gyvg~~-~~g~L~~~v---~~------------~p~svvllDEieka~~-----~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 646 GSPPGYVGYG-EGGVLTEAV---RR------------KPYSVVLLDEVEKAHP-----DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred CCCCCccccc-ccchHHHHH---Hh------------CCCcEEEEechhhcCH-----HHHHHHHHHhhcceeecCCCcE
Confidence 1110011111 111222222 21 1345999999986643 2344566666554
Q ss_pred ---CCceEEEEecCCCCCC----ccc---------hhhhhhHH-----HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 293 ---HIPTAVVLTECGKADS----VDS---------TAQSFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 293 ---~~PiViIit~~~~~~s----~d~---------~~r~l~~L-----~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
+..+||++++...... .+. .......+ +++++ |+.+|.|+|++.+++.+++...+..
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMTVIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--ceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3356666666432110 000 00000111 24444 4789999999999999998876643
Q ss_pred ------h--C--CCCCHHHHHHHHHHcCC---cHHHHHHHHHHHh
Q 005987 352 ------E--Q--YSLSTEQIDLVAQASGG---DIRQAITSLQFSS 383 (666)
Q Consensus 352 ------e--~--i~v~~~~l~~Ia~~s~G---DIR~AIn~LQf~~ 383 (666)
+ + +.+++++++.|++.+.+ +.|...+.||-.-
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 3 45799999999999877 7898888887643
No 136
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-10 Score=114.42 Aligned_cols=191 Identities=14% Similarity=0.186 Sum_probs=111.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcC----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
.++|++|-+...+.|++.+---++- ..++.|-+.+||+||||+||+.+|+++|-+.+-.++.+..+| ...+.+.
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD--LvSKWmG 208 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD--LVSKWMG 208 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH--HHHHHhc
Confidence 4578899988888888765321110 113344578999999999999999999999998888888776 2233332
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc------hhHHHHHHHHHHHHHhc-CC-C
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG------RTAFERLRQCLLLLVRS-TH-I 294 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~------~~~~~~l~~~L~~l~~~-~~-~ 294 (666)
. .....+++++.++. ++|.||+|||+|.+.+ ..+.+++...++--++. +. .
T Consensus 209 E---------SEkLVknLFemARe------------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 209 E---------SEKLVKNLFEMARE------------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred c---------HHHHHHHHHHHHHh------------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 2 22334555665543 2577999999997643 23445555333322222 11 1
Q ss_pred ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 005987 295 PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (666)
Q Consensus 295 PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G 370 (666)
--|++++.++.+- .|.+.++|+.-..|.++-|.........+-.+-.-...+++..+..|+..+.|
T Consensus 268 ~gvLVLgATNiPw----------~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 268 DGVLVLGATNIPW----------VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred CceEEEecCCCch----------hHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 2355566665442 24455555334456666555443333322222222234566666677666544
No 137
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.15 E-value=1.3e-09 Score=127.65 Aligned_cols=204 Identities=18% Similarity=0.257 Sum_probs=121.5
Q ss_pred ccccCHHHHHHHHHHHHHhhcCC--CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh---hhhhhhcc
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDS--KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI---WQEYMHNC 224 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~--~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~---~~e~l~~~ 224 (666)
.++||++.++.|..++..+..+. ++++ ...+||+||||||||++|++||+.++..++.++.+.... ....+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp-~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKP-VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCC-cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 37899999999999998664321 1222 247999999999999999999999999999888765221 11111111
Q ss_pred cCC-ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC-----------
Q 005987 225 KTG-LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST----------- 292 (666)
Q Consensus 225 ~~g-~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~----------- 292 (666)
.| ..+ .....+.+.+ .. ++..||++||++.++. .+++.|+.+++.+
T Consensus 538 -~gyvg~-~~~g~L~~~v---~~------------~p~sVlllDEieka~~-----~v~~~LLq~ld~G~ltd~~g~~vd 595 (758)
T PRK11034 538 -PGYVGF-DQGGLLTDAV---IK------------HPHAVLLLDEIEKAHP-----DVFNLLLQVMDNGTLTDNNGRKAD 595 (758)
T ss_pred -CCcccc-cccchHHHHH---Hh------------CCCcEEEeccHhhhhH-----HHHHHHHHHHhcCeeecCCCceec
Confidence 11 111 0111122211 11 1246999999998753 3445566666543
Q ss_pred -CCceEEEEecCCCCC----C-----ccchhhhhhHH-----HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH------
Q 005987 293 -HIPTAVVLTECGKAD----S-----VDSTAQSFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ------ 351 (666)
Q Consensus 293 -~~PiViIit~~~~~~----s-----~d~~~r~l~~L-----~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~------ 351 (666)
+..+||++++.+... . .+.....+..+ ++++.| --.+|.|+|++.+++.+++...+..
T Consensus 596 ~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~R-id~ii~f~~L~~~~l~~I~~~~l~~~~~~l~ 674 (758)
T PRK11034 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR-LDNIIWFDHLSTDVIHQVVDKFIVELQAQLD 674 (758)
T ss_pred CCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHcc-CCEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223455555532110 0 00000011111 344444 2358999999999999998876643
Q ss_pred -hC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 005987 352 -EQ--YSLSTEQIDLVAQAS------GGDIRQAIT 377 (666)
Q Consensus 352 -e~--i~v~~~~l~~Ia~~s------~GDIR~AIn 377 (666)
.+ +.+++++++.|++.. ...+|++|.
T Consensus 675 ~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 675 QKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 23 457899999999763 245666664
No 138
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=4.1e-09 Score=109.41 Aligned_cols=178 Identities=20% Similarity=0.258 Sum_probs=97.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC-cEE--EEcCCCchhhhhhhhc--ccCCccc--cchh---HHHHHHHHHHHhhc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA-RLY--EWDTPTPTIWQEYMHN--CKTGLEY--TSKL---DEFENFVERIRRYG 248 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~-~vi--E~nasd~~~~~e~l~~--~~~g~~~--~s~~---~~f~~fl~~a~~~~ 248 (666)
..++|+||+|+||||+++.+++++.. .++ .+..+.. ...+.+.. ...|... .... ..+..++.....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~-~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~-- 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRV-DAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA-- 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCC-CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh--
Confidence 47999999999999999999999853 222 2211111 11111110 0112221 1111 223333322211
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceE-EEEecCCCCCCccchhhhhh--HHHHHHhh
Q 005987 249 STSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA-VVLTECGKADSVDSTAQSFE--ELQSILVD 325 (666)
Q Consensus 249 ~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiV-iIit~~~~~~s~d~~~r~l~--~L~s~L~r 325 (666)
.+.+.+|+|||++.+... ..+.+.. |..+.......+. ++++... ....+. .+..+.+|
T Consensus 121 ---------~~~~~vliiDe~~~l~~~-~~~~l~~-l~~~~~~~~~~~~vvl~g~~~-------~~~~l~~~~~~~l~~r 182 (269)
T TIGR03015 121 ---------AGKRALLVVDEAQNLTPE-LLEELRM-LSNFQTDNAKLLQIFLVGQPE-------FRETLQSPQLQQLRQR 182 (269)
T ss_pred ---------CCCCeEEEEECcccCCHH-HHHHHHH-HhCcccCCCCeEEEEEcCCHH-------HHHHHcCchhHHHHhh
Confidence 123569999999987532 2332221 2222111122222 3333211 011110 11222222
Q ss_pred cCeeEEEeCCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 326 AGARKVALNPITNGSIKRTLSKICRQEQ----YSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 326 ~r~~~I~F~p~s~~~i~kiL~~I~~~e~----i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
-+..+.+.+++.+++.+++...+...+ ..+++++++.|++.|+|+.|. ||.+
T Consensus 183 -~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l 238 (269)
T TIGR03015 183 -IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INIL 238 (269)
T ss_pred -eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHH
Confidence 266889999999999999999887654 468999999999999999998 4443
No 139
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.13 E-value=2.9e-10 Score=138.39 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=110.7
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh--hhhhcc-cCC----------------cc-------
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ--EYMHNC-KTG----------------LE------- 229 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~--e~l~~~-~~g----------------~~------- 229 (666)
.+++.+||+||||||||.+|++||.+.+..++.+..++-..-. .++... ..| ..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 3458999999999999999999999999999998876521100 000000 000 00
Q ss_pred ----ccchhH--HHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC----CCceEEE
Q 005987 230 ----YTSKLD--EFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST----HIPTAVV 299 (666)
Q Consensus 230 ----~~s~~~--~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~----~~PiViI 299 (666)
...... .++..++.|++. .|+||+|||+|.+...+........|...+... ...-|++
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~------------SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAM------------SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHC------------CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEE
Confidence 001111 245566666554 389999999998865422111122333333311 1123455
Q ss_pred EecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHc----CCc
Q 005987 300 LTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTE--QIDLVAQAS----GGD 371 (666)
Q Consensus 300 it~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~--~l~~Ia~~s----~GD 371 (666)
+++++.++.. .+.|.|+ .-..|.+..|+..+.++++...+...++.+.++ .++.+|..+ +.|
T Consensus 1776 IAATNRPD~L----------DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1776 IASTHIPQKV----------DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred EEeCCCcccC----------CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 5666655433 3333332 245789998888777777765554455555433 367888875 558
Q ss_pred HHHHHHHHHHHhcCC
Q 005987 372 IRQAITSLQFSSLKQ 386 (666)
Q Consensus 372 IR~AIn~LQf~~~~~ 386 (666)
+...+|-.-..|...
T Consensus 1846 LanLvNEAaliAirq 1860 (2281)
T CHL00206 1846 LVALTNEALSISITQ 1860 (2281)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888877655555443
No 140
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-09 Score=121.42 Aligned_cols=204 Identities=16% Similarity=0.252 Sum_probs=127.7
Q ss_pred CccccccCHHHHHHHHHHHHHh------hcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEER------LGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~------~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
.++|+.|-....+-|.+.++-- +...+-+.+ ..+|||||||||||.+|.++|...+..++.+..|. ...++
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE--lL~Ky 741 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE--LLSKY 741 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH--HHHHH
Confidence 3456666544444444444311 111223344 57999999999999999999999999999998875 33333
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHHHhcCC-
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRSTH- 293 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~~~- 293 (666)
+++ .....++++++++.. +|+|+++||+|.+..+. -..++.+.|+.-++...
T Consensus 742 IGa---------SEq~vR~lF~rA~~a------------~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 742 IGA---------SEQNVRDLFERAQSA------------KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred hcc---------cHHHHHHHHHHhhcc------------CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc
Confidence 332 234567788887533 58999999999874321 12344433333333221
Q ss_pred CceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----
Q 005987 294 IPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA---- 367 (666)
Q Consensus 294 ~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~---- 367 (666)
.--|+|++.+..++..| +.|-|++ -..|..+.|++.+...+|+.+...... -++..++.+|..
T Consensus 801 l~GV~i~aaTsRpdliD----------pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~ 869 (952)
T KOG0735|consen 801 LDGVYILAATSRPDLID----------PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGF 869 (952)
T ss_pred cceEEEEEecCCccccC----------HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCC
Confidence 23355555555544333 2232332 345788899999999998877654322 234557778876
Q ss_pred cCCcHHHHHHHHHHHhcC
Q 005987 368 SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~~ 385 (666)
++.|+...+-+.|+++..
T Consensus 870 tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 870 TGADLQSLLYNAQLAAVH 887 (952)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 456999999999998753
No 141
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.13 E-value=1.1e-09 Score=128.90 Aligned_cols=210 Identities=13% Similarity=0.163 Sum_probs=123.6
Q ss_pred CCccccccCCCCc----------cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 136 QQLWAEKYKPRSL----------EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 136 ~~~W~eKY~P~sl----------~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
+.+| .+|.+.++ ++..|.++..++|.+|+...... +.....+++|+|||||||||+++.+|+.++..
T Consensus 300 ~~pw-~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~--~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 300 QVPW-NARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV--NKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hCCC-CCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc--ccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678 44565544 23778999999999998854322 22233589999999999999999999999999
Q ss_pred EEEEcCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHH
Q 005987 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (666)
Q Consensus 206 viE~nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~ 284 (666)
++.++....+...+..... ..| ......+ +......+ . ...||||||+|.+..... +...++
T Consensus 377 ~~~i~~~~~~d~~~i~g~~---~~~~g~~~G~~---~~~l~~~~---------~-~~~villDEidk~~~~~~-g~~~~a 439 (784)
T PRK10787 377 YVRMALGGVRDEAEIRGHR---RTYIGSMPGKL---IQKMAKVG---------V-KNPLFLLDEIDKMSSDMR-GDPASA 439 (784)
T ss_pred EEEEEcCCCCCHHHhccch---hccCCCCCcHH---HHHHHhcC---------C-CCCEEEEEChhhcccccC-CCHHHH
Confidence 8888755422211111000 000 0111111 11111111 1 124899999998754311 112334
Q ss_pred HHHHHhcCC---------------CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHH
Q 005987 285 LLLLVRSTH---------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC 349 (666)
Q Consensus 285 L~~l~~~~~---------------~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~ 349 (666)
|+.+++..+ ..+++|+|+ +.. . + ..+++. |+..|.|.+++.+++.++.++.+
T Consensus 440 Llevld~~~~~~~~d~~~~~~~dls~v~~i~Ta-N~~-------~-i--~~aLl~--R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 440 LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS-NSM-------N-I--PAPLLD--RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHHHhccccEEEEecccccccccCCceEEEEcC-CCC-------C-C--CHHHhc--ceeeeecCCCCHHHHHHHHHHhh
Confidence 555554311 124555543 211 1 1 133333 58999999999999999987776
Q ss_pred HH----------hCCCCCHHHHHHHHHHcC-----CcHHHHHHH
Q 005987 350 RQ----------EQYSLSTEQIDLVAQASG-----GDIRQAITS 378 (666)
Q Consensus 350 ~~----------e~i~v~~~~l~~Ia~~s~-----GDIR~AIn~ 378 (666)
.. ..+.+++++++.|++.+. ..+++.|..
T Consensus 507 ~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~ 550 (784)
T PRK10787 507 LPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISK 550 (784)
T ss_pred hHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHH
Confidence 31 125689999999997532 345555544
No 142
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.12 E-value=1.8e-09 Score=120.50 Aligned_cols=213 Identities=19% Similarity=0.292 Sum_probs=135.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCcEEEEcCCC
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYEWDTPT 213 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~viE~nasd 213 (666)
.|.++ .+++....+|..+++..+.. .+. ...+.++|-||+|||.+|+.+-++| .+.++|+|+.-
T Consensus 394 vp~sL---pcRe~E~~~I~~f~~~~i~~-~~~--g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 394 VPESL---PCRENEFSEIEDFLRSFISD-QGL--GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccc---cchhHHHHHHHHHHHhhcCC-CCC--ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 55554 78999999999999987764 122 2489999999999999999999977 47889999764
Q ss_pred ch---hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh
Q 005987 214 PT---IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (666)
Q Consensus 214 ~~---~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~ 290 (666)
-. ...+.+.....|...... .-++-...+-. ..+..+.++||||||+|.+-++ -+++|+.+.+
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~-----~al~~L~~~f~----~~k~~~~~~VvLiDElD~Lvtr-----~QdVlYn~fd 533 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWD-----AALEALNFRFT----VPKPKRSTTVVLIDELDILVTR-----SQDVLYNIFD 533 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHH-----HHHHHHHHhhc----cCCCCCCCEEEEeccHHHHhcc-----cHHHHHHHhc
Confidence 22 222333333334332110 01111111111 1233456789999999987543 2345666554
Q ss_pred cCC---Cc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 005987 291 STH---IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (666)
Q Consensus 291 ~~~---~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~ 366 (666)
=.. .. +||.++++ +|...+.+.. ..-+|.+...|.|+|++.+++.+++...+..- -.+..++++.++.
T Consensus 534 Wpt~~~sKLvvi~IaNT-----mdlPEr~l~n--rvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvar 605 (767)
T KOG1514|consen 534 WPTLKNSKLVVIAIANT-----MDLPERLLMN--RVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVAR 605 (767)
T ss_pred CCcCCCCceEEEEeccc-----ccCHHHHhcc--chhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHH
Confidence 322 22 33334442 3344454431 12234578999999999999999988776544 3467778777775
Q ss_pred H---cCCcHHHHHHHHHHHhc
Q 005987 367 A---SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ~---s~GDIR~AIn~LQf~~~ 384 (666)
. -.||.|+|+....-++.
T Consensus 606 kVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 606 KVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHHhccccHHHHHHHHHHHHH
Confidence 4 45999999998877764
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.11 E-value=2.4e-09 Score=126.37 Aligned_cols=206 Identities=15% Similarity=0.260 Sum_probs=121.3
Q ss_pred ccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh---hhhhhhcc
Q 005987 150 ELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI---WQEYMHNC 224 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~---~~e~l~~~ 224 (666)
.++||+..++.|..++...... .++++ ...+||+||||||||++|++||+.++..++.++.+.... ....+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p-~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKP-VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCC-ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 4789999999999998854321 11222 246999999999999999999999999999888765221 01111111
Q ss_pred cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC------------
Q 005987 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST------------ 292 (666)
Q Consensus 225 ~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~------------ 292 (666)
...+.+ .....+. +.++. ++..||+|||++.++. .+++.|+.+++.+
T Consensus 534 ~gyvg~-~~~~~l~---~~~~~------------~p~~VvllDEieka~~-----~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 534 PGYVGF-EQGGLLT---EAVRK------------HPHCVLLLDEIEKAHP-----DIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred CCCccc-chhhHHH---HHHHh------------CCCeEEEEechhhcCH-----HHHHHHHHhhccCeeecCCCcccCC
Confidence 111111 1111222 22221 1346999999998753 2444566666543
Q ss_pred CCceEEEEecCCCCC----Cccchhh-----hhhHH-----HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh------
Q 005987 293 HIPTAVVLTECGKAD----SVDSTAQ-----SFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQE------ 352 (666)
Q Consensus 293 ~~PiViIit~~~~~~----s~d~~~r-----~l~~L-----~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e------ 352 (666)
+..+||++++.+... ..+.... ....+ ++++.| --.+|.|+|++.+++.+++.+.+...
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~R-id~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNR-LDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhc-CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 123444444432110 0000000 00111 233443 23689999999999999999887631
Q ss_pred ---CCCCCHHHHHHHHHHc------CCcHHHHHHH
Q 005987 353 ---QYSLSTEQIDLVAQAS------GGDIRQAITS 378 (666)
Q Consensus 353 ---~i~v~~~~l~~Ia~~s------~GDIR~AIn~ 378 (666)
.+.+++++++.|++.+ ...+|++|..
T Consensus 672 ~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred CCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 2568999999999863 2345555543
No 144
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.10 E-value=1.1e-09 Score=105.25 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=82.9
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh----c-----
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH----N----- 223 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~----~----- 223 (666)
||++.++.+...++. ++.+ +.+||+||+|+||+++|+.+|+.+...-..-.....+.....+. .
T Consensus 1 gq~~~~~~L~~~~~~------~~l~-ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------GRLP-HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC------TC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc------CCcc-eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 688888888888876 6777 78999999999999999999999844322100000000000000 0
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecC
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~ 303 (666)
...+....-..++++++.+.+.... .....+|++|||+|.+... .+++|++.++....-++||+...
T Consensus 74 ~~~~~~~~i~i~~ir~i~~~~~~~~--------~~~~~KviiI~~ad~l~~~-----a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIREIIEFLSLSP--------SEGKYKVIIIDEADKLTEE-----AQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp ETTTSSSSBSHHHHHHHHHHCTSS---------TTSSSEEEEEETGGGS-HH-----HHHHHHHHHHSTTTTEEEEEEES
T ss_pred ecccccchhhHHHHHHHHHHHHHHH--------hcCCceEEEeehHhhhhHH-----HHHHHHHHhcCCCCCEEEEEEEC
Confidence 0001100223556666655442111 1124679999999988643 34567777777654344443332
Q ss_pred CCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCC
Q 005987 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (666)
Q Consensus 304 ~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s 337 (666)
...+.++.+++ ||..|+|++++
T Consensus 141 -------~~~~il~TI~S-----Rc~~i~~~~ls 162 (162)
T PF13177_consen 141 -------NPSKILPTIRS-----RCQVIRFRPLS 162 (162)
T ss_dssp --------GGGS-HHHHT-----TSEEEEE----
T ss_pred -------ChHHChHHHHh-----hceEEecCCCC
Confidence 12345555554 69999999874
No 145
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.06 E-value=5.6e-09 Score=114.50 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=48.3
Q ss_pred cccCHHHHHHHHHHHHHhhcCC--------CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDS--------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~--------~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
++||+.+++.|...+.+..... ....+...+||+||||||||++|++||+.++..++.++++.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 7899999999877764332211 01123367999999999999999999999999998887754
No 146
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-09 Score=121.13 Aligned_cols=201 Identities=15% Similarity=0.232 Sum_probs=124.2
Q ss_pred CCCccccccCHHHHHHHHHHHHHh-----hcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEER-----LGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~-----~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
-.+|.|++|.++..+++.+.+.-- +..-.++.| +.+||.||||+|||.+|+++|-+.+.....+..|+...+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiP-kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem-- 222 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-- 222 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccc-cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh--
Confidence 358999999888877766655421 111124555 889999999999999999999999999999888763222
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHHHHHHHHh
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVR 290 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~~L~~l~~ 290 (666)
..|+.. ...++.++++++. .|+||+|||+|.+... +..+ +.|.+++-
T Consensus 223 -----fVGvGA----sRVRdLF~qAkk~------------aP~IIFIDEiDAvGr~Rg~g~GggnderE---QTLNQlLv 278 (596)
T COG0465 223 -----FVGVGA----SRVRDLFEQAKKN------------APCIIFIDEIDAVGRQRGAGLGGGNDERE---QTLNQLLV 278 (596)
T ss_pred -----hcCCCc----HHHHHHHHHhhcc------------CCCeEEEehhhhcccccCCCCCCCchHHH---HHHHHHHh
Confidence 233332 2556667777654 3689999999975321 1111 22333322
Q ss_pred c-----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 291 S-----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 291 ~-----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
. +..++| ++++++.++- |.+.|.|+ +-..|....|+.....++|+-.+..-.+. ++--+..
T Consensus 279 EmDGF~~~~gvi-viaaTNRpdV----------lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~ 346 (596)
T COG0465 279 EMDGFGGNEGVI-VIAATNRPDV----------LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKK 346 (596)
T ss_pred hhccCCCCCceE-EEecCCCccc----------chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHH
Confidence 1 123454 4555554432 33333333 24578899999999999999555443333 1122334
Q ss_pred HHHH----cCCcHHHHHHHHHHHhc
Q 005987 364 VAQA----SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 364 Ia~~----s~GDIR~AIn~LQf~~~ 384 (666)
||.. ++.|+-..+|---..+.
T Consensus 347 iAr~tpGfsGAdL~nl~NEAal~aa 371 (596)
T COG0465 347 IARGTPGFSGADLANLLNEAALLAA 371 (596)
T ss_pred HhhhCCCcccchHhhhHHHHHHHHH
Confidence 6666 55677777765444443
No 147
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-09 Score=106.15 Aligned_cols=190 Identities=16% Similarity=0.258 Sum_probs=108.8
Q ss_pred CCCccccccCHHHHHHHHHHHHH------hhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEE------RLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~------~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
-.+.+|+-|-++.++++.+.+-- .+..- |-.|++.+|+|||||+|||.+|++.|.+.+..++.+..|. ..+
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~l-gi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ--LVQ 243 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENL-GIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ--LVQ 243 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhc-CCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH--HHh
Confidence 35788999999999999887641 12211 3334589999999999999999999999877666655543 111
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHHhcC
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRST 292 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~~~~ 292 (666)
-++ ..|. .-.++.+.-++ .+.|.||+|||+|.+... ..-+.++..++.++..-
T Consensus 244 MfI---GdGA------kLVRDAFaLAK------------EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL 302 (424)
T KOG0652|consen 244 MFI---GDGA------KLVRDAFALAK------------EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 302 (424)
T ss_pred hhh---cchH------HHHHHHHHHhh------------ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh
Confidence 111 1111 11222222221 245789999999976321 11123444555554431
Q ss_pred ----CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 293 ----HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 293 ----~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
..--|=++..++..+..| ..+|++-| -..|.|+-|+.+...++|+-...+..+. ++--.+.++..
T Consensus 303 DGFss~~~vKviAATNRvDiLD---------PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRs 372 (424)
T KOG0652|consen 303 DGFSSDDRVKVIAATNRVDILD---------PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARS 372 (424)
T ss_pred cCCCCccceEEEeecccccccC---------HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhc
Confidence 111233344444333222 12222212 3479999999998888887666555432 22234566655
Q ss_pred c
Q 005987 368 S 368 (666)
Q Consensus 368 s 368 (666)
+
T Consensus 373 T 373 (424)
T KOG0652|consen 373 T 373 (424)
T ss_pred c
Confidence 4
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.5e-09 Score=123.02 Aligned_cols=211 Identities=18% Similarity=0.241 Sum_probs=147.3
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
.....++.-+--.++.++|+++.++++.+.|.+..+ +.-+|.|+||+|||++|.-||..+ +.
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K--------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~ 227 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK--------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDK 227 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC--------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCC
Confidence 345577777888899999999999999999886432 467899999999999999999987 33
Q ss_pred cEEEEcCCCchhhhhhhhcccCCccccc-hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHH----H
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTS-KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF----E 279 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~s-~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~----~ 279 (666)
+++.++ +.....|..|.. ..+.++.+++.+.+. .+.||||||++.+-+...- -
T Consensus 228 ~i~sLD----------~g~LvAGakyRGeFEeRlk~vl~ev~~~------------~~vILFIDEiHtiVGAG~~~G~a~ 285 (786)
T COG0542 228 RIYSLD----------LGSLVAGAKYRGEFEERLKAVLKEVEKS------------KNVILFIDEIHTIVGAGATEGGAM 285 (786)
T ss_pred EEEEec----------HHHHhccccccCcHHHHHHHHHHHHhcC------------CCeEEEEechhhhcCCCccccccc
Confidence 344333 223345666643 344567777776532 2679999999986443221 1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCC
Q 005987 280 RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYS 355 (666)
Q Consensus 280 ~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~ 355 (666)
...+.|...+..+.. -| ++.++ ++.+.+.+++ ...|.| |++.|..+.|+.++...+|+-+..+ .++.
T Consensus 286 DAaNiLKPaLARGeL--~~-IGATT----~~EYRk~iEK-D~AL~R-RFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~ 356 (786)
T COG0542 286 DAANLLKPALARGEL--RC-IGATT----LDEYRKYIEK-DAALER-RFQKVLVDEPSVEDTIAILRGLKERYEAHHGVR 356 (786)
T ss_pred chhhhhHHHHhcCCe--EE-EEecc----HHHHHHHhhh-chHHHh-cCceeeCCCCCHHHHHHHHHHHHHHHHHccCce
Confidence 234567777777753 22 33332 2345556665 566776 7999999999999999999988765 4788
Q ss_pred CCHHHHHHHHHHcCCcH------HHHHHHHHHHhc
Q 005987 356 LSTEQIDLVAQASGGDI------RQAITSLQFSSL 384 (666)
Q Consensus 356 v~~~~l~~Ia~~s~GDI------R~AIn~LQf~~~ 384 (666)
+++++|.+.+..|..-| .+||..|.-+|.
T Consensus 357 i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 357 ITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred ecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 99999999998875433 345555554443
No 149
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.5e-10 Score=110.42 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=129.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..+-+|.-.-.+..|+-|-++.++.+++.++--+... -|--|++.+|+|||||+|||.+|+++|+..+.-++.+.
T Consensus 164 tmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 164 TMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred eEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh
Confidence 3455665555789999999999999999887433211 14445589999999999999999999999998888877
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~ 284 (666)
.|. ..++++.. .....+++++.++ .++-+||++||+|.+.+. ..-+.++..
T Consensus 244 gse--lvqkyvge---------garmvrelf~mar------------tkkaciiffdeidaiggarfddg~ggdnevqrt 300 (435)
T KOG0729|consen 244 GSE--LVQKYVGE---------GARMVRELFEMAR------------TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT 300 (435)
T ss_pred hHH--HHHHHhhh---------hHHHHHHHHHHhc------------ccceEEEEeeccccccCccccCCCCCcHHHHHH
Confidence 664 23333322 1223455555553 134589999999976431 112445656
Q ss_pred HHHHHhcC-----C-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCC-
Q 005987 285 LLLLVRST-----H-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYS- 355 (666)
Q Consensus 285 L~~l~~~~-----~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~- 355 (666)
++.++..- + .--|+++++. ++. |...|.|++ -..|.|.-|+-+-...+++-.++...+.
T Consensus 301 mleli~qldgfdprgnikvlmatnr--pdt----------ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsver 368 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGNIKVLMATNR--PDT----------LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVER 368 (435)
T ss_pred HHHHHHhccCCCCCCCeEEEeecCC--CCC----------cCHhhcCCcccccceeccCCcccccceeEEEecccccccc
Confidence 66666542 1 2234555542 222 222233322 2368888887766665555443332221
Q ss_pred -CCHHHHHHHHH-HcCCcHHHHHHHHHHHhcC
Q 005987 356 -LSTEQIDLVAQ-ASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 356 -v~~~~l~~Ia~-~s~GDIR~AIn~LQf~~~~ 385 (666)
+--+.|..|+- .++.+||+...-.-+++..
T Consensus 369 dir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 369 DIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred chhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 11233333332 2456889887776666653
No 150
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.7e-09 Score=116.75 Aligned_cols=195 Identities=18% Similarity=0.254 Sum_probs=132.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~ 218 (666)
.|-+ .++.|-...+..++..+.-.+... -|-.+++.+|+|||||||||-+++++|++.+..++.+|.+.. ..
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~pel--i~ 256 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPEL--IS 256 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHH--HH
Confidence 5555 677787887777777766433221 133445889999999999999999999999999999998751 11
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch----hH-HHHHHHHHHHHHhcCC
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----TA-FERLRQCLLLLVRSTH 293 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~----~~-~~~l~~~L~~l~~~~~ 293 (666)
.+ ...+...++..++++.++. .|.+|+|||+|.+.++ .. -.++...|+.+++.-.
T Consensus 257 k~---------~gEte~~LR~~f~~a~k~~-----------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 257 KF---------PGETESNLRKAFAEALKFQ-----------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK 316 (693)
T ss_pred hc---------ccchHHHHHHHHHHHhccC-----------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence 11 1234456777778776553 2679999999987542 11 2344444666655432
Q ss_pred -CceEEEEecCCCCCCccchhhhhhHHHHHHhh-cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 005987 294 -IPTAVVLTECGKADSVDSTAQSFEELQSILVD-AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (666)
Q Consensus 294 -~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r-~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GD 371 (666)
..-+|++..++.+++.|. .++| +.-..+.+.-|+.+....+|+.+++..+.. ++..+..|+..+.|-
T Consensus 317 ~~~~vivl~atnrp~sld~----------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGy 385 (693)
T KOG0730|consen 317 PDAKVIVLAATNRPDSLDP----------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGY 385 (693)
T ss_pred CcCcEEEEEecCCccccCh----------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccch
Confidence 234555555555554332 2331 124578999999999999999999887765 678888999887775
Q ss_pred H
Q 005987 372 I 372 (666)
Q Consensus 372 I 372 (666)
+
T Consensus 386 v 386 (693)
T KOG0730|consen 386 V 386 (693)
T ss_pred h
Confidence 4
No 151
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.1e-10 Score=112.95 Aligned_cols=212 Identities=17% Similarity=0.285 Sum_probs=128.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+.+=+||-.-.+++|+-|-+..++++++.++--+... -|--|++.++|||+||+|||.+|+++|++....++.+-
T Consensus 172 ~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvv 251 (440)
T KOG0726|consen 172 SVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVV 251 (440)
T ss_pred eeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhh
Confidence 4567788888999999999999999999876332211 13344589999999999999999999999877766655
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~ 284 (666)
.++ ..++++.. | ....++++.-+..+ .|.|+||||+|.+.+. ..-+.++..
T Consensus 252 Gse--LiQkylGd---G------pklvRqlF~vA~e~------------apSIvFiDEIdAiGtKRyds~SggerEiQrt 308 (440)
T KOG0726|consen 252 GSE--LIQKYLGD---G------PKLVRELFRVAEEH------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRT 308 (440)
T ss_pred hHH--HHHHHhcc---c------hHHHHHHHHHHHhc------------CCceEEeehhhhhccccccCCCccHHHHHHH
Confidence 443 22333322 1 12344555555433 3679999999965321 122345555
Q ss_pred HHHHHhc-----CCCc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCe--eEEEeCCCCHHHHHHHHHHHHHHhCCCC
Q 005987 285 LLLLVRS-----THIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGA--RKVALNPITNGSIKRTLSKICRQEQYSL 356 (666)
Q Consensus 285 L~~l~~~-----~~~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~--~~I~F~p~s~~~i~kiL~~I~~~e~i~v 356 (666)
++.++.. ++.- -||++++ .++.|...|-|+++ ..|.|.-|+...-++++.-...+ ..+
T Consensus 309 mLELLNQldGFdsrgDvKvimATn------------rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl 374 (440)
T KOG0726|consen 309 MLELLNQLDGFDSRGDVKVIMATN------------RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTL 374 (440)
T ss_pred HHHHHHhccCccccCCeEEEEecc------------cccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cch
Confidence 6665543 2222 3455554 23335555555543 36899988877766665432222 122
Q ss_pred CHH-HHHHHH----HHcCCcHHHHHHHHHHHhc
Q 005987 357 STE-QIDLVA----QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 357 ~~~-~l~~Ia----~~s~GDIR~AIn~LQf~~~ 384 (666)
.++ .++.++ +.|+.||.....-.-++|+
T Consensus 375 ~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 375 AEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred hccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 211 133333 3477777766555555554
No 152
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.03 E-value=3.7e-09 Score=111.37 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=113.2
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
|.|..-.+.+.++.....|..|+.. + +.+||.||||||||++++.+|+.+++.++.++........+.+.
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~------~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY------D----RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc------C----CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCC
Confidence 4455555677888888888887753 1 47999999999999999999999999999998765332222222
Q ss_pred cccCCccccchhHHHH-HHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHH---H-H-hcC----
Q 005987 223 NCKTGLEYTSKLDEFE-NFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL---L-V-RST---- 292 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~-~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~---l-~-~~~---- 292 (666)
.....+.-......|+ ..+..+ ...+.++|+||++..... ....++.+|.. + + +.+
T Consensus 109 ~~~~~l~~g~~~~~f~~GpL~~A-------------~~~g~illlDEin~a~p~-~~~~L~~lLE~~~~l~i~~~~~~i~ 174 (327)
T TIGR01650 109 KDAIVLKDGKQITEFRDGILPWA-------------LQHNVALCFDEYDAGRPD-VMFVIQRVLEAGGKLTLLDQNRVIR 174 (327)
T ss_pred CceeeccCCcceeEEecCcchhH-------------HhCCeEEEechhhccCHH-HHHHHHHHhccCCeEEECCCceEec
Confidence 1100000000000010 011111 123568999999976543 22333333321 0 0 111
Q ss_pred CCceEEEEecCCCCCCccc---hhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 293 HIPTAVVLTECGKADSVDS---TAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~---~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
..|-+.++.+.|..++.|. +.-....-.+.+.| .+.++.+..++.+.-.++|...+....-..+++.++.+++..
T Consensus 175 ~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDR-F~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la- 252 (327)
T TIGR01650 175 AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDR-WSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA- 252 (327)
T ss_pred CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhh-eeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH-
Confidence 1244545555554433332 11111111344444 234678999999999999887643211112356777777765
Q ss_pred CcHHHH
Q 005987 370 GDIRQA 375 (666)
Q Consensus 370 GDIR~A 375 (666)
..+|.+
T Consensus 253 ~~tR~~ 258 (327)
T TIGR01650 253 DMTRNA 258 (327)
T ss_pred HHHHhh
Confidence 555653
No 153
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.5e-08 Score=107.42 Aligned_cols=186 Identities=10% Similarity=0.120 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhc-ccCCc----
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN-CKTGL---- 228 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~-~~~g~---- 228 (666)
+....+.+...+.. ++.+ +.+||+||.|+||+++|+.+|+.+-+.-..-.+...+.....+.+ .....
T Consensus 8 l~~~~~~l~~~~~~------~rl~-hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 8 LVPVWQNWKAGLDA------GRIP-GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHHHc------CCcc-eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34445556665554 6776 789999999999999999999998553211001001110110000 00000
Q ss_pred ----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCC
Q 005987 229 ----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECG 304 (666)
Q Consensus 229 ----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~ 304 (666)
.-.-.+++++++.+.+.... ..+..+|+|||+++.++.. ..++|++.++....-++||....+
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~--------~~~~~kV~iI~~ae~m~~~-----AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESS--------QLNGYRLFVIEPADAMNES-----ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCc--------ccCCceEEEecchhhhCHH-----HHHHHHHHhcCCCCCeEEEEEECC
Confidence 00123456665554442211 1123579999999988643 334567777776544444443321
Q ss_pred CCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 305 KADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 305 ~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
..+.++.|++ ||..+.|.+++.+++...|.. +++. ....++..++|.+..|+..+
T Consensus 148 -------~~~lLpTI~S-----RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 148 -------QKRLLPTIVS-----RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred -------hhhChHHHHh-----cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHh
Confidence 2345555554 699999999999999988864 3433 23466788999999887654
No 154
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-09 Score=118.83 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=118.1
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccc
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTS 232 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s 232 (666)
|-++..++|.++|.=. .-+|...+++|.|+||||+|||++++.+|+.||-+++.+.-...+...+.-.... ..+..
T Consensus 415 gm~dVKeRILEfiAV~--kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR--TYVGA 490 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVG--KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR--TYVGA 490 (906)
T ss_pred chHHHHHHHHHHHHHH--hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce--eeecc
Confidence 4567777888887532 2235666689999999999999999999999999988876433222222111100 11112
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC----------CCc-----eE
Q 005987 233 KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST----------HIP-----TA 297 (666)
Q Consensus 233 ~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~----------~~P-----iV 297 (666)
....+-+-+.++ +. ...++||||+|.+... ..+.-..+|+.+++.. ..| ++
T Consensus 491 MPGkiIq~LK~v---~t----------~NPliLiDEvDKlG~g-~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 491 MPGKIIQCLKKV---KT----------ENPLILIDEVDKLGSG-HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred CChHHHHHHHhh---CC----------CCceEEeehhhhhCCC-CCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 222333333332 21 1238999999976421 1111122343333221 112 56
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----------hCCCCCHHHHHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----------EQYSLSTEQIDLVAQA 367 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----------e~i~v~~~~l~~Ia~~ 367 (666)
||||+-. .....++|+. |...|.+.-+..++-.++.++.+.. +.++++++++..|++.
T Consensus 557 FicTAN~-------idtIP~pLlD-----RMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 557 FICTANV-------IDTIPPPLLD-----RMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred EEEeccc-------cccCChhhhh-----hhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 6666521 1122233333 5889999999999888776665432 4577899998888866
Q ss_pred cC--CcHHHHHHHHHHHhc
Q 005987 368 SG--GDIRQAITSLQFSSL 384 (666)
Q Consensus 368 s~--GDIR~AIn~LQf~~~ 384 (666)
.. --+|+.-.+++-+|.
T Consensus 625 YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 625 YCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 21 336766666666654
No 155
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.02 E-value=1.1e-08 Score=106.12 Aligned_cols=168 Identities=11% Similarity=0.136 Sum_probs=89.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCC------C
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS------P 252 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~------~ 252 (666)
+.+||+||||||||++|+.+|+.+|..++.+++.......+.+... .+.... ..+..|+....+..... +
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSY-AGYTRK---KVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhh-cccchh---hHHHHHHHHhhhhhcccceeecCc
Confidence 4699999999999999999999999999998876533222222211 110000 11112222111110000 0
Q ss_pred CCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC----------------Cc-eEEEEecCCCCCCccchhhh
Q 005987 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------------IP-TAVVLTECGKADSVDSTAQS 315 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~----------------~P-iViIit~~~~~~s~d~~~r~ 315 (666)
........+.+|+|||++.+... .+..|..+++... .+ .||++++... +. .
T Consensus 98 ~l~~A~~~g~~lllDEi~r~~~~-----~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~-----~~--g 165 (262)
T TIGR02640 98 RLTLAVREGFTLVYDEFTRSKPE-----TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE-----YA--G 165 (262)
T ss_pred hHHHHHHcCCEEEEcchhhCCHH-----HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc-----cc--c
Confidence 00000012358999999987542 2333444443321 02 2333333211 00 0
Q ss_pred hhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 316 FEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 316 l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
...+...|.+ ||..+.+..|+.++..++|...+ .++++.++.|+...
T Consensus 166 ~~~l~~aL~~-R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~ 212 (262)
T TIGR02640 166 VHETQDALLD-RLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLV 212 (262)
T ss_pred eecccHHHHh-hcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHH
Confidence 0112233333 58899999999999998888653 46777777777653
No 156
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=6e-09 Score=104.90 Aligned_cols=198 Identities=16% Similarity=0.317 Sum_probs=101.6
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC---cEEEEcCCCchhh---hhh----
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA---RLYEWDTPTPTIW---QEY---- 220 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~---~viE~nasd~~~~---~e~---- 220 (666)
++|+++.++.|.+++.. +. .+.++|+||.|+|||++++.+.+.+.- .++.+........ ...
T Consensus 1 F~gR~~el~~l~~~l~~------~~--~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GP--SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hc--CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 36899999999999886 22 258999999999999999999998822 2222222221110 000
Q ss_pred ---------hhcccCCcc--------ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc-chhHHHHHH
Q 005987 221 ---------MHNCKTGLE--------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN-GRTAFERLR 282 (666)
Q Consensus 221 ---------l~~~~~g~~--------~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~-~~~~~~~l~ 282 (666)
+.....+.. .......+..+++.+.+.+ .+.||+|||++.+. .......+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----------~~~iiviDe~~~~~~~~~~~~~~~ 141 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKG-----------KKVIIVIDEFQYLAIASEEDKDFL 141 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCH-----------CCEEEEEETGGGGGBCTTTTHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcC-----------CcEEEEEecHHHHhhcccchHHHH
Confidence 111111100 0122344556666665432 23799999999876 211112233
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCC--CH
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL--ST 358 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v--~~ 358 (666)
..|..++.. ...++.+|++.+... ........-..... ++..+.+.|++.++..+.+....... ..+ ++
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~----~~~~~~~~~~~~~~--~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~ 214 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDS----LMEEFLDDKSPLFG--RFSHIELKPLSKEEAREFLKELFKEL-IKLPFSD 214 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHH----HHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC-------H
T ss_pred HHHHHHHhhccccCCceEEEECCchH----HHHHhhcccCcccc--ccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCH
Confidence 334444443 122233333322100 00000000011122 35669999999999999999987665 555 99
Q ss_pred HHHHHHHHHcCCcHHH
Q 005987 359 EQIDLVAQASGGDIRQ 374 (666)
Q Consensus 359 ~~l~~Ia~~s~GDIR~ 374 (666)
+.++.|...++|-.+.
T Consensus 215 ~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 215 EDIEEIYSLTGGNPRY 230 (234)
T ss_dssp HHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 9999999999998874
No 157
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.4e-09 Score=109.88 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=102.7
Q ss_pred CCC-ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhc
Q 005987 145 PRS-LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 145 P~s-l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~ 223 (666)
++. +++++.|+..-..|......-......+.+.+.+|||||||+|||..|+-||+.-|.++--+...|..
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-------- 421 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-------- 421 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc--------
Confidence 444 88899999888888877654333223455668999999999999999999999999887766654411
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc-ch---hHHHHHHHHHHHHH----hcCCCc
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN-GR---TAFERLRQCLLLLV----RSTHIP 295 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~-~~---~~~~~l~~~L~~l~----~~~~~P 295 (666)
..| ...+..+.++++=+++ +++..+|||||+|-.- .+ --.+..+.+|..++ +.++-
T Consensus 422 -PlG---~qaVTkiH~lFDWakk-----------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrd- 485 (630)
T KOG0742|consen 422 -PLG---AQAVTKIHKLFDWAKK-----------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRD- 485 (630)
T ss_pred -ccc---hHHHHHHHHHHHHHhh-----------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccc-
Confidence 011 1122344444444432 2456799999999421 00 00011122233222 22232
Q ss_pred eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 296 TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 296 iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
+|+++ .++.+. .+.+.+..+--.+|.|+-|..++..++|...+.+
T Consensus 486 ivLvl-AtNrpg----------dlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 486 IVLVL-ATNRPG----------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred eEEEe-ccCCcc----------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 33332 223222 2333333323568999999999999998877654
No 158
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-08 Score=110.44 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=145.9
Q ss_pred cccCCCCccccccCHHHHHHHHHHHH------HhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFE------ERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~------~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+.-++-.++|++|-+...+.+...+. ..+. .-+.+.+.+||.||||+|||.+++++|-|.+..+..+.++.-
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 55566778888886555555544432 1111 123345789999999999999999999999999998887651
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHH-HHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLR-QCLLL 287 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~-~~L~~ 287 (666)
..++ .| .....++.++.-++. ..|.||+|||+|.+... ..-.+++ +.|..
T Consensus 223 --tsK~-----~G----e~eK~vralf~vAr~------------~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq 279 (428)
T KOG0740|consen 223 --TSKY-----VG----ESEKLVRALFKVARS------------LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ 279 (428)
T ss_pred --hhhc-----cC----hHHHHHHHHHHHHHh------------cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh
Confidence 1111 11 112233333333332 24679999999975321 1112232 22332
Q ss_pred HHh--cCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 288 LVR--STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 288 l~~--~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
..- ....+.|+++++++.+... ...+.|+....+.++.|+.+....++...+...+..+.+..+..|+
T Consensus 280 ~~~~~s~~~drvlvigaTN~P~e~----------Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~ 349 (428)
T KOG0740|consen 280 FDGKNSAPDDRVLVIGATNRPWEL----------DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLA 349 (428)
T ss_pred hccccCCCCCeEEEEecCCCchHH----------HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 221 1223577888887755432 2223232355678999999999999999998887788889999999
Q ss_pred HH----cCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCC
Q 005987 366 QA----SGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435 (666)
Q Consensus 366 ~~----s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~K 435 (666)
+. ++|||.+...-. ++++...... . .....+....-|..++.-|....+.++++
T Consensus 350 ~~Tegysgsdi~~l~kea---~~~p~r~~~~--------~-----~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 350 KVTEGYSGSDITALCKEA---AMGPLRELGG--------T-----TDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred HHhcCcccccHHHHHHHh---hcCchhhccc--------c-----hhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 87 556777655443 2222111110 0 00011122345777777888888777765
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.97 E-value=2.6e-08 Score=118.99 Aligned_cols=205 Identities=15% Similarity=0.230 Sum_probs=119.7
Q ss_pred cccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh---hhhh
Q 005987 149 EELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI---WQEY 220 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~---~~e~ 220 (666)
+.|+||+..++.|...+...... .++++ ...+||+||+|||||++|++||+.+ +..++.++.+.... ....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 45789999999999998754331 11222 2468999999999999999999998 34567776654211 0111
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC--------
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-------- 292 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~-------- 292 (666)
+......+.|. ....+. +.++. ++..||||||++.++. .+++.|+.+++.+
T Consensus 588 ~g~~~gyvg~~-~~~~l~---~~~~~------------~p~~VvllDeieka~~-----~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 588 IGSPPGYVGYN-EGGQLT---EAVRK------------KPYTVVLFDEIEKAHP-----DIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred cCCCCcccCcC-ccchHH---HHHHh------------CCCeEEEECChhhCCH-----HHHHHHHHHhccCceecCCCc
Confidence 11110011111 111222 22221 1346999999997753 2445566666653
Q ss_pred ----CCceEEEEecCCCC------CCc----------c-chhh---h-hhHH-----HHHHhhcCe-eEEEeCCCCHHHH
Q 005987 293 ----HIPTAVVLTECGKA------DSV----------D-STAQ---S-FEEL-----QSILVDAGA-RKVALNPITNGSI 341 (666)
Q Consensus 293 ----~~PiViIit~~~~~------~s~----------d-~~~r---~-l~~L-----~s~L~r~r~-~~I~F~p~s~~~i 341 (666)
+..+||++++.+.. ... + .+.. . ...+ +++++| + .+|.|+|++.+++
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnR--id~ii~F~pL~~~~l 724 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNR--LDEIIVFRQLTKNDV 724 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhcc--CCeEEEeCCCCHHHH
Confidence 22355555554321 000 0 0000 0 0011 244544 5 7899999999999
Q ss_pred HHHHHHHHHH-------h--CCCCCHHHHHHHHHHc------CCcHHHHHH
Q 005987 342 KRTLSKICRQ-------E--QYSLSTEQIDLVAQAS------GGDIRQAIT 377 (666)
Q Consensus 342 ~kiL~~I~~~-------e--~i~v~~~~l~~Ia~~s------~GDIR~AIn 377 (666)
.+++.+.+.. . .+.+++++++.|++.+ ...+|++|.
T Consensus 725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 9998887764 1 2568999999999873 235666664
No 160
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.5e-09 Score=105.80 Aligned_cols=172 Identities=19% Similarity=0.307 Sum_probs=95.3
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCC------CCccEEEEECCCCchHHHHHHHHHHHcC---------CcEEEEcCCC
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDK------FSTNVLVITGQAGVGKTATVRQIASHLG---------ARLYEWDTPT 213 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~------~~~k~LLL~GPpG~GKTtla~~LAkelg---------~~viE~nasd 213 (666)
+.|+......++|..+....+.-...+ .-.+.+||+||||+|||++.++||+.+. ..++|+|+-.
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs 221 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS 221 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH
Confidence 345555556666666655433211000 1137899999999999999999999983 3567887643
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc-----------hhHHHHHH
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-----------RTAFERLR 282 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~-----------~~~~~~l~ 282 (666)
.+.+.+... |.-+. ..|+++-+-+.. .+.-++++|||+..+.. .++.+ +.
T Consensus 222 --LFSKWFsES--gKlV~---kmF~kI~ELv~d-----------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIR-vV 282 (423)
T KOG0744|consen 222 --LFSKWFSES--GKLVA---KMFQKIQELVED-----------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIR-VV 282 (423)
T ss_pred --HHHHHHhhh--hhHHH---HHHHHHHHHHhC-----------CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHH-HH
Confidence 444444321 22111 123332222221 12347899999986421 22333 33
Q ss_pred HHHHHHHh-cCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHH
Q 005987 283 QCLLLLVR-STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC 349 (666)
Q Consensus 283 ~~L~~l~~-~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~ 349 (666)
++++.-++ -.++|-|+|.++.+..+ .|.-.+..+---+....||+...+.++|+.-.
T Consensus 283 NalLTQlDrlK~~~NvliL~TSNl~~----------siD~AfVDRADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 283 NALLTQLDRLKRYPNVLILATSNLTD----------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHhccCCCEEEEeccchHH----------HHHHHhhhHhhheeecCCccHHHHHHHHHHHH
Confidence 44444333 34568777777655332 22222222112345678999998888887544
No 161
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.3e-09 Score=115.85 Aligned_cols=203 Identities=14% Similarity=0.151 Sum_probs=115.8
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccc
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTS 232 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s 232 (666)
|-++..++|.++|.-.... ++..+.+|+|.||||+|||++++.+|+.+|-+++.+.-...+.-.|.-+.-. ....+
T Consensus 327 GLekVKeRIlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR--TYIGa 402 (782)
T COG0466 327 GLEKVKERILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR--TYIGA 402 (782)
T ss_pred CchhHHHHHHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc--ccccc
Confidence 5577788888887632211 3333469999999999999999999999999999887543332222211100 11122
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---hHHHHHHHHHHHHHhcC------C-----CceEE
Q 005987 233 KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---TAFERLRQCLLLLVRST------H-----IPTAV 298 (666)
Q Consensus 233 ~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---~~~~~l~~~L~~l~~~~------~-----~PiVi 298 (666)
....+ ++.+++.+. ...+++|||+|.+... +....+.++|..--... . .-++|
T Consensus 403 mPGrI---iQ~mkka~~----------~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 403 MPGKI---IQGMKKAGV----------KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred CChHH---HHHHHHhCC----------cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 22233 333333321 2239999999987432 11122333332110000 0 12566
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHH-----HHhC-----CCCCHHHHHHHHHHc
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC-----RQEQ-----YSLSTEQIDLVAQAS 368 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~-----~~e~-----i~v~~~~l~~Ia~~s 368 (666)
|+|+-+. ..+ ..++|. |..+|++..++..+-..+.++.+ ...| +.+++++|..|++.-
T Consensus 470 iaTANsl--------~tI--P~PLlD--RMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 470 IATANSL--------DTI--PAPLLD--RMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred EeecCcc--------ccC--ChHHhc--ceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 6665211 111 123333 59999999999998777766543 2333 568899999998762
Q ss_pred C--CcHHHHHHHHHHHhc
Q 005987 369 G--GDIRQAITSLQFSSL 384 (666)
Q Consensus 369 ~--GDIR~AIn~LQf~~~ 384 (666)
- --+|..=..|.-+|.
T Consensus 538 TREAGVR~LeR~i~ki~R 555 (782)
T COG0466 538 TREAGVRNLEREIAKICR 555 (782)
T ss_pred hHhhhhhHHHHHHHHHHH
Confidence 2 235665555655554
No 162
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.95 E-value=9.9e-08 Score=94.61 Aligned_cols=208 Identities=20% Similarity=0.248 Sum_probs=135.3
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI 216 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~ 216 (666)
+..|-|-.+.+|+|-+...+.+.+--+.... |.+. +++||+|..|+|||++++++-.++ |..++|++..+
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~---G~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d--- 123 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE---GLPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED--- 123 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc---CCcc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH---
Confidence 4456678899999988877777665554443 4444 899999999999999999999988 78899988544
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi 296 (666)
+..+-.+++.++..+ .+.||+.||+---.+..++..+..+|..-++.... -
T Consensus 124 -----------------l~~Lp~l~~~Lr~~~-----------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~-N 174 (287)
T COG2607 124 -----------------LATLPDLVELLRARP-----------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPA-N 174 (287)
T ss_pred -----------------HhhHHHHHHHHhcCC-----------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCC-e
Confidence 234555666665433 46899999987555555555554444433322221 3
Q ss_pred EEEEecCCCCCCc-----cc--------hhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 297 AVVLTECGKADSV-----DS--------TAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 297 ViIit~~~~~~s~-----d~--------~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
|++..+++..... |. .....+. +-.|+.+....+.|.|.+.++..+++...++..++.++++.++.
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveE-KlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~ 253 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEE-KLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHA 253 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHH-hhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3343333322111 10 0111111 11233335678999999999999999999999999998766655
Q ss_pred HH-----HHcCCcHHHHHHHHHHHhc
Q 005987 364 VA-----QASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 364 Ia-----~~s~GDIR~AIn~LQf~~~ 384 (666)
=| ...+..=|.|-.-.+.++.
T Consensus 254 eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 254 EALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred HHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 44 2344566777766666664
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-08 Score=116.25 Aligned_cols=196 Identities=18% Similarity=0.265 Sum_probs=120.8
Q ss_pred ccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCCchh---hhhhh
Q 005987 150 ELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTI---WQEYM 221 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd~~~---~~e~l 221 (666)
.++||+.++..|.+.++....+ .+.++ ...+||.||+|||||.+|++||..|. -.++.++.|.... ....+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rP-igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRP-IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCC-ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 4789999999999999876543 22333 35899999999999999999999996 5677777665221 11122
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC---------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--------- 292 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~--------- 292 (666)
..+...+.|.. ...+. +.++ .++..|||+||+...+ ..+.+.|++.++.+
T Consensus 571 GaPPGYVGyee-GG~LT---EaVR------------r~PySViLlDEIEKAH-----pdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 571 GAPPGYVGYEE-GGQLT---EAVR------------RKPYSVILLDEIEKAH-----PDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred CCCCCCceecc-ccchh---Hhhh------------cCCCeEEEechhhhcC-----HHHHHHHHHHhcCCeeecCCCCE
Confidence 22222222321 11111 1111 1345799999998654 34556677777654
Q ss_pred ---CCceEEEEecCCCCCCc-----c----c---hhhhhhHH-----HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH-
Q 005987 293 ---HIPTAVVLTECGKADSV-----D----S---TAQSFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ- 351 (666)
Q Consensus 293 ---~~PiViIit~~~~~~s~-----d----~---~~r~l~~L-----~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~- 351 (666)
+.-+||+++|.+..... + . ....+..+ +++|+| --.+|.|++++.+.+.+++...+..
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR-id~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR-IDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh-cccEEeccCCCHHHHHHHHHHHHHHH
Confidence 22466666665432100 0 0 00111112 244544 2348999999999999887766543
Q ss_pred ------hC--CCCCHHHHHHHHHHc
Q 005987 352 ------EQ--YSLSTEQIDLVAQAS 368 (666)
Q Consensus 352 ------e~--i~v~~~~l~~Ia~~s 368 (666)
.+ +.+++++.+.|++.+
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhc
Confidence 23 457899999999884
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=3.4e-08 Score=105.59 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE--EcCCCchhhhhhhhc--------c--c----------------
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE--WDTPTPTIWQEYMHN--------C--K---------------- 225 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE--~nasd~~~~~e~l~~--------~--~---------------- 225 (666)
++.+ +.+||+||+|+||+++|+.+|+.+.+.--. -.+...+.....+.. . .
T Consensus 18 ~rl~-ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 18 ARLP-HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred CCcc-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 5666 789999999999999999999999664210 001011100000000 0 0
Q ss_pred ----CCcc-----ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce
Q 005987 226 ----TGLE-----YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 226 ----~g~~-----~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi 296 (666)
.|.. -.-.+++++++.+.+...+ .....+|+|||+++.++.. ..++|++.++.....+
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~--------~~~~~kV~iI~~ae~m~~~-----AaNaLLKtLEEPp~~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGT--------HRGGARVVVLYPAEALNVA-----AANALLKTLEEPPPGT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCC--------ccCCceEEEEechhhcCHH-----HHHHHHHHhcCCCcCc
Confidence 0100 0123456666665443111 1123579999999998654 2345666667665444
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
+||..... ..+.++.|++ ||+.|.|.+++.+++...|... + +++ .+.++..++|.+..|+
T Consensus 164 ~fiL~t~~-------~~~LLpTI~S-----Rcq~i~~~~~~~~~~~~~L~~~----~--~~~--~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 164 VFLLVSAR-------IDRLLPTILS-----RCRQFPMTVPAPEAAAAWLAAQ----G--VAD--ADALLAEAGGAPLAAL 223 (342)
T ss_pred EEEEEECC-------hhhCcHHHHh-----cCEEEEecCCCHHHHHHHHHHc----C--CCh--HHHHHHHcCCCHHHHH
Confidence 44443322 2334444444 6999999999999999998753 3 333 2345677899999887
Q ss_pred HHH
Q 005987 377 TSL 379 (666)
Q Consensus 377 n~L 379 (666)
..+
T Consensus 224 ~~~ 226 (342)
T PRK06964 224 ALA 226 (342)
T ss_pred HHH
Confidence 654
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.91 E-value=4.1e-08 Score=117.44 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=117.2
Q ss_pred ccccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhh---hh
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW---QE 219 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~---~e 219 (666)
...|+||+..++.|...+...... .++++. ..+||+||+|||||++|++||+.+ +..++.++.+..... ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~-~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~ 645 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPI-GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSR 645 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCC-ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHH
Confidence 346889999999999999865421 112221 479999999999999999999987 345677766542110 01
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC-------
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST------- 292 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~------- 292 (666)
.+.. ..| |.... . ..++..+.+. ++..||+|||++.++.. .++.|..+++.+
T Consensus 646 LiG~-~pg--y~g~~-~-~g~l~~~v~~-----------~p~~vLllDEieka~~~-----v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 646 LVGA-PPG--YVGYE-E-GGYLTEAVRR-----------RPYSVILLDEVEKAHPD-----VFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred HhCC-CCc--ccccc-h-hHHHHHHHHh-----------CCCCeEEEeehhhCCHH-----HHHHHHHHHhhCceecCCc
Confidence 1111 111 11000 0 0112221111 12359999999977532 334455555443
Q ss_pred -----CCceEEEEecCCCCCCc-----cchhhhhh--------HH-HHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHh
Q 005987 293 -----HIPTAVVLTECGKADSV-----DSTAQSFE--------EL-QSILVDAGA-RKVALNPITNGSIKRTLSKICRQE 352 (666)
Q Consensus 293 -----~~PiViIit~~~~~~s~-----d~~~r~l~--------~L-~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e 352 (666)
+..+||++++.+..... ....+.-. .+ ++++.| + .+|.|+|++.+.+.+++...+...
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnR--ld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINR--IDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHh--CCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 22345555554321100 00000000 01 234443 5 789999999999999888776541
Q ss_pred -------C--CCCCHHHHHHHHHHcC----C--cHHHHHHH
Q 005987 353 -------Q--YSLSTEQIDLVAQASG----G--DIRQAITS 378 (666)
Q Consensus 353 -------~--i~v~~~~l~~Ia~~s~----G--DIR~AIn~ 378 (666)
+ +.+++++++.|+...- | .+|++|..
T Consensus 783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 3 4579999999998632 3 55665543
No 166
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.8e-09 Score=105.60 Aligned_cols=105 Identities=20% Similarity=0.339 Sum_probs=72.3
Q ss_pred CccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYM 221 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l 221 (666)
+++.+-|-...++++++-++-.+.+ .-|-.++++++||||||+|||.+++++|..+|++.+-+.++. ...++
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~--lv~ky- 206 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA--LVDKY- 206 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh--hhhhh-
Confidence 7888888888999988887643332 113334589999999999999999999999999999887764 11111
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG 274 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~ 274 (666)
.| .....+++....++.. .++||++||+|-..+
T Consensus 207 ----iG----EsaRlIRemf~yA~~~------------~pciifmdeiDAigG 239 (388)
T KOG0651|consen 207 ----IG----ESARLIRDMFRYAREV------------IPCIIFMDEIDAIGG 239 (388)
T ss_pred ----cc----cHHHHHHHHHHHHhhh------------CceEEeehhhhhhcc
Confidence 11 1222334433333322 368999999996543
No 167
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.90 E-value=5.6e-08 Score=98.45 Aligned_cols=111 Identities=18% Similarity=0.287 Sum_probs=81.7
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCC---CCccch-hhhhhHHHHHHhhcCeeEEEeCCC
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKA---DSVDST-AQSFEELQSILVDAGARKVALNPI 336 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~---~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~ 336 (666)
|-++||||+++++-. .|. .|...+++.-.|+|+++++.+.- ...|.. .+-++ ..+|. |..+|+-.++
T Consensus 297 PGVLFIDEVhMLDiE-cFT----yL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip--~dllD--Rl~Iirt~~y 367 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIE-CFT----YLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIP--PDLLD--RLLIIRTLPY 367 (456)
T ss_pred CcceEeeehhhhhhH-HHH----HHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCC--HHHhh--heeEEeeccC
Confidence 669999999987532 233 35566677778999999886532 111211 11121 34444 4789999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 005987 337 TNGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQ 380 (666)
Q Consensus 337 s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-s~GDIR~AIn~LQ 380 (666)
+++++++++++.++.|++.+++++++.++.. +.-.+|.|+..|-
T Consensus 368 ~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 368 DEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred CHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 9999999999999999999999999999986 4577999988775
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.89 E-value=7.3e-08 Score=115.60 Aligned_cols=212 Identities=17% Similarity=0.206 Sum_probs=124.5
Q ss_pred cccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh---hhhh
Q 005987 149 EELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI---WQEY 220 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~---~~e~ 220 (666)
..|+||+..++.|...+...... .+.++ ...+||+||+|||||++|++||+.+ +..++.++.+.... ....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p-~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRP-IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCC-CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence 45899999999999999865431 11222 2579999999999999999999988 45677777664211 1111
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC--------
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-------- 292 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~-------- 292 (666)
++.......|.. ...+ .+.++.. +..|||+||++.++.. +++.|+.+++.+
T Consensus 644 ~g~~~g~~g~~~-~g~l---~~~v~~~------------p~~vlllDeieka~~~-----v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 644 IGAPPGYVGYEE-GGQL---TEAVRRK------------PYSVVLFDEVEKAHPD-----VFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred cCCCCCccCccc-ccHH---HHHHHcC------------CCcEEEEeccccCCHH-----HHHHHHHHHhcCceecCCCe
Confidence 111110011111 1112 1222211 2359999999977532 344455555543
Q ss_pred ----CCceEEEEecCCCCCCcc------c--hh-hhhhHH-----HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH---
Q 005987 293 ----HIPTAVVLTECGKADSVD------S--TA-QSFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ--- 351 (666)
Q Consensus 293 ----~~PiViIit~~~~~~s~d------~--~~-r~l~~L-----~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~--- 351 (666)
+..+||++++.+.....+ + .. ..+..+ .+++.| --.+|.|+|++.+.+.+++...+..
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~R-id~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNR-IDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcC-cCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 234566666653321000 0 00 000111 233333 2368999999999999998877652
Q ss_pred ----h--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHh
Q 005987 352 ----E--QYSLSTEQIDLVAQAS---GGDIRQAITSLQFSS 383 (666)
Q Consensus 352 ----e--~i~v~~~~l~~Ia~~s---~GDIR~AIn~LQf~~ 383 (666)
. .+.+++++++.|++.. .+.+|..-+.++-..
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1 2568999999999873 366776666665543
No 169
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.83 E-value=4e-08 Score=107.38 Aligned_cols=114 Identities=18% Similarity=0.390 Sum_probs=73.2
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc-------EEEEcCCCchhhhhh
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR-------LYEWDTPTPTIWQEY 220 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~-------viE~nasd~~~~~e~ 220 (666)
++++++.+..++.+...|.. .+.++|+||||||||++|+.+|+.+... .+++.. ...+.+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHp--sySYeDF 241 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQ--SYSYEDF 241 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecc--cccHHHH
Confidence 67788888898888887764 1579999999999999999999998532 222221 1222333
Q ss_pred hhc-ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 221 MHN-CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 221 l~~-~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
+.. ...+..|.....-|.+++.++.... ..+.+|||||+++.+....|+.+..
T Consensus 242 I~G~rP~~vgy~~~~G~f~~~~~~A~~~p----------~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 242 IQGYRPNGVGFRRKDGIFYNFCQQAKEQP----------EKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred hcccCCCCCCeEecCchHHHHHHHHHhcc----------cCCcEEEEehhhccCHHHhhhhhhh
Confidence 211 1122333333345777777775432 2467999999998765555555543
No 170
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.83 E-value=1.5e-07 Score=102.87 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=47.1
Q ss_pred cccCHHHHHHHHHHHHHhhcCC-----CCC-----CCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDS-----KDK-----FSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~-----~g~-----~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
++||+++++.+...+.++.... ... .....+||+||||||||++|++||+.++..+..++++.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 5899999999987775333211 000 12357999999999999999999999998888777653
No 171
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.82 E-value=5.6e-08 Score=105.11 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=48.9
Q ss_pred cccCHHHHHHHHHHHHHh-hcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEER-LGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~-~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
++||++.++.+...+... .... ....+++.+||+||||||||+++++||+.++..++.++++.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~ 82 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 82 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence 689999999998777642 2110 11223478999999999999999999999999998888653
No 172
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.81 E-value=5.3e-08 Score=105.35 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=49.6
Q ss_pred cccCHHHHHHHHHHHHHhh-cC----C-CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERL-GD----S-KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~-~~----~-~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
++||++.++.|..++.... .. . .....++.+||+||||||||++|+.||+.++..++.++++.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 7899999999999996532 11 0 01112368999999999999999999999999999888753
No 173
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.7e-07 Score=96.12 Aligned_cols=164 Identities=13% Similarity=0.133 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch-hhhhhhhcc-----cCCccccc
Q 005987 159 EEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT-IWQEYMHNC-----KTGLEYTS 232 (666)
Q Consensus 159 ~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~-~~~e~l~~~-----~~g~~~~s 232 (666)
+.+...++. ++.+ +.+||+||+|+||+++|..+|+.+-+.- .+..+ .+....|.. ..|..-.-
T Consensus 7 ~~L~~~i~~------~rl~-HAyLf~G~~G~Gk~~lA~~~A~~llC~~----~~~~c~~~~~~~HPD~~~i~p~~~~~~I 75 (290)
T PRK05917 7 EALIQRVRD------QKVP-SAIILHGQDLSNLSARAYELASLILKET----SPEAAYKISQKIHPDIHEFSPQGKGRLH 75 (290)
T ss_pred HHHHHHHHc------CCcC-eeEeeECCCCCcHHHHHHHHHHHHhCCC----CccHHHHHhcCCCCCEEEEecCCCCCcC
Confidence 455555554 6777 7999999999999999999999985531 11111 000000000 01110012
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccch
Q 005987 233 KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312 (666)
Q Consensus 233 ~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~ 312 (666)
.+++++++.+.+...+ .....+|++||+++.+... ..++|++.++.....+++|....+ .
T Consensus 76 ~idqiR~l~~~~~~~p--------~e~~~kv~ii~~ad~mt~~-----AaNaLLK~LEEPp~~~~fiL~~~~-------~ 135 (290)
T PRK05917 76 SIETPRAIKKQIWIHP--------YESPYKIYIIHEADRMTLD-----AISAFLKVLEDPPQHGVIILTSAK-------P 135 (290)
T ss_pred cHHHHHHHHHHHhhCc--------cCCCceEEEEechhhcCHH-----HHHHHHHHhhcCCCCeEEEEEeCC-------h
Confidence 4667777666654322 1124579999999988643 334567777776544444443322 2
Q ss_pred hhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q 005987 313 AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIR 373 (666)
Q Consensus 313 ~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR 373 (666)
.+.++.+++ ||+.+.|+++ +...++++.+..++..++|+++
T Consensus 136 ~~ll~TI~S-----Rcq~~~~~~~---------------~~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 136 QRLPPTIRS-----RSLSIHIPME---------------EKTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred hhCcHHHHh-----cceEEEccch---------------hccCCCHHHHHHHHHHhCCChh
Confidence 334445554 6999999986 2224788889999999999986
No 174
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=7.5e-08 Score=102.74 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=83.5
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEE--cCCCchhhhhhh----hc------c-----cCCcc-ccchhH
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW--DTPTPTIWQEYM----HN------C-----KTGLE-YTSKLD 235 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~--nasd~~~~~e~l----~~------~-----~~g~~-~~s~~~ 235 (666)
++.+ +.+||+||+|+|||++|+.+|+.+.+.--.- .+...+.....+ +. . ..|.. -.-.++
T Consensus 18 ~r~~-hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRP-NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID 96 (325)
T ss_pred CCcc-eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH
Confidence 5666 7899999999999999999999986531000 000101000000 00 0 00100 012467
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhh
Q 005987 236 EFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQ 314 (666)
Q Consensus 236 ~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r 314 (666)
+++++++.+...+. ....+|+|||+++.++... .+. |+..++... .-++|+++.. ...
T Consensus 97 ~iR~l~~~~~~~p~--------~~~~kV~iiEp~~~Ld~~a-~na----LLk~LEep~~~~~~Ilvth~--------~~~ 155 (325)
T PRK08699 97 AVREIIDNVYLTSV--------RGGLRVILIHPAESMNLQA-ANS----LLKVLEEPPPQVVFLLVSHA--------ADK 155 (325)
T ss_pred HHHHHHHHHhhCcc--------cCCceEEEEechhhCCHHH-HHH----HHHHHHhCcCCCEEEEEeCC--------hHh
Confidence 77877776643221 1235799999999987542 233 444444432 2234444431 122
Q ss_pred hhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHH
Q 005987 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSK 347 (666)
Q Consensus 315 ~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~ 347 (666)
.++.+++ ||..+.|.+++.+++...|..
T Consensus 156 ll~ti~S-----Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 156 VLPTIKS-----RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHHHHH-----HhhhhcCCCCCHHHHHHHHHh
Confidence 3333333 699999999999999988864
No 175
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-07 Score=111.48 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=126.4
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCC-----CCCCccEEEEECCCCchHHHHHHHHHHHcC--CcEEEEcCCCchhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPTPTIWQ 218 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~-----g~~~~k~LLL~GPpG~GKTtla~~LAkelg--~~viE~nasd~~~~~ 218 (666)
..|+++.|-+..+.++++.+..-+.+.. +-.|++.+|++||||+|||..|+++|..+. .+-+-.-.-.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk----- 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK----- 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc-----
Confidence 4678899999999998887654433221 233458899999999999999999999982 2111110000
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHHHHHhcC
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRST 292 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~~l~~~~ 292 (666)
++.-.+..+.....+++-..+.+++. .|.||++||||++..-. ....+...|+.++..-
T Consensus 337 ---gaD~lskwvgEaERqlrllFeeA~k~------------qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl 401 (1080)
T KOG0732|consen 337 ---GADCLSKWVGEAERQLRLLFEEAQKT------------QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL 401 (1080)
T ss_pred ---CchhhccccCcHHHHHHHHHHHHhcc------------CceEEeccccccccccccchHHHhhhhHHHHHHHhccCC
Confidence 00011222333445666666777543 36799999999874311 1112334455555432
Q ss_pred -CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 293 -HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 293 -~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
.++-|++|++++..+. +...|+|++ -..+.|.-++.+...++|...-.+..-.++...+..||+.+.
T Consensus 402 dsRgqVvvigATnRpda----------~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 402 DSRGQVVVIGATNRPDA----------IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETS 471 (1080)
T ss_pred CCCCceEEEcccCCccc----------cchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcc
Confidence 2344566677665443 333444432 346899999999999998877666667788999999999987
Q ss_pred CcHHHH
Q 005987 370 GDIRQA 375 (666)
Q Consensus 370 GDIR~A 375 (666)
|-...-
T Consensus 472 gy~gaD 477 (1080)
T KOG0732|consen 472 GYGGAD 477 (1080)
T ss_pred ccchHH
Confidence 766654
No 176
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=1.7e-06 Score=91.17 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcE----EEEcCCCchhhhhhhhcccCCccccch
Q 005987 158 VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL----YEWDTPTPTIWQEYMHNCKTGLEYTSK 233 (666)
Q Consensus 158 i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~v----iE~nasd~~~~~e~l~~~~~g~~~~s~ 233 (666)
++.+++-++. ++.+ +.+||+|+.|.||+++++.+|+.+.+.- -.-+.++...+ + + ..|. .-.
T Consensus 5 ~~~l~~~i~~------~~l~-haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~---~-d-~~g~--~i~ 70 (299)
T PRK07132 5 IKFLDNSATQ------NKIS-HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL---F-D-IFDK--DLS 70 (299)
T ss_pred HHHHHHHHHh------CCCC-eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE---e-c-cCCC--cCC
Confidence 4445555543 5666 7899999999999999999999984421 00011110000 0 0 0011 123
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchh
Q 005987 234 LDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTA 313 (666)
Q Consensus 234 ~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~ 313 (666)
.+++++.++.+...+ . ..+.++|+|||+++.+... ..++|+.+++....-+++|....+ ..
T Consensus 71 vd~Ir~l~~~~~~~~------~-~~~~~KvvII~~~e~m~~~-----a~NaLLK~LEEPp~~t~~il~~~~-------~~ 131 (299)
T PRK07132 71 KSEFLSAINKLYFSS------F-VQSQKKILIIKNIEKTSNS-----LLNALLKTIEEPPKDTYFLLTTKN-------IN 131 (299)
T ss_pred HHHHHHHHHHhccCC------c-ccCCceEEEEecccccCHH-----HHHHHHHHhhCCCCCeEEEEEeCC-------hH
Confidence 456666665543211 0 1124679999999987532 334567777776544444443321 12
Q ss_pred hhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 314 QSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 314 r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
+.++.+++ ||+.+.|.|++..++.+.|... + ++++....++..++| +..|+..+
T Consensus 132 kll~TI~S-----Rc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~ 185 (299)
T PRK07132 132 KVLPTIVS-----RCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYI 185 (299)
T ss_pred hChHHHHh-----CeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHH
Confidence 34444443 6999999999999999888742 2 677777777777764 88887763
No 177
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.8e-07 Score=102.04 Aligned_cols=160 Identities=20% Similarity=0.281 Sum_probs=99.4
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcC----CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg----~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
.+..+||+||+|||||.+++++++++. +.+..+.++. .. .+..+.++.++..+-..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~-----------l~----~~~~e~iQk~l~~vfse~~--- 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST-----------LD----GSSLEKIQKFLNNVFSEAL--- 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh-----------cc----chhHHHHHHHHHHHHHHHH---
Confidence 346899999999999999999999984 2333344443 11 2235566666655422210
Q ss_pred CCCCCCCCceEEEEeCCCCCcc-------hh--HHHHHHHHHHH----HHhcCCCceEEEEecCCCCCCccchhhhhhHH
Q 005987 253 SIPGESKSSAILLIDDLPVTNG-------RT--AFERLRQCLLL----LVRSTHIPTAVVLTECGKADSVDSTAQSFEEL 319 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~-------~~--~~~~l~~~L~~----l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L 319 (666)
...|.||++|++|.+.+ +. ..+++...|.. +.+..+ -+.+|.+.. .+..|
T Consensus 492 -----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~-~ia~Iat~q-----------e~qtl 554 (952)
T KOG0735|consen 492 -----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNR-KIAVIATGQ-----------ELQTL 554 (952)
T ss_pred -----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCc-EEEEEEech-----------hhhhc
Confidence 11367999999997643 11 12233333333 223332 244554431 12223
Q ss_pred HHHHhhcC--eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 005987 320 QSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (666)
Q Consensus 320 ~s~L~r~r--~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GD 371 (666)
...|..++ -.++++.+|+.++..++|..++.+....+..+.|+.++..+.|-
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 33333322 34679999999999999999999887777788888899888883
No 178
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.69 E-value=3.3e-07 Score=93.79 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=48.6
Q ss_pred ccccCCCCccccccC----HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 140 AEKYKPRSLEELAVQ----RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~----~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
.+.|++.+|+.+... ...+..+..+++... .. ...++|+||||||||+++.++|+++ |..++.+..+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~----~~--~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFD----GN--IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhc----cC--CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 467788889888643 335566666665432 11 1479999999999999999999998 6777766543
No 179
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.69 E-value=6.4e-07 Score=102.47 Aligned_cols=215 Identities=13% Similarity=0.180 Sum_probs=123.6
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhh
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW 217 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~ 217 (666)
.+++..+++.|+|+...++++.+-++.... .. ..+||+|++||||+++|+++.... +..++.+|+.....
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~---~~---~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~- 260 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVAR---SN---STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE- 260 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhC---cC---CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-
Confidence 345567889999999999999998886542 11 469999999999999999999875 46788898864210
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHH-hhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC--
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIR-RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-- 294 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~-~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~-- 294 (666)
+.+.....|..-. .| ..... +.+.+ ....+.+|+|||++.+... ++..|..+++.+..
T Consensus 261 -~~~~~~lfg~~~~----~~---~~~~~~~~g~~------~~a~~GtL~ldei~~L~~~-----~Q~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 261 -TLLESELFGHEKG----AF---TGAIAQRKGRF------ELADGGTLFLDEIGEISPA-----FQAKLLRVLQEGEFER 321 (534)
T ss_pred -HHHHHHHcCCCCC----cc---CCCCcCCCCcc------cccCCCeEEEechhhCCHH-----HHHHHHHHHhcCcEEE
Confidence 0000000010000 00 00000 00000 0012347999999988643 23334445544321
Q ss_pred ----------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCC--HHHHHHHHHHHHHH----hC--CCC
Q 005987 295 ----------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKICRQ----EQ--YSL 356 (666)
Q Consensus 295 ----------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s--~~~i~kiL~~I~~~----e~--i~v 356 (666)
..+|++++...... .....+ ...++.+.....|.++|+. .++|..++...+.+ .+ +.+
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~--~~~~~f--~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~ 397 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEA--VAKGEF--RADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTI 397 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHH--HHcCCC--CHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCC
Confidence 12333332111000 000011 0223333345678898887 45665555554432 22 568
Q ss_pred CHHHHHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 357 STEQIDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 357 ~~~~l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
++++++.|.... .|++|..-|.++.++..
T Consensus 398 s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 398 TPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 999999999885 79999999999988753
No 180
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.68 E-value=8.2e-08 Score=97.61 Aligned_cols=115 Identities=20% Similarity=0.348 Sum_probs=83.8
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCC--ccc-hhhhhhHHHHHHhhcCeeEEEeCCCC
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADS--VDS-TAQSFEELQSILVDAGARKVALNPIT 337 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s--~d~-~~r~l~~L~s~L~r~r~~~I~F~p~s 337 (666)
|-||||||+++++-. .|. .|...++..-.|++++.++...... .++ ..+-++ ..+|. |..+|.-.|++
T Consensus 289 pGVLFIDEvHMLDIE-cFs----FlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP--~D~lD--R~lII~t~py~ 359 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIE-CFS----FLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIP--IDLLD--RMLIISTQPYT 359 (454)
T ss_pred cceEEEeeehhhhhH-HHH----HHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCc--HHHhh--hhheeecccCc
Confidence 669999999987532 222 3556667777899999988653211 111 112221 23444 37899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHhc
Q 005987 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 338 ~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-s~GDIR~AIn~LQf~~~ 384 (666)
.++++++|+..|..|.+.+++++++.|... ..-.+|.||+.+-.++.
T Consensus 360 ~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 360 EEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASL 407 (454)
T ss_pred HHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999876 44679999998865543
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.67 E-value=3.2e-07 Score=84.55 Aligned_cols=53 Identities=30% Similarity=0.435 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+++..+..+..++... ..+.++|+||||||||++++.+++.+ +..++.++...
T Consensus 2 ~~~~~~~~i~~~~~~~--------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 2 GQEEAIEALREALELP--------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred chHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 4556666666666531 12589999999999999999999998 78888777654
No 182
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.5e-06 Score=90.87 Aligned_cols=185 Identities=13% Similarity=0.136 Sum_probs=106.3
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCchhhhhhhhc-ccCCc--
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTPTIWQEYMHN-CKTGL-- 228 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~~~~~e~l~~-~~~g~-- 228 (666)
.|+..++.++..+.. ++.+ +.+||+|| +||+++|+.+|+.+-+.-.. ..+...+.....+.+ ....+
T Consensus 6 ~q~~~~~~L~~~~~~------~rl~-hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~ 76 (290)
T PRK07276 6 KQPKVFQRFQTILEQ------DRLN-HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTV 76 (290)
T ss_pred HHHHHHHHHHHHHHc------CCcc-eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeee
Confidence 467777888887776 6776 78999996 68999999999998543110 000000111111100 00000
Q ss_pred ----cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCC
Q 005987 229 ----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECG 304 (666)
Q Consensus 229 ----~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~ 304 (666)
.-.-.+++++++...+...+ ..+..+|+|||++|.+... ..++|++.++.....+++|....+
T Consensus 77 i~p~~~~I~idqIR~l~~~~~~~p--------~~~~~kV~II~~ad~m~~~-----AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 77 IEPQGQVIKTDTIRELVKNFSQSG--------YEGKQQVFIIKDADKMHVN-----AANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred ecCCCCcCCHHHHHHHHHHHhhCc--------ccCCcEEEEeehhhhcCHH-----HHHHHHHHhcCCCCCeEEEEEECC
Confidence 00123566666666553221 1124579999999998643 334577777776544444443322
Q ss_pred CCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005987 305 KADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (666)
Q Consensus 305 ~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~L 379 (666)
..+.++.|++ ||+.|+|.+ +.+.+.++|. .+|+ +.+....++..+ |.+..|+..+
T Consensus 144 -------~~~lLpTI~S-----Rcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 144 -------ENKVLPTIKS-----RTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred -------hhhCchHHHH-----cceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHh
Confidence 2345555555 699999976 6666665554 5554 444444455544 6788887665
No 183
>PRK12377 putative replication protein; Provisional
Probab=98.62 E-value=6.1e-07 Score=92.04 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=44.2
Q ss_pred cCCCCccccc----cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 143 YKPRSLEELA----VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 143 Y~P~sl~eLv----g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|.-.+|+.+. ++...+..+..+++.+.. + ...++|+||||||||+++.++|+++ |..++.++.+
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~---~---~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMT---G---CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHh---c---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 3334555554 344456666666666542 1 1479999999999999999999998 6677666654
No 184
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.6e-06 Score=88.63 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=99.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh-cccCCccc------cchhHHHHHHHHHHHhhcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH-NCKTGLEY------TSKLDEFENFVERIRRYGSTS 251 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~-~~~~g~~~------~s~~~~f~~fl~~a~~~~~l~ 251 (666)
+.+||+||.|+||..+|..+|+.+-+.--. .+...+.....+. .......+ .-..++++++.+.+. +.+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~-~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~-~~s-- 83 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKAN-GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLN-RPS-- 83 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCC-CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHc-cCc--
Confidence 789999999999999999999998543111 0011111111110 00011110 123456666655543 110
Q ss_pred CCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEE
Q 005987 252 PSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKV 331 (666)
Q Consensus 252 ~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I 331 (666)
. ..+..+|++|++++.+... ..++|+++++....-+++|....+ ..+.++.+++ ||+.+
T Consensus 84 --~--e~~~~KV~II~~ae~m~~~-----AaNaLLK~LEEPp~~t~fiLit~~-------~~~lLpTI~S-----RCq~~ 142 (261)
T PRK05818 84 --V--ESNGKKIYIIYGIEKLNKQ-----SANSLLKLIEEPPKNTYGIFTTRN-------ENNILNTILS-----RCVQY 142 (261)
T ss_pred --h--hcCCCEEEEeccHhhhCHH-----HHHHHHHhhcCCCCCeEEEEEECC-------hHhCchHhhh-----heeee
Confidence 0 1123579999999988643 334577777776554555544322 2344555554 69999
Q ss_pred EeCCC----------CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005987 332 ALNPI----------TNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 332 ~F~p~----------s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~ 382 (666)
.|.++ .+.++.+.|... ..+++ .++..++|++..|+..++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~L~~~-----~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 143 VVLSKEKKVPFKVESNDRYFQYILLSF-----YSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred ecCChhhhcccccccChHHHHHHHHHc-----cCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 99988 444445444321 22443 67778899999999999965
No 185
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.1e-07 Score=100.40 Aligned_cols=185 Identities=21% Similarity=0.248 Sum_probs=111.0
Q ss_pred cCHHHHHHHHHHHHHhhcCCC-CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCcccc
Q 005987 153 VQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYT 231 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~-g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~ 231 (666)
..+.++.++...+......+. +..-...+||+|+|||||||+++++|+++|..++|+.+.. ...+. ..
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~e------l~~~s-----~~ 473 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYE------LVAES-----AS 473 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHH------Hhhcc-----cc
Confidence 456666666666654332210 0011247999999999999999999999999999998643 11111 11
Q ss_pred chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc----chhHHHHHHHHHHHHHh----c-CCCceEEEEec
Q 005987 232 SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN----GRTAFERLRQCLLLLVR----S-THIPTAVVLTE 302 (666)
Q Consensus 232 s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~----~~~~~~~l~~~L~~l~~----~-~~~PiViIit~ 302 (666)
.....+..+..+++++. +.||++-.+|-+. +..+ .++...++.++. . ...+++++++.
T Consensus 474 ~~etkl~~~f~~a~~~~------------pavifl~~~dvl~id~dgged-~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 474 HTETKLQAIFSRARRCS------------PAVLFLRNLDVLGIDQDGGED-ARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred hhHHHHHHHHHHHhhcC------------ceEEEEeccceeeecCCCchh-HHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 22345667788887663 6799999888542 2222 234445555544 1 22234444443
Q ss_pred CCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q 005987 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIR 373 (666)
Q Consensus 303 ~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR 373 (666)
+... ..-..+++. ....|.+..++.++...+|+-....+.+. .+..++.++..+.|=.+
T Consensus 541 -~s~~------~lp~~i~~~----f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 541 -SSIE------DLPADIQSL----FLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSF 599 (953)
T ss_pred -cccc------cCCHHHHHh----hhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCH
Confidence 2211 111123332 35689999999999999999877655432 23445666666665444
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.57 E-value=6.6e-07 Score=81.51 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc---EEEEcCCCchhh--hhh-hhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPTPTIW--QEY-MHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~---viE~nasd~~~~--~e~-l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
+.++|+|||||||||+++.+|+.+... ++.++....... ... ................+...+..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL----- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc-----
Confidence 589999999999999999999999765 777665432110 000 000001111122333455555555422
Q ss_pred CCCCCCCCceEEEEeCCCCCcchh
Q 005987 253 SIPGESKSSAILLIDDLPVTNGRT 276 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~~~ 276 (666)
.+.+|+|||++.+....
T Consensus 78 -------~~~viiiDei~~~~~~~ 94 (148)
T smart00382 78 -------KPDVLILDEITSLLDAE 94 (148)
T ss_pred -------CCCEEEEECCcccCCHH
Confidence 13699999999876543
No 187
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=9.1e-07 Score=92.07 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=44.8
Q ss_pred cCCCCcccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 143 YKPRSLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 143 Y~P~sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
|+-.+|+.+.. +...+..++.+++.+... ......++|+||+|+|||+++.++|+++ +..++.++.++
T Consensus 79 ~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~---~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 79 FRNSTFENFLFDKGSEKAYKIARKYVKKFEEM---KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred HHhcchhcccCChHHHHHHHHHHHHHHHHHhh---ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 33444554432 334556666666665321 1112469999999999999999999987 67777776543
No 188
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.49 E-value=7.8e-07 Score=94.21 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=46.6
Q ss_pred ccCCCCccccccC----HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 142 KYKPRSLEELAVQ----RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 142 KY~P~sl~eLvg~----~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
.|...+|+++... .........|+..... +.. .+.++|+||+|||||+++.++|+++ |+.+..+..+
T Consensus 120 ~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~---~~~-~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 120 DLLQASLADIDLDDRDRLDALMAALDFLEAYPP---GEK-VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhc---cCC-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3445666666543 3445556667765432 212 2689999999999999999999998 7777776654
No 189
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.49 E-value=1.6e-05 Score=82.85 Aligned_cols=184 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC---------CcEEEEcCCCc----hhhhhhhhcccCCccccchhHHHH-HHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG---------ARLYEWDTPTP----TIWQEYMHNCKTGLEYTSKLDEFE-NFVERI 244 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg---------~~viE~nasd~----~~~~e~l~~~~~g~~~~s~~~~f~-~fl~~a 244 (666)
+.+||+|++|.|||++++.+++... +.|+.+.+|.. +.|...+................. ..+.-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998762 34555554431 222222222211111122222222 122222
Q ss_pred HhhcCCCCCCCCCCCCceEEEEeCCCCC-cch-hHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHH
Q 005987 245 RRYGSTSPSIPGESKSSAILLIDDLPVT-NGR-TAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSI 322 (666)
Q Consensus 245 ~~~~~l~~s~~~~~~~~~IIlIDEid~l-~~~-~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~ 322 (666)
+.. ..++|+|||++++ .+. ...+.+.++|..+.+..+.|+|++-+.. ....+.. ..-
T Consensus 142 r~~------------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~--------A~~al~~-D~Q 200 (302)
T PF05621_consen 142 RRL------------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE--------AYRALRT-DPQ 200 (302)
T ss_pred HHc------------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH--------HHHHhcc-CHH
Confidence 222 2469999999985 332 2334566778888888888988653321 0111111 122
Q ss_pred HhhcCeeEEEeCCCCHH-HHHHHHHHHHHHhC----CCC-CHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 323 LVDAGARKVALNPITNG-SIKRTLSKICRQEQ----YSL-STEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 323 L~r~r~~~I~F~p~s~~-~i~kiL~~I~~~e~----i~v-~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
+.+ |+..+.+++-..+ +..+.|...-..-. -.+ +++....|...|+|-|-...+.|..+|.
T Consensus 201 La~-RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~ 267 (302)
T PF05621_consen 201 LAS-RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAI 267 (302)
T ss_pred HHh-ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 222 4666666655433 33444433322211 112 4677789999999988888877777664
No 190
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.47 E-value=5e-06 Score=88.92 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=41.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.|..|++++|++..++.+.-.+-.. | ..++||+||||+||||+|+++|+-+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-----~---~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-----G---IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-----C---CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5888999999999988776543210 2 1479999999999999999999998
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.46 E-value=5.7e-06 Score=88.72 Aligned_cols=205 Identities=14% Similarity=0.193 Sum_probs=112.5
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCch--hhhhhhhccc
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT--IWQEYMHNCK 225 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~--~~~e~l~~~~ 225 (666)
|+|+...++++..-++.... .. ..+||+|++||||+++|+++-..- +..++.+|+.... .+...+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~---~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LD---RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CC---CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc
Confidence 46777777888877776532 11 469999999999999999987654 4578888886421 0000000000
Q ss_pred CCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-----------C
Q 005987 226 TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-----------I 294 (666)
Q Consensus 226 ~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-----------~ 294 (666)
.|. ++.....-..+++. .....|+|||++.+... ++..|..+++... .
T Consensus 75 ~g~-~~ga~~~~~G~~~~---------------a~gGtL~Ldei~~L~~~-----~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 75 AGA-FTGAQKRHQGRFER---------------ADGGTLFLDELATASLL-----VQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred ccc-ccCcccccCCchhh---------------CCCCEEEeCChHhCCHH-----HHHHHHHHHHcCcEEecCCCceecc
Confidence 000 00000000000000 12347999999988643 2333444444432 1
Q ss_pred c-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCC--HHHHHHHHHHH----HHHhC----CCCCHHHHHH
Q 005987 295 P-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKI----CRQEQ----YSLSTEQIDL 363 (666)
Q Consensus 295 P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s--~~~i~kiL~~I----~~~e~----i~v~~~~l~~ 363 (666)
. .||++++....... ....+ -..++.+.....|.++|+. .++|..++... +.+.+ ..+++++++.
T Consensus 134 ~~RiI~at~~~l~~~~--~~g~f--r~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~ 209 (329)
T TIGR02974 134 DVRLVCATNADLPALA--AEGRF--RADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQ 209 (329)
T ss_pred ceEEEEechhhHHHHh--hcCch--HHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHH
Confidence 1 23333321110000 00011 1233333335678888887 45665554443 33333 3589999999
Q ss_pred HHHHc-CCcHHHHHHHHHHHhcCC
Q 005987 364 VAQAS-GGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 364 Ia~~s-~GDIR~AIn~LQf~~~~~ 386 (666)
|.... .|++|..-|.++-++...
T Consensus 210 L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 210 LLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhC
Confidence 99886 799999999998887643
No 192
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=3.8e-07 Score=83.71 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=58.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--------CCcEEEEcCCCchhhh----hhhhcccCCccc-cchhHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--------GARLYEWDTPTPTIWQ----EYMHNCKTGLEY-TSKLDEFENFVERIR 245 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--------g~~viE~nasd~~~~~----e~l~~~~~g~~~-~s~~~~f~~fl~~a~ 245 (666)
+.++|+||||+|||++++.+++++ ...++.++.+...... ..+......... ......+..+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999998 6778877765433221 111111111111 112222333344443
Q ss_pred hhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEe
Q 005987 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLT 301 (666)
Q Consensus 246 ~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit 301 (666)
... ..+|+|||+|.+. . ..+.+.|..+.+....++|++.+
T Consensus 85 ~~~------------~~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 85 RRR------------VVLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HCT------------EEEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred hcC------------CeEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 322 2599999999863 1 23444455666655555554433
No 193
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.44 E-value=3.3e-06 Score=90.61 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=44.5
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
+++.+..+..+..++.. | +++||-||||||||++|+.+|+.++..++.++...
T Consensus 26 ~~g~~~~~~~~l~a~~~------~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~ 78 (329)
T COG0714 26 VVGDEEVIELALLALLA------G----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP 78 (329)
T ss_pred eeccHHHHHHHHHHHHc------C----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC
Confidence 56777777777666654 2 57999999999999999999999999999998765
No 194
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.43 E-value=4.1e-06 Score=89.51 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
..++..+.|++.+.. .. +.|+|+||+|+|||+++.++|+++ |+.|+.+++++
T Consensus 167 ~~~~~~~~f~~~f~~---~~---~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 167 KILEKCKNFIENFDK---NN---ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred HHHHHHHHHHHHHhc---cC---CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 344445566665432 11 579999999999999999999997 78888877654
No 195
>PHA02244 ATPase-like protein
Probab=98.43 E-value=1.1e-05 Score=86.46 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+||+||||||||++|+++|+.++..++.++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 59999999999999999999999999998874
No 196
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=2.1e-06 Score=79.12 Aligned_cols=123 Identities=17% Similarity=0.268 Sum_probs=68.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC--CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg--~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~ 256 (666)
++++|+||.||||||+++.+++++. -+++.++..+....... ...+.+.+.+. ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-------------~~~~~~~~~~~--~~-------- 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-------------DPDLLEYFLEL--IK-------- 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-------------hhhhHHHHHHh--hc--------
Confidence 6899999999999999999999986 67777776553221000 00011222111 10
Q ss_pred CCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCC
Q 005987 257 ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPI 336 (666)
Q Consensus 257 ~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~ 336 (666)
....+|+|||++.+.. +...+..+.+....-.|+ ++.+... .......+.+.. |...+++.|+
T Consensus 60 --~~~~~i~iDEiq~~~~------~~~~lk~l~d~~~~~~ii-~tgS~~~-------~l~~~~~~~l~g-r~~~~~l~Pl 122 (128)
T PF13173_consen 60 --PGKKYIFIDEIQYLPD------WEDALKFLVDNGPNIKII-LTGSSSS-------LLSKDIAESLAG-RVIEIELYPL 122 (128)
T ss_pred --cCCcEEEEehhhhhcc------HHHHHHHHHHhccCceEE-EEccchH-------HHhhcccccCCC-eEEEEEECCC
Confidence 1246899999998742 333455555555221233 3332111 011122233333 5778899999
Q ss_pred CHHHH
Q 005987 337 TNGSI 341 (666)
Q Consensus 337 s~~~i 341 (666)
+-.+.
T Consensus 123 sf~E~ 127 (128)
T PF13173_consen 123 SFREF 127 (128)
T ss_pred CHHHh
Confidence 87664
No 197
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.41 E-value=5.9e-06 Score=91.36 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=35.7
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
++|+++.++.+...+.. + .++||.||||||||++|++|++.++
T Consensus 22 i~gre~vI~lll~aala------g----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 22 LYERSHAIRLCLLAALS------G----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCcHHHHHHHHHHHcc------C----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 57888888887776654 2 4799999999999999999999874
No 198
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.39 E-value=9.9e-06 Score=94.76 Aligned_cols=209 Identities=12% Similarity=0.175 Sum_probs=119.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYM 221 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l 221 (666)
+.++++|+|....++++...++.... .. ..+||+|++||||+++|+++.+.. +..++.+|+..... +.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~---~~---~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~--~~~ 392 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK---SS---FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD--EAL 392 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC---cC---CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh--HHH
Confidence 34789999999999999888887543 11 359999999999999999998875 35788888764210 000
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------- 294 (666)
.....|... .....+ ..+.+. ...+..|+|||++.+... ++..|..+++....
T Consensus 393 ~~elfg~~~------------~~~~~~-~~g~~~--~a~~GtL~ldei~~l~~~-----~Q~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 393 AEEFLGSDR------------TDSENG-RLSKFE--LAHGGTLFLEKVEYLSPE-----LQSALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHhcCCCC------------cCccCC-CCCcee--ECCCCEEEEcChhhCCHH-----HHHHHHHHHhcCcEEeCCCCc
Confidence 000001000 000000 000000 012347999999988643 22334444443321
Q ss_pred --c--e-EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHH--HHHHHHHHHHHH----h--CCCCCHHHH
Q 005987 295 --P--T-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG--SIKRTLSKICRQ----E--QYSLSTEQI 361 (666)
Q Consensus 295 --P--i-ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~--~i~kiL~~I~~~----e--~i~v~~~~l 361 (666)
| + ||.+++....... ....+. +.++.+.....|.++|+... ++..++...+.+ . .+.++++++
T Consensus 453 ~~~~~~riI~~t~~~l~~~~--~~~~f~--~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTADLAMLV--EQNRFS--RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDAL 528 (638)
T ss_pred eEEeeEEEEEeccCCHHHHH--hcCCCh--HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHH
Confidence 1 2 3333322110000 001111 22333334677888888764 455555544432 2 256899999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 362 DLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 362 ~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+.|.... .|++|..-|.|+.++..
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHh
Confidence 9999987 79999999999987753
No 199
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.37 E-value=3.7e-06 Score=88.03 Aligned_cols=182 Identities=16% Similarity=0.289 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHH--c--CCcEEEE-cCCCc----hhhhhhhhcc
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH--L--GARLYEW-DTPTP----TIWQEYMHNC 224 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAke--l--g~~viE~-nasd~----~~~~e~l~~~ 224 (666)
+++.+++|.++|.... ...+++.|+|++|+|||++|..+++. . .+..+-| +.... ......+...
T Consensus 1 re~~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccc
Confidence 4678899999998622 22379999999999999999999988 3 3444433 22111 1111111111
Q ss_pred cCC---ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEe
Q 005987 225 KTG---LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLT 301 (666)
Q Consensus 225 ~~g---~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit 301 (666)
... .............+.+. - .+++.+||+|+++... .+..+.. .+.......-+|+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~---L---------~~~~~LlVlDdv~~~~---~~~~l~~----~~~~~~~~~kilvT 135 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLREL---L---------KDKRCLLVLDDVWDEE---DLEELRE----PLPSFSSGSKILVT 135 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHH---H---------CCTSEEEEEEEE-SHH---HH-----------HCHHSS-EEEEE
T ss_pred cccccccccccccccccccchhh---h---------ccccceeeeeeecccc---ccccccc----cccccccccccccc
Confidence 111 00011111222222111 0 1237899999998642 2222222 11111111223444
Q ss_pred cCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCCcHH
Q 005987 302 ECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ---YSLSTEQIDLVAQASGGDIR 373 (666)
Q Consensus 302 ~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~---i~v~~~~l~~Ia~~s~GDIR 373 (666)
.... .... .... ....+.+.+++.++..+.+.+.+.... ....++..+.|++.|+|-.=
T Consensus 136 TR~~--------~v~~----~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 136 TRDR--------SVAG----SLGG-TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp ESCG--------GGGT----THHS-CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred cccc--------cccc----cccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4221 0111 1111 167899999999999999998876544 12224567899999977443
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.35 E-value=5.4e-07 Score=83.95 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=33.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
.+||+||||||||++|+.+|+.++..++.++.+......+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 48999999999999999999999999998887764443333
No 201
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.32 E-value=2e-05 Score=89.37 Aligned_cols=210 Identities=17% Similarity=0.244 Sum_probs=117.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCch--hhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT--IWQE 219 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~--~~~e 219 (666)
..++++|+|....++++..-++.... . . ..+||+|++||||+.+|+++-+.- +..++.+|+.... .+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~---~--~-~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR---S--D-ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC---C--C-CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHH
Confidence 35688999999999999998876432 1 1 469999999999999999998753 5678888886421 0100
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-----
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI----- 294 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~----- 294 (666)
.+.....|.-.......-..+++. .....|+|||++.+... ++..|..+++....
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~---------------A~gGTLfLdeI~~Lp~~-----~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEA---------------AHRGTLFLDEIGEMPLP-----LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HhcCCcccccccccccccccchhh---------------cCCceEEecChHhCCHH-----HHHHHHHHHhcCcEEecCC
Confidence 000000000000000000000111 11347999999988643 23334444444321
Q ss_pred --c-----eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHH----HHHHHHHhCCCCCHHHH
Q 005987 295 --P-----TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRT----LSKICRQEQYSLSTEQI 361 (666)
Q Consensus 295 --P-----iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~ki----L~~I~~~e~i~v~~~~l 361 (666)
| .|+++++....... ....+ ...++.+..+..|.++|+.. +++..+ |.+.+...++.++++++
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v--~~g~f--r~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 417 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAV--QQGRF--RRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAA 417 (526)
T ss_pred CceeeecceEEeccCCCHHHHh--hhcch--hHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1 23333332211000 00011 12333343467889999865 344444 44444444567899988
Q ss_pred HH-------HHHH-cCCcHHHHHHHHHHHhc
Q 005987 362 DL-------VAQA-SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~-------Ia~~-s~GDIR~AIn~LQf~~~ 384 (666)
.. |... -.|++|..-|.++-++.
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 77 5544 45999999999998875
No 202
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.32 E-value=2.2e-06 Score=83.07 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC----cEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA----RLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~----~viE~nasd 213 (666)
..+||+||+|||||.+|++||+.+.. .++.++++.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE 42 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc
Confidence 57999999999999999999999996 888888765
No 203
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.29 E-value=2.4e-05 Score=89.11 Aligned_cols=211 Identities=13% Similarity=0.201 Sum_probs=117.9
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh--hh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~--~~ 218 (666)
...+|++++|....++++...++.... . . ..+||+|++||||+++|+++-... +..++.+|+..... +.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~---~--~-~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM---L--D-APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC---C--C-CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 456899999999999999888876432 1 1 469999999999999999986543 34678888764210 00
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-----
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----- 293 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~----- 293 (666)
..+.....|. +......-..+++. .....|+|||++.+... ++..|..+++.+.
T Consensus 273 ~elFG~~~~~-~~~~~~~~~g~~e~---------------a~~GtL~LdeI~~L~~~-----~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 273 SELFGHAPGA-YPNALEGKKGFFEQ---------------ANGGSVLLDEIGEMSPR-----MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHhcCCCCCC-cCCcccCCCChhhh---------------cCCCEEEEeChhhCCHH-----HHHHHHHHHhcCCcccCC
Confidence 0000000000 00000000000111 11247899999988643 2223444444432
Q ss_pred ------CceEEEEecCCCCCCccch-hhhhhHHHHHHhhcCeeEEEeCCCCHH--HHHHH----HHHHHHHhC---CCCC
Q 005987 294 ------IPTAVVLTECGKADSVDST-AQSFEELQSILVDAGARKVALNPITNG--SIKRT----LSKICRQEQ---YSLS 357 (666)
Q Consensus 294 ------~PiViIit~~~~~~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s~~--~i~ki----L~~I~~~e~---i~v~ 357 (666)
..+-+|++...... +.. ...+. ..+..+..+..|.++|+... ++..+ |.+.+.+.+ ..++
T Consensus 332 ~~~~~~~~vRiI~st~~~l~--~l~~~g~f~--~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLV--ELVQKGEFR--EDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCcceeeeeEEEEecCCCHH--HHHHcCCcc--HHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11223333221100 000 00010 12333334678889888663 34433 444455444 3689
Q ss_pred HHHHHHHHHH-cCCcHHHHHHHHHHHhcC
Q 005987 358 TEQIDLVAQA-SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 358 ~~~l~~Ia~~-s~GDIR~AIn~LQf~~~~ 385 (666)
+++++.|... -.|++|..-|.|+-++..
T Consensus 408 ~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 408 ADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 9999999887 679999999999877653
No 204
>PRK08181 transposase; Validated
Probab=98.29 E-value=1.9e-06 Score=89.50 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=28.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
..++|+||||||||+++.++|+++ |+.++.++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 479999999999999999999865 7777776654
No 205
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.26 E-value=3.9e-05 Score=87.07 Aligned_cols=209 Identities=16% Similarity=0.219 Sum_probs=115.1
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHH-----------cCCcEEEEcCCCc
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH-----------LGARLYEWDTPTP 214 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAke-----------lg~~viE~nasd~ 214 (666)
.++++|+|+...+++++.-++.... . . ..+||+|++||||+.+|+++-+. -+..++.+|+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~---s--~-~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal 289 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR---S--S-AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 289 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC---C--C-CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC
Confidence 3688999999999999998876432 1 1 46999999999999999999876 3567888887642
Q ss_pred h--hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC
Q 005987 215 T--IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (666)
Q Consensus 215 ~--~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~ 292 (666)
. .+...+.....|.-.......-..+++. .....|+|||++.+... ++..|..+++..
T Consensus 290 ~e~lleseLFG~~~gaftga~~~~~~Gl~e~---------------A~gGTLfLdeI~~Lp~~-----~Q~kLl~~L~e~ 349 (538)
T PRK15424 290 AESLLEAELFGYEEGAFTGSRRGGRAGLFEI---------------AHGGTLFLDEIGEMPLP-----LQTRLLRVLEEK 349 (538)
T ss_pred ChhhHHHHhcCCccccccCccccccCCchhc---------------cCCCEEEEcChHhCCHH-----HHHHHHhhhhcC
Confidence 1 0100000000000000000000000010 11347999999988643 233344444443
Q ss_pred C-------Cc-----eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHHHHH----HhCC
Q 005987 293 H-------IP-----TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICR----QEQY 354 (666)
Q Consensus 293 ~-------~P-----iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~I~~----~e~i 354 (666)
. .| .||++++....... ....+. ..++.+..+..|.++|+.. +++..++...+. ..+.
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v--~~g~Fr--~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDV--RQGRFR--RDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHH--hcccch--HHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 2 11 23333432210000 000011 1233344567888888865 455555554443 3566
Q ss_pred CCCHHHHH-------HHHHH-cCCcHHHHHHHHHHHhc
Q 005987 355 SLSTEQID-------LVAQA-SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 355 ~v~~~~l~-------~Ia~~-s~GDIR~AIn~LQf~~~ 384 (666)
.++++++. .|... -.|++|..-|.++-++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 67887763 33322 45999999999998775
No 206
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.4e-05 Score=82.51 Aligned_cols=95 Identities=24% Similarity=0.372 Sum_probs=58.0
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHH---HhhcCCCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERI---RRYGSTSPS 253 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a---~~~~~l~~s 253 (666)
.+..+||.||+|||||.+|+.||+.++..+.--.+..- +...|. .++.+.++.++ ..|..
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL-----------TEAGYV--GEDVENillkLlqaadydV---- 158 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL-----------TEAGYV--GEDVENILLKLLQAADYDV---- 158 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch-----------hhcccc--chhHHHHHHHHHHHcccCH----
Confidence 34579999999999999999999999988766555431 111111 12333333332 22221
Q ss_pred CCCCCCCceEEEEeCCCCCcch--------h-HHHHHHHHHHHHHhc
Q 005987 254 IPGESKSSAILLIDDLPVTNGR--------T-AFERLRQCLLLLVRS 291 (666)
Q Consensus 254 ~~~~~~~~~IIlIDEid~l~~~--------~-~~~~l~~~L~~l~~~ 291 (666)
..-.+-||.|||+|.+... + .-++++++|+.+++.
T Consensus 159 ---~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 159 ---ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred ---HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 0112459999999965311 1 124677888888865
No 207
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.23 E-value=3.7e-06 Score=87.12 Aligned_cols=80 Identities=10% Similarity=0.180 Sum_probs=63.4
Q ss_pred eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcC
Q 005987 296 TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE------QYSLSTEQIDLVAQASG 369 (666)
Q Consensus 296 iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e------~i~v~~~~l~~Ia~~s~ 369 (666)
.|++++.++.+++ +.-..++++ ||.++.|++++.+++.++|++.+..+ .+.+++++++.|+..|+
T Consensus 8 ~i~LIGATTENP~-------f~vn~ALlS--R~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~ 78 (300)
T PRK14700 8 KIILIGATTENPT-------YYLNDALVS--RLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNE 78 (300)
T ss_pred cEEEEeecCCCcc-------ceecHhhhh--hhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcC
Confidence 4556666655542 322344444 59999999999999999999999753 36799999999999999
Q ss_pred CcHHHHHHHHHHHhc
Q 005987 370 GDIRQAITSLQFSSL 384 (666)
Q Consensus 370 GDIR~AIn~LQf~~~ 384 (666)
||.|.|+|.|+.++.
T Consensus 79 GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 79 GDCRKILNLLERMFL 93 (300)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999763
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.20 E-value=3.8e-06 Score=76.53 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=23.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
++||.|+||+|||++|+++|+.+|..+..+...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 489999999999999999999999998877543
No 209
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.19 E-value=5.6e-05 Score=89.15 Aligned_cols=208 Identities=15% Similarity=0.213 Sum_probs=116.9
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCch--hhhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT--IWQEY 220 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~--~~~e~ 220 (666)
..+++++|+...++.+.+-++.+.. .. ..+||+|++|||||++|+++.... +..++.+++.... .+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~---~~---~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~ 446 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ---SD---STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 446 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC---CC---CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhh
Confidence 4678999999999999888886532 11 369999999999999999998764 5688888876421 11111
Q ss_pred hhcccCCccccch-hHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC------
Q 005987 221 MHNCKTGLEYTSK-LDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------ 293 (666)
Q Consensus 221 l~~~~~g~~~~s~-~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~------ 293 (666)
+.....|. +... .... ..++.+ .+.+|+|||++.+... ++..|..+++.+.
T Consensus 447 lfg~~~~~-~~g~~~~~~-g~le~a---------------~~GtL~Ldei~~L~~~-----~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 447 LFGHERGA-FTGASAQRI-GRFELA---------------DKSSLFLDEVGDMPLE-----LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hcCccccc-ccccccchh-hHHHhc---------------CCCeEEEechhhCCHH-----HHHHHHHHHHhCCEEeCCC
Confidence 11000010 0000 0000 011111 1237999999988643 2323444444321
Q ss_pred -----Cc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHH----HHHHHHHhCC---CCCH
Q 005987 294 -----IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRT----LSKICRQEQY---SLST 358 (666)
Q Consensus 294 -----~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~ki----L~~I~~~e~i---~v~~ 358 (666)
.. .||.+++...... .....+. ..+..+.....|.++|+.. ++|..+ |.+++.+.+. .+++
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~--~~~~~f~--~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKM--VADREFR--SDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCcccceEEEEEeCCCCHHHH--HHcCccc--HHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 11 2333332111000 0000110 1233333466788888865 344433 3444443332 4789
Q ss_pred HHHHHHHHH-cCCcHHHHHHHHHHHhcC
Q 005987 359 EQIDLVAQA-SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 359 ~~l~~Ia~~-s~GDIR~AIn~LQf~~~~ 385 (666)
++++.|... -.|++|..-|.++-++..
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 999999876 359999999999988764
No 210
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.18 E-value=4.1e-05 Score=82.13 Aligned_cols=208 Identities=14% Similarity=0.193 Sum_probs=115.2
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh--hhhhhh
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYMH 222 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~--~~e~l~ 222 (666)
+++|+|....++++.+-++.... .. ..+||+|++||||+++|+++-..- +..++.+++..... +...+.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~---~~---~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP---LD---KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC---CC---CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 56789999999999998887643 12 369999999999999999987654 35688888765210 000000
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC--------
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------- 294 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~-------- 294 (666)
....|. +......-...++. .....|+|||++.+... .+..|..+++.+..
T Consensus 79 g~~~~~-~~g~~~~~~g~l~~---------------a~gGtL~l~~i~~L~~~-----~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 79 GHEAGA-FTGAQKRHPGRFER---------------ADGGTLFLDELATAPML-----VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred cccccc-cCCcccccCCchhc---------------cCCCeEEeCChhhCCHH-----HHHHHHHHHhcCcEEeCCCCce
Confidence 000000 00000000000110 11237899999988643 23334444544321
Q ss_pred ---ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHH----HHHHhC----CCCCHHHH
Q 005987 295 ---PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSK----ICRQEQ----YSLSTEQI 361 (666)
Q Consensus 295 ---PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~----I~~~e~----i~v~~~~l 361 (666)
.+-+|++......... ....+ ...++.+..+..|.++|+.. ++|..++.. .+...+ ..++++++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~-~~g~f--~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMV-AEGKF--RADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHH-HcCCc--hHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1233333211100000 00011 12333333466788988865 344444433 344433 35899999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 362 DLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 362 ~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
..|.... .|++|..-|.++-++..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9998874 59999999999988763
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.17 E-value=2.9e-06 Score=90.65 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=50.3
Q ss_pred ccCCCCcc-ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 142 KYKPRSLE-ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 142 KY~P~sl~-eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
.++-.-|+ +++|+++.+.++..|++.+.... ....++++|+||||+||||+|++||+.++-
T Consensus 43 ~~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 43 IKRYRFFDHDFFGMEEAIERFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred eeeccccchhccCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35555677 89999999999999999877532 223479999999999999999999999953
No 212
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.14 E-value=4.3e-05 Score=71.90 Aligned_cols=33 Identities=45% Similarity=0.663 Sum_probs=26.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
-+.++||||+||||++..+|..+ |+.+.-+-++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 48999999999999999999877 4555444433
No 213
>PF05729 NACHT: NACHT domain
Probab=98.14 E-value=3.9e-05 Score=72.81 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=45.7
Q ss_pred CceEEEEeCCCCCcchhH---HHHHHHHHHHHHhc--C-CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEe
Q 005987 260 SSAILLIDDLPVTNGRTA---FERLRQCLLLLVRS--T-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVAL 333 (666)
Q Consensus 260 ~~~IIlIDEid~l~~~~~---~~~l~~~L~~l~~~--~-~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F 333 (666)
.+.+||||-+|.+..... ...+.+.|..++.. . ...+++.+.. . ....+...+.. ...+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~-~----------~~~~~~~~~~~--~~~~~l 147 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP-R----------AFPDLRRRLKQ--AQILEL 147 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC-C----------hHHHHHHhcCC--CcEEEE
Confidence 467999999998754321 22344456556655 2 2233333222 1 12224444432 357899
Q ss_pred CCCCHHHHHHHHHHHHH
Q 005987 334 NPITNGSIKRTLSKICR 350 (666)
Q Consensus 334 ~p~s~~~i~kiL~~I~~ 350 (666)
.+.+..++.+++++...
T Consensus 148 ~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987653
No 214
>PRK06921 hypothetical protein; Provisional
Probab=98.13 E-value=1.5e-05 Score=82.89 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=28.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
+.++|+||||+|||+++.++|+++ |..++.+..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 579999999999999999999986 566666664
No 215
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.13 E-value=0.00012 Score=83.26 Aligned_cols=209 Identities=14% Similarity=0.153 Sum_probs=117.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh--hhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYM 221 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~--~~e~l 221 (666)
...+++|+...++++.+-++.... . . ..+||+|++||||+++|+++.... +..++.+|+..... ....+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~---~--~-~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA---S--D-LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC---C--C-CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 567889999999999999987532 1 1 469999999999999999998874 46788888765211 00000
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------- 294 (666)
.....|. +......-...++. ..+..|+|||++.+... ++..|..+++.+..
T Consensus 259 fG~~~g~-~~ga~~~~~g~~~~---------------a~gGtL~ldeI~~L~~~-----~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 259 FGHVKGA-FTGAISNRSGKFEL---------------ADGGTLFLDEIGELPLA-----LQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred cCccccc-cCCCcccCCcchhh---------------cCCCEEEecChhhCCHH-----HHHHHHHHHhcCCEeeCCCCc
Confidence 0000000 00000000000011 11237899999988643 22234444444321
Q ss_pred -----ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHH----HHHHHh---CCCCCHHH
Q 005987 295 -----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLS----KICRQE---QYSLSTEQ 360 (666)
Q Consensus 295 -----PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~----~I~~~e---~i~v~~~~ 360 (666)
..||++++...... .....+ ...++.+.....|.++|+.. ++|..+.. +.+.+. .+.+++++
T Consensus 318 ~~~~~~RiI~~t~~~l~~~--~~~~~f--~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREE--VRAGRF--RADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred ceecceEEEEecCCCHHHH--HHcCCc--cHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 13343443211000 000001 01222333355688888865 34444433 333332 25689999
Q ss_pred HHHHHHHc-CCcHHHHHHHHHHHhcCC
Q 005987 361 IDLVAQAS-GGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 361 l~~Ia~~s-~GDIR~AIn~LQf~~~~~ 386 (666)
++.|.... .|++|..-|.++-++...
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 99999874 599999999999887643
No 216
>PRK06526 transposase; Provisional
Probab=98.12 E-value=3.2e-06 Score=87.19 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
..++|+||||||||+++.+|+.++ |+.++...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 479999999999999999999886 66655443
No 217
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00013 Score=79.98 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=102.0
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~ 254 (666)
+.+...+||+||||+|||++|-.+|..-++.++.+..|+. -.|.....+...+...++.+.+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----------miG~sEsaKc~~i~k~F~DAYkS------- 597 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----------MIGLSESAKCAHIKKIFEDAYKS------- 597 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----------ccCccHHHHHHHHHHHHHHhhcC-------
Confidence 3444689999999999999999999999999999887752 23444344455566666666322
Q ss_pred CCCCCCceEEEEeCCCCCc-----chhHHHHHHHHHHHHHhcCCC--ceEEEEecCCCCCCccchhhhhhHHHHHHhhcC
Q 005987 255 PGESKSSAILLIDDLPVTN-----GRTAFERLRQCLLLLVRSTHI--PTAVVLTECGKADSVDSTAQSFEELQSILVDAG 327 (666)
Q Consensus 255 ~~~~~~~~IIlIDEid~l~-----~~~~~~~l~~~L~~l~~~~~~--PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r 327 (666)
+-.||+|||+..+- +...-+-+.++|.-+++.... --.+|++++... ...+.+. ++. +.
T Consensus 598 -----~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~----~vL~~m~----i~~-~F 663 (744)
T KOG0741|consen 598 -----PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR----EVLQEMG----ILD-CF 663 (744)
T ss_pred -----cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH----HHHHHcC----HHH-hh
Confidence 23599999987642 111223344556666654321 123333332210 0111111 111 12
Q ss_pred eeEEEeCCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHhc
Q 005987 328 ARKVALNPITN-GSIKRTLSKICRQEQYSLSTEQIDLVAQASGG-----DIRQAITSLQFSSL 384 (666)
Q Consensus 328 ~~~I~F~p~s~-~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G-----DIR~AIn~LQf~~~ 384 (666)
...|+.+.++. +++.++|... + .++++.+..+++.-.+ -|.+.+..++++..
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~~----n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEEL----N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred hheeecCccCchHHHHHHHHHc----c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 34677777766 6666666532 2 2456666666655333 37777777777654
No 218
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00036 Score=70.56 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=116.0
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-Cc--EEEEcCCCch--hhhhhhhcccC
Q 005987 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-AR--LYEWDTPTPT--IWQEYMHNCKT 226 (666)
Q Consensus 152 vg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-~~--viE~nasd~~--~~~e~l~~~~~ 226 (666)
.-|++.+..+...+.. +. .++.++|+-|+|||.+.|+++..++ -. ++.+.++... ...+.+.....
T Consensus 34 a~h~e~l~~l~~~i~d------~q---g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 34 ADHNEALLMLHAAIAD------GQ---GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhHHHHHHHHHHhc------CC---ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 3455566665554443 22 4899999999999999997777663 22 2334443311 11111111111
Q ss_pred Cc---cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce-EEEEec
Q 005987 227 GL---EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLTE 302 (666)
Q Consensus 227 g~---~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi-ViIit~ 302 (666)
+. ..........+.+....+.+ +++.++++||++.+... ..+.++- |.++......|. |++++-
T Consensus 105 ~~p~~~~~~~~e~~~~~L~al~~~g----------~r~v~l~vdEah~L~~~-~le~Lrl-l~nl~~~~~~~l~ivL~Gq 172 (269)
T COG3267 105 SQPKVNVNAVLEQIDRELAALVKKG----------KRPVVLMVDEAHDLNDS-ALEALRL-LTNLEEDSSKLLSIVLIGQ 172 (269)
T ss_pred cCccchhHHHHHHHHHHHHHHHHhC----------CCCeEEeehhHhhhChh-HHHHHHH-HHhhcccccCceeeeecCC
Confidence 10 01112333334444333222 35689999999977653 2333332 333333444453 333443
Q ss_pred CCCCCCccchhhhhhHHHHHHhhcCeeE-EEeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCcHHHHHHH
Q 005987 303 CGKADSVDSTAQSFEELQSILVDAGARK-VALNPITNGSIKRTLSKICRQEQYS---LSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 303 ~~~~~s~d~~~r~l~~L~s~L~r~r~~~-I~F~p~s~~~i~kiL~~I~~~e~i~---v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
.... ... ....++++-. ||.. |...|++.++...+|+..++..+.. ++++++..|...+.| +-.+||+
T Consensus 173 p~L~----~~l-r~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~ 244 (269)
T COG3267 173 PKLR----PRL-RLPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINN 244 (269)
T ss_pred cccc----hhh-chHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHH
Confidence 2111 111 2223444433 4666 9999999999999999988776532 678999999999999 6678888
Q ss_pred HHHHhc
Q 005987 379 LQFSSL 384 (666)
Q Consensus 379 LQf~~~ 384 (666)
+--.|+
T Consensus 245 ~~~~Al 250 (269)
T COG3267 245 LATLAL 250 (269)
T ss_pred HHHHHH
Confidence 755544
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.09 E-value=2.9e-06 Score=82.91 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=28.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
..++|+||||+|||++|.++|+++ |+.+..++.++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 579999999999999999999987 88888777543
No 220
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.07 E-value=3.7e-06 Score=81.33 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHH
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGS 340 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~ 340 (666)
..+|+|||+-.+--.. ..+.+++..+++ +..|+|.++-... ..+-++.+..+..+..+...+-+.+.
T Consensus 96 ~~liviDEIG~mEl~~--~~F~~~v~~~l~-s~~~vi~vv~~~~----------~~~~l~~i~~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 96 SDLIVIDEIGKMELKS--PGFREAVEKLLD-SNKPVIGVVHKRS----------DNPFLEEIKRRPDVKIFEVTEENRDA 162 (168)
T ss_dssp CHEEEE---STTCCC---CHHHHHHHHHHC-TTSEEEEE--SS------------SCCHHHHHTTTTSEEEE--TTTCCC
T ss_pred CCEEEEeccchhhhcC--HHHHHHHHHHHc-CCCcEEEEEecCC----------CcHHHHHHHhCCCcEEEEeChhHHhh
Confidence 4599999998763321 345666777777 5556665554321 11124444455568888888877666
Q ss_pred HHH
Q 005987 341 IKR 343 (666)
Q Consensus 341 i~k 343 (666)
+..
T Consensus 163 l~~ 165 (168)
T PF03266_consen 163 LPE 165 (168)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 221
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.04 E-value=2.6e-05 Score=81.35 Aligned_cols=170 Identities=14% Similarity=0.215 Sum_probs=83.3
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc---EEEEcCCCchhhhhhhhcc
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPTPTIWQEYMHNC 224 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~---viE~nasd~~~~~e~l~~~ 224 (666)
+.+++++-........+++.++.. + +.+||+||+|||||++++.+-+.+.-. +..++.+..+
T Consensus 9 ~~~~~VpT~dt~r~~~ll~~l~~~---~---~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T--------- 73 (272)
T PF12775_consen 9 FNEILVPTVDTVRYSYLLDLLLSN---G---RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT--------- 73 (272)
T ss_dssp ----T---HHHHHHHHHHHHHHHC---T---EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH---------
T ss_pred cceEEeCcHHHHHHHHHHHHHHHc---C---CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC---------
Confidence 556777666666677777776652 2 579999999999999998877766422 3334433211
Q ss_pred cCCccccchhHHHHHHHHHHHhhcCCCCCCCC-CCCCceEEEEeCCCCCcchh-HHHHHHHHHHHHHhcCCC--------
Q 005987 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPG-ESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTHI-------- 294 (666)
Q Consensus 225 ~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~-~~~~~~IIlIDEid~l~~~~-~~~~l~~~L~~l~~~~~~-------- 294 (666)
....++.+++.. ...-.....| ..+++.|++|||+..-.... .-....+.|+++++.+..
T Consensus 74 --------ts~~~q~~ie~~--l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~ 143 (272)
T PF12775_consen 74 --------TSNQLQKIIESK--LEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEW 143 (272)
T ss_dssp --------HHHHHHHCCCTT--ECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEE
T ss_pred --------CHHHHHHHHhhc--EEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEE
Confidence 111222222211 0000000000 12356799999997532110 012244667777765310
Q ss_pred ----ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 295 ----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 295 ----PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
-+.++++ .+... . +. .+..++.| .+.++.+.+|+.+.+..+...++..
T Consensus 144 ~~i~~i~~vaa-~~p~~--G---r~--~is~R~~r-~f~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 144 KSIEDIQFVAA-MNPTG--G---RN--PISPRFLR-HFNILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEECSEEEEEE-ESSTT--T-------SHHHHHHT-TEEEEE----TCCHHHHHHHHHHHH
T ss_pred EEEeeeEEEEe-cCCCC--C---CC--CCChHHhh-heEEEEecCCChHHHHHHHHHHHhh
Confidence 2333333 22211 1 11 23444444 4889999999999999998888764
No 222
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.04 E-value=9.6e-05 Score=79.37 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=39.8
Q ss_pred CCC-CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 144 KPR-SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 144 ~P~-sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+|. .|.+++||++....+...+.+ .+. ..+||.||+|+||||+++.+++-+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~------p~~--~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVID------PKI--GGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccC------CCC--CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 444 789999999877776554443 222 468999999999999999998876
No 223
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=0.00016 Score=70.20 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=45.9
Q ss_pred CceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHH
Q 005987 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG 339 (666)
Q Consensus 260 ~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~ 339 (666)
.+.+|+|||+..+.... ..+.+.+..+++. ..|+|+++..... . ..+..+..++.+..+.+.+-+.+
T Consensus 96 ~~~~lllDE~~~~e~~~--~~~~~~l~~~~~~-~~~~i~v~h~~~~-------~---~~~~~i~~~~~~~i~~~~~~~r~ 162 (174)
T PRK13695 96 EADVIIIDEIGKMELKS--PKFVKAVEEVLDS-EKPVIATLHRRSV-------H---PFVQEIKSRPGGRVYELTPENRD 162 (174)
T ss_pred CCCEEEEECCCcchhhh--HHHHHHHHHHHhC-CCeEEEEECchhh-------H---HHHHHHhccCCcEEEEEcchhhh
Confidence 35689999975443221 3345667777744 4577666654211 1 12344555667888999888888
Q ss_pred HHHHHHHHH
Q 005987 340 SIKRTLSKI 348 (666)
Q Consensus 340 ~i~kiL~~I 348 (666)
+|...+...
T Consensus 163 ~~~~~~~~~ 171 (174)
T PRK13695 163 SLPFEILNR 171 (174)
T ss_pred hHHHHHHHH
Confidence 777665543
No 224
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.03 E-value=0.00021 Score=76.75 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=36.7
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
|..++||++.+..+.-.+-+ ... ..++|.||||+||||++++++.-+
T Consensus 3 f~~ivgq~~~~~al~~~~~~------~~~--g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID------PKI--GGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcC------CCC--CeEEEEcCCCCCHHHHHHHHHHhh
Confidence 56789999888776444332 111 469999999999999999999887
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=97.99 E-value=3.4e-06 Score=99.37 Aligned_cols=51 Identities=29% Similarity=0.660 Sum_probs=45.3
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHH
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtl 194 (666)
..+|++||||++|+|++||+..++.++.+++. ++.+ +++|+||||+||+.+
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~------~~i~--h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT------GSMP--HLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC--eEEEECCCCCCcccc
Confidence 46899999999999999999999999999986 5665 577999999999754
No 226
>PHA02774 E1; Provisional
Probab=97.98 E-value=7e-05 Score=84.10 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-Ec
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WD 210 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~n 210 (666)
+.+..+.++|+||||+|||.++-+|++.++..++- +|
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 34434689999999999999999999999877765 44
No 227
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.95 E-value=0.00037 Score=81.34 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=37.5
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
|.+|+||+..+..+.-.+.+ +.. ..+||.||+|||||++|++|++.+
T Consensus 3 f~~ivGq~~~~~al~~~av~------~~~--g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD------PRI--GGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhhC------CCC--CeEEEEcCCCCcHHHHHHHHHHhC
Confidence 56899999888776554443 222 369999999999999999999987
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.95 E-value=9.1e-05 Score=76.52 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
++.+.+..+....+ |+. ....++|+||||+|||++|-++|+++ |..|+.++.++
T Consensus 87 ~~~~~l~~~~~~~~-~~~------~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 87 IDKKALEDLASLVE-FFE------RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred hhHHHHHHHHHHHH-Hhc------cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34555666655544 332 12579999999999999999999998 77888877664
No 229
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00017 Score=84.87 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=71.9
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcccC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~~~ 226 (666)
.++||+.++..|...+..........-+.-.++|.||.|+|||-+|++||..+ .-.++.++.+......+.+.. ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligs-p~ 641 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGS-PP 641 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCC-Cc
Confidence 37899999999999998765432221133579999999999999999999998 224455554431111111111 11
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~ 292 (666)
|..-....+. +-+.+++ ++..|||+|||+..+. .++..|.++++.+
T Consensus 642 gyvG~e~gg~---Lteavrr------------rP~sVVLfdeIEkAh~-----~v~n~llq~lD~G 687 (898)
T KOG1051|consen 642 GYVGKEEGGQ---LTEAVKR------------RPYSVVLFEEIEKAHP-----DVLNILLQLLDRG 687 (898)
T ss_pred ccccchhHHH---HHHHHhc------------CCceEEEEechhhcCH-----HHHHHHHHHHhcC
Confidence 1110111222 2233322 2457999999996542 3445566666654
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=97.94 E-value=3.7e-05 Score=79.67 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
..++|+||||||||+++.+++.++ |+.+..++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 479999999999999999997764 7777776643
No 231
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.93 E-value=0.00044 Score=76.41 Aligned_cols=203 Identities=14% Similarity=0.213 Sum_probs=116.9
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhh
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~ 222 (666)
....+|+|+...+++|+.-+...-. .. -.+||+|++||||-.+|++|-+.- +..++.+|+..... +.+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~---s~---a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~--~l~E 209 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP---SD---ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE--NLLE 209 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC---CC---CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH--HHHH
Confidence 3567899999999999999986432 11 369999999999999999997764 56788888764210 0000
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC---------CCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES---------KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~---------~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~ 293 (666)
... |+.-.+.++|.. -..-.|++|||-.+.-. ++.-|+..++...
T Consensus 210 SEL---------------------FGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~-----~Q~kLLRvLqe~~ 263 (464)
T COG2204 210 SEL---------------------FGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE-----LQVKLLRVLQERE 263 (464)
T ss_pred HHh---------------------hcccccCcCCcccccCcceeEcCCceEEeeccccCCHH-----HHHHHHHHHHcCe
Confidence 000 111111111110 12347999999877532 2222344444332
Q ss_pred C-------c---eEEEEecCCCCCCccc--hhhhhhHHHHHHhhcCeeEEEeCCCCH--H----HHHHHHHHHHHHhC--
Q 005987 294 I-------P---TAVVLTECGKADSVDS--TAQSFEELQSILVDAGARKVALNPITN--G----SIKRTLSKICRQEQ-- 353 (666)
Q Consensus 294 ~-------P---iViIit~~~~~~s~d~--~~r~l~~L~s~L~r~r~~~I~F~p~s~--~----~i~kiL~~I~~~e~-- 353 (666)
+ | -|=|++.++.+- ... ..+.-++|- .|.....|+++|+-. + ....+|++.|...+
T Consensus 264 ~~rvG~~~~i~vdvRiIaaT~~dL-~~~v~~G~FReDLy---yRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~ 339 (464)
T COG2204 264 FERVGGNKPIKVDVRIIAATNRDL-EEEVAAGRFREDLY---YRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP 339 (464)
T ss_pred eEecCCCcccceeeEEEeecCcCH-HHHHHcCCcHHHHH---hhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC
Confidence 1 1 122333332210 000 011112222 222345566666643 2 23445566666554
Q ss_pred -CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhcCC
Q 005987 354 -YSLSTEQIDLVAQAS-GGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 354 -i~v~~~~l~~Ia~~s-~GDIR~AIn~LQf~~~~~ 386 (666)
..++++++..|.... .|++|...|.++-++...
T Consensus 340 ~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 340 PKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 458899999998774 599999999999988754
No 232
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=0.00025 Score=76.96 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=113.5
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCCchh-hh--
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPTPTI-WQ-- 218 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd~~~-~~-- 218 (666)
..+.+|+|.....+++++-++.. . +....+||.|++|+||+.+|+.+...- +..++.+||..... ..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~-a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY-A-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh-C-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH
Confidence 35788999999988888888762 1 112579999999999999999887432 45678888765210 00
Q ss_pred hhhh---cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-
Q 005987 219 EYMH---NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI- 294 (666)
Q Consensus 219 e~l~---~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~- 294 (666)
+.++ ...+|..+. .. .+++. -....+++||+..+... .+..|..+++.+.+
T Consensus 149 eLFG~~kGaftGa~~~-k~----Glfe~---------------A~GGtLfLDEI~~LP~~-----~Q~kLl~~le~g~~~ 203 (403)
T COG1221 149 ELFGHEKGAFTGAQGG-KA----GLFEQ---------------ANGGTLFLDEIHRLPPE-----GQEKLLRVLEEGEYR 203 (403)
T ss_pred HHhccccceeecccCC-cC----chhee---------------cCCCEEehhhhhhCCHh-----HHHHHHHHHHcCceE
Confidence 0000 000110000 00 00111 12348999999987643 23335555554311
Q ss_pred ---------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHH--HH----HHHHHHHHHHhCCCC---
Q 005987 295 ---------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG--SI----KRTLSKICRQEQYSL--- 356 (666)
Q Consensus 295 ---------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~--~i----~kiL~~I~~~e~i~v--- 356 (666)
.-|-++++++.. .....+.. ..+..|.-...|+++|+... ++ .-.|...|.+.+..+
T Consensus 204 rvG~~~~~~~dVRli~AT~~~----l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~ 278 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTED----LEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVD 278 (403)
T ss_pred ecCCCCCcCCCceeeeccccC----HHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 112223332221 11111110 13333334667888888654 22 233444555555443
Q ss_pred CHHHHHHHHHH-cCCcHHHHHHHHHHHhcCC
Q 005987 357 STEQIDLVAQA-SGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 357 ~~~~l~~Ia~~-s~GDIR~AIn~LQf~~~~~ 386 (666)
+++++..+... ..|+||..-|.++++|...
T Consensus 279 ~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 279 SPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 34666666654 6799999999999999754
No 233
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=0.00037 Score=86.98 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+..+++++|.+..++++..+|.-. ....+++-|+||+|+||||+|+++++.+.
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLE------SEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccc------cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 346778999999999999988531 11236899999999999999999988873
No 234
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.90 E-value=4.1e-05 Score=68.28 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEECCCCchHHHHHHHHHHHcC
Q 005987 181 LVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg 203 (666)
+.|+||||+|||++++.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999884
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.00039 Score=84.61 Aligned_cols=191 Identities=15% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEE--cCCC--c-hhhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW--DTPT--P-TIWQ 218 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~--nasd--~-~~~~ 218 (666)
.|..-..++.++...+.+... . ..+.++|+||+|.||||++..++...+ .+.=+ ...| + +.|.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~----------~-~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA----------N-NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhcc----------c-CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHH
Confidence 466677888888777666421 1 126899999999999999999988776 43322 2222 1 1222
Q ss_pred hhhhcc---cCCc-----------cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHH
Q 005987 219 EYMHNC---KTGL-----------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (666)
Q Consensus 219 e~l~~~---~~g~-----------~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~ 284 (666)
..+... ..+. ........+..++..+.. ...+.+|+|||++.+.... +.+.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~lvlDD~h~~~~~~----~~~~ 141 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELAD-----------WHQPLYLVIDDYHLITNPE----IHEA 141 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhc-----------CCCCEEEEEeCcCcCCChH----HHHH
Confidence 211111 0010 000001122233333221 1357899999999875432 2334
Q ss_pred HHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeC--CCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 285 LLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALN--PITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 285 L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~--p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
|..+++... ...++| +....+.. .+..++ .+..+..|... +++.+++...+... .+..++++.+
T Consensus 142 l~~l~~~~~~~~~lv~-~sR~~~~~------~~~~l~---~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~ 208 (903)
T PRK04841 142 MRFFLRHQPENLTLVV-LSRNLPPL------GIANLR---VRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAES 208 (903)
T ss_pred HHHHHHhCCCCeEEEE-EeCCCCCC------chHhHH---hcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHH
Confidence 555555543 234444 33322110 011111 11123444444 88999999888754 3567899999
Q ss_pred HHHHHHcCCcHHH
Q 005987 362 DLVAQASGGDIRQ 374 (666)
Q Consensus 362 ~~Ia~~s~GDIR~ 374 (666)
..|.+.|+|.+-.
T Consensus 209 ~~l~~~t~Gwp~~ 221 (903)
T PRK04841 209 SRLCDDVEGWATA 221 (903)
T ss_pred HHHHHHhCChHHH
Confidence 9999999998754
No 236
>PHA00729 NTP-binding motif containing protein
Probab=97.84 E-value=9.6e-05 Score=74.36 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=25.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+||||+||||+|.+||++++..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 379999999999999999999998744433
No 237
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.2e-05 Score=81.79 Aligned_cols=182 Identities=16% Similarity=0.260 Sum_probs=89.2
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcE-EEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHH-hhcCCCCCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARL-YEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIR-RYGSTSPSIP 255 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~v-iE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~-~~~~l~~s~~ 255 (666)
-+.+|||||||||||.+||.+.+-|+.+- --+|.|. ++.+++.. ..+.++..+..+. .+...
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe--IL~KYVGe---------SE~NvR~LFaDAEeE~r~~----- 319 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE--ILNKYVGE---------SEENVRKLFADAEEEQRRL----- 319 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH--HHHHhhcc---------cHHHHHHHHHhHHHHHHhh-----
Confidence 36799999999999999999999996531 1234443 33333322 2233444443332 12211
Q ss_pred CCCCCceEEEEeCCCCCcchh----HHHHHH-HHHHHHHhc----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc
Q 005987 256 GESKSSAILLIDDLPVTNGRT----AFERLR-QCLLLLVRS----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA 326 (666)
Q Consensus 256 ~~~~~~~IIlIDEid~l~~~~----~~~~l~-~~L~~l~~~----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~ 326 (666)
|....-.|||+||+|.+..+. .-.+++ .+..+++.. .+.--|++++-++.. +-+.+.|-||
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~----------DlIDEALLRP 389 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRK----------DLIDEALLRP 389 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCch----------hhHHHHhcCC
Confidence 111124699999999542110 000111 112222221 111234555554432 2356666666
Q ss_pred CeeE--EEeCCCCHHHHHHHHHHHHHH--hCCCCC-HHHHHHHHHH----cCCcHHHHHHHHHHHhcC
Q 005987 327 GARK--VALNPITNGSIKRTLSKICRQ--EQYSLS-TEQIDLVAQA----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 327 r~~~--I~F~p~s~~~i~kiL~~I~~~--e~i~v~-~~~l~~Ia~~----s~GDIR~AIn~LQf~~~~ 385 (666)
+-.. +.+.-|+..-..++|+-...+ +.-.++ +-.++.||.. |+..|--.+...|-.|+.
T Consensus 390 GRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 390 GRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred CceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 5544 455566666555555433322 111222 2235555544 444555555555655554
No 238
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.82 E-value=0.00058 Score=74.23 Aligned_cols=206 Identities=14% Similarity=0.245 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHH--HHHHHHcCCcEEEEcCCCc------------------
Q 005987 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATV--RQIASHLGARLYEWDTPTP------------------ 214 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla--~~LAkelg~~viE~nasd~------------------ 214 (666)
.+++++|+.||... +. ..++++||.|+||+.++ ++|...-+ ++.++|-..
T Consensus 2 ~e~~~~L~~wL~e~-------~~-TFIvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 2 KEAIEQLKSWLNEN-------PN-TFIVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred chHHHHHHHHHhcC-------CC-eEEEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHhhhccChHHHHHHHHHhcC
Confidence 46788999999862 12 58999999999999999 55544322 344433210
Q ss_pred -----------hhhhhhhhcccCCccc---cchhHHHHHHHHHHH---------hhcCC---CCCCC-----CCCCCceE
Q 005987 215 -----------TIWQEYMHNCKTGLEY---TSKLDEFENFVERIR---------RYGST---SPSIP-----GESKSSAI 263 (666)
Q Consensus 215 -----------~~~~e~l~~~~~g~~~---~s~~~~f~~fl~~a~---------~~~~l---~~s~~-----~~~~~~~I 263 (666)
..+.+.......|... .+...+++++++... .+..- ..... .....+.|
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 0111111112223221 233445555554321 11000 00000 00112348
Q ss_pred EEEeCCCCCcchhHH--HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHH
Q 005987 264 LLIDDLPVTNGRTAF--ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSI 341 (666)
Q Consensus 264 IlIDEid~l~~~~~~--~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i 341 (666)
|+||.+..-.....+ ..+.+---.++...--.+||++++.... ..|...|-+.-+..|.+...+++.-
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~----------k~LskaLPn~vf~tI~L~Das~~~A 221 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYS----------KPLSKALPNRVFKTISLSDASPESA 221 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchh----------hhHHHhCCCCceeEEeecCCCHHHH
Confidence 999998654322111 2222111122333333566666554322 1233333333467899999999999
Q ss_pred HHHHHHHHHHhC-C-------------------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 342 KRTLSKICRQEQ-Y-------------------SLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 342 ~kiL~~I~~~e~-i-------------------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
++++...+..+. . ......++.++..-||=+. .||+++.
T Consensus 222 k~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRlt----DLe~lvr 280 (431)
T PF10443_consen 222 KQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLT----DLEFLVR 280 (431)
T ss_pred HHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHH----HHHHHHH
Confidence 988888776531 1 1345677888888888665 6777764
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2e-05 Score=71.27 Aligned_cols=31 Identities=32% Similarity=0.652 Sum_probs=28.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|+||||+||||+++.||+.+|+.++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 4789999999999999999999999988765
No 240
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.79 E-value=0.00041 Score=77.55 Aligned_cols=207 Identities=13% Similarity=0.217 Sum_probs=111.0
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhc
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~ 223 (666)
.+.++++....++.+...++.... .. ..++|+|++|+||+++|+.+.... +..++.+++.... .+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~---~~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~--~~~~~~ 208 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP---SD---ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP--ENLLES 208 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC---CC---CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC--hHHHHH
Confidence 455788888888888887775321 11 358899999999999999998765 3567788876421 011100
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCC--CCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~--~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------- 294 (666)
...|.... .+........| ....+..|+|||++.+... .+..|..+++....
T Consensus 209 ~lfg~~~~--------------~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-----~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 209 ELFGYEKG--------------AFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-----LQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HhcCCCCC--------------CcCCCccCCCCceeECCCCEEEEechhhCCHH-----HHHHHHHHHhhCeEEeCCCCc
Confidence 00010000 00000000000 0012347999999988643 22234444443210
Q ss_pred ----c-eEEEEecCCCCCCccch-hhhhhHHHHHHhhcCeeEEEeCCCCHH--HHHH----HHHHHHHHhC---CCCCHH
Q 005987 295 ----P-TAVVLTECGKADSVDST-AQSFEELQSILVDAGARKVALNPITNG--SIKR----TLSKICRQEQ---YSLSTE 359 (666)
Q Consensus 295 ----P-iViIit~~~~~~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s~~--~i~k----iL~~I~~~e~---i~v~~~ 359 (666)
. .||++++.... ... ...+. ..+..+.....|.++|+... ++.. +|.+.+...+ ..++++
T Consensus 270 ~~~~~~rii~~~~~~l~---~~~~~~~~~--~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLK---RMIAEGTFR--EDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD 344 (445)
T ss_pred eeeeceEEEEecCCCHH---HHHHcCCcc--HHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 1 23333321100 000 00110 11223334567888887553 3333 3344343333 458999
Q ss_pred HHHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 360 QIDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 360 ~l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+++.|.... .|++|..-|.++-++..
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 999998875 79999999999988763
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.79 E-value=0.00016 Score=68.19 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+++|+||||+|||+++..++..+ +..++.+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 37899999999999999999887 5666666544
No 242
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00091 Score=73.04 Aligned_cols=171 Identities=15% Similarity=0.230 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcCCC---CCCCccEEEEECCCCchHHHHHHHHHHHc-------CCcEEEEcCCCchh---hhhhhh
Q 005987 156 KKVEEVRAWFEERLGDSK---DKFSTNVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTPTPTI---WQEYMH 222 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~---g~~~~k~LLL~GPpG~GKTtla~~LAkel-------g~~viE~nasd~~~---~~e~l~ 222 (666)
...+.+..++...+.... ....+++++|.||+|+||||++..||..+ |..|.-+.+-..+. ++-..+
T Consensus 149 ~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~ 228 (388)
T PRK12723 149 KVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTY 228 (388)
T ss_pred HHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHH
Confidence 344455555555443211 11223689999999999999999999865 34454444433221 111111
Q ss_pred cccCCccc--cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCc--eEE
Q 005987 223 NCKTGLEY--TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP--TAV 298 (666)
Q Consensus 223 ~~~~g~~~--~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~P--iVi 298 (666)
....|+.+ ......+...+.+.. ..-+||||.+...... ...+.+ +..++.....| +++
T Consensus 229 a~~lgvpv~~~~~~~~l~~~L~~~~--------------~~DlVLIDTaGr~~~~--~~~l~e-l~~~l~~~~~~~e~~L 291 (388)
T PRK12723 229 GDIMGIPVKAIESFKDLKEEITQSK--------------DFDLVLVDTIGKSPKD--FMKLAE-MKELLNACGRDAEFHL 291 (388)
T ss_pred hhcCCcceEeeCcHHHHHHHHHHhC--------------CCCEEEEcCCCCCccC--HHHHHH-HHHHHHhcCCCCeEEE
Confidence 11123221 122233433333332 1348999999876432 112222 44444433323 445
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhh---cCeeEEEeCCCCHHHHHHHHHHHHHHhC
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVD---AGARKVALNPITNGSIKRTLSKICRQEQ 353 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r---~r~~~I~F~p~s~~~i~kiL~~I~~~e~ 353 (666)
+++.+... . .+..++.+ .+...+-|..++.+.---.+-.++...+
T Consensus 292 Vlsat~~~-------~---~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~ 339 (388)
T PRK12723 292 AVSSTTKT-------S---DVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMR 339 (388)
T ss_pred EEcCCCCH-------H---HHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHHHHHC
Confidence 55543211 1 12222222 2355677777777665555555555443
No 243
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.75 E-value=0.0025 Score=68.51 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=76.8
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCc-eEEEEecCCCCCCccchhhhhhH-HHHHHhhcCeeEEEeCCCCH
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEE-LQSILVDAGARKVALNPITN 338 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~P-iViIit~~~~~~s~d~~~r~l~~-L~s~L~r~r~~~I~F~p~s~ 338 (666)
+++++|++++.+.... .......+..++.....+ +++++.... .+.... +.. .+. +.. .+..+.|.+++.
T Consensus 77 ~klvii~~~~~l~~~~-~~~~l~~l~~~l~~~~~~~~~li~~~~~----~~~~~k-~~k~~k~-~~~-~~~~~~~~~~~~ 148 (340)
T PRK05574 77 RKLVELRLPEFLTGAK-GEKALKRLEAYLNPLPHPDLLLIVRLPK----LDKAKK-KSAWFKA-LKK-KAVVVEAQPPKE 148 (340)
T ss_pred CeEEEEECCCCCCchh-HHHHHHHHHHhccCCCCCcEEEEEECCc----CCHHHH-hhHHHHH-HHh-CceEEEcCCCCH
Confidence 5699999998775432 112222233333112222 333433211 111111 101 122 222 478999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 339 ~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
.++...+...+...|+.+++++++.|++.++||++.+.+-|+-++.
T Consensus 149 ~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l 194 (340)
T PRK05574 149 AELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLAL 194 (340)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998887765
No 244
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.75 E-value=0.0013 Score=74.21 Aligned_cols=209 Identities=15% Similarity=0.220 Sum_probs=112.4
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhc
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~ 223 (666)
.+.+++|......++...+..... .. ..++|+|++|||||++|+++.... +..++.+++..... +.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~---~~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~--~~~~~ 207 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR---SS---ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK--DLIES 207 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc---cC---CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH--HHHHH
Confidence 356789998888888887765332 11 469999999999999999998875 45678888765210 00000
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------c-
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------P- 295 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~-------P- 295 (666)
...|.... .|... .. .+.+. .. . ..+..|+|||++.+... .+..|..+++.+.. |
T Consensus 208 ~lfg~~~g----~~~~~-~~-~~~g~----~~-~-a~~Gtl~l~~i~~l~~~-----~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 208 ELFGHEKG----AFTGA-NT-IRQGR----FE-Q-ADGGTLFLDEIGDMPLD-----VQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HhcCCCCC----CCCCC-Cc-CCCCC----ee-E-CCCCEEEEeccccCCHH-----HHHHHHHHHhcCcEEeCCCCCeE
Confidence 00010000 00000 00 00000 00 0 11236899999988643 22234444444321 1
Q ss_pred ----eEEEEecCCCCCCccc-hhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHH----HHHHhC---CCCCHHHH
Q 005987 296 ----TAVVLTECGKADSVDS-TAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSK----ICRQEQ---YSLSTEQI 361 (666)
Q Consensus 296 ----iViIit~~~~~~s~d~-~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~----I~~~e~---i~v~~~~l 361 (666)
.||++++.... +. ....+ ...++.+..+..|.++|+.. +++..++.. .+...+ ..++++++
T Consensus 271 ~~~~rii~~~~~~l~---~~~~~~~~--~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 271 KVDVRIIAATHQNLE---QRVQEGKF--REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred EeeEEEEEeCCCCHH---HHHHcCCc--hHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 23333321100 00 00011 12233333456788888755 344433333 333333 24789999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 362 DLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 362 ~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
..|.... .|++|..-|.++-++..
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 9998774 59999999999888764
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=97.74 E-value=0.0016 Score=72.87 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=106.1
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcccC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~~~ 226 (666)
++++....+..+..-+..... .. ..++|+|++|+|||++|+.+.+.. +..++.+++..... +.+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~---~~---~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~--~~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ---SD---VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE--QLLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc---CC---CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH--HHHHHHhc
Confidence 466766666655554443221 11 369999999999999999998875 46788888764110 00000000
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCC---CCCC--CCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSP---SIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~---s~~~--~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------- 294 (666)
|.. .+...+ ...| .......|+|||++.+... .+..|..+++.+..
T Consensus 207 g~~-----------------~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-----~q~~L~~~l~~~~~~~~g~~~ 264 (444)
T PRK15115 207 GHA-----------------RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-----LQVKLLRVLQERKVRPLGSNR 264 (444)
T ss_pred CCC-----------------cCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-----HHHHHHHHHhhCCEEeCCCCc
Confidence 000 000000 0000 0012348999999988643 23334444444321
Q ss_pred ----ceEEEEecCCCCCCccch-hhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHHHH----HHhC---CCCCHHH
Q 005987 295 ----PTAVVLTECGKADSVDST-AQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKIC----RQEQ---YSLSTEQ 360 (666)
Q Consensus 295 ----PiViIit~~~~~~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~I~----~~e~---i~v~~~~ 360 (666)
.+-+|++. +.+ ..... ...+ ...++.+.....|.++|+.. +++..++...+ ...+ ..+++++
T Consensus 265 ~~~~~~rii~~~-~~~-l~~~~~~~~f--~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a 340 (444)
T PRK15115 265 DIDIDVRIISAT-HRD-LPKAMARGEF--REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDA 340 (444)
T ss_pred eeeeeEEEEEeC-CCC-HHHHHHcCCc--cHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 12233332 111 00000 0011 01122222355677777754 34444433333 3223 2489999
Q ss_pred HHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 361 IDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 361 l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
++.|.... .|++|...|.++-++..
T Consensus 341 ~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 341 MKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 99999997 89999999999987753
No 246
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.73 E-value=0.00023 Score=85.89 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=96.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHH----HHHHHHHHhhcCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEF----ENFVERIRRYGSTSPSI 254 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f----~~fl~~a~~~~~l~~s~ 254 (666)
+.+||-|.||+|||+++.+||++.|-+++.+|-++++...+.++....+-.- .+| ..|+...+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~----Gef~w~dapfL~amr--------- 1610 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEG----GEFRWMDAPFLHAMR--------- 1610 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccC----ceeEecccHHHHHhh---------
Confidence 5799999999999999999999999999999999988777766554332210 111 12343332
Q ss_pred CCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh----c-----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhh
Q 005987 255 PGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR----S-----THIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (666)
Q Consensus 255 ~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~----~-----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r 325 (666)
.+.-+|+||+. +..+..++++..||..--+ . .-.|-+.+.++.++..... -.+.+ .++.+.|
T Consensus 1611 -----~G~WVlLDEiN-LaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qgg-GRKgL--PkSF~nR 1681 (4600)
T COG5271 1611 -----DGGWVLLDEIN-LASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGG-GRKGL--PKSFLNR 1681 (4600)
T ss_pred -----cCCEEEeehhh-hhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCC-CcccC--CHHHhhh
Confidence 22368999996 4445556666655532111 0 0114444444443322111 11222 2677765
Q ss_pred cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 326 ~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
+.+|.+..++.++|..++.... -.+.++.+-.|+
T Consensus 1682 --FsvV~~d~lt~dDi~~Ia~~~y----p~v~~d~~~kii 1715 (4600)
T COG5271 1682 --FSVVKMDGLTTDDITHIANKMY----PQVNEDWRLKII 1715 (4600)
T ss_pred --hheEEecccccchHHHHHHhhC----CccChHHHHHHH
Confidence 7889999999998887666442 234444444443
No 247
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.71 E-value=0.0024 Score=70.90 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC----CCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 155 RKKVEEVRAWFEERLGDSKD----KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g----~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+..++.|.+.|...+..... ..++..++|+||+|+||||++..||..+ |+.+.-+.+..
T Consensus 68 ~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 68 EHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 34455555555544432110 0124789999999999999999999877 67776666543
No 248
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.69 E-value=8.2e-05 Score=67.72 Aligned_cols=53 Identities=32% Similarity=0.341 Sum_probs=41.4
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..|.||.-+++.|.+.|+.++.....+-| -+|-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 35789999999999888887764322222 245589999999999999999997
No 249
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.66 E-value=0.002 Score=66.59 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=102.9
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccc
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEY 230 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~ 230 (666)
|.||.-+.+.|...++........+-| =.|=|+|++||||...++.||+.+--.-. .|+ +-.++.+.. ...-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl---~S~---~V~~fvat~-hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGL---RSP---FVHHFVATL-HFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccc---cch---hHHHhhhhc-cCCC
Confidence 568888888888888876654332222 24557999999999999999998721100 000 000000000 0000
Q ss_pred cchhH----HHHHH-HHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC--------CCceE
Q 005987 231 TSKLD----EFENF-VERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--------HIPTA 297 (666)
Q Consensus 231 ~s~~~----~f~~f-l~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~--------~~PiV 297 (666)
.+.++ +++.. .+.++.. .+.|.|+||+|.+.. .+.++|..+++.. +.-|+
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C------------~rslFIFDE~DKmp~-----gLld~lkpfLdyyp~v~gv~frkaIF 218 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQAC------------QRSLFIFDEVDKLPP-----GLLDVLKPFLDYYPQVSGVDFRKAIF 218 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc------------CCceEEechhhhcCH-----hHHHHHhhhhccccccccccccceEE
Confidence 11112 22221 1222211 245999999998853 3555565555521 22466
Q ss_pred EEEecCCCCCCcc--------------chhhhhhH-HH-HHHh--------------hcCeeEEEeCCCCHHHHHHHHHH
Q 005987 298 VVLTECGKADSVD--------------STAQSFEE-LQ-SILV--------------DAGARKVALNPITNGSIKRTLSK 347 (666)
Q Consensus 298 iIit~~~~~~s~d--------------~~~r~l~~-L~-s~L~--------------r~r~~~I~F~p~s~~~i~kiL~~ 347 (666)
|.+++.+-....+ ...+.+++ |. +..+ +.--..|.|-|+....++..++-
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 6666654221110 00111110 00 0000 00123578999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 005987 348 ICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 348 I~~~e~i~v~~~~l~~Ia~~ 367 (666)
-+.++|...+.+.++.+++.
T Consensus 299 el~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 299 ELRKRGLAPDQDFVERVANS 318 (344)
T ss_pred HHHhcccccchHHHHHHHHh
Confidence 99899988888887777653
No 250
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.65 E-value=0.0048 Score=66.60 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=121.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC------CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG------ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg------~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
+++||||+-.-.....+..+.+.+. ++++.+...+ +. ....++++.+...+
T Consensus 21 ~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e----------------~~---~~~~~~~~~~~t~s---- 77 (343)
T PRK06585 21 RAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDD----------------LD---ADPARLEDEANAIS---- 77 (343)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHH----------------hh---cCHHHHHHHHhCCC----
Confidence 6999999999888888888877763 2222222110 00 01345666665443
Q ss_pred CCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhh-cCeeEE
Q 005987 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD-AGARKV 331 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r-~r~~~I 331 (666)
++++ +++|+|.+.+. ...+.|..++.....-.++|+.... .+...+ +...+.. ..+..|
T Consensus 78 -lF~~---~rlViv~~~~~--------~~~~~L~~~l~~~~~~~~lil~~~~----~~~~~k----l~k~~~~~~~~~~v 137 (343)
T PRK06585 78 -LFGG---RRLIWVRAGSK--------NLAAALKALLESPPGDAFIVIEAGD----LKKGSS----LRKLFETAAYAAAI 137 (343)
T ss_pred -CCCC---ceEEEEECCch--------hHHHHHHHHHcCCCCCcEEEEEcCC----CCcccH----HHHHHhcCCCeeEE
Confidence 2332 46888985432 1223455565553222333443211 111111 2222211 125678
Q ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCC
Q 005987 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGG 411 (666)
Q Consensus 332 ~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 411 (666)
.|.+++..++.+.+...+...|+.+++++++.|++.++||++.+.|-|+-++.-...... .+ .+.
T Consensus 138 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~--------------It-~ed 202 (343)
T PRK06585 138 PCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGE--------------IT-LDD 202 (343)
T ss_pred ecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--------------CC-HHH
Confidence 999999999999999999999999999999999999999999999999887764211000 00 011
Q ss_pred cccccCCccccchHHHHhHHhhCCC
Q 005987 412 FSIQFGRDETLSLFHALGKFLHNKR 436 (666)
Q Consensus 412 ~~~~~~RD~~l~lFhalGkil~~Kr 436 (666)
+..+.......++|+.+..++.++.
T Consensus 203 V~~lv~~~~e~~if~l~dai~~~~~ 227 (343)
T PRK06585 203 VRAVVGDASALSLDDAADAALAGDL 227 (343)
T ss_pred HHHHhCCcccccHHHHHHHHHCCCH
Confidence 2234455556788888887777653
No 251
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.64 E-value=0.0022 Score=71.82 Aligned_cols=209 Identities=14% Similarity=0.182 Sum_probs=109.4
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcc
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNC 224 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~ 224 (666)
+..+++......++...+..+.. . . ..++++|++|+||+++|+++.... +..++.+++..... +.+...
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~---~--~-~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~--~~~~~~ 213 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL---S--Q-ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE--SLLESE 213 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC---C--C-cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH--HHHHHH
Confidence 34578887777787777766432 1 1 469999999999999999997764 46778888764210 000000
Q ss_pred cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC----------
Q 005987 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI---------- 294 (666)
Q Consensus 225 ~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~---------- 294 (666)
..|......... ...+.+.+ . .....+|+|||++.+... .+..|..+++....
T Consensus 214 lfg~~~~~~~~~------~~~~~g~~----~--~a~~gtl~ld~i~~l~~~-----~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 214 LFGHEKGAFTGA------QTLRQGLF----E--RANEGTLLLDEIGEMPLV-----LQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred hcCCCCCCCCCC------CCCCCCce----E--ECCCCEEEEechhhCCHH-----HHHHHHHHHhcCcEEeCCCCceee
Confidence 000000000000 00000000 0 011348999999998643 23334444443221
Q ss_pred -c-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHH----HHHHHHHhC---CCCCHHHHHH
Q 005987 295 -P-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRT----LSKICRQEQ---YSLSTEQIDL 363 (666)
Q Consensus 295 -P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~ki----L~~I~~~e~---i~v~~~~l~~ 363 (666)
. .||.+++...... .....+. ..++.+.....|.++|+.. +++..+ |.+.+...+ ..+++++++.
T Consensus 277 ~~~rii~~t~~~l~~~--~~~g~~~--~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 277 VDIRIIAATNRDLQAM--VKEGTFR--EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eceEEEEeCCCCHHHH--HHcCCch--HHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 1 2333332110000 0000111 1222232356677777763 344433 333333222 4589999999
Q ss_pred HHHHc-CCcHHHHHHHHHHHhcC
Q 005987 364 VAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 364 Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
|.... .|++|..-|.|+-++..
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHh
Confidence 99874 79999999999987754
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.64 E-value=0.00041 Score=64.70 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 152 vg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
+|....++++++-++.... .. ..++|+|++|+||+++|+.|...-+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~---~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SS---SPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SS---S-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhC---CC---CcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 3556677788877776543 11 46999999999999999999887653
No 253
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.63 E-value=0.0015 Score=66.52 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=46.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK 259 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~ 259 (666)
.-.++||+|+|||.+++.||+.+|..++.+|+++.. . ...+.+++.-+...+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~-------------~----~~~l~ril~G~~~~G----------- 85 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM-------------D----YQSLSRILKGLAQSG----------- 85 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS------------------HHHHHHHHHHHHHHT-----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc-------------c----HHHHHHHHHHHhhcC-----------
Confidence 467899999999999999999999999999987622 1 224445554443332
Q ss_pred CceEEEEeCCCCCcc
Q 005987 260 SSAILLIDDLPVTNG 274 (666)
Q Consensus 260 ~~~IIlIDEid~l~~ 274 (666)
.-+++||++++..
T Consensus 86 --aW~cfdefnrl~~ 98 (231)
T PF12774_consen 86 --AWLCFDEFNRLSE 98 (231)
T ss_dssp ---EEEEETCCCSSH
T ss_pred --chhhhhhhhhhhH
Confidence 4789999999864
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.0023 Score=71.01 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd 213 (666)
++++|.||+|+||||++..||..+ +..|.-+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 689999999999999998887654 45666666543
No 255
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.62 E-value=0.0017 Score=67.56 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=39.0
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+|+.-+..++-|.+..+ .+. . +..++||.|.+|+||+|+++..|--.+++++++..+
T Consensus 9 ~lVlf~~ai~hi~ri~R-vL~----~-~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~ 65 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISR-VLS----Q-PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT 65 (268)
T ss_dssp -----HHHHHHHHHHHH-HHC----S-TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS
T ss_pred ceeeHHHHHHHHHHHHH-HHc----C-CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEee
Confidence 45667777777666544 332 1 225799999999999999999999899999987643
No 256
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.003 Score=68.46 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+.++|.||+|+||||++..||..+ |..+.-+.+-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 689999999999999999999877 5566655543
No 257
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.61 E-value=0.0006 Score=65.97 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=43.2
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
|+|....++++.+-++.... .+ .++||+|++||||+.+|+++-+.. +..++.+|++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----SD-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhC-----CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhh
Confidence 57788888999888887543 22 469999999999999999998865 46789999876
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.61 E-value=0.0015 Score=79.36 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=113.1
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccc
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEY 230 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~ 230 (666)
.+.-+-....+.+.++.+.. .+. ++||.||+.+|||+++..+|++.|-+++.+|+-..+..+++++...+.-.
T Consensus 867 yIiTPfVqkn~ln~~Ra~s~---~~f---P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~- 939 (4600)
T COG5271 867 YIITPFVQKNYLNTMRAASL---SNF---PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDD- 939 (4600)
T ss_pred eEecHHHHHHHHHHHHHHhh---cCC---cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCC-
Confidence 44444444444444443321 233 49999999999999999999999999999999887777777654322110
Q ss_pred cchhHHHH-HHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC-------------CCce
Q 005987 231 TSKLDEFE-NFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-------------HIPT 296 (666)
Q Consensus 231 ~s~~~~f~-~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~-------------~~Pi 296 (666)
.++ .|+ .++-.+-+ ++--|++||+.... ..+.++|..+++.. +.|-
T Consensus 940 -G~l-sFkEGvLVeAlR-------------~GyWIVLDELNLAp-----TDVLEaLNRLLDDNRelfIPETqevV~PHp~ 999 (4600)
T COG5271 940 -GSL-SFKEGVLVEALR-------------RGYWIVLDELNLAP-----TDVLEALNRLLDDNRELFIPETQEVVVPHPN 999 (4600)
T ss_pred -Cce-eeehhHHHHHHh-------------cCcEEEeeccccCc-----HHHHHHHHHhhccccceecCCcceeeccCCC
Confidence 000 111 12222222 22368999996432 22344455554432 2255
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHH
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQA 375 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s-~GDIR~A 375 (666)
+.+.++.+++.. +..|.. |...+++ |+..++|..++.+++..+|... +++.+.....|++.. +=.+|+.
T Consensus 1000 F~lFATQNppg~--YgGRK~--LSrAFRN-RFlE~hFddipedEle~ILh~r-----c~iapSyakKiVeVyr~Ls~rRs 1069 (4600)
T COG5271 1000 FRLFATQNPPGG--YGGRKG--LSRAFRN-RFLEMHFDDIPEDELEEILHGR-----CEIAPSYAKKIVEVYRGLSSRRS 1069 (4600)
T ss_pred eeEEeecCCCcc--ccchHH--HHHHHHh-hhHhhhcccCcHHHHHHHHhcc-----CccCHHHHHHHHHHHHHhhhhhh
Confidence 566655554332 222211 2222333 6888999999999999999855 457777777777653 2345665
Q ss_pred HH
Q 005987 376 IT 377 (666)
Q Consensus 376 In 377 (666)
++
T Consensus 1070 ~~ 1071 (4600)
T COG5271 1070 IN 1071 (4600)
T ss_pred HH
Confidence 55
No 259
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.60 E-value=0.0037 Score=66.93 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=102.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC------CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG------ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg------~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
+++||||+----+...+..+.+.+. +.+.+++..+ .+.+..++..+...+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~--------------------~~~~~~~~~~~~t~p---- 57 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDD--------------------ADQAIQALNEAMTPP---- 57 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCcc--------------------chHHHHHHHHhcCCC----
Confidence 4799999988777777777776652 1222222111 112345555553332
Q ss_pred CCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEE
Q 005987 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~ 332 (666)
+.+ .+++|+|++++...+.. ....+.|..+++......++|+..... .|...+. ...+.. .+..+.
T Consensus 58 -ff~---~~rlVvv~~~~~~~~~~--~~~~~~L~~~l~~~~~~~~li~~~~~~---~d~r~k~----~k~l~k-~~~~~~ 123 (326)
T PRK07452 58 -FGS---GGRLVWLKNSPLCQGCS--EELLAELERTLPLIPENTHLLLTNTKK---PDGRLKS----TKLLQK-LAEEKE 123 (326)
T ss_pred -CCC---CceEEEEeCchhhccCC--HHHHHHHHHHHcCCCCCcEEEEEeCCC---cchHHHH----HHHHHH-ceeEEE
Confidence 122 24688999876432111 223345666666533223333322111 1111111 122222 366778
Q ss_pred eCCC---CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 005987 333 LNPI---TNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 333 F~p~---s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~ 385 (666)
|.++ ...++.+.++..+.+.|+.+++++++.|++.++||++.+.|.|+-++.-
T Consensus 124 ~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 179 (326)
T PRK07452 124 FSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALY 179 (326)
T ss_pred ecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 8766 4567999999999999999999999999999999999999999988763
No 260
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.58 E-value=0.0011 Score=70.48 Aligned_cols=176 Identities=16% Similarity=0.259 Sum_probs=102.5
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh----hhc
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY----MHN 223 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~----l~~ 223 (666)
...+.+++..++.+...+-+. ....| -+++|+|-.|+|||.+++.+-++++.+-+-+|+-+.-.|... +..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~----~~~~P-S~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNN----SCTIP-SIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCC----Ccccc-eeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHH
Confidence 345678888898888776531 12344 578999999999999999999999888777776553333222 222
Q ss_pred c----cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEE
Q 005987 224 C----KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVV 299 (666)
Q Consensus 224 ~----~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViI 299 (666)
. ..|.......+.|.+|+....++..... ......|++|.+|.+...++ .+...|..+.+-.+.|.+.|
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~-----~d~~~~liLDnad~lrD~~a--~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATN-----RDQKVFLILDNADALRDMDA--ILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc-----cCceEEEEEcCHHhhhccch--HHHHHHHHHHHHhCCCceEE
Confidence 1 1122222223456666666655443221 12467899999987643221 12234444444444444333
Q ss_pred EecCCCCCCccchhhhhhHHHHHHh---hcCeeEEEeCCCCHHHHHHHHHH
Q 005987 300 LTECGKADSVDSTAQSFEELQSILV---DAGARKVALNPITNGSIKRTLSK 347 (666)
Q Consensus 300 it~~~~~~s~d~~~r~l~~L~s~L~---r~r~~~I~F~p~s~~~i~kiL~~ 347 (666)
+.....- ....+. ..-...+.|+.++.++++++|.+
T Consensus 153 ils~~~~------------e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 153 ILSAPSC------------EKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EEecccc------------HHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 3321110 011111 11245789999999999988775
No 261
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.58 E-value=0.0018 Score=67.81 Aligned_cols=181 Identities=13% Similarity=0.215 Sum_probs=92.6
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHH-HHHH--HcCCc--EEEEcCCCch---hhhhhh-
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVR-QIAS--HLGAR--LYEWDTPTPT---IWQEYM- 221 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~-~LAk--elg~~--viE~nasd~~---~~~e~l- 221 (666)
|.|+.+....+..|++.-... |. .+.+++.||.|+|||.++- .|+. +.|=. ++.+|.--.. ...+..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~--gE--snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILH--GE--SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHh--cC--CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 678889999999999865442 22 2589999999999999873 3333 45433 3444543211 111110
Q ss_pred ----hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceE
Q 005987 222 ----HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 222 ----~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiV 297 (666)
.....+....+..+.+..+++-.+.-.. ..+-++|.|+||+|...+-. .+-+.--|....++.+.|+.
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~-------~t~~~ViFIldEfDlf~~h~-rQtllYnlfDisqs~r~Pic 173 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDE-------TTSGKVIFILDEFDLFAPHS-RQTLLYNLFDISQSARAPIC 173 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCC-------CCCceEEEEeehhhccccch-hhHHHHHHHHHHhhcCCCeE
Confidence 0011122233444445555554433211 12235677788999654321 12221113334455667876
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC 349 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~ 349 (666)
++-.++- -+..+... ...++++++ -.+.-+++.+-.++.++++..+
T Consensus 174 iig~Ttr-ld~lE~LE---KRVKSRFsh--r~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 174 IIGVTTR-LDILELLE---KRVKSRFSH--RVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEeecc-ccHHHHHH---HHHHhhccc--ceeeccCCCChHHHHHHHHHHh
Confidence 5533322 11111111 133555444 1233445556788888887765
No 262
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.57 E-value=0.00037 Score=70.15 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||.|+||||+++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999983
No 263
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.56 E-value=0.0049 Score=69.24 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=112.8
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhccc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCK 225 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~~ 225 (666)
..+++......++...+..... .. ..++++|.+||||+++++++.+.. +..++.+|+..... +
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~---~~---~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~--~------ 199 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR---SD---ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK--D------ 199 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC---cC---CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH--H------
Confidence 4578887888888777765321 11 368999999999999999998764 45677777654210 0
Q ss_pred CCccccchhHHHHHHHHHHHhhcCCCCCCCC---------CCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC---
Q 005987 226 TGLEYTSKLDEFENFVERIRRYGSTSPSIPG---------ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH--- 293 (666)
Q Consensus 226 ~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~---------~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~--- 293 (666)
.+...+ ++.....+.+ ....+..|+|||++.+.... +..|..+++.+.
T Consensus 200 ----------~~~~~l-----fg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~-----q~~ll~~l~~~~~~~ 259 (463)
T TIGR01818 200 ----------LIESEL-----FGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDA-----QTRLLRVLADGEFYR 259 (463)
T ss_pred ----------HHHHHh-----cCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHH-----HHHHHHHHhcCcEEE
Confidence 011100 1100000000 00113479999999886532 223444444432
Q ss_pred --------Cc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCC--HHHHHHHHHHHHH----HhC---CC
Q 005987 294 --------IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKICR----QEQ---YS 355 (666)
Q Consensus 294 --------~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s--~~~i~kiL~~I~~----~e~---i~ 355 (666)
.. .||++++...... .....+. ..++.+..+..|.++|+. .+++..++...+. ..+ ..
T Consensus 260 ~~~~~~~~~~~rii~~~~~~l~~~--~~~~~f~--~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 260 VGGRTPIKVDVRIVAATHQNLEAL--VRQGKFR--EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred CCCCceeeeeeEEEEeCCCCHHHH--HHcCCcH--HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 11 2333332111000 0001111 133333345688999988 5666666555443 323 45
Q ss_pred CCHHHHHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 356 LSTEQIDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 356 v~~~~l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+++++++.|.... .|++|..-|.++.++..
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8999999999874 69999999999988764
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=9.3e-05 Score=83.08 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=46.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.-|+|+.|.++.++.|..+|..+..... ...++|+|.||||+||||+++.||+.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 34678899999999999999976655332 234699999999999999999999988
No 265
>PF14516 AAA_35: AAA-like domain
Probab=97.55 E-value=0.0053 Score=66.01 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=95.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCc-----hhhhh----hhhcccCCcccc-----------chhH
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP-----TIWQE----YMHNCKTGLEYT-----------SKLD 235 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~-----~~~~e----~l~~~~~g~~~~-----------s~~~ 235 (666)
..+.|.||..+|||+++..+.+.+ |+.++.++.... ..+.. .+......+... ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 589999999999999998887665 788777664431 11111 111111111100 1112
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc-hhHHHHHHHHHHHHHhcCC-Cc----e-EEEEecCCCCCC
Q 005987 236 EFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-RTAFERLRQCLLLLVRSTH-IP----T-AVVLTECGKADS 308 (666)
Q Consensus 236 ~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~-~~~~~~l~~~L~~l~~~~~-~P----i-ViIit~~~~~~s 308 (666)
.+..++++.- . ....++.||+|||+|.+.. ......+...|+.+..... .| + ++++..+.....
T Consensus 112 ~~~~~~~~~l-l--------~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 112 SCTEYFEEYL-L--------KQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hHHHHHHHHH-H--------hcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 3333443320 0 0113678999999998765 2223445555655554332 11 2 333333211110
Q ss_pred ccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q 005987 309 VDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIR 373 (666)
Q Consensus 309 ~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR 373 (666)
.+.. .+-+ + -+..|.+.+.+.+++...+++ .+..+++..++.|...++|-.-
T Consensus 183 ~~~~-------~SPF-N-Ig~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 183 LDIN-------QSPF-N-IGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred cCCC-------CCCc-c-cccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHH
Confidence 1100 1111 1 145688999999999887664 4566888889999999999753
No 266
>PTZ00202 tuzin; Provisional
Probab=97.55 E-value=0.00082 Score=73.22 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.|....+++|++..+.+|...|.... ...+ ++++|+||+||||||+++.++..++...+..|.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d----~~~p-rivvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLD----TAHP-RIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccC----CCCc-eEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 68888999999999999998887422 2233 699999999999999999999999855444443
No 267
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0015 Score=67.01 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCC
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd 213 (666)
.......+..+|.+ . ..++++||+|||||+++.++|.+. .+..+.+..|.
T Consensus 60 ~n~~Q~~~l~al~~------~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 60 RNEAQAHYLKAIES------K----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CCHHHHHHHHHHhc------C----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 33444555556653 1 489999999999999999999852 34545555443
No 268
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.54 E-value=0.0024 Score=67.32 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=95.4
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHH
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGS 340 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~ 340 (666)
++||+|++++.+..... .+.|..+++.....+++|+..... +...+....+... .+|..+.|.+++..+
T Consensus 47 ~kliii~~~~~~~~~~~----~~~L~~~l~~~~~~~~~i~~~~~~----~~~~~~~k~~~~~---~~~~~i~~~~~~~~~ 115 (302)
T TIGR01128 47 RRLVELRNPEGKPGAKG----LKALEEYLANPPPDTLLLIEAPKL----DKRKKLTKWLKAL---KNAQIVECKTPKEQE 115 (302)
T ss_pred CeEEEEECCCCCCCHHH----HHHHHHHHhcCCCCEEEEEecCCC----CHhHHHHHHHHHh---cCeeEEEecCCCHHH
Confidence 46999999998654322 234555555543333333332111 1111111112221 158999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCcc
Q 005987 341 IKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDE 420 (666)
Q Consensus 341 i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~ 420 (666)
+.+.+...+..+|+.+++++++.|+..++||++.+.|-|+-++.-.... . .+ .+.+..+...+.
T Consensus 116 ~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~-~--------------It-~e~I~~~~~~~~ 179 (302)
T TIGR01128 116 LPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDG-K--------------IT-LEDVEEAVSDSA 179 (302)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCC-C--------------CC-HHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998776532110 0 00 011223344455
Q ss_pred ccchHHHHhHHhhCC
Q 005987 421 TLSLFHALGKFLHNK 435 (666)
Q Consensus 421 ~l~lFhalGkil~~K 435 (666)
..++|..+..++.++
T Consensus 180 ~~~if~l~dal~~~~ 194 (302)
T TIGR01128 180 RFNVFDLTDALLEGK 194 (302)
T ss_pred cCCHHHHHHHHHCCC
Confidence 667888887777765
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=97.54 E-value=0.0044 Score=66.47 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
.+++|+||||+||||++..+|..+ |..+.-+++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 689999999999999999998876 566655544
No 270
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.51 E-value=0.0004 Score=68.94 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=25.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+..+|.||||||||++++.+++.+ |..|+-+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 589999999999999999987766 66666554
No 271
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.51 E-value=8.1e-05 Score=72.24 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=37.9
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc---EEEEcCCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPT 213 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~---viE~nasd 213 (666)
+++|+++.++++...+. ... +..+ +.++|+||+|+|||++++.++..+.-. ++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~---~~~~-~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ---SGSP-RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS---S------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCCHHHHHHHHHHHHH-HHH---cCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 36899999999999986 332 2222 689999999999999999888877322 66555443
No 272
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.50 E-value=0.0016 Score=64.63 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=25.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
++++|.||+|+||||++-.||..+ +.+|.-++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 789999999999999999998876 555554444
No 273
>PLN02840 tRNA dimethylallyltransferase
Probab=97.48 E-value=0.00098 Score=73.03 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=87.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
.+++|.||+|+||||++..||++++.+++..+.-. . ..+......-.. .++....
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q--v--------Yr~~~IgTaKpt----~eE~~~V----------- 76 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ--V--------YRGLDVGSAKPS----LSERKEV----------- 76 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc--e--------ecceeEEcCCCC----HHHHcCC-----------
Confidence 58999999999999999999999998877654321 1 111111000000 0011000
Q ss_pred CCceEEEEeCCCC--CcchhHH-HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCC
Q 005987 259 KSSAILLIDDLPV--TNGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (666)
Q Consensus 259 ~~~~IIlIDEid~--l~~~~~~-~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p 335 (666)
+ =-+||-++- -.....| +....++..+...++.|+| ++.++. + +++++.. +.+-|
T Consensus 77 --~-Hhlidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIv--VGGTGl------Y------l~aLl~G-----~~~~p 134 (421)
T PLN02840 77 --P-HHLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIV--AGGTGL------Y------LRWYIYG-----KPDVP 134 (421)
T ss_pred --C-eEeEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEE--EcCccH------H------HHHHhcC-----CCCCC
Confidence 1 234554442 2222223 3345667777788888765 455331 1 4454431 23344
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC-HHHHHHHH--------HHcCCcHHHHHHHHHHHhcCC
Q 005987 336 ITNGSIKRTLSKICRQEQYSLS-TEQIDLVA--------QASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 336 ~s~~~i~kiL~~I~~~e~i~v~-~~~l~~Ia--------~~s~GDIR~AIn~LQf~~~~~ 386 (666)
....++++.+...+...+..-. +.+.+.+. .....|.|+.+..|+.+-..+
T Consensus 135 ~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG 194 (421)
T PLN02840 135 KSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSG 194 (421)
T ss_pred CCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHC
Confidence 5556666666655554321111 12233322 235689999999999986544
No 274
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0075 Score=61.03 Aligned_cols=172 Identities=9% Similarity=0.083 Sum_probs=101.7
Q ss_pred CCCCccEEEEECCCC-chHHHHHHHHHHHcCCcEEEE-cCCCchhhhhhhhcccCCc--cccchhHHHHHHHHHHHhhcC
Q 005987 174 DKFSTNVLVITGQAG-VGKTATVRQIASHLGARLYEW-DTPTPTIWQEYMHNCKTGL--EYTSKLDEFENFVERIRRYGS 249 (666)
Q Consensus 174 g~~~~k~LLL~GPpG-~GKTtla~~LAkelg~~viE~-nasd~~~~~e~l~~~~~g~--~~~s~~~~f~~fl~~a~~~~~ 249 (666)
++.. +..||.|..+ .||..++..+++.+...-++. +.||..... ....+. .-.-..++++++.+.+...+
T Consensus 12 ~kLs-hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~----pe~~~~~~~~~I~IdqIReL~~~l~~~p- 85 (263)
T PRK06581 12 NKLY-NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIA----RETSATSNAKNISIEQIRKLQDFLSKTS- 85 (263)
T ss_pred Ccch-heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEe----ccccccccCCcccHHHHHHHHHHHhhCc-
Confidence 5665 7899999998 999999999998884432222 233321110 000000 01124566666665553322
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCee
Q 005987 250 TSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGAR 329 (666)
Q Consensus 250 l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~ 329 (666)
..+..+|++|++++.+... ..++|++.++..+..++++..... ..+.++.+++ ||.
T Consensus 86 -------~~g~~KViII~~ae~mt~~-----AANALLKtLEEPP~~t~fILit~~-------~~~LLpTIrS-----RCq 141 (263)
T PRK06581 86 -------AISGYKVAIIYSAELMNLN-----AANSCLKILEDAPKNSYIFLITSR-------AASIISTIRS-----RCF 141 (263)
T ss_pred -------ccCCcEEEEEechHHhCHH-----HHHHHHHhhcCCCCCeEEEEEeCC-------hhhCchhHhh-----ceE
Confidence 1124679999999988643 334677777776654555443321 2344555554 699
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 330 KVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 330 ~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
.+.|+.+............+.- -.+...++.|.+...-|....+.-
T Consensus 142 ~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~ 187 (263)
T PRK06581 142 KINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDF 187 (263)
T ss_pred EEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHH
Confidence 9999999997777665544322 234556777777766665554433
No 275
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.46 E-value=0.00015 Score=71.87 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=36.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.|+||+||+...+.+.-... |. +.+||.||||+|||++|+.+..-|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-------G~---h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-------GG---HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-------CC-----EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-------CC---CCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999998888876655 32 589999999999999999999876
No 276
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0011 Score=69.62 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=90.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
++++|.||+++|||.++-.||+.+|.+|+..+... . ..|....+.-.. .+.. ..
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ--v--------Yr~mdIGTAKps----~~e~---~~--------- 57 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ--V--------YRGLDIGTAKPS----LEEL---AG--------- 57 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh--h--------cCCCcccCCCCC----HHHH---cC---------
Confidence 68999999999999999999999999998766432 1 122221100000 0111 00
Q ss_pred CCceEEEEeCCCCC---cchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCC
Q 005987 259 KSSAILLIDDLPVT---NGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (666)
Q Consensus 259 ~~~~IIlIDEid~l---~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p 335 (666)
-+ =.+||.+|-. +...........+..+...++.|++ ++.+. .-+++++. -...-|
T Consensus 58 -vp-HhliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIl--VGGTg------------lY~~aL~~-----g~~~~p 116 (308)
T COG0324 58 -VP-HHLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPIL--VGGTG------------LYLKALLE-----GLSLLP 116 (308)
T ss_pred -CC-EEEecccCccccccHHHHHHHHHHHHHHHHhCCCCcEE--EccHH------------HHHHHHHc-----CCCCCC
Confidence 11 2467877632 2222223344556777777888775 34421 11455432 344455
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 005987 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQD 387 (666)
Q Consensus 336 ~s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~ 387 (666)
.....++..+...+...+. .+++.... ..-..|.|+.+..|+.+-..+.
T Consensus 117 ~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~---~i~pnD~~Ri~RALEv~~~tGk 173 (308)
T COG0324 117 EADPEVRRRLEAELAELGNDALHAELKKIDPEAAA---KIHPNDPQRIIRALEVYYLTGK 173 (308)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHH---hcCCCchhHHHHHHHHHHHHCC
Confidence 6566666666666555442 23333222 2346899999999998876543
No 277
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.44 E-value=0.0011 Score=69.38 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=84.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK 259 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~ 259 (666)
+++|.||+|+|||+++..||++++..++....-. .+ .+....+.-.. .++.. .
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q--vY--------~~l~IgTakp~----~~e~~-------------~ 53 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ--IY--------KGMDIGTAKPS----LQERE-------------G 53 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhh--ee--------eeccccCCCCC----HHHHc-------------C
Confidence 3789999999999999999999998887655321 11 11111000000 00000 0
Q ss_pred CceEEEEeCCC--CCcchhHH-HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCC
Q 005987 260 SSAILLIDDLP--VTNGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPI 336 (666)
Q Consensus 260 ~~~IIlIDEid--~l~~~~~~-~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~ 336 (666)
-+ --+||-++ .......| +...+++..+...++.|++ ++.++. -+++++.. +...|.
T Consensus 54 v~-hhlid~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~--vGGTg~------------Yi~all~g-----~~~~p~ 113 (287)
T TIGR00174 54 IP-HHLIDILDPSESYSAADFQTLALNAIADITARGKIPLL--VGGTGL------------YLKALLEG-----LSPTPS 113 (287)
T ss_pred cc-EEEEEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEE--EcCcHH------------HHHHHHcC-----CCCCCC
Confidence 11 13444333 22222222 3344667777777877654 555331 14454431 223344
Q ss_pred CHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 005987 337 TNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 337 s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~ 386 (666)
...++++.+.......+. .++++... ....+|.|+.+..|+.+...+
T Consensus 114 ~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~---~i~~nd~~Ri~RALEi~~~tG 168 (287)
T TIGR00174 114 ADKLIREQLEILAEEQGWDFLYNELKKVDPVAAA---KIHPNDTRRVQRALEVFYATG 168 (287)
T ss_pred CCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHH---hcCCccHHHHHHHHHHHHHHC
Confidence 466677777766555442 23443322 235699999999999876543
No 278
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.41 E-value=0.0039 Score=72.11 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc--EEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR--LYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~--viE~n 210 (666)
..+||.|+||+|||++++.+++.+... ++++.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~ 50 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELP 50 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecC
Confidence 479999999999999999999987643 55554
No 279
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.40 E-value=0.00095 Score=75.36 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..|+|+.|++..++.+.-.+. + ..+++|.||||+|||++++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~-------~---g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA-------G---GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc-------C---CCEEEEEecCCCCHHHHHHHHhccc
Confidence 488999999888766654432 1 1579999999999999999999865
No 280
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.39 E-value=0.001 Score=70.53 Aligned_cols=157 Identities=20% Similarity=0.291 Sum_probs=85.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
++++|+||+|+|||+++..||++++..++..++-. . ..++.....-.. .++..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q--v--------y~~l~i~Takp~----~~E~~------------- 57 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ--V--------YRGMDIGTAKPT----AEERA------------- 57 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc--e--------eecccccCCCCC----HHHHc-------------
Confidence 58999999999999999999999998776544321 1 111111000000 00000
Q ss_pred CCceEEEEeCCC--CCcchhHH-HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCC
Q 005987 259 KSSAILLIDDLP--VTNGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (666)
Q Consensus 259 ~~~~IIlIDEid--~l~~~~~~-~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p 335 (666)
.-.--+||.++ .......| +.....+..+...++.|+++ +.++ .+ +++++. +. ...|
T Consensus 58 -gv~hhlid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlv--GGt~------~Y------~~al~~--g~---~~~p 117 (307)
T PRK00091 58 -GVPHHLIDILDPTESYSVADFQRDALAAIADILARGKLPILV--GGTG------LY------IKALLE--GL---SPLP 117 (307)
T ss_pred -CccEEeecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEE--CcHH------HH------HHHhcc--CC---CCCC
Confidence 00123555443 21222222 33345566677777776654 4321 11 233332 11 2456
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 005987 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 336 ~s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~ 385 (666)
+....+++.|.......+. .+++..... ....|.|+.+..|+.+-..
T Consensus 118 ~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~---i~~~d~~Ri~RAlEi~~~t 172 (307)
T PRK00091 118 PADPELRAELEALAAEEGWEALHAELAEIDPEAAAR---IHPNDPQRIIRALEVYELT 172 (307)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhh---cCCCCCchhHHHHHHHHHH
Confidence 6677788888877665542 133333222 2568999999999987653
No 281
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.39 E-value=0.00032 Score=76.03 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+++++.|.||||||.++-.+|+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 589999999999999999999998
No 282
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.0021 Score=62.98 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.++|+|+||+||||.++-||++|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 379999999999999999999999
No 283
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.0014 Score=64.61 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
.+.|++||+|+||||++..++..+ |..++-++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999998888776 66666554
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0052 Score=69.07 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.1
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+++.|.||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 285
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.37 E-value=0.00019 Score=69.06 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=28.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+|||||||||+++.||+.+|+.++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 689999999999999999999999988774
No 286
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0033 Score=61.79 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccch
Q 005987 233 KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDST 312 (666)
Q Consensus 233 ~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~ 312 (666)
.+++++++++.+...+ ...++ +|++++.+... ..++|+..++.....++|+..... .
T Consensus 38 ~Vd~iReii~~~~~~~----------~~~k~-iI~~a~~l~~~-----A~NaLLK~LEEPp~~~~fiL~t~~-------~ 94 (206)
T PRK08485 38 KIEDAKEVIAEAYIAE----------SEEKI-IVIAAPSYGIE-----AQNALLKILEEPPKNICFIIVAKS-------K 94 (206)
T ss_pred CHHHHHHHHHHHhhCC----------CCcEE-EEEchHhhCHH-----HHHHHHHHhcCCCCCeEEEEEeCC-------h
Confidence 3567777777764321 11234 57889877532 334577777776655555554432 2
Q ss_pred hhhhhHHHHHHhhcCeeE-------------EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 313 AQSFEELQSILVDAGARK-------------VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 313 ~r~l~~L~s~L~r~r~~~-------------I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
.+.++.+++ ||.. +.|++++..++...|.. +.++++...+++++.|+..+.|.+|.++.
T Consensus 95 ~~llpTI~S-----Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~ 166 (206)
T PRK08485 95 NLLLPTIRS-----RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIP 166 (206)
T ss_pred HhCchHHHh-----hheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcC
Confidence 334445554 4765 77999999999999999 78888888889999999999999999864
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=0.00017 Score=69.66 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=28.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.+++.||||+||||+++.|++.+++.++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 5899999999999999999999999888765
No 288
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.33 E-value=0.0091 Score=66.53 Aligned_cols=204 Identities=14% Similarity=0.215 Sum_probs=116.9
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhh
Q 005987 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 142 KY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~ 218 (666)
-+++-++++|++....+.++..-.+.... .+ -.+||.|.+||||-.+|+++-+.- +..++.+||..-.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~-----td-stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP--- 308 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK-----TD-STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP--- 308 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC-----CC-CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC---
Confidence 56677899999999999999888876422 11 469999999999999999987754 6788999986411
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCC----------CceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK----------SSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~----------~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+. .++ ..-|+.-.+.++|..+ ..--||+||+-.+.-. ++.-|+..
T Consensus 309 e~-------------------LlE-SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~-----LQaKLLRV 363 (560)
T COG3829 309 ET-------------------LLE-SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP-----LQAKLLRV 363 (560)
T ss_pred HH-------------------HHH-HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH-----HHHHHHHH
Confidence 00 111 1112222222332211 1236899999877532 22223333
Q ss_pred HhcC---------CCc-eEEEEecCCCCCCccchhhhhh--HHH-HHHhhcCeeEEEeCCCC--HHHHHHHHHHHHH---
Q 005987 289 VRST---------HIP-TAVVLTECGKADSVDSTAQSFE--ELQ-SILVDAGARKVALNPIT--NGSIKRTLSKICR--- 350 (666)
Q Consensus 289 ~~~~---------~~P-iViIit~~~~~~s~d~~~r~l~--~L~-s~L~r~r~~~I~F~p~s--~~~i~kiL~~I~~--- 350 (666)
++.. ..| =|-|+++++.+- ...+. .+| .+.-|.....|.++|+- +++|.......+.
T Consensus 364 LQEkei~rvG~t~~~~vDVRIIAATN~nL-----~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s 438 (560)
T COG3829 364 LQEKEIERVGGTKPIPVDVRIIAATNRNL-----EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFS 438 (560)
T ss_pred HhhceEEecCCCCceeeEEEEEeccCcCH-----HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHH
Confidence 3332 112 134445444321 11110 011 22222234446666663 2344433333333
Q ss_pred -HhC--CC-CCHHHHHHHHHHc-CCcHHHHHHHHHHHhc
Q 005987 351 -QEQ--YS-LSTEQIDLVAQAS-GGDIRQAITSLQFSSL 384 (666)
Q Consensus 351 -~e~--i~-v~~~~l~~Ia~~s-~GDIR~AIn~LQf~~~ 384 (666)
..+ ++ ++++++..|.... .|++|..-|.++-+..
T Consensus 439 ~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 439 RRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 333 33 7899999888763 5999999999998774
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.32 E-value=0.00018 Score=66.92 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=25.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++++||||+||||+|+.+++.+++.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 47999999999999999999999955553
No 290
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.31 E-value=0.013 Score=63.61 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+||.|+.|+||||++|+||.-|.
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCC
Confidence 4699999999999999999999883
No 291
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.31 E-value=0.053 Score=59.61 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=74.4
Q ss_pred CceEEEEeCCCCCc---chhHHHHHHHHHHHHHh---cCCCc-eEEEEecCCCCC-CccchhhhhhHHHHHHhh------
Q 005987 260 SSAILLIDDLPVTN---GRTAFERLRQCLLLLVR---STHIP-TAVVLTECGKAD-SVDSTAQSFEELQSILVD------ 325 (666)
Q Consensus 260 ~~~IIlIDEid~l~---~~~~~~~l~~~L~~l~~---~~~~P-iViIit~~~~~~-s~d~~~r~l~~L~s~L~r------ 325 (666)
+..+|+|||+.++. ...+.++..+.|+.+++ .++.| +.|+++.+...- ....-...+++|+++|..
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 46799999998752 22223333344555543 34444 334444432110 000112345566666542
Q ss_pred ----cCeeEEEeCCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcCC----c--------HHHHHHHHHHHh
Q 005987 326 ----AGARKVALNPITNGSIKRTLSKICRQE------QYSLSTEQIDLVAQASGG----D--------IRQAITSLQFSS 383 (666)
Q Consensus 326 ----~r~~~I~F~p~s~~~i~kiL~~I~~~e------~i~v~~~~l~~Ia~~s~G----D--------IR~AIn~LQf~~ 383 (666)
++..+|++.|++++++..++.++..-. ...++++.|..+++.+.| + ||..|+.|..+.
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~ 398 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILE 398 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHH
Confidence 245679999999999999999887642 246889999888866433 2 455666665555
Q ss_pred cCC
Q 005987 384 LKQ 386 (666)
Q Consensus 384 ~~~ 386 (666)
..+
T Consensus 399 q~p 401 (416)
T PF10923_consen 399 QNP 401 (416)
T ss_pred HCC
Confidence 443
No 292
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00019 Score=67.59 Aligned_cols=29 Identities=45% Similarity=0.788 Sum_probs=26.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.+.+.|||||||||+++.||+.+|++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 47799999999999999999999998873
No 293
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00017 Score=68.73 Aligned_cols=30 Identities=37% Similarity=0.689 Sum_probs=27.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++++|.|||||||+++.|+ ++|+.+++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58899999999999999999 9999999876
No 294
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0044 Score=68.27 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=74.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK 259 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~ 259 (666)
+.+|+||.+|||||+++.+.+.+.-.++.++--|.... .....+.+..+. .+ +. .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~------------~~~l~d~~~~~~-~~--~~--------~-- 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLD------------RIELLDLLRAYI-EL--KE--------R-- 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcc------------hhhHHHHHHHHH-Hh--hc--------c--
Confidence 89999999999999999988887555666665442110 000111112111 11 11 0
Q ss_pred CceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHH
Q 005987 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG 339 (666)
Q Consensus 260 ~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~ 339 (666)
.+..|++||+++.. .....+..+.+.+.. -|+|++..... ....+.+.|.. |...+.+-|++-.
T Consensus 94 ~~~yifLDEIq~v~------~W~~~lk~l~d~~~~-~v~itgsss~l--------l~~~~~~~L~G-R~~~~~l~PlSF~ 157 (398)
T COG1373 94 EKSYIFLDEIQNVP------DWERALKYLYDRGNL-DVLITGSSSSL--------LSKEISESLAG-RGKDLELYPLSFR 157 (398)
T ss_pred CCceEEEecccCch------hHHHHHHHHHccccc-eEEEECCchhh--------hccchhhhcCC-CceeEEECCCCHH
Confidence 24589999999863 244456777777755 34554442211 11123344443 5888999999998
Q ss_pred HHHHH
Q 005987 340 SIKRT 344 (666)
Q Consensus 340 ~i~ki 344 (666)
+....
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 88764
No 295
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.29 E-value=0.001 Score=71.16 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
|.+.++.++|+|||+||||..+..|.+-++..|+..-++.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~ 297 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK 297 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC
Confidence 5566678999999999999999999999999999764443
No 296
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.27 E-value=0.011 Score=65.85 Aligned_cols=201 Identities=13% Similarity=0.185 Sum_probs=105.6
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcccC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~~~ 226 (666)
.+++....+..+..-+.... . ....++++|.+|+||+++++++.... +..++.+++.... .+
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----~--~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~--~~------- 204 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----P--SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN--ES------- 204 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----C--CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC--HH-------
Confidence 45666666666655444221 1 12468999999999999999997654 4568888876421 00
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCC---CCCC--CCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC-------
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSP---SIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~---s~~~--~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------- 294 (666)
.+...+-... .+.... ...| ....+.+|+|||++.+... .+..|..+++.+..
T Consensus 205 ---------~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-----~q~~l~~~l~~~~~~~~~~~~ 269 (441)
T PRK10365 205 ---------LLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-----MQVRLLRAIQEREVQRVGSNQ 269 (441)
T ss_pred ---------HHHHHhcCCC-CCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-----HHHHHHHHHccCcEEeCCCCc
Confidence 1111110000 000000 0000 0012347999999998653 22234444444321
Q ss_pred ----c-eEEEEecCCCCCCccc-hhhhhhHHHHHHhhcCeeEEEeCCCCHH--HHHHHHHHH----HHHhC---CCCCHH
Q 005987 295 ----P-TAVVLTECGKADSVDS-TAQSFEELQSILVDAGARKVALNPITNG--SIKRTLSKI----CRQEQ---YSLSTE 359 (666)
Q Consensus 295 ----P-iViIit~~~~~~s~d~-~~r~l~~L~s~L~r~r~~~I~F~p~s~~--~i~kiL~~I----~~~e~---i~v~~~ 359 (666)
. .+|++++... .+. ....+ .+.++.+.....|.++|+... ++..+.... +...+ ..++++
T Consensus 270 ~~~~~~rii~~t~~~~---~~~~~~~~~--~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (441)
T PRK10365 270 TISVDVRLIAATHRDL---AAEVNAGRF--RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ 344 (441)
T ss_pred eeeeceEEEEeCCCCH---HHHHHcCCc--hHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH
Confidence 1 2333332211 000 00011 122222323556777777542 444443333 33222 348999
Q ss_pred HHHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 360 QIDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 360 ~l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+++.|.... .|++|...|.++.++..
T Consensus 345 a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 345 AMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 999999887 89999999999987753
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0029 Score=68.72 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999864
No 298
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.27 E-value=0.0024 Score=67.25 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=83.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccc-hhHHHHHHHHHHHhhcCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTS-KLDEFENFVERIRRYGSTSPSIPGE 257 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s-~~~~f~~fl~~a~~~~~l~~s~~~~ 257 (666)
++++|.||+|+|||.++-.||+. +.+++..++- ..| .|..... +.. .++....
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~--QvY--------r~ldIgTaKpt-----~eE~~~i---------- 58 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI--QVY--------KEFDIASCKPS-----KELRKHI---------- 58 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH--HHH--------CCCceecCCCC-----HHHHcCC----------
Confidence 58999999999999999999999 4455533321 111 1111100 000 0000000
Q ss_pred CCCceEEEEeCCCCC--cchhHH-HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeC
Q 005987 258 SKSSAILLIDDLPVT--NGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALN 334 (666)
Q Consensus 258 ~~~~~IIlIDEid~l--~~~~~~-~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~ 334 (666)
+ =-+||-++-. .....| +...+++..+...++.|+| |+.++. + +++++. -+.+.
T Consensus 59 ---~-Hhlid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~Pil--vGGTgl------Y------i~all~-----gl~~~ 115 (300)
T PRK14729 59 ---K-HHLVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIF--VGGSAF------Y------FKHLKY-----GLPST 115 (300)
T ss_pred ---C-eeeeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEE--EeCchH------H------HHHHHc-----CCCCC
Confidence 1 1355655421 122223 2344566777777777754 555331 1 445442 12334
Q ss_pred CCCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 005987 335 PITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 335 p~s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~ 386 (666)
|+....++..+...+..+|. .+++.... ....+|.|+.+..|+.+...+
T Consensus 116 p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~---~i~pnd~~Ri~RALEv~~~tG 172 (300)
T PRK14729 116 PPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYE---SINKNDIYRIKRSLEVYYQTG 172 (300)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHh---hCCcCCHHHHHHHHHHHHHhC
Confidence 55566677767666555441 23333222 225699999999999986544
No 299
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.27 E-value=0.00099 Score=69.27 Aligned_cols=60 Identities=27% Similarity=0.457 Sum_probs=44.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCC
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd 213 (666)
+.+++++-..+..++.++.++.. . ...++|+||+|+||||+++++...+. ..++.+..+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~------~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~ 118 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK------P---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV 118 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc------C---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCc
Confidence 45778887777777777666653 1 14799999999999999999988773 3466665443
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.27 E-value=0.002 Score=70.19 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=30.1
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|-.+...++|+||||+||||++..+|..+ +..++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34445789999999999999999998765 4567666543
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.26 E-value=0.0022 Score=62.50 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=25.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
++||+||||+|||+++..++.+. |..++.+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37899999999999998877654 666766654
No 302
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00023 Score=66.12 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..+|++|-|||||||++..||..+|++.+++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 36999999999999999999999999988765
No 303
>PHA02624 large T antigen; Provisional
Probab=97.24 E-value=0.00056 Score=77.30 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
|.+..+.++|+||||+||||++.+|++.+|..++.+|.|.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 4444579999999999999999999999988888888775
No 304
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.23 E-value=0.00036 Score=80.74 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=45.3
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
-.|+.+++++||++.++.|..++.. + +.++|+|||||||||+++++|+.+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~------~----~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ------R----RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh------C----CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3478999999999999999888775 2 37999999999999999999998853
No 305
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.23 E-value=0.0044 Score=61.67 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.5
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||+|+||||+++.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5899999999999999999984
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.016 Score=62.79 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=29.1
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+++++|.||+||||||++..||..+ |..+.-+++-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 4789999999999999999999866 66666665543
No 307
>PRK03839 putative kinase; Provisional
Probab=97.20 E-value=0.00032 Score=68.37 Aligned_cols=31 Identities=35% Similarity=0.625 Sum_probs=27.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.|+||+||||+++.||+.+++.++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999998887543
No 308
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.20 E-value=0.0018 Score=72.34 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=31.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
|-++...++|+||||+||||++..+|..+ +..++.+..-+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 44455689999999999999999998866 66777776543
No 309
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.19 E-value=0.011 Score=67.34 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=22.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg 203 (666)
++||.|+||+|||++++.+++...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~ 261 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAP 261 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcC
Confidence 699999999999999999999764
No 310
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00081 Score=72.32 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=58.2
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGE 257 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~ 257 (666)
+..+||.||+|+|||.+++.||+-++..+.--.+..-+. +...|-.+ ..-+..++..+ .|..-
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ------AGYVGeDV---Esvi~KLl~~A-~~nVe------- 288 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ------AGYVGEDV---ESVIQKLLQEA-EYNVE------- 288 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh------cccccccH---HHHHHHHHHHc-cCCHH-------
Confidence 357999999999999999999999998877666554110 11112111 11223333332 12100
Q ss_pred CCCceEEEEeCCCCCcch--------h-HHHHHHHHHHHHHhcC
Q 005987 258 SKSSAILLIDDLPVTNGR--------T-AFERLRQCLLLLVRST 292 (666)
Q Consensus 258 ~~~~~IIlIDEid~l~~~--------~-~~~~l~~~L~~l~~~~ 292 (666)
.-..-|++|||+|.+... + .-+++++.|+.+++.+
T Consensus 289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred HHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhccc
Confidence 012349999999976411 0 1145777888888754
No 311
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [, ]. ; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_A.
Probab=97.17 E-value=0.00038 Score=66.21 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=38.5
Q ss_pred hhHhhhccccccCccccccchhHHHHHHHHHHHHHHHhhhCCCCCCCCcccccCCcchhhhhhhHHHHHHHHHhhhcccc
Q 005987 506 LSDADLLLASFRGRLVRYNEADNVLQSAAASVAARGVLFGNSHPVPPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWD 585 (666)
Q Consensus 506 LS~aD~l~~~~~~~~~~~~~~~~~l~~~a~sva~RGv~~~n~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (666)
+|++|++.+.+|+.++ | +++..+|..-||+...+...+. ....+.||+|+..+++..+++ .++.....+
T Consensus 1 IS~gDlv~~~Ir~~q~-W----sLlP~~a~~S~V~P~~~~~g~~---~~~~~~FP~wLGknS~~~K~~-Rll~el~~h-- 69 (155)
T PF08519_consen 1 ISDGDLVDRQIRSTQQ-W----SLLPTHAFFSCVLPASFMRGSM---SGERPNFPSWLGKNSKQNKNK-RLLQELQSH-- 69 (155)
T ss_dssp HHHHHHHHHHHTT-SS-G----GGHHHHHHHHTHHHHHTT-EE----SS------SHHHHHHHHHHHH-HHHHHHHTT--
T ss_pred CcHHHHHHHHhhcCCc-h----hhhHHHHHHHhhhhHHHhcCCC---CcccCCCcHHHHHHhHHHHHH-HHHHHHHHH--
Confidence 6899999999988644 5 3566666655566554433331 224677999999998766544 343332222
Q ss_pred CCcccccccCCCCCchhhhhhhhhhhhHHhh
Q 005987 586 GSISADVYNGSSSSDVSVLATEYAPALKWLG 616 (666)
Q Consensus 586 g~~~~~~~~~~~~~~~~~~~~e~lP~l~~i~ 616 (666)
++.....+..+++.+|+|+|+...
T Consensus 70 -------~~~~~s~~~~~v~~~Ylp~L~~~l 93 (155)
T PF08519_consen 70 -------MRLKTSASKSEVRLDYLPLLRQKL 93 (155)
T ss_dssp -------TTT---------------------
T ss_pred -------hcccccCCHHHHHHHHHHHHHHHH
Confidence 223334556789999999999754
No 312
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.0031 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.++|+||+||||||+.+.+|.-.
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 468999999999999999999976
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.16 E-value=0.0034 Score=65.97 Aligned_cols=57 Identities=28% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcCCC--C--CCCccEEEEECCCCchHHHHHHHHHHHc----C-CcEEEEcCCC
Q 005987 157 KVEEVRAWFEERLGDSK--D--KFSTNVLVITGQAGVGKTATVRQIASHL----G-ARLYEWDTPT 213 (666)
Q Consensus 157 ~i~el~~wL~~~~~~~~--g--~~~~k~LLL~GPpG~GKTtla~~LAkel----g-~~viE~nasd 213 (666)
..+.+..+|...+.... . ...+++++|.||+|+||||++..||..+ | ..|.-+..-.
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 34556666655543111 1 1123689999999999999999998876 4 5666666543
No 314
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.13 E-value=0.0033 Score=68.23 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.1
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+++.|+|+||+|+|||.++-.+...+-
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 448999999999999999999988874
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.12 E-value=0.00081 Score=70.01 Aligned_cols=64 Identities=25% Similarity=0.453 Sum_probs=47.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCC
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd 213 (666)
.+-++++|.......+++.++|..... + ...++++||+|+||||++.+++..+. ..++.+..+.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~---~---~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR---G---RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH---T---TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc---c---ceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 344788898888878888888886433 1 15899999999999999999999883 4555555443
No 316
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.013 Score=57.76 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=23.0
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+++++|+||+|+||||+++.|.++.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3789999999999999999999876
No 317
>PRK13947 shikimate kinase; Provisional
Probab=97.12 E-value=0.00044 Score=66.60 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.|+|||||||+++.||+.+|+.++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999887543
No 318
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.017 Score=63.34 Aligned_cols=56 Identities=25% Similarity=0.445 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCCC------CCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 156 KKVEEVRAWFEERLGDSK------DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~------g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
...+.+.++|...+.... +...+.+++|.||+|+||||++..||..+ |..+.-+..
T Consensus 195 ~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 195 NVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred HHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 344556666655442111 11233579999999999999999999754 445554443
No 319
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0016 Score=72.02 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=48.6
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC---cEEEEcCC
Q 005987 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA---RLYEWDTP 212 (666)
Q Consensus 142 KY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~---~viE~nas 212 (666)
.+.+-++++|...+.....+..+++. |..++|++||+|+||||+.+++.++++- .++.+.-|
T Consensus 231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~---------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 231 DQVILDLEKLGMSPFQLARLLRLLNR---------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred ccccCCHHHhCCCHHHHHHHHHHHhC---------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 33477889999999999998888874 2268999999999999999999999843 34444433
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.10 E-value=0.0011 Score=65.80 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999998884
No 321
>PRK06762 hypothetical protein; Provisional
Probab=97.10 E-value=0.00056 Score=65.64 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..++|+|+||+||||+++.|++.++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 68999999999999999999999965554444
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.10 E-value=0.01 Score=57.26 Aligned_cols=34 Identities=35% Similarity=0.533 Sum_probs=28.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+++++||||+||||++..+|..+ |..+.-+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 58899999999999999998876 67777766543
No 323
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.09 E-value=0.0015 Score=67.20 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
..++|.||+||||||+++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47999999999999999999998754
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.08 E-value=0.012 Score=68.65 Aligned_cols=203 Identities=18% Similarity=0.294 Sum_probs=116.8
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc--CCcEE--EEcCCC--chh
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL--GARLY--EWDTPT--PTI 216 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel--g~~vi--E~nasd--~~~ 216 (666)
.+|.-....+.+++.+..+.... ..+.+||+-|.|.||||++-.++... +..|. .+..+| +.-
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~~-----------~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRAN-----------DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred CCCCCcccccccHHHHHHHhcCC-----------CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHH
Confidence 35566777888888777764321 23799999999999999999988633 33332 223332 111
Q ss_pred hhhhhhccc----C--C---------ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHH
Q 005987 217 WQEYMHNCK----T--G---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (666)
Q Consensus 217 ~~e~l~~~~----~--g---------~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l 281 (666)
+..++.... . | ..+.+...-|..++.++..|. .|..++|||.+.+... .+
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~-----------~pl~LVlDDyHli~~~----~l 146 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYE-----------GPLYLVLDDYHLISDP----AL 146 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhc-----------CceEEEeccccccCcc----cH
Confidence 222221100 0 0 011223334566666666664 4679999999987654 24
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 282 ~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
..+|..+++...--+.++++....+.-.--..| ++..+--.+...+. .+.++....+... -+..++...+
T Consensus 147 ~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR----lr~~llEi~~~~Lr---f~~eE~~~fl~~~---~~l~Ld~~~~ 216 (894)
T COG2909 147 HEALRFLLKHAPENLTLVVTSRSRPQLGLARLR----LRDELLEIGSEELR---FDTEEAAAFLNDR---GSLPLDAADL 216 (894)
T ss_pred HHHHHHHHHhCCCCeEEEEEeccCCCCccccee----ehhhHHhcChHhhc---CChHHHHHHHHHc---CCCCCChHHH
Confidence 556777887776556677776544321100111 11111000122233 3566766666532 3478899999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcC
Q 005987 362 DLVAQASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf~~~~ 385 (666)
+.|.+.+.|=+- .||.+++.
T Consensus 217 ~~L~~~teGW~~----al~L~aLa 236 (894)
T COG2909 217 KALYDRTEGWAA----ALQLIALA 236 (894)
T ss_pred HHHHhhcccHHH----HHHHHHHH
Confidence 999999999654 45555543
No 325
>PRK00625 shikimate kinase; Provisional
Probab=97.07 E-value=0.00054 Score=66.59 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|+|+||+||||+++.||+.+++.++..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999888654
No 326
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.07 E-value=0.0057 Score=66.81 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-++++.||+|||||+++.+++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 46999999999999999988776
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0043 Score=62.91 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.+-|.||+||||||+.+++|--.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999865
No 328
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.05 E-value=0.03 Score=59.63 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=49.4
Q ss_pred CCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhh----------hHHHHHHhhcC
Q 005987 258 SKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF----------EELQSILVDAG 327 (666)
Q Consensus 258 ~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l----------~~L~s~L~r~r 327 (666)
.+.+.||+|||+|++..... ..+.+.+..++...++ +++++.|... ..+.+ ..-...|+..-
T Consensus 170 ~~~~iViiIDdLDR~~~~~i-~~~l~~ik~~~~~~~i-~~Il~~D~~~------l~~ai~~~~~~~~~~~~~~~yLeKii 241 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEI-VELLEAIKLLLDFPNI-IFILAFDPEI------LEKAIEKNYGEGFDEIDGREYLEKII 241 (325)
T ss_pred CCceEEEEEcchhcCCcHHH-HHHHHHHHHhcCCCCe-EEEEEecHHH------HHHHHHhhcCcccccccHHHHHHhhc
Confidence 35678999999999976543 3344555555554332 3344444211 00000 01133344422
Q ss_pred eeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 328 ARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 328 ~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
-..+.++++....+.+.+...+..
T Consensus 242 q~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 242 QVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHH
Confidence 345888999999999888887544
No 329
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.04 E-value=0.00052 Score=66.90 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+++|.||||+||||+++.||+.+|+..+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 378999999999999999999999766543
No 330
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.03 E-value=0.0045 Score=61.73 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|-++..+.+|+||||+|||+++..+|.+. |..++.+..-
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44446799999999999999999888654 6677777664
No 331
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.03 E-value=0.00082 Score=67.71 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.6
Q ss_pred cEEEEECCCCchHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIA 199 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA 199 (666)
..+||||+||+||||+|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 579999999999999999987
No 332
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.03 E-value=0.00054 Score=64.55 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=26.6
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
++|+||||+||||+++.||+.+|+.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 78999999999999999999999987743
No 333
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.03 E-value=0.0057 Score=61.11 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||.|+||||+++.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
No 334
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.03 E-value=0.00055 Score=64.48 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=25.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+++|+||||+||||+++.|++.++..++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 47899999999999999999999876653
No 335
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.02 E-value=0.0055 Score=61.93 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|-+...+.+|+||||+|||+++..+|.+. +..++.+..-
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33445689999999999999999998755 6777766654
No 336
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.02 E-value=0.0021 Score=72.46 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=46.5
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCC
Q 005987 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (666)
Q Consensus 143 Y~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd 213 (666)
..+.++++|-..++.++.++..+.. +...++++||+|+||||+++++.+++. ..++.+..|.
T Consensus 216 ~~~~~l~~Lg~~~~~~~~l~~~~~~---------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv 280 (486)
T TIGR02533 216 AVRLDLETLGMSPELLSRFERLIRR---------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV 280 (486)
T ss_pred cCCCCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe
Confidence 3566888888888888888776653 114799999999999999998888773 3466665443
No 337
>PRK05629 hypothetical protein; Validated
Probab=97.02 E-value=0.052 Score=58.04 Aligned_cols=93 Identities=6% Similarity=-0.011 Sum_probs=72.4
Q ss_pred CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCcccc
Q 005987 327 GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKA 406 (666)
Q Consensus 327 r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~ 406 (666)
.+..+.|.++.+.++.+.+...+...|+++++++++.|++.+++|+..+-+-|+-++...+...
T Consensus 117 ~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~I---------------- 180 (318)
T PRK05629 117 IAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNV---------------- 180 (318)
T ss_pred cceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCc----------------
Confidence 3778999999999999999999999999999999999999999999999999997775321110
Q ss_pred CCCCCcccccCCccccchHHHHhHHhhCCC
Q 005987 407 DGHGGFSIQFGRDETLSLFHALGKFLHNKR 436 (666)
Q Consensus 407 ~~~~~~~~~~~RD~~l~lFhalGkil~~Kr 436 (666)
+ ...+..+.......++|+.+..++.++.
T Consensus 181 t-~e~V~~~v~~~~~~~iF~l~dAv~~g~~ 209 (318)
T PRK05629 181 T-VEKVRAYYVGVAEVSGFDIADLACAGQV 209 (318)
T ss_pred C-HHHHHHHhCCCccchHHHHHHHHHcCCH
Confidence 0 0112234445566789988888887763
No 338
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.01 E-value=0.00094 Score=77.36 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=41.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
-+++++||++.++.++..+.. + ++++|+||||||||++++++|+.++.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~------~----~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQ------K----RNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHc------C----CCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 467899999999888887764 2 36889999999999999999999954
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.00 E-value=0.00067 Score=66.21 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=27.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
++++|.||||+||||+++.||+.+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 489999999999999999999999877664
No 340
>PRK14531 adenylate kinase; Provisional
Probab=97.00 E-value=0.00067 Score=66.46 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+.++|.||||+||||+++.||+.+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 468999999999999999999999987664
No 341
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.00 E-value=0.0014 Score=69.82 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++..+.+...++..+.....--+...++|+|++||||||+++.||+.+|+.++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 5556666666666544432211233689999999999999999999999999884
No 342
>PRK14532 adenylate kinase; Provisional
Probab=96.99 E-value=0.00067 Score=66.56 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|.||||+||||+++.||+.+|+..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 388999999999999999999999877643
No 343
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.00076 Score=65.40 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=27.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.||||+||||+++.|++.+++.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 4889999999999999999999988877643
No 344
>PRK13949 shikimate kinase; Provisional
Probab=96.97 E-value=0.0007 Score=65.53 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.||||+||||+++.||+.+++.++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998877543
No 345
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.97 E-value=0.00067 Score=63.24 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=27.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+++|+|||||||||+++.||+.+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3789999999999999999999998876543
No 346
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.97 E-value=0.00065 Score=65.97 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=25.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
++++|+||||+||||+++.|++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 68999999999999999999999865443
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.95 E-value=0.01 Score=60.48 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=25.9
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+...++|.|||||||||++..++..+ |..++.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 34689999999999999975554433 666666654
No 348
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.94 E-value=0.0015 Score=69.06 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcC
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDT 211 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~na 211 (666)
.|-++++|+-..-.-.+...+|..+.. + .+.+|++||+|+||||++++|+..+ +..++.+..
T Consensus 104 ~~~tl~~l~~~g~~~~~~~~~L~~~v~---~---~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 104 AVFTLDDYVEAGIMTAAQRDVLREAVL---A---RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred CCCCHHHHHhcCCCCHHHHHHHHHHHH---c---CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 345677775322221233344444432 1 1479999999999999999999987 345555543
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.94 E-value=0.009 Score=60.00 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-++..+++|+||||+|||+++..+|.+. |..++.+..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 44455789999999999999999998775 567777754
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.94 E-value=0.046 Score=58.40 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=28.1
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+.+++|.||+|+||||++..||..+ |..|.-+.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4689999999999999999999877 566665554
No 351
>PRK10436 hypothetical protein; Provisional
Probab=96.93 E-value=0.0034 Score=70.26 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=45.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCC
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd 213 (666)
+.++++|-..+..++.++..+.. +..++|++||+|+||||+++++.++++ ..++.+..|.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPv 256 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPV 256 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCc
Confidence 45788888888888888777654 125899999999999999998888873 4566665554
No 352
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.93 E-value=0.0071 Score=60.26 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++.||+|||||.+|-+.|.++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 589999999999999999998776
No 353
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.93 E-value=0.0046 Score=61.50 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
..++|+||.|+||||+++.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999993
No 354
>PRK06696 uridine kinase; Validated
Probab=96.93 E-value=0.002 Score=65.25 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+++.+++|.+++..... ++ +.++.|.|++|+||||+|+.|++.+ |..++.+.
T Consensus 3 ~~~~~~~la~~~~~~~~---~~--~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TR--PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CC--ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46677888888764211 22 2589999999999999999999999 66666544
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.92 E-value=0.002 Score=59.66 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
.+....+-..|...+. +..+++|.|+.|+||||+++.+++.+|.. -+++.|.
T Consensus 5 ~~~t~~l~~~l~~~l~------~~~~i~l~G~lGaGKTtl~~~l~~~lg~~-~~v~SPT 56 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLD------FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ-GNVTSPT 56 (133)
T ss_pred HHHHHHHHHHHHHhCC------CCCEEEEEcCCCCCHHHHHHHHHHHcCCC-CcccCCC
Confidence 3444555555554432 22589999999999999999999999864 2344443
No 356
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.92 E-value=0.012 Score=57.67 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEECCCCchHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIA 199 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LA 199 (666)
++|+||.|.||||+++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 357
>PRK14530 adenylate kinase; Provisional
Probab=96.91 E-value=0.00088 Score=67.37 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|.||||+||||+++.||+.+|+..+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4688999999999999999999999876643
No 358
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.90 E-value=0.0052 Score=61.07 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||.|+||||+.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 359
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.89 E-value=0.068 Score=56.93 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=39.6
Q ss_pred eeEEEeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcHHHHH
Q 005987 328 ARKVALNPITNGSIKRTLSKICRQEQY---SLSTEQIDLVAQASGGDIRQAI 376 (666)
Q Consensus 328 ~~~I~F~p~s~~~i~kiL~~I~~~e~i---~v~~~~l~~Ia~~s~GDIR~AI 376 (666)
+..|.+.+++.++++.++.......-+ ..++...+.+...++|+.|...
T Consensus 256 ~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 256 VKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 458999999999999999988776544 3466788888888999998754
No 360
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.89 E-value=0.0036 Score=67.64 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC----CcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg----~~viE~nas 212 (666)
..++|+||+|+||||+++++++.+. ..++.+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 5899999999999999999998774 345555443
No 361
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0015 Score=68.35 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=49.3
Q ss_pred cccCHHHHHHHHHHHHHhhcCC------CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDS------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~------~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
++||+++.+.|.-.|.+..... +...-++.+|+.||+|+|||..||.||+-.+..++-+.+.-
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 6899999998887776432210 12233478999999999999999999999999999888764
No 362
>PRK06217 hypothetical protein; Validated
Probab=96.88 E-value=0.001 Score=65.15 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=28.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.|+||+||||+++.|++.+|+.+++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998877654
No 363
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.87 E-value=0.00085 Score=64.17 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=24.1
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
++|.||+||||||+++.|++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986655
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.85 E-value=0.00096 Score=65.50 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=26.4
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
++|.||||+||||+++.||+.+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999999877653
No 365
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.014 Score=59.14 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.5
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||.|+||||+.+.++-
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.009 Score=56.75 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++++..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999998763
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.84 E-value=0.07 Score=55.74 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=27.6
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
++.++|+||+|+||||++..||..+ |.+|.-+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3689999999999999999998877 666655544
No 368
>PF13245 AAA_19: Part of AAA domain
Probab=96.83 E-value=0.0011 Score=55.35 Aligned_cols=24 Identities=42% Similarity=0.688 Sum_probs=17.8
Q ss_pred cEEEEECCCCchHHHHH-HHHHHHc
Q 005987 179 NVLVITGQAGVGKTATV-RQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla-~~LAkel 202 (666)
+.+++.||||+|||+++ +.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999554 5555544
No 369
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=65.33 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=26.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--CCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--GARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--g~~vi 207 (666)
+.++|+|+|||||||+++.|++.+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 589999999999999999999999 66654
No 370
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.82 E-value=0.0039 Score=56.33 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++++||+|+|||+++..++.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999999988888773
No 371
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.81 E-value=0.014 Score=58.82 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---C------CcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---G------ARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g------~~viE~nas 212 (666)
|-++..+..|+||||+|||+++..+|... + ..++.+...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 44455799999999999999999888763 3 566666554
No 372
>PRK06547 hypothetical protein; Provisional
Probab=96.81 E-value=0.0013 Score=63.98 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||+|+||||+++.||+.++..++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 5899999999999999999999998877754
No 373
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.81 E-value=0.055 Score=58.78 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
++++.|.||+|+||||++-.||..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999888887764
No 374
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.80 E-value=0.0022 Score=68.31 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=45.4
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+++.|-++.++++.++++++-.. .....++|+|.||+|+||||+++.|.+-+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g--~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQG--LEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhc--cCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 48999999999999999976653 334458999999999999999999999873
No 375
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.80 E-value=0.0082 Score=61.75 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=26.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
.++|+|+||+||||+++.||+.+ ++.++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 37899999999999999999987 56666554
No 376
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.80 E-value=0.0017 Score=65.75 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
+++.|+|||||||+++.+++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999985
No 377
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.012 Score=62.61 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|-++.++++|+||||+||||++..++.+. |..++.+.+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 44555799999999999999987766554 6666666543
No 378
>PRK14528 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=64.63 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.+++.||||+||||+++.||+.+|+.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999877643
No 379
>PRK01184 hypothetical protein; Provisional
Probab=96.76 E-value=0.0013 Score=64.18 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.+++|+||||+||||+++ +++++|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 478999999999999987 789999887654
No 380
>PRK02496 adk adenylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=64.43 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=26.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|.||||+||||+++.||+.+|+..+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 488999999999999999999999877643
No 381
>PRK14527 adenylate kinase; Provisional
Probab=96.76 E-value=0.0011 Score=65.34 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++++.||||+||||+++.||+.+++..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 689999999999999999999999876553
No 382
>PRK13946 shikimate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=64.21 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=28.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|.|++||||||+++.||+.+|+.++..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 6899999999999999999999999987743
No 383
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.73 E-value=0.013 Score=61.16 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+.++|+|.||+||||+++.|++.+ +.+++.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 379999999999999999999976 56666665
No 384
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.73 E-value=0.0013 Score=65.93 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=18.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 59999999999998887777766
No 385
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.72 E-value=0.005 Score=70.95 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=46.1
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCC
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd 213 (666)
.+.++++|-..+..++.+...+... ..++|++||+|+||||+++++.++++ ..++.+..|.
T Consensus 291 ~~~~l~~lg~~~~~~~~l~~~~~~~---------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpv 354 (564)
T TIGR02538 291 AQLDIDKLGFEPDQKALFLEAIHKP---------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPV 354 (564)
T ss_pred ccCCHHHcCCCHHHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCc
Confidence 3457888888888888887776541 14899999999999999999888874 3455555443
No 386
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.71 E-value=0.018 Score=58.68 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=30.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd 213 (666)
|-.+...++|.||||+|||+++..+|..+ |..++.++.-.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 44455689999999999999987776654 77877776443
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.71 E-value=0.0014 Score=66.59 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.++|.||||+||||+++.||+.+|+.++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3899999999999999999999998877654
No 388
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.70 E-value=0.01 Score=58.88 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEec
Q 005987 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTE 302 (666)
Q Consensus 260 ~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~ 302 (666)
.|.++|+||.-..-...-.+.+.+++..+.+.+. +.+|+|.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGm--TMivVTH 194 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM--TMIIVTH 194 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCC--eEEEEec
Confidence 4789999998654444455667777888877774 4455553
No 389
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.70 E-value=0.0017 Score=62.60 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|+|++||||||+++.||+.+|+.++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3588899999999999999999999987754
No 390
>PLN02200 adenylate kinase family protein
Probab=96.69 E-value=0.0017 Score=66.34 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=26.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+++|.||||+||||+++.||+.+|+..+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57999999999999999999999987654
No 391
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.69 E-value=0.0078 Score=58.34 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=28.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
.++++||||+|||+++..++.+++..++.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 689999999999999999999988777766553
No 392
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.69 E-value=0.021 Score=67.77 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=26.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---C-CcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---G-ARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g-~~viE~nasd 213 (666)
+.++|+|+|||||||+++++.+.+ + ..-+.+.+|.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApT 377 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPT 377 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCc
Confidence 589999999999999999987765 3 1234445554
No 393
>PRK13948 shikimate kinase; Provisional
Probab=96.68 E-value=0.002 Score=63.16 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+..++|.|++||||||+++.||+.+|+.++..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 368999999999999999999999999888543
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.68 E-value=0.022 Score=55.54 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++++..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 589999999999999999999875
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.67 E-value=0.17 Score=56.15 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=28.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd 213 (666)
+.+++++||+|+||||++..||..+ |..+.-+.+-.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 3689999999999999988888764 56676666543
No 396
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.67 E-value=0.017 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=27.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+.|++||+|+|||++|..+|...+.+++.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 368999999999999999999877777777544
No 397
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.67 E-value=0.015 Score=65.69 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 146 ~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.++.|++..++.+.-.+. + .++++|.||||+|||++++.++..+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~-------~---G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA-------G---GHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhheecc-------C---CcEEEEECCCCCcHHHHHHHHhccC
Confidence 478888888776655432111 1 2689999999999999999999876
No 398
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.015 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
++--|.||+||||||++|++-+-.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 678899999999999999997764
No 399
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.65 E-value=0.002 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+.|+||+||||+++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 400
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.65 E-value=0.036 Score=51.85 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=19.0
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
+++.|++|+||||+++.++..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788899999999999999864
No 401
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0016 Score=62.76 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|.|++|+||||+.+.||+.|++.++-.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 4699999999999999999999999987743
No 402
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.64 E-value=0.011 Score=68.35 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=20.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..+|+|+|||||||++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999988876654
No 403
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.64 E-value=0.0013 Score=59.57 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=21.0
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
++|+|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998
No 404
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.64 E-value=0.027 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..+.|.||+||||||+.++++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 58999999999999999998643
No 405
>PRK04182 cytidylate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=62.50 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=26.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+++|+|++||||||+++.||+.+|+.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999999987663
No 406
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0017 Score=71.28 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
...|.|+.||+...+.+.-... |. +.|||+||||||||.+|+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-------Gg---HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-------GG---HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-------cC---CcEEEecCCCCchHHhhhhhcccC
Confidence 4489999999999888766544 22 679999999999999999887765
No 407
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.62 E-value=0.075 Score=58.79 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=111.9
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCch-hh--hhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IW--QEY 220 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~-~~--~e~ 220 (666)
.+.+++|+...+.++.+-++-... .. -.+||.|.+||||--.|++|-+.- +-.++.+|+..-. .. .|.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~---Sd---~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESEL 294 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK---SD---STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESEL 294 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhc---CC---CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHH
Confidence 467899999999999988875432 11 369999999999999999987764 4567888886411 10 111
Q ss_pred hhcccCCccccchhHHHHH-HHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC------
Q 005987 221 MHNCKTGLEYTSKLDEFEN-FVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------ 293 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~-fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~------ 293 (666)
+.. ..| .|.. +-.+..+|.. . .+--||+|||-.+.-. ++.-|+..++.+.
T Consensus 295 FGH-eKG--------AFTGA~~~r~GrFEl----A-----dGGTLFLDEIGelPL~-----lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 295 FGH-EKG--------AFTGAINTRRGRFEL----A-----DGGTLFLDEIGELPLA-----LQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred hcc-ccc--------ccccchhccCcceee----c-----CCCeEechhhccCCHH-----HHHHHHHHHhhcceeecCC
Confidence 111 001 0000 0111111110 0 1236899999876532 2222333333321
Q ss_pred -Cce---EEEEecCCCCCCccchhhhhhHHHH-HHhhcCeeEEEeCCCCH-----HHHH-HHHHHHHHHhC---CCCCHH
Q 005987 294 -IPT---AVVLTECGKADSVDSTAQSFEELQS-ILVDAGARKVALNPITN-----GSIK-RTLSKICRQEQ---YSLSTE 359 (666)
Q Consensus 294 -~Pi---ViIit~~~~~~s~d~~~r~l~~L~s-~L~r~r~~~I~F~p~s~-----~~i~-kiL~~I~~~e~---i~v~~~ 359 (666)
.|+ |-|+++++.+-..--... ..++ +.-|....-|.++|+-. -.+. .++++++...| +.++++
T Consensus 352 ~r~ikVDVRiIAATNRDL~~~V~~G---~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNRDLEEMVRDG---EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccchhHHHHHHcC---cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 121 233344332100000000 0111 11121233355555532 2233 34555555544 468999
Q ss_pred HHHHHHHH-cCCcHHHHHHHHHHHhcCC
Q 005987 360 QIDLVAQA-SGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 360 ~l~~Ia~~-s~GDIR~AIn~LQf~~~~~ 386 (666)
+++.|... -.|++|...|.++-+++..
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 99999876 4699999999999988743
No 408
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.61 E-value=0.0023 Score=62.15 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=28.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+.++|.||+|+||||+++.||+.+++.++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 47999999999999999999999998877543
No 409
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.61 E-value=0.0019 Score=64.69 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=26.2
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
++|.||||+||||+++.||+.+|+.++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877753
No 410
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.60 E-value=0.036 Score=52.39 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=18.9
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
+++.|++|+||||++..+...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999864
No 411
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.00047 Score=76.17 Aligned_cols=46 Identities=35% Similarity=0.518 Sum_probs=40.0
Q ss_pred ccchhhhhhhhcccccccccccccCcccccCccccccccccccccCCCCccccccccc
Q 005987 4 SLSFEKFDEVLNGSKVSNVIWNQENDSALGSSSTQQLWTDKYKLCSLEEPDVQKKNVE 61 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (666)
+..|+.|++..+ |. .+.......++|++||+|+.+|||+||||||.
T Consensus 47 ~~d~~a~~d~~~---~~---------l~~~~~d~~elW~eKy~P~t~eeLAVHkkKI~ 92 (634)
T KOG1970|consen 47 EEDFEAFDDEES---VH---------LNNEKEDEFELWVEKYKPRTLEELAVHKKKIS 92 (634)
T ss_pred hhhhhhhchhhh---cc---------cCCCCccccchhHHhcCcccHHHHhhhHHhHH
Confidence 567888888877 66 67777888999999999999999999999986
No 412
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.59 E-value=0.002 Score=64.76 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.+++.||||+||||+++.||+.+|+..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 388999999999999999999999877753
No 413
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.59 E-value=0.067 Score=57.52 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC--CcEEEE
Q 005987 160 EVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG--ARLYEW 209 (666)
Q Consensus 160 el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg--~~viE~ 209 (666)
.+..+|..+.. ++ +.+|++||+|+||||++++|+..+. ..++.+
T Consensus 148 ~~~~~L~~~v~---~~---~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 148 KIKEFLEHAVI---SK---KNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHHHHHHHHHH---cC---CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 34555554443 21 5799999999999999999999884 344443
No 414
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.59 E-value=0.01 Score=66.53 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-++...++|+|+||+||||++..+|..+ +..++.+..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 44555789999999999999999887765 456666654
No 415
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.57 E-value=0.0065 Score=66.10 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|.||||+||||+++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 5799999999999999999999863
No 416
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.57 E-value=0.07 Score=50.07 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.0
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
+++.|+||+||||+++.+...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999754
No 417
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.021 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++++..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999875
No 418
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.56 E-value=0.017 Score=61.51 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-++.++..|+||||+||||++..++.+. |..++.+.+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 44455689999999999999998877544 667776665
No 419
>PLN02748 tRNA dimethylallyltransferase
Probab=96.54 E-value=0.035 Score=62.02 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
++++|.||+|+|||+++..||+.++++++...
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 58999999999999999999999998777443
No 420
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.53 E-value=0.0024 Score=61.21 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=26.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+++|+|++|+||||+++.||+.+|+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58999999999999999999999987653
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.1 Score=61.58 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+++++|.||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3689999999999999999999765
No 422
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.52 E-value=0.02 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++++..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999876
No 423
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.51 E-value=0.0024 Score=67.44 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-CCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-GARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-g~~vi 207 (666)
++++|.|||||||||+++.|++.+ ++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 589999999999999999999999 55444
No 424
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.50 E-value=0.0023 Score=62.86 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=25.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+++|.||+|+||||+++.|+..++..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47999999999999999999998876543
No 425
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.50 E-value=0.0087 Score=65.12 Aligned_cols=34 Identities=26% Similarity=0.580 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC-----CcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~nas 212 (666)
..+|++||+|+||||+++++++.+. ..++.+..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp 188 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDP 188 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 4789999999999999999998872 456666544
No 426
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=63.13 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=26.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+++++|+||+||||+++.||.++|+.++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 58999999999999999999999987553
No 427
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.49 E-value=0.032 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
++++|.||+|+||+|++..|+++.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999986
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.48 E-value=0.021 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.++|+||+|+||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5899999999999999999874
No 429
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.024 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.9
Q ss_pred CCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 185 GQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 185 GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
|.+||||||++.+||+++|+.+++-.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGD 27 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGD 27 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceeccc
Confidence 89999999999999999999988744
No 430
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.47 E-value=0.054 Score=55.32 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=24.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcC--CcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLG--ARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg--~~viE~nas 212 (666)
.+++.||+|+|||+++..|...+. +..+.+-++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 488999999999999998888773 344444333
No 431
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.47 E-value=0.0025 Score=61.02 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
++|+|+|||||||+++.|++. |+.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 88766
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=96.46 E-value=0.15 Score=56.59 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=28.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd 213 (666)
+.+++++||+|+||||++..||..+ |..+.-+.+-.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 3789999999999999888888755 66676666543
No 433
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.45 E-value=0.048 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+||+||...||||+++.+|-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 689999999999999999987653
No 434
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.26 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=29.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+++++|+||+|+||||++..||..+ |..|.-+.+-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 3689999999999999999999877 7777766653
No 435
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.45 E-value=0.013 Score=67.87 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=26.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---C---CcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---G---ARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g---~~viE~nasd 213 (666)
+..+|+|+|||||||+++.+...+ + ...+-+-+|.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APT 208 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPT 208 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 589999999999999998877655 1 1245556665
No 436
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.44 E-value=0.007 Score=65.65 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.-.+|.|||||||||+++.+++.+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3578889999999999999999873
No 437
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0026 Score=61.83 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=23.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
+.++|.||+|+||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998754
No 438
>PRK05973 replicative DNA helicase; Provisional
Probab=96.43 E-value=0.023 Score=57.96 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
|-++...+||.|+||+|||+++..+|.+. |..++.+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33445689999999999999988777654 66665554
No 439
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=96.42 E-value=0.015 Score=55.95 Aligned_cols=113 Identities=12% Similarity=0.218 Sum_probs=64.8
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHH
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG 339 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~ 339 (666)
+++|+|.+++-+... .-....+.|..++.....- ++++++. +. .+...+ +...+.. .+.++.|.++...
T Consensus 58 ~klvii~~~~~l~~~-~~~~~~~~l~~~l~~~~~~~~lii~~~-~~---~~~~~k----~~k~l~~-~~~~~~~~~~~~~ 127 (172)
T PF06144_consen 58 KKLVIIKNAPFLKDK-LKKKEIKALIEYLSNPPPDCILIIFSE-EK---LDKRKK----LYKALKK-QAIVIECKKPKEQ 127 (172)
T ss_dssp EEEEEEE-----TT--S-TTHHHHHHHHTTT--SSEEEEEEES--S-----HHHH----HHHHHTT-TEEEEEE----TT
T ss_pred CeEEEEecCcccccc-ccHHHHHHHHHHHhCCCCCEEEEEEeC-Cc---hhhhhh----HHHHHhc-ccceEEecCCCHH
Confidence 579999998432100 0011223355555543222 3333333 11 111122 2333333 5888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005987 340 SIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 340 ~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
++...++..+.+.|+.+++++++.|++..++|++.+.+.|+-++
T Consensus 128 ~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 128 ELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp THHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998765
No 440
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.41 E-value=0.1 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-+++.|++|+|||+++..++..
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 441
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.079 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
+.++|+||.|.|||++.+.++--
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHH
Confidence 58999999999999998887664
No 442
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.40 E-value=0.069 Score=49.82 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
+++.||+|+||||++..+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 443
>PRK08233 hypothetical protein; Provisional
Probab=96.40 E-value=0.0037 Score=60.56 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC-CcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG-ARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg-~~viE 208 (666)
.++.|.|+||+||||++..||..++ ..++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~ 34 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALY 34 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEE
Confidence 5789999999999999999999995 33443
No 444
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.12 Score=57.11 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.3
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..+.|.||+|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.036 Score=62.21 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
++++|.||+|+||||++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 689999999999999999999766
No 446
>PRK14526 adenylate kinase; Provisional
Probab=96.39 E-value=0.0029 Score=63.50 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
++|.||||+||||+++.||+.+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876653
No 447
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=96.39 E-value=0.36 Score=51.80 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccC
Q 005987 328 ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKAD 407 (666)
Q Consensus 328 ~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~ 407 (666)
...|.|.+++..++.+.+...+.+.|+.+++++++.|+..+++|+..+.+-|+-+++-.....
T Consensus 127 ~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It----------------- 189 (328)
T PRK08487 127 AVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPIT----------------- 189 (328)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCC-----------------
Confidence 457899999999999999999999999999999999999999999999999988876432110
Q ss_pred CCCCcccccCCccccchHHHHhHHhhCC
Q 005987 408 GHGGFSIQFGRDETLSLFHALGKFLHNK 435 (666)
Q Consensus 408 ~~~~~~~~~~RD~~l~lFhalGkil~~K 435 (666)
.+.+..+..+....++|+.+..++.++
T Consensus 190 -~edV~~~v~~~~e~~vF~l~dai~~g~ 216 (328)
T PRK08487 190 -LKDIQELVFGLGSVSFEDFFEKLLNKK 216 (328)
T ss_pred -HHHHHHHhcccccccHHHHHHHHHCCC
Confidence 011223344555677888777777665
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.38 E-value=0.053 Score=55.37 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-++...+||+||||+|||+++..++.+. |-.++.+..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 44455789999999999999987665542 555655543
No 449
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.36 E-value=0.062 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
++|.|++|+||||++..+....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7899999999999999997654
No 450
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.11 Score=54.08 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=26.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
..++|.||+|+||||++..++..+ +..+..+.+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 589999999999999999998886 344554444
No 451
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.36 E-value=0.029 Score=56.92 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---------CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~viE~nas 212 (666)
|-++..++.|+||||||||+++..+|... +..++.+..-
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 33445789999999999999999887553 2466666543
No 452
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.36 E-value=0.07 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.+++.|++|+||||++..+...
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4889999999999999988764
No 453
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.055 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.++|+||+|.||||+++.+..+.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh
Confidence 479999999999999999999987
No 454
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.35 E-value=0.023 Score=58.99 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=27.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
|-++....+++||||+|||+++..+|.+. |..++.+.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33455789999999999999998876643 55555544
No 455
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.34 E-value=0.083 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
+.++|.|+||+||||+++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999988854
No 456
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.34 E-value=0.014 Score=63.59 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
..+.|+||+|||||+++++|...+..
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 57999999999999999999988843
No 457
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.34 E-value=0.03 Score=58.12 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=28.9
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nas 212 (666)
.+...++|.||||+|||+++..+|..+ |..++.+..-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 344689999999999999998877664 6777776543
No 458
>PLN02674 adenylate kinase
Probab=96.33 E-value=0.0073 Score=61.88 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|.||||+||+|.++.||+.+|+..+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999976653
No 459
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.33 E-value=0.016 Score=73.14 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=40.7
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
|+.| +||.||.|||||+++.-+|+..|.+++++|.-....+++++.
T Consensus 439 ~~~p---illqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig 484 (1856)
T KOG1808|consen 439 GKFP---ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIG 484 (1856)
T ss_pred CCCC---eEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHH
Confidence 5544 999999999999999999999999999999888777777765
No 460
>PLN02199 shikimate kinase
Probab=96.33 E-value=0.0047 Score=64.53 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=28.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+.++|.|++|+||||+++.||+.+|+.++-.+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 57999999999999999999999999888543
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.33 E-value=0.047 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++++..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999876
No 462
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.32 E-value=0.0042 Score=58.78 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=26.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+++|+|+||+||||+++.|+..+ ++.++.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 37899999999999999999998 66666665
No 463
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.0053 Score=59.49 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=27.7
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+.+++|+|+||+||||+++.||..+ |..+..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3689999999999999999999988 445555543
No 464
>PRK07914 hypothetical protein; Reviewed
Probab=96.32 E-value=0.074 Score=56.90 Aligned_cols=146 Identities=11% Similarity=0.121 Sum_probs=93.9
Q ss_pred ceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCC-CHH
Q 005987 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPI-TNG 339 (666)
Q Consensus 261 ~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~-s~~ 339 (666)
+++|+|++...... ...+.|..+++......++|+...+.. ...+.+..|+ ..++..|.|.++ ...
T Consensus 65 rRlV~v~~~~~~~~-----~~~~~l~~~l~~~~~~t~lil~~~~~~----~~kk~~K~L~----k~g~~~v~~~~~~~~~ 131 (320)
T PRK07914 65 ERVVVLEAAAEAGK-----DAAALILSAAADLPPGTVLVVVHSGGG----RAKALANQLR----KLGAEVHPCARITKAA 131 (320)
T ss_pred ceEEEEeChHhccH-----HHHHHHHHHHhCCCCCeEEEEEecCCc----chhHHHHHHH----HCCCEEEecCCCCCHH
Confidence 46899998643321 123346666665433233333321111 1111122232 225668999999 999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCc
Q 005987 340 SIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRD 419 (666)
Q Consensus 340 ~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD 419 (666)
++.+.+...+...|+.+++++++.|++..+||+..+-+-|+-++...+.... .+.+..+..+.
T Consensus 132 ~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It-----------------~e~V~~~v~~~ 194 (320)
T PRK07914 132 ERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVD-----------------AAAVRRYHSGK 194 (320)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcC-----------------HHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999877652211110 01123344556
Q ss_pred cccchHHHHhHHhhCCC
Q 005987 420 ETLSLFHALGKFLHNKR 436 (666)
Q Consensus 420 ~~l~lFhalGkil~~Kr 436 (666)
...++|+.+..++.++.
T Consensus 195 ~~~~vf~L~dAi~~g~~ 211 (320)
T PRK07914 195 AEVKGFDIADKAVAGDV 211 (320)
T ss_pred eechHHHHHHHHHCCCH
Confidence 67788888888877653
No 465
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.30 E-value=0.041 Score=56.58 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++|+..+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999876
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.28 E-value=0.033 Score=56.64 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=29.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-++..+++++||||+|||+++..++.+. |..++.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 44456789999999999999999997653 566666554
No 467
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.28 E-value=0.13 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-+++.|+||+|||+++..++..
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 468
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.27 E-value=0.084 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
+++.|++|+||||++..++..-
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998753
No 469
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.27 E-value=0.12 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-+++.|++||||||++..++..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3788899999999999998753
No 470
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.034 Score=56.76 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.||+|+||||+++.++--+
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcC
Confidence 579999999999999999998766
No 471
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.004 Score=60.82 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=24.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.++|-||||+||||+|+.||+.+++.-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999765443
No 472
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.023 Score=67.42 Aligned_cols=166 Identities=16% Similarity=0.216 Sum_probs=96.1
Q ss_pred ccccccC-HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC----------CcEEEEcCCCchh
Q 005987 148 LEELAVQ-RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG----------ARLYEWDTPTPTI 216 (666)
Q Consensus 148 l~eLvg~-~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg----------~~viE~nasd~~~ 216 (666)
++-++|. +..++.+.+.|.... . +.-+|.|.||+|||+++.-+|+.+- ..++.++-
T Consensus 185 ldPvigr~deeirRvi~iL~Rrt-------k-~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~----- 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKT-------K-NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF----- 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccC-------C-CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh-----
Confidence 4556676 888888888876522 1 4678999999999999999999871 11111111
Q ss_pred hhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH---HHHHHHHHHHHHhcC
Q 005987 217 WQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---FERLRQCLLLLVRST 292 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~---~~~l~~~L~~l~~~~ 292 (666)
.....|..+. .....++..+.++.. .+.+.||+|||++-+.+... .....+.|...+..+
T Consensus 252 -----g~l~aGa~~rge~E~rlk~l~k~v~~-----------~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg 315 (898)
T KOG1051|consen 252 -----GSLVAGAKRRGEFEERLKELLKEVES-----------GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG 315 (898)
T ss_pred -----hhcccCcccchHHHHHHHHHHHHHhc-----------CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcC
Confidence 1112333332 122344555554432 13468999999997543211 112334455556666
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
. +.+|+.++ .+.+.+.++. .+.+++ +...+..+-|+......+|......
T Consensus 316 ~---l~~IGatT----~e~Y~k~iek-dPalEr-rw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 316 G---LWCIGATT----LETYRKCIEK-DPALER-RWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred C---eEEEeccc----HHHHHHHHhh-Ccchhh-CcceeEeccCcccchhhhhhhhhhh
Confidence 5 56666543 2245555554 334454 5777888888876656566555444
No 473
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.25 E-value=0.0035 Score=59.21 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.0
Q ss_pred EECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 183 ITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 183 L~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
|.||||+||||+++.||+.+|+..+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999999876653
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.25 E-value=0.015 Score=58.79 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nas 212 (666)
|-++...+|++||||+|||+++..++.+. |-.++.+...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 44455789999999999999988766433 7777776643
No 475
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.24 E-value=0.031 Score=56.86 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.++|.||+||||||+.+.+-+-+
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 479999999999999999987765
No 476
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.23 E-value=0.013 Score=63.56 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++++||+|+||||+++++++++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 477
>PLN02165 adenylate isopentenyltransferase
Probab=96.23 E-value=0.0048 Score=65.73 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=27.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
++++|.||+|+|||+++..||+.++++++.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 589999999999999999999999987664
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.22 E-value=0.0036 Score=61.45 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.||+|+||||++++++..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999887
No 479
>PTZ00293 thymidine kinase; Provisional
Probab=96.22 E-value=0.035 Score=55.49 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.8
Q ss_pred cEEEEECCCCchHHH-HHHHHHHHc--CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTA-TVRQIASHL--GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTt-la~~LAkel--g~~viE~na 211 (666)
++-+++||-|+|||| |++.+.+.. |..++-+..
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp 40 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKY 40 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEe
Confidence 578999999999999 888876644 566666644
No 480
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.21 E-value=0.005 Score=60.99 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
++++|.||+|+|||.++-.+|+++|..|+..+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 579999999999999999999999999998764
No 481
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.041 Score=54.68 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+..+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 5899999999999999999998764
No 482
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.19 E-value=0.12 Score=65.37 Aligned_cols=165 Identities=19% Similarity=0.286 Sum_probs=80.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-------CCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS 251 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-------g~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~ 251 (666)
+.++|.|.|||||||+++.+...+ ++.|+-+ +|...-. ..+.. .|+. .. -+..||.....+...
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-APTgkAa-~~L~e--~Gi~-A~---TIasfL~~~~~~~~~- 923 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GPTHRAV-GEMRS--AGVD-AQ---TLASFLHDTQLQQRS- 923 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-echHHHH-HHHHH--hCch-Hh---hHHHHhccccchhhc-
Confidence 689999999999999987775532 4555544 4432211 11211 2332 12 233444321100000
Q ss_pred CCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEE
Q 005987 252 PSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKV 331 (666)
Q Consensus 252 ~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I 331 (666)
.........||||||+-+++... +.. |..++.... -.|++++|.....+... .. +++.++.+.++..+
T Consensus 924 --~~~~~~~~~llIVDEASMV~~~~-m~~----ll~~~~~~g-arvVLVGD~~QL~sV~a-G~---~F~~lq~~~~~~ta 991 (1623)
T PRK14712 924 --GETPDFSNTLFLLDESSMVGNTD-MAR----AYALIAAGG-GRAVASGDTDQLQAIAP-GQ---PFRLQQTRSAADVV 991 (1623)
T ss_pred --ccCCCCCCcEEEEEccccccHHH-HHH----HHHhhhhCC-CEEEEEcchhhcCCCCC-CH---HHHHHHHcCCCCeE
Confidence 00000124699999999876432 222 333334322 25677888643332221 11 12222222123333
Q ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005987 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 332 ~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf 381 (666)
.+..+ .+ -.++....+.....|++..|+..|+-
T Consensus 992 ~L~eI--------~R---------Q~~elr~AV~~~~~g~~~~AL~~L~~ 1024 (1623)
T PRK14712 992 IMKEI--------VR---------QTPELREAVYSLINRDVERALSGLER 1024 (1623)
T ss_pred EeCee--------ec---------CCHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 32211 11 13445556666677888888888863
No 483
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.18 E-value=0.097 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=19.2
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
+++.|+||+||||+++.+...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999765
No 484
>PRK12338 hypothetical protein; Provisional
Probab=96.18 E-value=0.0047 Score=65.44 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=26.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+++++|+||+||||+++.||+.+|+..+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 58999999999999999999999997643
No 485
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.03 Score=58.23 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC----CcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg----~~viE~nas 212 (666)
..+|++||+|+||||++-++-..++ ..++.+..|
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP 163 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP 163 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc
Confidence 5899999999999999988887774 455555544
No 486
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.17 E-value=0.016 Score=58.62 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
-.+=|.|++|+||||+.+.||..+-
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccC
Confidence 3688999999999999999999873
No 487
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.029 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||+++++|..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999875
No 488
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.15 E-value=0.015 Score=62.88 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.-.+|+|||||||||+++.+|+.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999873
No 489
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.14 E-value=0.059 Score=52.10 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++|+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999999876
No 490
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.14 E-value=0.16 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
+++.|+||+||||++..+...-
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999987653
No 491
>PRK09354 recA recombinase A; Provisional
Probab=96.14 E-value=0.047 Score=58.74 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
|-++.++.+|+||||+||||++..++.+. |..++.+.+.
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 44555789999999999999998776543 6666666543
No 492
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0045 Score=60.06 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=23.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+|++|+||||+++.|++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999985
No 493
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.12 E-value=0.089 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|+||+||||+++.+++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38899999999999999998654
No 494
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.073 Score=51.30 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=28.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
..+.|+|.+|+||||+|.+|++.| |+.+.-+..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 589999999999999999999987 777776654
No 495
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.11 E-value=0.03 Score=66.63 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=27.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+..+|+|+|||||||+++++...+ |+.|+-+ +|.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~-ApT 405 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA-ALS 405 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE-eCc
Confidence 589999999999999999987654 7776654 443
No 496
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.10 E-value=0.1 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-+++.|+||+||||++..++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788899999999999988854
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.06 E-value=0.0065 Score=59.23 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
.+++|.||+|+||||+++.++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 579999999999999999999998864
No 498
>PRK05907 hypothetical protein; Provisional
Probab=96.05 E-value=0.88 Score=48.52 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=69.9
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCC
Q 005987 331 VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGH 409 (666)
Q Consensus 331 I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s-~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 409 (666)
+.|.++...++.+.+...+.++|..+++++++.++..+ +||+..+.+-|+-+++-..... +.+ .
T Consensus 129 ~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~--------------~It-~ 193 (311)
T PRK05907 129 GEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKE--------------SLE-A 193 (311)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCC--------------eEC-H
Confidence 48999999999999999999999999999999999999 6999999999998876321100 000 0
Q ss_pred CCcccccCCccccchHHHHhHHhhCCC
Q 005987 410 GGFSIQFGRDETLSLFHALGKFLHNKR 436 (666)
Q Consensus 410 ~~~~~~~~RD~~l~lFhalGkil~~Kr 436 (666)
+.+..+..+-..-++|+-+..|+.++.
T Consensus 194 e~V~~lv~~s~e~nIF~L~dai~~~~~ 220 (311)
T PRK05907 194 SDIQSFVVKKEAASLWKLRDALLRRDR 220 (311)
T ss_pred HHHHHHhcCcccccHHHHHHHHHccCH
Confidence 112344566667889998888887664
No 499
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.05 E-value=0.0081 Score=58.82 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=29.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
.++|.||+|+||||+++.|++.+ |+.++....+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 68899999999999999999998 77777665544
No 500
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.05 E-value=0.0045 Score=59.21 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..-+++|+.+|+. +..+|.||+|+||||++..|.......+-++.
T Consensus 23 ~~g~~~l~~~l~~-----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 23 GEGIEELKELLKG-----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTTHHHHHHHHTT-----------SEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CcCHHHHHHHhcC-----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 3456777777764 58999999999999999999887755444433
Done!