BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005989
         (666 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R0A|A Chain A, Possible Transcriptional Regulator From Methanosarcina
           Mazei Go1 (gi 21227196)
 pdb|3R0A|B Chain B, Possible Transcriptional Regulator From Methanosarcina
           Mazei Go1 (gi 21227196)
          Length = 123

 Score = 38.1 bits (87), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 227 ALVKALKMELDHSQTKIKELLQEKQTERQEVN-DLMKQVAEEKIIRKDKERNRIKAAVQS 285
           AL K+LK+++   Q  +K+L +++  +R + N D    V   KI  K++ RN I+  VQS
Sbjct: 47  ALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQS 106

Query: 286 WKDELEDERK 295
           W D L  E K
Sbjct: 107 WADRLGQELK 116


>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
           Tarantula Muscle Thick Filament Cryo-Em 3d-Map
          Length = 971

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAA 282
           LK  L+ S+ + KEL ++  +  QE NDL  QV         AEE+  +  K + +++A 
Sbjct: 869 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 928

Query: 283 VQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI 321
           V+   + LEDE ++     +  RKL  + S++K    ++
Sbjct: 929 VKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 967


>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
           Tarantula Muscle Thick Filament Cryo-Em 3d-Map
          Length = 973

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAA 282
           LK  L+ S+ + KEL ++  +  QE NDL  QV         AEE+  +  K + +++A 
Sbjct: 869 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 928

Query: 283 VQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI 321
           V+   + LEDE ++     +  RKL  + S++K    ++
Sbjct: 929 VKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 967


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,564,368
Number of Sequences: 62578
Number of extensions: 738029
Number of successful extensions: 1927
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1882
Number of HSP's gapped (non-prelim): 54
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)