Query 005987
Match_columns 666
No_of_seqs 474 out of 1971
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 100.0 6.9E-41 2.3E-45 377.7 28.8 402 134-618 24-446 (516)
2 3u61_B DNA polymerase accessor 99.9 2.5E-24 8.6E-29 227.8 26.5 283 135-515 12-302 (324)
3 1sxj_E Activator 1 40 kDa subu 99.9 1.6E-22 5.4E-27 216.2 21.7 309 137-514 2-333 (354)
4 1sxj_C Activator 1 40 kDa subu 99.9 8.9E-22 3.1E-26 209.9 19.9 203 134-385 10-218 (340)
5 1iqp_A RFCS; clamp loader, ext 99.9 1.3E-20 4.5E-25 198.3 26.6 287 136-514 12-305 (327)
6 2chq_A Replication factor C sm 99.9 2.7E-21 9.3E-26 202.8 19.4 287 136-514 4-297 (319)
7 1sxj_D Activator 1 41 kDa subu 99.9 3.5E-21 1.2E-25 205.3 16.5 207 134-384 22-240 (353)
8 1sxj_B Activator 1 37 kDa subu 99.8 3.5E-20 1.2E-24 194.7 21.6 201 136-384 8-214 (323)
9 2chg_A Replication factor C sm 99.8 1.7E-19 5.9E-24 177.7 23.1 201 136-385 4-210 (226)
10 3pvs_A Replication-associated 99.8 6.4E-20 2.2E-24 202.5 19.9 199 136-385 13-221 (447)
11 1jr3_A DNA polymerase III subu 99.8 1.9E-19 6.4E-24 193.3 22.7 217 136-384 3-226 (373)
12 1njg_A DNA polymerase III subu 99.8 3.2E-19 1.1E-23 177.8 22.4 217 136-385 10-234 (250)
13 3pfi_A Holliday junction ATP-d 99.8 4E-19 1.4E-23 188.8 20.2 199 134-383 14-231 (338)
14 3uk6_A RUVB-like 2; hexameric 99.8 6.4E-18 2.2E-22 181.4 19.7 228 136-384 30-308 (368)
15 3vfd_A Spastin; ATPase, microt 99.8 3E-17 1E-21 178.2 21.7 213 136-383 102-329 (389)
16 3te6_A Regulatory protein SIR3 99.7 7.8E-17 2.7E-21 169.4 21.4 219 139-384 12-284 (318)
17 1hqc_A RUVB; extended AAA-ATPa 99.7 4.1E-17 1.4E-21 171.9 18.3 197 138-384 1-216 (324)
18 2c9o_A RUVB-like 1; hexameric 99.7 1.5E-16 5.3E-21 176.3 22.3 111 262-382 297-413 (456)
19 3b9p_A CG5977-PA, isoform A; A 99.7 3E-16 1E-20 163.5 22.3 208 138-379 10-232 (297)
20 3eie_A Vacuolar protein sortin 99.7 1E-16 3.5E-21 169.6 18.3 212 137-382 6-234 (322)
21 2qp9_X Vacuolar protein sortin 99.7 2E-16 7E-21 169.6 18.2 214 136-384 38-269 (355)
22 4b4t_J 26S protease regulatory 99.7 7.3E-16 2.5E-20 165.9 21.4 213 137-384 136-370 (405)
23 3bos_A Putative DNA replicatio 99.7 5.7E-16 2E-20 155.0 18.2 201 136-384 14-222 (242)
24 1fnn_A CDC6P, cell division co 99.7 1.5E-15 5.2E-20 163.4 22.2 219 136-384 7-252 (389)
25 3d8b_A Fidgetin-like protein 1 99.7 7.6E-16 2.6E-20 165.3 19.6 208 138-379 73-294 (357)
26 1in4_A RUVB, holliday junction 99.7 1.5E-15 5E-20 161.6 20.9 195 137-382 13-226 (334)
27 2qby_B CDC6 homolog 3, cell di 99.7 1.9E-16 6.6E-21 170.4 14.0 215 136-384 10-250 (384)
28 1xwi_A SKD1 protein; VPS4B, AA 99.7 4.2E-15 1.5E-19 157.2 23.2 205 140-379 3-226 (322)
29 4b4t_M 26S protease regulatory 99.7 1.1E-15 3.6E-20 166.9 18.4 214 136-384 168-403 (434)
30 4b4t_I 26S protease regulatory 99.7 1.9E-15 6.4E-20 163.2 19.6 215 136-384 169-404 (437)
31 4b4t_H 26S protease regulatory 99.7 2.4E-15 8.3E-20 163.8 20.6 212 138-384 198-431 (467)
32 3syl_A Protein CBBX; photosynt 99.7 2.6E-15 8.9E-20 157.0 19.5 215 137-384 11-260 (309)
33 4b4t_L 26S protease subunit RP 99.7 1.9E-15 6.5E-20 165.1 18.8 212 138-384 170-403 (437)
34 2v1u_A Cell division control p 99.6 2.5E-15 8.5E-20 161.3 17.6 221 136-384 9-254 (387)
35 2zan_A Vacuolar protein sortin 99.6 4.5E-15 1.5E-19 163.9 20.0 213 136-383 121-352 (444)
36 4b4t_K 26S protease regulatory 99.6 1.2E-14 4.2E-19 158.4 22.7 213 137-384 160-395 (428)
37 3h4m_A Proteasome-activating n 99.6 8.8E-15 3E-19 151.3 19.4 212 139-384 7-239 (285)
38 1a5t_A Delta prime, HOLB; zinc 99.6 1.2E-14 4.3E-19 154.4 20.1 192 153-382 6-208 (334)
39 2qz4_A Paraplegin; AAA+, SPG7, 99.6 4.7E-14 1.6E-18 143.6 22.6 202 145-381 2-227 (262)
40 1l8q_A Chromosomal replication 99.6 1.6E-14 5.5E-19 152.5 19.1 199 146-384 8-213 (324)
41 1lv7_A FTSH; alpha/beta domain 99.6 1.6E-14 5.3E-19 147.4 18.1 210 138-383 1-232 (257)
42 2qby_A CDC6 homolog 1, cell di 99.6 1.3E-14 4.6E-19 155.4 15.7 223 136-384 10-250 (386)
43 1d2n_A N-ethylmaleimide-sensit 99.6 2.6E-14 8.8E-19 147.1 16.4 196 150-384 34-247 (272)
44 2z4s_A Chromosomal replication 99.6 3E-14 1E-18 157.1 16.3 200 147-384 103-311 (440)
45 2gno_A DNA polymerase III, gam 99.6 4.5E-14 1.5E-18 148.1 16.8 168 153-381 1-175 (305)
46 1ofh_A ATP-dependent HSL prote 99.6 1.8E-13 6.2E-18 142.6 21.0 209 150-383 16-270 (310)
47 3cf0_A Transitional endoplasmi 99.5 2.9E-14 1E-18 149.3 12.6 211 140-384 6-237 (301)
48 3pxg_A Negative regulator of g 99.5 1.3E-14 4.5E-19 161.2 10.1 199 134-384 165-383 (468)
49 1qvr_A CLPB protein; coiled co 99.5 8.1E-14 2.8E-18 165.9 15.6 211 135-384 156-390 (854)
50 1jbk_A CLPB protein; beta barr 99.5 4.1E-14 1.4E-18 135.7 10.0 172 136-345 9-194 (195)
51 2ce7_A Cell division protein F 99.5 6E-13 2E-17 147.3 19.8 211 138-384 4-237 (476)
52 3hu3_A Transitional endoplasmi 99.5 2.3E-13 8E-18 151.5 13.3 204 141-379 196-414 (489)
53 3cf2_A TER ATPase, transitiona 99.5 3.2E-13 1.1E-17 157.4 14.3 200 145-379 200-418 (806)
54 1r6b_X CLPA protein; AAA+, N-t 99.4 5E-13 1.7E-17 157.2 13.9 212 133-383 170-406 (758)
55 2p65_A Hypothetical protein PF 99.4 2.2E-13 7.5E-18 130.3 8.1 132 135-296 8-155 (187)
56 3pxi_A Negative regulator of g 99.4 4.1E-13 1.4E-17 157.9 11.7 197 134-383 165-382 (758)
57 2r44_A Uncharacterized protein 99.4 1.3E-12 4.6E-17 138.1 14.5 207 137-383 15-274 (331)
58 2r62_A Cell division protease 99.4 4.8E-15 1.6E-19 152.0 -4.3 209 141-384 3-234 (268)
59 1w5s_A Origin recognition comp 99.4 7.4E-12 2.5E-16 135.7 20.0 217 138-383 14-270 (412)
60 4fcw_A Chaperone protein CLPB; 99.4 6.2E-12 2.1E-16 131.3 18.3 211 150-384 18-276 (311)
61 3t15_A Ribulose bisphosphate c 99.4 8E-12 2.7E-16 130.3 16.5 164 177-373 35-221 (293)
62 3cf2_A TER ATPase, transitiona 99.3 9.9E-13 3.4E-17 153.3 9.3 207 145-384 473-699 (806)
63 2bjv_A PSP operon transcriptio 99.3 1.3E-11 4.3E-16 126.3 16.2 206 147-384 4-238 (265)
64 1ixz_A ATP-dependent metallopr 99.3 1.2E-11 4E-16 125.8 15.2 208 140-383 7-236 (254)
65 2dhr_A FTSH; AAA+ protein, hex 99.3 1.2E-11 4.2E-16 137.6 15.7 211 137-384 20-252 (499)
66 1um8_A ATP-dependent CLP prote 99.3 9.9E-12 3.4E-16 133.9 14.3 217 150-384 22-337 (376)
67 3m6a_A ATP-dependent protease 99.3 1.2E-11 4E-16 139.9 14.0 215 140-384 72-313 (543)
68 1iy2_A ATP-dependent metallopr 99.3 5.3E-11 1.8E-15 122.8 17.5 208 140-383 31-260 (278)
69 1r6b_X CLPA protein; AAA+, N-t 99.3 8E-11 2.8E-15 138.4 18.9 211 150-384 459-713 (758)
70 1jr3_D DNA polymerase III, del 99.2 9.7E-11 3.3E-15 124.5 16.5 165 179-384 19-190 (343)
71 3hws_A ATP-dependent CLP prote 99.2 3.8E-11 1.3E-15 128.8 12.9 62 151-212 17-85 (363)
72 3pxi_A Negative regulator of g 99.2 9.6E-11 3.3E-15 137.7 17.3 199 149-382 491-720 (758)
73 2x8a_A Nuclear valosin-contain 99.2 1E-10 3.5E-15 120.6 15.0 207 144-384 5-234 (274)
74 1ojl_A Transcriptional regulat 99.2 1.4E-10 4.9E-15 121.4 16.2 204 149-384 2-233 (304)
75 1g8p_A Magnesium-chelatase 38 99.2 4.5E-10 1.5E-14 119.0 17.9 56 141-204 16-71 (350)
76 1ypw_A Transitional endoplasmi 99.2 1.4E-10 4.8E-15 136.8 13.6 201 141-376 196-411 (806)
77 1qvr_A CLPB protein; coiled co 99.1 2.1E-10 7.2E-15 136.5 13.8 213 149-384 558-817 (854)
78 2qen_A Walker-type ATPase; unk 99.1 6.8E-09 2.3E-13 109.4 21.1 202 144-374 7-241 (350)
79 1g41_A Heat shock protein HSLU 99.1 5.9E-09 2E-13 114.0 20.3 64 150-213 16-85 (444)
80 3ec2_A DNA replication protein 99.1 1.3E-09 4.5E-14 104.6 13.3 66 140-210 1-74 (180)
81 1ypw_A Transitional endoplasmi 99.0 1.4E-11 4.6E-16 145.5 -6.4 210 141-385 469-700 (806)
82 3n70_A Transport activator; si 98.9 2.3E-09 7.8E-14 99.5 9.7 57 150-213 2-61 (145)
83 3k1j_A LON protease, ATP-depen 98.9 4.9E-09 1.7E-13 120.0 13.7 56 138-203 30-85 (604)
84 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 1.5E-08 5.1E-13 112.9 15.8 193 150-382 23-262 (500)
85 3co5_A Putative two-component 98.9 6.5E-09 2.2E-13 96.2 9.5 57 150-213 5-61 (143)
86 2w58_A DNAI, primosome compone 98.8 1.7E-08 5.9E-13 98.4 12.3 70 139-212 15-91 (202)
87 1u0j_A DNA replication protein 98.8 3.2E-08 1.1E-12 100.8 13.7 42 160-204 88-130 (267)
88 2fna_A Conserved hypothetical 98.8 8.5E-08 2.9E-12 101.1 16.7 203 145-377 9-248 (357)
89 1tue_A Replication protein E1; 98.8 2.6E-08 9E-13 97.2 11.4 47 156-209 43-89 (212)
90 2qgz_A Helicase loader, putati 98.5 9E-08 3.1E-12 100.2 7.6 69 139-212 114-190 (308)
91 3upu_A ATP-dependent DNA helic 98.5 1.2E-07 4.1E-12 104.8 8.3 60 134-202 9-69 (459)
92 2kjq_A DNAA-related protein; s 98.5 6.3E-07 2.1E-11 83.5 11.7 85 179-303 37-124 (149)
93 3dzd_A Transcriptional regulat 98.4 2.4E-06 8.3E-11 91.6 14.8 202 149-385 129-360 (368)
94 4akg_A Glutathione S-transfera 98.4 1E-06 3.4E-11 114.3 12.9 186 137-351 1225-1433(2695)
95 1ny5_A Transcriptional regulat 98.3 3.9E-05 1.3E-09 82.7 20.0 207 148-385 136-369 (387)
96 3f9v_A Minichromosome maintena 98.2 7.4E-07 2.5E-11 101.6 4.6 27 180-206 329-355 (595)
97 1ye8_A Protein THEP1, hypothet 98.1 2E-05 6.9E-10 75.5 12.3 28 180-207 2-29 (178)
98 1z6t_A APAF-1, apoptotic prote 97.9 0.00013 4.3E-09 82.8 16.1 51 144-200 119-169 (591)
99 2vhj_A Ntpase P4, P4; non- hyd 97.8 4E-05 1.4E-09 79.9 9.1 31 177-207 122-152 (331)
100 2cvh_A DNA repair and recombin 97.8 0.00022 7.4E-09 69.6 13.5 37 177-213 19-55 (220)
101 3vkg_A Dynein heavy chain, cyt 97.8 6.8E-05 2.3E-09 98.2 11.9 186 137-351 1262-1471(3245)
102 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00039 1.4E-08 68.1 12.6 35 178-212 23-60 (235)
103 4akg_A Glutathione S-transfera 97.6 0.00045 1.6E-08 89.9 16.3 128 179-346 646-790 (2695)
104 2a5y_B CED-4; apoptosis; HET: 97.6 0.00078 2.7E-08 75.8 16.5 44 152-200 131-174 (549)
105 3foz_A TRNA delta(2)-isopenten 97.6 0.00016 5.4E-09 75.0 9.4 158 179-386 11-179 (316)
106 3crm_A TRNA delta(2)-isopenten 97.5 0.00014 4.9E-09 76.1 8.3 155 179-386 6-174 (323)
107 3sfz_A APAF-1, apoptotic pepti 97.5 0.0013 4.3E-08 80.7 17.2 52 144-201 119-170 (1249)
108 3exa_A TRNA delta(2)-isopenten 97.4 0.00026 8.9E-09 73.6 8.4 158 179-386 4-173 (322)
109 2orw_A Thymidine kinase; TMTK, 97.4 0.00016 5.4E-09 69.6 5.7 32 179-210 4-38 (184)
110 2b8t_A Thymidine kinase; deoxy 97.4 0.00052 1.8E-08 68.1 9.6 33 179-211 13-48 (223)
111 3trf_A Shikimate kinase, SK; a 97.4 0.00012 4.1E-09 69.7 4.7 31 179-209 6-36 (185)
112 1n0w_A DNA repair protein RAD5 97.4 0.00076 2.6E-08 66.7 10.7 37 177-213 23-68 (243)
113 3dm5_A SRP54, signal recogniti 97.3 0.014 4.7E-07 63.6 21.1 182 178-383 100-310 (443)
114 2i3b_A HCR-ntpase, human cance 97.3 0.0003 1E-08 68.0 7.2 23 180-202 3-25 (189)
115 3hr8_A Protein RECA; alpha and 97.3 0.0015 5.1E-08 69.3 13.2 39 175-213 58-99 (356)
116 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.1E-09 68.5 5.0 31 179-209 4-34 (178)
117 3kb2_A SPBC2 prophage-derived 97.3 0.00017 5.7E-09 67.5 4.6 31 179-209 2-32 (173)
118 2rhm_A Putative kinase; P-loop 97.2 0.0002 7E-09 68.3 4.8 30 179-208 6-35 (193)
119 3vaa_A Shikimate kinase, SK; s 97.2 0.00021 7.2E-09 69.2 4.8 31 179-209 26-56 (199)
120 1gvn_B Zeta; postsegregational 97.2 0.00046 1.6E-08 71.1 7.6 55 156-210 11-65 (287)
121 1zuh_A Shikimate kinase; alpha 97.2 0.00026 9E-09 66.3 4.6 31 179-209 8-38 (168)
122 1kag_A SKI, shikimate kinase I 97.2 0.00026 8.9E-09 66.5 4.4 30 179-208 5-34 (173)
123 1via_A Shikimate kinase; struc 97.1 0.00027 9.4E-09 66.7 4.2 29 180-208 6-34 (175)
124 2iyv_A Shikimate kinase, SK; t 97.1 0.00027 9.2E-09 67.2 4.2 31 179-209 3-33 (184)
125 3iij_A Coilin-interacting nucl 97.1 0.00029 1E-08 66.8 4.3 30 179-208 12-41 (180)
126 2fz4_A DNA repair protein RAD2 97.1 0.003 1E-07 63.0 11.9 33 180-212 110-142 (237)
127 3lw7_A Adenylate kinase relate 97.1 0.00034 1.2E-08 65.2 4.5 30 179-209 2-31 (179)
128 2dr3_A UPF0273 protein PH0284; 97.1 0.0041 1.4E-07 61.4 12.5 37 177-213 22-61 (247)
129 2ze6_A Isopentenyl transferase 97.1 0.00034 1.2E-08 70.7 4.4 32 179-210 2-33 (253)
130 1xp8_A RECA protein, recombina 97.1 0.004 1.4E-07 66.4 13.0 38 176-213 72-112 (366)
131 1e6c_A Shikimate kinase; phosp 97.1 0.00035 1.2E-08 65.5 4.1 30 179-208 3-32 (173)
132 2zr9_A Protein RECA, recombina 97.0 0.003 1E-07 66.9 11.7 37 176-212 59-98 (349)
133 3t61_A Gluconokinase; PSI-biol 97.0 0.00036 1.2E-08 67.5 4.3 30 179-208 19-48 (202)
134 1ly1_A Polynucleotide kinase; 97.0 0.00028 9.7E-09 66.4 3.5 29 179-207 3-32 (181)
135 1u94_A RECA protein, recombina 97.0 0.0033 1.1E-07 66.8 12.1 38 175-212 60-100 (356)
136 2cdn_A Adenylate kinase; phosp 97.0 0.00051 1.7E-08 66.4 5.2 31 179-209 21-51 (201)
137 3cm0_A Adenylate kinase; ATP-b 97.0 0.00036 1.2E-08 66.3 4.1 30 179-208 5-34 (186)
138 1tev_A UMP-CMP kinase; ploop, 97.0 0.00041 1.4E-08 66.1 4.4 30 179-208 4-33 (196)
139 2vli_A Antibiotic resistance p 97.0 0.00032 1.1E-08 66.4 3.5 29 179-207 6-34 (183)
140 2c95_A Adenylate kinase 1; tra 97.0 0.0004 1.4E-08 66.4 4.2 31 179-209 10-40 (196)
141 1y63_A LMAJ004144AAA protein; 97.0 0.00038 1.3E-08 66.5 4.0 30 179-208 11-41 (184)
142 1kht_A Adenylate kinase; phosp 97.0 0.00039 1.3E-08 66.1 4.0 25 179-203 4-28 (192)
143 3be4_A Adenylate kinase; malar 97.0 0.00044 1.5E-08 67.9 4.5 31 179-209 6-36 (217)
144 4eun_A Thermoresistant glucoki 97.0 0.00051 1.7E-08 66.5 4.8 30 179-208 30-59 (200)
145 3cmu_A Protein RECA, recombina 97.0 0.002 7E-08 81.4 11.2 38 176-213 1425-1465(2050)
146 2bwj_A Adenylate kinase 5; pho 97.0 0.00044 1.5E-08 66.3 4.2 31 179-209 13-43 (199)
147 2p5t_B PEZT; postsegregational 97.0 0.001 3.6E-08 67.0 7.1 32 179-210 33-64 (253)
148 1qf9_A UMP/CMP kinase, protein 97.0 0.00043 1.5E-08 65.8 4.0 31 179-209 7-37 (194)
149 3umf_A Adenylate kinase; rossm 97.0 0.00049 1.7E-08 68.0 4.3 29 179-207 30-58 (217)
150 1cr0_A DNA primase/helicase; R 96.9 0.0052 1.8E-07 63.1 12.3 34 178-211 35-72 (296)
151 1vt4_I APAF-1 related killer D 96.9 0.018 6.2E-07 68.6 18.1 43 152-201 131-173 (1221)
152 2r8r_A Sensor protein; KDPD, P 96.9 0.0018 6.3E-08 64.0 8.2 32 180-211 8-42 (228)
153 1knq_A Gluconate kinase; ALFA/ 96.9 0.00071 2.4E-08 63.7 5.0 30 179-208 9-38 (175)
154 3cmw_A Protein RECA, recombina 96.9 0.0016 5.3E-08 81.5 9.3 35 177-211 1081-1118(1706)
155 3io5_A Recombination and repai 96.9 0.01 3.4E-07 61.7 13.7 40 174-213 24-68 (333)
156 3kl4_A SRP54, signal recogniti 96.9 0.019 6.6E-07 62.4 16.7 35 178-212 97-134 (433)
157 3dl0_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 66.4 4.5 30 180-209 2-31 (216)
158 3fb4_A Adenylate kinase; psych 96.9 0.0006 2E-08 66.6 4.3 30 180-209 2-31 (216)
159 1ukz_A Uridylate kinase; trans 96.9 0.00067 2.3E-08 65.5 4.6 31 179-209 16-46 (203)
160 2pez_A Bifunctional 3'-phospho 96.9 0.00079 2.7E-08 63.7 4.9 33 178-210 5-40 (179)
161 2pt5_A Shikimate kinase, SK; a 96.9 0.00073 2.5E-08 63.0 4.5 30 180-209 2-31 (168)
162 1pzn_A RAD51, DNA repair and r 96.9 0.0051 1.7E-07 65.1 11.5 38 176-213 129-175 (349)
163 1v5w_A DMC1, meiotic recombina 96.9 0.0055 1.9E-07 64.7 11.7 38 176-213 120-166 (343)
164 1zd8_A GTP:AMP phosphotransfer 96.8 0.00063 2.2E-08 67.2 4.2 31 179-209 8-38 (227)
165 2ehv_A Hypothetical protein PH 96.8 0.0046 1.6E-07 61.2 10.5 34 178-211 30-67 (251)
166 1aky_A Adenylate kinase; ATP:A 96.8 0.00078 2.7E-08 66.1 4.7 31 179-209 5-35 (220)
167 2r6a_A DNAB helicase, replicat 96.8 0.0053 1.8E-07 67.3 11.8 37 175-211 200-240 (454)
168 2z43_A DNA repair and recombin 96.8 0.0034 1.2E-07 65.6 9.6 38 176-213 105-151 (324)
169 3zvl_A Bifunctional polynucleo 96.8 0.0072 2.5E-07 65.5 12.4 29 179-207 259-287 (416)
170 3jvv_A Twitching mobility prot 96.8 0.007 2.4E-07 64.2 11.7 33 179-211 124-160 (356)
171 3tlx_A Adenylate kinase 2; str 96.8 0.0016 5.5E-08 65.2 6.4 31 179-209 30-60 (243)
172 1vma_A Cell division protein F 96.7 0.055 1.9E-06 56.0 18.2 34 178-211 104-140 (306)
173 1xx6_A Thymidine kinase; NESG, 96.7 0.0032 1.1E-07 60.8 8.1 32 179-210 9-43 (191)
174 2q6t_A DNAB replication FORK h 96.7 0.0098 3.3E-07 65.0 13.0 39 174-212 196-238 (444)
175 3sr0_A Adenylate kinase; phosp 96.7 0.001 3.4E-08 65.2 4.5 29 180-208 2-30 (206)
176 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.6E-08 65.1 4.7 30 179-208 6-35 (227)
177 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.6E-08 65.9 4.7 31 179-209 17-47 (233)
178 1zp6_A Hypothetical protein AT 96.7 0.00078 2.7E-08 64.2 3.5 33 179-211 10-42 (191)
179 2z0h_A DTMP kinase, thymidylat 96.7 0.0013 4.6E-08 62.8 5.1 34 180-213 2-38 (197)
180 2px0_A Flagellar biosynthesis 96.7 0.024 8.2E-07 58.5 14.9 34 178-211 105-142 (296)
181 1nks_A Adenylate kinase; therm 96.7 0.00066 2.3E-08 64.5 2.7 25 179-203 2-26 (194)
182 1zak_A Adenylate kinase; ATP:A 96.7 0.00079 2.7E-08 66.2 3.2 29 179-207 6-34 (222)
183 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 63.5 4.5 34 179-212 5-39 (204)
184 2pbr_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 62.3 4.9 33 180-212 2-37 (195)
185 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.7E-08 63.1 4.0 26 178-203 5-30 (180)
186 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4E-08 63.4 4.3 28 180-207 2-29 (205)
187 1e4v_A Adenylate kinase; trans 96.6 0.0011 3.9E-08 64.7 4.2 30 180-209 2-31 (214)
188 2plr_A DTMP kinase, probable t 96.6 0.0016 5.6E-08 62.8 5.1 33 179-211 5-39 (213)
189 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00045 1.5E-08 73.0 1.0 54 154-211 4-57 (359)
190 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.7E-08 64.7 4.5 30 180-209 2-31 (223)
191 3lda_A DNA repair protein RAD5 96.6 0.0074 2.5E-07 65.1 10.5 38 176-213 176-222 (400)
192 3b6e_A Interferon-induced heli 96.6 0.0082 2.8E-07 57.8 9.9 24 179-202 49-72 (216)
193 2if2_A Dephospho-COA kinase; a 96.6 0.0014 4.7E-08 63.3 4.3 29 180-209 3-31 (204)
194 3bh0_A DNAB-like replicative h 96.5 0.017 5.8E-07 60.1 12.7 38 174-211 64-104 (315)
195 3ake_A Cytidylate kinase; CMP 96.5 0.0017 6E-08 62.5 4.7 31 179-209 3-33 (208)
196 3uie_A Adenylyl-sulfate kinase 96.5 0.0021 7E-08 62.2 5.1 24 179-202 26-49 (200)
197 2efe_B Small GTP-binding prote 96.5 0.037 1.3E-06 51.3 13.7 22 180-201 14-35 (181)
198 3lxx_A GTPase IMAP family memb 96.5 0.042 1.4E-06 54.3 14.8 24 179-202 30-53 (239)
199 3r20_A Cytidylate kinase; stru 96.5 0.0018 6.3E-08 64.6 4.7 30 179-208 10-39 (233)
200 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.5E-08 65.1 4.3 29 179-207 28-56 (246)
201 1u8z_A RAS-related protein RAL 96.5 0.029 9.8E-07 51.0 12.7 23 180-202 6-28 (168)
202 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0017 5.9E-08 65.6 4.5 32 179-210 5-39 (260)
203 3nwj_A ATSK2; P loop, shikimat 96.5 0.0017 5.7E-08 65.6 4.3 31 179-209 49-79 (250)
204 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.9E-08 63.3 3.7 29 179-208 3-31 (206)
205 2a9k_A RAS-related protein RAL 96.5 0.025 8.4E-07 52.7 12.2 24 179-202 19-42 (187)
206 3clv_A RAB5 protein, putative; 96.5 0.043 1.5E-06 51.6 14.0 22 180-201 9-30 (208)
207 1w4r_A Thymidine kinase; type 96.4 0.0029 1E-07 61.1 5.6 35 178-212 20-57 (195)
208 1kao_A RAP2A; GTP-binding prot 96.4 0.04 1.4E-06 50.0 13.2 23 180-202 5-27 (167)
209 2bdt_A BH3686; alpha-beta prot 96.4 0.0018 6.3E-08 61.7 4.0 27 179-205 3-29 (189)
210 3a8t_A Adenylate isopentenyltr 96.4 0.0013 4.6E-08 69.0 3.2 32 179-210 41-72 (339)
211 4eaq_A DTMP kinase, thymidylat 96.4 0.011 3.9E-07 58.5 9.9 35 179-213 27-63 (229)
212 3t5g_A GTP-binding protein RHE 96.4 0.038 1.3E-06 51.4 13.1 23 179-201 7-29 (181)
213 2grj_A Dephospho-COA kinase; T 96.4 0.0021 7.3E-08 62.1 4.2 31 179-209 13-43 (192)
214 2i1q_A DNA repair and recombin 96.4 0.0078 2.7E-07 62.7 8.9 26 176-201 96-121 (322)
215 4e22_A Cytidylate kinase; P-lo 96.4 0.0024 8.1E-08 64.4 4.6 29 179-207 28-56 (252)
216 2qor_A Guanylate kinase; phosp 96.4 0.0017 5.9E-08 62.9 3.4 26 178-203 12-37 (204)
217 1rz3_A Hypothetical protein rb 96.3 0.0059 2E-07 59.0 7.0 50 155-209 4-56 (201)
218 2bov_A RAla, RAS-related prote 96.3 0.038 1.3E-06 52.5 12.7 23 180-202 16-38 (206)
219 2ce2_X GTPase HRAS; signaling 96.3 0.051 1.7E-06 49.1 13.1 23 180-202 5-27 (166)
220 1v43_A Sugar-binding transport 96.3 0.014 4.6E-07 62.3 10.3 24 179-202 38-61 (372)
221 1svm_A Large T antigen; AAA+ f 96.3 0.0041 1.4E-07 66.6 6.2 33 178-210 169-201 (377)
222 2wwf_A Thymidilate kinase, put 96.3 0.0016 5.5E-08 63.1 2.8 25 179-203 11-35 (212)
223 3tau_A Guanylate kinase, GMP k 96.2 0.0021 7.3E-08 62.6 3.4 26 179-204 9-34 (208)
224 1ex7_A Guanylate kinase; subst 96.2 0.0022 7.6E-08 61.7 3.4 25 179-203 2-26 (186)
225 3cmw_A Protein RECA, recombina 96.2 0.02 6.9E-07 71.7 12.7 39 175-213 729-770 (1706)
226 1vht_A Dephospho-COA kinase; s 96.2 0.0028 9.7E-08 61.9 4.3 30 179-209 5-34 (218)
227 2fg5_A RAB-22B, RAS-related pr 96.2 0.039 1.3E-06 52.2 12.2 23 180-202 25-47 (192)
228 1uf9_A TT1252 protein; P-loop, 96.2 0.0028 9.6E-08 60.8 4.0 29 179-208 9-37 (203)
229 4dsu_A GTPase KRAS, isoform 2B 96.2 0.036 1.2E-06 51.7 11.8 23 180-202 6-28 (189)
230 3con_A GTPase NRAS; structural 96.2 0.041 1.4E-06 51.7 12.1 23 180-202 23-45 (190)
231 1nn5_A Similar to deoxythymidy 96.2 0.002 6.9E-08 62.4 2.8 32 179-210 10-44 (215)
232 3a00_A Guanylate kinase, GMP k 96.2 0.0025 8.6E-08 60.8 3.4 25 179-203 2-26 (186)
233 3vkw_A Replicase large subunit 96.2 0.0043 1.5E-07 67.4 5.6 23 178-200 161-183 (446)
234 4a1f_A DNAB helicase, replicat 96.1 0.037 1.3E-06 58.2 12.5 38 174-211 42-82 (338)
235 3bgw_A DNAB-like replicative h 96.1 0.033 1.1E-06 60.8 12.6 38 174-211 193-233 (444)
236 3oes_A GTPase rhebl1; small GT 96.1 0.052 1.8E-06 51.8 12.6 23 180-202 26-48 (201)
237 1ltq_A Polynucleotide kinase; 96.1 0.003 1E-07 64.9 3.9 29 179-207 3-32 (301)
238 3tr0_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 60.6 3.8 25 179-203 8-32 (205)
239 3dz8_A RAS-related protein RAB 96.1 0.082 2.8E-06 49.8 13.7 23 180-202 25-47 (191)
240 1ek0_A Protein (GTP-binding pr 96.1 0.05 1.7E-06 49.6 11.8 23 180-202 5-27 (170)
241 3d3q_A TRNA delta(2)-isopenten 96.1 0.0034 1.1E-07 66.1 4.0 32 179-210 8-39 (340)
242 2h92_A Cytidylate kinase; ross 96.0 0.0042 1.5E-07 60.5 4.5 30 179-208 4-33 (219)
243 2j41_A Guanylate kinase; GMP, 96.0 0.0031 1.1E-07 60.6 3.4 24 179-202 7-30 (207)
244 1q3t_A Cytidylate kinase; nucl 96.0 0.0045 1.5E-07 61.4 4.6 30 179-208 17-46 (236)
245 2j9r_A Thymidine kinase; TK1, 96.0 0.0095 3.2E-07 58.4 6.8 34 179-212 29-65 (214)
246 1uj2_A Uridine-cytidine kinase 96.0 0.0039 1.3E-07 62.6 4.0 27 179-205 23-49 (252)
247 3fdi_A Uncharacterized protein 96.0 0.0045 1.5E-07 60.2 4.3 29 179-207 7-35 (201)
248 3ney_A 55 kDa erythrocyte memb 96.0 0.0042 1.4E-07 60.3 4.0 26 178-203 19-44 (197)
249 1c1y_A RAS-related protein RAP 96.0 0.071 2.4E-06 48.5 12.3 22 180-201 5-26 (167)
250 1r2q_A RAS-related protein RAB 96.0 0.082 2.8E-06 48.1 12.8 22 180-201 8-29 (170)
251 1q57_A DNA primase/helicase; d 96.0 0.046 1.6E-06 60.6 13.0 38 174-211 238-279 (503)
252 2qt1_A Nicotinamide riboside k 96.0 0.0033 1.1E-07 60.9 3.2 30 179-208 22-52 (207)
253 2yvu_A Probable adenylyl-sulfa 96.0 0.0038 1.3E-07 59.3 3.6 31 179-209 14-47 (186)
254 3bc1_A RAS-related protein RAB 96.0 0.06 2.1E-06 50.3 12.0 22 180-201 13-34 (195)
255 2f6r_A COA synthase, bifunctio 95.9 0.0041 1.4E-07 63.7 3.9 30 179-209 76-105 (281)
256 3kkq_A RAS-related protein M-R 95.9 0.057 2E-06 50.2 11.6 23 179-201 19-41 (183)
257 2h57_A ADP-ribosylation factor 95.9 0.098 3.4E-06 49.1 13.3 23 180-202 23-45 (190)
258 2gf9_A RAS-related protein RAB 95.9 0.077 2.6E-06 49.8 12.5 23 180-202 24-46 (189)
259 1odf_A YGR205W, hypothetical 3 95.9 0.0096 3.3E-07 61.3 6.5 25 179-203 32-56 (290)
260 2hup_A RAS-related protein RAB 95.9 0.098 3.3E-06 49.9 13.4 22 180-201 31-52 (201)
261 3eph_A TRNA isopentenyltransfe 95.9 0.0042 1.4E-07 66.7 3.8 31 179-209 3-33 (409)
262 1z08_A RAS-related protein RAB 95.9 0.099 3.4E-06 47.7 12.8 22 180-201 8-29 (170)
263 3q85_A GTP-binding protein REM 95.8 0.046 1.6E-06 50.0 10.4 21 180-200 4-24 (169)
264 1lvg_A Guanylate kinase, GMP k 95.8 0.0042 1.4E-07 60.1 3.2 25 179-203 5-29 (198)
265 1nrj_B SR-beta, signal recogni 95.8 0.063 2.2E-06 51.7 11.8 24 179-202 13-36 (218)
266 3c8u_A Fructokinase; YP_612366 95.8 0.0057 1.9E-07 59.4 4.2 25 179-203 23-47 (208)
267 1zd9_A ADP-ribosylation factor 95.8 0.089 3.1E-06 49.5 12.6 22 180-201 24-45 (188)
268 3tkl_A RAS-related protein RAB 95.8 0.087 3E-06 49.5 12.4 23 180-202 18-40 (196)
269 2fn4_A P23, RAS-related protei 95.8 0.069 2.4E-06 49.3 11.5 23 179-201 10-32 (181)
270 3tui_C Methionine import ATP-b 95.8 0.025 8.5E-07 60.1 9.2 25 179-203 55-79 (366)
271 2zts_A Putative uncharacterize 95.8 0.014 4.6E-07 57.7 6.8 36 176-211 28-67 (251)
272 1ls1_A Signal recognition part 95.7 0.13 4.4E-06 52.9 14.4 35 178-212 98-135 (295)
273 1z06_A RAS-related protein RAB 95.7 0.063 2.1E-06 50.5 11.2 22 180-201 22-43 (189)
274 3cmu_A Protein RECA, recombina 95.7 0.048 1.6E-06 69.2 12.9 39 175-213 380-421 (2050)
275 3q72_A GTP-binding protein RAD 95.7 0.026 8.7E-07 51.6 8.1 21 180-200 4-24 (166)
276 1j8m_F SRP54, signal recogniti 95.7 0.2 6.7E-06 51.6 15.6 35 178-212 98-135 (297)
277 2oil_A CATX-8, RAS-related pro 95.7 0.079 2.7E-06 49.9 11.7 23 180-202 27-49 (193)
278 2y8e_A RAB-protein 6, GH09086P 95.7 0.076 2.6E-06 48.9 11.2 22 180-201 16-37 (179)
279 1zu4_A FTSY; GTPase, signal re 95.6 0.41 1.4E-05 49.7 17.9 35 178-212 105-142 (320)
280 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.18 6.1E-06 46.4 13.6 22 180-201 9-30 (177)
281 1m7g_A Adenylylsulfate kinase; 95.6 0.0063 2.1E-07 59.2 3.5 32 179-210 26-61 (211)
282 3asz_A Uridine kinase; cytidin 95.6 0.0059 2E-07 59.1 3.3 25 179-203 7-31 (211)
283 1zbd_A Rabphilin-3A; G protein 95.6 0.073 2.5E-06 50.6 11.1 22 180-201 10-31 (203)
284 2atv_A RERG, RAS-like estrogen 95.6 0.11 3.6E-06 49.2 12.2 22 180-201 30-51 (196)
285 1z2a_A RAS-related protein RAB 95.6 0.065 2.2E-06 48.8 10.3 22 180-201 7-28 (168)
286 2fu5_C RAS-related protein RAB 95.6 0.098 3.3E-06 48.6 11.7 22 180-201 10-31 (183)
287 1upt_A ARL1, ADP-ribosylation 95.5 0.19 6.6E-06 45.8 13.5 22 180-201 9-30 (171)
288 1ksh_A ARF-like protein 2; sma 95.5 0.17 5.8E-06 47.1 13.2 23 179-201 19-41 (186)
289 1s96_A Guanylate kinase, GMP k 95.5 0.0077 2.6E-07 59.4 3.9 26 178-203 16-41 (219)
290 4b3f_X DNA-binding protein smu 95.5 0.022 7.6E-07 65.3 8.2 47 153-209 190-239 (646)
291 1z0f_A RAB14, member RAS oncog 95.5 0.11 3.8E-06 47.7 11.7 23 180-202 17-39 (179)
292 2qmh_A HPR kinase/phosphorylas 95.5 0.0075 2.6E-07 58.5 3.5 28 179-207 35-62 (205)
293 3hdt_A Putative kinase; struct 95.5 0.0086 3E-07 59.2 4.0 30 179-208 15-44 (223)
294 3f8t_A Predicted ATPase involv 95.5 0.16 5.6E-06 55.4 14.2 22 180-202 241-263 (506)
295 2a5j_A RAS-related protein RAB 95.5 0.14 4.8E-06 48.1 12.5 23 180-202 23-45 (191)
296 1z0j_A RAB-22, RAS-related pro 95.4 0.15 5E-06 46.4 12.3 23 180-202 8-30 (170)
297 1znw_A Guanylate kinase, GMP k 95.4 0.0088 3E-07 58.0 3.8 25 179-203 21-45 (207)
298 1p9r_A General secretion pathw 95.4 0.015 5.1E-07 63.0 6.0 50 145-203 143-192 (418)
299 3e70_C DPA, signal recognition 95.4 0.021 7.1E-07 59.9 6.9 31 178-208 129-162 (328)
300 1gtv_A TMK, thymidylate kinase 95.4 0.0046 1.6E-07 59.8 1.7 24 180-203 2-25 (214)
301 1z6g_A Guanylate kinase; struc 95.4 0.0082 2.8E-07 58.9 3.5 24 179-202 24-47 (218)
302 3c5c_A RAS-like protein 12; GD 95.4 0.092 3.1E-06 49.4 10.8 23 180-202 23-45 (187)
303 3vkg_A Dynein heavy chain, cyt 95.3 0.16 5.5E-06 67.2 16.1 141 179-350 1647-1827(3245)
304 1g16_A RAS-related protein SEC 95.3 0.11 3.6E-06 47.4 10.9 22 180-201 5-26 (170)
305 3t1o_A Gliding protein MGLA; G 95.3 0.19 6.6E-06 46.9 12.8 23 180-202 16-38 (198)
306 1htw_A HI0065; nucleotide-bind 95.3 0.011 3.8E-07 55.1 3.9 24 179-202 34-57 (158)
307 4gp7_A Metallophosphoesterase; 95.3 0.0089 3.1E-07 56.2 3.3 21 179-199 10-30 (171)
308 2f9l_A RAB11B, member RAS onco 95.3 0.07 2.4E-06 50.8 9.7 23 180-202 7-29 (199)
309 3thx_B DNA mismatch repair pro 95.2 0.086 2.9E-06 62.5 12.2 23 178-200 673-695 (918)
310 3thx_A DNA mismatch repair pro 95.2 0.06 2.1E-06 64.0 10.8 23 178-200 662-684 (934)
311 3gmt_A Adenylate kinase; ssgci 95.2 0.012 4.1E-07 58.4 4.1 30 180-209 10-39 (230)
312 3reg_A RHO-like small GTPase; 95.2 0.17 5.7E-06 47.7 12.0 23 180-202 25-47 (194)
313 3lnc_A Guanylate kinase, GMP k 95.1 0.0074 2.5E-07 59.5 2.4 25 179-203 28-53 (231)
314 3lxw_A GTPase IMAP family memb 95.1 0.3 1E-05 48.5 14.3 23 180-202 23-45 (247)
315 4a74_A DNA repair and recombin 95.1 0.011 3.7E-07 57.7 3.5 26 177-202 24-49 (231)
316 2ew1_A RAS-related protein RAB 95.1 0.2 6.8E-06 48.0 12.5 23 180-202 28-50 (201)
317 2eyu_A Twitching motility prot 95.1 0.012 4E-07 59.7 3.8 24 179-202 26-49 (261)
318 4edh_A DTMP kinase, thymidylat 95.1 0.019 6.7E-07 56.2 5.2 36 178-213 6-44 (213)
319 3b9q_A Chloroplast SRP recepto 95.1 0.027 9.4E-07 58.2 6.6 31 178-208 100-133 (302)
320 1fzq_A ADP-ribosylation factor 95.1 0.077 2.6E-06 49.7 9.2 23 179-201 17-39 (181)
321 2nzj_A GTP-binding protein REM 95.0 0.094 3.2E-06 48.1 9.6 22 180-201 6-27 (175)
322 2bme_A RAB4A, RAS-related prot 95.0 0.16 5.6E-06 47.1 11.4 23 180-202 12-34 (186)
323 3ihw_A Centg3; RAS, centaurin, 95.0 0.34 1.2E-05 45.4 13.7 23 180-202 22-44 (184)
324 1x6v_B Bifunctional 3'-phospho 95.0 0.019 6.4E-07 65.3 5.4 33 178-210 52-87 (630)
325 1r8s_A ADP-ribosylation factor 95.0 0.3 1E-05 44.2 12.8 22 181-202 3-24 (164)
326 1xjc_A MOBB protein homolog; s 95.0 0.021 7E-07 54.0 4.9 32 179-210 5-39 (169)
327 3tqc_A Pantothenate kinase; bi 95.0 0.032 1.1E-06 58.2 6.8 25 179-203 93-117 (321)
328 3pqc_A Probable GTP-binding pr 95.0 0.49 1.7E-05 44.0 14.6 24 179-202 24-47 (195)
329 3tw8_B RAS-related protein RAB 94.9 0.19 6.4E-06 46.2 11.4 22 180-201 11-32 (181)
330 2p5s_A RAS and EF-hand domain 94.9 0.37 1.3E-05 45.5 13.8 23 180-202 30-52 (199)
331 2ffh_A Protein (FFH); SRP54, s 94.9 0.76 2.6E-05 49.6 17.6 35 177-211 97-134 (425)
332 2orv_A Thymidine kinase; TP4A 94.9 0.031 1.1E-06 55.3 6.1 33 178-210 19-54 (234)
333 1x3s_A RAS-related protein RAB 94.9 0.085 2.9E-06 49.4 9.1 23 180-202 17-39 (195)
334 2e87_A Hypothetical protein PH 94.9 0.82 2.8E-05 48.0 17.5 24 179-202 168-191 (357)
335 2jeo_A Uridine-cytidine kinase 94.9 0.015 5E-07 58.0 3.6 27 179-205 26-52 (245)
336 2xxa_A Signal recognition part 94.9 0.72 2.5E-05 50.0 17.3 36 178-213 100-139 (433)
337 2yc2_C IFT27, small RAB-relate 94.8 0.26 9.1E-06 46.5 12.4 22 180-201 22-43 (208)
338 2og2_A Putative signal recogni 94.8 0.037 1.3E-06 58.6 6.8 31 178-208 157-190 (359)
339 2wsm_A Hydrogenase expression/ 94.8 0.019 6.4E-07 55.8 4.2 45 151-203 11-55 (221)
340 2v9p_A Replication protein E1; 94.8 0.021 7.1E-07 59.2 4.6 31 178-208 126-156 (305)
341 2g6b_A RAS-related protein RAB 94.8 0.27 9.2E-06 45.2 12.1 23 180-202 12-34 (180)
342 3v9p_A DTMP kinase, thymidylat 94.8 0.021 7.3E-07 56.5 4.5 34 179-212 26-66 (227)
343 4dhe_A Probable GTP-binding pr 94.8 0.42 1.4E-05 45.8 13.9 23 179-201 30-52 (223)
344 4bas_A ADP-ribosylation factor 94.8 0.41 1.4E-05 44.8 13.6 23 179-201 18-40 (199)
345 1a7j_A Phosphoribulokinase; tr 94.8 0.0084 2.9E-07 61.7 1.5 25 179-203 6-30 (290)
346 3e1s_A Exodeoxyribonuclease V, 94.7 0.028 9.6E-07 63.5 5.9 31 179-209 205-238 (574)
347 1np6_A Molybdopterin-guanine d 94.7 0.019 6.5E-07 54.4 3.8 31 179-209 7-40 (174)
348 1m2o_B GTP-binding protein SAR 94.7 0.35 1.2E-05 45.5 12.8 22 180-201 25-46 (190)
349 2lkc_A Translation initiation 94.7 0.8 2.8E-05 41.8 15.1 23 179-201 9-31 (178)
350 2f7s_A C25KG, RAS-related prot 94.7 0.088 3E-06 50.6 8.6 22 180-201 27-48 (217)
351 1rj9_A FTSY, signal recognitio 94.7 0.021 7.2E-07 59.2 4.3 25 178-202 102-126 (304)
352 4a2p_A RIG-I, retinoic acid in 94.6 0.48 1.7E-05 52.2 15.7 32 179-210 23-62 (556)
353 3e2i_A Thymidine kinase; Zn-bi 94.6 0.036 1.2E-06 54.3 5.6 33 179-211 29-64 (219)
354 2erx_A GTP-binding protein DI- 94.6 0.23 7.9E-06 45.1 11.0 22 180-201 5-26 (172)
355 2bcg_Y Protein YP2, GTP-bindin 94.6 0.26 9.1E-06 46.7 11.7 23 180-202 10-32 (206)
356 2ocp_A DGK, deoxyguanosine kin 94.5 0.023 7.7E-07 56.4 4.1 25 179-203 3-27 (241)
357 3cbq_A GTP-binding protein REM 94.5 0.15 5.1E-06 48.5 9.7 21 180-200 25-45 (195)
358 3llu_A RAS-related GTP-binding 94.4 0.46 1.6E-05 44.8 13.0 23 180-202 22-44 (196)
359 2hxs_A RAB-26, RAS-related pro 94.4 0.37 1.3E-05 44.2 11.9 22 180-201 8-29 (178)
360 4dkx_A RAS-related protein RAB 94.4 0.26 8.8E-06 48.1 11.2 21 181-201 16-36 (216)
361 2gco_A H9, RHO-related GTP-bin 94.3 0.57 1.9E-05 44.3 13.5 23 180-202 27-49 (201)
362 1g5t_A COB(I)alamin adenosyltr 94.3 0.4 1.4E-05 46.1 12.1 31 179-209 29-62 (196)
363 2ewv_A Twitching motility prot 94.3 0.023 8E-07 60.5 3.8 24 179-202 137-160 (372)
364 2v3c_C SRP54, signal recogniti 94.3 0.051 1.8E-06 59.1 6.5 34 179-212 100-136 (432)
365 2gk6_A Regulator of nonsense t 94.3 0.031 1.1E-06 63.8 5.0 24 179-202 196-219 (624)
366 1p5z_B DCK, deoxycytidine kina 94.2 0.012 4.1E-07 59.3 1.3 28 179-206 25-53 (263)
367 2fwr_A DNA repair protein RAD2 94.2 0.23 7.8E-06 54.1 11.7 33 180-212 110-142 (472)
368 3tif_A Uncharacterized ABC tra 94.2 0.021 7.3E-07 56.8 3.1 25 179-203 32-56 (235)
369 1nlf_A Regulatory protein REPA 94.2 0.022 7.6E-07 57.8 3.2 25 178-202 30-54 (279)
370 1wb9_A DNA mismatch repair pro 94.1 0.26 8.8E-06 57.7 12.4 24 178-201 607-630 (800)
371 2oap_1 GSPE-2, type II secreti 94.1 0.028 9.5E-07 62.5 4.1 32 179-210 261-294 (511)
372 3tbk_A RIG-I helicase domain; 94.1 0.67 2.3E-05 50.9 15.4 32 179-210 20-59 (555)
373 3lv8_A DTMP kinase, thymidylat 94.1 0.053 1.8E-06 54.0 5.7 35 178-212 27-65 (236)
374 2qu8_A Putative nucleolar GTP- 94.1 0.87 3E-05 44.1 14.6 23 179-201 30-52 (228)
375 2pcj_A ABC transporter, lipopr 94.1 0.021 7E-07 56.4 2.7 25 179-203 31-55 (224)
376 3kta_A Chromosome segregation 94.1 0.029 1E-06 52.7 3.6 26 179-204 27-52 (182)
377 2o52_A RAS-related protein RAB 94.1 0.23 7.8E-06 47.2 10.0 22 180-201 27-48 (200)
378 2gf0_A GTP-binding protein DI- 94.1 0.32 1.1E-05 45.6 10.9 22 180-201 10-31 (199)
379 3tmk_A Thymidylate kinase; pho 94.0 0.043 1.5E-06 53.9 4.8 31 179-209 6-36 (216)
380 1g8f_A Sulfate adenylyltransfe 94.0 0.035 1.2E-06 61.5 4.6 26 179-204 396-421 (511)
381 2cbz_A Multidrug resistance-as 94.0 0.025 8.5E-07 56.3 3.1 24 179-202 32-55 (237)
382 3aez_A Pantothenate kinase; tr 94.0 0.028 9.5E-07 58.4 3.5 25 179-203 91-115 (312)
383 1sq5_A Pantothenate kinase; P- 94.0 0.027 9.4E-07 58.3 3.4 25 179-203 81-105 (308)
384 2ged_A SR-beta, signal recogni 93.9 0.051 1.8E-06 51.1 5.0 24 179-202 49-72 (193)
385 2f1r_A Molybdopterin-guanine d 93.9 0.023 7.8E-07 53.7 2.5 24 179-202 3-26 (171)
386 3cpj_B GTP-binding protein YPT 93.9 0.34 1.2E-05 46.8 11.1 23 180-202 15-37 (223)
387 3b85_A Phosphate starvation-in 93.9 0.023 8E-07 55.4 2.6 23 179-201 23-45 (208)
388 3q3j_B RHO-related GTP-binding 93.9 0.83 2.8E-05 43.9 13.8 22 180-201 29-50 (214)
389 2hf9_A Probable hydrogenase ni 93.9 0.046 1.6E-06 53.1 4.7 42 153-202 21-62 (226)
390 2axn_A 6-phosphofructo-2-kinas 93.9 0.041 1.4E-06 61.3 4.8 25 179-203 36-60 (520)
391 1b0u_A Histidine permease; ABC 93.8 0.027 9.4E-07 56.9 3.0 25 179-203 33-57 (262)
392 2onk_A Molybdate/tungstate ABC 93.8 0.031 1E-06 55.8 3.3 25 179-203 25-49 (240)
393 1svi_A GTP-binding protein YSX 93.8 0.32 1.1E-05 45.5 10.3 23 179-201 24-46 (195)
394 1sgw_A Putative ABC transporte 93.7 0.027 9.2E-07 55.3 2.7 25 179-203 36-60 (214)
395 4tmk_A Protein (thymidylate ki 93.7 0.07 2.4E-06 52.2 5.7 34 179-212 4-41 (213)
396 3fvq_A Fe(3+) IONS import ATP- 93.7 0.029 9.9E-07 59.4 3.1 24 179-202 31-54 (359)
397 1q0u_A Bstdead; DEAD protein, 93.7 0.24 8.3E-06 47.8 9.6 21 179-199 42-62 (219)
398 2r2a_A Uncharacterized protein 93.7 0.037 1.3E-06 53.6 3.6 23 179-201 6-28 (199)
399 2zu0_C Probable ATP-dependent 93.7 0.036 1.2E-06 56.2 3.6 23 179-201 47-69 (267)
400 1c9k_A COBU, adenosylcobinamid 93.7 0.034 1.2E-06 53.0 3.2 31 181-212 2-32 (180)
401 2d2e_A SUFC protein; ABC-ATPas 93.7 0.034 1.2E-06 55.8 3.5 23 179-201 30-52 (250)
402 3tqf_A HPR(Ser) kinase; transf 93.7 0.044 1.5E-06 51.8 3.9 28 179-207 17-44 (181)
403 2h17_A ADP-ribosylation factor 93.7 0.32 1.1E-05 45.1 10.1 22 180-201 23-44 (181)
404 2pze_A Cystic fibrosis transme 93.6 0.031 1.1E-06 55.3 3.0 25 179-203 35-59 (229)
405 1g6h_A High-affinity branched- 93.6 0.031 1E-06 56.4 3.0 25 179-203 34-58 (257)
406 3p32_A Probable GTPase RV1496/ 93.6 0.081 2.8E-06 55.8 6.4 32 179-210 80-114 (355)
407 1ji0_A ABC transporter; ATP bi 93.6 0.031 1.1E-06 55.7 3.0 24 179-202 33-56 (240)
408 3gfo_A Cobalt import ATP-bindi 93.6 0.032 1.1E-06 57.0 3.0 25 179-203 35-59 (275)
409 1ewq_A DNA mismatch repair pro 93.6 0.33 1.1E-05 56.5 11.9 23 179-201 577-599 (765)
410 2olj_A Amino acid ABC transpor 93.6 0.034 1.2E-06 56.4 3.1 25 179-203 51-75 (263)
411 3d31_A Sulfate/molybdate ABC t 93.5 0.034 1.2E-06 58.7 3.2 25 179-203 27-51 (348)
412 2ff7_A Alpha-hemolysin translo 93.5 0.032 1.1E-06 55.9 3.0 25 179-203 36-60 (247)
413 2wjy_A Regulator of nonsense t 93.5 0.05 1.7E-06 63.8 5.0 24 179-202 372-395 (800)
414 1mv5_A LMRA, multidrug resista 93.5 0.033 1.1E-06 55.6 3.0 24 179-202 29-52 (243)
415 2iut_A DNA translocase FTSK; n 93.5 0.36 1.2E-05 54.0 11.5 24 179-202 215-238 (574)
416 1z47_A CYSA, putative ABC-tran 93.5 0.036 1.2E-06 58.6 3.4 25 179-203 42-66 (355)
417 2it1_A 362AA long hypothetical 93.5 0.037 1.3E-06 58.7 3.4 25 179-203 30-54 (362)
418 3rlf_A Maltose/maltodextrin im 93.5 0.037 1.3E-06 59.1 3.4 25 179-203 30-54 (381)
419 2b6h_A ADP-ribosylation factor 93.5 0.25 8.5E-06 46.7 9.0 21 180-200 31-51 (192)
420 1zj6_A ADP-ribosylation factor 93.5 0.49 1.7E-05 44.0 11.0 23 179-201 17-39 (187)
421 2qi9_C Vitamin B12 import ATP- 93.4 0.035 1.2E-06 55.7 3.0 25 179-203 27-51 (249)
422 2yyz_A Sugar ABC transporter, 93.4 0.038 1.3E-06 58.6 3.4 24 179-202 30-53 (359)
423 2ixe_A Antigen peptide transpo 93.4 0.036 1.2E-06 56.3 3.1 25 179-203 46-70 (271)
424 2ghi_A Transport protein; mult 93.4 0.037 1.3E-06 55.9 3.1 24 179-202 47-70 (260)
425 1vpl_A ABC transporter, ATP-bi 93.4 0.038 1.3E-06 55.8 3.1 25 179-203 42-66 (256)
426 1m8p_A Sulfate adenylyltransfe 93.4 0.07 2.4E-06 60.2 5.6 25 179-203 397-421 (573)
427 2ihy_A ABC transporter, ATP-bi 93.3 0.037 1.3E-06 56.6 3.0 25 179-203 48-72 (279)
428 4a2q_A RIG-I, retinoic acid in 93.3 0.76 2.6E-05 53.7 14.7 32 179-210 264-303 (797)
429 2yv5_A YJEQ protein; hydrolase 93.3 0.045 1.5E-06 56.5 3.7 24 179-203 166-189 (302)
430 4g1u_C Hemin import ATP-bindin 93.3 0.037 1.3E-06 56.1 3.0 24 179-202 38-61 (266)
431 1t6n_A Probable ATP-dependent 93.3 0.48 1.7E-05 45.6 11.0 24 179-202 52-75 (220)
432 1g29_1 MALK, maltose transport 93.3 0.042 1.4E-06 58.6 3.4 24 179-202 30-53 (372)
433 1lw7_A Transcriptional regulat 93.3 0.05 1.7E-06 57.6 4.0 27 179-205 171-197 (365)
434 2yz2_A Putative ABC transporte 93.2 0.041 1.4E-06 55.7 3.1 24 179-202 34-57 (266)
435 2nq2_C Hypothetical ABC transp 93.2 0.041 1.4E-06 55.4 3.0 25 179-203 32-56 (253)
436 1oxx_K GLCV, glucose, ABC tran 93.2 0.035 1.2E-06 58.8 2.6 24 179-202 32-55 (353)
437 1u0l_A Probable GTPase ENGC; p 93.2 0.042 1.4E-06 56.7 3.2 25 179-203 170-194 (301)
438 4i1u_A Dephospho-COA kinase; s 93.2 0.063 2.2E-06 52.5 4.2 30 180-210 11-40 (210)
439 2yhs_A FTSY, cell division pro 93.1 0.047 1.6E-06 60.1 3.6 30 178-207 293-325 (503)
440 3ld9_A DTMP kinase, thymidylat 93.1 0.052 1.8E-06 53.6 3.5 30 179-208 22-55 (223)
441 2il1_A RAB12; G-protein, GDP, 93.1 0.47 1.6E-05 44.5 10.3 22 180-201 28-49 (192)
442 4a2w_A RIG-I, retinoic acid in 93.1 0.89 3E-05 54.3 14.9 24 179-202 264-287 (936)
443 1w36_D RECD, exodeoxyribonucle 93.0 0.049 1.7E-06 61.9 3.8 24 179-202 165-188 (608)
444 2rcn_A Probable GTPase ENGC; Y 93.0 0.038 1.3E-06 58.5 2.6 25 179-203 216-240 (358)
445 3iev_A GTP-binding protein ERA 93.0 1.3 4.5E-05 45.4 14.4 24 178-201 10-33 (308)
446 2gza_A Type IV secretion syste 93.0 0.035 1.2E-06 58.9 2.3 25 179-203 176-200 (361)
447 4hlc_A DTMP kinase, thymidylat 93.0 0.11 3.8E-06 50.4 5.7 35 179-213 3-39 (205)
448 3cr8_A Sulfate adenylyltranfer 92.9 0.043 1.5E-06 61.6 3.0 25 179-203 370-394 (552)
449 2v6i_A RNA helicase; membrane, 92.9 0.16 5.5E-06 55.0 7.5 32 179-210 3-38 (431)
450 3sop_A Neuronal-specific septi 92.9 0.05 1.7E-06 55.3 3.2 23 180-202 4-26 (270)
451 3gd7_A Fusion complex of cysti 92.8 0.049 1.7E-06 58.4 3.2 24 179-202 48-71 (390)
452 2pjz_A Hypothetical protein ST 92.8 0.047 1.6E-06 55.3 2.9 24 179-202 31-54 (263)
453 2ykg_A Probable ATP-dependent 92.8 1.6 5.5E-05 49.8 16.2 24 179-202 29-52 (696)
454 1oix_A RAS-related protein RAB 92.8 0.05 1.7E-06 51.6 2.9 23 180-202 31-53 (191)
455 2xau_A PRE-mRNA-splicing facto 92.8 0.91 3.1E-05 53.0 14.1 24 179-202 110-133 (773)
456 2p6r_A Afuhel308 helicase; pro 92.8 0.15 5.3E-06 58.7 7.5 32 179-210 41-75 (702)
457 3def_A T7I23.11 protein; chlor 92.7 0.87 3E-05 45.4 12.1 24 179-202 37-60 (262)
458 2xzl_A ATP-dependent helicase 92.6 0.07 2.4E-06 62.6 4.4 24 179-202 376-399 (802)
459 1tq4_A IIGP1, interferon-induc 92.6 0.095 3.3E-06 56.6 5.1 39 158-202 55-93 (413)
460 3szr_A Interferon-induced GTP- 92.6 0.27 9.2E-06 55.8 9.1 24 179-202 46-69 (608)
461 2j37_W Signal recognition part 92.6 0.19 6.5E-06 55.6 7.6 33 179-211 102-137 (504)
462 3pey_A ATP-dependent RNA helic 92.6 0.65 2.2E-05 48.5 11.5 22 179-200 45-66 (395)
463 2o8b_B DNA mismatch repair pro 92.5 0.6 2E-05 56.1 12.2 21 179-199 790-810 (1022)
464 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.071 2.4E-06 49.0 3.3 24 179-202 24-47 (149)
465 2dyk_A GTP-binding protein; GT 92.5 0.072 2.5E-06 48.2 3.4 23 180-202 3-25 (161)
466 2bbs_A Cystic fibrosis transme 92.4 0.054 1.9E-06 55.6 2.8 24 179-202 65-88 (290)
467 1dek_A Deoxynucleoside monopho 92.4 0.067 2.3E-06 53.4 3.3 29 179-207 2-30 (241)
468 2vp4_A Deoxynucleoside kinase; 92.4 0.073 2.5E-06 52.4 3.5 32 178-210 20-51 (230)
469 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.04 1.4E-06 57.7 1.7 33 179-211 172-206 (330)
470 3hjn_A DTMP kinase, thymidylat 92.3 0.14 4.9E-06 49.2 5.5 33 181-213 3-38 (197)
471 2zej_A Dardarin, leucine-rich 92.3 0.058 2E-06 50.6 2.5 22 180-201 4-25 (184)
472 4f4c_A Multidrug resistance pr 92.1 0.19 6.4E-06 62.4 7.5 26 179-204 445-470 (1321)
473 2wji_A Ferrous iron transport 92.1 0.074 2.5E-06 48.9 3.0 22 180-201 5-26 (165)
474 1bif_A 6-phosphofructo-2-kinas 92.1 0.076 2.6E-06 58.3 3.6 25 179-203 40-64 (469)
475 3nh6_A ATP-binding cassette SU 92.0 0.066 2.3E-06 55.4 2.8 25 179-203 81-105 (306)
476 1yrb_A ATP(GTP)binding protein 91.9 0.15 5.1E-06 50.7 5.2 32 179-210 15-48 (262)
477 2obl_A ESCN; ATPase, hydrolase 91.9 0.12 4.3E-06 54.3 4.8 29 179-207 72-100 (347)
478 3r7w_A Gtpase1, GTP-binding pr 91.8 1.9 6.6E-05 44.1 13.7 22 180-201 5-26 (307)
479 3ch4_B Pmkase, phosphomevalona 91.8 0.11 3.7E-06 50.4 3.8 28 177-204 10-37 (202)
480 2z83_A Helicase/nucleoside tri 91.7 0.5 1.7E-05 51.5 9.6 32 179-210 22-57 (459)
481 2qm8_A GTPase/ATPase; G protei 91.7 0.093 3.2E-06 55.1 3.6 24 179-202 56-79 (337)
482 2wjg_A FEOB, ferrous iron tran 91.4 0.097 3.3E-06 48.9 3.0 23 179-201 8-30 (188)
483 1ky3_A GTP-binding protein YPT 91.3 0.11 3.7E-06 47.9 3.2 23 180-202 10-32 (182)
484 2gks_A Bifunctional SAT/APS ki 91.3 0.14 4.9E-06 57.2 4.7 25 179-203 373-397 (546)
485 2dpy_A FLII, flagellum-specifi 91.2 0.15 5.2E-06 55.4 4.8 29 179-207 158-186 (438)
486 2va8_A SSO2462, SKI2-type heli 91.2 0.56 1.9E-05 54.1 9.8 32 179-210 47-82 (715)
487 1wp9_A ATP-dependent RNA helic 91.1 0.84 2.9E-05 48.7 10.6 32 180-211 25-60 (494)
488 2www_A Methylmalonic aciduria 91.1 0.28 9.6E-06 51.6 6.5 24 179-202 75-98 (349)
489 2zpa_A Uncharacterized protein 91.0 0.37 1.3E-05 54.9 7.8 35 179-214 193-227 (671)
490 1nij_A Hypothetical protein YJ 90.9 0.093 3.2E-06 54.5 2.5 24 179-202 5-28 (318)
491 2npi_A Protein CLP1; CLP1-PCF1 90.9 0.1 3.5E-06 57.2 2.9 24 179-202 139-162 (460)
492 3ug7_A Arsenical pump-driving 90.7 0.21 7.1E-06 52.6 5.1 35 178-212 26-63 (349)
493 3cio_A ETK, tyrosine-protein k 90.6 0.44 1.5E-05 48.9 7.4 53 156-212 86-142 (299)
494 2gj8_A MNME, tRNA modification 90.6 0.12 3.9E-06 48.1 2.7 23 179-201 5-27 (172)
495 1pui_A ENGB, probable GTP-bind 90.6 0.059 2E-06 51.5 0.6 23 179-201 27-49 (210)
496 3bfv_A CAPA1, CAPB2, membrane 90.5 0.47 1.6E-05 47.9 7.4 53 156-212 64-120 (271)
497 2zj8_A DNA helicase, putative 90.5 0.51 1.8E-05 54.5 8.7 33 179-211 40-76 (720)
498 1m7b_A RND3/RHOE small GTP-bin 90.5 0.13 4.3E-06 48.2 2.9 22 180-201 9-30 (184)
499 3qks_A DNA double-strand break 90.5 0.14 4.9E-06 49.4 3.3 26 179-204 24-49 (203)
500 1udx_A The GTP-binding protein 90.5 0.88 3E-05 49.0 9.8 22 180-201 159-180 (416)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.9e-41 Score=377.70 Aligned_cols=402 Identities=16% Similarity=0.171 Sum_probs=270.5
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC---------CCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS---------KDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~---------~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
....+|++||+|+++++|+|+++.+++|..|++.|.... .+..+.+.+||+||||||||++|+++|+++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999764211 01113378999999999999999999999999
Q ss_pred cEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCC------CCCCCceEEEEeCCCCCcchhHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP------GESKSSAILLIDDLPVTNGRTAF 278 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~------~~~~~~~IIlIDEid~l~~~~~~ 278 (666)
.++++++++..... .+...+..+.....+...+. .....+.||||||+|.+.....
T Consensus 104 ~~i~in~s~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~- 165 (516)
T 1sxj_A 104 DILEQNASDVRSKT-----------------LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR- 165 (516)
T ss_dssp EEEEECTTSCCCHH-----------------HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-
T ss_pred CEEEEeCCCcchHH-----------------HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-
Confidence 99999998743210 00000000000000000000 0123567999999998865321
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 279 ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 279 ~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
.....|..+++..+.|+|+++++... ..+..+ .+ +|..|.|++++.+++.++|..+|..+++.+++
T Consensus 166 -~~l~~L~~~l~~~~~~iIli~~~~~~--------~~l~~l----~~-r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~ 231 (516)
T 1sxj_A 166 -GGVGQLAQFCRKTSTPLILICNERNL--------PKMRPF----DR-VCLDIQFRRPDANSIKSRLMTIAIREKFKLDP 231 (516)
T ss_dssp -THHHHHHHHHHHCSSCEEEEESCTTS--------STTGGG----TT-TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT
T ss_pred -HHHHHHHHHHHhcCCCEEEEEcCCCC--------ccchhh----Hh-ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12344667777788888887765321 122222 22 68999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCC
Q 005987 359 EQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRET 438 (666)
Q Consensus 359 ~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~ 438 (666)
++++.|++.++||+|.+++.||+++........ ... ........||..+++|+++++||++++..
T Consensus 232 ~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~----------~~v-----~~~~~~~~~~~~~~~f~~~~~il~~~~~~ 296 (516)
T 1sxj_A 232 NVIDRLIQTTRGDIRQVINLLSTISTTTKTINH----------ENI-----NEISKAWEKNIALKPFDIAHKMLDGQIYS 296 (516)
T ss_dssp THHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCT----------THH-----HHHHHHHHTTTTSHHHHHHHHHTBGGGTS
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCch----------HHH-----HHHHHhhccCCCCCHHHHHHHHhcCCccc
Confidence 999999999999999999999999864322110 000 00011234888999999999999988643
Q ss_pred CccccccccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCC------cchHHHHHHHHHHhhHhhhc
Q 005987 439 DNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFIS------EDAIDDAWAVASYLSDADLL 512 (666)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~------d~~i~~~~~~~d~LS~aD~l 512 (666)
.... . ....++.++....+++.+..||||||+.+++ +..+++++.++|+||++|++
T Consensus 297 ~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~i~eNy~~~~p~~~~~~~~~l~~~~~a~d~ls~~D~~ 358 (516)
T 1sxj_A 297 DIGS----R--------------NFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIV 358 (516)
T ss_dssp TTGG----G--------------TSCHHHHHHHHTTSTTTHHHHHHHHSSSSEESCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc----c--------------CCCHHHhhhhhccCHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHHhHHHHH
Confidence 3210 0 0123456677777999999999999988763 13699999999999999999
Q ss_pred cccccCccccccchhHHHHHHHHHHHHHHHhhhCCCCCCCCcccccCCcchhhhhhhHHHHHHHHHhhhccccCCccccc
Q 005987 513 LASFRGRLVRYNEADNVLQSAAASVAARGVLFGNSHPVPPRWHAIRKPKLWRVDQSSLQKKKELLKKKFMAWDGSISADV 592 (666)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~a~sva~RGv~~~n~~p~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 592 (666)
.+++++..+.|. ++..++...+++...+.... .+.++++|+||+.+++..+++ ++++.....
T Consensus 359 ~~~i~~~~q~~~----l~~~~~~~~~v~p~~~~~g~----~~~~~~fp~~~~~~s~~~k~~-r~~~~l~~~--------- 420 (516)
T 1sxj_A 359 EKKIRSSEQLWS----LLPLHAVLSSVYPASKVAGH----MAGRINFTAWLGQNSKSAKYY-RLLQEIHYH--------- 420 (516)
T ss_dssp HHHHTTCSSCGG----GHHHHHHHHTHHHHHTTCEE----CSSCCCCCSHHHHHHHHHHHH-HHHHHHHTT---------
T ss_pred HHHHccCCCCcc----cchhhHhhhhhccHHHhCCC----CCCCCcCCHHHhhhchhhHHH-HHHHHHHHH---------
Confidence 998876223453 33333332223322121111 135799999999987665433 333332222
Q ss_pred ccCCCCCchhhhhhhhhhhhHHhhcC
Q 005987 593 YNGSSSSDVSVLATEYAPALKWLGNR 618 (666)
Q Consensus 593 ~~~~~~~~~~~~~~e~lP~l~~i~~~ 618 (666)
.+...+.+..+++++|||+|..+..+
T Consensus 421 ~~~~~~~~~~~~~~~~lp~l~~~~~~ 446 (516)
T 1sxj_A 421 TRLGTSTXXXXXXXXXXXXXXXXXXX 446 (516)
T ss_dssp TTTCCCHHHHHTTTHHHHHHHHSCCC
T ss_pred hhhhhccccccccccccccccccccc
Confidence 12223344558999999999998653
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.93 E-value=2.5e-24 Score=227.78 Aligned_cols=283 Identities=14% Similarity=0.227 Sum_probs=185.2
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
...+|++||+|+++++++|+++.++.++.|++. ++.+ +.+|++||||||||++++++|++++..++++++++.
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------~~~~-~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSK------GKIP-HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------TCCC-SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------CCCC-eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 467999999999999999999999999999985 5555 689999999999999999999999999999998652
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI 294 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~ 294 (666)
+ .+.++..+......... .+.+.||||||++.+.+....+.+...+.... ...
T Consensus 85 ------------~------~~~i~~~~~~~~~~~~~-------~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~--~~~ 137 (324)
T 3u61_B 85 ------------K------IDFVRGPLTNFASAASF-------DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS--SNC 137 (324)
T ss_dssp ------------C------HHHHHTHHHHHHHBCCC-------SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG--GGC
T ss_pred ------------C------HHHHHHHHHHHHhhccc-------CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC--CCc
Confidence 1 22334444433222211 12467999999999863333343433333221 122
Q ss_pred ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHH
Q 005987 295 PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGS-------IKRTLSKICRQEQYSLST-EQIDLVAQ 366 (666)
Q Consensus 295 PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~-------i~kiL~~I~~~e~i~v~~-~~l~~Ia~ 366 (666)
.+|++++. ..+..+.|.+ ||..|.|++|+.++ +.+.+..++..+++.+++ ++++.|+.
T Consensus 138 -~iI~~~n~--------~~~l~~~l~s-----R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 203 (324)
T 3u61_B 138 -SIIITANN--------IDGIIKPLQS-----RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVK 203 (324)
T ss_dssp -EEEEEESS--------GGGSCTTHHH-----HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHH
T ss_pred -EEEEEeCC--------ccccCHHHHh-----hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 33333331 1122333443 47899999999876 566677788889999988 99999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccc
Q 005987 367 ASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQ 446 (666)
Q Consensus 367 ~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~ 446 (666)
.++||+|.|+|.||.++..+ .. . . +.+..+... .-.+|..+..+ .++....
T Consensus 204 ~~~gd~R~a~~~L~~~~~~~-~i-~----------------~-~~v~~~~~~--~~~i~~~~~~~-~~~~~~~------- 254 (324)
T 3u61_B 204 KNFPDFRKTIGELDSYSSKG-VL-D----------------A-GILSLVTND--RGAIDDVLESL-KNKDVKQ------- 254 (324)
T ss_dssp HTCSCTTHHHHHHHHHGGGT-CB-C----------------C---------------CHHHHHHH-HTTCHHH-------
T ss_pred hCCCCHHHHHHHHHHHhccC-CC-C----------------H-HHHHHHhCC--HHHHHHHHHHH-HcCCHHH-------
Confidence 99999999999999998221 11 0 0 001111111 12344443333 2221000
Q ss_pred cchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCCCCcchHHHHHHHHHHhhHhhhcccc
Q 005987 447 DAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYLSDADLLLAS 515 (666)
Q Consensus 447 ~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f~~d~~i~~~~~~~d~LS~aD~l~~~ 515 (666)
.. ..+...-.++..++..|++++..-++ .+....++++|+.+|..+..
T Consensus 255 ----a~--------------~~~~~l~~~~~~i~~~l~~~~~~~~~---~~~l~~i~~~l~~~d~~l~~ 302 (324)
T 3u61_B 255 ----LR--------------ALAPKYAADYSWFVGKLAEEIYSRVT---PQSIIRMYEIVGENNQYHGI 302 (324)
T ss_dssp ----HH--------------HHHHHHSSCHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTTT
T ss_pred ----HH--------------HHHHHhccCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHh
Confidence 00 01111111677788889999888665 46778889999999998864
No 3
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=1.6e-22 Score=216.23 Aligned_cols=309 Identities=16% Similarity=0.237 Sum_probs=181.2
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHH-HHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-CCcE--EEEc--
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWF-EERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-GARL--YEWD-- 210 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL-~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g~~v--iE~n-- 210 (666)
.+|++||+|+++++++||+..++.++.|+ .. ++.+ + ++|+||+|+||||+++++|+++ +... +.++
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~------~~~~-~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQP------RDLP-H-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT------TCCC-C-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhC------CCCC-e-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 37999999999999999999998888877 43 4555 4 9999999999999999999975 2110 0000
Q ss_pred ---CCCch-hh-----h-hhh--hcccCCccccchhHHHHHHHHHHHhhcCCCCC--CCCCCCCceEEEEeCCCCCcchh
Q 005987 211 ---TPTPT-IW-----Q-EYM--HNCKTGLEYTSKLDEFENFVERIRRYGSTSPS--IPGESKSSAILLIDDLPVTNGRT 276 (666)
Q Consensus 211 ---asd~~-~~-----~-e~l--~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s--~~~~~~~~~IIlIDEid~l~~~~ 276 (666)
.+... .. . .++ .....+.. ....+++.++.+..+..+... ..+-...++||||||++.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~- 149 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNN---DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD- 149 (354)
T ss_dssp ------------CCEECSSEEEECCC----C---CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-
T ss_pred eecccccccceeeeecccceEEecHhhcCCc---chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-
Confidence 00000 00 0 000 00000000 001244455544332211000 0110224679999999997542
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCC
Q 005987 277 AFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL 356 (666)
Q Consensus 277 ~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v 356 (666)
..+.+...|... .....+|++++.. .+.++.++ + ||..+.|++++.+++.++|..++.++++.+
T Consensus 150 ~~~~L~~~le~~---~~~~~~Il~t~~~--------~~l~~~l~---s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 150 AQAALRRTMEKY---SKNIRLIMVCDSM--------SPIIAPIK---S--QCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp HHHHHHHHHHHS---TTTEEEEEEESCS--------CSSCHHHH---T--TSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhh---cCCCEEEEEeCCH--------HHHHHHHH---h--hceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 334443333332 1222444444421 12233333 2 589999999999999999999999999999
Q ss_pred C-HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCC
Q 005987 357 S-TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435 (666)
Q Consensus 357 ~-~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~K 435 (666)
+ +++++.|+..++||+|.|++.||.++....... +... .+...+..-.+|..+..++...
T Consensus 214 ~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~~~~i----------------~~~~---~~~~~~~~~~~~~l~~~i~~~~ 274 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNLRVSLLMLESMALNNELAL----------------KSSS---PIIKPDWIIVIHKLTRKIVKER 274 (354)
T ss_dssp CCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTTTEE----------------CSSC---CCCCCHHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCc----------------CcCc---CCCCccHHHHHHHHHHHHHHhc
Confidence 9 999999999999999999999998876432100 0001 1233444456788888888653
Q ss_pred CCCCccccccccchhhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCC--CCCcchHHHHHHHHHHhhHhhhcc
Q 005987 436 RETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLD--FISEDAIDDAWAVASYLSDADLLL 513 (666)
Q Consensus 436 r~~~~~~~~~~~~~~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~--f~~d~~i~~~~~~~d~LS~aD~l~ 513 (666)
.. .... ...+.+ .+++ ..+.++..++.-|+..+.. -++ .+...++++.++..|.-+
T Consensus 275 ~~--~~~~------~~~~~l----------~~l~-~~g~~~~~i~~~l~~~~~~~~~~~---~~~l~~~~~~l~~~d~~l 332 (354)
T 1sxj_E 275 SV--NSLI------ECRAVL----------YDLL-AHCIPANIILKELTFSLLDVETLN---TTNKSSIIEYSSVFDERL 332 (354)
T ss_dssp SH--HHHH------HHHHHH----------HHHH-TTTCCHHHHHHHHHHTTTTCTTSC---HHHHHHHHHHHHHHHHHH
T ss_pred ch--hHHH------HHHHHH----------HHHH-HcCCCHHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHH
Confidence 11 0000 011100 1122 2456677777778776655 344 456677889999999866
Q ss_pred c
Q 005987 514 A 514 (666)
Q Consensus 514 ~ 514 (666)
.
T Consensus 333 ~ 333 (354)
T 1sxj_E 333 S 333 (354)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=8.9e-22 Score=209.94 Aligned_cols=203 Identities=21% Similarity=0.367 Sum_probs=146.7
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEE
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYE 208 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE 208 (666)
....+|++||+|+++++++||+..++.|..+++. |+.+ +++|+|||||||||+++++|+.+. ..+++
T Consensus 10 ~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~------g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 10 KENLPWVEKYRPETLDEVYGQNEVITTVRKFVDE------GKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT------TCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred ccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc------CCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 3467999999999999999999999999999986 6655 399999999999999999999973 34777
Q ss_pred EcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 209 ~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
+++++. .| .+.+++.+......... .. ..++|++|||++.+... +.+ .|..+
T Consensus 82 ~~~~~~-----------~~------~~~ir~~i~~~~~~~~~---~~---~~~~viiiDe~~~l~~~-~~~----~L~~~ 133 (340)
T 1sxj_C 82 LNASDD-----------RG------IDVVRNQIKDFASTRQI---FS---KGFKLIILDEADAMTNA-AQN----ALRRV 133 (340)
T ss_dssp ECTTSC-----------CS------HHHHHTHHHHHHHBCCS---SS---CSCEEEEETTGGGSCHH-HHH----HHHHH
T ss_pred EcCccc-----------cc------HHHHHHHHHHHHhhccc---CC---CCceEEEEeCCCCCCHH-HHH----HHHHH
Confidence 777651 11 22333333332211110 11 12579999999988643 223 34455
Q ss_pred HhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 289 VRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 289 ~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
++... ...++++++. ..+.++.++ + ||..+.|.+++..++.++|..++..+++.+++++++.|+..
T Consensus 134 le~~~~~~~~il~~n~--------~~~i~~~i~---s--R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~ 200 (340)
T 1sxj_C 134 IERYTKNTRFCVLANY--------AHKLTPALL---S--QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIEL 200 (340)
T ss_dssp HHHTTTTEEEEEEESC--------GGGSCHHHH---T--TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHH
T ss_pred HhcCCCCeEEEEEecC--------ccccchhHH---h--hceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55432 2244444431 122333333 3 59999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcC
Q 005987 368 SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~~ 385 (666)
++||+|.|++.||.++..
T Consensus 201 s~G~~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 201 SNGDMRRVLNVLQSCKAT 218 (340)
T ss_dssp HTTCHHHHHHHTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=1.3e-20 Score=198.28 Aligned_cols=287 Identities=18% Similarity=0.276 Sum_probs=186.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC-----CcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg-----~~viE~n 210 (666)
+.+|++||+|.++++++|+++.++.+..|+.. ++.+ ++||+||||+|||++|+++|+++. ..+++++
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~--~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT------GSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH------TCCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc------CCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 57899999999999999999999999999986 4444 599999999999999999999973 3467777
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~ 290 (666)
+++... .+.+...+........+ . ...+.+|+|||++.+... . ++.|..+++
T Consensus 84 ~~~~~~-----------------~~~~~~~~~~~~~~~~~----~--~~~~~vliiDe~~~l~~~-~----~~~L~~~le 135 (327)
T 1iqp_A 84 ASDERG-----------------INVIREKVKEFARTKPI----G--GASFKIIFLDEADALTQD-A----QQALRRTME 135 (327)
T ss_dssp TTCHHH-----------------HHTTHHHHHHHHHSCCG----G--GCSCEEEEEETGGGSCHH-H----HHHHHHHHH
T ss_pred ccccCc-----------------hHHHHHHHHHHHhhCCc----C--CCCCeEEEEeCCCcCCHH-H----HHHHHHHHH
Confidence 665211 01111122221111110 0 023579999999988543 2 234555555
Q ss_pred cCCCce-EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 291 STHIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 291 ~~~~Pi-ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
.....+ ++++++. ..+.++.+.+ ||..+.|.|++.+++.++|..++..+++.+++++++.|+..++
T Consensus 136 ~~~~~~~~i~~~~~--------~~~l~~~l~s-----r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 202 (327)
T 1iqp_A 136 MFSSNVRFILSCNY--------SSKIIEPIQS-----RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE 202 (327)
T ss_dssp HTTTTEEEEEEESC--------GGGSCHHHHH-----TEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHT
T ss_pred hcCCCCeEEEEeCC--------ccccCHHHHh-----hCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCC
Confidence 433223 3333321 1122333332 5889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccch
Q 005987 370 GDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAF 449 (666)
Q Consensus 370 GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~ 449 (666)
||+|.+++.|+.++........ +.+....+.-...++|..+..++.... ..
T Consensus 203 g~~r~~~~~l~~~~~~~~~i~~------------------~~v~~~~~~~~~~~i~~l~~~~~~~~~-~~---------- 253 (327)
T 1iqp_A 203 GDMRRAINILQAAAALDKKITD------------------ENVFMVASRARPEDIREMMLLALKGNF-LK---------- 253 (327)
T ss_dssp TCHHHHHHHHHHHHTTCSEECH------------------HHHHHHTTCCCHHHHHHHHHHHHHTCH-HH----------
T ss_pred CCHHHHHHHHHHHHhcCCCCCH------------------HHHHHHHCCCCHHHHHHHHHHHHcCCH-HH----------
Confidence 9999999999988754321000 000111122223456666665555321 00
Q ss_pred hhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCC-CCCcchHHHHHHHHHHhhHhhhccc
Q 005987 450 VVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLD-FISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 450 ~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~-f~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
..+ .-.+++...+.++..++..|...+.. .++ .+....+++.+..+|.-+.
T Consensus 254 -~~~----------~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~---~~~l~~~~~~l~~~~~~lk 305 (327)
T 1iqp_A 254 -ARE----------KLREILLKQGLSGEDVLVQMHKEVFNLPIE---EPKKVLLADKIGEYNFRLV 305 (327)
T ss_dssp -HHH----------HHHHHHHHHCCCHHHHHHHHHHHGGGSSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred -HHH----------HHHHHHHHcCCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHH
Confidence 000 01123323466777777777777665 233 5777888999999999775
No 6
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.87 E-value=2.7e-21 Score=202.81 Aligned_cols=287 Identities=17% Similarity=0.309 Sum_probs=185.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~n 210 (666)
..+|++||+|+++++++|++..++.+..++.. +..+ ++||+||||+|||++|+++|+++ +..+++++
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------KNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT------TCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC------CCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 46899999999999999999999999888764 4444 49999999999999999999997 34577888
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~ 290 (666)
+++. .|.. .+...+........+ . ...+.||+|||++.+... .++.|..+++
T Consensus 76 ~~~~-----------~~~~------~~~~~~~~~~~~~~~----~--~~~~~vliiDe~~~l~~~-----~~~~L~~~le 127 (319)
T 2chq_A 76 ASDE-----------RGID------VVRHKIKEFARTAPI----G--GAPFKIIFLDEADALTAD-----AQAALRRTME 127 (319)
T ss_dssp TTST-----------TCTT------TSSHHHHHHHHSCCS----S--SCCCEEEEEETGGGSCHH-----HHHTTGGGTS
T ss_pred Cccc-----------cChH------HHHHHHHHHHhcCCC----C--CCCceEEEEeCCCcCCHH-----HHHHHHHHHH
Confidence 7652 1211 111112222111111 1 124679999999987542 2334555555
Q ss_pred cCCCceEEE-EecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 291 STHIPTAVV-LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 291 ~~~~PiViI-it~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
.....+++| +++. ..+..+.+. + ||..|.|.+++.+++.++|..++..+++.+++++++.|+..++
T Consensus 128 ~~~~~~~~i~~~~~--------~~~l~~~l~---s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 194 (319)
T 2chq_A 128 MYSKSCRFILSCNY--------VSRIIEPIQ---S--RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG 194 (319)
T ss_dssp SSSSSEEEEEEESC--------GGGSCHHHH---T--TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT
T ss_pred hcCCCCeEEEEeCC--------hhhcchHHH---h--hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 433223333 3331 112223332 2 5889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCcccccccCCCCCCCccccCCCCCcccccCCccccchHHHHhHHhhCCCCCCccccccccch
Q 005987 370 GDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAF 449 (666)
Q Consensus 370 GDIR~AIn~LQf~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~RD~~l~lFhalGkil~~Kr~~~~~~~~~~~~~ 449 (666)
||+|.+++.||.++........ +.+..+.+.....++|+.+..++..... .
T Consensus 195 G~~r~~~~~l~~~~~~~~~i~~------------------~~v~~~~~~~~~~~~~~l~~~~~~~~~~--~--------- 245 (319)
T 2chq_A 195 GDFRKAINALQGAAAIGEVVDA------------------DTIYQITATARPEEMTELIQTALKGNFM--E--------- 245 (319)
T ss_dssp TCHHHHHHHHHHHHHSSSCBCH------------------HHHHHHTTCCCHHHHHHHHHHHHHTCHH--H---------
T ss_pred CCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHHCCCCHHHHHHHHHHHHhCCHH--H---------
Confidence 9999999999998864221100 0011222333344677777777753210 0
Q ss_pred hhhhccccCCCCCCChHHHHHhcCCChhHHHHHHHhhcCCC-CCcchHHHHHHHHHHhhHhhhccc
Q 005987 450 VVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENFLDF-ISEDAIDDAWAVASYLSDADLLLA 514 (666)
Q Consensus 450 ~~~~~~~r~pl~~~~pE~vl~~~~~~~~~~~~~LhENy~~f-~~d~~i~~~~~~~d~LS~aD~l~~ 514 (666)
..+ .-.+++...+.++..++..|...+..+ ++ .+...++++.+..+|.-+.
T Consensus 246 -a~~----------~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~---~~~l~~~~~~l~~~~~~lk 297 (319)
T 2chq_A 246 -ARE----------LLDRLMVEYGMSGEDIVAQLFREIISMPIK---DSLKVQLIDKLGEVDFRLT 297 (319)
T ss_dssp -HHH----------HHHHHHHHSCCCHHHHHHHHHHHHHTSCSC---TTHHHHHHHHHHHHHHHHH
T ss_pred -HHH----------HHHHHHHHcCCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHH
Confidence 000 011233324556666766677666552 33 4566777889999998765
No 7
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.86 E-value=3.5e-21 Score=205.29 Aligned_cols=207 Identities=21% Similarity=0.330 Sum_probs=142.0
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC------CcEE
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG------ARLY 207 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg------~~vi 207 (666)
....+|++||+|+++++++|+++.++.+..++.. +..+ ++||+||||||||++++++|++++ ..++
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~------~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS------ANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC------TTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc------CCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 3467999999999999999999999999988865 4444 499999999999999999999974 4678
Q ss_pred EEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCC-----CCCCCCceEEEEeCCCCCcchhHHHHHH
Q 005987 208 EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI-----PGESKSSAILLIDDLPVTNGRTAFERLR 282 (666)
Q Consensus 208 E~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~-----~~~~~~~~IIlIDEid~l~~~~~~~~l~ 282 (666)
++++++.. +. ..+.+.+....... ..... ......+.||+|||++.+... . +
T Consensus 94 ~~~~~~~~-----------~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-~----~ 150 (353)
T 1sxj_D 94 ELNASDER-----------GI------SIVREKVKNFARLT-VSKPSKHDLENYPCPPYKIIILDEADSMTAD-A----Q 150 (353)
T ss_dssp EECSSSCC-----------CH------HHHTTHHHHHHHSC-CCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-H----H
T ss_pred EEcccccc-----------ch------HHHHHHHHHHhhhc-ccccchhhcccCCCCCceEEEEECCCccCHH-H----H
Confidence 88876521 11 11111111111110 00000 000123579999999988643 2 2
Q ss_pred HHHHHHHhcCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 283 QCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 283 ~~L~~l~~~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
+.|..+++.... ..++++++. ..+.++.+++ ||..+.|.+++.+++.++|..++..+++.++++++
T Consensus 151 ~~Ll~~le~~~~~~~~il~~~~--------~~~l~~~l~s-----R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l 217 (353)
T 1sxj_D 151 SALRRTMETYSGVTRFCLICNY--------VTRIIDPLAS-----QCSKFRFKALDASNAIDRLRFISEQENVKCDDGVL 217 (353)
T ss_dssp HHHHHHHHHTTTTEEEEEEESC--------GGGSCHHHHH-----HSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHhcCCCceEEEEeCc--------hhhCcchhhc-----cCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334445554332 234444431 1223333333 47899999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhc
Q 005987 362 DLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
+.|+..++||+|.+++.|+.++.
T Consensus 218 ~~l~~~~~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 218 ERILDISAGDLRRGITLLQSASK 240 (353)
T ss_dssp HHHHHHTSSCHHHHHHHHHHTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.85 E-value=3.5e-20 Score=194.73 Aligned_cols=201 Identities=19% Similarity=0.364 Sum_probs=146.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~n 210 (666)
..+|++||+|.++++++|++..++.+..|++. ++.+ + ++|+||||+|||++++.+|+++ +..+++++
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~-~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKD------GNMP-H-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS------CCCC-C-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc------CCCC-e-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 57899999999999999999999999999875 5554 3 9999999999999999999997 34577877
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~ 290 (666)
+++.. ..+.+++.+......... .. .++++||+|||++.+... . .+.|..+++
T Consensus 80 ~~~~~-----------------~~~~i~~~~~~~~~~~~~---~~--~~~~~viiiDe~~~l~~~-~----~~~L~~~le 132 (323)
T 1sxj_B 80 ASDDR-----------------GIDVVRNQIKHFAQKKLH---LP--PGKHKIVILDEADSMTAG-A----QQALRRTME 132 (323)
T ss_dssp TTSCC-----------------SHHHHHTHHHHHHHBCCC---CC--TTCCEEEEEESGGGSCHH-H----HHTTHHHHH
T ss_pred Ccccc-----------------ChHHHHHHHHHHHhcccc---CC--CCCceEEEEECcccCCHH-H----HHHHHHHHh
Confidence 66411 123344444443311100 00 123679999999987643 2 233455555
Q ss_pred cCCC-ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 291 STHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 291 ~~~~-PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
.... ..++++++. ..+.++.+. + ||..+.|.+++.+++.++|..++..+++.+++++++.|+..++
T Consensus 133 ~~~~~~~~il~~~~--------~~~l~~~l~---s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 199 (323)
T 1sxj_B 133 LYSNSTRFAFACNQ--------SNKIIEPLQ---S--QCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAE 199 (323)
T ss_dssp HTTTTEEEEEEESC--------GGGSCHHHH---T--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHT
T ss_pred ccCCCceEEEEeCC--------hhhchhHHH---h--hceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4332 233334431 112223333 2 5889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhc
Q 005987 370 GDIRQAITSLQFSSL 384 (666)
Q Consensus 370 GDIR~AIn~LQf~~~ 384 (666)
||+|.|++.|+.++.
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998874
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.7e-19 Score=177.74 Aligned_cols=201 Identities=21% Similarity=0.406 Sum_probs=142.5
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~n 210 (666)
..+|.++|+|.++++++|++..++.+..|+.. +..+ .++|+||||||||++++.+++++ ...++.++
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------KNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHT------TCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhC------CCCC--eEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 46899999999999999999999999999985 3322 59999999999999999999986 34566776
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHh
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~ 290 (666)
++... + ...+...+......... ....+.+|+|||++.+... ..+.|..+++
T Consensus 76 ~~~~~-----------~------~~~~~~~~~~~~~~~~~------~~~~~~vliiDe~~~l~~~-----~~~~l~~~l~ 127 (226)
T 2chg_A 76 ASDER-----------G------IDVVRHKIKEFARTAPI------GGAPFKIIFLDEADALTAD-----AQAALRRTME 127 (226)
T ss_dssp TTCTT-----------C------HHHHHHHHHHHHTSCCS------TTCSCEEEEEETGGGSCHH-----HHHHHHHHHH
T ss_pred ccccc-----------C------hHHHHHHHHHHhcccCC------CccCceEEEEeChhhcCHH-----HHHHHHHHHH
Confidence 54311 1 11222222222211100 1124679999999987543 1223444454
Q ss_pred cCCCc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 291 STHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 291 ~~~~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
..... .++++++.. .... ..+.+ |+..+.|.+++.+++.++|.+++..+++.+++++++.|+..++
T Consensus 128 ~~~~~~~~i~~~~~~--------~~~~---~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 194 (226)
T 2chg_A 128 MYSKSCRFILSCNYV--------SRII---EPIQS--RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG 194 (226)
T ss_dssp HTTTTEEEEEEESCG--------GGSC---HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHT
T ss_pred hcCCCCeEEEEeCCh--------hhcC---HHHHH--hCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 43322 333333311 1111 22222 4779999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcC
Q 005987 370 GDIRQAITSLQFSSLK 385 (666)
Q Consensus 370 GDIR~AIn~LQf~~~~ 385 (666)
||+|.+++.|+.++..
T Consensus 195 g~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 195 GDFRKAINALQGAAAI 210 (226)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998864
No 10
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=6.4e-20 Score=202.46 Aligned_cols=199 Identities=21% Similarity=0.302 Sum_probs=146.0
Q ss_pred CCccccccCCCCccccccCHHHH---HHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKV---EEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i---~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
..+|.++|+|+++++++|++..+ ..+..+++. ++. +.+||+|||||||||+|+++|+.++..++++++.
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~------~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA------GHL--HSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH------TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc------CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 36899999999999999999999 788888876 444 4799999999999999999999999999999875
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~ 292 (666)
. .| .+.++..+..+..... ...+.||||||++.+... .++.|+..++.+
T Consensus 85 ~------------~~------~~~ir~~~~~a~~~~~--------~~~~~iLfIDEI~~l~~~-----~q~~LL~~le~~ 133 (447)
T 3pvs_A 85 T------------SG------VKEIREAIERARQNRN--------AGRRTILFVDEVHRFNKS-----QQDAFLPHIEDG 133 (447)
T ss_dssp T------------CC------HHHHHHHHHHHHHHHH--------TTCCEEEEEETTTCC-----------CCHHHHHTT
T ss_pred c------------CC------HHHHHHHHHHHHHhhh--------cCCCcEEEEeChhhhCHH-----HHHHHHHHHhcC
Confidence 3 11 2344445554433221 013579999999988543 233456666665
Q ss_pred CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHH
Q 005987 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ-------EQYSLSTEQIDLVA 365 (666)
Q Consensus 293 ~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~-------e~i~v~~~~l~~Ia 365 (666)
.. ++|.+++.+. .... ...+++ ||.++.|.+++.+++..+|.+++.. +++.+++++++.|+
T Consensus 134 ~v-~lI~att~n~------~~~l---~~aL~s--R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~ 201 (447)
T 3pvs_A 134 TI-TFIGATTENP------SFEL---NSALLS--RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIA 201 (447)
T ss_dssp SC-EEEEEESSCG------GGSS---CHHHHT--TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHH
T ss_pred ce-EEEecCCCCc------cccc---CHHHhC--ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHH
Confidence 42 3333332221 1111 133333 5899999999999999999999987 55779999999999
Q ss_pred HHcCCcHHHHHHHHHHHhcC
Q 005987 366 QASGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 366 ~~s~GDIR~AIn~LQf~~~~ 385 (666)
..++||+|.++|.|+.++..
T Consensus 202 ~~~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 202 ELVNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHCSCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 11
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.83 E-value=1.9e-19 Score=193.32 Aligned_cols=217 Identities=18% Similarity=0.259 Sum_probs=145.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC--C
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP--T 213 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas--d 213 (666)
-.+|++||+|+++++++|++..++.+..++.. ++.+ +.+||+||||+|||++++++|+.+++.......+ .
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~------~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSL------GRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHH------TCCC-SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHh------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 36799999999999999999999999999986 4544 5799999999999999999999986532110000 0
Q ss_pred chhhhhhhhcccCCc---c--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 214 PTIWQEYMHNCKTGL---E--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~---~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
............... . .....+.++.+++.+.... ....++||+|||++.+... ..+.|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~vliiDe~~~l~~~-----~~~~Ll~~ 142 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--------ARGRFKVYLIDEVHMLSRH-----SFNALLKT 142 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC--------SSSSSEEEEEECGGGSCHH-----HHHHHHHH
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcc--------ccCCeEEEEEECcchhcHH-----HHHHHHHH
Confidence 000000000000000 0 0112234555555543211 1124679999999987542 22345566
Q ss_pred HhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 005987 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (666)
Q Consensus 289 ~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s 368 (666)
++.....+++|++.... .+... .+.+ ||..+.|.+++.+++.++|..++..+++.+++++++.|+..+
T Consensus 143 le~~~~~~~~Il~~~~~-------~~l~~---~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDP-------QKLPV---TILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHSCCSSEEEEEEESCG-------GGSCH---HHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HhcCCCceEEEEEeCCh-------HhCcH---HHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 66544344444443211 12222 2332 589999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhc
Q 005987 369 GGDIRQAITSLQFSSL 384 (666)
Q Consensus 369 ~GDIR~AIn~LQf~~~ 384 (666)
+||+|.+++.|+.+..
T Consensus 211 ~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 211 EGSLRDALSLTDQAIA 226 (373)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999977653
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.83 E-value=3.2e-19 Score=177.82 Aligned_cols=217 Identities=17% Similarity=0.246 Sum_probs=141.8
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC--C
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP--T 213 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas--d 213 (666)
..+|.++|+|..+++++|++..++.+..|+.. ++.+ +.++|+||||+|||++++.++++++........+ .
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSL------GRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHH------TCCC-SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 57899999999999999999999999999986 4433 5899999999999999999999985432111100 0
Q ss_pred chhhhhhhhcccCC---cc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHH
Q 005987 214 PTIWQEYMHNCKTG---LE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (666)
Q Consensus 214 ~~~~~e~l~~~~~g---~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l 288 (666)
.............. .. .......+..++..+... .....+.+|+|||++.+... ..+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~vlviDe~~~l~~~-----~~~~l~~~ 149 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--------PARGRFKVYLIDEVHMLSRH-----SFNALLKT 149 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS--------CSSSSSEEEEEETGGGSCHH-----HHHHHHHH
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhc--------hhcCCceEEEEECcccccHH-----HHHHHHHH
Confidence 00000000000000 00 011223344443322110 01234679999999987532 22334555
Q ss_pred HhcCCCc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 289 VRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 289 ~~~~~~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
++..... .++++++.. .... ..+++ ++..|.|++++.+++.+++..++..+++.+++++++.|++.
T Consensus 150 l~~~~~~~~~i~~t~~~--------~~~~---~~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 150 LEEPPEHVKFLLATTDP--------QKLP---VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 216 (250)
T ss_dssp HHSCCTTEEEEEEESCG--------GGSC---HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCCh--------HhCC---HHHHH--HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5544333 334444311 1111 22222 48899999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcC
Q 005987 368 SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~~ 385 (666)
++|++|.+++.++.++..
T Consensus 217 ~~G~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 217 AEGSLRDALSLTDQAIAS 234 (250)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999887653
No 13
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=4e-19 Score=188.79 Aligned_cols=199 Identities=14% Similarity=0.198 Sum_probs=138.6
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
.....|.+||+|.++++++|++..++.+..|+...... +. +...+||+||||||||++|+++|++++..++.++++.
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--~~-~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--NE-CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--TS-CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc--CC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 34678999999999999999999999999999876431 12 2257999999999999999999999999999988653
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~ 293 (666)
. .....+..++.. . ..+.+|+|||++.+... .+..|...++...
T Consensus 91 ~-----------------~~~~~~~~~~~~---~-----------~~~~vl~lDEi~~l~~~-----~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 91 I-----------------EKSGDLAAILTN---L-----------SEGDILFIDEIHRLSPA-----IEEVLYPAMEDYR 134 (338)
T ss_dssp C-----------------CSHHHHHHHHHT---C-----------CTTCEEEEETGGGCCHH-----HHHHHHHHHHTSC
T ss_pred c-----------------cchhHHHHHHHh---c-----------cCCCEEEEechhhcCHH-----HHHHHHHHHHhcc
Confidence 1 112233333322 1 13469999999987532 2333444444432
Q ss_pred -----------------Cc-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCC
Q 005987 294 -----------------IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQY 354 (666)
Q Consensus 294 -----------------~P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i 354 (666)
.| +++|++. +.. .... .++++ |+ ..|.|.+++.+++..+|.+.+...++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~at-n~~------~~l~---~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~ 202 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGAT-TRA------GMLS---NPLRD--RFGMQFRLEFYKDSELALILQKAALKLNK 202 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEE-SCG------GGSC---HHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred chhhcccCccccceecCCCCeEEEEeC-CCc------cccC---HHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCC
Confidence 12 3333332 221 1111 22333 35 78999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005987 355 SLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 355 ~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
.+++++++.|+..+.|++|.+++.|+.+.
T Consensus 203 ~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 203 TCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp EECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 14
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.77 E-value=6.4e-18 Score=181.39 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=147.5
Q ss_pred CCccccccCCCC-ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC--cEEEEcCC
Q 005987 136 QQLWAEKYKPRS-LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTP 212 (666)
Q Consensus 136 ~~~W~eKY~P~s-l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~--~viE~nas 212 (666)
...+.++|+|.. +++++|++..++.+..++..... +..+++.+||+||||||||++|+++|++++. .++.++++
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~---~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE---GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999 99999999998886665543322 4444478999999999999999999999975 44455432
Q ss_pred Cch--------hhhhhhhc-------------------------------ccCCccccchhHHHHHHHHHHHh----hcC
Q 005987 213 TPT--------IWQEYMHN-------------------------------CKTGLEYTSKLDEFENFVERIRR----YGS 249 (666)
Q Consensus 213 d~~--------~~~e~l~~-------------------------------~~~g~~~~s~~~~f~~fl~~a~~----~~~ 249 (666)
... ...+.+.. ...|. .......++..+..+.. .+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGD-TGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCc-ccccHHHHHHHHHHHHHHhhhhcc
Confidence 200 00000000 00000 00112233333333221 110
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCC----CccchhhhhhHHHHHHhh
Q 005987 250 TSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKAD----SVDSTAQSFEELQSILVD 325 (666)
Q Consensus 250 l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~----s~d~~~r~l~~L~s~L~r 325 (666)
. ...+.||||||++.+... ..+.|...++....|+++++++....- ..+...... ..+++
T Consensus 186 ~-------~~~~~vl~IDEi~~l~~~-----~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~---~~l~s- 249 (368)
T 3uk6_A 186 A-------EIIPGVLFIDEVHMLDIE-----SFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIP---IDLLD- 249 (368)
T ss_dssp ----------CBCEEEEESGGGSBHH-----HHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCC---HHHHT-
T ss_pred c-------cccCceEEEhhccccChH-----HHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCC---HHHHh-
Confidence 0 012469999999988532 334566777777778877766521100 000011111 23333
Q ss_pred cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhc
Q 005987 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG-GDIRQAITSLQFSSL 384 (666)
Q Consensus 326 ~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~-GDIR~AIn~LQf~~~ 384 (666)
||..|.|+|++.+++.++|.+.+..+++.+++++++.|+..+. ||+|.+++.|+.++.
T Consensus 250 -R~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 250 -RLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp -TEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -hccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999999999999999 999999999988764
No 15
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=178.18 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=144.5
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCC----CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~----g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
...|+++|+|.++++|+|++..++.|..++........ ...+.+.+||+||||||||++|+++|++++..++++++
T Consensus 102 ~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred HhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 34699999999999999999999999999864332110 11223789999999999999999999999999999998
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCL 285 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L 285 (666)
++.. +.........+..++..+... .+.||||||+|.+.... ...+++..|
T Consensus 182 ~~l~-----------~~~~g~~~~~~~~~~~~a~~~------------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 238 (389)
T 3vfd_A 182 ASLT-----------SKYVGEGEKLVRALFAVAREL------------QPSIIFIDQVDSLLCERREGEHDASRRLKTEF 238 (389)
T ss_dssp CCC------------------CHHHHHHHHHHHHHS------------SSEEEEEETGGGGC--------CTHHHHHHHH
T ss_pred HHhh-----------ccccchHHHHHHHHHHHHHhc------------CCeEEEEECchhhcccCCCccchHHHHHHHHH
Confidence 7621 111111223344555555432 25699999999763211 122333333
Q ss_pred HHHHhc----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 005987 286 LLLVRS----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (666)
Q Consensus 286 ~~l~~~----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~ 360 (666)
...+.. ....+++|++. +... .+...+.+ |+ ..|.|..|+.++...+|..++...+..++++.
T Consensus 239 l~~l~~~~~~~~~~v~vI~at-n~~~----------~l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~ 306 (389)
T 3vfd_A 239 LIEFDGVQSAGDDRVLVMGAT-NRPQ----------ELDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE 306 (389)
T ss_dssp HHHHHHHC-----CEEEEEEE-SCGG----------GCCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHH
T ss_pred HHHhhcccccCCCCEEEEEec-CCch----------hcCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 333332 12234444333 2211 12222223 45 57999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh
Q 005987 361 IDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 361 l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
+..|+..+.|+.+.+|+.|.-.+
T Consensus 307 ~~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999888875544
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.8e-17 Score=169.36 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=139.3
Q ss_pred cccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCcEEE
Q 005987 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYE 208 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~viE 208 (666)
.-+-|.|..+ |.++++.++.|..+|...+.. ..+ +.++|+||||||||++++.+++++ .+.+++
T Consensus 12 l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~---~~~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~ 85 (318)
T 3te6_A 12 IRESLQKREL--LKSQVEDFTRIFLPIYDSLMS---SQN-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH 85 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT---TCC-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE
T ss_pred hhhccCCccc--cCCHHHHHHHHHHHHHHHhcC---CCC-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 4455656443 789999999999999988763 223 689999999999999999999999 467899
Q ss_pred EcCCCchhh---hhhhhcccCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 209 WDTPTPTIW---QEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 209 ~nasd~~~~---~e~l~~~~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
+|+...... ...+.....|.. .......+..++..+.+. ...+.||+|||+|.+..+.. +..
T Consensus 86 INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~----------~~~~~ii~lDE~d~l~~q~~---L~~ 152 (318)
T 3te6_A 86 IDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKA----------KKRKTLILIQNPENLLSEKI---LQY 152 (318)
T ss_dssp EETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGG----------GSCEEEEEEECCSSSCCTHH---HHH
T ss_pred EeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhc----------cCCceEEEEecHHHhhcchH---HHH
Confidence 998653211 111111112221 122334455555443111 12467999999999873322 212
Q ss_pred HHHHHHhcCCCceEEE-EecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhC---------
Q 005987 284 CLLLLVRSTHIPTAVV-LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ--------- 353 (666)
Q Consensus 284 ~L~~l~~~~~~PiViI-it~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~--------- 353 (666)
|..+.......+++| ++++.. ...+.+. +.+.+|..+..|.|.|++.+++..+|++.+....
T Consensus 153 -l~~~~~~~~s~~~vI~i~n~~d-----~~~~~L~--~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~ 224 (318)
T 3te6_A 153 -FEKWISSKNSKLSIICVGGHNV-----TIREQIN--IMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVND 224 (318)
T ss_dssp -HHHHHHCSSCCEEEEEECCSSC-----CCHHHHH--TCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECT
T ss_pred -HHhcccccCCcEEEEEEecCcc-----cchhhcc--hhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 222222222233333 333211 1112221 1222344567899999999999999999987631
Q ss_pred --------------------------CCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhc
Q 005987 354 --------------------------YSLSTEQIDLVAQ---ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 354 --------------------------i~v~~~~l~~Ia~---~s~GDIR~AIn~LQf~~~ 384 (666)
+.+++++|+.+|. ...||+|.||+.|..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 225 KKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp TCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 1379999999998 578999999999988764
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.73 E-value=4.1e-17 Score=171.89 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=136.4
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhh
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~ 217 (666)
+|.+||+|.++++++|++..++.+..++..+... +.. .+.+||+||||||||++|++++++++..++.++++...
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--~~~-~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-- 75 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR--KEP-LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-- 75 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--CSC-CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC--
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc--CCC-CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC--
Confidence 4678999999999999999999999999864321 122 25799999999999999999999999999888876411
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC----
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---- 293 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~---- 293 (666)
....+...+. .. ...+.+|+|||++.+... ... .|..+++...
T Consensus 76 ---------------~~~~l~~~l~---~~----------~~~~~~l~lDEi~~l~~~-~~~----~L~~~l~~~~~~~v 122 (324)
T 1hqc_A 76 ---------------KPGDLAAILA---NS----------LEEGDILFIDEIHRLSRQ-AEE----HLYPAMEDFVMDIV 122 (324)
T ss_dssp ---------------SHHHHHHHHT---TT----------CCTTCEEEETTTTSCCHH-HHH----HHHHHHHHSEEEEC
T ss_pred ---------------ChHHHHHHHH---Hh----------ccCCCEEEEECCcccccc-hHH----HHHHHHHhhhhHHh
Confidence 1112222221 10 013469999999988642 222 2333333321
Q ss_pred --------------CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 294 --------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 294 --------------~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
.++++|++. +.... ..+.| +. |+ ..+.|.+++.+++..+|.+.+...++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~t-~~~~~------~~~~l---~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~ 190 (324)
T 1hqc_A 123 IGQGPAARTIRLELPRFTLIGAT-TRPGL------ITAPL---LS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITE 190 (324)
T ss_dssp CSSSSSCCCEEEECCCCEEEEEE-SCCSS------CSCST---TT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCH
T ss_pred ccccccccccccCCCCEEEEEeC-CCccc------CCHHH---Hh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 123333332 21111 11112 22 45 689999999999999999999998999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 359 EQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 359 ~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
++++.|+..++|++|.+.+.++.+..
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 18
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.73 E-value=1.5e-16 Score=176.27 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=82.7
Q ss_pred eEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCC-----CCCccchhhhhhHHHHHHhhcCeeEEEeCCC
Q 005987 262 AILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGK-----ADSVDSTAQSFEELQSILVDAGARKVALNPI 336 (666)
Q Consensus 262 ~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~-----~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~ 336 (666)
+|++|||++.+.. ...++|+..++....+++|++++... ...........+ .+++ ||..++|.++
T Consensus 297 ~VliIDEa~~l~~-----~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~---~i~s--R~~~~~~~~~ 366 (456)
T 2c9o_A 297 GVLFVDEVHMLDI-----ECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPL---DLLD--RVMIIRTMLY 366 (456)
T ss_dssp CEEEEESGGGCBH-----HHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCH---HHHT--TEEEEECCCC
T ss_pred eEEEEechhhcCH-----HHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCCh---hHHh--hcceeeCCCC
Confidence 5999999998853 23445677777777776555653210 000011122222 3333 5999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHH
Q 005987 337 TNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQFS 382 (666)
Q Consensus 337 s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s-~GDIR~AIn~LQf~ 382 (666)
+.+++.++|++++..+++.++++++..|+..+ .|++|.|++.|+.+
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 413 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999876
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=3e-16 Score=163.54 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=139.5
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCC----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
.|+++|+|.++++++|++..++.|..++....... ....+.+.+||+||||||||++|+++|++++..++.+++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 58999999999999999999999999886432210 01122378999999999999999999999999999999875
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH------HHHHHHHHHH
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA------FERLRQCLLL 287 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~------~~~l~~~L~~ 287 (666)
.. +..........+.++..+... .+.+|+|||++.+..... ..++...|..
T Consensus 90 l~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 90 LT-----------SKYVGDGEKLVRALFAVARHM------------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLV 146 (297)
T ss_dssp TS-----------SSSCSCHHHHHHHHHHHHHHT------------CSEEEEEETGGGTSBCC-----CCSHHHHHHHHH
T ss_pred Hh-----------hcccchHHHHHHHHHHHHHHc------------CCcEEEeccHHHhccccccCcchHHHHHHHHHHH
Confidence 21 111112223344455554322 357999999997643211 1223333333
Q ss_pred HHhcCC-----CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 288 LVRSTH-----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 288 l~~~~~-----~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
.++... ..+++|++. +... .+. ..+++| ....+.|..|+.++...+|...+...+..++++.++
T Consensus 147 ~l~~~~~~~~~~~v~vi~~t-n~~~-------~l~--~~l~~R-~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 215 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAAT-NRPQ-------ELD--EAALRR-FTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALR 215 (297)
T ss_dssp HHHHCC------CEEEEEEE-SCGG-------GBC--HHHHHH-CCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHH
T ss_pred HHhcccccCCCCcEEEEeec-CChh-------hCC--HHHHhh-CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 333221 123343332 2211 111 222333 236789999999999999999999888889999999
Q ss_pred HHHHHcCCcHHHHHHHH
Q 005987 363 LVAQASGGDIRQAITSL 379 (666)
Q Consensus 363 ~Ia~~s~GDIR~AIn~L 379 (666)
.|+..+.|..+.+|..|
T Consensus 216 ~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 216 RLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HHHHHTTTCCHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHH
Confidence 99999999888777655
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.72 E-value=1e-16 Score=169.57 Aligned_cols=212 Identities=13% Similarity=0.130 Sum_probs=142.4
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcC----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
..|+++|.+.++++|+|++..++.|+.++...... ..+..+.+.+||+||||||||++|+++|++++..++.++++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 46899999999999999999999999988532211 11233347899999999999999999999999999999865
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh------HHHHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLL 286 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~------~~~~l~~~L~ 286 (666)
+. .+.........+..++..+... .+.||+|||+|.+.... ...++...+.
T Consensus 86 ~l-----------~~~~~g~~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 142 (322)
T 3eie_A 86 DL-----------VSKWMGESEKLVKQLFAMAREN------------KPSIIFIDQVDALTGTRGEGESEASRRIKTELL 142 (322)
T ss_dssp HH-----------HTTTGGGHHHHHHHHHHHHHHT------------SSEEEEEECGGGGSCC------CCTHHHHHHHH
T ss_pred HH-----------hhcccchHHHHHHHHHHHHHhc------------CCeEEEechhhhhhccCCCCcchHHHHHHHHHH
Confidence 31 0111122233455555555432 35799999999775421 1123343344
Q ss_pred HHHhc---CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 287 LLVRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 287 ~l~~~---~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
..+.. ....+++|++. +... . |...+.++....|.|..|+.++..++|+..+...+..+++..++.
T Consensus 143 ~~l~~~~~~~~~v~vi~at-n~~~-------~---ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~ 211 (322)
T 3eie_A 143 VQMNGVGNDSQGVLVLGAT-NIPW-------Q---LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRT 211 (322)
T ss_dssp HHHGGGGTSCCCEEEEEEE-SCGG-------G---SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred HHhccccccCCceEEEEec-CChh-------h---CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 44432 22334444333 2221 1 222222212467899999999999999999988888889999999
Q ss_pred HHHHcCC----cHHHHHHHHHHH
Q 005987 364 VAQASGG----DIRQAITSLQFS 382 (666)
Q Consensus 364 Ia~~s~G----DIR~AIn~LQf~ 382 (666)
|+..+.| ||+.+++...+.
T Consensus 212 la~~t~g~sg~di~~l~~~a~~~ 234 (322)
T 3eie_A 212 LGAMTEGYSGSDIAVVVKDALMQ 234 (322)
T ss_dssp HHHTTTTCCHHHHHHHHHHHTTH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999887 777666544333
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.70 E-value=2e-16 Score=169.63 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=137.2
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
...|+.++.|.++++|+|++..++.|+.++...+... .+..+.+.+||+||||||||++|+++|++++..++.+++
T Consensus 38 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 38 SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp ---------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 4568899999999999999999999998875322110 122333689999999999999999999999999999886
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCL 285 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L 285 (666)
++. ..... ......+..++..+... .+.||||||+|.+... ....++...|
T Consensus 118 ~~l-------~~~~~----g~~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 174 (355)
T 2qp9_X 118 SDL-------VSKWM----GESEKLVKQLFAMAREN------------KPSIIFIDQVDALTGTRGEGESEASRRIKTEL 174 (355)
T ss_dssp HHH-------HSCC-------CHHHHHHHHHHHHHT------------SSEEEEEECGGGGTC------CTHHHHHHHHH
T ss_pred HHH-------hhhhc----chHHHHHHHHHHHHHHc------------CCeEEEEechHhhcccCCCCcchHHHHHHHHH
Confidence 531 01011 11223445555555432 3579999999987532 1223344444
Q ss_pred HHHHhcC---CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 286 LLLVRST---HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 286 ~~l~~~~---~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
+..+... ...+++|++. +... . |...+.+ |+ ..|.|.+|+.++...+|+..+...+..+++..+
T Consensus 175 l~~l~~~~~~~~~v~vI~at-n~~~-------~---ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l 242 (355)
T 2qp9_X 175 LVQMNGVGNDSQGVLVLGAT-NIPW-------Q---LDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY 242 (355)
T ss_dssp HHHHHHCC---CCEEEEEEE-SCGG-------G---SCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred HHHhhcccccCCCeEEEeec-CCcc-------c---CCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 4444422 2234444332 2221 1 2222222 34 678999999999999999999888777899999
Q ss_pred HHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 362 DLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
+.|+..+.| ||+.+++...+.+.
T Consensus 243 ~~la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 243 RTLGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999988 88888877666654
No 22
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.3e-16 Score=165.91 Aligned_cols=213 Identities=16% Similarity=0.211 Sum_probs=141.9
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+-+++-...+++|+.|.++.+++|++.+.--+..+ -|..+++.+|||||||||||++|+++|++++..++.++.
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 445566666899999999999999998876322211 144455889999999999999999999999999999988
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~ 282 (666)
++. ....+......++.++..++.. .|+||+|||+|.+... ....+..
T Consensus 216 s~l-----------~sk~vGese~~vr~lF~~Ar~~------------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l 272 (405)
T 4b4t_J 216 AEL-----------VQKYIGEGSRMVRELFVMAREH------------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTM 272 (405)
T ss_dssp GGG-----------SCSSTTHHHHHHHHHHHHHHHT------------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHH
T ss_pred HHh-----------hccccchHHHHHHHHHHHHHHh------------CCceEeeecchhhccCCCCCCCCCcHHHHHHH
Confidence 751 1222234455677788877654 3789999999976321 1122233
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
..|+..++. ....++ ++.+++.++..| +.|.|+ .-..|.|..|+.....++|+..+....+. ++
T Consensus 273 ~~lL~~lDg~~~~~~V~-vIaATNrpd~LD----------pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~d 340 (405)
T 4b4t_J 273 LELLNQLDGFETSKNIK-IIMATNRLDILD----------PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RG 340 (405)
T ss_dssp HHHHHHHHTTTCCCCEE-EEEEESCSSSSC----------HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SS
T ss_pred HHHHHhhhccCCCCCeE-EEeccCChhhCC----------HhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-cc
Confidence 334433432 222343 444444444332 233332 24589999999999999998887665432 12
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 359 ~~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
-.++.||..+.| ||+..++.--+.|.
T Consensus 341 vdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 341 INLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 237888888665 99988876655554
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.69 E-value=5.7e-16 Score=155.03 Aligned_cols=201 Identities=11% Similarity=0.107 Sum_probs=136.5
Q ss_pred CCccccccCC-CCcccccc---CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEE
Q 005987 136 QQLWAEKYKP-RSLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYE 208 (666)
Q Consensus 136 ~~~W~eKY~P-~sl~eLvg---~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE 208 (666)
..+|..+|+| .+++++++ ++..++.+..++.. + ..+.++|+||||||||++++++|+++. ..++.
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~ 85 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASG------D--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFY 85 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT------C--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhC------C--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4579999999 89999996 35777777777653 2 126899999999999999999999874 66777
Q ss_pred EcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-HHHHHHHHHHH
Q 005987 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLL 287 (666)
Q Consensus 209 ~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-~~~~l~~~L~~ 287 (666)
++..+... . +...+. .+ ..+.+|+|||++.+.... ....+...+..
T Consensus 86 ~~~~~~~~----------~---------~~~~~~---~~-----------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 86 IPLGIHAS----------I---------STALLE---GL-----------EQFDLICIDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp EEGGGGGG----------S---------CGGGGT---TG-----------GGSSEEEEETGGGGTTCHHHHHHHHHHHHH
T ss_pred EEHHHHHH----------H---------HHHHHH---hc-----------cCCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 76543100 0 000010 11 124699999999875432 12334444444
Q ss_pred HHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005987 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (666)
Q Consensus 288 l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~ 367 (666)
....+. +.++++++..... . ......+.+.+. .+..+.|.+++.+++.++|...+...++.+++++++.|+..
T Consensus 133 ~~~~~~-~~ii~~~~~~~~~-~---~~~~~~l~~r~~--~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 205 (242)
T 3bos_A 133 VAEQKR-GSLIVSASASPME-A---GFVLPDLVSRMH--WGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNR 205 (242)
T ss_dssp HHHHCS-CEEEEEESSCTTT-T---TCCCHHHHHHHH--HSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHcCC-CeEEEEcCCCHHH-H---HHhhhhhhhHhh--cCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444432 3244444432211 0 111133333221 12789999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhc
Q 005987 368 SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 368 s~GDIR~AIn~LQf~~~ 384 (666)
++||+|.+++.|+.++.
T Consensus 206 ~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 206 MARDLRTLFDVLDRLDK 222 (242)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999987764
No 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=1.5e-15 Score=163.40 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=139.0
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
..+|..+|+| ++++|+++.++.+..++..+.....+.. +.++|+||||+||||+++.+++++ ++.++++++
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~--~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHY--PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSC--CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCC--CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 4578999999 6789999999999999998765322111 389999999999999999999999 678899997
Q ss_pred CCchhh----hhhhhcccCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHH
Q 005987 212 PTPTIW----QEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (666)
Q Consensus 212 sd~~~~----~e~l~~~~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L 285 (666)
+..... ...+........ .......+..+...+... +.+.||+|||++.+. ..... .|
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlilDE~~~l~-~~~~~----~L 145 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER-----------DLYMFLVLDDAFNLA-PDILS----TF 145 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT-----------TCCEEEEEETGGGSC-HHHHH----HH
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc-----------CCeEEEEEECccccc-hHHHH----HH
Confidence 653321 111111100000 001111122222222111 236799999999883 22223 33
Q ss_pred HHHHhc------CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CCCCC
Q 005987 286 LLLVRS------THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLS 357 (666)
Q Consensus 286 ~~l~~~------~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i~v~ 357 (666)
..++.. .+.++| ++++.. +........+. ++.....|.|+|++.+++.++|...+... ...++
T Consensus 146 ~~~~~~~~~~~~~~~~iI-~~~~~~-----~~~~~l~~~~~---~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~ 216 (389)
T 1fnn_A 146 IRLGQEADKLGAFRIALV-IVGHND-----AVLNNLDPSTR---GIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS 216 (389)
T ss_dssp HHHTTCHHHHSSCCEEEE-EEESST-----HHHHTSCHHHH---HHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC
T ss_pred HHHHHhCCCCCcCCEEEE-EEECCc-----hHHHHhCHHhh---hcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence 333322 233333 333211 01111222222 23233479999999999999999998762 24689
Q ss_pred HHHHHHHHHHc---------CCcHHHHHHHHHHHhc
Q 005987 358 TEQIDLVAQAS---------GGDIRQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~~s---------~GDIR~AIn~LQf~~~ 384 (666)
+++++.|+..+ .||+|.+++.|+.++.
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 217 EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999 8999999999988764
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.68 E-value=7.6e-16 Score=165.31 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=136.7
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCC----CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~----g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
.++++|.|.++++|+|++..++.|+.++...+.... ...+.+.+||+||||||||++|+++|++++..++.+++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 378899999999999999999999998874222110 1122378999999999999999999999999999998764
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHH
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLL 287 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~ 287 (666)
. .+.........+..++..+... .+.||||||+|.+... ....+++..++.
T Consensus 153 l-----------~~~~~g~~~~~~~~~~~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~ 209 (357)
T 3d8b_A 153 L-----------TSKWVGEGEKMVRALFAVARCQ------------QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLV 209 (357)
T ss_dssp G-----------CCSSTTHHHHHHHHHHHHHHHT------------CSEEEEEETHHHHTBC------CHHHHHHHHHHH
T ss_pred h-----------hccccchHHHHHHHHHHHHHhc------------CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHH
Confidence 1 1111111223344445444322 3579999999865321 112233333444
Q ss_pred HHhc----CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 005987 288 LVRS----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (666)
Q Consensus 288 l~~~----~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~ 363 (666)
.+.. ....+++|++. +... .+. ..+++| ....+.|..|+.++...+|..++...++.++++.++.
T Consensus 210 ~l~~~~~~~~~~v~vI~at-n~~~-------~l~--~~l~~R-f~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~ 278 (357)
T 3d8b_A 210 QLDGATTSSEDRILVVGAT-NRPQ-------EID--EAARRR-LVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQ 278 (357)
T ss_dssp HHHC----CCCCEEEEEEE-SCGG-------GBC--HHHHTT-CCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHH
T ss_pred HHhcccccCCCCEEEEEec-CChh-------hCC--HHHHhh-CceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 4432 12234444333 2211 111 223332 2357899999999999999999998888899999999
Q ss_pred HHHHcCCcHHHHHHHH
Q 005987 364 VAQASGGDIRQAITSL 379 (666)
Q Consensus 364 Ia~~s~GDIR~AIn~L 379 (666)
|+..+.|-....|+.|
T Consensus 279 la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 279 IVQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHHTTTCCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHH
Confidence 9999988444444443
No 26
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.68 E-value=1.5e-15 Score=161.56 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=131.2
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
+.|+++++|+++++++|++..++.|..+++..... +..+ .+++|+||||+||||+++++|++++..+...+.+..
T Consensus 13 ~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~--~~~~-~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~-- 87 (334)
T 1in4_A 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR--GEVL-DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL-- 87 (334)
T ss_dssp ----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH--TCCC-CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC--
T ss_pred HHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc--CCCC-CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh--
Confidence 46999999999999999999999999888753221 2222 579999999999999999999999987765554321
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC--
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-- 294 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~-- 294 (666)
.....+..++.. . ....|++|||++.+... ..+.|...++....
T Consensus 88 ---------------~~~~~l~~~~~~---~-----------~~~~v~~iDE~~~l~~~-----~~e~L~~~~~~~~~~i 133 (334)
T 1in4_A 88 ---------------VKQGDMAAILTS---L-----------ERGDVLFIDEIHRLNKA-----VEELLYSAIEDFQIDI 133 (334)
T ss_dssp ---------------CSHHHHHHHHHH---C-----------CTTCEEEEETGGGCCHH-----HHHHHHHHHHTSCCCC
T ss_pred ---------------cCHHHHHHHHHH---c-----------cCCCEEEEcchhhcCHH-----HHHHHHHHHHhcccce
Confidence 011122222221 1 12459999999987641 22233333332211
Q ss_pred ----------------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 295 ----------------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 295 ----------------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
++.++. .++.. ......++ + |+ ..+.|.+++.+++.++|++++...++.++
T Consensus 134 ~~~~~~~~~~i~~~l~~~~li~-at~~~------~~Ls~~l~---s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~ 201 (334)
T 1in4_A 134 MIGKGPSAKSIRIDIQPFTLVG-ATTRS------GLLSSPLR---S--RFGIILELDFYTVKELKEIIKRAASLMDVEIE 201 (334)
T ss_dssp ---------------CCCEEEE-EESCG------GGSCHHHH---T--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred eeccCcccccccccCCCeEEEE-ecCCc------ccCCHHHH---H--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 122222 22111 11112222 2 34 46899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Q 005987 358 TEQIDLVAQASGGDIRQAITSLQFS 382 (666)
Q Consensus 358 ~~~l~~Ia~~s~GDIR~AIn~LQf~ 382 (666)
++++..|+..+.||+|.|++.|+.+
T Consensus 202 ~~~~~~ia~~~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 202 DAAAEMIAKRSRGTPRIAIRLTKRV 226 (334)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999999999999999999754
No 27
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=1.9e-16 Score=170.43 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=137.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----------CC
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----------GA 204 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----------g~ 204 (666)
...|..+|.| ++++|+++.++++..++..+.. +..+ +.++|+||||||||++++.+++++ ++
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~---~~~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 82 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVK---NEVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV 82 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHT---TCCC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTC
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHc---CCCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 5679999999 6789999999999999998765 3333 689999999999999999999998 89
Q ss_pred cEEEEcCCCch-h----hhhhhhcccCCccc----cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch
Q 005987 205 RLYEWDTPTPT-I----WQEYMHNCKTGLEY----TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR 275 (666)
Q Consensus 205 ~viE~nasd~~-~----~~e~l~~~~~g~~~----~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~ 275 (666)
.++.+++.... . +...+.. ..|... ......+..+...+. ..+.||+|||++.+...
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~l~~~l~-------------~~~~vlilDEi~~l~~~ 148 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGK-LTGFSVPKHGINLGEYIDKIKNGTR-------------NIRAIIYLDEVDTLVKR 148 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHH-HHCSCCCSSSSCTHHHHHHHHHHHS-------------SSCEEEEEETTHHHHHS
T ss_pred eEEEEECccCCCCHHHHHHHHHHH-hcCCCCCCCCCCHHHHHHHHHHHhc-------------cCCCEEEEECHHHhccC
Confidence 99999865321 1 1111111 001100 001111222222221 11239999999976432
Q ss_pred hHHHHHHHH-HHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH--h
Q 005987 276 TAFERLRQC-LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ--E 352 (666)
Q Consensus 276 ~~~~~l~~~-L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~--e 352 (666)
.. .+. +..+.... .++.+|++.... + ........+ +++ .+..|.|+|++.+++.++|...+.. .
T Consensus 149 ~~----~~~~l~~l~~~~-~~~~iI~~t~~~-~---~~~~l~~~l---~sr-~~~~i~l~~l~~~~~~~il~~~~~~~~~ 215 (384)
T 2qby_B 149 RG----GDIVLYQLLRSD-ANISVIMISNDI-N---VRDYMEPRV---LSS-LGPSVIFKPYDAEQLKFILSKYAEYGLI 215 (384)
T ss_dssp TT----SHHHHHHHHTSS-SCEEEEEECSST-T---TTTTSCHHH---HHT-CCCEEEECCCCHHHHHHHHHHHHHHTSC
T ss_pred CC----CceeHHHHhcCC-cceEEEEEECCC-c---hHhhhCHHH---Hhc-CCCeEEECCCCHHHHHHHHHHHHHhhcc
Confidence 10 122 33333332 223333332111 1 001111222 223 2459999999999999999999875 3
Q ss_pred CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhc
Q 005987 353 QYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (666)
Q Consensus 353 ~i~v~~~~l~~Ia~~s~---GDIR~AIn~LQf~~~ 384 (666)
+..+++++++.|+..++ ||+|.|++.|+.+..
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 46789999999999998 999999999998764
No 28
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=4.2e-15 Score=157.24 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=136.8
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCC----CCCCCccEEEEECCCCchHHHHHHHHHHHc-CCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHL-GARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~----~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g~~viE~nasd~ 214 (666)
+..+.+.+++||+|.+..++.|++++...+... .+..+++.+||+||||||||++|+++|+++ +..++.+++++.
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 456677899999999999999998886322211 123344789999999999999999999999 888999988752
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLL 288 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l 288 (666)
. +.........++.++..+... .+.||+|||+|.+... ....++...++..
T Consensus 83 ~-----------~~~~g~~~~~~~~lf~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 83 V-----------SKWLGESEKLVKNLFQLAREN------------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 139 (322)
T ss_dssp C-----------CSSCCSCHHHHHHHHHHHHHT------------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHH
T ss_pred H-----------hhhhhHHHHHHHHHHHHHHhc------------CCcEEEeecHHHhccccccccchHHHHHHHHHHHH
Confidence 1 111122334455666665432 3679999999976321 2233444445444
Q ss_pred HhcC---CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005987 289 VRST---HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (666)
Q Consensus 289 ~~~~---~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~I 364 (666)
++.. ...+++|++ ++.... +...+.+ |+ ..|.|.+|+.++..++|+..+...+..+++..++.|
T Consensus 140 ld~~~~~~~~v~vI~a-tn~~~~----------ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l 207 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGA-TNIPWV----------LDSAIRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFREL 207 (322)
T ss_dssp HHCSSSCCTTEEEEEE-ESCTTT----------SCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHH
T ss_pred HhcccccCCCEEEEEe-cCCccc----------CCHHHHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4432 223444433 232221 1122222 35 689999999999999999999887777899999999
Q ss_pred HHHcCC----cHHHHHHHH
Q 005987 365 AQASGG----DIRQAITSL 379 (666)
Q Consensus 365 a~~s~G----DIR~AIn~L 379 (666)
+..+.| ||+..++..
T Consensus 208 a~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 208 GRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp HHTCTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 999877 455544443
No 29
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-15 Score=166.90 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=139.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..+-+++-.+.+++|+.|.++.+++|++.+...+... -|..+++.+|||||||||||++|+++|++++..++.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3455666677899999999999999998866433321 14445589999999999999999999999999999998
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l 281 (666)
.++. .+..+......++.++..++.. .|+||+|||+|.+... ....+.
T Consensus 248 ~s~l-----------~~~~vGese~~ir~lF~~A~~~------------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~ 304 (434)
T 4b4t_M 248 APQL-----------VQMYIGEGAKLVRDAFALAKEK------------APTIIFIDELDAIGTKRFDSEKSGDREVQRT 304 (434)
T ss_dssp GGGG-----------CSSCSSHHHHHHHHHHHHHHHH------------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHH
T ss_pred hhhh-----------hhcccchHHHHHHHHHHHHHhc------------CCeEEeecchhhhhhccCCCCCCCchHHHHH
Confidence 7651 1122233445667777777654 3789999999954211 111222
Q ss_pred HHHHHHHHhcC--CCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCC
Q 005987 282 RQCLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 282 ~~~L~~l~~~~--~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
...|+..++.. ...+++ +.+++.++..| +.|.|+ | -..|.|+.|+.....++|+..+....+. +
T Consensus 305 ~~~lL~~ldg~~~~~~ViV-IaaTNrp~~LD----------~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~ 372 (434)
T 4b4t_M 305 MLELLNQLDGFSSDDRVKV-LAATNRVDVLD----------PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-D 372 (434)
T ss_dssp HHHHHHHHTTSCSSCSSEE-EEECSSCCCCC----------TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-S
T ss_pred HHHHHHHhhccCCCCCEEE-EEeCCCchhcC----------HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-C
Confidence 22333333321 223333 34444444333 222221 2 4579999999999999999887765432 1
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 358 TEQIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
+-.++.||..+.| ||+.+++.--+.|.
T Consensus 373 dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 373 DINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp CCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 1236788888665 99988876555554
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.9e-15 Score=163.24 Aligned_cols=215 Identities=14% Similarity=0.178 Sum_probs=141.1
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..+-+++-...+++||.|.++.+++|++.+.-.+... -|..+++.+|||||||||||++|+++|.+++..++.++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 4566777778899999999999999998876433221 14445589999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l 281 (666)
.++. ....+......++.++..+... .|+||+|||+|.+... ....+.
T Consensus 249 ~s~l-----------~sk~vGesek~ir~lF~~Ar~~------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~ 305 (437)
T 4b4t_I 249 GSEL-----------IQKYLGDGPRLCRQIFKVAGEN------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRT 305 (437)
T ss_dssp SGGG-----------CCSSSSHHHHHHHHHHHHHHHT------------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHH
T ss_pred HHHh-----------hhccCchHHHHHHHHHHHHHhc------------CCcEEEEehhhhhcccCCCCCCCccHHHHHH
Confidence 8751 1222233445667777777654 3789999999975321 111222
Q ss_pred HHHHHHHHhc-CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 282 RQCLLLLVRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 282 ~~~L~~l~~~-~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
...|+..++. ....-|+++.+++..+..| +.|.|+ | -..|.|..|+.+...++|+..+....+. ++
T Consensus 306 l~~LL~~lDg~~~~~~ViVIaATNrpd~LD----------pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~d 374 (437)
T 4b4t_I 306 MLELLNQLDGFDDRGDVKVIMATNKIETLD----------PALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-ED 374 (437)
T ss_dssp HHHHHHHHHHCCCSSSEEEEEEESCSTTCC----------TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SC
T ss_pred HHHHHHHhhCcCCCCCEEEEEeCCChhhcC----------HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-Cc
Confidence 2223333332 2222233344444444333 222221 2 3469999999999999998887654432 12
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 359 ~~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
-.++.||..+.| ||+.+++..-+.|.
T Consensus 375 vdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 375 VNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 237888887654 99988877666554
No 31
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.4e-15 Score=163.84 Aligned_cols=212 Identities=14% Similarity=0.154 Sum_probs=137.5
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+=++.-...+++|+.|.++.+++|++++.-.+... -|-.+++.+|||||||||||++|+++|++++..++.++.+
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 34555455789999999999999998865322211 1434458999999999999999999999999999999876
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~ 283 (666)
+. .+..+......++.++..+... .|+||||||+|.+... ....+...
T Consensus 278 ~L-----------~sk~vGesek~ir~lF~~Ar~~------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~ 334 (467)
T 4b4t_H 278 EL-----------VQKYVGEGARMVRELFEMARTK------------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTML 334 (467)
T ss_dssp GG-----------CCCSSSHHHHHHHHHHHHHHHT------------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHH
T ss_pred Hh-----------hcccCCHHHHHHHHHHHHHHhc------------CCceEeecccccccccccCcCCCccHHHHHHHH
Confidence 51 1222233445677777777654 3789999999976321 11122222
Q ss_pred HHHHHHhcC--CCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH
Q 005987 284 CLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (666)
Q Consensus 284 ~L~~l~~~~--~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~ 359 (666)
.++..++.. ..++++ +.+++..+..| ..|.|+ .-..|.|..|+.+...++|+..+....+. .+-
T Consensus 335 ~lL~~lDg~~~~~~ViV-IaATNrpd~LD----------pALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dv 402 (467)
T 4b4t_H 335 ELITQLDGFDPRGNIKV-MFATNRPNTLD----------PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGI 402 (467)
T ss_dssp HHHHHHHSSCCTTTEEE-EEECSCTTSBC----------HHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred HHHHHhhccCCCCcEEE-EeCCCCcccCC----------hhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence 233333321 223444 44444443322 223231 24679999999999999998877654432 112
Q ss_pred HHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 360 QIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 360 ~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
.++.||..+.| ||+.+++.--+.|.
T Consensus 403 dl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 403 RWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 36788888766 99988876555554
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.66 E-value=2.6e-15 Score=157.05 Aligned_cols=215 Identities=15% Similarity=0.144 Sum_probs=138.4
Q ss_pred CccccccCCCCc-------c-ccccCHHHHHHHHHHHHHhhc-------CCCCCCCccEEEEECCCCchHHHHHHHHHHH
Q 005987 137 QLWAEKYKPRSL-------E-ELAVQRKKVEEVRAWFEERLG-------DSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 137 ~~W~eKY~P~sl-------~-eLvg~~k~i~el~~wL~~~~~-------~~~g~~~~k~LLL~GPpG~GKTtla~~LAke 201 (666)
..+.+.|.|..+ + +|+|++..++.|..++..... ......+...+||+||||||||++|+++|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 11 IDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345555555554 2 688999999999988764321 0011222357999999999999999999999
Q ss_pred cC-------CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc
Q 005987 202 LG-------ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG 274 (666)
Q Consensus 202 lg-------~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~ 274 (666)
++ ..++++++++. .+..+..........+..+ .+.||+|||++.+..
T Consensus 91 l~~~~~~~~~~~~~~~~~~l-----------~~~~~g~~~~~~~~~~~~~---------------~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 91 LHRLGYVRKGHLVSVTRDDL-----------VGQYIGHTAPKTKEVLKRA---------------MGGVLFIDEAYYLYR 144 (309)
T ss_dssp HHHTTSSSSCCEEEECGGGT-----------CCSSTTCHHHHHHHHHHHH---------------TTSEEEEETGGGSCC
T ss_pred HHhcCCcCCCcEEEEcHHHh-----------hhhcccccHHHHHHHHHhc---------------CCCEEEEEChhhhcc
Confidence 83 36777775431 1111111222334444443 124999999997732
Q ss_pred hh----HHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHH
Q 005987 275 RT----AFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKIC 349 (666)
Q Consensus 275 ~~----~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~ 349 (666)
.. .-...+..|..+++..+..+++|++.... ..+...+..+.|++ |+ ..|.|.+++.+++..++..++
T Consensus 145 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~-----R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 145 PDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD--RMENFFQSNPGFRS-----RIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH--HHHHHHHHSTTHHH-----HEEEEEEECCCCHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH--HHHHHHhhCHHHHH-----hCCeEEEcCCcCHHHHHHHHHHHH
Confidence 11 01234445666666665445554443110 00000011122332 35 889999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHc--------CCcHHHHHHHHHHHhc
Q 005987 350 RQEQYSLSTEQIDLVAQAS--------GGDIRQAITSLQFSSL 384 (666)
Q Consensus 350 ~~e~i~v~~~~l~~Ia~~s--------~GDIR~AIn~LQf~~~ 384 (666)
...++.+++++++.|+..+ .|++|.+.+.|+.++.
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 218 DDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999863 4999999999998874
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.9e-15 Score=165.05 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=138.1
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+-+++-...+++||.|.+..+++|++++.-.+... -|..+++.+|||||||||||++|+++|++++..++.++.+
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34445555789999999999999999887433321 1444558999999999999999999999999999999876
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~ 283 (666)
+. .+..+......++.++..+... .|+||||||+|.+... ....+...
T Consensus 250 ~l-----------~sk~~Gese~~ir~~F~~A~~~------------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~ 306 (437)
T 4b4t_L 250 GI-----------VDKYIGESARIIREMFAYAKEH------------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM 306 (437)
T ss_dssp GT-----------CCSSSSHHHHHHHHHHHHHHHS------------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHH
T ss_pred hh-----------ccccchHHHHHHHHHHHHHHhc------------CCceeeeecccccccccccCCCCcchHHHHHHH
Confidence 51 1222233445566777777543 3789999999976321 11222333
Q ss_pred HHHHHHhcC--CCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-C-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH
Q 005987 284 CLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-G-ARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (666)
Q Consensus 284 ~L~~l~~~~--~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~ 359 (666)
.|+..++.. ...+++|+ +++.++..| +.|.|+ | -..|.|..|+.....++|+..+....+. ++.
T Consensus 307 ~lL~~lDg~~~~~~vivI~-ATNrp~~LD----------pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~ 374 (437)
T 4b4t_L 307 ELLTQMDGFDNLGQTKIIM-ATNRPDTLD----------PALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEF 374 (437)
T ss_dssp HHHHHHHSSSCTTSSEEEE-EESSTTSSC----------TTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCC
T ss_pred HHHHHhhcccCCCCeEEEE-ecCCchhhC----------HHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-ccc
Confidence 344444322 12333333 333333222 223232 2 3579999999999999998887664432 222
Q ss_pred HHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 360 QIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 360 ~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
.++.||..+.| ||+.+++.--+.|.
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 36788887665 99998876555554
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=2.5e-15 Score=161.33 Aligned_cols=221 Identities=16% Similarity=0.226 Sum_probs=138.7
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---------CCcE
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---------GARL 206 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~v 206 (666)
...|..+|.| ++++|+++.++.+..|+..+.. +..+ +.++|+||||||||++++.+++++ ++.+
T Consensus 9 ~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~---~~~~-~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T 2v1u_A 9 RWVLLPDYVP---DVLPHREAELRRLAEVLAPALR---GEKP-SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81 (387)
T ss_dssp HHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTS---SCCC-CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHc---CCCC-CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 3567888988 6779999999999999987543 2222 589999999999999999999998 8889
Q ss_pred EEEcCCCchhh----hhhhhcccCCccc-cchhHH-HHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHH
Q 005987 207 YEWDTPTPTIW----QEYMHNCKTGLEY-TSKLDE-FENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER 280 (666)
Q Consensus 207 iE~nasd~~~~----~e~l~~~~~g~~~-~s~~~~-f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~ 280 (666)
+.+++...... ...+......... ...... +..+...+.. .+.+.+|+|||++.+.....
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-----------~~~~~vlilDEi~~l~~~~~--- 147 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR-----------LRGIYIIVLDEIDFLPKRPG--- 147 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT-----------SCSEEEEEEETTTHHHHSTT---
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-----------cCCeEEEEEccHhhhcccCC---
Confidence 99998753221 1111111100000 001122 2333332211 12467999999997643210
Q ss_pred HHHHHHHHHhcC-----CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH--hC
Q 005987 281 LRQCLLLLVRST-----HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ--EQ 353 (666)
Q Consensus 281 l~~~L~~l~~~~-----~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~--e~ 353 (666)
.++.|..+++.. ..++++|++.... +. ..... ..+.++.....|.|+|++.+++.++|...+.. .+
T Consensus 148 ~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~-~~---~~~l~---~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~ 220 (387)
T 2v1u_A 148 GQDLLYRITRINQELGDRVWVSLVGITNSL-GF---VENLE---PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP 220 (387)
T ss_dssp HHHHHHHHHHGGGCC-----CEEEEECSCS-TT---SSSSC---HHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT
T ss_pred CChHHHhHhhchhhcCCCceEEEEEEECCC-ch---HhhhC---HHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC
Confidence 122333333311 2233333332111 10 01111 22233322368999999999999999999876 45
Q ss_pred CCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhc
Q 005987 354 YSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (666)
Q Consensus 354 i~v~~~~l~~Ia~~s~---GDIR~AIn~LQf~~~ 384 (666)
..+++++++.|+..++ ||+|.+++.|+.+..
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 6789999999999998 999999999988753
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.64 E-value=4.5e-15 Score=163.91 Aligned_cols=213 Identities=13% Similarity=0.147 Sum_probs=137.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCC----CCCCCccEEEEECCCCchHHHHHHHHHHHc-CCcEEEEc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHL-GARLYEWD 210 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~----~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g~~viE~n 210 (666)
...++.++.|.++++|+|++..++.|+.++...+... .+..+.+.+||+||||||||++|+++|+++ +..++.++
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3457888999999999999999999998875322111 112334789999999999999999999999 88899998
Q ss_pred CCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHH
Q 005987 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (666)
Q Consensus 211 asd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~ 284 (666)
+++.. ... .|. ....+..++..+... .+.||||||+|.+... ....++...
T Consensus 201 ~~~l~--~~~-----~g~----~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 257 (444)
T 2zan_A 201 SSDLV--SKW-----LGE----SEKLVKNLFQLAREN------------KPSIIFIDEIDSLCGSRSENESEAARRIKTE 257 (444)
T ss_dssp CC--------------------CCCTHHHHHHHHHHS------------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHH
T ss_pred HHHHH--hhh-----cch----HHHHHHHHHHHHHHc------------CCeEEEEechHhhccCCCCccccHHHHHHHH
Confidence 87521 111 111 112234455554322 3579999999987321 122344444
Q ss_pred HHHHHhcC---CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 005987 285 LLLLVRST---HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (666)
Q Consensus 285 L~~l~~~~---~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~ 360 (666)
|+..+... ...+++|++. +.+. . +...+.+ |+ ..|.|+.|+.++...+|+..+...+..+++..
T Consensus 258 lL~~l~~~~~~~~~v~vI~at-n~~~-------~---ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~ 325 (444)
T 2zan_A 258 FLVQMQGVGVDNDGILVLGAT-NIPW-------V---LDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEAD 325 (444)
T ss_dssp HHTTTTCSSCCCSSCEEEEEE-SCGG-------G---SCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHH
T ss_pred HHHHHhCcccCCCCEEEEecC-CCcc-------c---cCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHH
Confidence 44444331 2234444333 2211 1 2222323 45 58899999999999999999887777789999
Q ss_pred HHHHHHHcCC----cHHHHHHHHHHHh
Q 005987 361 IDLVAQASGG----DIRQAITSLQFSS 383 (666)
Q Consensus 361 l~~Ia~~s~G----DIR~AIn~LQf~~ 383 (666)
++.|+..+.| ||+.+++..-+.+
T Consensus 326 l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 326 FQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999888 7777766554444
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.2e-14 Score=158.37 Aligned_cols=213 Identities=14% Similarity=0.155 Sum_probs=137.9
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+.+++-...+++|+.|.++.+++|++.+.-.+... -|..+++.+|||||||||||++|+++|++++..++.++.
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344555555789999999999999998876433221 144455899999999999999999999999999999987
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc---------hhHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---------RTAFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~---------~~~~~~l~ 282 (666)
++. .+..+......++.++..++.. .|+||+|||+|.+.. .....+..
T Consensus 240 ~~l-----------~~~~~Ge~e~~ir~lF~~A~~~------------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l 296 (428)
T 4b4t_K 240 SEF-----------VHKYLGEGPRMVRDVFRLAREN------------APSIIFIDEVDSIATKRFDAQTGSDREVQRIL 296 (428)
T ss_dssp GGT-----------CCSSCSHHHHHHHHHHHHHHHT------------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHH
T ss_pred chh-----------hccccchhHHHHHHHHHHHHHc------------CCCeeechhhhhhhccccCCCCCCChHHHHHH
Confidence 651 1222233445677777777654 378999999984321 11223333
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-Ce-eEEEeC-CCCHHHHHHHHHHHHHHhCCCCC
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GA-RKVALN-PITNGSIKRTLSKICRQEQYSLS 357 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~-~~I~F~-p~s~~~i~kiL~~I~~~e~i~v~ 357 (666)
..|+..++. ....+++| .+++.++. |.+.|.|+ |+ ..|.|+ +|+......+|+..+....+. +
T Consensus 297 ~~lL~~ldg~~~~~~v~vI-~aTN~~~~----------LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~ 364 (428)
T 4b4t_K 297 IELLTQMDGFDQSTNVKVI-MATNRADT----------LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-P 364 (428)
T ss_dssp HHHHHHHHHSCSSCSEEEE-EEESCSSS----------CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-T
T ss_pred HHHHHHhhCCCCCCCEEEE-EecCChhh----------cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-c
Confidence 334444442 22234444 33343332 22333332 33 468995 788999999998887655432 2
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 358 TEQIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 358 ~~~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
+..++.||..+.| ||+.+++..-+.|.
T Consensus 365 ~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 365 EADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp TCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2237888887665 99988876555554
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=8.8e-15 Score=151.30 Aligned_cols=212 Identities=14% Similarity=0.173 Sum_probs=131.8
Q ss_pred cccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
-++...+.++++|+|.+..+++|..++....... .+..+++.+||+||||||||++|+++|++++..++.++.++
T Consensus 7 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp EEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 4456667789999999999999999987543210 01223368999999999999999999999999999988654
Q ss_pred chhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc----------chhHHHHHHH
Q 005987 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN----------GRTAFERLRQ 283 (666)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~----------~~~~~~~l~~ 283 (666)
. .+.........+...+..+... .+.||+|||++.+. .......+..
T Consensus 87 ~-----------~~~~~~~~~~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ 143 (285)
T 3h4m_A 87 L-----------VKKFIGEGASLVKDIFKLAKEK------------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQ 143 (285)
T ss_dssp G-----------CCCSTTHHHHHHHHHHHHHHHT------------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHH
T ss_pred H-----------HHhccchHHHHHHHHHHHHHHc------------CCeEEEEECHHHhcccCccccCCccHHHHHHHHH
Confidence 1 1111122223344555555332 35799999998752 1111122222
Q ss_pred HHHHHHh-cCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 284 CLLLLVR-STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 284 ~L~~l~~-~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
.+..+-. ....++++|++. +... .+. ..+++..|+ ..+.|.+|+.++..++|+..+...++. .+..+
T Consensus 144 ll~~~~~~~~~~~~~vI~tt-n~~~-------~l~--~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~ 212 (285)
T 3h4m_A 144 LLAEMDGFDARGDVKIIGAT-NRPD-------ILD--PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNL 212 (285)
T ss_dssp HHHHHHTTCSSSSEEEEEEC-SCGG-------GBC--HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCH
T ss_pred HHHHhhCCCCCCCEEEEEeC-CCch-------hcC--HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCH
Confidence 2222211 122234444443 2211 111 222221134 579999999999999999887765543 23346
Q ss_pred HHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 362 DLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
..|+..+.| ||+.+++.....|.
T Consensus 213 ~~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 213 EEIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 778877766 88888887777765
No 38
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.62 E-value=1.2e-14 Score=154.39 Aligned_cols=192 Identities=16% Similarity=0.140 Sum_probs=121.3
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEE-EcCCCchhhhhhh--------hc
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WDTPTPTIWQEYM--------HN 223 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE-~nasd~~~~~e~l--------~~ 223 (666)
.|+...+.+...++. |+.+ +.+||+||||+|||++|+++|+.+.+.... ..+...+.....+ ..
T Consensus 6 w~~~~~~~l~~~i~~------~~~~-~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------GRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp GGHHHHHHHHHHHHT------TCCC-SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEE
T ss_pred chHHHHHHHHHHHHc------CCcc-eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 466777777777765 6665 689999999999999999999998653210 0000000000000 00
Q ss_pred ccCC-ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce-EEEEe
Q 005987 224 CKTG-LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLT 301 (666)
Q Consensus 224 ~~~g-~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi-ViIit 301 (666)
.... ..-....+.++++++.+...+ ....++|+||||+|.+... ..+.|+.+++.....+ +|+++
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~--------~~~~~kvviIdead~l~~~-----a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHA--------RLGGAKVVWVTDAALLTDA-----AANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCC--------TTSSCEEEEESCGGGBCHH-----HHHHHHHHHTSCCTTEEEEEEE
T ss_pred EeccccCCCCCHHHHHHHHHHHhhcc--------ccCCcEEEEECchhhcCHH-----HHHHHHHHhcCCCCCeEEEEEe
Confidence 0000 000123455666665543221 1124679999999988643 2344666677654333 34444
Q ss_pred cCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005987 302 ECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 302 ~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf 381 (666)
+. ..+.++.+++ ||..+.|.+++.+++.++|..++ .+++++++.++..++||+|.|++.|+-
T Consensus 146 ~~--------~~~l~~ti~S-----Rc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 146 RE--------PERLLATLRS-----RCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp SC--------GGGSCHHHHT-----TSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred CC--------hHhCcHHHhh-----cceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 31 1233444443 59999999999999999998775 678999999999999999999998764
Q ss_pred H
Q 005987 382 S 382 (666)
Q Consensus 382 ~ 382 (666)
.
T Consensus 208 ~ 208 (334)
T 1a5t_A 208 D 208 (334)
T ss_dssp H
T ss_pred c
Confidence 3
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.61 E-value=4.7e-14 Score=143.61 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=121.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCC----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~ 220 (666)
+.++++|+|++..++.|++++....... .|...++.+||+||||||||++|+++|++++..++.+++++..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~----- 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFV----- 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTS-----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH-----
Confidence 4678999999999999988876422111 0222346899999999999999999999999999999887521
Q ss_pred hhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-----------HHHHHHHHHHHHH
Q 005987 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-----------AFERLRQCLLLLV 289 (666)
Q Consensus 221 l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-----------~~~~l~~~L~~l~ 289 (666)
.... ......+..++..+... .+.||+|||++.+.... ....+.. +...+
T Consensus 77 --~~~~----~~~~~~~~~~~~~a~~~------------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~ 137 (262)
T 2qz4_A 77 --EVIG----GLGAARVRSLFKEARAR------------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ-LLVEM 137 (262)
T ss_dssp --SSST----THHHHHHHHHHHHHHHT------------CSEEEEEECC-------------------CHHHHH-HHHHH
T ss_pred --hhcc----ChhHHHHHHHHHHHHhc------------CCeEEEEeCcchhhccccccccCccchhHHHHHHH-HHHHh
Confidence 0011 11223445555555432 25799999999874321 0111222 22222
Q ss_pred hc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-Ce-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHH
Q 005987 290 RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQ-IDLV 364 (666)
Q Consensus 290 ~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~-l~~I 364 (666)
.. ....+++|++. +... . +...+.++ |+ ..+.|.+|+.++..++++..+...++..+... +..|
T Consensus 138 ~~~~~~~~~~vi~~t-n~~~-------~---ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l 206 (262)
T 2qz4_A 138 DGMGTTDHVIVLAST-NRAD-------I---LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRL 206 (262)
T ss_dssp HTCCTTCCEEEEEEE-SCGG-------G---GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHH
T ss_pred hCcCCCCCEEEEecC-CChh-------h---cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 32 12234444433 2211 1 11222221 33 67899999999999999999998888777654 5788
Q ss_pred HHHcCC----cHHHHHHHHHH
Q 005987 365 AQASGG----DIRQAITSLQF 381 (666)
Q Consensus 365 a~~s~G----DIR~AIn~LQf 381 (666)
+..+.| ||+.+++....
T Consensus 207 ~~~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 207 AELTPGFSGADIANICNEAAL 227 (262)
T ss_dssp HHTCTTCCHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHH
Confidence 887665 55555554433
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=1.6e-14 Score=152.52 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=126.9
Q ss_pred CCccccc---cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhh
Q 005987 146 RSLEELA---VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQE 219 (666)
Q Consensus 146 ~sl~eLv---g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e 219 (666)
.+|++++ .+......++.+++.. +. ..+.++|+|||||||||+++++++++ +..++.+++.+. ..+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----~~-~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~--~~~ 79 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----GS-LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF--AQA 79 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----TT-SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--HHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----CC-CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHH
Confidence 3677776 3555666666666531 21 22579999999999999999999999 888998886431 111
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch-hHHHHHHHHHHHHHhcCCCceEE
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-TAFERLRQCLLLLVRSTHIPTAV 298 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~-~~~~~l~~~L~~l~~~~~~PiVi 298 (666)
....... . ....|..... .+.+|+|||++.+... .....+...+..+.+.+. .++
T Consensus 80 ~~~~~~~-----~---~~~~~~~~~~--------------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~--~ii 135 (324)
T 1l8q_A 80 MVEHLKK-----G---TINEFRNMYK--------------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK--QII 135 (324)
T ss_dssp HHHHHHH-----T---CHHHHHHHHH--------------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC--EEE
T ss_pred HHHHHHc-----C---cHHHHHHHhc--------------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC--eEE
Confidence 1100000 0 1112222221 1359999999987652 222334444444444332 344
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~ 378 (666)
++++.. ... .....+.|.+.+. ....+.|.| +.+++..+|...+...++.+++++++.|+..+ ||+|.+.+.
T Consensus 136 i~~~~~-~~~---l~~l~~~L~sR~~--~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 136 LASDRH-PQK---LDGVSDRLVSRFE--GGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp EEESSC-GGG---CTTSCHHHHHHHH--TSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHH
T ss_pred EEecCC-hHH---HHHhhhHhhhccc--CceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHH
Confidence 444321 110 0112233443322 137899999 99999999999999999999999999999999 999999999
Q ss_pred HHHHhc
Q 005987 379 LQFSSL 384 (666)
Q Consensus 379 LQf~~~ 384 (666)
|+.++.
T Consensus 208 l~~~~~ 213 (324)
T 1l8q_A 208 IKLIKL 213 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 41
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=1.6e-14 Score=147.43 Aligned_cols=210 Identities=15% Similarity=0.211 Sum_probs=127.2
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+|.++|.|.++++|+|++..++++...+.. +... -+...++.++|+|||||||||+++++|++++..++.++.+
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 599999999999999999999988877653 2210 0112236799999999999999999999999999999876
Q ss_pred CchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHH
Q 005987 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQ 283 (666)
Q Consensus 213 d~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~ 283 (666)
+... ...| .....+..+++.+... .+.+++|||+|.+... ........
T Consensus 80 ~~~~-------~~~~----~~~~~~~~~~~~a~~~------------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1lv7_A 80 DFVE-------MFVG----VGASRVRDMFEQAKKA------------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 136 (257)
T ss_dssp SSTT-------SCCC----CCHHHHHHHHHHHHTT------------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHH
T ss_pred HHHH-------Hhhh----hhHHHHHHHHHHHHHc------------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHH
Confidence 5211 0111 1223455556655321 3579999999754221 11122222
Q ss_pred HHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhh--cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH
Q 005987 284 CLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVD--AGARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (666)
Q Consensus 284 ~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r--~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~ 359 (666)
.+...+.. ...++++|++. +.....+ ..+.+ +....|.|.+|+.++..++|+..+....+. ++.
T Consensus 137 ~ll~~l~~~~~~~~~~vI~~t-n~~~~l~----------~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~ 204 (257)
T 1lv7_A 137 QMLVEMDGFEGNEGIIVIAAT-NRPDVLD----------PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDI 204 (257)
T ss_dssp HHHHHHHTCCSSSCEEEEEEE-SCTTTSC----------GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred HHHHHhhCcccCCCEEEEEee-CCchhCC----------HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccc
Confidence 23333332 22334444433 2222111 11111 123578999999999999998877654322 223
Q ss_pred HHHHHHHHcCC----cHHHHHHHHHHHh
Q 005987 360 QIDLVAQASGG----DIRQAITSLQFSS 383 (666)
Q Consensus 360 ~l~~Ia~~s~G----DIR~AIn~LQf~~ 383 (666)
.+..++..+.| |++.+++.....|
T Consensus 205 ~~~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 205 DAAIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36778888888 4555544444433
No 42
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.3e-14 Score=155.37 Aligned_cols=223 Identities=16% Similarity=0.245 Sum_probs=135.9
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc------CCcEEEE
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL------GARLYEW 209 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel------g~~viE~ 209 (666)
..+|..+|.| ++++|+++.++.+..++..+... .. .+.++|+|||||||||+++.+++++ +..++.+
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~---~~-~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYRE---EK-PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGT---CC-CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcC---CC-CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4567788988 56799999999999999865432 22 2589999999999999999999998 8888888
Q ss_pred cCCCchh----hhhhhhcccCCccc-c-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 210 DTPTPTI----WQEYMHNCKTGLEY-T-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 210 nasd~~~----~~e~l~~~~~g~~~-~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
++..... +...+......... . +..+.+..+...+... +.+.||+|||++.+..... ..+..
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlilDE~~~l~~~~~-~~~l~ 150 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY-----------GSQVVIVLDEIDAFVKKYN-DDILY 150 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC-----------CSCEEEEEETHHHHHHSSC-STHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-----------CCeEEEEEcChhhhhccCc-CHHHH
Confidence 8643211 11111111000000 0 1111233333332211 2367999999987542100 01122
Q ss_pred HHHHHHhc-CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh--CCCCCHHH
Q 005987 284 CLLLLVRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLSTEQ 360 (666)
Q Consensus 284 ~L~~l~~~-~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e--~i~v~~~~ 360 (666)
.|...+.. ...++.+|++.... . ........+. ++.....|.|+|++.+++.++|...+... ...+++++
T Consensus 151 ~l~~~~~~~~~~~~~~I~~~~~~-~---~~~~~~~~~~---~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 223 (386)
T 2qby_A 151 KLSRINSEVNKSKISFIGITNDV-K---FVDLLDPRVK---SSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNV 223 (386)
T ss_dssp HHHHHHHSCCC--EEEEEEESCG-G---GGGGCTTHHH---HTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHH
T ss_pred HHhhchhhcCCCeEEEEEEECCC-C---hHhhhCHHHh---ccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 23333332 22234333333211 0 1111112222 23223689999999999999999988653 36789999
Q ss_pred HHHHHHHcC---CcHHHHHHHHHHHhc
Q 005987 361 IDLVAQASG---GDIRQAITSLQFSSL 384 (666)
Q Consensus 361 l~~Ia~~s~---GDIR~AIn~LQf~~~ 384 (666)
++.|+..++ ||+|.+++.|+.++.
T Consensus 224 ~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 224 IKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988 999999998887653
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.57 E-value=2.6e-14 Score=147.13 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=120.9
Q ss_pred ccccCHHHHHHHHHH---HHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccC
Q 005987 150 ELAVQRKKVEEVRAW---FEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 150 eLvg~~k~i~el~~w---L~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~ 226 (666)
.++++...++.+... +...+... +..+.+.+||+||||||||++|+++|++++..++.+++++. ..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~-~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----------~~ 102 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS-DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----------MI 102 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC-SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----------CT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc-CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----------hc
Confidence 356766666666553 22222211 22333789999999999999999999999999999987641 11
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc-----hhHHHHHHHHHHHHHhcC---CCceEE
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-----RTAFERLRQCLLLLVRST---HIPTAV 298 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~-----~~~~~~l~~~L~~l~~~~---~~PiVi 298 (666)
|.........+...+..+.. ..+.+|+|||++.+.+ ......+.+.|..++... ..++++
T Consensus 103 g~~~~~~~~~~~~~~~~~~~------------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 103 GFSETAKCQAMKKIFDDAYK------------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp TCCHHHHHHHHHHHHHHHHT------------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CCchHHHHHHHHHHHHHHHh------------cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 21111222344445554422 1357999999986521 111234555566666542 234444
Q ss_pred EEecCCCCCCccchhhhhhHHHH-HHhhcCeeEEEeCCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-----c
Q 005987 299 VLTECGKADSVDSTAQSFEELQS-ILVDAGARKVALNPITN-GSIKRTLSKICRQEQYSLSTEQIDLVAQASGG-----D 371 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s-~L~r~r~~~I~F~p~s~-~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~G-----D 371 (666)
|++. +.. . .+.. .+.++.+..|.|++++. .++.+++.+ . ..++++.+..|+..+.| |
T Consensus 171 i~tt-n~~-------~---~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ 234 (272)
T 1d2n_A 171 IGTT-SRK-------D---VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIG 234 (272)
T ss_dssp EEEE-SCH-------H---HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEEC
T ss_pred EEec-CCh-------h---hcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCcccc
Confidence 4443 211 1 1222 22222378899998887 666655543 2 25789999999999988 9
Q ss_pred HHHHHHHHHHHhc
Q 005987 372 IRQAITSLQFSSL 384 (666)
Q Consensus 372 IR~AIn~LQf~~~ 384 (666)
+|.++|.++.+..
T Consensus 235 ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 235 IKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.56 E-value=3e-14 Score=157.08 Aligned_cols=200 Identities=20% Similarity=0.237 Sum_probs=127.2
Q ss_pred Cccccc-c--CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCCchhhh
Q 005987 147 SLEELA-V--QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQ 218 (666)
Q Consensus 147 sl~eLv-g--~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd~~~~~ 218 (666)
+|++++ | +......+..+.+. ++. .+.++|+|||||||||+++++|+++ +..++.+++.+. ..
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~-----~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~ 173 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKH-----PGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LN 173 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHS-----TTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhC-----CCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HH
Confidence 788887 4 44445555554443 122 3689999999999999999999998 788888775431 11
Q ss_pred hhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch-hHHHHHHHHHHHHHhcCCCceE
Q 005987 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-TAFERLRQCLLLLVRSTHIPTA 297 (666)
Q Consensus 219 e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~-~~~~~l~~~L~~l~~~~~~PiV 297 (666)
+.......+ ....|... +. ..+.||||||++.+... .....+...+..+.+.+ . .|
T Consensus 174 ~~~~~~~~~--------~~~~~~~~---~~----------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~-~i 230 (440)
T 2z4s_A 174 DLVDSMKEG--------KLNEFREK---YR----------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-K-QI 230 (440)
T ss_dssp HHHHHHHTT--------CHHHHHHH---HT----------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-C-EE
T ss_pred HHHHHHHcc--------cHHHHHHH---hc----------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-C-eE
Confidence 111000000 01112221 11 02459999999987653 23344444455544433 2 34
Q ss_pred EEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 298 iIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
+++++... .. .....+.|.+.+.. ...+.|.+|+.+++..+|.+.+..+++.+++++++.|+..+.||+|.+.+
T Consensus 231 Iitt~~~~-~~---l~~l~~~L~sR~~~--g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 231 VICSDREP-QK---LSEFQDRLVSRFQM--GLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp EEEESSCG-GG---CSSCCHHHHHHHHS--SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHH
T ss_pred EEEECCCH-HH---HHHHHHHHHhhccC--CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 44444211 10 01122334443321 26789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 005987 378 SLQFSSL 384 (666)
Q Consensus 378 ~LQf~~~ 384 (666)
.|+.++.
T Consensus 305 ~L~~~~~ 311 (440)
T 2z4s_A 305 AIIKLLV 311 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.5e-14 Score=148.11 Aligned_cols=168 Identities=9% Similarity=0.092 Sum_probs=114.9
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc------CCcEEEEcCCCchhhhhhhhcccC
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL------GARLYEWDTPTPTIWQEYMHNCKT 226 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel------g~~viE~nasd~~~~~e~l~~~~~ 226 (666)
||++.++.++..++. ++ . +++||+||||+|||++++++|+.+ ..+++++++.+.
T Consensus 1 g~~~~~~~L~~~i~~------~~-~-~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------------ 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SE-G-ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------------ 60 (305)
T ss_dssp ---CHHHHHHHHHHT------CS-S-EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------------
T ss_pred ChHHHHHHHHHHHHC------CC-C-cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------------
Confidence 577888888888876 55 2 589999999999999999999974 346677765420
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCce-EEEEecCCC
Q 005987 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLTECGK 305 (666)
Q Consensus 227 g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~Pi-ViIit~~~~ 305 (666)
....+.++++++.+...+. . ...+|+||||++.+... .+++|+.+++.....+ +|++++ +
T Consensus 61 ----~~~id~ir~li~~~~~~p~-----~---~~~kvviIdead~lt~~-----a~naLLk~LEep~~~t~fIl~t~-~- 121 (305)
T 2gno_A 61 ----NIGIDDIRTIKDFLNYSPE-----L---YTRKYVIVHDCERMTQQ-----AANAFLKALEEPPEYAVIVLNTR-R- 121 (305)
T ss_dssp ----CBCHHHHHHHHHHHTSCCS-----S---SSSEEEEETTGGGBCHH-----HHHHTHHHHHSCCTTEEEEEEES-C-
T ss_pred ----CCCHHHHHHHHHHHhhccc-----c---CCceEEEeccHHHhCHH-----HHHHHHHHHhCCCCCeEEEEEEC-C-
Confidence 1234566777776643221 1 23579999999988643 2345777777654333 344443 1
Q ss_pred CCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005987 306 ADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQF 381 (666)
Q Consensus 306 ~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf 381 (666)
..+.++.+++ | .+.|.+++.+++.+.|.+++ .++++++ ..+.||+|.|+|.||-
T Consensus 122 ------~~kl~~tI~S-----R--~~~f~~l~~~~i~~~L~~~~-----~i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 122 ------WHYLLPTIKS-----R--VFRVVVNVPKEFRDLVKEKI-----GDLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp ------GGGSCHHHHT-----T--SEEEECCCCHHHHHHHHHHH-----TTHHHHC----GGGGTCHHHHHHHHHH
T ss_pred ------hHhChHHHHc-----e--eEeCCCCCHHHHHHHHHHHh-----CCCHHHH----HHHCCCHHHHHHHHHH
Confidence 2244444443 4 89999999999999999988 2566665 4468999999999873
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.55 E-value=1.8e-13 Score=142.56 Aligned_cols=209 Identities=15% Similarity=0.193 Sum_probs=127.9
Q ss_pred ccccCHHHHHHHHHHHHHhhcCC-------CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhh
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDS-------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~-------~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~ 222 (666)
+++|++..++.|...+....... .+.. ++.+||+||||||||++|+++|+.++..++.+++++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~------ 88 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE------ 88 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCC-CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS------
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCC-CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc------
Confidence 47999999999998887532110 0112 267999999999999999999999999999998764210
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh-------HHHHHHHHHHHHHhcCC--
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-------AFERLRQCLLLLVRSTH-- 293 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~-------~~~~l~~~L~~l~~~~~-- 293 (666)
.+..-......+..++..+.. .+ . ....+.||+|||++.+.... ....+++.|..+++...
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 89 ---VGYVGKEVDSIIRDLTDSAGG--AI----D-AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp ---CCSGGGSTTHHHHHHHHTTTT--CH----H-HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred ---CCccCccHHHHHHHHHHHhhH--HH----h-hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 010000111123333321100 00 0 00124599999999875321 11223455666666531
Q ss_pred --------CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCe-eEEEeCCCCHHHHHHHHHH-----------HHHHhC
Q 005987 294 --------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA-RKVALNPITNGSIKRTLSK-----------ICRQEQ 353 (666)
Q Consensus 294 --------~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~-~~I~F~p~s~~~i~kiL~~-----------I~~~e~ 353 (666)
..+++|++...... ...... ..+++| + ..|.|++++.+++.++|++ .+..++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~---~~~~l~---~~l~~R--~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 230 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVA---RPSDLI---PELQGR--LPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 230 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSS---CGGGSC---HHHHHT--CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred cccccccCCcEEEEEcCCcccC---CcccCC---HHHHhh--CCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 23455554311000 011111 233333 5 5699999999999999882 333344
Q ss_pred --CCCCHHHHHHHHHHc--------CCcHHHHHHHHHHHh
Q 005987 354 --YSLSTEQIDLVAQAS--------GGDIRQAITSLQFSS 383 (666)
Q Consensus 354 --i~v~~~~l~~Ia~~s--------~GDIR~AIn~LQf~~ 383 (666)
+.+++++++.|+..+ .||+|.+.+.|+.+.
T Consensus 231 ~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 231 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred CeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 368999999999998 899999999998865
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=149.27 Aligned_cols=211 Identities=14% Similarity=0.193 Sum_probs=128.9
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+.++.+.++++|+|.+..+++|+.++...+... -+..+++.+||+||||||||++|+++|++++..++.+++++.
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 345677899999999999999999987422110 022334789999999999999999999999999999886531
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---------HHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLRQCL 285 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---------~~~~l~~~L 285 (666)
..... |. ....+..++..+... .+.||+|||+|.+.... ...++...|
T Consensus 86 --~~~~~-----g~----~~~~~~~~f~~a~~~------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~l 142 (301)
T 3cf0_A 86 --LTMWF-----GE----SEANVREIFDKARQA------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 142 (301)
T ss_dssp --HHHHH-----TT----CTTHHHHHHHHHHHT------------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHH
T ss_pred --Hhhhc-----Cc----hHHHHHHHHHHHHhc------------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHH
Confidence 11111 11 112345556655432 35799999999653210 011223334
Q ss_pred HHHHhcC--CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 286 LLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 286 ~~l~~~~--~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
+..++.. ...+++|++. +.....| ..+++..| ...|.|.+|+..+..++|+..+...++. .+..++
T Consensus 143 L~~l~~~~~~~~v~vi~at-n~~~~ld---------~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~ 211 (301)
T 3cf0_A 143 LTEMDGMSTKKNVFIIGAT-NRPDIID---------PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE 211 (301)
T ss_dssp HHHHHSSCTTSSEEEEEEE-SCGGGSC---------GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHH
T ss_pred HHHhhcccCCCCEEEEEec-CCccccC---------hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHH
Confidence 4444421 2234444333 2221111 11222112 3579999999999999999988776543 122345
Q ss_pred HHHHHc----CCcHHHHHHHHHHHhc
Q 005987 363 LVAQAS----GGDIRQAITSLQFSSL 384 (666)
Q Consensus 363 ~Ia~~s----~GDIR~AIn~LQf~~~ 384 (666)
.|+..+ ++||+.+++...+.+.
T Consensus 212 ~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 212 FLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 566553 4588888877666654
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=1.3e-14 Score=161.21 Aligned_cols=199 Identities=19% Similarity=0.210 Sum_probs=130.9
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------C
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------G 203 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g 203 (666)
.....|+++|+|.++++++|+++.++.+..++.. .. .+.+||+||||||||++|+++|+.+ +
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------RT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------SS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------cC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 3567899999999999999999999999998875 11 2578999999999999999999997 6
Q ss_pred CcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHH
Q 005987 204 ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (666)
Q Consensus 204 ~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~ 283 (666)
..++.+++.. ...|. ....+..++..+... .+.||||| . .. ...+
T Consensus 237 ~~~~~l~~~~----------~~~g~----~e~~~~~~~~~~~~~------------~~~iLfiD---~--~~----~a~~ 281 (468)
T 3pxg_A 237 KRVMTLDMGT----------KYRGE----FEDRLKKVMDEIRQA------------GNIILFID---A--AI----DASN 281 (468)
T ss_dssp CCEECC------------------------CTTHHHHHHHHHTC------------CCCEEEEC---C------------
T ss_pred CeEEEeeCCc----------cccch----HHHHHHHHHHHHHhc------------CCeEEEEe---C--ch----hHHH
Confidence 6677666541 00111 112345566665432 24699999 1 11 1223
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCCCHH
Q 005987 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLSTE 359 (666)
Q Consensus 284 ~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v~~~ 359 (666)
.|...+..+. +.+|++. +... +.+.+. +...+.+ ||..|.|.+|+.+++..+|+.++.. .++.++++
T Consensus 282 ~L~~~L~~g~--v~vI~at-~~~e----~~~~~~-~~~al~~-Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~ 352 (468)
T 3pxg_A 282 ILKPSLARGE--LQCIGAT-TLDE----YRKYIE-KDAALER-RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD 352 (468)
T ss_dssp --CCCTTSSS--CEEEEEC-CTTT----THHHHT-TCSHHHH-SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH
T ss_pred HHHHhhcCCC--EEEEecC-CHHH----HHHHhh-cCHHHHH-hCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 3444445443 3333332 2211 111121 2222333 6889999999999999999998876 67889999
Q ss_pred HHHHHHHHcCCcH------HHHHHHHHHHhc
Q 005987 360 QIDLVAQASGGDI------RQAITSLQFSSL 384 (666)
Q Consensus 360 ~l~~Ia~~s~GDI------R~AIn~LQf~~~ 384 (666)
++..++..+.+.+ +.||+.|.-++.
T Consensus 353 al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 353 AIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 9999999877655 468888877663
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=8.1e-14 Score=165.89 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=134.6
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
....|+++|+|.++++++|+++.++.+..++.. +. .+.+||+||||||||++|+.+|+.+ +.
T Consensus 156 ~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 227 (854)
T 1qvr_A 156 YGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------RT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 227 (854)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------SS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC
T ss_pred HHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------CC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCC
Confidence 346799999999999999999999999998864 22 1468999999999999999999998 78
Q ss_pred cEEEEcCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHH---HH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF---ER 280 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~---~~ 280 (666)
.++.++.+.. ..|..+ ......+..++..+... ..+.||+|||++.+.+.... ..
T Consensus 228 ~~~~l~~~~l----------~~g~~~~g~~~~~l~~~~~~~~~~-----------~~~~iL~IDEi~~l~~~~~~~g~~~ 286 (854)
T 1qvr_A 228 RIVSLQMGSL----------LAGAKYRGEFEERLKAVIQEVVQS-----------QGEVILFIDELHTVVGAGKAEGAVD 286 (854)
T ss_dssp EEEEECC---------------------CHHHHHHHHHHHHHTT-----------CSSEEEEECCC--------------
T ss_pred eEEEeehHHh----------hccCccchHHHHHHHHHHHHHHhc-----------CCCeEEEEecHHHHhccCCccchHH
Confidence 8888876541 112222 12233456666666432 13579999999987532111 12
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCC
Q 005987 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSL 356 (666)
Q Consensus 281 l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v 356 (666)
+.+.|..++..+...+|..++. . ...+ +. +...|.+ |+..|.|.+|+.+++..+|+.++.. .++.+
T Consensus 287 ~~~~L~~~l~~~~i~~I~at~~-~------~~~~-~~-~d~aL~r-Rf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i 356 (854)
T 1qvr_A 287 AGNMLKPALARGELRLIGATTL-D------EYRE-IE-KDPALER-RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRI 356 (854)
T ss_dssp -----HHHHHTTCCCEEEEECH-H------HHHH-HT-TCTTTCS-CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCeEEEEecCc-h------HHhh-hc-cCHHHHh-CCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCC
Confidence 3345666676665543332221 0 0111 11 1223333 5778999999999999999887764 47889
Q ss_pred CHHHHHHHHHHcCCc------HHHHHHHHHHHhc
Q 005987 357 STEQIDLVAQASGGD------IRQAITSLQFSSL 384 (666)
Q Consensus 357 ~~~~l~~Ia~~s~GD------IR~AIn~LQf~~~ 384 (666)
+++++..++..+.|. .+.|+..+.-++.
T Consensus 357 ~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 357 SDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp CHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhcccccChHHHHHHHHHHHH
Confidence 999999999987654 5677777765543
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=4.1e-14 Score=135.68 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=105.6
Q ss_pred CCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CCc
Q 005987 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (666)
Q Consensus 136 ~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~~ 205 (666)
..+|.++|+|.++++++|+++.++.+..++.. +. .+.++|+||||||||++++.+|+++ +..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------RT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------SS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhc------CC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 35799999999999999999999999988764 22 2579999999999999999999997 566
Q ss_pred EEEEcCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHH---HHH
Q 005987 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF---ERL 281 (666)
Q Consensus 206 viE~nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~---~~l 281 (666)
++.++.... ..+..+ ......+..++..+... ..+.||+|||++.+...... ..+
T Consensus 81 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vl~iDe~~~l~~~~~~~~~~~~ 139 (195)
T 1jbk_A 81 VLALDMGAL----------VAGAKYRGEFEERLKGVLNDLAKQ-----------EGNVILFIDELHTMVGAGKADGAMDA 139 (195)
T ss_dssp EEEECHHHH----------HTTTCSHHHHHHHHHHHHHHHHHS-----------TTTEEEEEETGGGGTT------CCCC
T ss_pred EEEeeHHHH----------hccCCccccHHHHHHHHHHHHhhc-----------CCCeEEEEeCHHHHhccCcccchHHH
Confidence 666654220 011111 11122344455444322 13579999999987532100 112
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHH
Q 005987 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTL 345 (666)
Q Consensus 282 ~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL 345 (666)
.+.|..+++..+..+|++++.. .....+ .+...+.+ |+..|.|.+|+.+++.++|
T Consensus 140 ~~~l~~~~~~~~~~~i~~~~~~-------~~~~~~-~~~~~l~~-r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 140 GNMLKPALARGELHCVGATTLD-------EYRQYI-EKDAALER-RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHHHTTSCCEEEEECHH-------HHHHHT-TTCHHHHT-TEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhhccCCeEEEEeCCHH-------HHHHHH-hcCHHHHH-HhceeecCCCCHHHHHHHh
Confidence 3345555665554443333220 001111 11222323 5778999999999887654
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.49 E-value=6e-13 Score=147.31 Aligned_cols=211 Identities=14% Similarity=0.251 Sum_probs=128.0
Q ss_pred ccccc-cCCCCccccccCHHHHHHHHHHHHHhhc-----CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 138 LWAEK-YKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 138 ~W~eK-Y~P~sl~eLvg~~k~i~el~~wL~~~~~-----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
+|.+. ..+.+|+||+|.+..++++++.+..... ......+ +.+||+||||||||++++++|.+++..++.++.
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p-~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCC-SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCC-CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 35555 4556899999999999999888764211 1112333 679999999999999999999999999999887
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---------HHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---------~~~~l~ 282 (666)
++... ...| .....++..+.++... .+.||||||+|.+.... ......
T Consensus 83 ~~~~~-------~~~g----~~~~~~r~lf~~A~~~------------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l 139 (476)
T 2ce7_A 83 SDFVE-------LFVG----VGAARVRDLFAQAKAH------------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTL 139 (476)
T ss_dssp GGTTT-------CCTT----HHHHHHHHHHHHHHHT------------CSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred HHHHH-------HHhc----ccHHHHHHHHHHHHhc------------CCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence 64210 1111 1233456666666432 36799999999764321 111222
Q ss_pred HHHHHHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhh-cC-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCH
Q 005987 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVD-AG-ARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r-~r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~ 358 (666)
..|+..++. ....+++|+++ +..+. +...+.+ -| -..|.|.+|+..+..++|+..+....+. ++
T Consensus 140 ~~LL~~ld~~~~~~~viVIaaT-n~~~~----------Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~ 207 (476)
T 2ce7_A 140 NQLLVEMDGFDSKEGIIVMAAT-NRPDI----------LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-ED 207 (476)
T ss_dssp HHHHHHHHHSCGGGTEEEEEEE-SCGGG----------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred HHHHHHHhccCCCCCEEEEEec-CChhh----------hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-ch
Confidence 223333331 12234444433 22211 1111211 12 3478999999999999998777654332 22
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 359 ~~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
..+..|+..+.| ||+.+++..-..+.
T Consensus 208 v~l~~la~~t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 208 VNLEIIAKRTPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 237778888777 56666665555443
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.46 E-value=2.3e-13 Score=151.52 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=129.4
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
+.+.+.++++|+|.+..+++|++++...+... -|..+++.+||+||||||||++|+++|++++..++.+++++..
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 45678899999999999999999987532210 0122336899999999999999999999999999999875411
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc------hhHHHHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG------RTAFERLRQCLLLLV 289 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~------~~~~~~l~~~L~~l~ 289 (666)
. ..+......+...+..+... .+.+|||||+|.+.. .....+++..|+.++
T Consensus 276 -------~----~~~g~~~~~~~~~f~~A~~~------------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l 332 (489)
T 3hu3_A 276 -------S----KLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (489)
T ss_dssp -------T----SCTTHHHHHHHHHHHHHHHT------------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH
T ss_pred -------h----hhcchhHHHHHHHHHHHHhc------------CCcEEEecchhhhccccccccchHHHHHHHHHHHHh
Confidence 1 11122233455666666432 357999999976533 112234455565555
Q ss_pred hcC--CCceEEEEecCCCCCCccchhhhhhHHHHHHhh--cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 290 RST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVD--AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 290 ~~~--~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r--~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
+.. ...+++|+++ +.... |...+.+ .....|.|.+|+..+..++|+..+....+. .+..+..++
T Consensus 333 d~~~~~~~v~vIaaT-n~~~~----------Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la 400 (489)
T 3hu3_A 333 DGLKQRAHVIVMAAT-NRPNS----------IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400 (489)
T ss_dssp HHSCTTSCEEEEEEE-SCGGG----------BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHH
T ss_pred hccccCCceEEEEec-CCccc----------cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHH
Confidence 532 2234444333 32211 1122222 123569999999999999999887654433 233467888
Q ss_pred HHcCCcHHHHHHHH
Q 005987 366 QASGGDIRQAITSL 379 (666)
Q Consensus 366 ~~s~GDIR~AIn~L 379 (666)
..+.|.....|..|
T Consensus 401 ~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 401 NETHGHVGADLAAL 414 (489)
T ss_dssp HTCTTCCHHHHHHH
T ss_pred HHccCCcHHHHHHH
Confidence 88877555444444
No 53
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.45 E-value=3.2e-13 Score=157.40 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=129.1
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
..+++||.|.++.+++|++++.-.+.. .-|..+++.+|||||||||||++|+++|+++|..++++++++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l----- 274 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI----- 274 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH-----
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh-----
Confidence 467899999999999999887643322 1133445899999999999999999999999999999987641
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHHhcC-
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRST- 292 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~~~~- 292 (666)
.+..+......++..++.+... .|.||+|||+|.+... ..-.++...|+..+..-
T Consensus 275 ------~sk~~gese~~lr~lF~~A~~~------------~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 275 ------MSKLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp ------HSSCTTHHHHHHHHHHHHHTTS------------CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC
T ss_pred ------hcccchHHHHHHHHHHHHHHHc------------CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc
Confidence 1122233445667777777543 4789999999976431 11233434444444332
Q ss_pred -CCceEEEEecCCCCCCccchhhhhhHHHHHHhhc--CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 005987 293 -HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (666)
Q Consensus 293 -~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~--r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~ 369 (666)
..+++ ++..++..+..| ..|.|+ .-..|.|..|+.....++|+..+....+. ++..+..||..+.
T Consensus 337 ~~~~V~-VIaaTN~~d~LD----------~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 337 QRAHVI-VMAATNRPNSID----------PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETH 404 (806)
T ss_dssp GGGCEE-EEEECSSTTTSC----------TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCC
T ss_pred ccCCEE-EEEecCChhhcC----------HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcC
Confidence 22343 444444443333 222221 24579999999999999998766543322 2234678888765
Q ss_pred C----cHHHHHHHH
Q 005987 370 G----DIRQAITSL 379 (666)
Q Consensus 370 G----DIR~AIn~L 379 (666)
| ||...++..
T Consensus 405 GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 405 GHVGADLAALCSEA 418 (806)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 4 676655543
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=5e-13 Score=157.19 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=135.0
Q ss_pred CCCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------
Q 005987 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---------- 202 (666)
Q Consensus 133 ~~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---------- 202 (666)
......|+++|+|.++++++|++..++.+..+|... ..+.+||+||||||||++|+.+|+.+
T Consensus 170 ~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~ 241 (758)
T 1r6b_X 170 ENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_dssp CSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred HHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 345678999999999999999999999998887642 12579999999999999999999987
Q ss_pred CCcEEEEcCCCchhhhhhhhcccCCcccc-chhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh----H
Q 005987 203 GARLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----A 277 (666)
Q Consensus 203 g~~viE~nasd~~~~~e~l~~~~~g~~~~-s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~----~ 277 (666)
+..++.++.... ..|..+. .....+..+++.+... .+.||+|||++.+.+.. .
T Consensus 242 ~~~~~~~~~~~l----------~~~~~~~g~~e~~l~~~~~~~~~~------------~~~iL~IDEi~~l~~~~~~~~~ 299 (758)
T 1r6b_X 242 DCTIYSLDIGSL----------LAGTKYRGDFEKRFKALLKQLEQD------------TNSILFIDEIHTIIGAGAASGG 299 (758)
T ss_dssp TCEEEECCCC-------------CCCCCSSCHHHHHHHHHHHHSSS------------SCEEEEETTTTTTTTSCCSSSC
T ss_pred CCEEEEEcHHHH----------hccccccchHHHHHHHHHHHHHhc------------CCeEEEEechHHHhhcCCCCcc
Confidence 455555543321 1122222 2223455555554321 25799999999873210 0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hC
Q 005987 278 FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQ 353 (666)
Q Consensus 278 ~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~ 353 (666)
...+.+.|..+++.+.. .+|.+++.. .....+. +...|.+ |+..|.|.+|+.++...+|..++.. .+
T Consensus 300 ~~~~~~~L~~~l~~~~~-~~I~at~~~------~~~~~~~-~d~aL~~-Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~ 370 (758)
T 1r6b_X 300 QVDAANLIKPLLSSGKI-RVIGSTTYQ------EFSNIFE-KDRALAR-RFQKIDITEPSIEETVQIINGLKPKYEAHHD 370 (758)
T ss_dssp HHHHHHHHSSCSSSCCC-EEEEEECHH------HHHCCCC-CTTSSGG-GEEEEECCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCe-EEEEEeCch------HHhhhhh-cCHHHHh-CceEEEcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 12233344444444433 222233210 0001111 1122223 5789999999999999999988865 67
Q ss_pred CCCCHHHHHHHHHHcCCcH------HHHHHHHHHHh
Q 005987 354 YSLSTEQIDLVAQASGGDI------RQAITSLQFSS 383 (666)
Q Consensus 354 i~v~~~~l~~Ia~~s~GDI------R~AIn~LQf~~ 383 (666)
+.+++++++.++..+.|.+ ..++..+.-++
T Consensus 371 v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~ 406 (758)
T 1r6b_X 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHH
Confidence 8899999999998876632 35666554443
No 55
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.42 E-value=2.2e-13 Score=130.35 Aligned_cols=132 Identities=14% Similarity=0.267 Sum_probs=85.8
Q ss_pred CCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------CC
Q 005987 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (666)
Q Consensus 135 ~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g~ 204 (666)
....|.++|+|.++++++|++..++.+..++.. +. .+.+||+||||||||++++.+|+++ +.
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------~~--~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~ 79 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSR------RT--KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGR 79 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------SS--SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTC
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhC------CC--CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCC
Confidence 356799999999999999999999999888864 21 2578999999999999999999997 66
Q ss_pred cEEEEcCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCc-----chhHH
Q 005987 205 RLYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN-----GRTAF 278 (666)
Q Consensus 205 ~viE~nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~-----~~~~~ 278 (666)
.++.++... .. .+..+ ......+..++..+... +.+.+|+|||++.+. ... .
T Consensus 80 ~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vl~iDe~~~l~~~~~~~~~-~ 137 (187)
T 2p65_A 80 KLVSLDLSS------LI----AGAKYRGDFEERLKSILKEVQDA-----------EGQVVMFIDEIHTVVGAGAVAEG-A 137 (187)
T ss_dssp EEEEECHHH------HH----HHCCSHHHHHHHHHHHHHHHHHT-----------TTSEEEEETTGGGGSSSSSSCTT-S
T ss_pred eEEEEeHHH------hh----cCCCchhHHHHHHHHHHHHHHhc-----------CCceEEEEeCHHHhccccccccc-c
Confidence 666655321 00 00001 11122344455554332 135699999999875 210 0
Q ss_pred HHHHHHHHHHHhcCCCce
Q 005987 279 ERLRQCLLLLVRSTHIPT 296 (666)
Q Consensus 279 ~~l~~~L~~l~~~~~~Pi 296 (666)
..+.+.|..+++.....+
T Consensus 138 ~~~~~~l~~~~~~~~~~i 155 (187)
T 2p65_A 138 LDAGNILKPMLARGELRC 155 (187)
T ss_dssp CCTHHHHHHHHHTTCSCE
T ss_pred hHHHHHHHHHHhcCCeeE
Confidence 123344555556555433
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.41 E-value=4.1e-13 Score=157.94 Aligned_cols=197 Identities=19% Similarity=0.238 Sum_probs=128.1
Q ss_pred CCCCccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----------C
Q 005987 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------G 203 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----------g 203 (666)
.....|+++|+|..+++++|+++.++.+..+|.. .. .+.+||+||||||||++|+++|+.+ +
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------RT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------SS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------CC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 3567899999999999999999999999999875 11 2579999999999999999999997 6
Q ss_pred CcEEEEcCCCchhhhhhhhcccCCccc-cchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHH
Q 005987 204 ARLYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (666)
Q Consensus 204 ~~viE~nasd~~~~~e~l~~~~~g~~~-~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~ 282 (666)
..++.++. |..| ......+..++..+... .+.||||| . . ....
T Consensus 237 ~~~~~~~~---------------g~~~~G~~e~~l~~~~~~~~~~------------~~~iLfiD---~--~----~~~~ 280 (758)
T 3pxi_A 237 KRVMTLDM---------------GTKYRGEFEDRLKKVMDEIRQA------------GNIILFID---A--A----IDAS 280 (758)
T ss_dssp CCEECC-------------------------CTTHHHHHHHHHTC------------CCCEEEEC---C-----------
T ss_pred CeEEEecc---------------cccccchHHHHHHHHHHHHHhc------------CCEEEEEc---C--c----hhHH
Confidence 66666554 1111 11122455566665432 25699999 1 1 1123
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH----hCCCCCH
Q 005987 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLST 358 (666)
Q Consensus 283 ~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~----e~i~v~~ 358 (666)
+.|...++.+. +.+|.+. +... +...+. +...+.+ |+..|.|.+|+.+++.++|+.++.. .++.+++
T Consensus 281 ~~L~~~l~~~~--v~~I~at-~~~~----~~~~~~-~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~ 351 (758)
T 3pxi_A 281 NILKPSLARGE--LQCIGAT-TLDE----YRKYIE-KDAALER-RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITD 351 (758)
T ss_dssp ---CCCTTSSS--CEEEEEC-CTTT----THHHHT-TCSHHHH-SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCH
T ss_pred HHHHHHHhcCC--EEEEeCC-ChHH----HHHHhh-ccHHHHh-hCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 33444455443 3333332 2211 111111 2223333 6889999999999999999988766 6788999
Q ss_pred HHHHHHHHHcCCcH------HHHHHHHHHHh
Q 005987 359 EQIDLVAQASGGDI------RQAITSLQFSS 383 (666)
Q Consensus 359 ~~l~~Ia~~s~GDI------R~AIn~LQf~~ 383 (666)
+++..++..+.+.+ +.||..|.-++
T Consensus 352 ~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 352 DAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp HHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 99999998865443 56777666554
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.41 E-value=1.3e-12 Score=138.07 Aligned_cols=207 Identities=12% Similarity=0.150 Sum_probs=130.2
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchh
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~ 216 (666)
..|+++|+|..+.+++|++..++.+..++.. + +.+||+||||||||++|+++|+.++..+..++......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~------~----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~ 84 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICT------G----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH------T----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHc------C----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 3599999999999999999999999888775 2 47999999999999999999999999888877632111
Q ss_pred hhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC----
Q 005987 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST---- 292 (666)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~---- 292 (666)
..+.+.... +... ...+... .+.- ...||+|||++.+... .+..|...++..
T Consensus 85 ~~~l~g~~~----~~~~----------~~~~~~~----~g~l-~~~vl~iDEi~~~~~~-----~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 85 PSDLIGTMI----YNQH----------KGNFEVK----KGPV-FSNFILADEVNRSPAK-----VQSALLECMQEKQVTI 140 (331)
T ss_dssp HHHHHEEEE----EETT----------TTEEEEE----ECTT-CSSEEEEETGGGSCHH-----HHHHHHHHHHHSEEEE
T ss_pred hhhcCCcee----ecCC----------CCceEec----cCcc-cccEEEEEccccCCHH-----HHHHHHHHHhcCceee
Confidence 111111000 0000 0000000 0000 1259999999987543 233344444432
Q ss_pred -------CCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHh-------------
Q 005987 293 -------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE------------- 352 (666)
Q Consensus 293 -------~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e------------- 352 (666)
..+.+++++. +.....+ ... + ...+++|+ ...+.|.+|+.++..++|++.+..+
T Consensus 141 ~g~~~~~~~~~~viat~-np~~~~~-~~~-l--~~~l~~Rf-~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 214 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQ-NPVEQEG-TYP-L--PEAQVDRF-MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKND 214 (331)
T ss_dssp TTEEEECCSSCEEEEEE-CTTCCSC-CCC-C--CHHHHTTS-SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHH
T ss_pred CCEEEECCCCEEEEEec-CCCcccC-ccc-C--CHHHHhhe-eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHH
Confidence 2234444433 2111100 000 1 12333431 3369999999999999999887642
Q ss_pred ---------CCCCCHHHHHHHHHHc-----CC---------------cHHHHHHHHHHHh
Q 005987 353 ---------QYSLSTEQIDLVAQAS-----GG---------------DIRQAITSLQFSS 383 (666)
Q Consensus 353 ---------~i~v~~~~l~~Ia~~s-----~G---------------DIR~AIn~LQf~~ 383 (666)
++.+++++++.|+..+ .| +.|.+++.++.+.
T Consensus 215 i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~ 274 (331)
T 2r44_A 215 VLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAK 274 (331)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHH
Confidence 6778999999998754 23 5999998887764
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.41 E-value=4.8e-15 Score=152.02 Aligned_cols=209 Identities=15% Similarity=0.210 Sum_probs=121.8
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCCC-----CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~-----g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
.++.+.++++|+|++..++.+..++.. +.... +...++.+||+||||||||++|+++|++++..++.+++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 456788999999999998888887763 21100 111225699999999999999999999999888887766421
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHH----------HHHHHH
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE----------RLRQCL 285 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~----------~l~~~L 285 (666)
. ...|.... .+..+++.+... .+.||+|||+|.+....... .....|
T Consensus 82 ~-------~~~~~~~~----~~~~~~~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~l 138 (268)
T 2r62_A 82 E-------MFVGLGAS----RVRDLFETAKKQ------------APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQL 138 (268)
T ss_dssp T-------SCSSSCSS----SSSTTHHHHHHS------------CSCEEEESCGGGTTC----------CCCSCSSTTTT
T ss_pred H-------hhcchHHH----HHHHHHHHHHhc------------CCeEEEEeChhhhcccccccccCCCchhHHHHHHHH
Confidence 0 11111111 112233333321 24699999999875431100 011112
Q ss_pred HHHHhc---CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcC-eeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 005987 286 LLLVRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (666)
Q Consensus 286 ~~l~~~---~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r-~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l 361 (666)
...+.. ...++++|++. +.....+ ..++++.| ...|.|.+|+.++..++|+..+....+. ++..+
T Consensus 139 l~~l~~~~~~~~~v~vi~tt-n~~~~ld---------~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~ 207 (268)
T 2r62_A 139 LAEMDGFGSENAPVIVLAAT-NRPEILD---------PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNL 207 (268)
T ss_dssp TTTTTCSSCSCSCCEEEECB-SCCTTSC---------GGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCT
T ss_pred HHHhhCcccCCCCEEEEEec-CCchhcC---------HhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCH
Confidence 222221 12234554443 3222111 11122112 3578999999999999998887543322 22235
Q ss_pred HHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 362 DLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
+.|+..+.| ||+.+++...+.+.
T Consensus 208 ~~la~~~~g~~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 208 QEVAKLTAGLAGADLANIINEAALLAG 234 (268)
T ss_dssp TTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 667766665 88888888777665
No 59
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.40 E-value=7.4e-12 Score=135.66 Aligned_cols=217 Identities=15% Similarity=0.243 Sum_probs=128.4
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHH-HHhhcCCCCCCCccEEEE--ECCCCchHHHHHHHHHHHc---------CCc
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWF-EERLGDSKDKFSTNVLVI--TGQAGVGKTATVRQIASHL---------GAR 205 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL-~~~~~~~~g~~~~k~LLL--~GPpG~GKTtla~~LAkel---------g~~ 205 (666)
++..+|.| ++++|+++.++.|..++ ....... +.. ++.++| +||||+|||++++.+++++ ++.
T Consensus 14 ~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~-~~~-~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEAEALARIYLNRLLSGA-GLS-DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 88 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSS-CBC-CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCC-CCC-CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCcee
Confidence 34556777 56799999999999999 7655310 022 258999 9999999999999999887 556
Q ss_pred EEEEcCCCch----hhhhhhhcccCCcc--ccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc-----
Q 005987 206 LYEWDTPTPT----IWQEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG----- 274 (666)
Q Consensus 206 viE~nasd~~----~~~e~l~~~~~g~~--~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~----- 274 (666)
++.+++.... .+...+........ ..+....+..+...+... +.+.||+|||++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~llvlDe~~~l~~~~~~~ 157 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-----------NHYLLVILDEFQSMLSSPRIA 157 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-----------TCEEEEEEESTHHHHSCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEEeCHHHHhhccCcc
Confidence 7777753211 11111111100000 001111122222222111 2367999999997643
Q ss_pred hhHHHHHHHHHHHHHhcC---C--CceEEEEecCCCCCCccchhhhhhHHH----HHHhhcCeeEEEeCCCCHHHHHHHH
Q 005987 275 RTAFERLRQCLLLLVRST---H--IPTAVVLTECGKADSVDSTAQSFEELQ----SILVDAGARKVALNPITNGSIKRTL 345 (666)
Q Consensus 275 ~~~~~~l~~~L~~l~~~~---~--~PiViIit~~~~~~s~d~~~r~l~~L~----s~L~r~r~~~I~F~p~s~~~i~kiL 345 (666)
...+.. |...+... . .++.+|++.... .....+. ...++. ...|.|.|++.+++.++|
T Consensus 158 ~~~l~~----l~~~~~~~~~~~~~~~v~lI~~~~~~--------~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll 224 (412)
T 1w5s_A 158 AEDLYT----LLRVHEEIPSRDGVNRIGFLLVASDV--------RALSYMREKIPQVESQI-GFKLHLPAYKSRELYTIL 224 (412)
T ss_dssp HHHHHH----HHTHHHHSCCTTSCCBEEEEEEEEET--------HHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHH
T ss_pred hHHHHH----HHHHHHhcccCCCCceEEEEEEeccc--------cHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHH
Confidence 122222 22222221 2 444444332110 1111121 222232 334999999999999999
Q ss_pred HHHHHHhC--CCCCHHHHHHHHHHcC------CcHHHHHHHHHHHh
Q 005987 346 SKICRQEQ--YSLSTEQIDLVAQASG------GDIRQAITSLQFSS 383 (666)
Q Consensus 346 ~~I~~~e~--i~v~~~~l~~Ia~~s~------GDIR~AIn~LQf~~ 383 (666)
...+...+ ..++++++..|+..++ |++|.+++.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 225 EQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMAC 270 (412)
T ss_dssp HHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 88876543 3578999999999999 99999998887654
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.40 E-value=6.2e-12 Score=131.29 Aligned_cols=211 Identities=14% Similarity=0.174 Sum_probs=125.6
Q ss_pred ccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh---hhhhh
Q 005987 150 ELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI---WQEYM 221 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~---~~e~l 221 (666)
+++|++..++.|...+...... .+.+ +..++||+||||||||++|+++|+.+ +..++.++++.... ....+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNR-PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTS-CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCC-CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 5789999999999999875421 1122 22579999999999999999999998 45577777653211 11111
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC--------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-------- 293 (666)
........+. ....+...+.. . ...+|+|||++.+... .++.|..+++...
T Consensus 97 g~~~~~~~~~-~~~~~~~~~~~---~------------~~~vl~lDEi~~l~~~-----~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 97 GAPPGYVGYE-EGGQLTEAVRR---R------------PYSVILFDAIEKAHPD-----VFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp CCCTTSTTTT-TCCHHHHHHHH---C------------SSEEEEEETGGGSCHH-----HHHHHHHHHHHSEEECTTSCE
T ss_pred CCCCcccccc-ccchHHHHHHh---C------------CCeEEEEeChhhcCHH-----HHHHHHHHHhcCEEEcCCCCE
Confidence 1110000110 01122222211 1 2369999999987532 3334555555432
Q ss_pred ----CceEEEEecCCC---------CCCccchhhhh-----hHH-HHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHh-
Q 005987 294 ----IPTAVVLTECGK---------ADSVDSTAQSF-----EEL-QSILVDAGA-RKVALNPITNGSIKRTLSKICRQE- 352 (666)
Q Consensus 294 ----~PiViIit~~~~---------~~s~d~~~r~l-----~~L-~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e- 352 (666)
..++|++++... ....+.....+ ..+ ..++.| + ..+.|.|++.+++..++...+...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R--~~~~~~~~p~~~~~~~~i~~~~l~~~~ 233 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNR--LDEIVVFRPLTKEQIRQIVEIQMSYLR 233 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHTHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhc--CCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 223444444310 00000000000 111 233333 5 789999999999999998877652
Q ss_pred --------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhc
Q 005987 353 --------QYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (666)
Q Consensus 353 --------~i~v~~~~l~~Ia~~s~---GDIR~AIn~LQf~~~ 384 (666)
.+.+++++++.|+..+- |++|...+.++-++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 234 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 35689999999999764 999988888887664
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.36 E-value=8e-12 Score=130.26 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=90.3
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~ 256 (666)
+++.+||+||||||||++|+++|++++..++.+++++. ..... ......+...+..+.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l-------~~~~~----g~~~~~i~~~f~~a~~~~~------- 96 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL-------ESGNA----GEPAKLIRQRYREAAEIIR------- 96 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH-------HCC-------HHHHHHHHHHHHHHHHHT-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh-------hhccC----chhHHHHHHHHHHHHHHHh-------
Confidence 34789999999999999999999999999999986531 01011 1122334455555421110
Q ss_pred CCCCceEEEEeCCCCCcchhH--------HHHHHHHHHHHHhc--------------CCCceEEEEecCCCCCCccchhh
Q 005987 257 ESKSSAILLIDDLPVTNGRTA--------FERLRQCLLLLVRS--------------THIPTAVVLTECGKADSVDSTAQ 314 (666)
Q Consensus 257 ~~~~~~IIlIDEid~l~~~~~--------~~~l~~~L~~l~~~--------------~~~PiViIit~~~~~~s~d~~~r 314 (666)
...+.||+|||+|.+..+.. -..+...|..+++. ....+||++++ .....+
T Consensus 97 -~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN--~~~~ld---- 169 (293)
T 3t15_A 97 -KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN--DFSTLY---- 169 (293)
T ss_dssp -TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECS--SCCC------
T ss_pred -cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecC--CcccCC----
Confidence 12467999999997654211 11344556666541 11223333333 221111
Q ss_pred hhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHH
Q 005987 315 SFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIR 373 (666)
Q Consensus 315 ~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~-s~GDIR 373 (666)
.++++..|+..+-+ .|+.++..++++.++...+ ++.+.+..++.. ++.||.
T Consensus 170 -----~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 170 -----APLIRDGRMEKFYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp -----CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred -----HHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 11222123444334 4599999999998887665 456666666655 445554
No 62
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.35 E-value=9.9e-13 Score=153.27 Aligned_cols=207 Identities=14% Similarity=0.199 Sum_probs=120.0
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
+.+++++.|.+...++|.+.+.-.+.. .-|..+++.+|||||||||||.+|+++|.+++..++.+..++ ..
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~--l~-- 548 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE--LL-- 548 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH--HH--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch--hh--
Confidence 356788999999888888776532221 113344578999999999999999999999999999887654 11
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchh---------HHHHHHHHHHHHHh
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLRQCLLLLVR 290 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~---------~~~~l~~~L~~l~~ 290 (666)
+..+......+++++..++.. .|+||+|||+|.+.... ...++...|+..++
T Consensus 549 -------s~~vGese~~vr~lF~~Ar~~------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~md 609 (806)
T 3cf2_A 549 -------TMWFGESEANVREIFDKARQA------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp -------TTTCSSCHHHHHHHHHHHHTT------------CSEEEECSCGGGCC--------------CHHHHHHHHHHH
T ss_pred -------ccccchHHHHHHHHHHHHHHc------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHh
Confidence 111223345678888888654 37899999999764321 12234444555555
Q ss_pred cC-CCceEEEEecCCCCCCccchhhhhhHHHHHHhh-cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-
Q 005987 291 ST-HIPTAVVLTECGKADSVDSTAQSFEELQSILVD-AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA- 367 (666)
Q Consensus 291 ~~-~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r-~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~- 367 (666)
.- ...-|++++.++.++..| .++++. +.-..|.|..|+.+...++|+..+.+..+. ++-.++.||+.
T Consensus 610 g~~~~~~V~vi~aTN~p~~lD---------~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t 679 (806)
T 3cf2_A 610 GMSTKKNVFIIGATNRPDIID---------PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMT 679 (806)
T ss_dssp SSCSSSSEEEECC-CCSSSSC---------HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------
T ss_pred CCCCCCCEEEEEeCCCchhCC---------HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhC
Confidence 32 122355566666554333 222320 124579999999999999888776544332 22235666654
Q ss_pred ---cCCcHHHHHHHHHHHhc
Q 005987 368 ---SGGDIRQAITSLQFSSL 384 (666)
Q Consensus 368 ---s~GDIR~AIn~LQf~~~ 384 (666)
|+.||..+++.-.+.+.
T Consensus 680 ~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 680 NGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ------CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 66799998887666664
No 63
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.34 E-value=1.3e-11 Score=126.35 Aligned_cols=206 Identities=15% Similarity=0.203 Sum_probs=114.1
Q ss_pred CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCCchh--hhhhh
Q 005987 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTI--WQEYM 221 (666)
Q Consensus 147 sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd~~~--~~e~l 221 (666)
+|++++|+...++.+...++.... .+ ..+||+||||||||++|+++++.+. ..++.++++.... ....+
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~-----~~-~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP-----LD-KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT-----SC-SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC-----CC-CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 678899999999999988886532 11 4799999999999999999999874 5688888764210 00000
Q ss_pred hcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC--------
Q 005987 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (666)
Q Consensus 222 ~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-------- 293 (666)
.....|. +..........++.+ .+.+|+|||++.+... .+..|..+++...
T Consensus 78 ~g~~~~~-~~g~~~~~~~~l~~a---------------~~~~l~lDEi~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 78 FGHEAGA-FTGAQKRHPGRFERA---------------DGGTLFLDELATAPMM-----VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HCCC----------CCCCHHHHT---------------TTSEEEEESGGGSCHH-----HHHHHHHHHHHCEECCCCC--
T ss_pred cCCcccc-cccccccccchhhhc---------------CCcEEEEechHhcCHH-----HHHHHHHHHHhCCeecCCCcc
Confidence 0000000 000000000001110 1349999999988642 2333445554321
Q ss_pred ----CceEEEEecCCCCCCccch-hhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHH----HHHHHHhCC----CCCH
Q 005987 294 ----IPTAVVLTECGKADSVDST-AQSFEELQSILVDAGARKVALNPITN--GSIKRTL----SKICRQEQY----SLST 358 (666)
Q Consensus 294 ----~PiViIit~~~~~~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL----~~I~~~e~i----~v~~ 358 (666)
...||++++.... +.. ...+. ..++.|.....|.++|+.. +++..++ .+.+...+. .+++
T Consensus 137 ~~~~~~~iI~atn~~~~---~~~~~~~~~--~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLP---AMVNEGTFR--ADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE 211 (265)
T ss_dssp CEECCCEEEEEESSCHH---HHHHHTSSC--HHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH
T ss_pred cccCCeEEEEecCcCHH---HHHHcCCcc--HHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 1234444442110 000 00010 2333343345788999876 5665554 444444554 6899
Q ss_pred HHHHHHHHHc-CCcHHHHHHHHHHHhc
Q 005987 359 EQIDLVAQAS-GGDIRQAITSLQFSSL 384 (666)
Q Consensus 359 ~~l~~Ia~~s-~GDIR~AIn~LQf~~~ 384 (666)
++++.|.... .|++|...+.++.++.
T Consensus 212 ~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 212 RARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999998775 8999999999988764
No 64
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.33 E-value=1.2e-11 Score=125.82 Aligned_cols=208 Identities=16% Similarity=0.247 Sum_probs=119.9
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhc-----CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~-----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+..+.+.++++++|.+....++++....... ...-..+ +.++|+|||||||||+++++|..++...+.++..+.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4566778999999999888888776553211 0011223 469999999999999999999999877777764321
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCL 285 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~~L 285 (666)
.....+ .....+..+++.+.. ..+.++++||++.+... .........+
T Consensus 86 -------~~~~~~----~~~~~i~~~~~~~~~------------~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 86 -------VEMFVG----VGAARVRDLFETAKR------------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp -------HHSCTT----HHHHHHHHHHHHHTT------------SSSEEEEEETHHHHHC---------CHHHHHHHHHH
T ss_pred -------HHHHhh----HHHHHHHHHHHHHHh------------cCCeEEEehhhhhhhcccCccccccchHHHHHHHHH
Confidence 000111 112233444444421 12569999999754211 1111222223
Q ss_pred HHHHhcCC--CceEEEEecCCCCCCccchhhhhhHHHHHHhhc-CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HH
Q 005987 286 LLLVRSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QI 361 (666)
Q Consensus 286 ~~l~~~~~--~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~-~l 361 (666)
...+.... ..++++++ ++.+...| ..++++. ....|.|.+|+.++..++|+..+. +..++++ .+
T Consensus 143 l~~l~g~~~~~~~i~~a~-t~~p~~ld---------~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~ 210 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAA-TNRPDILD---------PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDL 210 (254)
T ss_dssp HHHHHTCCTTCCEEEEEE-ESCGGGSC---------GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCH
T ss_pred HHHHhCCCCCCCEEEEEc-cCCchhCC---------HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCH
Confidence 33333332 23343333 33222111 1122211 245799999999999999987764 3444443 37
Q ss_pred HHHHHHcCC----cHHHHHHHHHHHh
Q 005987 362 DLVAQASGG----DIRQAITSLQFSS 383 (666)
Q Consensus 362 ~~Ia~~s~G----DIR~AIn~LQf~~ 383 (666)
..|+..+.| |++.+++..-..+
T Consensus 211 ~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 211 ALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 889988877 5666666554444
No 65
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.32 E-value=1.2e-11 Score=137.59 Aligned_cols=211 Identities=16% Similarity=0.249 Sum_probs=124.3
Q ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHhhc-----CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 137 ~~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~-----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+|.+. .+.+|+|++|.+..+.++++.+..... ......+ +.++|+||||||||++++++|.+++..++.++.
T Consensus 20 ~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip-~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 20 RVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp EEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCC-SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred eeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCC-ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 456666 788999999999998888887663211 1112233 579999999999999999999999988888887
Q ss_pred CCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcc---------hhHHHHHH
Q 005987 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---------RTAFERLR 282 (666)
Q Consensus 212 sd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~---------~~~~~~l~ 282 (666)
++.. ....| .....+..+++.+. ...+.+++|||++.+.. ........
T Consensus 98 ~~~~-------~~~~g----~~~~~v~~lfq~a~------------~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l 154 (499)
T 2dhr_A 98 SDFV-------EMFVG----VGAARVRDLFETAK------------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 154 (499)
T ss_dssp GGGT-------SSCTT----HHHHHHHHHTTTSS------------SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH
T ss_pred hHHH-------Hhhhh----hHHHHHHHHHHHHH------------hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH
Confidence 5411 00011 11112222222111 12357999999986532 11112222
Q ss_pred HHHHHHHhcCC--CceEEEEecCCCCCCccchhhhhhHHHHHHhhc-CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH
Q 005987 283 QCLLLLVRSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (666)
Q Consensus 283 ~~L~~l~~~~~--~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~ 359 (666)
..|...+.... ..++++ +.++.+...| ..++++. ....|.|.+|+..+..++|+..+. ++.++++
T Consensus 155 ~~LL~~Ldg~~~~~~vivi-Aatn~p~~LD---------~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~d 222 (499)
T 2dhr_A 155 NQLLVEMDGFEKDTAIVVM-AATNRPDILD---------PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAED 222 (499)
T ss_dssp HHHHHHGGGCCSSCCCEEE-ECCSCGGGSC---------TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCS
T ss_pred HHHHHHhcccccCccEEEE-EecCChhhcC---------cccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChH
Confidence 22333333322 234444 3333322111 1112211 235799999999999998876653 3455544
Q ss_pred -HHHHHHHHcCC----cHHHHHHHHHHHhc
Q 005987 360 -QIDLVAQASGG----DIRQAITSLQFSSL 384 (666)
Q Consensus 360 -~l~~Ia~~s~G----DIR~AIn~LQf~~~ 384 (666)
.+..|+..+.| |++.+++..-..+.
T Consensus 223 v~l~~lA~~t~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 223 VDLALLAKRTPGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp STTHHHHTTSCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 37888988877 56667766555554
No 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.32 E-value=9.9e-12 Score=133.93 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=122.0
Q ss_pred ccccCHHHHHHHHHHHHHhhcCC----------------------CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDS----------------------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~----------------------~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.++|++..++.|..++..+.... ....+...+||+||||||||++|+++|+.++..++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999998883211100 00112357999999999999999999999999999
Q ss_pred EEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH---------H
Q 005987 208 EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---------F 278 (666)
Q Consensus 208 E~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~---------~ 278 (666)
.+++..... ....|.. ....+..++...... + ....+.||+|||++.+..... .
T Consensus 102 ~~~~~~~~~------~~~~g~~---~~~~~~~~~~~~~~~--~------~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 102 ISDATSLTE------AGYVGED---VENILTRLLQASDWN--V------QKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp EEEGGGCC-----------------CTHHHHHHHHHTTTC--H------HHHTTSEEEEETGGGC--------------C
T ss_pred Eecchhhhh------cCcCCcc---HHHHHHHHHhhccch--h------hhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 887653110 0001111 112233333221100 0 001245999999998754300 0
Q ss_pred HHHHHHHHHHHhcC----------------------CCceEEEEecCCC----------------CCCcc------chhh
Q 005987 279 ERLRQCLLLLVRST----------------------HIPTAVVLTECGK----------------ADSVD------STAQ 314 (666)
Q Consensus 279 ~~l~~~L~~l~~~~----------------------~~PiViIit~~~~----------------~~s~d------~~~r 314 (666)
..+++.|+.+++.. ..++++++++... ..... ...+
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~ 244 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 244 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHh
Confidence 11455566666633 1123333332100 00000 0000
Q ss_pred --------hhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHH----HHH----H-----hCCCCCHHHHHHHHHHcC---C
Q 005987 315 --------SFEELQSILVDAGARKVALNPITNGSIKRTLSK----ICR----Q-----EQYSLSTEQIDLVAQASG---G 370 (666)
Q Consensus 315 --------~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~----I~~----~-----e~i~v~~~~l~~Ia~~s~---G 370 (666)
...-..+++.|. ...|.|+|++.+++..++.. ++. . .++.+++++++.|+..+. |
T Consensus 245 ~~~~~~l~~~~~~p~l~~R~-~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 323 (376)
T 1um8_A 245 LVQTHDLVTYGLIPELIGRL-PVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT 323 (376)
T ss_dssp GCCHHHHHHTTCCHHHHTTC-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHhhcCCChHHhcCC-CceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhccccc
Confidence 000113444442 26799999999999998862 222 1 135689999999999866 9
Q ss_pred cHHHHHHHHHHHhc
Q 005987 371 DIRQAITSLQFSSL 384 (666)
Q Consensus 371 DIR~AIn~LQf~~~ 384 (666)
++|.+.+.|+-++.
T Consensus 324 ~~R~L~~~le~~~~ 337 (376)
T 1um8_A 324 GARGLRAIIEDFCL 337 (376)
T ss_dssp TGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999988765
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.30 E-value=1.2e-11 Score=139.90 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=119.3
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhh
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e 219 (666)
..+.+..-.++++|.++....+..++.-.... ...+..+++|+|||||||||+++++|..++.....++........+
T Consensus 72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~--~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKLT--KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHS--SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 33333333466899999988887776532211 1223468999999999999999999999999999888765221111
Q ss_pred hhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC------
Q 005987 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------ 293 (666)
Q Consensus 220 ~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~------ 293 (666)
........+ ......+...+..+. ....||+|||++.+.... .+..++.|+..++..+
T Consensus 150 ~~g~~~~~i--g~~~~~~~~~~~~a~-------------~~~~vl~lDEid~l~~~~-~~~~~~~LL~~ld~~~~~~~~~ 213 (543)
T 3m6a_A 150 IRGHRRTYV--GAMPGRIIQGMKKAG-------------KLNPVFLLDEIDKMSSDF-RGDPSSAMLEVLDPEQNSSFSD 213 (543)
T ss_dssp ----------------CHHHHHHTTC-------------SSSEEEEEEESSSCC----------CCGGGTCTTTTTBCCC
T ss_pred hhhHHHHHh--ccCchHHHHHHHHhh-------------ccCCEEEEhhhhhhhhhh-ccCHHHHHHHHHhhhhcceeec
Confidence 100000000 000011111111110 122399999999886431 1112333444443211
Q ss_pred ---------CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH-----h-----CC
Q 005987 294 ---------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ-----E-----QY 354 (666)
Q Consensus 294 ---------~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~-----e-----~i 354 (666)
..+++|++ ++... ... .++++ |+..|.|.+|+.++...++.+.+.. . ++
T Consensus 214 ~~~~~~~~~~~v~iI~t-tN~~~------~l~---~aL~~--R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i 281 (543)
T 3m6a_A 214 HYIEETFDLSKVLFIAT-ANNLA------TIP---GPLRD--RMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNL 281 (543)
T ss_dssp SSSCCCCBCSSCEEEEE-CSSTT------TSC---HHHHH--HEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGC
T ss_pred ccCCeeecccceEEEec-cCccc------cCC---HHHHh--hcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 11334433 22211 111 23333 4789999999999999998886532 2 45
Q ss_pred CCCHHHHHHHHHHcC--CcHHHHHHHHHHHhc
Q 005987 355 SLSTEQIDLVAQASG--GDIRQAITSLQFSSL 384 (666)
Q Consensus 355 ~v~~~~l~~Ia~~s~--GDIR~AIn~LQf~~~ 384 (666)
.++++++..|+.... |.+|..-+.++-+|.
T Consensus 282 ~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 282 QLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp EECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 678999999988654 677777666665553
No 68
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.29 E-value=5.3e-11 Score=122.79 Aligned_cols=208 Identities=16% Similarity=0.230 Sum_probs=118.4
Q ss_pred ccccCCCCccccccCHHHHHHHHHHHHHhhc-----CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~-----~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
+....+.++++++|.+....++++....... ...-..+ +.++|+|||||||||+++++|..++..++.++..+.
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3344678999999999988888876653211 0011223 459999999999999999999999877777764321
Q ss_pred hhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHHHH
Q 005987 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCL 285 (666)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~~L 285 (666)
.....+ .....+..+++.+... .+.++++||++.+... .........+
T Consensus 110 -------~~~~~~----~~~~~i~~~~~~~~~~------------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l 166 (278)
T 1iy2_A 110 -------VEMFVG----VGAARVRDLFETAKRH------------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 166 (278)
T ss_dssp -------HHSTTT----HHHHHHHHHHHHHHTS------------CSEEEEEETHHHHHCC--------CHHHHHHHHHH
T ss_pred -------HHHHhh----HHHHHHHHHHHHHHhc------------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHH
Confidence 000011 1122344444444321 2569999999754211 1111121222
Q ss_pred HHHHhcCC--CceEEEEecCCCCCCccchhhhhhHHHHHHhhc-CeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HH
Q 005987 286 LLLVRSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QI 361 (666)
Q Consensus 286 ~~l~~~~~--~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~-~l 361 (666)
...+..+. ..++++ +.++.+...| ..++++. ....|.|.+|+.++..++|+..+. +..++++ .+
T Consensus 167 l~~lsgg~~~~~~i~~-a~t~~p~~ld---------~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~ 234 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVM-AATNRPDILD---------PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDL 234 (278)
T ss_dssp HHHHTTCCTTCCEEEE-EEESCTTSSC---------HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCH
T ss_pred HHHHhCCCCCCCEEEE-EecCCchhCC---------HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCH
Confidence 22233222 233333 3333322211 2222211 245799999999999999987764 3444443 37
Q ss_pred HHHHHHcCCc----HHHHHHHHHHHh
Q 005987 362 DLVAQASGGD----IRQAITSLQFSS 383 (666)
Q Consensus 362 ~~Ia~~s~GD----IR~AIn~LQf~~ 383 (666)
..|+..+.|. |+.+++..-..+
T Consensus 235 ~~la~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 235 ALLAKRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8899888874 555555444433
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.26 E-value=8e-11 Score=138.38 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=127.4
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCC-CCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCc
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGL 228 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~-g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~ 228 (666)
+++|++..++.|...+........ .+.+...+||+||||||||++|+++|+.++..++.++++.... .+......|.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~--~~~~~~l~g~ 536 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME--RHTVSRLIGA 536 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS--SSCCSSSCCC
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc--hhhHhhhcCC
Confidence 478999999999998886543210 1112247999999999999999999999999999998765211 0000001111
Q ss_pred c--ccc--hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-----------
Q 005987 229 E--YTS--KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------- 293 (666)
Q Consensus 229 ~--~~s--~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~----------- 293 (666)
. |.. ....+... +... ++.||||||++.+.. .+++.|+.+++.++
T Consensus 537 ~~g~~g~~~~~~l~~~---~~~~------------~~~vl~lDEi~~~~~-----~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDA---VIKH------------PHAVLLLDEIEKAHP-----DVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp CSCSHHHHHTTHHHHH---HHHC------------SSEEEEEETGGGSCH-----HHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred CCCCcCccccchHHHH---HHhC------------CCcEEEEeCccccCH-----HHHHHHHHHhcCcEEEcCCCCEEec
Confidence 1 110 01112222 2211 246999999997753 24445666666542
Q ss_pred -CceEEEEecCCCCCCcc----ch-----hhhhh----HH-HHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHh-----
Q 005987 294 -IPTAVVLTECGKADSVD----ST-----AQSFE----EL-QSILVDAGA-RKVALNPITNGSIKRTLSKICRQE----- 352 (666)
Q Consensus 294 -~PiViIit~~~~~~s~d----~~-----~r~l~----~L-~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e----- 352 (666)
..+||++++........ +. ..... .+ .++++| + ..|.|+|++.+++..++...+.+.
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR--LDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhh--CCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12344444432111000 00 00000 11 234444 4 679999999999999999887642
Q ss_pred ----CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHhc
Q 005987 353 ----QYSLSTEQIDLVAQAS---GGDIRQAITSLQFSSL 384 (666)
Q Consensus 353 ----~i~v~~~~l~~Ia~~s---~GDIR~AIn~LQf~~~ 384 (666)
.+.+++++++.|+..+ ++++|...+.|+-.+.
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 3568999999999886 6668887777776654
No 70
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.24 E-value=9.7e-11 Score=124.48 Aligned_cols=165 Identities=13% Similarity=0.122 Sum_probs=112.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCc---EEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GAR---LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~---viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~ 252 (666)
+++||+||+|.||++++..+++.+ ++. +++++.. ..++++++.+...+..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~~plf-- 74 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN----------------------TDWNAIFSLCQAMSLF-- 74 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT----------------------CCHHHHHHHHHHHHHC--
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC----------------------CCHHHHHHHhcCcCCc--
Confidence 689999999999999999999976 331 2222210 1334555555433311
Q ss_pred CCCCCCCCceEEEEeCCCC-CcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEE
Q 005987 253 SIPGESKSSAILLIDDLPV-TNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKV 331 (666)
Q Consensus 253 s~~~~~~~~~IIlIDEid~-l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I 331 (666)
+ .++|++|||++. +... . .+.|..+++....-+++|+...... ..+...+.+ +.+.+ +|..+
T Consensus 75 ---~---~~kvvii~~~~~kl~~~-~----~~aLl~~le~p~~~~~~il~~~~~~-~~~~~~k~~---~~i~s--r~~~~ 137 (343)
T 1jr3_D 75 ---A---SRQTLLLLLPENGPNAA-I----NEQLLTLTGLLHDDLLLIVRGNKLS-KAQENAAWF---TALAN--RSVQV 137 (343)
T ss_dssp ---C---SCEEEEEECCSSCCCTT-H----HHHHHHHHTTCBTTEEEEEEESCCC-TTTTTSHHH---HHHTT--TCEEE
T ss_pred ---c---CCeEEEEECCCCCCChH-H----HHHHHHHHhcCCCCeEEEEEcCCCC-hhhHhhHHH---HHHHh--CceEE
Confidence 1 357999999998 6532 2 2345666665432233333322111 011112222 23322 59999
Q ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 005987 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 332 ~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~ 384 (666)
.|.+++..++.+.|.+++..+|+.+++++++.|++.++||+|.+++.|+-++.
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSL 190 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997775
No 71
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.23 E-value=3.8e-11 Score=128.77 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=48.9
Q ss_pred cccCHHHHHHHHHHHHHhhcC-------CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 151 LAVQRKKVEEVRAWFEERLGD-------SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~-------~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
++|++..++.|..++...... .....+.+.+||+||||||||++|+++|+.++..++.++++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 689999999999888533211 01112346899999999999999999999999999999865
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.23 E-value=9.6e-11 Score=137.74 Aligned_cols=199 Identities=16% Similarity=0.190 Sum_probs=119.3
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCC-CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNC 224 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~-g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~ 224 (666)
.+++|++..++.|...+........ ...+...+||+||||||||++|+++|+.+ +..++.++++....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~-------- 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME-------- 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS--------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc--------
Confidence 4588999999999999987543211 11122369999999999999999999998 67788888764110
Q ss_pred cCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-----------
Q 005987 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------- 293 (666)
Q Consensus 225 ~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~----------- 293 (666)
....+ ...+... +... +..||||||++.+.. .+++.|+.+++.+.
T Consensus 563 ---~~~~~-~~~l~~~---~~~~------------~~~vl~lDEi~~~~~-----~~~~~Ll~~le~g~~~~~~g~~~~~ 618 (758)
T 3pxi_A 563 ---KHSTS-GGQLTEK---VRRK------------PYSVVLLDAIEKAHP-----DVFNILLQVLEDGRLTDSKGRTVDF 618 (758)
T ss_dssp ---SCCCC----CHHH---HHHC------------SSSEEEEECGGGSCH-----HHHHHHHHHHHHSBCC-----CCBC
T ss_pred ---ccccc-cchhhHH---HHhC------------CCeEEEEeCccccCH-----HHHHHHHHHhccCeEEcCCCCEecc
Confidence 00000 1112111 2111 235999999997753 23344555555532
Q ss_pred -CceEEEEecCCCCCCccchhhhh-hHH-HHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHh---------CCCCCHHH
Q 005987 294 -IPTAVVLTECGKADSVDSTAQSF-EEL-QSILVDAGA-RKVALNPITNGSIKRTLSKICRQE---------QYSLSTEQ 360 (666)
Q Consensus 294 -~PiViIit~~~~~~s~d~~~r~l-~~L-~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e---------~i~v~~~~ 360 (666)
..+||++++..... .+.....+ ..+ ..++.| + ..|.|+|++.+++.+++...+... .+.+++++
T Consensus 619 ~~~~iI~ttn~~~~~-~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 695 (758)
T 3pxi_A 619 RNTILIMTSNVGASE-KDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAA 695 (758)
T ss_dssp TTCEEEEEESSSTTC-CHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHH
T ss_pred CCeEEEEeCCCChhh-HHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHH
Confidence 12445555432211 00000000 011 234443 5 799999999999999998887652 35689999
Q ss_pred HHHHHHH---cCCcHHHHHHHHHHH
Q 005987 361 IDLVAQA---SGGDIRQAITSLQFS 382 (666)
Q Consensus 361 l~~Ia~~---s~GDIR~AIn~LQf~ 382 (666)
++.|+.. -.|.+|..-+.++-.
T Consensus 696 ~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 696 KAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHHHHHhCCCCCCCChHHHHHHHHH
Confidence 9999875 346666665655543
No 73
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=1e-10 Score=120.65 Aligned_cols=207 Identities=12% Similarity=0.176 Sum_probs=114.3
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcC------CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhh
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGD------SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~------~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~ 217 (666)
...+++|+.|.+...++|++.+...+.. -.-..+ +.++|+|||||||||+++++|.+++...+.++.++..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~-- 81 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL-- 81 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH--
Confidence 3467899999999888888765422211 111223 5699999999999999999999999988888876411
Q ss_pred hhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhH------HHHHHHHHHHHHhc
Q 005987 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA------FERLRQCLLLLVRS 291 (666)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~------~~~l~~~L~~l~~~ 291 (666)
..........+..+++.+... .+.++++||++.+..... ..++...+...+..
T Consensus 82 ---------~~~~~~~~~~i~~vf~~a~~~------------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsg 140 (274)
T 2x8a_A 82 ---------NMYVGESERAVRQVFQRAKNS------------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDG 140 (274)
T ss_dssp ---------SSTTHHHHHHHHHHHHHHHHT------------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHT
T ss_pred ---------hhhhhHHHHHHHHHHHHHHhc------------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhc
Confidence 111111122344445544322 257999999997543210 01122223333333
Q ss_pred CC-CceEEEEecCCCCCCccchhhhhhHHHHHHhh--cCeeEEEeCCCCHHHHHHHHHHHHHHhC-CCCC-HHHHHHHHH
Q 005987 292 TH-IPTAVVLTECGKADSVDSTAQSFEELQSILVD--AGARKVALNPITNGSIKRTLSKICRQEQ-YSLS-TEQIDLVAQ 366 (666)
Q Consensus 292 ~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r--~r~~~I~F~p~s~~~i~kiL~~I~~~e~-i~v~-~~~l~~Ia~ 366 (666)
+. ...+++++.++.+. . |.+.+.| +.-..|.|..|+..+..++|+.++.... ..+. +..++.|+.
T Consensus 141 g~~~~~~i~ia~tn~p~-------~---LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 141 LEARQQVFIMAATNRPD-------I---IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp CCSTTCEEEEEEESCGG-------G---SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred ccccCCEEEEeecCChh-------h---CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 22 22333333333322 1 2223332 1356789999999999999998775422 2222 223556664
Q ss_pred ------HcCCcHHHHHHHHHHHhc
Q 005987 367 ------ASGGDIRQAITSLQFSSL 384 (666)
Q Consensus 367 ------~s~GDIR~AIn~LQf~~~ 384 (666)
.+++||...++..-+.+.
T Consensus 211 ~~~~~g~sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 211 DLRCDCYTGADLSALVREASICAL 234 (274)
T ss_dssp CSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred hhccCCcCHHHHHHHHHHHHHHHH
Confidence 345688877765554443
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.22 E-value=1.4e-10 Score=121.40 Aligned_cols=204 Identities=12% Similarity=0.186 Sum_probs=118.8
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchh--hhhhhhc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYMHN 223 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~--~~e~l~~ 223 (666)
++++|+...++++...+..... .. ..+||+||||||||++|+++++.. +..++.+|++.... ....+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----SD-ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----TT-SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----CC-CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 3578999999999999887532 11 469999999999999999999976 56778888765211 0000100
Q ss_pred ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC----------
Q 005987 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (666)
Q Consensus 224 ~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~---------- 293 (666)
...|. ++.........++.+ .+.+|||||++.+... .+..|..+++...
T Consensus 76 ~~~g~-~tg~~~~~~g~~~~a---------------~~g~L~LDEi~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 76 HEKGA-FTGADKRREGRFVEA---------------DGGTLFLDEIGDISPL-----MQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp CCSSC-CC---CCCCCHHHHH---------------TTSEEEEESCTTCCHH-----HHHHHHHHHHSSBCCBTTBCCCC
T ss_pred ccccc-cCchhhhhcCHHHhc---------------CCCEEEEeccccCCHH-----HHHHHHHHHhcCEeeecCCcccc
Confidence 00110 000000000111111 1248999999988643 2333445555432
Q ss_pred -C-ceEEEEecCCCCCCccch-hhhhhHHHHHHhhcCeeEEEeCCCC--HHHHHHHHHHHH----HHhC---CCCCHHHH
Q 005987 294 -I-PTAVVLTECGKADSVDST-AQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKIC----RQEQ---YSLSTEQI 361 (666)
Q Consensus 294 -~-PiViIit~~~~~~s~d~~-~r~l~~L~s~L~r~r~~~I~F~p~s--~~~i~kiL~~I~----~~e~---i~v~~~~l 361 (666)
. ..||++++.... +.. ...+. ..+..|.....|.++|+. .+++..++...+ ...+ ..++++++
T Consensus 135 ~~~~riI~atn~~l~---~~v~~g~fr--~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~ 209 (304)
T 1ojl_A 135 SVDVRLIAATHRDLA---EEVSAGRFR--QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAM 209 (304)
T ss_dssp BCCCEEEEEESSCHH---HHHHHTSSC--HHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHH
T ss_pred cCCeEEEEecCccHH---HHHHhCCcH--HHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHH
Confidence 1 233444432100 000 00110 223334346678899988 566665555444 3333 56899999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhc
Q 005987 362 DLVAQAS-GGDIRQAITSLQFSSL 384 (666)
Q Consensus 362 ~~Ia~~s-~GDIR~AIn~LQf~~~ 384 (666)
+.|...+ .|++|...|.++.++.
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999987 8999999999998775
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.18 E-value=4.5e-10 Score=119.03 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=41.0
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
..-+|.+|++++|++..++.+...+.. +. ...+||+||||||||++|+++|+.++.
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~------~~--~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD------PG--IGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC------GG--GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC------CC--CceEEEECCCCccHHHHHHHHHHhCcc
Confidence 344678999999999866654333221 11 135999999999999999999999863
No 76
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.15 E-value=1.4e-10 Score=136.80 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=124.0
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcCC-----CCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~-----~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
+.+.+.++++|+|.++.+++|++++...+... -+-.+++.+||+|||||||||+++++|.+++..++.+++++.
T Consensus 196 ~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l- 274 (806)
T 1ypw_A 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI- 274 (806)
T ss_dssp CCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHH-
T ss_pred cccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHh-
Confidence 35678899999999999999999997533321 122334689999999999999999999999999999886431
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch------hHHHHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLV 289 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~------~~~~~l~~~L~~l~ 289 (666)
.+.........+..+++.+... .+.+++|||++.+... ....++...|..++
T Consensus 275 ----------~~~~~g~~~~~l~~vf~~a~~~------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll 332 (806)
T 1ypw_A 275 ----------MSKLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (806)
T ss_dssp ----------SSSSTTHHHHHHHHHHHHHHHH------------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHH
T ss_pred ----------hhhhhhhHHHHHHHHHHHHHhc------------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHh
Confidence 1111122233455556655432 2579999999865321 12234445565655
Q ss_pred hcCC--CceEEEEecCCCCCCccchhhhhhHHHHHHhh--cCeeEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005987 290 RSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVD--AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (666)
Q Consensus 290 ~~~~--~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r--~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~~Ia 365 (666)
.... ..+++|++ ++.....| ..+.+ .....|.+..|+.+....+|...+....+. .+..+..++
T Consensus 333 ~g~~~~~~v~vI~a-tn~~~~ld----------~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la 400 (806)
T 1ypw_A 333 DGLKQRAHVIVMAA-TNRPNSID----------PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400 (806)
T ss_dssp HSSCTTSCCEEEEE-CSCTTTSC----------TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHH
T ss_pred hhhcccccEEEecc-cCCchhcC----------HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHH
Confidence 5322 23333333 33222222 11211 123568999999999999998776543322 223356677
Q ss_pred HHcCCcHHHHH
Q 005987 366 QASGGDIRQAI 376 (666)
Q Consensus 366 ~~s~GDIR~AI 376 (666)
..+.|-....+
T Consensus 401 ~~t~g~~g~dl 411 (806)
T 1ypw_A 401 NETHGHVGADL 411 (806)
T ss_dssp HSCSSCCHHHH
T ss_pred HhhcCcchHHH
Confidence 66666544433
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.13 E-value=2.1e-10 Score=136.51 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=127.4
Q ss_pred cccccCHHHHHHHHHHHHHhhcC--CCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGD--SKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~--~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~ 223 (666)
.+++|++..++.|...+...... .+++ +...+||+||||||||++|++||+.+ +..++.++++..... +...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~-p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~--~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNR-PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK--HAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSS-CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS--GGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch--hHHH
Confidence 46799999999999999875431 1122 22479999999999999999999999 778999998753210 0000
Q ss_pred ccCCc--cccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC--------
Q 005987 224 CKTGL--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (666)
Q Consensus 224 ~~~g~--~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-------- 293 (666)
...|. .|... +....+.+.+... +..+|||||++.+.. .+++.|+.+++.+.
T Consensus 635 ~l~g~~~~~~G~-~~~g~l~~~~~~~------------~~~vl~lDEi~~l~~-----~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 635 RLIGAPPGYVGY-EEGGQLTEAVRRR------------PYSVILFDEIEKAHP-----DVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GC---------------CHHHHHHHC------------SSEEEEESSGGGSCH-----HHHHHHHHHHTTTEECCSSSCC
T ss_pred HHcCCCCCCcCc-cccchHHHHHHhC------------CCeEEEEecccccCH-----HHHHHHHHHhccCceECCCCCE
Confidence 00110 00000 0001122222211 246999999997753 24455666666542
Q ss_pred ----CceEEEEecCCCCCCcc-------c--hhhhh-----hHH-HHHHhhcCe-eEEEeCCCCHHHHHHHHHHHHHHh-
Q 005987 294 ----IPTAVVLTECGKADSVD-------S--TAQSF-----EEL-QSILVDAGA-RKVALNPITNGSIKRTLSKICRQE- 352 (666)
Q Consensus 294 ----~PiViIit~~~~~~s~d-------~--~~r~l-----~~L-~s~L~r~r~-~~I~F~p~s~~~i~kiL~~I~~~e- 352 (666)
..+||++++.......+ . ....+ ..+ ..++.| + ..+.|.|++.+++..++...+...
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~R--l~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNR--LDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHT--CSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHh--cCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 22344444421100000 0 00000 001 223333 4 678999999999999988776531
Q ss_pred --------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhc
Q 005987 353 --------QYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (666)
Q Consensus 353 --------~i~v~~~~l~~Ia~~s~---GDIR~AIn~LQf~~~ 384 (666)
.+.+++++++.|+..+. |++|...+.++-+..
T Consensus 775 ~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 775 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 24689999999999865 999988888877654
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.07 E-value=6.8e-09 Score=109.35 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=117.9
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch--------
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT-------- 215 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~-------- 215 (666)
.|.....++|+++.++.|..++.. + +.++|+||+|+|||++++.++++.+ ++.++.....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITR 74 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCH
Confidence 344567789999999999999875 3 4899999999999999999999986 4555432210
Q ss_pred -hhhhhhhcccC----------------CccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch--h
Q 005987 216 -IWQEYMHNCKT----------------GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--T 276 (666)
Q Consensus 216 -~~~e~l~~~~~----------------g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~--~ 276 (666)
.....+..... |.........+..++..+..... .+.+.+|+|||++.+... .
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~vlvlDe~~~~~~~~~~ 146 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE--------ELGEFIVAFDEAQYLRFYGSR 146 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH--------HHSCEEEEEETGGGGGGBTTT
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh--------ccCCEEEEEeCHHHHhccCcc
Confidence 00011110000 10000000112222222211100 002579999999987530 0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHH------HHHHhhcCeeEEEeCCCCHHHHHHHHHHHHH
Q 005987 277 AFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL------QSILVDAGARKVALNPITNGSIKRTLSKICR 350 (666)
Q Consensus 277 ~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L------~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~ 350 (666)
....+...|..+.+... ++.+|++.... ..+..+ ...+.......+.+.|++.+++.+++...+.
T Consensus 147 ~~~~~~~~L~~~~~~~~-~~~~il~g~~~--------~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 147 GGKELLALFAYAYDSLP-NLKIILTGSEV--------GLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTHHHHHHHHHHHHHCT-TEEEEEEESSH--------HHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhcC-CeEEEEECCcH--------HHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 00123333444444432 34444443210 001111 0111111246899999999999999998887
Q ss_pred HhCCCCCHHHHHHHHHHcCCcHHH
Q 005987 351 QEQYSLSTEQIDLVAQASGGDIRQ 374 (666)
Q Consensus 351 ~e~i~v~~~~l~~Ia~~s~GDIR~ 374 (666)
..+..++++.+..|+..++|..+.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCHHH
Confidence 778888999999999999999974
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.06 E-value=5.9e-09 Score=113.95 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=49.8
Q ss_pred ccccCHHHHHHHHHHHHHhhc------CCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLG------DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~------~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
+++|+++.++.|..++..... ......+++.+||+||||||||++|+++|+.++..++.++++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~ 85 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchh
Confidence 579999999999888854211 0111223467999999999999999999999999999887643
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=1.3e-09 Score=104.56 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=48.0
Q ss_pred ccccCCCCccccccC----HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEc
Q 005987 140 AEKYKPRSLEELAVQ----RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWD 210 (666)
Q Consensus 140 ~eKY~P~sl~eLvg~----~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~n 210 (666)
.++|+|.+|++++.. ++.++.++.|+++... .+++.++|+||||+||||+++++|..+ |..++.++
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNP-----EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCG-----GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccc-----cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 368999999999873 4455555555554211 123689999999999999999999987 55555544
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.95 E-value=1.4e-11 Score=145.46 Aligned_cols=210 Identities=13% Similarity=0.182 Sum_probs=122.8
Q ss_pred cccCCCCccccccCHHHHHHHHHHHHHhhcC-----CCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCch
Q 005987 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGD-----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (666)
Q Consensus 141 eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~-----~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~ 215 (666)
......+++++.+.++..+.|..++.-.... .-+..+.+.+||+||||||||++|+++|++++..++.++.++..
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 3455667889999998888888776521111 01223446899999999999999999999999998888876521
Q ss_pred hhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcch---------hHHHHHHHHHH
Q 005987 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLL 286 (666)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~---------~~~~~l~~~L~ 286 (666)
+.........+..+++.+.... +.||||||+|.+... ....++.+.|+
T Consensus 549 -----------~~~~g~~~~~i~~~f~~a~~~~------------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL 605 (806)
T 1ypw_A 549 -----------TMWFGESEANVREIFDKARQAA------------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp -----------TCCTTTSSHHHHHHHHHHHHHC------------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHH
T ss_pred -----------hhhcCccHHHHHHHHHHHHhcC------------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHH
Confidence 1111122344556666665442 569999999864321 12233333333
Q ss_pred HHHhc--CCCceEEEEecCCCCCCccchhhhhhHHHHHHhhc-Ce-eEEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 005987 287 LLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GA-RKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (666)
Q Consensus 287 ~l~~~--~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~-r~-~~I~F~p~s~~~i~kiL~~I~~~e~i~v~~~~l~ 362 (666)
..++. ....+++ +..++.... |...+.++ |+ ..|.|.+|+.++..++|+..+....+. .+..++
T Consensus 606 ~~ld~~~~~~~v~v-I~tTN~~~~----------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~ 673 (806)
T 1ypw_A 606 TEMDGMSTKKNVFI-IGATNRPDI----------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE 673 (806)
T ss_dssp TTCC------CCBC-CCCCBSCGG----------GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCS
T ss_pred HHHhcccccCCeEE-EEecCCccc----------CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHH
Confidence 33321 1112333 333333221 22222221 23 478999999999999998876543321 111233
Q ss_pred HHHHH----cCCcHHHHHHHHHHHhcC
Q 005987 363 LVAQA----SGGDIRQAITSLQFSSLK 385 (666)
Q Consensus 363 ~Ia~~----s~GDIR~AIn~LQf~~~~ 385 (666)
.|+.. +++||+.+++.....+..
T Consensus 674 ~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 674 FLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp CSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 34443 456899888877777654
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.94 E-value=2.3e-09 Score=99.51 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=45.2
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+++|+...++++...++.+.. . . ..+||+||||||||++|+++++.. +..++ +++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~--~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---T--D-IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---C--C-SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CceeCCHHHHHHHHHHHHHhC---C--C-CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 678999999999999987532 1 1 469999999999999999999986 56677 77654
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.92 E-value=4.9e-09 Score=119.96 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=50.0
Q ss_pred ccccccCCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 138 ~W~eKY~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
....+|+|+++++++|++..++.+...+.. + ..++|+|||||||||+++++|+.+.
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~------g----~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQ------K----RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHT------T----CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cCcccccccccceEECchhhHhhccccccC------C----CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 456799999999999999999999888875 3 4799999999999999999999884
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.89 E-value=1.5e-08 Score=112.88 Aligned_cols=193 Identities=11% Similarity=0.110 Sum_probs=106.6
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCC--cEEEEcCCCchhhhhhhhcccCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTPTPTIWQEYMHNCKTG 227 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~--~viE~nasd~~~~~e~l~~~~~g 227 (666)
.++|++..++.+...+.. + .++||+||||||||++|+++|+.++. .+...+..- ....+.+.. ..+
T Consensus 23 ~ivGq~~~i~~l~~al~~------~----~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~-~~~ 90 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS------G----ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGP-LSI 90 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH------T----CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCC-BC-
T ss_pred hhHHHHHHHHHHHHHHhc------C----CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCc-ccH
Confidence 468999999888877765 2 47999999999999999999999843 223333211 000111100 000
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcC-----------CCce
Q 005987 228 LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-----------HIPT 296 (666)
Q Consensus 228 ~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~-----------~~Pi 296 (666)
.. . .....+... ..|....+.||+|||++.+.. ..+..|...++.. ..++
T Consensus 91 ~~----------~-~~~g~~~~~---~~g~l~~~~IL~IDEI~r~~~-----~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 91 QA----------L-KDEGRYERL---TSGYLPEAEIVFLDEIWKAGP-----AILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp --------------------CBC---CTTSGGGCSEEEEESGGGCCH-----HHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred HH----------H-hhchhHHhh---hccCCCcceeeeHHhHhhhcH-----HHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 00 0 000011000 011100245899999987643 2334455555432 2244
Q ss_pred EEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH-HHHHHHHHHHH-----------------------HHh
Q 005987 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN-GSIKRTLSKIC-----------------------RQE 352 (666)
Q Consensus 297 ViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~-~~i~kiL~~I~-----------------------~~e 352 (666)
++++++. .+. . .. .+.+++.|+ ...|.+.+|+. ++...+|.+.+ ...
T Consensus 152 iI~ATN~-lpe-~---~~---~~~aLldRF-~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 222 (500)
T 3nbx_X 152 LVAASNE-LPE-A---DS---SLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG 222 (500)
T ss_dssp EEEEESS-CCC-T---TC---TTHHHHTTC-CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT
T ss_pred hhhcccc-CCC-c---cc---cHHHHHHHH-HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC
Confidence 4555541 111 0 01 124555553 67789999987 55666665433 123
Q ss_pred CCCCCHHHHHHHHHHc----------CCcHHHHHHHHHHH
Q 005987 353 QYSLSTEQIDLVAQAS----------GGDIRQAITSLQFS 382 (666)
Q Consensus 353 ~i~v~~~~l~~Ia~~s----------~GDIR~AIn~LQf~ 382 (666)
++.++++++++|+... +...|.++..+..+
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A 262 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLL 262 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHH
Confidence 6778999999998776 55778876666543
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.86 E-value=6.5e-09 Score=96.22 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=45.0
Q ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 150 eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
+++|+...++++...++.+.. .. ..+||+||||||||++|+++++..+ .++.+++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~---~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RT---SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CS---SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC---CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh
Confidence 578999999999999987543 11 4699999999999999999999887 777777654
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.84 E-value=1.7e-08 Score=98.37 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=51.3
Q ss_pred cccccCCCCccccccCH----HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 139 WAEKYKPRSLEELAVQR----KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~----k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+..+|++.+++++++.. ..++.+..|+..+.. +. .++.++|+||||||||++++++++++ +..++.+++
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEP---GK-KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---SC-CCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhh---cc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 45678899999999754 355566666665321 11 12589999999999999999999988 667776665
Q ss_pred C
Q 005987 212 P 212 (666)
Q Consensus 212 s 212 (666)
+
T Consensus 91 ~ 91 (202)
T 2w58_A 91 P 91 (202)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.82 E-value=3.2e-08 Score=100.83 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCC-CCccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 160 EVRAWFEERLGDSKDK-FSTNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 160 el~~wL~~~~~~~~g~-~~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
.+..|+..|+. +. ++.+.++|+||||||||.++.+||+.++.
T Consensus 88 ~~~~~l~~~l~---~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 88 YAASVFLGWAT---KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHHT---TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHh---CCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 56667777776 44 33468999999999999999999998654
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=8.5e-08 Score=101.05 Aligned_cols=203 Identities=12% Similarity=0.162 Sum_probs=112.9
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc--------hh
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP--------TI 216 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~--------~~ 216 (666)
|.....++|+++.++.|.. +.. +.++|+||+|+|||++++.++++++..++.++.... ..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~-----------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA-----------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS-----------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC-----------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHH
Confidence 3455678999999988877 542 389999999999999999999998776666664321 11
Q ss_pred hhhhhhc-----------------ccCCc-------cccc---hhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCC
Q 005987 217 WQEYMHN-----------------CKTGL-------EYTS---KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDL 269 (666)
Q Consensus 217 ~~e~l~~-----------------~~~g~-------~~~s---~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEi 269 (666)
....+.. ...|+ .... ....+..++..+.... . .+.+|+|||+
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~--~~~vlvlDe~ 146 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS--------K--DNVIIVLDEA 146 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC--------S--SCEEEEEETG
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC--------C--CCeEEEEECH
Confidence 0000000 00010 0000 0112334444443221 0 2679999999
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhh--hHHHHHHhhcCeeEEEeCCCCHHHHHHHHHH
Q 005987 270 PVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF--EELQSILVDAGARKVALNPITNGSIKRTLSK 347 (666)
Q Consensus 270 d~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l--~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~ 347 (666)
+.+..... ..+...|..+..... ++.+|++..... ...+.+ ......+.......|.+.|++.+++.+++..
T Consensus 147 ~~~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~g~~~~----~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 147 QELVKLRG-VNLLPALAYAYDNLK-RIKFIMSGSEMG----LLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp GGGGGCTT-CCCHHHHHHHHHHCT-TEEEEEEESSHH----HHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred HHhhccCc-hhHHHHHHHHHHcCC-CeEEEEEcCchH----HHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 98643100 012222333443322 343444432100 000000 0000111111246899999999999999998
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005987 348 ICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (666)
Q Consensus 348 I~~~e~i~v~~~~l~~Ia~~s~GDIR~AIn 377 (666)
.+...+...++. ..|+..++|.......
T Consensus 221 ~~~~~~~~~~~~--~~i~~~t~G~P~~l~~ 248 (357)
T 2fna_A 221 GFQEADIDFKDY--EVVYEKIGGIPGWLTY 248 (357)
T ss_dssp HHHHHTCCCCCH--HHHHHHHCSCHHHHHH
T ss_pred HHHHcCCCCCcH--HHHHHHhCCCHHHHHH
Confidence 877666666544 8899999999885433
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.78 E-value=2.6e-08 Score=97.23 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..+..++.|++. .+..+.+||+||||||||++|.++|+.++..++.+
T Consensus 43 ~f~~~l~~~~~~-------iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 43 TFLGALKSFLKG-------TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp HHHHHHHHHHHT-------CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHHHHhc-------CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 345566666652 22235799999999999999999999997766543
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.54 E-value=9e-08 Score=100.23 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=50.4
Q ss_pred cccccCCCCccccccCH----HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC----CcEEEEc
Q 005987 139 WAEKYKPRSLEELAVQR----KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG----ARLYEWD 210 (666)
Q Consensus 139 W~eKY~P~sl~eLvg~~----k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg----~~viE~n 210 (666)
....|++.+|+++.+.. ..+..+..|+..+- .. ..+.++|+||||||||+++.++|+++. ..++.++
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~----~~-~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYP----SA-EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCS----CS-SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhcc----cc-CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45677889999998643 34556667776532 11 136899999999999999999998764 6777666
Q ss_pred CC
Q 005987 211 TP 212 (666)
Q Consensus 211 as 212 (666)
++
T Consensus 189 ~~ 190 (308)
T 2qgz_A 189 FP 190 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.52 E-value=1.2e-07 Score=104.80 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=41.2
Q ss_pred CCCCccccccCCCCccccc-cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 134 STQQLWAEKYKPRSLEELA-VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 134 ~~~~~W~eKY~P~sl~eLv-g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.+|++||+|.++++|- .|...+..+..++.. +. +.++|.||||||||+++..+++.+
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~------~~---~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE------KK---HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHS------SS---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhc------CC---CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999999999997 688888888888775 22 379999999999999999999887
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=6.3e-07 Score=83.55 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~ 255 (666)
..++|+||+|+||||++++++..+ |..++.++..+.. .. .++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~----------------~~-----~~~-------------- 81 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP----------------LT-----DAA-------------- 81 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC----------------CC-----GGG--------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh----------------HH-----HHH--------------
Confidence 589999999999999999999988 7777777765410 00 010
Q ss_pred CCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCCceEEEEecC
Q 005987 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (666)
Q Consensus 256 ~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~PiViIit~~ 303 (666)
..+.+|+|||++.+.... ...+...+..+.+.+ .++++++++.
T Consensus 82 ---~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g-~~~iiits~~ 124 (149)
T 2kjq_A 82 ---FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSG-KGFLLLGSEY 124 (149)
T ss_dssp ---GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHT-CCEEEEEESS
T ss_pred ---hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcC-CcEEEEECCC
Confidence 124599999999876543 344555555555544 3435556653
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.41 E-value=2.4e-06 Score=91.57 Aligned_cols=202 Identities=16% Similarity=0.252 Sum_probs=118.3
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCc--EEEEcCCCch--hh-hhhhhc
Q 005987 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR--LYEWDTPTPT--IW-QEYMHN 223 (666)
Q Consensus 149 ~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~--viE~nasd~~--~~-~e~l~~ 223 (666)
.+++++.....++...+..... .. ..++++|++|+||+++++++.+..+-. ++.+|+.... .. .+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~---~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SK---APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SC---SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhc---cc---hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc
Confidence 4578888888888887775432 22 359999999999999999998876433 8888886521 11 111110
Q ss_pred ---ccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCCC------
Q 005987 224 ---CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------ 294 (666)
Q Consensus 224 ---~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~~------ 294 (666)
..+|.. ..... .++.+ ....|+|||++.+... .+..|+.+++.+..
T Consensus 203 ~~g~~tga~-~~~~g----~~~~a---------------~~gtlfldei~~l~~~-----~Q~~Ll~~l~~~~~~~~g~~ 257 (368)
T 3dzd_A 203 EKGAFTGAL-TRKKG----KLELA---------------DQGTLFLDEVGELDQR-----VQAKLLRVLETGSFTRLGGN 257 (368)
T ss_dssp CSCSSSSCC-CCEEC----HHHHT---------------TTSEEEEETGGGSCHH-----HHHHHHHHHHHSEECCBTCC
T ss_pred cccccCCcc-cccCC----hHhhc---------------CCCeEEecChhhCCHH-----HHHHHHHHHHhCCcccCCCC
Confidence 001100 00000 11111 1237999999988643 33345555554321
Q ss_pred ------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHHHHHH----hC---CCCCHH
Q 005987 295 ------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICRQ----EQ---YSLSTE 359 (666)
Q Consensus 295 ------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~I~~~----e~---i~v~~~ 359 (666)
-.+|.+|+.+.... .....+. ..++.|..+..|.++|+.. +++..++...+.+ .+ ..++++
T Consensus 258 ~~~~~~~rii~at~~~l~~~--v~~g~fr--~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 258 QKIEVDIRVISATNKNLEEE--IKKGNFR--EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE 333 (368)
T ss_dssp CBEECCCEEEEEESSCHHHH--HHTTSSC--HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred cceeeeeEEEEecCCCHHHH--HHcCCcc--HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 12333343211000 0000110 1233444567889999987 6766655555433 33 458999
Q ss_pred HHHHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 360 QIDLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 360 ~l~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+++.|.... .|++|...|.++.++..
T Consensus 334 a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 334 TKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 999999887 89999999999988764
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.38 E-value=1e-06 Score=114.26 Aligned_cols=186 Identities=11% Similarity=0.143 Sum_probs=101.1
Q ss_pred CccccccCCC-------CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHH-HHHHHHcCCcEEE
Q 005987 137 QLWAEKYKPR-------SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATV-RQIASHLGARLYE 208 (666)
Q Consensus 137 ~~W~eKY~P~-------sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla-~~LAkelg~~viE 208 (666)
.+|.++..+- .+.+++++.--......++..++.. .+.+||+||||||||++| +++++..++.++.
T Consensus 1225 ~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~------~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~ 1298 (2695)
T 4akg_A 1225 SSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNS------KRGIILCGPPGSGKTMIMNNALRNSSLYDVVG 1298 (2695)
T ss_dssp BCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHH------TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEE
T ss_pred eechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHC------CCeEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 4677765332 3455666555445555555554431 158999999999999999 5555555788888
Q ss_pred EcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCC-CCCC--CCCCCCceEEEEeCCCCCcchh-HHHHHHHH
Q 005987 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGST-SPSI--PGESKSSAILLIDDLPVTNGRT-AFERLRQC 284 (666)
Q Consensus 209 ~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l-~~s~--~~~~~~~~IIlIDEid~l~~~~-~~~~l~~~ 284 (666)
++.+..+ ....+...++..-..... .+.. ....+++.||+|||++...... .-+...+.
T Consensus 1299 infsa~t-----------------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lel 1361 (2695)
T 4akg_A 1299 INFSKDT-----------------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLF 1361 (2695)
T ss_dssp EECCTTC-----------------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHH
T ss_pred EEeecCC-----------------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHH
Confidence 8876521 112344444432111000 0000 0012346799999976532110 00123445
Q ss_pred HHHHHhcCCC-----------ceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 285 LLLLVRSTHI-----------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 285 L~~l~~~~~~-----------PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
|+.+++.+.. .-+.++++++..+... |. .|.+++.| ++..|.++.|+.+.+.+++..++..
T Consensus 1362 LRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG---R~--~l~~rllR-rf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1362 LRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPG---RI--PMSERFTR-HAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTT---CC--CCCHHHHT-TEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCC---Cc--cCChhhhh-eeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6666664321 1123334444332111 10 12223333 5889999999999999999998864
No 95
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.26 E-value=3.9e-05 Score=82.73 Aligned_cols=207 Identities=16% Similarity=0.232 Sum_probs=114.4
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC---CcEEEEcCCCchh--hhhhhh
Q 005987 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTI--WQEYMH 222 (666)
Q Consensus 148 l~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg---~~viE~nasd~~~--~~e~l~ 222 (666)
+.+++++...++++...++.... .. ..++|+|++|+||+++|+++..... ..++.+|+..... ....+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~---~~---~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC---AE---CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT---CC---SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC---CC---CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 34678888888888888876432 22 3589999999999999999988763 5688888765210 000000
Q ss_pred cccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-------C-
Q 005987 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------I- 294 (666)
Q Consensus 223 ~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-------~- 294 (666)
....|.. +.....-...++.+ ...+|+|||++.+... .+..|..+++... .
T Consensus 210 g~~~g~~-tga~~~~~g~~~~a---------------~~gtlfldei~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 210 GYEKGAF-TGAVSSKEGFFELA---------------DGGTLFLDEIGELSLE-----AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp CBCTTSS-TTCCSCBCCHHHHT---------------TTSEEEEESGGGCCHH-----HHHHHHHHHHHSEECCBTCCSB
T ss_pred CCCCCCC-CCcccccCCceeeC---------------CCcEEEEcChhhCCHH-----HHHHHHHHHhcCcEEeCCCCce
Confidence 0001100 00000000011111 1248999999988643 2333444444321 1
Q ss_pred ---c-eEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCH--HHHHHHHHHH----HHHhCC---CCCHHHH
Q 005987 295 ---P-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKI----CRQEQY---SLSTEQI 361 (666)
Q Consensus 295 ---P-iViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~--~~i~kiL~~I----~~~e~i---~v~~~~l 361 (666)
. .||.+++....... ....+. ..++.|..+..|.++|+.. +++..++... +.+.+. .++++++
T Consensus 269 ~~~~~rii~at~~~l~~~~--~~g~fr--~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 344 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELV--KEGKFR--EDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQ 344 (387)
T ss_dssp EECCCEEEEEESSCHHHHH--HTTSSC--HHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHH
T ss_pred eeccEEEEEeCCCCHHHHH--HcCCcc--HHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1 23334432110000 000010 2223333466788888865 5555554444 333332 3789999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcC
Q 005987 362 DLVAQAS-GGDIRQAITSLQFSSLK 385 (666)
Q Consensus 362 ~~Ia~~s-~GDIR~AIn~LQf~~~~ 385 (666)
+.|.... .|++|..-|.++.++..
T Consensus 345 ~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 345 ELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999775 79999999999988753
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.18 E-value=7.4e-07 Score=101.58 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARL 206 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~v 206 (666)
++||+||||||||++|+++|+.++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 699999999999999999999986543
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.11 E-value=2e-05 Score=75.52 Aligned_cols=28 Identities=46% Similarity=0.790 Sum_probs=24.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+.|.||+|+||||++++++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999999865443
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.91 E-value=0.00013 Score=82.77 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHH
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAk 200 (666)
-|.....++|++..+++|..+|... .+. .+.++|+||+|+||||+|..+++
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~----~~~--~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL----KGE--PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS----TTS--CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc----cCC--CceEEEEcCCCCCHHHHHHHHHh
Confidence 4666677899999999999998742 022 36899999999999999999874
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.82 E-value=4e-05 Score=79.92 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=25.4
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
+.+.++|+||||||||+++..+|.+.|..++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~Vl 152 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDK 152 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEE
Confidence 3467899999999999999999987655543
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.79 E-value=0.00022 Score=69.59 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=30.8
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd 213 (666)
+..+++|+||||+||||++..+|...+..++.+....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3468999999999999999999986677787776543
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.77 E-value=6.8e-05 Score=98.16 Aligned_cols=186 Identities=12% Similarity=0.209 Sum_probs=96.7
Q ss_pred Ccccccc-----CCC--CccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc-CCcEEE
Q 005987 137 QLWAEKY-----KPR--SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-GARLYE 208 (666)
Q Consensus 137 ~~W~eKY-----~P~--sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel-g~~viE 208 (666)
.+|.++. .|. .+.+++++---..+...++..++.. + +++||+||||||||+++..+.+.+ ++.++.
T Consensus 1262 ~~W~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll~~ll~~---~---~pvLL~GptGtGKT~li~~~L~~l~~~~~~~ 1335 (3245)
T 3vkg_A 1262 SLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSE---H---RPLILCGPPGSGKTMTLTSTLRAFPDFEVVS 1335 (3245)
T ss_dssp EETTCCC---CCCSTTTTCTTCCCCCHHHHHHHHHHHHHHHT---T---CCCEEESSTTSSHHHHHHHHGGGCTTEEEEE
T ss_pred eehhhcCCccccCCccCCcccceecchHHHHHHHHHHHHHHC---C---CcEEEECCCCCCHHHHHHHHHHhCCCCceEE
Confidence 4576653 232 3556777655544555556655542 1 469999999999998875544444 677788
Q ss_pred EcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCC--CCCCC--CCCCceEEEEeCCCCCcch-hHHHHHHH
Q 005987 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS--PSIPG--ESKSSAILLIDDLPVTNGR-TAFERLRQ 283 (666)
Q Consensus 209 ~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~--~s~~~--~~~~~~IIlIDEid~l~~~-~~~~~l~~ 283 (666)
+|.+..+. ...+...++..-.+.... +...+ ..+++.|++|||++.-... -..+...+
T Consensus 1336 infS~~Tt-----------------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ie 1398 (3245)
T 3vkg_A 1336 LNFSSATT-----------------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVIT 1398 (3245)
T ss_dssp ECCCTTCC-----------------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHH
T ss_pred EEeeCCCC-----------------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHH
Confidence 88765321 123333333211111100 00001 1134679999999753211 00012334
Q ss_pred HHHHHHhcCC-----------CceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHHH
Q 005987 284 CLLLLVRSTH-----------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (666)
Q Consensus 284 ~L~~l~~~~~-----------~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~~ 351 (666)
.|+.+++.+. .+-+.++++.+.+.... | .++..++.| ++..|.+..|+.+.+..+...++..
T Consensus 1399 lLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gG---r--~~l~~Rf~r-~F~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1399 FIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAG---R--VQLTHRFLR-HAPILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp HHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTT---C--CCCCHHHHT-TCCEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCC---C--ccCCHHHHh-hceEEEeCCCCHHHHHHHHHHHHHH
Confidence 4555555321 01122233333321111 1 012233333 5888999999999999998877653
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.63 E-value=0.00039 Score=68.10 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.1
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
...++|.||||+||||+++.+|..+ +..++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3689999999999999999999665 5666666543
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.62 E-value=0.00045 Score=89.92 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=77.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
...++.||||||||++++.+|+.+|..++.+|+++.. .+ ..+..++..+...+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l-------------d~----~~lg~~~~g~~~~G---------- 698 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF-------------DY----QVLSRLLVGITQIG---------- 698 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC-------------CH----HHHHHHHHHHHHHT----------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC-------------Ch----hHhhHHHHHHHhcC----------
Confidence 4688999999999999999999999999999987632 21 23344444443332
Q ss_pred CCceEEEEeCCCCCcchhHHHHHH---HHHHHHHhcC--------------CCceEEEEecCCCCCCccchhhhhhHHHH
Q 005987 259 KSSAILLIDDLPVTNGRTAFERLR---QCLLLLVRST--------------HIPTAVVLTECGKADSVDSTAQSFEELQS 321 (666)
Q Consensus 259 ~~~~IIlIDEid~l~~~~~~~~l~---~~L~~l~~~~--------------~~PiViIit~~~~~~s~d~~~r~l~~L~s 321 (666)
..+++||++.+... ....+. ..+...+... ....||++.+.+.. .+. .|+.
T Consensus 699 ---aw~~~DE~nr~~~e-vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~------g~~--eLP~ 766 (2695)
T 4akg_A 699 ---AWGCFDEFNRLDEK-VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN------GRS--ELPE 766 (2695)
T ss_dssp ---CEEEEETTTSSCHH-HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS------SSC--CCCH
T ss_pred ---CEeeehhhhhcChH-HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc------Ccc--cccH
Confidence 48999999987543 222221 1122222211 11234444442111 110 1233
Q ss_pred HHhhcCeeEEEeCCCCHHHHHHHHH
Q 005987 322 ILVDAGARKVALNPITNGSIKRTLS 346 (666)
Q Consensus 322 ~L~r~r~~~I~F~p~s~~~i~kiL~ 346 (666)
.|.+ ++..|.+..|+.+.+.+++.
T Consensus 767 ~Lk~-~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 767 NLKK-SFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHT-TEEEEECCCCCHHHHHHHHH
T ss_pred HHHh-heEEEEeeCCCHHHHHHHHH
Confidence 3333 58889999999988887753
No 104
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.62 E-value=0.00078 Score=75.82 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHH
Q 005987 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 152 vg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAk 200 (666)
+|++..+++|..||...- ....+++.|+|++|+||||+|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999999999997521 11226899999999999999999997
No 105
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.60 E-value=0.00016 Score=75.04 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=85.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
+.++|.||+|+|||+++..||+.++.+++..+.-. . ..|.........- ++....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q--v--------Y~~~~igTakp~~----~E~~~v----------- 65 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL--I--------YKGMDIGTAKPNA----EELLAA----------- 65 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT--T--------BTTCCTTTTCCCH----HHHHHS-----------
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc--c--------cccccccCCCCCH----HHHcCC-----------
Confidence 68999999999999999999999997776544321 1 1122111000000 001111
Q ss_pred CCceEEEEeCCC--CCcchhHHH-HHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCC
Q 005987 259 KSSAILLIDDLP--VTNGRTAFE-RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (666)
Q Consensus 259 ~~~~IIlIDEid--~l~~~~~~~-~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p 335 (666)
+ --+||.++ .......|. .....+..+...++.|+ +++.++ . -+++++.. +..-|
T Consensus 66 --~-hhlid~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pi--lVGGTg------l------Yi~all~g-----l~~~p 123 (316)
T 3foz_A 66 --P-HRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPL--LVGGTM------L------YFKALLEG-----LSPLP 123 (316)
T ss_dssp --C-EETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEE--EEESCH------H------HHHHHHSC-----CCCCC
T ss_pred --C-EEEeccCCccccccHHHHHHHHHHHHHHHHhCCCcEE--EEcCcH------H------HHHHHHcC-----cCCCC
Confidence 1 12344332 222223333 33355677777777664 455532 1 14555432 22334
Q ss_pred CCHHHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 005987 336 ITNGSIKRTLSKICRQEQYS--------LSTEQIDLVAQASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 336 ~s~~~i~kiL~~I~~~e~i~--------v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~ 386 (666)
..+.++++.|...+..+|.. +++.... .....|.|+.+..|+.+...+
T Consensus 124 ~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~---ri~pnd~~Ri~RALEV~~~TG 179 (316)
T 3foz_A 124 SADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAA---RIHPNDPQRLSRALEVFFISG 179 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HSCTTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHh---hCCCccHHHHHHHHHHHHHHC
Confidence 45556777777777665521 2222211 124689999999999876543
No 106
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.54 E-value=0.00014 Score=76.06 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=53.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCcccc---chhHHHHHHHHHHHhhcCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYT---SKLDEFENFVERIRRYGSTSPSIP 255 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~---s~~~~f~~fl~~a~~~~~l~~s~~ 255 (666)
+.++|+||+|+||||+++.||++++..++..+... . ..|.... ...++ ....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q--v--------y~~~~igTakp~~~e-------~~gv-------- 60 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL--I--------YRGMDIGTAKPSREL-------LARY-------- 60 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT--T--------BTTCCTTTTCCCHHH-------HHHS--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh--h--------hcCCCcccCCCCHHH-------HcCC--------
Confidence 58999999999999999999999998888765432 0 1121110 00111 0111
Q ss_pred CCCCCceEEEEeCCCC--CcchhHHHH-HHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEE
Q 005987 256 GESKSSAILLIDDLPV--TNGRTAFER-LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (666)
Q Consensus 256 ~~~~~~~IIlIDEid~--l~~~~~~~~-l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~ 332 (666)
+ -.+||.++- ..+...|.. ...++..+...++. +|+++.+. .-+++++.. . ..
T Consensus 61 -----p-h~lid~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~--~IlvGGt~------------~y~~all~g--~--~~ 116 (323)
T 3crm_A 61 -----P-HRLIDIRDPAESYSAAEFRADALAAMAKATARGRI--PLLVGGTM------------LYYKALLEG--L--AD 116 (323)
T ss_dssp -----C-EETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCE--EEEEESCH------------HHHHHHHCC--C----
T ss_pred -----C-EEEeeccCcccccCHHHHHHHHHHHHHHHHHcCCe--EEEECCch------------hhHHHHHcC--C--CC
Confidence 1 245554432 222333332 33456666666654 44455422 113444421 1 12
Q ss_pred eCCCCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 005987 333 LNPITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 333 F~p~s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~ 386 (666)
+++ ...++++.|...+..+|. .+++.....| ...|.|+.+..|+.+...+
T Consensus 117 ~p~-~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i---~~nd~~Ri~RALEv~~~tG 174 (323)
T 3crm_A 117 MPG-ADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARI---HPNDPQRLMRALEVYRLGG 174 (323)
T ss_dssp --------------------------------------------------------------
T ss_pred CCC-CCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhc---CCCCHHHHHHHHHHHHHHC
Confidence 333 445577777776665552 2344443333 3579999999999887644
No 107
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.49 E-value=0.0013 Score=80.70 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=42.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHH
Q 005987 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 144 ~P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAke 201 (666)
-|.....++|+++.+++|..+|... ....+.+.|+|++|+||||+|..+++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 5667778999999999999999642 112268999999999999999988775
No 108
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.43 E-value=0.00026 Score=73.56 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=86.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
++++|.||+|+|||+++..||+.++..++....- ..+ .++.....-.. .++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~--QvY--------r~~~igTakp~----~~E~~g------------ 57 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM--QVY--------RGMDIGTAKIT----AEEMDG------------ 57 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG--GGB--------TTCCTTTTCCC----HHHHTT------------
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc--cce--------eeeeecCCCCC----HHHHcC------------
Confidence 5789999999999999999999998766543321 111 12111100000 001100
Q ss_pred CCceEEEEeCCC--CCcchhHH-HHHHHHHHHHHhcCCCceEEEEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCC
Q 005987 259 KSSAILLIDDLP--VTNGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (666)
Q Consensus 259 ~~~~IIlIDEid--~l~~~~~~-~~l~~~L~~l~~~~~~PiViIit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p 335 (666)
-+ --+||.++ .......| +.....+..+...++.|+ +++.++ . -+++++.. +.|.|
T Consensus 58 -vp-hhlid~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pI--lVGGTg------l------Yi~aLl~g-----~~~~~ 116 (322)
T 3exa_A 58 -VP-HHLIDIKDPSESFSVADFQDLATPLITEIHERGRLPF--LVGGTG------L------YVNAVIHQ-----FNLGD 116 (322)
T ss_dssp -CC-EESSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEE--EESCCH------H------HHHHHHHT-----CCCCC
T ss_pred -CC-EEEeccCChhhhccHHHHHHHHHHHHHHHHhCCCcEE--EEcCcH------H------HHHHHHcC-----CcCCC
Confidence 11 23455433 22222233 333456667777777654 456532 1 14555432 35666
Q ss_pred C-CHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 005987 336 I-TNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQ 386 (666)
Q Consensus 336 ~-s~~~i~kiL~~I~~~e~i--------~v~~~~l~~Ia~~s~GDIR~AIn~LQf~~~~~ 386 (666)
. ...++++.|...+..+|. .+++..... ....|.|+.+..|+.+...+
T Consensus 117 ~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~---i~pnd~~Ri~RALEV~~~TG 173 (322)
T 3exa_A 117 IRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAA---IHPNNYRRVIRALEIIKLTG 173 (322)
T ss_dssp CBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTT---SCTTCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhh---cCcccHHHHHHHHHHHHHHC
Confidence 5 345788888877776652 123322111 14589999999999986544
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00016 Score=69.62 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
++.+++||+|+||||++..++..+ |.+++-+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 589999999999999997666654 66666553
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.38 E-value=0.00052 Score=68.08 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=27.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
.+.+++||+|+||||++..++..+ |..++-+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 689999999999999998888776 667776653
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.37 E-value=0.00012 Score=69.68 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=28.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|+|||||||||+++.||+.+|+.++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988754
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=0.00076 Score=66.73 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred CccEEEEECCCCchHHHHHHHHHHH--c-------CCcEEEEcCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASH--L-------GARLYEWDTPT 213 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAke--l-------g~~viE~nasd 213 (666)
+..+++|+||||+||||+++.+|.. + +..++.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3468999999999999999999985 3 45677776544
No 113
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.35 E-value=0.014 Score=63.60 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=91.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCCchhh-hhhh--hcccCCccc------cchhHHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW-QEYM--HNCKTGLEY------TSKLDEFENFVERIR 245 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd~~~~-~e~l--~~~~~g~~~------~s~~~~f~~fl~~a~ 245 (666)
+.+++++||+|+||||++..||..+ |.++.-+.+...+.- .+.+ .....|+.+ ....+...+.+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876 778777665432210 0000 001112111 112223344555554
Q ss_pred hhcCCCCCCCCCCCCceEEEEeCCCCCcchhHHHHHHHHHHHHHhcCC-CceEEEEecCCCCCCccchhhhhhHHHHHHh
Q 005987 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILV 324 (666)
Q Consensus 246 ~~~~l~~s~~~~~~~~~IIlIDEid~l~~~~~~~~l~~~L~~l~~~~~-~PiViIit~~~~~~s~d~~~r~l~~L~s~L~ 324 (666)
..+ .-++|||.......... +...+..+..... ..+++++.... . . ......+.+..
T Consensus 180 ~~~------------~DvVIIDTaGrl~~d~~---lm~el~~i~~~~~pd~vlLVvDA~~-g----q--~a~~~a~~f~~ 237 (443)
T 3dm5_A 180 SKG------------VDIIIVDTAGRHKEDKA---LIEEMKQISNVIHPHEVILVIDGTI-G----Q--QAYNQALAFKE 237 (443)
T ss_dssp HTT------------CSEEEEECCCCSSCCHH---HHHHHHHHHHHHCCSEEEEEEEGGG-G----G--GHHHHHHHHHH
T ss_pred hCC------------CCEEEEECCCcccchHH---HHHHHHHHHHhhcCceEEEEEeCCC-c----h--hHHHHHHHHHh
Confidence 311 23899999876643321 2222222222221 12444443321 1 1 01111222222
Q ss_pred hcCeeEEEeCCCCHHHHHHHHHHHHHHhCCC---------------CCH-HHHHHHHHHcCCcHHHHHHHHHHHh
Q 005987 325 DAGARKVALNPITNGSIKRTLSKICRQEQYS---------------LST-EQIDLVAQASGGDIRQAITSLQFSS 383 (666)
Q Consensus 325 r~r~~~I~F~p~s~~~i~kiL~~I~~~e~i~---------------v~~-~~l~~Ia~~s~GDIR~AIn~LQf~~ 383 (666)
......|-++.++.+.-...+..++...++. +++ ..+..|. -.||+-..+...|-..
T Consensus 238 ~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~ll--g~gd~~~l~e~~~~~~ 310 (443)
T 3dm5_A 238 ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL--GLGDIQGLLEKFKELE 310 (443)
T ss_dssp SCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHT--TTTCHHHHHHHHHHHH
T ss_pred hCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHc--CCCcHHHHHHHHHHhh
Confidence 2345667888887665444444444443332 223 3344443 4699999998877653
No 114
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.0003 Score=67.97 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+.|.||+|+||||+++.+|..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999987
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.34 E-value=0.0015 Score=69.32 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
-++..+++|+||||+||||++..+|..+ +..++.++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3445689999999999999999999875 66777776543
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00015 Score=68.48 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.+++|+||||+||||+++.||+.++..++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 5899999999999999999999998765543
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.29 E-value=0.00017 Score=67.51 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.||+.+++.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 3789999999999999999999999887643
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.0002 Score=68.32 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|.||||+||||+++.|++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 689999999999999999999999987765
No 119
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00021 Score=69.21 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=28.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|.|||||||||+++.||+.+|+.++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 5899999999999999999999999887753
No 120
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.00046 Score=71.13 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.....+...+...+........+..++|+||||+||||+++.|+++++..++.++
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3334444444444432212223368999999999999999999999843334444
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.00026 Score=66.30 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.+++|+|+|||||||+++.||+.+|+.++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5899999999999999999999999988753
No 122
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00026 Score=66.46 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=26.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+||+||||||+++.||..+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 479999999999999999999999976553
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00027 Score=66.72 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++|.||||+||||+++.||+.+++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 124
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00027 Score=67.22 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+|+||+||||+++.||+.+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3699999999999999999999999887753
No 125
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00029 Score=66.78 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=27.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+.++|+||||+||||+++.||+.+++.++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 579999999999999999999999987764
No 126
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.11 E-value=0.003 Score=62.96 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=28.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
.+||+||+|+|||.++..++..++..++-+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999987777766543
No 127
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.10 E-value=0.00034 Score=65.17 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=27.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.| +.+|+.++..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 47899999999999999999 9999988764
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0041 Score=61.44 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.4
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+...++|+||||+||||++..+|..+ +..++.++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 34689999999999999988777654 66677666543
No 129
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.00034 Score=70.73 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=28.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
++++|.||||+||||+++.||+.+++.++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 47899999999999999999999998887554
No 130
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.06 E-value=0.004 Score=66.36 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=30.2
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
++..+++|+||||+|||+++..+|..+ |..++.++...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 344689999999999999999888765 66777776543
No 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.05 E-value=0.00035 Score=65.50 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=27.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+.++|+|+||+||||+++.||+.+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 469999999999999999999999987764
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.05 E-value=0.003 Score=66.94 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=29.4
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
++..+++|+||||+||||++..+|..+ +..++.+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345789999999999999999988765 5667766654
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.04 E-value=0.00036 Score=67.49 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+||+|+||||+++.|++.+|+.++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 579999999999999999999999987765
No 134
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00028 Score=66.40 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred cEEEEECCCCchHHHHHHHHHH-HcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIAS-HLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk-elg~~vi 207 (666)
..++|.||||+||||+++.|++ .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 5799999999999999999999 5665554
No 135
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.0033 Score=66.78 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
-++..+++|+||||+||||++..+|.++ |..++.+...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3345789999999999999999988765 6677777653
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.00051 Score=66.38 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=28.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.||+.+++.++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5799999999999999999999999887754
No 137
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.03 E-value=0.00036 Score=66.27 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=26.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+||||+||||+++.||+.+|+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 479999999999999999999999976653
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00041 Score=66.12 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|+|+||+||||+++.||+.+|+.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 579999999999999999999999987664
No 139
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00032 Score=66.44 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..++|+|+||+||||+++.||+.+++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 58999999999999999999999998776
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.0004 Score=66.43 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||||+||||+++.||+.+++.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5899999999999999999999999877643
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00038 Score=66.53 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=27.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHH-cCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASH-LGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke-lg~~viE 208 (666)
..++|+|+|||||||+++.||+. +|+.++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 57999999999999999999999 7877664
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00039 Score=66.12 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=23.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+||||+||||+++.||+.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987
No 143
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00044 Score=67.93 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4789999999999999999999999887754
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.00 E-value=0.00051 Score=66.53 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.+++|.||+|+||||+++.|+..+|..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 689999999999999999999999875553
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.98 E-value=0.002 Score=81.44 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
.++++++|+||||||||++|.++|.+. |..+..+....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 345799999999999999999998775 67777777654
No 146
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00044 Score=66.30 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.||+.+|+.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5899999999999999999999999877643
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.001 Score=66.95 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
..++|.||||+||||+++.|++.++..++.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 68999999999999999999999975444444
No 148
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.97 E-value=0.00043 Score=65.82 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+.++|+|+||+||||+++.|++.+|+.++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5899999999999999999999999877643
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.00049 Score=67.98 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
++++|.||||+||+|.++.||+.+|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 68999999999999999999999998765
No 150
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.95 E-value=0.0052 Score=63.09 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=27.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
..+++|.||||+||||+++.+|..+ |..++.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4689999999999999999998876 446665543
No 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.94 E-value=0.018 Score=68.63 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred ccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHH
Q 005987 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 152 vg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAke 201 (666)
+|++..+++|..||... .. .+++.|+||+|+||||+|+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----d~--~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----RP--AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----CS--SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----CC--CeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999999751 11 268999999999999999999864
No 152
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.93 E-value=0.0018 Score=64.03 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
.+++.|+|||||||++-.+|..+ |+.++-+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 59999999999999998888776 888765544
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.92 E-value=0.00071 Score=63.68 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=26.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..++|.||+|+||||+++.|+..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 689999999999999999999999876554
No 154
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.91 E-value=0.0016 Score=81.51 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=27.1
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
..+++|||||||||||++|+++|.+. |-..+.+..
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~ 1118 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 1118 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEc
Confidence 44679999999999999999999876 334444443
No 155
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.90 E-value=0.01 Score=61.72 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc-----CCcEEEEcCCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPT 213 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel-----g~~viE~nasd 213 (666)
|..+..+++|+||||+||||++..++.+. |..++.+.+..
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 34443589999999999999987766554 56677776543
No 156
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.019 Score=62.37 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+++++|.||+|+||||++..||..+ |.++.-+.+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4789999999999999999999876 7777766544
No 157
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00064 Score=66.43 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|+||||+||||+++.||+++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887754
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.0006 Score=66.55 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.8
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|+||||+||||+++.||+.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999887754
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00067 Score=65.51 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.||+.+|+.++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5799999999999999999999999876653
No 160
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.87 E-value=0.00079 Score=63.72 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=28.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+..++|+|++|+||||+++.|+..+ |+.++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3679999999999999999999998 88777654
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.87 E-value=0.00073 Score=63.01 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=27.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|+|+||+||||+++.|++.+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 589999999999999999999999887753
No 162
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.0051 Score=65.12 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---------CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~viE~nasd 213 (666)
++..++.|+||||+||||+++.+|..+ +..++.++.-.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345789999999999999999999886 24667776543
No 163
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.85 E-value=0.0055 Score=64.65 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---------CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~viE~nasd 213 (666)
++..+++|+||||+|||+++..+|... +..++.+....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345689999999999999999999872 56777776544
No 164
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.85 E-value=0.00063 Score=67.19 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999999877753
No 165
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.0046 Score=61.24 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHH--H--cCCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIAS--H--LGARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAk--e--lg~~viE~na 211 (666)
..++.|.||+|+||||+++.++. . -+..++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 36899999999999999999983 2 2444444443
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.84 E-value=0.00078 Score=66.12 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||||+||||+++.||+.+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4799999999999999999999999877653
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.82 E-value=0.0053 Score=67.31 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.9
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
-.++..++|.||||+||||++..+|..+ |..++.+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3345689999999999999999888764 556766654
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.80 E-value=0.0034 Score=65.64 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---------CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~viE~nasd 213 (666)
++..+++|+||||+|||+++..+|... +..++.+....
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 344689999999999999999999875 56777776654
No 169
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.80 E-value=0.0072 Score=65.51 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.+++|+||||+||||+++.|++.+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 68999999999999999999999987655
No 170
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.007 Score=64.24 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
..++|+||+|+||||++++++..+ +..++.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 489999999999999999999876 345555443
No 171
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.75 E-value=0.0016 Score=65.20 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|+||||+||||+++.|++.+|+.++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5799999999999999999999999877643
No 172
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.055 Score=56.05 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=27.8
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+++++|.||+|+||||++..||..+ +.++.-..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4689999999999999999999876 566655443
No 173
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0032 Score=60.83 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
++.+++||.|+||||++..+|+.+ |..++-+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 689999999999999998888876 77777665
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0098 Score=65.00 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nas 212 (666)
|-.+...++|+|+||+|||+++..+|... |..++.+..-
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44455789999999999999998888754 5567666543
No 175
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.73 E-value=0.001 Score=65.20 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+++|.||||+||+|.++.||+.+|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47889999999999999999999987664
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.0011 Score=65.14 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=26.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..+.|+||+||||||+++.|++.+|+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 479999999999999999999999976653
No 177
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.72 E-value=0.0011 Score=65.91 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.|+||+||||+++.||+.+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4799999999999999999999999877653
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.70 E-value=0.00078 Score=64.21 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
.+++|.||||+||||+++.||..++...+.++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 689999999999999999999987655555553
No 179
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.69 E-value=0.0013 Score=62.77 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=29.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
.++|+||+||||||+++.|++.+ |+.++....+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC
Confidence 58899999999999999999999 99988766554
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.69 E-value=0.024 Score=58.50 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
+++++|.||+|+||||++..||..+ |..+.-+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4689999999999999999999765 556666554
No 181
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.67 E-value=0.00066 Score=64.52 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+.++|.||||+||||+++.|++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999885
No 182
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.00079 Score=66.15 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=26.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..++|.||||+||||+++.||+.+++..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 47999999999999999999999997544
No 183
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0012 Score=63.53 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=29.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-g~~viE~nas 212 (666)
..++|.||+|+||||+++.|++.+ |+.++....+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 579999999999999999999998 6777766544
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.66 E-value=0.0014 Score=62.33 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=29.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
.++|+|++|+||||+++.|++.+ |+.++....+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~ 37 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP 37 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999999999998 8888876543
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0011 Score=63.13 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
++.++|.||+|+||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999763
No 186
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.64 E-value=0.0012 Score=63.42 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=25.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.++|.|++|+||||+++.||+.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999998654
No 187
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.64 E-value=0.0011 Score=64.66 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.9
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|.||||+||||+++.||+.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999887754
No 188
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.60 E-value=0.0016 Score=62.79 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC--cEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~--~viE~na 211 (666)
..++|.||||+||||+++.||+.++. .++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 39 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW 39 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC
Confidence 57999999999999999999999876 3554433
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.60 E-value=0.00045 Score=73.01 Aligned_cols=54 Identities=15% Similarity=0.366 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcCCcEEEEcC
Q 005987 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (666)
Q Consensus 154 ~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg~~viE~na 211 (666)
-.+.++.+...+...+.. |.. ..++|.||||+||||++++||+.+++.++++++
T Consensus 4 ~~~L~~~il~~l~~~i~~--g~~--~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIED--NYR--VCVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp HHHHHHHHHHHHHHTTTT--CSC--EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CCe--eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 345566676776654431 333 369999999999999999999999877765544
No 190
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.59 E-value=0.0014 Score=64.67 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++|.||||+||||+++.||+.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999999999866643
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.59 E-value=0.0074 Score=65.06 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHHc---------CCcEEEEcCCC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAkel---------g~~viE~nasd 213 (666)
.+..+++|+|||||||||+++.+|-.. +..++.++.-+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 345789999999999999999776432 34467766543
No 192
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.58 E-value=0.0082 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++.+|+|+|||.++..++.++
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999998887764
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.57 E-value=0.0014 Score=63.30 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=26.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.+.|+||+||||||+++.||+ +|+.++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 689999999999999999999 99877754
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.55 E-value=0.017 Score=60.10 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-.+...++|.|+||+|||+++..+|... |..++.+..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 44445689999999999999999998765 455665553
No 195
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.53 E-value=0.0017 Score=62.50 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
+++.|+||+|+||||+++.||+.+|+.++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 3799999999999999999999999877753
No 196
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.53 E-value=0.0021 Score=62.16 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=23.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+||||||+++.||..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999998
No 197
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.52 E-value=0.037 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 198
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.51 E-value=0.042 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.|++|+||||++..|....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999998754
No 199
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.50 E-value=0.0018 Score=64.55 Aligned_cols=30 Identities=40% Similarity=0.673 Sum_probs=27.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..+.|.||+||||||+++.||+.+|+.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 479999999999999999999999987664
No 200
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.50 E-value=0.0016 Score=65.11 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..++|.||+|+||||+++.||+.+|+..+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 58999999999999999999999987543
No 201
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.50 E-value=0.029 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+++.|++|+||||++..++..-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.48 E-value=0.0017 Score=65.64 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHH---cCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASH---LGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke---lg~~viE~n 210 (666)
..++|+|+||+||||+++.|++. .|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 58999999999999999999998 687776443
No 203
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0017 Score=65.60 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=28.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||+|+||||+++.||+.+|+.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5799999999999999999999999887753
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0014 Score=63.34 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++.|+||+|+||||+++.||+ +|+.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3689999999999999999998 8887764
No 205
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.47 E-value=0.025 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.++|.|++|+||||++..++..-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 358999999999999999998753
No 206
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.46 E-value=0.043 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999886
No 207
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.45 E-value=0.0029 Score=61.10 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.5
Q ss_pred ccEEEEECCCCchHH-HHHHHHHHHc--CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKT-ATVRQIASHL--GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKT-tla~~LAkel--g~~viE~nas 212 (666)
.+++++|||.|+||| .+++++.+.. +.+++.+.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 379999999999999 7778876644 6777777643
No 208
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.44 E-value=0.04 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999988653
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.43 E-value=0.0018 Score=61.67 Aligned_cols=27 Identities=41% Similarity=0.749 Sum_probs=23.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
.+++|.||+|+||||+++.|+..++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~ 29 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS 29 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe
Confidence 478999999999999999999877653
No 210
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.41 E-value=0.0013 Score=68.98 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=28.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
++++|.||+|+|||+++..||+.++.+++...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 58999999999999999999999998777544
No 211
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.41 E-value=0.011 Score=58.49 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC--CcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg--~~viE~nasd 213 (666)
..++|.||||+||||+++.|++.++ +.++....+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~ 63 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPG 63 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 5899999999999999999999986 5776555444
No 212
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.40 E-value=0.038 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.38 E-value=0.0021 Score=62.08 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.++.|+|++||||||+++.|++.+|+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4788999999999999999999999888753
No 214
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.37 E-value=0.0078 Score=62.67 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHH
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAke 201 (666)
++..+++|+||||+|||+++..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999999875
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.36 E-value=0.0024 Score=64.36 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..+.|.||+||||||+++.||+.+|+..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57999999999999999999999998655
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.35 E-value=0.0017 Score=62.90 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.8
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+++++|.||||+||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36899999999999999999999984
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.31 E-value=0.0059 Score=59.03 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 155 ~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
.+.+++|.+++.... ..++.++.|+||+|+||||+++.|+..+ +..++-.
T Consensus 4 ~~~~~~l~~~~~~~~-----~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 4 RDRIDFLCKTILAIK-----TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHHHHTSC-----CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhc-----cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345666666666421 1123689999999999999999999976 6666544
No 218
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.31 E-value=0.038 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 219
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.31 E-value=0.051 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+++.|++|+||||++..++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 220
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.30 E-value=0.014 Score=62.35 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++||.-+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 589999999999999999999866
No 221
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.29 E-value=0.0041 Score=66.56 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=28.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
++.++|+||||+||||++++||..++..++..+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~ 201 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 201 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEe
Confidence 368999999999999999999999887766533
No 222
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.29 E-value=0.0016 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=23.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+|+||+||||+++.|++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999874
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.25 E-value=0.0021 Score=62.58 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
.+++|.||+|+||||+++.|+..+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999998753
No 224
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.24 E-value=0.0022 Score=61.66 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+.++|+||+|+||||+++.|.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999998863
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.23 E-value=0.02 Score=71.67 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
-.+...++|+||||+||||++..+|.++ +..++.++...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 3455799999999999999999998875 55677766543
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.23 E-value=0.0028 Score=61.86 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=26.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..+.|+|++|+||||+++.|++ +|+.++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4799999999999999999998 88877653
No 227
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.039 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 228
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0028 Score=60.78 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++.|+|++|+||||+++.||+. |+.++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 57999999999999999999998 887764
No 229
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.21 E-value=0.036 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 230
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.20 E-value=0.041 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+++.|++|+||||++..++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.17 E-value=0.002 Score=62.41 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
..++|+|++|+||||+++.|++.+ ++.+..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 589999999999999999999986 45554443
No 232
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.17 E-value=0.0025 Score=60.81 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+++.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998763
No 233
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.16 E-value=0.0043 Score=67.44 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAk 200 (666)
.++.++.|+||||||+++..+++
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999988775
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.14 E-value=0.037 Score=58.17 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-.+...++|.|+||+||||++..+|..+ |..++.++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33445689999999999999999998874 666666554
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.13 E-value=0.033 Score=60.82 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
|-.++..++|.|+||+|||+++..+|... |..++.+..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 33445789999999999999998887765 667776653
No 236
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.12 E-value=0.052 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 237
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.11 E-value=0.003 Score=64.92 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-CCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-GARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-g~~vi 207 (666)
..++|.||||+||||+++.|++.+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 579999999999999999999974 65554
No 238
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.10 E-value=0.0032 Score=60.57 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999863
No 239
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.082 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
-++|.|++|+||||++..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 240
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.05 Score=49.56 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 241
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.07 E-value=0.0034 Score=66.07 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
++++|.||+|+||||++..||+.++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 47999999999999999999999996665443
No 242
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.05 E-value=0.0042 Score=60.53 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=27.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..+.|+|++||||||+++.||+.+|+.++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 469999999999999999999999987764
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.04 E-value=0.0031 Score=60.65 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999987
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.04 E-value=0.0045 Score=61.44 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=27.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
..+.|+|++|+||||+++.||+.+|+.++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 579999999999999999999999987664
No 245
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.03 E-value=0.0095 Score=58.41 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=27.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
++.+++||.|+||||.+..+|..+ |.+++-+...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 688999999999999998887765 7777777643
No 246
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.00 E-value=0.0039 Score=62.61 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=25.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
.++.|+||+|+||||+++.|++.+|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 579999999999999999999999876
No 247
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.00 E-value=0.0045 Score=60.19 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.++.|.||+||||||+++.||+.+|+.++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 48999999999999999999999999887
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.99 E-value=0.0042 Score=60.30 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
++.++|.||+|+||||+++.|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999874
No 249
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.98 E-value=0.071 Score=48.47 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.+++.|++|+||||++..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 250
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.98 E-value=0.082 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.97 E-value=0.046 Score=60.57 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=29.5
Q ss_pred CCCCccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 174 g~~~~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
|-.+...++|.|+||+|||+++..+|..+ |..++.+..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 33455789999999999999999888775 456666654
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.97 E-value=0.0033 Score=60.91 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-CCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-GARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-g~~viE 208 (666)
..+.|+||+|+||||+++.|++.+ ++.++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 578999999999999999999988 665554
No 253
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.95 E-value=0.0038 Score=59.29 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=25.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
..++|.|++|+||||+++.||+.+ |+.+..+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 689999999999999999999987 4444443
No 254
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.95 E-value=0.06 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 255
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.93 E-value=0.0041 Score=63.74 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=26.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..+.|+|++|+||||+++.|+ ++|+.++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 579999999999999999999 689877653
No 256
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.92 E-value=0.057 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-.++|.|++|+||||++..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 257
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.098 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987654
No 258
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.90 E-value=0.077 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..++..-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.90 E-value=0.0096 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=23.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||+++.|+..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999885
No 260
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.89 E-value=0.098 Score=49.94 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999764
No 261
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.89 E-value=0.0042 Score=66.71 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=27.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
++++|.||+|+||||++..||+.++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 6899999999999999999999999776543
No 262
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.86 E-value=0.099 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.+++.|++|+||||++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 263
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.84 E-value=0.046 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEECCCCchHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAk 200 (666)
.++|.|++|+||||++..++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999999864
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0042 Score=60.06 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+.+.|.||+|+||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999998763
No 265
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.063 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.|++|+||||++..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999865
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.82 E-value=0.0057 Score=59.42 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=23.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999885
No 267
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.81 E-value=0.089 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 268
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.80 E-value=0.087 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 269
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.79 E-value=0.069 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 270
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.77 E-value=0.025 Score=60.06 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++-|.||+|+||||++++++.-+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 5899999999999999999998663
No 271
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.014 Score=57.68 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCccEEEEECCCCchHHHHHHHHHHH----cCCcEEEEcC
Q 005987 176 FSTNVLVITGQAGVGKTATVRQIASH----LGARLYEWDT 211 (666)
Q Consensus 176 ~~~k~LLL~GPpG~GKTtla~~LAke----lg~~viE~na 211 (666)
++...++|+|+||+|||+++.-+|.. .+..++.+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 34568999999999999999876543 2556665543
No 272
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.75 E-value=0.13 Score=52.86 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.3
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
++++.++||+|+||||++..||..+ +.++.-....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4688899999999999999999876 6666655543
No 273
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.75 E-value=0.063 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.72 E-value=0.048 Score=69.24 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 175 ~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
-++..+++|+||||+||||++..+|.+. |..++.++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3455799999999999999999998876 45677776543
No 275
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.72 E-value=0.026 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEEECCCCchHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAk 200 (666)
-++|.|++|+||||+++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998863
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.72 E-value=0.2 Score=51.58 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+.++++.||+|+||||++..||..+ |.++.-+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3688899999999999999999876 7777766554
No 277
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.70 E-value=0.079 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 278
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.66 E-value=0.076 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4888999999999999999864
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.64 E-value=0.41 Score=49.69 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+++++|+||+|+||||++..||..+ |.+++-+.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4689999999999999999999876 6777666543
No 280
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.62 E-value=0.18 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 281
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.59 E-value=0.0063 Score=59.20 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC----CcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg----~~viE~n 210 (666)
..++|.|++|+||||+++.|++.++ +.++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 5899999999999999999999874 4455554
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.59 E-value=0.0059 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=23.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999987
No 283
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.59 E-value=0.073 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 284
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.11 Score=49.21 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 285
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.58 E-value=0.065 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999875
No 286
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.57 E-value=0.098 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=9.2
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 287
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.54 E-value=0.19 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 288
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.53 E-value=0.17 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-.+++.|++|+||||++..+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998754
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.52 E-value=0.0077 Score=59.36 Aligned_cols=26 Identities=12% Similarity=0.395 Sum_probs=23.7
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+.++.|.||+|+||||++++|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999999875
No 290
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.51 E-value=0.022 Score=65.25 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
.++...+.|...|.. ....||.||||||||+++-.+..++ +..|+-.
T Consensus 190 LN~~Q~~AV~~al~~----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp CCHHHHHHHHHHHHC----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHhcC----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 377777777776653 1379999999999999876665554 5555443
No 291
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.50 E-value=0.11 Score=47.69 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 292
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.47 E-value=0.0075 Score=58.45 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
+.++|+||+|+|||+++..|++..+ +++
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 6799999999999999999999865 544
No 293
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.47 E-value=0.0086 Score=59.23 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=27.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
.++.|.|++||||||+++.||+.+|+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 489999999999999999999999998764
No 294
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.45 E-value=0.16 Score=55.43 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHH-HHHc
Q 005987 180 VLVITGQAGVGKTATVRQI-ASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~L-Akel 202 (666)
++||.|+||+ ||.+++.+ ++-+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~ 263 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLA 263 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhC
Confidence 6999999999 99999999 6654
No 295
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.45 E-value=0.14 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 296
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.44 E-value=0.15 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 297
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.41 E-value=0.0088 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=23.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999873
No 298
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.40 E-value=0.015 Score=63.03 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=36.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 145 P~sl~eLvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
+-++++|-........++..+.. +..+++|+||+|+||||++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~---------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKR---------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTS---------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHHh---------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 45677877766655555554311 125899999999999999999999884
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.40 E-value=0.021 Score=59.85 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=25.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEE
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYE 208 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE 208 (666)
+.++.|.||+|+||||+++.||..+ +.++.-
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 4789999999999999999999876 445543
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.39 E-value=0.0046 Score=59.83 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=22.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++|.||+|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999984
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.38 E-value=0.0082 Score=58.95 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999977
No 302
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.37 E-value=0.092 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
-++|.|++|+||||++..+...-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999988753
No 303
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.34 E-value=0.16 Score=67.18 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=79.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCchhhhhhhhcccCCccccchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~~~~~e~l~~~~~g~~~~s~~~~f~~fl~~a~~~~~l~~s~~~~~ 258 (666)
.++||.|..|+||++++|..|--.|++++.+.-+. +.....-.+.++.++.++. -.
T Consensus 1647 GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k-------------~Y~~~~f~eDLk~l~~~aG-----------~~ 1702 (3245)
T 3vkg_A 1647 GHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNN-------------NYKSSDFDDDLRMLLKRAG-----------CK 1702 (3245)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHTTCEEECCC-----------------CCHHHHHHHHHHHHHHHH-----------TS
T ss_pred CCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeC-------------CCCHHHHHHHHHHHHHHHh-----------cC
Confidence 57999999999999999999999999999876432 1111112223333443332 12
Q ss_pred CCceEEEEeC--------------------CCCCcchhHHHHHHHHHHH------------------HHhcC--CCceEE
Q 005987 259 KSSAILLIDD--------------------LPVTNGRTAFERLRQCLLL------------------LVRST--HIPTAV 298 (666)
Q Consensus 259 ~~~~IIlIDE--------------------id~l~~~~~~~~l~~~L~~------------------l~~~~--~~PiVi 298 (666)
+++.++|++| +|+++..+.+..+.+.+.. +++.. +..+|+
T Consensus 1703 ~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL 1782 (3245)
T 3vkg_A 1703 EEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVF 1782 (3245)
T ss_dssp CCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEE
Confidence 3567888875 4555544444444332222 22221 346777
Q ss_pred EEecCCCCCCccchhhhhhHHHHHHhhcCeeEEEeCCCCHHHHHHHHHHHHH
Q 005987 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICR 350 (666)
Q Consensus 299 Iit~~~~~~s~d~~~r~l~~L~s~L~r~r~~~I~F~p~s~~~i~kiL~~I~~ 350 (666)
+++..+... ....|.+ +++++ +|.+-=|.+=+.+.+..+-.+.+.
T Consensus 1783 ~mSPvg~~f--R~R~r~f---PaLvn--cctIDWf~~Wp~eAL~~Va~~fl~ 1827 (3245)
T 3vkg_A 1783 TMNPASPDF--HNRSATS---PALFN--RCVLDWFGEWSPEALFQVGSEFTR 1827 (3245)
T ss_dssp EECTTSTTT--TC----C---THHHH--HSEEEEEESCCHHHHHHHHHHHTT
T ss_pred EECCCCHHH--HHHHHHC---hHHhh--CceeeecCCCCHHHHHHHHHHHHh
Confidence 776543221 1122333 34444 378888999998888777666554
No 304
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.34 E-value=0.11 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 305
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.29 E-value=0.19 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||+++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999888765
No 306
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.28 E-value=0.011 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||.|+||||++++++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999987
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.27 E-value=0.0089 Score=56.22 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.8
Q ss_pred cEEEEECCCCchHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIA 199 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA 199 (666)
.++.|.||+|+||||+++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999744
No 308
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.26 E-value=0.07 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.||+|+||||+++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999863
No 309
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.23 E-value=0.086 Score=62.52 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.7
Q ss_pred ccEEEEECCCCchHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAk 200 (666)
..+++|+||.|+||||+++.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 36899999999999999999874
No 310
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.21 E-value=0.06 Score=63.99 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.+++|+||.|+||||+++.+|-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999853
No 311
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.20 E-value=0.012 Score=58.40 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=26.8
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
.|-|.||||+||||.++.||+.+|+..+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 488999999999999999999999887743
No 312
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.18 E-value=0.17 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.14 E-value=0.0074 Score=59.50 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=16.2
Q ss_pred cEEEEECCCCchHHHHHHHHH-HHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIA-SHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA-kelg 203 (666)
.++.|.||+|+||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999 7653
No 314
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.14 E-value=0.3 Score=48.54 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|+||+||||++..|...-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999987654
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.13 E-value=0.011 Score=57.71 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHc
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..++.|.||+|+||||+++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999854
No 316
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.2 Score=47.98 Aligned_cols=23 Identities=48% Similarity=0.752 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 317
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.10 E-value=0.012 Score=59.65 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.||+|+||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 589999999999999999999876
No 318
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.10 E-value=0.019 Score=56.20 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=29.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+..++|.||+|+||||.++.|++.+ |+.++....|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 3689999999999999999999988 56776555443
No 319
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.09 E-value=0.027 Score=58.23 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=25.8
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEE
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYE 208 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE 208 (666)
+.++.|.||+|+||||+++.||..+ +.++.-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4689999999999999999999876 445443
No 320
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.08 E-value=0.077 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-.++|.|++|+||||+++.++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998765
No 321
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.05 E-value=0.094 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998754
No 322
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.04 E-value=0.16 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 323
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.03 E-value=0.34 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
-++|.|++|+||||++..++...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999998887653
No 324
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.00 E-value=0.019 Score=65.26 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=29.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+..++|+|+||+||||+++.|++.+ |+.++.+.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3689999999999999999999999 88877664
No 325
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.00 E-value=0.3 Score=44.16 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEECCCCchHHHHHHHHHHHc
Q 005987 181 LVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel 202 (666)
++|.|++|+||||++..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.00 E-value=0.021 Score=53.97 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=27.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
+.+.|.|++|+||||++..|+..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 589999999999999999999876 66665554
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.98 E-value=0.032 Score=58.18 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++-|.||+||||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 328
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.97 E-value=0.49 Score=43.98 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.|++|+||||++..+...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 358999999999999999987653
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.94 E-value=0.19 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.4
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998653
No 330
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.92 E-value=0.37 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.92 E-value=0.76 Score=49.63 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=28.8
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
++++++|.||+|+||||++..||..+ |..+.-+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 34688899999999999999999877 667766655
No 332
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.91 E-value=0.031 Score=55.33 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=25.4
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
..+.+++||.|+||||.+-.++..+ |.+++-+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999998876665544 66776665
No 333
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.085 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 334
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.82 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.|+||+||||++..++...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998653
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.86 E-value=0.015 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=24.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
.++-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 478999999999999999999988753
No 336
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.86 E-value=0.72 Score=49.97 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=29.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc----CCcEEEEcCCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel----g~~viE~nasd 213 (666)
++.+++.|++|+||||++-.||..+ |.++.-+.+-.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3688899999999999999998765 77887776543
No 337
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.83 E-value=0.26 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=4.3
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988765
No 338
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.83 E-value=0.037 Score=58.63 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=25.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEE
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYE 208 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE 208 (666)
+.++.|.||+|+||||+++.||..+ +..|.-
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 4689999999999999999999976 445443
No 339
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.019 Score=55.75 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=33.6
Q ss_pred cccCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHcC
Q 005987 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 151 Lvg~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
|..+.+..+.++..+.. .+. +.++|.|++|+||||++..|+..+.
T Consensus 11 l~~~~~~~~~~~~~~~~------~~~--~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE------SGT--VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHH------HTC--EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcc------cCc--eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44566667777766653 222 4799999999999999999998863
No 340
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.78 E-value=0.021 Score=59.21 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcEEE
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARLYE 208 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~viE 208 (666)
+..+.|.||+|+||||++++|+..+...|+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 3689999999999999999999998666653
No 341
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.27 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 342
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.77 E-value=0.021 Score=56.55 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=25.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-------CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-------g~~viE~nas 212 (666)
..++|.||+|+||||.++.|++.+ |+.++....|
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 589999999999999999999988 6666655544
No 343
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.77 E-value=0.42 Score=45.85 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36889999999999999998765
No 344
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.77 E-value=0.41 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999988653
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.75 E-value=0.0084 Score=61.74 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|+||+|+||||+++.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999886
No 346
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.73 E-value=0.028 Score=63.47 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
+.++|+|||||||||++..++..+ +..++-.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 589999999999999999998865 6666643
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.70 E-value=0.019 Score=54.44 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=25.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
+.++|+||+|+||||++..|+..+ ++.+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 589999999999999999999875 5555443
No 348
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.69 E-value=0.35 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||+++.++..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 349
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.69 E-value=0.8 Score=41.82 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 350
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.67 E-value=0.088 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.65 E-value=0.021 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..+.|.||+||||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 352
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.62 E-value=0.48 Score=52.22 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=23.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--------CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--------GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--------g~~viE~n 210 (666)
+.+|+.+|+|+|||.++-..+.+. +..++-+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~ 62 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEe
Confidence 359999999999999877666554 55555553
No 353
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.62 E-value=0.036 Score=54.31 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=23.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
.+.+++||-|+||||.+-..+..+ +.+++-++.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 689999999999999543334433 666665553
No 354
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.23 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.+++.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.56 E-value=0.26 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 356
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.023 Score=56.41 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=23.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999993
No 357
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.50 E-value=0.15 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEECCCCchHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAk 200 (666)
-++|.|++|+||||++..++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999853
No 358
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.42 E-value=0.46 Score=44.81 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
-++|.|++|+||||+++.+....
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 59999999999999999877643
No 359
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.36 E-value=0.37 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 360
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.36 E-value=0.26 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEECCCCchHHHHHHHHHHH
Q 005987 181 LVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAke 201 (666)
++|.|.+|||||+++..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 788899999999999998764
No 361
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.32 E-value=0.57 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..++..-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 362
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.31 E-value=0.4 Score=46.14 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~ 209 (666)
..+++++++|.||||+|-.+|-.. |++|.-+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999888765 8888777
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.30 E-value=0.023 Score=60.55 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999876
No 364
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.30 E-value=0.051 Score=59.07 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=28.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+.++|.||+|+||||++..||..+ |.++.-+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 589999999999999999999876 5777766653
No 365
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.27 E-value=0.031 Score=63.80 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..+|.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999988777664
No 366
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.25 E-value=0.012 Score=59.32 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc-CCcE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL-GARL 206 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel-g~~v 206 (666)
..++|.|++|+||||+++.|++.+ ++.+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 589999999999999999999998 4433
No 367
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.22 E-value=0.23 Score=54.06 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=28.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
.+||.||+|+|||.++-.++..++..++-+-+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999998888888777766543
No 368
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.22 E-value=0.021 Score=56.76 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++++.-+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999998763
No 369
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.17 E-value=0.022 Score=57.82 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.2
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+++|+||||+||||++..+|..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 370
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.14 E-value=0.26 Score=57.70 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.6
Q ss_pred ccEEEEECCCCchHHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAke 201 (666)
+.+++|+||.|+||||+++.++--
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 368999999999999999999864
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.14 E-value=0.028 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=25.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC--cEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~--~viE~n 210 (666)
.+++|.||+|+||||++++++..+.. .++.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 46999999999999999999988732 344444
No 372
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.13 E-value=0.67 Score=50.90 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--------CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--------GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--------g~~viE~n 210 (666)
+.+|+.+|+|+|||.++-..+.+. +..++-+-
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~ 59 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEe
Confidence 469999999999999877666554 55555554
No 373
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.13 E-value=0.053 Score=54.01 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=27.9
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCc-EEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GAR-LYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~-viE~nas 212 (666)
+..++|.||+|+||||.++.|++.+ |+. ++....|
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 3689999999999999999999987 556 4444433
No 374
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.13 E-value=0.87 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999998764
No 375
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.13 E-value=0.021 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999997663
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.09 E-value=0.029 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
...+|+||.|+||||++.+|+-.++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 48899999999999999999998863
No 377
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.09 E-value=0.23 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999998743
No 378
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.32 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 379
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.05 E-value=0.043 Score=53.88 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~ 209 (666)
..++|.||+|+||||.++.|++.++..+..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 5899999999999999999999998644333
No 380
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.03 E-value=0.035 Score=61.52 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=24.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
..++|+|++||||||++++||+.|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999985
No 381
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.01 E-value=0.025 Score=56.35 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998875
No 382
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.00 E-value=0.028 Score=58.45 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 5899999999999999999999873
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.98 E-value=0.027 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=23.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999876
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.051 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..++|.|++|+||||++..++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998764
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.92 E-value=0.023 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+.|.||+|+||||+++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 386
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.34 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..++..-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 387
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.92 E-value=0.023 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
.++.|.||+|+||||++++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999875
No 388
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.91 E-value=0.83 Score=43.86 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-++|.|++|+||||++..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.90 E-value=0.046 Score=53.09 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 153 g~~k~i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-++...+.++..+.. .+. ..++|.|++|+||||++..++..+
T Consensus 21 ~~~~~a~~~r~~~~~------~~~--~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 21 ANKRLADKNRKLLNK------HGV--VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHH------TTC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh------CCC--eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345555666665543 222 468888999999999999999886
No 390
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.87 E-value=0.041 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.+++|.|+||+||||+++.||+.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999984
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.82 E-value=0.027 Score=56.95 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998663
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.79 E-value=0.031 Score=55.84 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998763
No 393
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.78 E-value=0.32 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999764
No 394
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.73 E-value=0.027 Score=55.27 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999988763
No 395
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.73 E-value=0.07 Score=52.22 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=27.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CC-cEEEEcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GA-RLYEWDTP 212 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~-~viE~nas 212 (666)
..++|.|++|+||||.++.|++.+ |+ .++....|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 589999999999999999999987 55 55444433
No 396
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.73 E-value=0.029 Score=59.43 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++||.-+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999999876
No 397
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.72 E-value=0.24 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.7
Q ss_pred cEEEEECCCCchHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIA 199 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA 199 (666)
+.+++.+|+|+|||.++-..+
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 468999999999999754433
No 398
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.71 E-value=0.037 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-+.|++|+||+|||+.+..++.+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999998776544
No 399
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.71 E-value=0.036 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
.++.|.||+|+||||++++|+.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999985
No 400
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.71 E-value=0.034 Score=52.99 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred EEEECCCCchHHHHHHHHHHHcCCcEEEEcCC
Q 005987 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkelg~~viE~nas 212 (666)
+|++|++|+|||++|..+|.. +..++.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 789999999999999999988 8888887654
No 401
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.70 E-value=0.034 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
.++.|.||+|+||||++++|+.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999985
No 402
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.70 E-value=0.044 Score=51.83 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
+.+||+||+|+||||++..|.+. |+.++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 57999999999999999999884 65543
No 403
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.68 E-value=0.32 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 404
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.65 E-value=0.031 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||.|+||||++++++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5899999999999999999998763
No 405
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.63 E-value=0.031 Score=56.38 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999998763
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.61 E-value=0.081 Score=55.82 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=26.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~n 210 (666)
..+.|+|+||+||||++..|+..+ |.++.-+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 479999999999999999999886 66655443
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.60 E-value=0.031 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++|+.-+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999876
No 408
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.59 E-value=0.032 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+.-+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999998663
No 409
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.59 E-value=0.33 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
.+++|+||+|+||||+++.+|--
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 68999999999999999999864
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.56 E-value=0.034 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+.-+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 5899999999999999999998763
No 411
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.55 E-value=0.034 Score=58.71 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+||||||++++||.-+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 5899999999999999999998663
No 412
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.55 E-value=0.032 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+.-+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999988763
No 413
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.54 E-value=0.05 Score=63.79 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+..+|.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999988777664
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.54 E-value=0.033 Score=55.62 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++|+.-+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999865
No 415
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.51 E-value=0.36 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|+.|.+|+|||++++.+...+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987766
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.50 E-value=0.036 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+||||||++++||.-+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999998663
No 417
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.50 E-value=0.037 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+||||||++++||.-+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 5899999999999999999998763
No 418
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.49 E-value=0.037 Score=59.07 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+||||||++++||.-+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 5899999999999999999998763
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.47 E-value=0.25 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAk 200 (666)
.++|.|++|+||||++..+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999999864
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.49 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-.++|.|++|+||||++..+...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999853
No 421
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.44 E-value=0.035 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999988764
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.44 E-value=0.038 Score=58.61 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++||.-+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 579999999999999999999866
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.40 E-value=0.036 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+..+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998763
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.39 E-value=0.037 Score=55.92 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++|+.-+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998765
No 425
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.038 Score=55.76 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+.-+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998763
No 426
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.35 E-value=0.07 Score=60.16 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=23.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+|++|+||||+++.|++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999986
No 427
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.35 E-value=0.037 Score=56.59 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5799999999999999999998763
No 428
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=93.34 E-value=0.76 Score=53.74 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=24.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--------CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--------GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--------g~~viE~n 210 (666)
+.+|+.+|+|+|||.++-..+.+. +..++-+.
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEe
Confidence 369999999999999877766655 55565554
No 429
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.34 E-value=0.045 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 589999999999999999999 653
No 430
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.33 E-value=0.037 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++++.-+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999866
No 431
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.33 E-value=0.48 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++.+|+|+|||.++-..+-+.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 359999999999999876666554
No 432
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.26 E-value=0.042 Score=58.59 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+||||||++++||.-+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 589999999999999999999866
No 433
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.26 E-value=0.05 Score=57.62 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~ 205 (666)
..+.|.||+|+||||++++|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 579999999999999999999988653
No 434
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.19 E-value=0.041 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++.|.||+|+||||++++++.-+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999998865
No 435
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.19 E-value=0.041 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+|+||||++++++.-+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5799999999999999999998763
No 436
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.18 E-value=0.035 Score=58.77 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++||.-+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999999865
No 437
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.18 E-value=0.042 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 5899999999999999999987654
No 438
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.16 E-value=0.063 Score=52.45 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=26.8
Q ss_pred EEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
.+-|+|..||||||+++.|++ +|+.++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 689999999999999999998 999888543
No 439
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.10 E-value=0.047 Score=60.11 Aligned_cols=30 Identities=33% Similarity=0.635 Sum_probs=25.2
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEE
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLY 207 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~vi 207 (666)
+.+++|.||+|+||||+++.||..+ +..|.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 3689999999999999999999876 44544
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.08 E-value=0.052 Score=53.59 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC----cEEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA----RLYE 208 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~----~viE 208 (666)
..++|.|++|+||||.++.|++.++. .++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 68999999999999999999998643 5555
No 441
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.07 E-value=0.47 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||++..+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998653
No 442
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.07 E-value=0.89 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+|+.+|+|+|||.++-..+.+.
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Confidence 359999999999999987777665
No 443
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.03 E-value=0.049 Score=61.91 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=20.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.++++|||||||||++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999988776654
No 444
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.03 E-value=0.038 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+..+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5799999999999999999986553
No 445
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.01 E-value=1.3 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.0
Q ss_pred ccEEEEECCCCchHHHHHHHHHHH
Q 005987 178 TNVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAke 201 (666)
...+.|.|+||+||||++..|...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998764
No 446
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.00 E-value=0.035 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|.||+|+||||++++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999999999874
No 447
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.98 E-value=0.11 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=29.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--CCcEEEEcCCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--GARLYEWDTPT 213 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--g~~viE~nasd 213 (666)
+.+.|-|+.|+||||.++.|++.+ |+.++....|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPG 39 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESST
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCC
Confidence 468899999999999999999988 67777665543
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.94 E-value=0.043 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=23.4
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
.++.|.||+||||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5799999999999999999999984
No 449
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.92 E-value=0.16 Score=54.99 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHH-HHHHH---HcCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATV-RQIAS---HLGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla-~~LAk---elg~~viE~n 210 (666)
+.+|+.||+|+|||.++ ..+.+ .-|..++-+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 58999999999999986 43442 2355666554
No 450
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.86 E-value=0.05 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+.|.||+|+||||++++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 451
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.85 E-value=0.049 Score=58.38 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++||.-+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 589999999999999999999754
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.84 E-value=0.047 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+|+||||++++++..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999876
No 453
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.83 E-value=1.6 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+|+.+|+|+|||.++-.++.+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~~ 52 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEHH 52 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHHH
Confidence 469999999999999887766543
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.83 E-value=0.05 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.||+|+||||+++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999864
No 455
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.80 E-value=0.91 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++.||+|+||||++..++.+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999877775543
No 456
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.79 E-value=0.15 Score=58.71 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHH-HHc--CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIA-SHL--GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA-kel--g~~viE~n 210 (666)
+.++++||+|+|||+++-..+ +.+ +..++.+.
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 579999999999999984433 333 55555554
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.68 E-value=0.87 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
-.++|.|++|+||||++.++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998654
No 458
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.07 Score=62.59 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=19.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+++.||||||||+++..++..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999987665543
No 459
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.64 E-value=0.095 Score=56.56 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCccEEEEECCCCchHHHHHHHHHHHc
Q 005987 158 VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 158 i~el~~wL~~~~~~~~g~~~~k~LLL~GPpG~GKTtla~~LAkel 202 (666)
...+++.|+..... ...+.|.||+|+||||++++|+..+
T Consensus 55 ~~~i~~~L~~~~~~------~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 55 NSAISDALKEIDSS------VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHC------CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred chhhhhhhhhcccC------CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455555544321 1378999999999999999999843
No 460
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.61 E-value=0.27 Score=55.79 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=21.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
+.+.|.||+|+||||++++|+..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998754
No 461
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.59 E-value=0.19 Score=55.61 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=27.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel---g~~viE~na 211 (666)
+.++|.|+||+||||++..||..+ |.++.-+.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 589999999999999999999776 777766654
No 462
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.55 E-value=0.65 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.8
Q ss_pred cEEEEECCCCchHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIAS 200 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAk 200 (666)
+.+++.+|+|+|||.++-..+-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999997654443
No 463
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.48 E-value=0.6 Score=56.12 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred cEEEEECCCCchHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIA 199 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA 199 (666)
.+++|+||.|+||||+++.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999984
No 464
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.46 E-value=0.071 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
...+|+||.|+|||+++.++.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998766
No 465
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.45 E-value=0.072 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.+++.|++|+||||++..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 466
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.45 E-value=0.054 Score=55.63 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||.|+||||++++|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998876
No 467
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.39 E-value=0.067 Score=53.41 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
.++.|+|++|+||||+++.|+..+|+.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 36889999999999999999999997763
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.39 E-value=0.073 Score=52.38 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=26.2
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHcCCcEEEEc
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkelg~~viE~n 210 (666)
+..+.|.||.|+||||+++.|+.. +..+.-..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~ 51 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDICLLT 51 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence 368999999999999999999987 65555444
No 469
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.36 E-value=0.04 Score=57.71 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=26.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC--cEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~--~viE~na 211 (666)
..++|.||+|+||||++++|+..+.. ..+.++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 47999999999999999999998742 3444543
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.34 E-value=0.14 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHHHHHHHc---CCcEEEEcCCC
Q 005987 181 LVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (666)
Q Consensus 181 LLL~GPpG~GKTtla~~LAkel---g~~viE~nasd 213 (666)
+.|-|+-|+||||.++.|++.| |..++....|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6789999999999999999887 78888776665
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.26 E-value=0.058 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-++|.|++||||||+++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999863
No 472
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.12 E-value=0.19 Score=62.35 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=23.7
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
..+.|.||+|+||||++++|.+.+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cEEEEEecCCCcHHHHHHHhcccccc
Confidence 68999999999999999999998844
No 473
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.08 E-value=0.074 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||+++.++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 474
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.07 E-value=0.076 Score=58.28 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|.|.||+||||+++.||+.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999875
No 475
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.05 E-value=0.066 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..+.|.||+|+||||++++|+..+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 5899999999999999999998764
No 476
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.92 E-value=0.15 Score=50.69 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc--CCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL--GARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel--g~~viE~n 210 (666)
.++++.|.+|+||||++..||..+ |.++.-++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 689999999999999999999776 66666555
No 477
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.86 E-value=0.12 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..+.|.||+|+||||+++.|+..+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 47999999999999999999999866543
No 478
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.76 E-value=1.9 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
-++|.|+||+||||++..+...
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 479
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.76 E-value=0.11 Score=50.42 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=25.1
Q ss_pred CccEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 177 STNVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 177 ~~k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
|..+++|+|.||+||++++..+.+.+|.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 4579999999999999999999988864
No 480
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=91.71 E-value=0.5 Score=51.53 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=22.2
Q ss_pred cEEEEECCCCchHHHH-HHHHHHH---cCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTAT-VRQIASH---LGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtl-a~~LAke---lg~~viE~n 210 (666)
+.+|+.||+|+|||++ +-.+... -+..++.+.
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~ 57 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLA 57 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 5899999999999997 3343332 255565554
No 481
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.71 E-value=0.093 Score=55.06 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=22.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||||+||||++++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999765
No 482
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.35 E-value=0.097 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..++|.|++|+||||+++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 483
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.29 E-value=0.11 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHHHc
Q 005987 180 VLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel 202 (666)
.++|.|++|+||||++..+....
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988753
No 484
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.26 E-value=0.14 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLG 203 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg 203 (666)
..++|+|++|+||||+++.|++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999999874
No 485
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.24 E-value=0.15 Score=55.44 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEE
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~vi 207 (666)
..+.|.||+||||||+++.||........
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 47999999999999999999999865543
No 486
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.18 E-value=0.56 Score=54.06 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHH-HH---cCCcEEEEc
Q 005987 179 NVLVITGQAGVGKTATVRQIA-SH---LGARLYEWD 210 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LA-ke---lg~~viE~n 210 (666)
+.+|++||+|+|||+.+-..+ +. -+..++.+.
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999999984443 22 255555544
No 487
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.14 E-value=0.84 Score=48.69 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=25.2
Q ss_pred EEEEECCCCchHHHHHHHHHHHc----CCcEEEEcC
Q 005987 180 VLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAkel----g~~viE~na 211 (666)
.+|+.+|+|+|||.++-.++.++ +..++-+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 58999999999999998887765 556665543
No 488
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.08 E-value=0.28 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.|+||+||||++..|+..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999865
No 489
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.03 E-value=0.37 Score=54.93 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCCcEEEEcCCCc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~~viE~nasd~ 214 (666)
.+.+|+|++|.|||+++-.++..+...+ -+.+|..
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~~~-~vtAP~~ 227 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAGRA-IVTAPAK 227 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSSCE-EEECSSC
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCc-EEECCCH
Confidence 4689999999999999999999886553 5566653
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.87 E-value=0.093 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
++++|+||.|+||||+++.|+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 489999999999999999999865
No 491
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.1 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=22.0
Q ss_pred cEEEEECCCCchHHHHHHHHHHHc
Q 005987 179 NVLVITGQAGVGKTATVRQIASHL 202 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkel 202 (666)
..+.|.||+||||||++++|+.-+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 479999999999999999999865
No 492
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.70 E-value=0.21 Score=52.58 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.5
Q ss_pred ccEEEEECCCCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 178 ~k~LLL~GPpG~GKTtla~~LAkel---g~~viE~nas 212 (666)
..+++++|..|+||||++..+|..+ |.+++-+++-
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3688999999999999999988776 8888877653
No 493
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.64 E-value=0.44 Score=48.89 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECC-CCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQ-AGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GP-pG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+.++.|+.-|.-... +.. .++++++|+ +|+||||++..||..+ |.+|+-+++-
T Consensus 86 Ea~r~lrt~l~~~~~---~~~-~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 86 EAVRALRTSLHFAMM---ETE-NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp HHHHHHHHHHHHHTS---SCS-CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhcc---CCC-CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 456666666654322 222 268888887 8999999998888876 7888877653
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.62 E-value=0.12 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
-.++|.|+||+||||++..++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999875
No 495
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.58 E-value=0.059 Score=51.53 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.1
Q ss_pred cEEEEECCCCchHHHHHHHHHHH
Q 005987 179 NVLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAke 201 (666)
..+.|.|++|+||||+++.++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999988643
No 496
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.54 E-value=0.47 Score=47.93 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEECC-CCchHHHHHHHHHHHc---CCcEEEEcCC
Q 005987 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQ-AGVGKTATVRQIASHL---GARLYEWDTP 212 (666)
Q Consensus 156 k~i~el~~wL~~~~~~~~g~~~~k~LLL~GP-pG~GKTtla~~LAkel---g~~viE~nas 212 (666)
+.++.|+.-|.-... ++. .+.++++|+ +|+||||++..||..+ |.+|+-+++-
T Consensus 64 Ea~r~lrt~l~~~~~---~~~-~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 64 EKFRGIRSNIMFANP---DSA-VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHSST---TCC-CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHhhcc---CCC-CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 556666666654221 222 367888876 8999999999888876 7888877653
No 497
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.53 E-value=0.51 Score=54.46 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHH-HHHHHc---CCcEEEEcC
Q 005987 179 NVLVITGQAGVGKTATVR-QIASHL---GARLYEWDT 211 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~-~LAkel---g~~viE~na 211 (666)
+.+|++||+|+|||+++. .+.+.+ +..++.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 589999999999999873 333222 556665543
No 498
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.52 E-value=0.13 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.++|.|++|+||||+++.++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.47 E-value=0.14 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.3
Q ss_pred cEEEEECCCCchHHHHHHHHHHHcCC
Q 005987 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (666)
Q Consensus 179 k~LLL~GPpG~GKTtla~~LAkelg~ 204 (666)
...+|+||.|+||||++.+|.-.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 58999999999999999999887754
No 500
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.46 E-value=0.88 Score=49.02 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHHH
Q 005987 180 VLVITGQAGVGKTATVRQIASH 201 (666)
Q Consensus 180 ~LLL~GPpG~GKTtla~~LAke 201 (666)
.+.|.||||+||||++++|+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5889999999999999999875
Done!