BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005989
(666 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
GN=At5g41620 PE=1 SV=2
Length = 623
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 249/615 (40%), Positives = 347/615 (56%), Gaps = 77/615 (12%)
Query: 66 IPTTTTVSARKLCATLWEIHPQPHH-------------HHTSLAKMPNPKSSHFNHNSR- 111
+P + VS+RKL A WE H Q H+ + + PN + + R
Sbjct: 40 VPNSIVVSSRKLAAAFWEFH-QYHYKDEEDCSYSYLSSASAKMHRGPNGFAGASSRRQRH 98
Query: 112 ---------PFNLPNYVRHPPTCSPHPHPRQPESASGSRRHLSASLMKHHESVERNGHAL 162
+L ++R P SP QP+SA RR + L+KHH+S++RN HAL
Sbjct: 99 GKAVAVKENGLDLSQFLRDP---SPD---HQPDSAGSLRRQIGQMLIKHHQSIDRNNHAL 152
Query: 163 QPVSPASYDNSMEVAAYNPAVTPTSSLDSRGKLGK-PRYNLKTSTELLTVLNRIWSLEEQ 221
QPVSPASY +S+EV YN AVTP+SSL+ RG+ + P YNLKTSTELL VLNRIWSLEEQ
Sbjct: 153 QPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQ 212
Query: 222 HVSDIALVKALKMELDHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKA 281
HVS+I+L+KALK E+ HS+ +IKELL+ +Q +R E++ ++KQ+AEEK++ K+KE R+ +
Sbjct: 213 HVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSS 272
Query: 282 AVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLENLCDE 341
AVQS + LEDERKLRK SESLHRK+AR+LS++KSS SN +KELER K+ ++E LCDE
Sbjct: 273 AVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDE 332
Query: 342 FAKGIRDYEEEVRLLRHKP-EMDHAHMKNADRLILHISESWLDERMQMKIAETQNSLSDK 400
FAKGI+ YEEE+ L+ K + D A D+L+LHI+ESWLDERMQM++ E ++L+ K
Sbjct: 333 FAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGK 391
Query: 401 N-TILDKLRLDIENFLQAKHFSKSRTGGSLSTNEQKKSHSSRHSTESFPLNEAVSAPRDT 459
N ++LDKL ++IE FLQ K R + R+S ES P N + PRD
Sbjct: 392 NRSVLDKLEVEIETFLQEKRNEIPR--------------NRRNSLESVPFNTLSAPPRDV 437
Query: 460 VNEEYSTDVDLQVLELNKSASRKQSRGS-SKQHGDSARKGHLEELVNSNSGKKKVRSRKR 518
EE S D EL K A +S G +K+ + G ++E S S +
Sbjct: 438 DCEEDSGGSDSNCFELKKPA---ESYGDETKKPNQHNKDGSIDEKPKSPSSFQV------ 488
Query: 519 NKGHNLSSLPGWFHEHVTR---TESQFPDWERGELEGETGATEESKHNGAGGLKLNHVVD 575
N W + T + + E +++ E + N N V+
Sbjct: 489 ----NFEDQMAWALSSNGKKKTTRAIEDEEEEEDVKPENSNNNKKPENECATTNKNDVMG 544
Query: 576 DLIRNHSLSSEGDKVHPETDLKEDSHVQSLFTS---HGSPVQKWMSKLTSPDFEKSESSL 632
++IR H ++ ET +E F S SPV++W+S+ +PD S +
Sbjct: 545 EMIRTHR------RLLSET--REIDEASCNFPSSRRQASPVRQWISRTVAPDL-LGPSEI 595
Query: 633 KVPRGLKVNTLKEKL 647
+ G+K NTLK KL
Sbjct: 596 AIAHGVKDNTLKTKL 610
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 OS=Caenorhabditis elegans
GN=ifa-2 PE=1 SV=1
Length = 581
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 192 RGKLGKPRYNLKT--STELLTVLNRIWSLEEQHVSDIALVKALKMELDHSQTKIKELLQE 249
+G+ GK ++K E+ T N + + H ++ L+ +LD + K +E +
Sbjct: 107 QGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRG 166
Query: 250 KQTERQEVNDLM--------------KQVA--EEKIIRKDKERNRIKAAVQSWKDELEDE 293
+ +R +++DL+ +++A EE++ R KE R+ + +Q + EL+ E
Sbjct: 167 RAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELDQE 226
Query: 294 RKLRKCSESLHRKLARDLSDMKSSFSNILKELERERKARILLEN---LCDEFAKGIRDYE 350
LR +++ + + ++ MK F LKEL+ + EN +E A +RD
Sbjct: 227 TLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANAMRDIR 286
Query: 351 EEVRLLRHKPEMDHAHMKNADRLILHISESWLDERMQ 387
E + + N +R + ESW R+Q
Sbjct: 287 AE-----------YDQIMNGNR---NDMESWYQLRVQ 309
>sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus GN=Myh3 PE=2 SV=1
Length = 1940
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 24/197 (12%)
Query: 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAAV 283
K EL S+ K KEL ++ T QE NDL QV AEE+ + K + +++A +
Sbjct: 861 KDELAKSEAKRKELEEKLVTLVQEKNDLQLQVQAESENLLDAEERCDQLIKAKFQLEAKI 920
Query: 284 QSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKA-RILLENLC 339
+ + EDE ++ + RKL + S++K ++ L ++E+E+ A ++NL
Sbjct: 921 KEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLT 980
Query: 340 DEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILH----ISESWLDERMQMKIAETQN 395
+E A G+ E +L R K + AH + D L S S L +++ ++ + ++
Sbjct: 981 EELA-GLD--ETIAKLTREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLES 1037
Query: 396 SLSDKNTILDKLRLDIE 412
SL + KLR+D+E
Sbjct: 1038 SLEQEK----KLRVDLE 1050
>sp|P13541|MYH3_MOUSE Myosin-3 OS=Mus musculus GN=Myh3 PE=2 SV=2
Length = 1940
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 24/197 (12%)
Query: 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAAV 283
K EL S+ K KEL ++ T QE NDL QV AEE+ + K + +++A +
Sbjct: 861 KDELAKSEAKRKELEEKLVTLVQEKNDLQLQVQAESENLLDAEERCDQLIKAKFQLEAKI 920
Query: 284 QSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKA-RILLENLC 339
+ + EDE ++ + RKL + S++K ++ L ++E+E+ A ++NL
Sbjct: 921 KEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLT 980
Query: 340 DEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRLILH----ISESWLDERMQMKIAETQN 395
+E A G+ E +L R K + AH + D L S S L +++ ++ + ++
Sbjct: 981 EELA-GLD--ETIAKLTREKKALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLES 1037
Query: 396 SLSDKNTILDKLRLDIE 412
SL + KLR+D+E
Sbjct: 1038 SLEQEK----KLRVDLE 1050
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 OS=Caenorhabditis elegans
GN=ifa-3 PE=1 SV=1
Length = 581
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 242 KIKELLQEKQTERQEVNDLMKQVA--EEKIIRKDKERNRIKAAVQSWKDELEDERKLRKC 299
KI ELL E+N L +++A EE++ R KE R+ + +Q + EL+ E LR
Sbjct: 173 KIDELLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRSELDQETLLRID 232
Query: 300 SESLHRKLARDLSDMKSSFSNILKELERERKARILLEN---LCDEFAKGIRDYEEEVRLL 356
+++ + ++ MK F LK+L+ + EN +E IRD
Sbjct: 233 NQNKVTTILEEIDFMKRGFETELKDLQAQAARDTTSENREYFKNELMNSIRDI------- 285
Query: 357 RHKPEMDHAHMKNADRLILHISESWLDERMQ 387
+ E D N + L ESW R+Q
Sbjct: 286 --RAEYDRFMAGNRNDL-----ESWSQIRVQ 309
>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1
Length = 1043
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 256 EVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMK 315
EV +K + E +K R R++ A++ +EL + L + SE R+LA L D K
Sbjct: 151 EVLKALKSLFEHHKALDEKVRERLRMALE---NELASKESLYRQSEEKSRQLAEWLDDAK 207
Query: 316 SSFSNILK------ELERERKARILLENLCDE----FAKGIRDYE-------EEVRLLRH 358
L+ E+E + R+ N +E F + +R E +E++ R
Sbjct: 208 QKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQRARQ 267
Query: 359 KPEMDHAHMK----NADRLILHISESWLDERMQMKIAETQNSLSDKNTILDKL 407
+ +M+ H K D+L+ SES +ER+Q+ + E +L +KN++ +++
Sbjct: 268 REKMNDDHNKRLSETVDKLL---SES--NERLQLHLKERMGALEEKNSLSEEI 315
>sp|Q9BE39|MYH7_BOVIN Myosin-7 OS=Bos taurus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 20/166 (12%)
Query: 225 DIALVKA----LKMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIR 271
+IAL+K LK L+ S+ + KEL ++ + QE NDL QV AEE+ +
Sbjct: 848 EIALMKEEFGRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQ 907
Query: 272 KDKERNRIKAAVQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERE 328
K + +++A V+ + LEDE ++ + RKL + S++K ++ L ++E+E
Sbjct: 908 LIKNKIQLEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKE 967
Query: 329 RKA-RILLENLCDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373
+ A ++NL +E A G+ + +L + K + AH + D L
Sbjct: 968 KHATENKVKNLTEEMA-GLDEI--IAKLTKEKKALQEAHQQALDDL 1010
>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3
Length = 1194
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 93/192 (48%), Gaps = 27/192 (14%)
Query: 237 DHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKL 296
+ + +K++ L+E +R+++ + + + E++ + +E + A ++EL + L
Sbjct: 281 EEANSKLQRDLKEALAQREDMEERITTL-EKRYLSAQREATSLHDANDKLENELASKESL 339
Query: 297 RKCSESLHRKLARDLSDMKSSFSNILK------ELERERKARILLENLCDE----FAKGI 346
+ SE R+LA L D K L+ E+E + R+ N +E F + +
Sbjct: 340 YRQSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERL 399
Query: 347 RDYE-------EEVRLLRHKPEMDHAHMK----NADRLILHISESWLDERMQMKIAETQN 395
R E +E++ R + +M+ H K D+L+ SES +ER+Q+ + E
Sbjct: 400 RQLEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLL---SES--NERLQLHLKERMG 454
Query: 396 SLSDKNTILDKL 407
+L +KN++ +++
Sbjct: 455 ALEEKNSLSEEI 466
>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2
Length = 1192
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 27/188 (14%)
Query: 237 DHSQTKIKELLQEKQTERQEVNDLMKQVAEEKIIRKDKERNRIKAAVQSWKDELEDERKL 296
+ + +K++ L+E +R+++ + + + E++ + +E + A ++EL + L
Sbjct: 281 EEANSKLQRDLKEALAQREDMEERITTL-EKRYLSAQREATSLHDANDKLENELASKESL 339
Query: 297 RKCSESLHRKLARDLSDMKSSFSNILK------ELERERKARILLENLCDE----FAKGI 346
+ SE R+LA L D K L+ E+E + R+ N +E F + +
Sbjct: 340 YRQSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERL 399
Query: 347 RDYE-------EEVRLLRHKPEMDHAHMK----NADRLILHISESWLDERMQMKIAETQN 395
R E +E++ R + +M+ H K D+L+ SES +ER+Q+ + E
Sbjct: 400 RQLEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLL---SES--NERLQLHLKERMG 454
Query: 396 SLSDKNTI 403
+L +KN++
Sbjct: 455 ALEEKNSL 462
>sp|P02564|MYH7_RAT Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=2 SV=2
Length = 1935
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 236 LDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAAVQSW 286
L+ S+ + KEL ++ + QE NDL QV AEE+ + K + +++A V+
Sbjct: 863 LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 922
Query: 287 KDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKA-RILLENLCDEF 342
+ LEDE ++ + RKL + S++K ++ L ++E+E+ A ++NL +E
Sbjct: 923 TERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEM 982
Query: 343 AKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373
A G+ + V+L + K + AH + D L
Sbjct: 983 A-GLDEI--IVKLTKEKKALQEAHQQALDDL 1010
>sp|Q91Z83|MYH7_MOUSE Myosin-7 OS=Mus musculus GN=Myh7 PE=1 SV=1
Length = 1935
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 236 LDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAAVQSW 286
L+ S+ + KEL ++ + QE NDL QV AEE+ + K + +++A V+
Sbjct: 863 LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 922
Query: 287 KDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKA-RILLENLCDEF 342
+ LEDE ++ + RKL + S++K ++ L ++E+E+ A ++NL +E
Sbjct: 923 TERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEM 982
Query: 343 AKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373
A G+ + V+L + K + AH + D L
Sbjct: 983 A-GLDEI--IVKLTKEKKALQEAHQQALDDL 1010
>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5
Length = 1935
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 232 LKMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAA 282
LK L+ S+ + KEL ++ + QE NDL QV AEE+ + K + +++A
Sbjct: 859 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 918
Query: 283 VQSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKA-RILLENL 338
V+ + LEDE ++ + RKL + S++K ++ L ++E+E+ A ++NL
Sbjct: 919 VKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNL 978
Query: 339 CDEFAKGIRDYEEEVRLLRHKPEMDHAHMKNADRL 373
+E A G+ + +L + K + AH + D L
Sbjct: 979 TEEMA-GLDEI--IAKLTKEKKALQEAHQQALDDL 1010
>sp|P11055|MYH3_HUMAN Myosin-3 OS=Homo sapiens GN=MYH3 PE=1 SV=3
Length = 1940
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 233 KMELDHSQTKIKELLQEKQTERQEVNDLMKQV---------AEEKIIRKDKERNRIKAAV 283
K EL S+ K KEL ++ T QE NDL QV AEE+ + K + +++A +
Sbjct: 861 KDELAKSEAKRKELEEKLVTLVQEKNDLQLQVQAESENLLDAEERCDQLIKAKFQLEAKI 920
Query: 284 QSWKDELEDERKLRKCSESLHRKLARDLSDMKSSFSNI---LKELERERKARILLENLCD 340
+ + EDE ++ + RKL + S++K ++ L ++E+E+ A EN
Sbjct: 921 KEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT---ENKVK 977
Query: 341 EFAKGIRDYEEEV-RLLRHKPEMDHAHMKNADRL 373
+ + +E + +L R K + AH + D L
Sbjct: 978 NLTEELSGLDETIAKLTREKKALQEAHQQALDDL 1011
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,152,037
Number of Sequences: 539616
Number of extensions: 10839102
Number of successful extensions: 44167
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 1617
Number of HSP's that attempted gapping in prelim test: 38880
Number of HSP's gapped (non-prelim): 4951
length of query: 666
length of database: 191,569,459
effective HSP length: 124
effective length of query: 542
effective length of database: 124,657,075
effective search space: 67564134650
effective search space used: 67564134650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)